Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold70
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 163197
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:84 original size:11 final size:11
Alignment explanation
Indices: 70--97 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
60 GCACCGTACT
70 CGCACCTTGCC
1 CGCACCTTGCC
81 CGCACCTTGCC
1 CGCACCTTGCC
92 CGCACC
1 CGCACC
98 CGACCCGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.57, G:0.18, T:0.14
Consensus pattern (11 bp):
CGCACCTTGCC
Left flanking sequence: Indices 1 -- 69
CCCACCAACCTCCCACCACCCTCATATCCTCTCGCCACCTCCCCCCGTGCCCACCCGCTGCACCG
TACT
Right flanking sequence: Indices 98 -- 597
CGACCCGTGCCCGCACTCGAGCCCGCACCGCGCGCTGCACCTCATCGCGGGCTGCAGCGAACTCA
TCGCCAGAACCCACCCACCACTCCATGAACAAGTCCAAGCGCACCGAGCTGACGCGGCGCCACGG
GTACCGCTCGTTCAAGGACCGCGTGGACCTGGTGCGGATCGAGCCGCTGCTCAATCTCACCAAGC
GCACCCTGGACTACGTCGAGGTGCTGCACACCCTCACGGTGCTCGAGCACTGGCGCGAGTGCAAC
TTGCTGGCGCTGTTCACCGAGTTCAGCGACGAGGTCGCCCCGTACGTGCGGCTGTTGCCCCAGTT
GCTCTACCACAAGGCCACGGTGTGGCGCCTTCTCCACGCCCACTTGCTCCGCGGCGACAAGCACG
CGCTCCAGCCGCTCCTCGAGATCGCCGCCCAGCTCGCCCACGACTTGGGCCCCGACTTCCTCCCG
TTCTACCCCGAGTTCCTCGCCACCGCCGCCGAGATCGCCCGGCGC
Found at i:1703 original size:15 final size:15
Alignment explanation
Indices: 1685--1719 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1675 AATAGAAACG
1685 AAGACGAAGAAGCCA
1 AAGACGAAGAAGCCA
* *
1700 AAGACGACGATGCCA
1 AAGACGAAGAAGCCA
1715 AAGAC
1 AAGAC
1720 AATAGAAACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.23, G:0.26, T:0.03
Consensus pattern (15 bp):
AAGACGAAGAAGCCA
Left flanking sequence: Indices 1185 -- 1684
GATGCCCGTGGGCAGCGACGACGCCACCGACGCGGCGTTCGTGGCCGTGTGCTTGTTCCGCAACG
CCCCCGCGCTCGAGATGGCCCGCTACGCCGCCCGGGTGTTTGCCAAGGCGAGAGAGCACCACTTT
ATGTTTGAGGTGGCGGCCGCCGGGATGGCGACGCCCCGGGCCGACGACGCGTTGGTGGCGCACGG
GGTGGCGCGCGAGGTGGCGCGGTACCTGGGGGCGTTGCCCCCCGCGCGGTGGCCGCAGTTGGCGT
TGTTCAAGTGGACGATGGCGGTGCACGCGCGGCCGGTGCCGGTGGAGGTGCCGGCGGAGGTGCAG
CGCGAGGTGGCGCGCGCGGTGGCCCTGCGGGTGCGCGCGCACGCGGTGCCCGAGTTCTGGCAGTT
GGTGCTTGCGCCGGTGGCCGACGCCGACGCGCTCGGGTTGGTGCGCCAGCTCGTGGGGGTGGCAA
GAGGTGAAGAAGAAGGAGAAGATGATGGCGAAGAGAATAGAAACG
Right flanking sequence: Indices 1720 -- 2219
AATAGAAACGGAGGCGTAGCCTCTAGGGCAAATAGGAGTGCTAGGGTTGGTACTGGTTCTAAGAG
AGTCTCTAACAGAGACAACTCTGACGACTCTGACGACTCTAACAGTCTCGACTCTGACTCTGACT
CTGCCCAAAACACCGCCGTCACCCTCCCCTCGCTGCCCCGCGCCCTCGCCCGCGCCGCCCCCGTC
GCCAACTCGCTCGCCCTCGTGGTGGAGCTGGTGCGCGACCCCGCGGTCGCCGCCGCCGCCGTGGC
CGCAGTGGCGGAGGTGCCGTGGACGCTGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTGGCCACCG
CGGGCCCTGCGCTCGCCCCCGGGGCCCGCGCCCGCGTGGTGGCGCGCGCCACCGCCGAGTTGGCG
CTGGTGGTGCACGAGACGCGCGCCGCGGCGTTGGCGCTCTTGCCCCGCGCCGGGGTCGACTCGCC
GCTCGTGGCCACCATGGCGGTGGTGGAGCTGGTGCCGTTGCTGTT
Found at i:2704 original size:21 final size:21
Alignment explanation
Indices: 2680--2747 Score: 91
Period size: 21 Copynumber: 3.1 Consensus size: 21
2670 CTCCGCTGAG
2680 GCTGACACAATCACTGACTCA
1 GCTGACACAATCACTGACTCA
*
2701 GCTGACACAATCGCTGACTCA
1 GCTGACACAATCACTGACTCA
*
2722 GCTGCTGACACTATCACTGACTCA
1 ---GCTGACACAATCACTGACTCA
2746 GC
1 GC
2748 ATCCACCACC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 22 0.54
24 19 0.46
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.21
Consensus pattern (21 bp):
GCTGACACAATCACTGACTCA
Left flanking sequence: Indices 2180 -- 2679
TGGCCACCATGGCGGTGGTGGAGCTGGTGCCGTTGCTGTTGGACACCGCCCGCGACGTCGAGCAG
CGGCTGCGGCTGTTGGCGCTCGACGTGGACAACGGGCAGTGGCTGGCGCACGAGCACACGATGGT
GGCCAACTGGTTTGTGGGCCAGTTGCTGAACAAGTTCAAGCCGAGTTGGCTGGCGGTGTACGAGG
CGTGGCCCAAGGTCGGGGTGGAGTGGGGCGTGCTCGAGTGGTACTTGACGGAGGAGGGGCGAGAG
GAGGAGGAGGAGGATGAGGAGGAGAATGGGGAGACTGGTGAAGACGAGAAGGCTGAGATTGAGAC
TGAGAAAACTAATAAGACTGGTAAGTCTAAGTCCAAGTCTACTTCTGACTCCAAGTCTACTAAGT
CTGACTCGTCCAAGCCTACTCCCTCCAAGTCCCGCTCCCTCTCGTTCACCGAGTTCGACTCCGAA
CCCTTGCATGCCCCCGGCACCCCCGCGGGCCTTCCCTCCGCTGAG
Right flanking sequence: Indices 2748 -- 3247
ATCCACCACCGCTGACTCAGCATCCACCAACCTTCTCCCCACCGAGCCCCGGTTCGTGCTGGCGT
ACAACGCCATGGCCGACCACGCCCACCCGTACCACCTCGTGGACGAGCTGCTTGCGCTCGCCCGC
GCCGGCGCGTGGGAGCTGCCGCTGGTGGAGTCGATGCGCACCCAGGTGCTCCGGGGCCTCGTCCA
GGTGCCCCTGGTGGCCTCGGACCACTTGGACGCGCTTGTGGCCCTCGTGGACGCGCCGTGGCCCA
CCCCGCAGCGCAACTTGCTCTTGGAGGCGCTCGCCAAGCACAAGCTGTTGGCCCAGACCGCCGGG
GCCGCCCACTTGAAGGCGGTGGCCACCCAGTTGTTGGGCCACGTGCACCGCGGGACCCAGAAGCT
TGCGTTGGAGGTGCTCTCGGCGTTCCTGGACCTCGGGATCCTCCGCAAGTACCAGGACTTGATGC
GGGGCCTCCTCGACGACCAGCTCTTCCGCGACCAGATGGCCCAGA
Found at i:2761 original size:45 final size:45
Alignment explanation
Indices: 2680--2768 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
2670 CTCCGCTGAG
*
2680 GCTGACACAATCACTGACTCAGCTGACACAATCGCTGACTCAGCT
1 GCTGACACAATCACTGACTCAGCTGACACAACCGCTGACTCAGCT
* * *
2725 GCTGACACTATCACTGACTCAGCAT-CCACCACCGCTGACTCAGC
1 GCTGACACAATCACTGACTCAGC-TGACACAACCGCTGACTCAGC
2769 ATCCACCAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (45 bp):
GCTGACACAATCACTGACTCAGCTGACACAACCGCTGACTCAGCT
Left flanking sequence: Indices 2180 -- 2679
TGGCCACCATGGCGGTGGTGGAGCTGGTGCCGTTGCTGTTGGACACCGCCCGCGACGTCGAGCAG
CGGCTGCGGCTGTTGGCGCTCGACGTGGACAACGGGCAGTGGCTGGCGCACGAGCACACGATGGT
GGCCAACTGGTTTGTGGGCCAGTTGCTGAACAAGTTCAAGCCGAGTTGGCTGGCGGTGTACGAGG
CGTGGCCCAAGGTCGGGGTGGAGTGGGGCGTGCTCGAGTGGTACTTGACGGAGGAGGGGCGAGAG
GAGGAGGAGGAGGATGAGGAGGAGAATGGGGAGACTGGTGAAGACGAGAAGGCTGAGATTGAGAC
TGAGAAAACTAATAAGACTGGTAAGTCTAAGTCCAAGTCTACTTCTGACTCCAAGTCTACTAAGT
CTGACTCGTCCAAGCCTACTCCCTCCAAGTCCCGCTCCCTCTCGTTCACCGAGTTCGACTCCGAA
CCCTTGCATGCCCCCGGCACCCCCGCGGGCCTTCCCTCCGCTGAG
Right flanking sequence: Indices 2769 -- 3268
ATCCACCAACCTTCTCCCCACCGAGCCCCGGTTCGTGCTGGCGTACAACGCCATGGCCGACCACG
CCCACCCGTACCACCTCGTGGACGAGCTGCTTGCGCTCGCCCGCGCCGGCGCGTGGGAGCTGCCG
CTGGTGGAGTCGATGCGCACCCAGGTGCTCCGGGGCCTCGTCCAGGTGCCCCTGGTGGCCTCGGA
CCACTTGGACGCGCTTGTGGCCCTCGTGGACGCGCCGTGGCCCACCCCGCAGCGCAACTTGCTCT
TGGAGGCGCTCGCCAAGCACAAGCTGTTGGCCCAGACCGCCGGGGCCGCCCACTTGAAGGCGGTG
GCCACCCAGTTGTTGGGCCACGTGCACCGCGGGACCCAGAAGCTTGCGTTGGAGGTGCTCTCGGC
GTTCCTGGACCTCGGGATCCTCCGCAAGTACCAGGACTTGATGCGGGGCCTCCTCGACGACCAGC
TCTTCCGCGACCAGATGGCCCAGATGGCGTTTGCCGCGGGCGACG
Found at i:2943 original size:21 final size:23
Alignment explanation
Indices: 2919--2961 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
2909 CGATGCGCAC
*
2919 CCAGGTGCTCC-GG-GGCCTCGT
1 CCAGGTGCCCCTGGTGGCCTCGT
2940 CCAGGTGCCCCTGGTGGCCTCG
1 CCAGGTGCCCCTGGTGGCCTCG
2962 GACCACTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 2 0.11
23 7 0.37
ACGTcount: A:0.05, C:0.40, G:0.37, T:0.19
Consensus pattern (23 bp):
CCAGGTGCCCCTGGTGGCCTCGT
