sallet_3.scaffold.fasta.s57.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold70
Parameters: 2 7 7 80 10 50 500
Length:  163197

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70--97	11	2.5	11	100	0	56	10	57	17	14	1.65
1685--1719	15	2.3	15	90	0	52	48	22	25	2	1.64
2680--2747	21	3.1	21	82	12	91	27	33	17	20	1.95
2680--2768	45	2.0	45	86	4	126	26	37	16	19	1.93
2919--2961	21	2.0	23	86	9	63	4	39	37	18	1.72
3546--3586	21	2.0	21	85	9	57	0	24	51	24	1.49
4908--4979	33	2.1	34	85	7	94	19	22	44	13	1.86
5001--5026	9	2.9	9	100	0	52	0	34	34	30	1.58
8213--8272	12	4.9	12	93	2	93	33	15	31	20	1.93
9677--9713	16	2.3	16	85	0	56	32	40	8	18	1.80
9726--9771	22	2.1	22	91	0	74	6	39	13	41	1.70
9840--9886	12	3.8	12	91	2	76	36	25	14	23	1.93
10664--10692	8	3.6	8	100	0	58	27	27	44	0	1.54
11361--11391	12	2.5	12	94	5	53	9	54	12	22	1.67
11898--11943	13	3.5	13	96	3	83	0	39	23	36	1.55
13136--13179	17	2.6	18	89	10	74	34	11	29	25	1.91
13308--13342	12	2.9	12	95	0	61	17	25	37	20	1.94
13537--13802	28	9.0	29	85	4	315	28	24	12	34	1.91
13537--13802	87	3.0	86	85	5	336	28	24	12	34	1.91
13923--14029	15	6.9	16	85	7	53	24	49	3	22	1.66
13940--14025	23	3.8	22	86	7	102	25	53	2	18	1.56
13941--14131	32	6.2	30	77	12	140	25	48	3	23	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13961--14027	15	4.5	15	96	3	118	26	53	0	19	1.45
14045--14205	8	20.0	8	69	11	62	22	50	4	21	1.67
14045--14142	32	3.1	32	88	1	144	23	52	5	19	1.66
14151--14203	15	3.5	15	82	12	65	16	50	3	28	1.62
14262--14302	19	2.2	19	100	0	82	21	53	0	24	1.46
14349--14410	32	1.9	32	84	12	83	14	37	4	43	1.67
16384--16446	14	4.5	14	77	0	63	14	20	39	25	1.90
16478--16509	14	2.3	14	94	0	55	21	15	50	12	1.77
16908--17013	15	7.5	14	79	13	85	65	10	21	2	1.37
16978--17023	14	3.2	14	90	3	65	69	8	17	4	1.31
17624--17665	21	2.0	21	86	9	59	14	30	16	38	1.89
17821--17847	12	2.2	12	100	0	54	77	14	7	0	0.97
19254--19281	11	2.5	11	100	0	56	25	32	32	10	1.90
19568--19649	19	4.5	19	77	14	82	24	30	24	20	1.99
19575--19644	35	2.0	35	88	5	106	24	28	25	21	1.99
21128--21183	21	2.7	21	80	0	67	19	10	64	5	1.44
22720--22784	30	2.2	30	86	5	78	7	50	27	12	1.67
22733--22793	30	2.1	29	93	6	113	3	50	31	13	1.57
25600--25628	15	1.9	15	100	0	58	20	0	41	37	1.53
25608--25675	33	2.1	33	85	0	91	22	4	36	36	1.74
25659--25711	18	2.9	18	88	0	79	20	5	43	30	1.75
25664--25723	18	3.3	18	83	0	57	20	5	43	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26057--26091	11	3.2	11	91	0	52	11	62	8	17	1.52
28320--28408	10	8.9	10	75	11	76	56	26	2	14	1.51
28313--28411	20	4.9	20	73	11	69	56	26	3	14	1.52
28386--28481	48	2.0	49	87	2	140	54	30	2	13	1.51
28561--28609	21	2.2	24	89	10	77	42	51	0	6	1.27
28561--28609	12	4.3	12	87	12	77	42	51	0	6	1.27
30313--30342	12	2.5	12	94	0	51	10	36	36	16	1.82
31498--31609	15	7.5	15	66	19	56	30	5	38	25	1.78
31642--31675	17	2.0	17	94	0	59	29	8	38	23	1.85
32336--32417	21	3.8	21	83	3	92	34	24	20	20	1.97
34172--34218	21	2.2	21	96	0	85	4	21	57	17	1.56
34204--34338	15	9.0	15	77	6	87	9	26	40	23	1.85
34214--34338	30	4.2	30	78	4	126	9	27	39	24	1.86
34204--34298	45	2.1	45	84	3	120	9	27	41	22	1.84
34328--34410	24	3.6	24	82	8	100	10	25	44	19	1.83
34412--34527	9	12.9	9	77	10	112	18	30	34	17	1.93
34400--34528	36	3.3	39	77	9	120	16	29	36	17	1.92
34495--34524	15	2.0	15	93	0	51	16	40	30	13	1.87
34659--34699	21	2.0	21	85	9	57	19	39	29	12	1.88
35181--35237	22	2.5	22	83	13	71	8	0	71	19	1.11
35181--35236	11	4.9	11	76	10	51	8	0	71	19	1.12
35186--35226	14	2.9	14	82	13	57	4	0	70	24	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35277--35331	24	2.2	26	80	9	69	3	1	45	49	1.30
36114--36159	24	1.9	24	95	0	83	30	23	21	23	1.99
37718--37807	15	6.0	15	96	0	153	0	18	55	25	1.43
39435--39478	8	5.5	8	94	0	79	38	9	52	0	1.33
40242--40273	11	2.8	12	90	9	50	0	65	0	34	0.93
40262--40295	13	2.6	13	90	0	50	0	47	5	47	1.26
48829--48881	22	2.4	22	96	0	97	33	37	3	24	1.74
48884--48938	6	9.0	6	86	13	69	30	63	0	5	1.17
51538--51614	10	7.4	10	85	12	102	7	54	0	37	1.29
57178--57224	12	3.9	12	82	0	67	36	40	14	8	1.77
57180--57231	12	4.3	12	80	0	59	34	40	17	7	1.78
97681--97761	8	10.1	8	91	0	99	34	17	35	12	1.87
97660--97761	16	6.4	16	85	1	98	32	15	38	13	1.87
99798--99842	19	2.5	17	83	13	63	17	40	33	8	1.81
99804--99864	19	3.2	19	92	0	95	19	37	34	8	1.82
101267--101360	23	4.2	22	82	8	109	20	19	27	32	1.96
114457--114525	27	2.6	27	86	4	95	34	21	34	8	1.84
114448--114525	15	5.6	14	73	20	58	35	20	34	8	1.84
114510--114543	9	3.8	9	96	0	59	32	26	32	8	1.87
116550--116583	17	2.0	17	88	11	52	32	17	23	26	1.97
120412--120446	11	3.2	11	83	0	52	34	25	11	28	1.91
122015--122055	9	4.6	9	93	0	73	46	7	21	24	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125881--125921	16	2.6	16	84	3	57	24	58	14	2	1.49
154851--154962	51	2.2	51	98	0	215	25	33	10	30	1.90

Tables:   1

The End!