Left flanking sequence: Indices 2419 -- 2918
TTGACGGAGGAGGGGCGAGAGGAGGAGGAGGAGGATGAGGAGGAGAATGGGGAGACTGGTGAAGA
CGAGAAGGCTGAGATTGAGACTGAGAAAACTAATAAGACTGGTAAGTCTAAGTCCAAGTCTACTT
CTGACTCCAAGTCTACTAAGTCTGACTCGTCCAAGCCTACTCCCTCCAAGTCCCGCTCCCTCTCG
TTCACCGAGTTCGACTCCGAACCCTTGCATGCCCCCGGCACCCCCGCGGGCCTTCCCTCCGCTGA
GGCTGACACAATCACTGACTCAGCTGACACAATCGCTGACTCAGCTGCTGACACTATCACTGACT
CAGCATCCACCACCGCTGACTCAGCATCCACCAACCTTCTCCCCACCGAGCCCCGGTTCGTGCTG
GCGTACAACGCCATGGCCGACCACGCCCACCCGTACCACCTCGTGGACGAGCTGCTTGCGCTCGC
CCGCGCCGGCGCGTGGGAGCTGCCGCTGGTGGAGTCGATGCGCAC
Right flanking sequence: Indices 2962 -- 3461
GACCACTTGGACGCGCTTGTGGCCCTCGTGGACGCGCCGTGGCCCACCCCGCAGCGCAACTTGCT
CTTGGAGGCGCTCGCCAAGCACAAGCTGTTGGCCCAGACCGCCGGGGCCGCCCACTTGAAGGCGG
TGGCCACCCAGTTGTTGGGCCACGTGCACCGCGGGACCCAGAAGCTTGCGTTGGAGGTGCTCTCG
GCGTTCCTGGACCTCGGGATCCTCCGCAAGTACCAGGACTTGATGCGGGGCCTCCTCGACGACCA
GCTCTTCCGCGACCAGATGGCCCAGATGGCGTTTGCCGCGGGCGACGAGGCCAAGGCGATGCCGT
ACGTGCTCCGGGTGTTGTTTGGGCGTGTCCAGGGCCGGGTGGCGAAGCTGGCGACCCTGCGCAAC
GCCGTGCTCCAGTTCCTTCCGAAGCTTTCCGACGAGAATTTGGAGCGGTTCTTGGCGATTGCTGC
CGAGGCCACGGGCCACGACGGTGGTAGTGAGGTGGCTGGGGTGGT
Found at i:3585 original size:21 final size:21
Alignment explanation
Indices: 3546--3586 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
3536 TGTACAAGCT
*
3546 GGTGCTGGTGCCCGGGTTGGC
1 GGTGCTGGTGCCCGCGTTGGC
3567 GGTGCTGGTG-CCGCCGTTGG
1 GGTGCTGGTGCCCG-CGTTGG
3587 TGGCGGTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.00, C:0.24, G:0.51, T:0.24
Consensus pattern (21 bp):
GGTGCTGGTGCCCGCGTTGGC
Left flanking sequence: Indices 3046 -- 3545
CACAAGCTGTTGGCCCAGACCGCCGGGGCCGCCCACTTGAAGGCGGTGGCCACCCAGTTGTTGGG
CCACGTGCACCGCGGGACCCAGAAGCTTGCGTTGGAGGTGCTCTCGGCGTTCCTGGACCTCGGGA
TCCTCCGCAAGTACCAGGACTTGATGCGGGGCCTCCTCGACGACCAGCTCTTCCGCGACCAGATG
GCCCAGATGGCGTTTGCCGCGGGCGACGAGGCCAAGGCGATGCCGTACGTGCTCCGGGTGTTGTT
TGGGCGTGTCCAGGGCCGGGTGGCGAAGCTGGCGACCCTGCGCAACGCCGTGCTCCAGTTCCTTC
CGAAGCTTTCCGACGAGAATTTGGAGCGGTTCTTGGCGATTGCTGCCGAGGCCACGGGCCACGAC
GGTGGTAGTGAGGTGGCTGGGGTGGTGGACGTGGACGTGGAGACCGTGGACGTGCGCCAGTTGAA
GCGGTTGCGTGCGTACACCCTGCTCTTGTTTGATGTGTACAAGCT
Right flanking sequence: Indices 3587 -- 4086
TGGCGGTGGTGCAGACGGCGGAGGCGGTGTGCGAAGCAGAGGGAGAGGGAGAGGTGGAAGAGGAG
GAGGAAGAAGAAGAAGAAGAAGAGGTAATGGAGGATGTGGAGGATGTGGTAATGGAGGGAGAGGA
AGAAGAGGAGGTTGTGGAGGCTATGGAAGTGGACGAGTCTGAGAAGTCTACGAAGTCGAAGTCTG
AGAAGTCTAATTCAAAGGCTGACACCGAAGACATTGCCATTGAAAACAATGCCATCGACACCACC
CGCACCACCCACACCCCCTCCCGCCTCCTCCACTCCGCACAGCTCACCCGTGCCTCCGCCCTCAA
GGCGTTCGCACGCCTCCTCACCACCATCGACCACGACTGGACGGACGCCGCCAACGCCGTGGCCG
CCGCGGTGGCCCCGCTCTGGCCCGGGTTCGCCCGCGACAACGCCACCACCCCCACCCCGCTCTTT
GCCCTCGTGGAGGCCGCGGTCGACGCCCCGCTGCCGCTGGCACGC
Found at i:4974 original size:33 final size:34
Alignment explanation
Indices: 4908--4979 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
4898 CTGCTATTGT
*
4908 GAGGGTGGTCGAGACTGGCACCGGTGCGAGCACC
1 GAGGGTGGTCGAGACTGACACCGGTGCGAGCACC
* *
4942 GAGGGT-GT-GAGCACTGACACTGGTGTGAGCACC
1 GAGGGTGGTCGAG-ACTGACACCGGTGCGAGCACC
4975 GAGGG
1 GAGGG
4980 CACCTCTGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 3 0.09
33 25 0.74
34 6 0.18
ACGTcount: A:0.19, C:0.22, G:0.44, T:0.14
Consensus pattern (34 bp):
GAGGGTGGTCGAGACTGACACCGGTGCGAGCACC
Left flanking sequence: Indices 4408 -- 4907
CGCCACCCGCACGAGGAGGTGTTGCGCACGGTGGCACTCCTCTTGGCCCAGCCGGTGCCCGCGGA
GGTGCACCGCCAGGTGTACACCTCGGTGGCACGGGTGTTGGGCACCGTGGACGACTCGCGCACCC
GGGCCGCCGCGGTGGAGGTGATGCTGCTCCTCCCGTTTGCCCTGGCCCAGGTGACCGTCGAGCTC
AACGCGGTGGTGCGCGGCAACTTACCGGACTTTGAGCGGCGGTTGAAGGCGTATCGCGATGTTCA
GGAGCACCCGCACATGGACGCGTTTGCCTGGTTGCCCATTGTGCACCTGGCACTCTTTTTCGTCA
ACGACGACGAGTTGCCCATCCACCGCAACGCCCAGGCGACGATGGAGGCGTTTATTGCCGAGGCG
CCGAAGCGGGACGACACCGCGGCGTTGTTTGAGCGGGTGGTGGTGCCTGCGTTGCGCCGGGGGTT
GCGGTCGACGAACGATATCTATATTGAGTTGGTGGCTGCTATTGT
Right flanking sequence: Indices 4980 -- 5479
CACCTCTGACACCTCCGACACCTCCGGTGTCTCCGGTGTCTCCGGTGCTGCCTCGGTGTACGCCC
CCTTCCGCGACATGGCGGTCCTCGACGGCGACGACGACACCGGGTTCTTCCAGAACATCACCCAC
GTCCAGCCCGCCCAGCGCCTGGTGGCGATCTTCGCCCTCCGCGGCGCCCCGCTCTCCGACCACCT
GGCGTTCTTCTACCTCGTGCCCCTCCTCGAGCGGTGGATCCTCGAGGAAGACGACCGCTACGCCC
AGCTCCTGGTGGACGCGGCCGCGGTGTTGCCCGCAGTGATGGCCCGCGTCCACTTTGCCCACTGG
TGCCAGGCGGTGCGCCGCTACGCCGCCCGGGTGCGCCGGGCAGAGCACACCGCGGCCTCCGAGGG
CGAGGACGCGCTGGTGGTGCCGCTCCGGCGCGCGGTGTGGCTCTTGGAGGGCACCCTGGCCGCCA
TTGGCGCCTTGGTGGACATGCCCGACCCCGCCACCTACGACCGCT
Found at i:5013 original size:9 final size:9
Alignment explanation
Indices: 5001--5026 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4991 CCTCCGACAC
5001 CTCCGGTGT
1 CTCCGGTGT
5010 CTCCGGTGT
1 CTCCGGTGT
5019 CTCCGGTG
1 CTCCGGTG
5027 CTGCCTCGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.35, G:0.35, T:0.31
Consensus pattern (9 bp):
CTCCGGTGT
Left flanking sequence: Indices 4501 -- 5000
GCACGGGTGTTGGGCACCGTGGACGACTCGCGCACCCGGGCCGCCGCGGTGGAGGTGATGCTGCT
CCTCCCGTTTGCCCTGGCCCAGGTGACCGTCGAGCTCAACGCGGTGGTGCGCGGCAACTTACCGG
ACTTTGAGCGGCGGTTGAAGGCGTATCGCGATGTTCAGGAGCACCCGCACATGGACGCGTTTGCC
TGGTTGCCCATTGTGCACCTGGCACTCTTTTTCGTCAACGACGACGAGTTGCCCATCCACCGCAA
CGCCCAGGCGACGATGGAGGCGTTTATTGCCGAGGCGCCGAAGCGGGACGACACCGCGGCGTTGT
TTGAGCGGGTGGTGGTGCCTGCGTTGCGCCGGGGGTTGCGGTCGACGAACGATATCTATATTGAG
TTGGTGGCTGCTATTGTGAGGGTGGTCGAGACTGGCACCGGTGCGAGCACCGAGGGTGTGAGCAC
TGACACTGGTGTGAGCACCGAGGGCACCTCTGACACCTCCGACAC
Right flanking sequence: Indices 5027 -- 5526
CTGCCTCGGTGTACGCCCCCTTCCGCGACATGGCGGTCCTCGACGGCGACGACGACACCGGGTTC
TTCCAGAACATCACCCACGTCCAGCCCGCCCAGCGCCTGGTGGCGATCTTCGCCCTCCGCGGCGC
CCCGCTCTCCGACCACCTGGCGTTCTTCTACCTCGTGCCCCTCCTCGAGCGGTGGATCCTCGAGG
AAGACGACCGCTACGCCCAGCTCCTGGTGGACGCGGCCGCGGTGTTGCCCGCAGTGATGGCCCGC
GTCCACTTTGCCCACTGGTGCCAGGCGGTGCGCCGCTACGCCGCCCGGGTGCGCCGGGCAGAGCA
CACCGCGGCCTCCGAGGGCGAGGACGCGCTGGTGGTGCCGCTCCGGCGCGCGGTGTGGCTCTTGG
AGGGCACCCTGGCCGCCATTGGCGCCTTGGTGGACATGCCCGACCCCGCCACCTACGACCGCTAC
TTGACACGTGACTACTTGCCCTTGGTGATGCCCCTCTTGCTCAAG
Found at i:8245 original size:12 final size:12
Alignment explanation
Indices: 8213--8272 Score: 93
Period size: 12 Copynumber: 4.9 Consensus size: 12
8203 GAATACTATT
8213 TGGCTGCAAAACG
1 TGGCTGCAAAA-G
8226 TGGCTGCAAAAG
1 TGGCTGCAAAAG
*
8238 TGGTTGCAAAAG
1 TGGCTGCAAAAG
*
8250 TGGTTGCAAAAG
1 TGGCTGCAAAAG
8262 TGGCTGCAAAA
1 TGGCTGCAAAA
8273 AGGCTGCTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
12 34 0.76
13 11 0.24
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (12 bp):
TGGCTGCAAAAG
Left flanking sequence: Indices 7713 -- 8212
GCACCGGGCCACCGGCATTTTGCGCAAACACCCGCAGAAGGAGCTGCTTTTCACCCTGAAAAAGG
CAGTGATGAAGCTCGTGGCGATGTTGATCCAGATCGTGCCCGCGGAGCAGCTCGAGAAGCCCGCG
GAGGCGGTGATCATTGCGTTGAACACCTACATCGAGACCGACGACACCGAGTTGCGCCCGTTGGC
GCTCGAGGTGCAGCTGGTGCTTGAGCTGAAGCTTGGGATGAGCGAGTTTTCGCGCATCCACGCCC
ACACCTACCAGCAGATCCACCAGCGGCGGGTGGACCGCCGGGCCAAGCGGGCGCAGTTGGCGATC
GACGCCCCCGACGTGGCTGCCGCCAACCGGGTCAAGAAACACATCAAGGACCGCAAGCGGCGCAA
GGTGAACGACAAGGACGAGAACGGGTTGTTCCGAGTGAAGAAGAAGCGGAGAGTTTAGAAGAAGA
ATTTAGCATGTATTATAGAGCATTGAAAAACATACGAATACTATT
Right flanking sequence: Indices 8273 -- 8772
AGGCTGCTTGGCAGAACTACGTCCAAATAAACGAGTTTTAGTAGGGAAAATGAGACAAACGTATA
ACACGGGAAGCTGAGAACACGACAAGCTGTTTTTTCAAGTTAGACAATTCATTGGTTGGTAGCTA
GTTAGTTTCGTCCAAATTATAATTTTGATAGTGTCATGTGATGTTAGGTCACGTGACTTTTTCCA
ACCCGACAGAGGTTAGCCTGGGCCCTGTTTTCCCGGAATTTTTTTCAGCGTCGTAGCAGCGTCAG
AATGCCTGTTGGGTCTATCTCAACTGGATTCGTTGGACTTTACCCACCTGGTGTGACCCAGACGG
CAACCACAAAGAAATATGATTATATGCACTACCTTCACCAATAACAAGGCGATAGCCACGGTGGC
TGGGGGAGAAAACCCGGGAAATCAACCTAAAACTCCTCCAGCGGGTGTGGCCAGTAGTGCGGGCA
TTTTTTGGGATCAATTTGGGGGACTTTGGGCTCAGCGCCCAGGTC
Found at i:9713 original size:16 final size:16
Alignment explanation
Indices: 9677--9713 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
9667 AACCCCTTCG
*
9677 CCAACACATACCGGTT
1 CCAACACATACCGCTT
*
9693 TCAACACATACCGCTT
1 CCAACACATACCGCTT
9709 CCAAC
1 CCAAC
9714 CAAGGCTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.41, G:0.08, T:0.19
Consensus pattern (16 bp):
CCAACACATACCGCTT
Left flanking sequence: Indices 9177 -- 9676
GAGTGAACTAGGGTGCCTCGAGTCATCAAAATTGCTTAAACTCCCTTCTCTACACTATGAGTCGA
CTGATACTAGTTTTACGGTGAGGTAAAAAAAATTAAAAACGCCCTCTACCAGGCTGTACTGCTCC
TGTTCCACCTATGCCGGTGCCTAGCAACCCCTGACGTGTCGCTTACTAACGAGACACCTTCACAA
TAGCACGCTACGTCCTCGTGTTTAGTTGCCTATTTCGCTTGTTTTTGTGGCCGGTGGCTTATCAA
TGTCTCCACCGTTATGTCTCCTATGTCTCGATGTCTCCCGTTGTCCCTCGCTTATGCACTCAATA
TACGAATAGCCGCTTGCCCCCCATCGCCCATCAGACCAATCGTCAAGTCGATACGGGCGGCTAGC
TCGCTGCCACATTTCATCGATCGCCAAAGTCTATTGCTCAACTCTAATTTGCCCTATTTGAGAAC
TGGTTATGAACTTGCTAAGAAACATTTTCACCGTAAACCCCTTCG
Right flanking sequence: Indices 9714 -- 10213
CAAGGCTTAGTCCTTATGCTCGTCTCCCGCGTTTCTTATGCTCGTCTCCCCCATTTCTGTTCCTG
TCCGTCGGTTTTAGGGCCACCATACCAACCTCCGACACCCCGCTCGAGCCGGTAGACCAAAACAA
TAGTCCTCGACAATAGTCCTGAAAATAGTCCTGACAATAGTCCCACCTTATCGGGGCAAGCACCG
GACCGCCGGAACCGTAAATGTCTGAATACCTTCCCGTTTGACATGATAACGCCAAGATAACAATC
CCGCTTACGTGACCGATGGCCACAAAACGGCTACCCCACAAGCGGGCAGCCACAAAGCGCACCCC
ATTACGTGTACCCCGGGCTCGAACGTCGGTCCTGCTTCGAACAATCGCCCAACCCACCCGCCTCG
CGGAACCCCGAGTGTAGGGCGCCTCCAAACACTTGTGGGCGCCTCCTGGCAGCTGGAGTCCACCA
CACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGACAA
Found at i:9770 original size:22 final size:22
Alignment explanation
Indices: 9726--9771 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
9716 AGGCTTAGTC
* *
9726 CTTATGCTCGTCTCCCGCGTTT
1 CTTATGCTCGTCTCCCCCATTT
9748 CTTATGCTCGTCTCCCCCATTT
1 CTTATGCTCGTCTCCCCCATTT
9770 CT
1 CT
9772 GTTCCTGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.07, C:0.39, G:0.13, T:0.41
Consensus pattern (22 bp):
CTTATGCTCGTCTCCCCCATTT
Left flanking sequence: Indices 9226 -- 9725
CTACACTATGAGTCGACTGATACTAGTTTTACGGTGAGGTAAAAAAAATTAAAAACGCCCTCTAC
CAGGCTGTACTGCTCCTGTTCCACCTATGCCGGTGCCTAGCAACCCCTGACGTGTCGCTTACTAA
CGAGACACCTTCACAATAGCACGCTACGTCCTCGTGTTTAGTTGCCTATTTCGCTTGTTTTTGTG
GCCGGTGGCTTATCAATGTCTCCACCGTTATGTCTCCTATGTCTCGATGTCTCCCGTTGTCCCTC
GCTTATGCACTCAATATACGAATAGCCGCTTGCCCCCCATCGCCCATCAGACCAATCGTCAAGTC
GATACGGGCGGCTAGCTCGCTGCCACATTTCATCGATCGCCAAAGTCTATTGCTCAACTCTAATT
TGCCCTATTTGAGAACTGGTTATGAACTTGCTAAGAAACATTTTCACCGTAAACCCCTTCGCCAA
CACATACCGGTTTCAACACATACCGCTTCCAACCAAGGCTTAGTC
Right flanking sequence: Indices 9772 -- 10271
GTTCCTGTCCGTCGGTTTTAGGGCCACCATACCAACCTCCGACACCCCGCTCGAGCCGGTAGACC
AAAACAATAGTCCTCGACAATAGTCCTGAAAATAGTCCTGACAATAGTCCCACCTTATCGGGGCA
AGCACCGGACCGCCGGAACCGTAAATGTCTGAATACCTTCCCGTTTGACATGATAACGCCAAGAT
AACAATCCCGCTTACGTGACCGATGGCCACAAAACGGCTACCCCACAAGCGGGCAGCCACAAAGC
GCACCCCATTACGTGTACCCCGGGCTCGAACGTCGGTCCTGCTTCGAACAATCGCCCAACCCACC
CGCCTCGCGGAACCCCGAGTGTAGGGCGCCTCCAAACACTTGTGGGCGCCTCCTGGCAGCTGGAG
TCCACCACACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGACAACTACTTGACACGA
CAATGGGGCCAGACCCGTCTAATTCAGCATTAGCTCCACACTCAC
Found at i:9872 original size:12 final size:12
Alignment explanation
Indices: 9840--9886 Score: 76
Period size: 12 Copynumber: 3.8 Consensus size: 12
9830 GTAGACCAAA
9840 ACAATAGTCCTCG
1 ACAATAGTCCT-G
9853 ACAATAGTCCTG
1 ACAATAGTCCTG
*
9865 AAAATAGTCCTG
1 ACAATAGTCCTG
9877 ACAATAGTCC
1 ACAATAGTCC
9887 CACCTTATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 21 0.66
13 11 0.34
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (12 bp):
ACAATAGTCCTG
Left flanking sequence: Indices 9340 -- 9839
ACGTGTCGCTTACTAACGAGACACCTTCACAATAGCACGCTACGTCCTCGTGTTTAGTTGCCTAT
TTCGCTTGTTTTTGTGGCCGGTGGCTTATCAATGTCTCCACCGTTATGTCTCCTATGTCTCGATG
TCTCCCGTTGTCCCTCGCTTATGCACTCAATATACGAATAGCCGCTTGCCCCCCATCGCCCATCA
GACCAATCGTCAAGTCGATACGGGCGGCTAGCTCGCTGCCACATTTCATCGATCGCCAAAGTCTA
TTGCTCAACTCTAATTTGCCCTATTTGAGAACTGGTTATGAACTTGCTAAGAAACATTTTCACCG
TAAACCCCTTCGCCAACACATACCGGTTTCAACACATACCGCTTCCAACCAAGGCTTAGTCCTTA
TGCTCGTCTCCCGCGTTTCTTATGCTCGTCTCCCCCATTTCTGTTCCTGTCCGTCGGTTTTAGGG
CCACCATACCAACCTCCGACACCCCGCTCGAGCCGGTAGACCAAA
Right flanking sequence: Indices 9887 -- 10386
CACCTTATCGGGGCAAGCACCGGACCGCCGGAACCGTAAATGTCTGAATACCTTCCCGTTTGACA
TGATAACGCCAAGATAACAATCCCGCTTACGTGACCGATGGCCACAAAACGGCTACCCCACAAGC
GGGCAGCCACAAAGCGCACCCCATTACGTGTACCCCGGGCTCGAACGTCGGTCCTGCTTCGAACA
ATCGCCCAACCCACCCGCCTCGCGGAACCCCGAGTGTAGGGCGCCTCCAAACACTTGTGGGCGCC
TCCTGGCAGCTGGAGTCCACCACACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGAC
AACTACTTGACACGACAATGGGGCCAGACCCGTCTAATTCAGCATTAGCTCCACACTCACCATTA
GTGGGCTGTCCATGCACCATCGCCGATCACTGACACTCATCACTGACACACCAATAACAATGCCC
GTTTACGCTATCGTCAACTACTTTTCTTGGCCTTGCTCCATTGTT
Found at i:10677 original size:8 final size:8
Alignment explanation
Indices: 10664--10692 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
10654 GAGCAACGGT
10664 AGCCAGGG
1 AGCCAGGG
10672 AGCCAGGG
1 AGCCAGGG
10680 AGCCAGGG
1 AGCCAGGG
10688 AGCCA
1 AGCCA
10693 CTACAACCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.45, T:0.00
Consensus pattern (8 bp):
AGCCAGGG
Left flanking sequence: Indices 10164 -- 10663
CACCACACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGACAACTACTTGACACGACA
ATGGGGCCAGACCCGTCTAATTCAGCATTAGCTCCACACTCACCATTAGTGGGCTGTCCATGCAC
CATCGCCGATCACTGACACTCATCACTGACACACCAATAACAATGCCCGTTTACGCTATCGTCAA
CTACTTTTCTTGGCCTTGCTCCATTGTTCAACGGCTTTTACTCCCGTTTCGAGCGATGCGTATAA
TGCCGCGGGGCTTAGATCAGCCACAAAGCCGAAACCGAGCCCAACACGGCCCCAGCGGGCCCAGA
GTCCGCCGTCCACCCGCGCTCGCCTCGTAGCCCGCAATTACCGCTGTTTTGATCTACCCCAGCCG
CGATTACCCCTGATATCACCACCCAATCACGCCTCACGCCTCATGGTGAATAATAATAGTGAAAA
AAAAAATAAACCAACAATAGTAACCCAACAGACGAGAGCAACGGT
Right flanking sequence: Indices 10693 -- 11192
CTACAACCCACGTCAATCGCACCAGCTGTCGCACGGCTGGAGCACTGCGGCTATCTGCGTTCGCG
CTGAGCGCCAACGGCCCGTTGACTGATTTAGGTTCCACCTCGGTCTTGGCATCCTAAAAAAAGCC
CGCAACCACCATGCTAAAAAAAGGGGAACAATCAGGATAGTGCTTAGGCTAAGTCAGGTAGACGT
GGTGGGCGTGGTAGGCGACGTAGAGAGCTCGGTTATCCGTTTTCCCTTGTCAATATTCCTACTCT
CTACCGTTTTCTACTTTCTCGTTTTCGACCTCGACGTTATCGTTCTCGTTCTCCACTTCTCTATT
TTCTTGTCCTGCCTAACGCACTTGGGCTGCCTGATCGCTAGCGCTGAAGCAAGGAGAATTCTGCA
GTTCAGATTCGCCAAGGCCAGCAGCACAGAGCCAGGGTGCAGCCAGCATGCAACCAGGACCCCTA
TCCGAGTGTCGTCGAGTCTACCTGTGCCCTACGTCCCCTCCTGGC
Found at i:11378 original size:12 final size:12
Alignment explanation
Indices: 11361--11391 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
11351 CGTGCTGTGA
11361 CCTACGCCTCTC
1 CCTACGCCTCTC
11373 CCTACGCCTCTC
1 CCTACGCCTCTC
11385 CGCTACG
1 C-CTACG
11392 TCACTAAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.10, C:0.55, G:0.13, T:0.23
Consensus pattern (12 bp):
CCTACGCCTCTC
Left flanking sequence: Indices 10861 -- 11360
AGTGCTTAGGCTAAGTCAGGTAGACGTGGTGGGCGTGGTAGGCGACGTAGAGAGCTCGGTTATCC
GTTTTCCCTTGTCAATATTCCTACTCTCTACCGTTTTCTACTTTCTCGTTTTCGACCTCGACGTT
ATCGTTCTCGTTCTCCACTTCTCTATTTTCTTGTCCTGCCTAACGCACTTGGGCTGCCTGATCGC
TAGCGCTGAAGCAAGGAGAATTCTGCAGTTCAGATTCGCCAAGGCCAGCAGCACAGAGCCAGGGT
GCAGCCAGCATGCAACCAGGACCCCTATCCGAGTGTCGTCGAGTCTACCTGTGCCCTACGTCCCC
TCCTGGCGCTTTTTTCCGTCCCCCTTCTCCGACCCCTTTTCTCGTAACTTTGATTATCACTGATC
GGAAATCTCCCGGCAAACACCAGACGCGTCCGAAGTGCGTTTACTGGCCTGGAACGGAGTGAAAC
CCGTCAAAAACACCGTAGCGCTTACCCAGCAACCGCGTGCTGTGA
Right flanking sequence: Indices 11392 -- 11891
TCACTAAGCCGCCCACCCCTTCGCTTCGCAGCCATCGTACACAAAGACTAGCCTATGTTGTGAGC
CGCAGCACATTGCGTATACTTTTTAGCCCGCGTAAAAACCTTAAACCACGCACGTCGGTAAACAA
CCCCAATAGCCAATGGGGCCAGCTACCAAGCGAGCCCGCTAACCGACAGCCCCCATTGCCATTGG
ACCGCTCCCGCTACCGCCCCGCAGCCCCTCAGCCTCGGTTCCCCACCACCTCCTCCGCCACCGCG
CGTCCAGCCCGCATACCTCTGTTTCACCTAAACGGCGCCAAACAATAGCCATGCACAGTGGGAAT
TTTGCCCAATCGAGACATTTTACCCCTTCAGCTCGACCGGGACTACGCAACCAGAGCCTAAATGG
CGGGCGATGGGGTGATTACGAAACGCCATGCACGTAATCTACTGGGGGGATTGTTGTACTGTGCC
CGCGACGCGGTGGAAAGGGTTCGCATTGTCCACCGACATACGGCA
Found at i:11924 original size:13 final size:13
Alignment explanation
Indices: 11898--11943 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
11888 GGCAACTGTA
11898 CCCGTTTGGTCCTG
1 CCCGTTT-GTCCTG
11912 CCCGTTTGTCCTG
1 CCCGTTTGTCCTG
11925 CCCGTTTGTCCTG
1 CCCGTTTGTCCTG
11938 CCCGTT
1 CCCGTT
11944 AGACCCTACC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 25 0.78
14 7 0.22
ACGTcount: A:0.00, C:0.39, G:0.24, T:0.37
Consensus pattern (13 bp):
CCCGTTTGTCCTG
Left flanking sequence: Indices 11398 -- 11897
AGCCGCCCACCCCTTCGCTTCGCAGCCATCGTACACAAAGACTAGCCTATGTTGTGAGCCGCAGC
ACATTGCGTATACTTTTTAGCCCGCGTAAAAACCTTAAACCACGCACGTCGGTAAACAACCCCAA
TAGCCAATGGGGCCAGCTACCAAGCGAGCCCGCTAACCGACAGCCCCCATTGCCATTGGACCGCT
CCCGCTACCGCCCCGCAGCCCCTCAGCCTCGGTTCCCCACCACCTCCTCCGCCACCGCGCGTCCA
GCCCGCATACCTCTGTTTCACCTAAACGGCGCCAAACAATAGCCATGCACAGTGGGAATTTTGCC
CAATCGAGACATTTTACCCCTTCAGCTCGACCGGGACTACGCAACCAGAGCCTAAATGGCGGGCG
ATGGGGTGATTACGAAACGCCATGCACGTAATCTACTGGGGGGATTGTTGTACTGTGCCCGCGAC
GCGGTGGAAAGGGTTCGCATTGTCCACCGACATACGGCAACTGTA
Right flanking sequence: Indices 11944 -- 12443
AGACCCTACCAGTCGTCAACTATAGCCGTGGGGTAATTGCAAAATGGTCGGAAACCACCACCAGC
TGGGACGACCGAGGCTACTAACCCACGACACCCAACACCAGTGTCTGTCTGCGGTTTGTGCCCTG
CCCGGTTTGTGCCCTGGTGCCAGTGTTTGCCCCGCACTGGGACGGGCCCGATCTCAGGATATGCA
CGAACCCTCCTTACTGCTGCCAGGCCCAAACACATATAAATGGCCGGGGGTGCCCTGCAGAGACC
AACGAGACCAACGATGGACCACGAGATCCCCACTGAGCACATAACGGTGATTCTGGCCGCGTGGA
CGGCGCTCACCCTGGACGACCTGGTGCGGTTCCAGGCCCTGGTCGCAGACGCTATCTACACACAG
AACTACGGGAGAGAAGAACGCACCACCGACGTGTTTGGGGTGTTCCAGGAGTTCCAGCTCGCAGA
GACGCTCGCAGCCATCACCATGGTCATCCGGCGGCTCGAGGTGTC
Found at i:13159 original size:18 final size:18
Alignment explanation
Indices: 13136--13179 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
13126 TTGCGGTTCA
13136 GGAAATTACGATTCAGGT
1 GGAAATTACGATTCAGGT
13154 GGAAA-TACGATTCAGGT
1 GGAAATTACGATTCAGGT
13171 GG-AATTACG
1 GGAAATTACG
13180 GTATATCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.08
17 18 0.72
18 5 0.20
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (18 bp):
GGAAATTACGATTCAGGT
Left flanking sequence: Indices 12636 -- 13135
GATGGCGCTTGGCGCCGACGACGTCGTCGAGCTTGAGCCCAAGCCGTACGTGCTGTTGTTGGCGC
TGCCAGCGCTGCTTGTGCTGGAACGGAACAACCTGATGCTGCTGCAATTTTCCGAGCTTCTGTTG
GTGGAGCTGACCACCACCGTGGCCACAGAGGCGATGGACGCGGAGCCCCCGAAGAAACGCCGGGC
GTTGTCGGAGCTGCCCAAGGAGAAAAAGCACGCGGGCAAGGTGGTGACGAACGAGCTGATGAAAA
AGACCATCTGCGAGCCCAACGAGTTGCAGCACACCGAGTTTGGCGACGACCTGTACGACTTGATC
AACTGTTTTGACATCCACGAGGCCGCTCCCGTGACCCCGCCCAAGGCGGTGCGCATGCGCAAGCC
GCTGTTGACGCGGATGAGAACGAACGACTCGGTGCGGAGCAGAAAGAAGAACCTCGTCGAGCCCT
ACCTGTGTGTTATTGTCTGAGAAGATCAGGTGGGATTGCGGTTCA
Right flanking sequence: Indices 13180 -- 13679
GTATATCTACTCGGAATGACCACCCGGTACGATACTCGGGTTTGGATAGCGCCACCCGGCCCAAA
CAGGCAATGCGGGGCATGCACCTGGGGTACAGACCAAAGACGCACGACGGAATGTGGCTAATAGT
CCATACGTGGGTCCAGACGTGGGTCCAGACGTGTCAGTCGGTCCAGACGTGGTCTTCGTCAAACG
TCAACCCCGGTTTGCGATTAAAAGCTGTTTTGCCTGGTCTGACCAGCCAGGCTACAGCTACGCTC
GTGTTATATATTCACGCTTTATAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGTATGGA
AGTAGGCAATTGTAGTATGGATTTGTTACCTGACTACCATTCAACACCAGTTGTTTCGCATTATT
ACCATTCAACCAGTTGTTTAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAA
TGACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCTTAGCA
Found at i:13329 original size:12 final size:12
Alignment explanation
Indices: 13308--13342 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
13298 GTGGCTAATA
*
13308 GTCCATACGTGG
1 GTCCAGACGTGG
13320 GTCCAGACGTGG
1 GTCCAGACGTGG
13332 GTCCAGACGTG
1 GTCCAGACGTG
13343 TCAGTCGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.20
Consensus pattern (12 bp):
GTCCAGACGTGG
Left flanking sequence: Indices 12808 -- 13307
GAGCCCCCGAAGAAACGCCGGGCGTTGTCGGAGCTGCCCAAGGAGAAAAAGCACGCGGGCAAGGT
GGTGACGAACGAGCTGATGAAAAAGACCATCTGCGAGCCCAACGAGTTGCAGCACACCGAGTTTG
GCGACGACCTGTACGACTTGATCAACTGTTTTGACATCCACGAGGCCGCTCCCGTGACCCCGCCC
AAGGCGGTGCGCATGCGCAAGCCGCTGTTGACGCGGATGAGAACGAACGACTCGGTGCGGAGCAG
AAAGAAGAACCTCGTCGAGCCCTACCTGTGTGTTATTGTCTGAGAAGATCAGGTGGGATTGCGGT
TCAGGAAATTACGATTCAGGTGGAAATACGATTCAGGTGGAATTACGGTATATCTACTCGGAATG
ACCACCCGGTACGATACTCGGGTTTGGATAGCGCCACCCGGCCCAAACAGGCAATGCGGGGCATG
CACCTGGGGTACAGACCAAAGACGCACGACGGAATGTGGCTAATA
Right flanking sequence: Indices 13343 -- 13842
TCAGTCGGTCCAGACGTGGTCTTCGTCAAACGTCAACCCCGGTTTGCGATTAAAAGCTGTTTTGC
CTGGTCTGACCAGCCAGGCTACAGCTACGCTCGTGTTATATATTCACGCTTTATAGGCTCTGCAG
GCAGCAGCCAATCAACGTTTTCATGGTATGGAAGTAGGCAATTGTAGTATGGATTTGTTACCTGA
CTACCATTCAACACCAGTTGTTTCGCATTATTACCATTCAACCAGTTGTTTAGCATTACTACCAT
TCAACCAGTTGTTTAGCATTACTACCATTCAATGACCAGTTATTTAGCATTTCAACCATTCAACC
AGTTGCTTAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCAATCAACACCTGTTGCT
TAGCATGACTACCATTCAATGACTAGTTGTTTAGCGTTACTACCATTCAATGACCAGTTGGTTAG
CATTATCATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTAT
Found at i:13649 original size:31 final size:29
Alignment explanation
Indices: 13537--13802 Score: 315
Period size: 28 Copynumber: 9.0 Consensus size: 29
13527 TTGTTACCTG
*
13537 ACTACCATTCAACACCAGTTGTTTCGCATT
1 ACTACCATTCAA-ACCAGTTGTTTAGCATT
*
13567 ATTACCATTC-AACCAGTTGTTTAGCATT
1 ACTACCATTCAAACCAGTTGTTTAGCATT
13595 ACTACCATTC-AACCAGTTGTTTAGCATT
1 ACTACCATTCAAACCAGTTGTTTAGCATT
*
13623 ACTACCATTCAATGACCAGTTATTTAGCATT
1 ACTACCATTCAA--ACCAGTTGTTTAGCATT
* * *
13654 TCAACCATTC-AACCAGTTGCTTAGCATT
1 ACTACCATTCAAACCAGTTGTTTAGCATT
13682 ACTACCATTC-AACCAGTTGTTTAGCATT
1 ACTACCATTCAAACCAGTTGTTTAGCATT
* * * *
13710 ACTACCAATCAACACCTGTTGCTTAGCATG
1 ACTACCATTCAA-ACCAGTTGTTTAGCATT
* *
13740 ACTACCATTCAATGACTAGTTGTTTAGCGTT
1 ACTACCATTCAA--ACCAGTTGTTTAGCATT
*
13771 ACTACCATTCAATGACCAGTTGGTTAGCATT
1 ACTACCATTCAA--ACCAGTTGTTTAGCATT
13802 A
1 A
13803 TCATTGAATT
Statistics
Matches: 205, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
28 102 0.50
29 3 0.01
30 35 0.17
31 65 0.32
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (29 bp):
ACTACCATTCAAACCAGTTGTTTAGCATT
Left flanking sequence: Indices 13037 -- 13536
GGATGAGAACGAACGACTCGGTGCGGAGCAGAAAGAAGAACCTCGTCGAGCCCTACCTGTGTGTT
ATTGTCTGAGAAGATCAGGTGGGATTGCGGTTCAGGAAATTACGATTCAGGTGGAAATACGATTC
AGGTGGAATTACGGTATATCTACTCGGAATGACCACCCGGTACGATACTCGGGTTTGGATAGCGC
CACCCGGCCCAAACAGGCAATGCGGGGCATGCACCTGGGGTACAGACCAAAGACGCACGACGGAA
TGTGGCTAATAGTCCATACGTGGGTCCAGACGTGGGTCCAGACGTGTCAGTCGGTCCAGACGTGG
TCTTCGTCAAACGTCAACCCCGGTTTGCGATTAAAAGCTGTTTTGCCTGGTCTGACCAGCCAGGC
TACAGCTACGCTCGTGTTATATATTCACGCTTTATAGGCTCTGCAGGCAGCAGCCAATCAACGTT
TTCATGGTATGGAAGTAGGCAATTGTAGTATGGATTTGTTACCTG
Right flanking sequence: Indices 13803 -- 14302
TCATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCC
GGGTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCATATATAGCCACTTACTCTGCCA
CTCTAGTACTCTACCGCTCTACCAGCCCACCACTCACCACTCTACCACTCACCACTCTACCACTC
ACCACTCTACCACTCTACCACTCACCACTCTATCACTTATTAATATTCACTCACCACTCTACCAG
TCTACTACCCCACCATTCCACCACTCTACCAGTCTACTGCCCCACCACTCGACCACTCTACCACT
CTACTACCCCGCCACATGAACCCACCACTCGTCCACTCTCCACTCTTCCATCTGCCACTCTCCAC
TCTACCACTCTACAAGCCACCAGCAATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTT
TTGTCCACCATCTATTCCTCCACCCACCATCTATTCCTCCACCCA
Found at i:13661 original size:87 final size:86
Alignment explanation
Indices: 13537--13802 Score: 336
Period size: 87 Copynumber: 3.0 Consensus size: 86
13527 TTGTTACCTG
*
13537 ACTACCATTCAACACCAGTTGTTTCGCATTAT-TACCATTCAACCAGTTGTTTAGCATTACTACC
1 ACTACCATTCAACACCAGTTGTTTAGCATT-TCTACCATTCAACCAGTTGTTTAGCATTACTACC
13601 ATTCAACCAGTTGTTTAGCATT
65 ATTCAACCAGTTGTTTAGCATT
* * * *
13623 ACTACCATTCAATGACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCTTAGCATTACTACC
1 ACTACCATTCAA-CACCAGTTGTTTAGCATTTCTACCATTCAACCAGTTGTTTAGCATTACTACC
13688 ATTCAACCAGTTGTTTAGCATT
65 ATTCAACCAGTTGTTTAGCATT
* * * ** * *
13710 ACTACCAATCAACACCTGTTGCTTAGCATGACTACCATTCAATGACTAGTTGTTTAGCGTTACTA
1 ACTACCATTCAACACCAGTTGTTTAGCATTTCTACCATTC-A--ACCAGTTGTTTAGCATTACTA
*
13775 CCATTCAATGACCAGTTGGTTAGCATT
63 CCATTC-A--ACCAGTTGTTTAGCATT
13802 A
1 A
13803 TCATTGAATT
Statistics
Matches: 155, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
86 34 0.22
87 79 0.51
89 24 0.15
90 1 0.01
92 17 0.11
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (86 bp):
ACTACCATTCAACACCAGTTGTTTAGCATTTCTACCATTCAACCAGTTGTTTAGCATTACTACCA
TTCAACCAGTTGTTTAGCATT
Left flanking sequence: Indices 13037 -- 13536
GGATGAGAACGAACGACTCGGTGCGGAGCAGAAAGAAGAACCTCGTCGAGCCCTACCTGTGTGTT
ATTGTCTGAGAAGATCAGGTGGGATTGCGGTTCAGGAAATTACGATTCAGGTGGAAATACGATTC
AGGTGGAATTACGGTATATCTACTCGGAATGACCACCCGGTACGATACTCGGGTTTGGATAGCGC
CACCCGGCCCAAACAGGCAATGCGGGGCATGCACCTGGGGTACAGACCAAAGACGCACGACGGAA
TGTGGCTAATAGTCCATACGTGGGTCCAGACGTGGGTCCAGACGTGTCAGTCGGTCCAGACGTGG
TCTTCGTCAAACGTCAACCCCGGTTTGCGATTAAAAGCTGTTTTGCCTGGTCTGACCAGCCAGGC
TACAGCTACGCTCGTGTTATATATTCACGCTTTATAGGCTCTGCAGGCAGCAGCCAATCAACGTT
TTCATGGTATGGAAGTAGGCAATTGTAGTATGGATTTGTTACCTG
Right flanking sequence: Indices 13803 -- 14302
TCATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCC
GGGTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCATATATAGCCACTTACTCTGCCA
CTCTAGTACTCTACCGCTCTACCAGCCCACCACTCACCACTCTACCACTCACCACTCTACCACTC
ACCACTCTACCACTCTACCACTCACCACTCTATCACTTATTAATATTCACTCACCACTCTACCAG
TCTACTACCCCACCATTCCACCACTCTACCAGTCTACTGCCCCACCACTCGACCACTCTACCACT
CTACTACCCCGCCACATGAACCCACCACTCGTCCACTCTCCACTCTTCCATCTGCCACTCTCCAC
TCTACCACTCTACAAGCCACCAGCAATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTT
TTGTCCACCATCTATTCCTCCACCCACCATCTATTCCTCCACCCA
Found at i:13952 original size:16 final size:16
Alignment explanation
Indices: 13923--14029 Score: 53
Period size: 15 Copynumber: 6.9 Consensus size: 16
13913 TATAGCCACT
*
13923 TACTCTGCCACTCTAG
1 TACTCTACCACTCTAG
* *
13939 TACTCTACCGCTCTAC
1 TACTCTACCACTCTAG
* * *
13955 CAGC-CCACCACTC-AC
1 TA-CTCTACCACTCTAG
* *
13970 CACTCTACCACTC-AC
1 TACTCTACCACTCTAG
* *
13985 CACTCTACCACTC-AC
1 TACTCTACCACTCTAG
* *
14000 CACTCTACCACTCTAC
1 TACTCTACCACTCTAG
*
14016 CACTC-ACCACTCTA
1 TACTCTACCACTCTA
14030 TCACTTATTA
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
14 1 0.01
15 51 0.63
16 28 0.35
17 1 0.01
ACGTcount: A:0.24, C:0.50, G:0.04, T:0.22
Consensus pattern (16 bp):
TACTCTACCACTCTAG
Left flanking sequence: Indices 13423 -- 13922
AGGCTACAGCTACGCTCGTGTTATATATTCACGCTTTATAGGCTCTGCAGGCAGCAGCCAATCAA
CGTTTTCATGGTATGGAAGTAGGCAATTGTAGTATGGATTTGTTACCTGACTACCATTCAACACC
AGTTGTTTCGCATTATTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAACCAGTTGTTTA
GCATTACTACCATTCAATGACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCTTAGCATTA
CTACCATTCAACCAGTTGTTTAGCATTACTACCAATCAACACCTGTTGCTTAGCATGACTACCAT
TCAATGACTAGTTGTTTAGCGTTACTACCATTCAATGACCAGTTGGTTAGCATTATCATTGAATT
TTGTTTATGGACGCGAAAGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCCGGGTTCATTG
ACCCTTTGAAAGCCAACCATTCCTGTCACCTCATATATAGCCACT
Right flanking sequence: Indices 14030 -- 14529
TCACTTATTAATATTCACTCACCACTCTACCAGTCTACTACCCCACCATTCCACCACTCTACCAG
TCTACTGCCCCACCACTCGACCACTCTACCACTCTACTACCCCGCCACATGAACCCACCACTCGT
CCACTCTCCACTCTTCCATCTGCCACTCTCCACTCTACCACTCTACAAGCCACCAGCAATCAAGT
AATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGTCCACCATCTATTCCTCCACCCACCATCT
ATTCCTCCACCCAACATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACCTTGTTA
TCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCACTATCCACCTCACCTTCTTCTTTCCACC
CTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACTTACAGTTGG
TGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGT
Found at i:13976 original size:23 final size:22
Alignment explanation
Indices: 13940--14025 Score: 102
Period size: 23 Copynumber: 3.8 Consensus size: 22
13930 CCACTCTAGT
*
13940 ACTCTACCGCTCTACCAGCCCACC
1 ACTCTACCACTC-ACCA-CCCACC
*
13964 ACTC-ACCACTCTACCACTCACC
1 ACTCTACCACTC-ACCACCCACC
*
13986 ACTCTACCACTCACCACTCTACC
1 ACTCTACCACTCACCAC-CCACC
14009 ACTCTACCACTCACCAC
1 ACTCTACCACTCACCAC
14026 TCTATCACTT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
22 14 0.25
23 38 0.68
24 4 0.07
ACGTcount: A:0.26, C:0.53, G:0.02, T:0.19
Consensus pattern (22 bp):
ACTCTACCACTCACCACCCACC
Left flanking sequence: Indices 13440 -- 13939
GTGTTATATATTCACGCTTTATAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGTATGGA
AGTAGGCAATTGTAGTATGGATTTGTTACCTGACTACCATTCAACACCAGTTGTTTCGCATTATT
ACCATTCAACCAGTTGTTTAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAA
TGACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCTTAGCATTACTACCATTCAACCAGTT
GTTTAGCATTACTACCAATCAACACCTGTTGCTTAGCATGACTACCATTCAATGACTAGTTGTTT
AGCGTTACTACCATTCAATGACCAGTTGGTTAGCATTATCATTGAATTTTGTTTATGGACGCGAA
AGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCCGGGTTCATTGACCCTTTGAAAGCCAAC
CATTCCTGTCACCTCATATATAGCCACTTACTCTGCCACTCTAGT
Right flanking sequence: Indices 14026 -- 14525
TCTATCACTTATTAATATTCACTCACCACTCTACCAGTCTACTACCCCACCATTCCACCACTCTA
CCAGTCTACTGCCCCACCACTCGACCACTCTACCACTCTACTACCCCGCCACATGAACCCACCAC
TCGTCCACTCTCCACTCTTCCATCTGCCACTCTCCACTCTACCACTCTACAAGCCACCAGCAATC
AAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGTCCACCATCTATTCCTCCACCCACC
ATCTATTCCTCCACCCAACATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACCTT
GTTATCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCACTATCCACCTCACCTTCTTCTTTC
CACCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACTTACAG
TTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCC
Found at i:13997 original size:30 final size:30
Alignment explanation
Indices: 13941--14131 Score: 140
Period size: 32 Copynumber: 6.2 Consensus size: 30
13931 CACTCTAGTA
* *
13941 CTCTACCGCTCTACCAGCCCACCACTC-ACCA
1 CTCTACCACTC-ACCA-CTCACCACTCTACCA
13972 CTCTACCACTCACCACTCTACCACTC-ACCA
1 CTCTACCACTCACCACTC-ACCACTCTACCA
*
14002 CTCTACCACTCTACCACTCACCACTCTATCA
1 CTCTACCACTC-ACCACTCACCACTCTACCA
** * *
14033 CT-TATTAAT-ATTCACTCACCACTCTACCA
1 CTCTACCACTCA-CCACTCACCACTCTACCA
* * * *
14062 GTCTACTACCCCACCATTCCACCACTCTACCA
1 CTCTACCA-CTCACCACT-CACCACTCTACCA
* *
14094 GTCTACTGC-CCCACCACTCGACCACTCTACCA
1 CTCTAC--CACTCACCACTC-ACCACTCTACCA
14126 CTCTAC
1 CTCTAC
14132 TACCCCGCCA
Statistics
Matches: 132, Mismatches: 17, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
28 1 0.01
29 19 0.14
30 41 0.31
31 26 0.20
32 45 0.34
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
CTCTACCACTCACCACTCACCACTCTACCA
Left flanking sequence: Indices 13441 -- 13940
TGTTATATATTCACGCTTTATAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGTATGGAA
GTAGGCAATTGTAGTATGGATTTGTTACCTGACTACCATTCAACACCAGTTGTTTCGCATTATTA
CCATTCAACCAGTTGTTTAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAAT
GACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCTTAGCATTACTACCATTCAACCAGTTG
TTTAGCATTACTACCAATCAACACCTGTTGCTTAGCATGACTACCATTCAATGACTAGTTGTTTA
GCGTTACTACCATTCAATGACCAGTTGGTTAGCATTATCATTGAATTTTGTTTATGGACGCGAAA
GCTATCACGTATGCAGCAGTCATCAGGAACGTATCCCGGGTTCATTGACCCTTTGAAAGCCAACC
ATTCCTGTCACCTCATATATAGCCACTTACTCTGCCACTCTAGTA
Right flanking sequence: Indices 14132 -- 14631
TACCCCGCCACATGAACCCACCACTCGTCCACTCTCCACTCTTCCATCTGCCACTCTCCACTCTA
CCACTCTACAAGCCACCAGCAATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGT
CCACCATCTATTCCTCCACCCACCATCTATTCCTCCACCCAACATATTCATCCACCTACATTGTT
CATCACCTATCCACCTGTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCA
CTATCCACCTCACCTTCTTCTTTCCACCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTG
TTTATATCGGCCACCTACTTACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACAC
CCCCTTGTGCGACTGGCCATACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACT
CCGGCTGCACCGTCACCAGGTGCACCCCGTACCGGTGCAAGATCT
Found at i:14034 original size:15 final size:15
Alignment explanation
Indices: 13961--14027 Score: 118
Period size: 15 Copynumber: 4.5 Consensus size: 15
13951 CTACCAGCCC
13961 ACCACTCACCACTCT
1 ACCACTCACCACTCT
13976 ACCACTCACCACTCT
1 ACCACTCACCACTCT
13991 ACCACTCACCACTCT
1 ACCACTCACCACTCT
14006 ACCACTCTACCACTC-
1 ACCACTC-ACCACTCT
14021 ACCACTC
1 ACCACTC
14028 TATCACTTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
15 44 0.86
16 7 0.14
ACGTcount: A:0.27, C:0.54, G:0.00, T:0.19
Consensus pattern (15 bp):
ACCACTCACCACTCT
Left flanking sequence: Indices 13461 -- 13960
TAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGTATGGAAGTAGGCAATTGTAGTATGGA
TTTGTTACCTGACTACCATTCAACACCAGTTGTTTCGCATTATTACCATTCAACCAGTTGTTTAG
CATTACTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAATGACCAGTTATTTAGCATTTC
AACCATTCAACCAGTTGCTTAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCAATCA
ACACCTGTTGCTTAGCATGACTACCATTCAATGACTAGTTGTTTAGCGTTACTACCATTCAATGA
CCAGTTGGTTAGCATTATCATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTATGCAGCAGT
CATCAGGAACGTATCCCGGGTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCATATAT
AGCCACTTACTCTGCCACTCTAGTACTCTACCGCTCTACCAGCCC
Right flanking sequence: Indices 14028 -- 14527
TATCACTTATTAATATTCACTCACCACTCTACCAGTCTACTACCCCACCATTCCACCACTCTACC
AGTCTACTGCCCCACCACTCGACCACTCTACCACTCTACTACCCCGCCACATGAACCCACCACTC
GTCCACTCTCCACTCTTCCATCTGCCACTCTCCACTCTACCACTCTACAAGCCACCAGCAATCAA
GTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGTCCACCATCTATTCCTCCACCCACCAT
CTATTCCTCCACCCAACATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACCTTGT
TATCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCACTATCCACCTCACCTTCTTCTTTCCA
CCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACTTACAGTT
GGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTT
Found at i:14066 original size:8 final size:8
Alignment explanation
Indices: 14045--14205 Score: 62
Period size: 8 Copynumber: 20.0 Consensus size: 8
14035 TATTAATATT
14045 CACTC-AC
1 CACTCTAC
14052 CACTCTAC
1 CACTCTAC
*
14060 CAGTCTAC
1 CACTCTAC
* * *
14068 TACCCCAC
1 CACTCTAC
* *
14076 CATTCCAC
1 CACTCTAC
14084 CACTCTAC
1 CACTCTAC
*
14092 CAGTCTAC
1 CACTCTAC
** * *
14100 TGCCCCAC
1 CACTCTAC
*
14108 CACTCGAC
1 CACTCTAC
14116 CACTCTAC
1 CACTCTAC
14124 CACTCTAC
1 CACTCTAC
* * **
14132 TACCCCGC
1 CACTCTAC
*
14140 CACATGAACCCAC
1 CAC-T----CTAC
14153 CACTCGT-C
1 CACTC-TAC
14161 CACTCT-C
1 CACTCTAC
*
14168 CACTCTTC
1 CACTCTAC
*
14176 CA-TCTGC
1 CACTCTAC
14183 CACTCT-C
1 CACTCTAC
14190 CACTCTAC
1 CACTCTAC
14198 CACTCTAC
1 CACTCTAC
14206 AAGCCACCAG
Statistics
Matches: 114, Mismatches: 30, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
7 26 0.23
8 81 0.71
12 1 0.01
13 6 0.05
ACGTcount: A:0.22, C:0.51, G:0.05, T:0.22
Consensus pattern (8 bp):
CACTCTAC
Left flanking sequence: Indices 13545 -- 14044
TCAACACCAGTTGTTTCGCATTATTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAACCA
GTTGTTTAGCATTACTACCATTCAATGACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCT
TAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCAATCAACACCTGTTGCTTAGCATG
ACTACCATTCAATGACTAGTTGTTTAGCGTTACTACCATTCAATGACCAGTTGGTTAGCATTATC
ATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCCGG
GTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCATATATAGCCACTTACTCTGCCACT
CTAGTACTCTACCGCTCTACCAGCCCACCACTCACCACTCTACCACTCACCACTCTACCACTCAC
CACTCTACCACTCTACCACTCACCACTCTATCACTTATTAATATT
Right flanking sequence: Indices 14206 -- 14705
AAGCCACCAGCAATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGTCCACCATCT
ATTCCTCCACCCACCATCTATTCCTCCACCCAACATATTCATCCACCTACATTGTTCATCACCTA
TCCACCTGTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCACTATCCACC
TCACCTTCTTCTTTCCACCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCG
GCCACCTACTTACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTG
CGACTGGCCATACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCA
CCGTCACCAGGTGCACCCCGTACCGGTGCAAGATCTCGCGCACAGAGCCCACCACCTGGGTGAAC
GCCTTCTGGTTCAACTCGCCGGGCGCACAGTCGTCCACCAATTGC
Found at i:14087 original size:32 final size:32
Alignment explanation
Indices: 14045--14142 Score: 144
Period size: 32 Copynumber: 3.1 Consensus size: 32
14035 TATTAATATT
14045 CACT-CACCACTCTACCAGTCTACTACCCCAC
1 CACTCCACCACTCTACCAGTCTACTACCCCAC
* *
14076 CATTCCACCACTCTACCAGTCTACTGCCCCAC
1 CACTCCACCACTCTACCAGTCTACTACCCCAC
* * *
14108 CACTCGACCACTCTACCACTCTACTACCCCGC
1 CACTCCACCACTCTACCAGTCTACTACCCCAC
14140 CAC
1 CAC
14143 ATGAACCCAC
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
31 3 0.05
32 56 0.95
ACGTcount: A:0.23, C:0.52, G:0.05, T:0.19
Consensus pattern (32 bp):
CACTCCACCACTCTACCAGTCTACTACCCCAC
Left flanking sequence: Indices 13545 -- 14044
TCAACACCAGTTGTTTCGCATTATTACCATTCAACCAGTTGTTTAGCATTACTACCATTCAACCA
GTTGTTTAGCATTACTACCATTCAATGACCAGTTATTTAGCATTTCAACCATTCAACCAGTTGCT
TAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACCAATCAACACCTGTTGCTTAGCATG
ACTACCATTCAATGACTAGTTGTTTAGCGTTACTACCATTCAATGACCAGTTGGTTAGCATTATC
ATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCCGG
GTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCATATATAGCCACTTACTCTGCCACT
CTAGTACTCTACCGCTCTACCAGCCCACCACTCACCACTCTACCACTCACCACTCTACCACTCAC
CACTCTACCACTCTACCACTCACCACTCTATCACTTATTAATATT
Right flanking sequence: Indices 14143 -- 14642
ATGAACCCACCACTCGTCCACTCTCCACTCTTCCATCTGCCACTCTCCACTCTACCACTCTACAA
GCCACCAGCAATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGTCCACCATCTAT
TCCTCCACCCACCATCTATTCCTCCACCCAACATATTCATCCACCTACATTGTTCATCACCTATC
CACCTGTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCACTATCCACCTC
ACCTTCTTCTTTCCACCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGC
CACCTACTTACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTGCG
ACTGGCCATACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACC
GTCACCAGGTGCACCCCGTACCGGTGCAAGATCTCGCGCACAGAG
Found at i:14172 original size:15 final size:15
Alignment explanation
Indices: 14151--14203 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
14141 ACATGAACCC
14151 ACCACTCGTCCACTCT
1 ACCACTC-TCCACTCT
14167 -CCACTCTTCCA-TCT
1 ACCACTC-TCCACTCT
*
14181 GCCACTCTCCACTCT
1 ACCACTCTCCACTCT
14196 ACCACTCT
1 ACCACTCT
14204 ACAAGCCACC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 7 0.21
15 26 0.79
ACGTcount: A:0.17, C:0.51, G:0.04, T:0.28
Consensus pattern (15 bp):
ACCACTCTCCACTCT
Left flanking sequence: Indices 13651 -- 14150
ATTTCAACCATTCAACCAGTTGCTTAGCATTACTACCATTCAACCAGTTGTTTAGCATTACTACC
AATCAACACCTGTTGCTTAGCATGACTACCATTCAATGACTAGTTGTTTAGCGTTACTACCATTC
AATGACCAGTTGGTTAGCATTATCATTGAATTTTGTTTATGGACGCGAAAGCTATCACGTATGCA
GCAGTCATCAGGAACGTATCCCGGGTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCA
TATATAGCCACTTACTCTGCCACTCTAGTACTCTACCGCTCTACCAGCCCACCACTCACCACTCT
ACCACTCACCACTCTACCACTCACCACTCTACCACTCTACCACTCACCACTCTATCACTTATTAA
TATTCACTCACCACTCTACCAGTCTACTACCCCACCATTCCACCACTCTACCAGTCTACTGCCCC
ACCACTCGACCACTCTACCACTCTACTACCCCGCCACATGAACCC
Right flanking sequence: Indices 14204 -- 14703
ACAAGCCACCAGCAATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGTCCACCAT
CTATTCCTCCACCCACCATCTATTCCTCCACCCAACATATTCATCCACCTACATTGTTCATCACC
TATCCACCTGTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTGTTTGTTCATCCACTATCCA
CCTCACCTTCTTCTTTCCACCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATAT
CGGCCACCTACTTACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTG
TGCGACTGGCCATACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTG
CACCGTCACCAGGTGCACCCCGTACCGGTGCAAGATCTCGCGCACAGAGCCCACCACCTGGGTGA
ACGCCTTCTGGTTCAACTCGCCGGGCGCACAGTCGTCCACCAATT
Found at i:14284 original size:19 final size:19
Alignment explanation
Indices: 14262--14302 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
14252 ATGTTTTTGT
14262 CCACCATCTATTCCTCCAC
1 CCACCATCTATTCCTCCAC
14281 CCACCATCTATTCCTCCAC
1 CCACCATCTATTCCTCCAC
14300 CCA
1 CCA
14303 ACATATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.54, G:0.00, T:0.24
Consensus pattern (19 bp):
CCACCATCTATTCCTCCAC
Left flanking sequence: Indices 13762 -- 14261
TTTAGCGTTACTACCATTCAATGACCAGTTGGTTAGCATTATCATTGAATTTTGTTTATGGACGC
GAAAGCTATCACGTATGCAGCAGTCATCAGGAACGTATCCCGGGTTCATTGACCCTTTGAAAGCC
AACCATTCCTGTCACCTCATATATAGCCACTTACTCTGCCACTCTAGTACTCTACCGCTCTACCA
GCCCACCACTCACCACTCTACCACTCACCACTCTACCACTCACCACTCTACCACTCTACCACTCA
CCACTCTATCACTTATTAATATTCACTCACCACTCTACCAGTCTACTACCCCACCATTCCACCAC
TCTACCAGTCTACTGCCCCACCACTCGACCACTCTACCACTCTACTACCCCGCCACATGAACCCA
CCACTCGTCCACTCTCCACTCTTCCATCTGCCACTCTCCACTCTACCACTCTACAAGCCACCAGC
AATCAAGTAATCCAACGTCTATTCGTCCACCCTCTATGTTTTTGT
Right flanking sequence: Indices 14303 -- 14802
ACATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACCTTGTTATCCACCTATCCAT
CCTTCCTTCTTGTTTGTTCATCCACTATCCACCTCACCTTCTTCTTTCCACCCTCTTTACCTCTG
TTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACTTACAGTTGGTGGTGTCGCAGTT
GGCCATCTCGTCCACCGCACACACCCCCTTGTGCGACTGGCCATACGAGTCCGCCAACTCGGTCG
CCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACCGTCACCAGGTGCACCCCGTACCGGTGCAAG
ATCTCGCGCACAGAGCCCACCACCTGGGTGAACGCCTTCTGGTTCAACTCGCCGGGCGCACAGTC
GTCCACCAATTGCAAGTGCAACAGCGCGATCAAAATGTCCTCGTTCAAGTTCCAGATGTGGAAGT
CGTGCACCAGCTTCACCTGGGGAATCTGCAAGATCTTCTGTAAGA
Found at i:14408 original size:32 final size:32
Alignment explanation
Indices: 14349--14410 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
14339 ACCTGTTACC
*
14349 TTGTTATCCACCTATCCATCCTTCCTTCTTGT
1 TTGTTATCCACCTATCCATCCTACCTTCTTGT
14381 TTGTTCATCCA-CTATCCA-CCTCACCTTCTT
1 TTGTT-ATCCACCTATCCATCCT-ACCTTCTT
14411 CTTTCCACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 3 0.11
32 19 0.70
33 5 0.19
ACGTcount: A:0.15, C:0.37, G:0.05, T:0.44
Consensus pattern (32 bp):
TTGTTATCCACCTATCCATCCTACCTTCTTGT
Left flanking sequence: Indices 13849 -- 14348
GTCATCAGGAACGTATCCCGGGTTCATTGACCCTTTGAAAGCCAACCATTCCTGTCACCTCATAT
ATAGCCACTTACTCTGCCACTCTAGTACTCTACCGCTCTACCAGCCCACCACTCACCACTCTACC
ACTCACCACTCTACCACTCACCACTCTACCACTCTACCACTCACCACTCTATCACTTATTAATAT
TCACTCACCACTCTACCAGTCTACTACCCCACCATTCCACCACTCTACCAGTCTACTGCCCCACC
ACTCGACCACTCTACCACTCTACTACCCCGCCACATGAACCCACCACTCGTCCACTCTCCACTCT
TCCATCTGCCACTCTCCACTCTACCACTCTACAAGCCACCAGCAATCAAGTAATCCAACGTCTAT
TCGTCCACCCTCTATGTTTTTGTCCACCATCTATTCCTCCACCCACCATCTATTCCTCCACCCAA
CATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACC
Right flanking sequence: Indices 14411 -- 14910
CTTTCCACCCTCTTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACT
TACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTGCGACTGGCCA
TACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACCGTCACCAG
GTGCACCCCGTACCGGTGCAAGATCTCGCGCACAGAGCCCACCACCTGGGTGAACGCCTTCTGGT
TCAACTCGCCGGGCGCACAGTCGTCCACCAATTGCAAGTGCAACAGCGCGATCAAAATGTCCTCG
TTCAAGTTCCAGATGTGGAAGTCGTGCACCAGCTTCACCTGGGGAATCTGCAAGATCTTCTGTAA
GATGGCGTTCAGGTCGACGTTGGGCGGGGTCGCCTGCAACAAGATCTTCAGTGCCTTGCGGCAGA
GCGGCAACGCCAGCGAGAAGATGATCGCGGTGATCACGAGTGACG
Found at i:16421 original size:14 final size:14
Alignment explanation
Indices: 16384--16446 Score: 63
Period size: 14 Copynumber: 4.5 Consensus size: 14
16374 TTTAATGCTT
*
16384 AGGCAGTCTCGGTG
1 AGGCTGTCTCGGTG
* ** *
16398 GGGCAATCTCCGTG
1 AGGCTGTCTCGGTG
16412 AGGCTGTCTCGGTG
1 AGGCTGTCTCGGTG
**
16426 AGAATGTCTCGGTG
1 AGGCTGTCTCGGTG
16440 AGGCTGT
1 AGGCTGT
16447 TTCACGTCGG
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.14, C:0.21, G:0.40, T:0.25
Consensus pattern (14 bp):
AGGCTGTCTCGGTG
Left flanking sequence: Indices 15884 -- 16383
AAATACGTATCTGTAGCTAAGCCGTTATTTAGGGTTTGGCAACATAAGCTTCCGAGCAGCCGGTT
TGTGTCACAAACGGTGGGCGTGGCAGCAACCGATTGTTGACGCAGGCTTAGCTCGGGTTGGCCGT
TTGCAGTAGGCGATTTTCGTAGCGCTAGGTGGTTGCAAACGGCTGTCACTGTGGGGTGCACCTGC
CGGCCCGGTTTCGCAGTGTAGGAGATGCGTGCTTAACCCCGAGACTGGGCAAGCCTCATTTGGCA
CGCCTCATTTGTGGACGGAAGTCCACCCCAGTGTGGTGGCCCAGCTCGACGCACTGCGTGACGGC
CACCATTGTCTGGCGTGCATCGATTCCGTCCGATGGTGCGTGCGATCACCTGGCAGTGATCTGAA
ACACGCCCGGAGCGAGTGTGACAGCCGGGTCGGCCCGACCTGGTGGGCCCGAGGGTGTGGGGCCA
CTACACTAGCGCTAGTCCCGTTCGGGCACGTGGATTTTAATGCTT
Right flanking sequence: Indices 16447 -- 16946
TTCACGTCGGAGTAAAATCAGTCAAAAATAAGGGGAACATCAGTGGGGGAACATCCGTGGGGGTA
TACAATGGGTGTTTGATTATATGAAACTGTAATGGAGAGGCAGACGTGAAACAGAGACGAGGTGG
AGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGGGTGATGCTGAGACGAGGCTG
ATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGAATGCAGGGTAAACTAGCGGG
TCGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACTGATAGTGGTTCTTTTCGTGG
CATTCTACGTGGGATCGGATTACCCAATATTGCAACCGCCTCGAACTGCGCATCTGCGTCATTAG
CCGTATGGCTTAGAGGCTAGATAGGGGATGAACCTTTTAGACTGACTAAAGAAACGGAGAAACGA
GATACCAGAGGAACAAGTAAAAGAGATACAAGGAAAAGAGAAACA
Found at i:16508 original size:13 final size:14
Alignment explanation
Indices: 16478--16509 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
16468 TCAAAAATAA
16478 GGGGAACATCAGTG
1 GGGGAACATCAGTG
*
16492 GGGGAACATCCGTG
1 GGGGAACATCAGTG
16506 GGGG
1 GGGG
16510 TATACAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.50, T:0.12
Consensus pattern (14 bp):
GGGGAACATCAGTG
Left flanking sequence: Indices 15978 -- 16477
CCGATTGTTGACGCAGGCTTAGCTCGGGTTGGCCGTTTGCAGTAGGCGATTTTCGTAGCGCTAGG
TGGTTGCAAACGGCTGTCACTGTGGGGTGCACCTGCCGGCCCGGTTTCGCAGTGTAGGAGATGCG
TGCTTAACCCCGAGACTGGGCAAGCCTCATTTGGCACGCCTCATTTGTGGACGGAAGTCCACCCC
AGTGTGGTGGCCCAGCTCGACGCACTGCGTGACGGCCACCATTGTCTGGCGTGCATCGATTCCGT
CCGATGGTGCGTGCGATCACCTGGCAGTGATCTGAAACACGCCCGGAGCGAGTGTGACAGCCGGG
TCGGCCCGACCTGGTGGGCCCGAGGGTGTGGGGCCACTACACTAGCGCTAGTCCCGTTCGGGCAC
GTGGATTTTAATGCTTAGGCAGTCTCGGTGGGGCAATCTCCGTGAGGCTGTCTCGGTGAGAATGT
CTCGGTGAGGCTGTTTCACGTCGGAGTAAAATCAGTCAAAAATAA
Right flanking sequence: Indices 16510 -- 17009
TATACAATGGGTGTTTGATTATATGAAACTGTAATGGAGAGGCAGACGTGAAACAGAGACGAGGT
GGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGGGTGATGCTGAGACGAGGC
TGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGAATGCAGGGTAAACTAGCG
GGTCGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACTGATAGTGGTTCTTTTCGT
GGCATTCTACGTGGGATCGGATTACCCAATATTGCAACCGCCTCGAACTGCGCATCTGCGTCATT
AGCCGTATGGCTTAGAGGCTAGATAGGGGATGAACCTTTTAGACTGACTAAAGAAACGGAGAAAC
GAGATACCAGAGGAACAAGTAAAAGAGATACAAGGAAAAGAGAAACAAGAAAAGAAACAAGCCAA
GAGAAACAAGACAAGAGAAACAAAAGCAAGAGAAATAAAAACAGA
Found at i:16953 original size:14 final size:14
Alignment explanation
Indices: 16908--17013 Score: 85
Period size: 15 Copynumber: 7.5 Consensus size: 14
16898 ACGAGATACC
*
16908 AGAGGAACAAGTAAA
1 AGAGAAACAAG-AAA
*
16923 AGAGATACAAGGAAA
1 AGAGAAACAA-GAAA
16938 AGAGAAACAAG-AA
1 AGAGAAACAAGAAA
**
16951 A-AGAAACAAGCCA
1 AGAGAAACAAGAAA
*
16964 AGAGAAACAAGACA
1 AGAGAAACAAGAAA
16978 AGAGAAACAA-AAGCA
1 AGAGAAACAAGAA--A
*
16993 AGAGAAATAA-AAA
1 AGAGAAACAAGAAA
17006 CAGAGAAA
1 -AGAGAAA
17014 TAAAAACAGA
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
12 9 0.12
13 7 0.09
14 29 0.37
15 32 0.41
16 1 0.01
ACGTcount: A:0.65, C:0.10, G:0.22, T:0.03
Consensus pattern (14 bp):
AGAGAAACAAGAAA
Left flanking sequence: Indices 16408 -- 16907
CGTGAGGCTGTCTCGGTGAGAATGTCTCGGTGAGGCTGTTTCACGTCGGAGTAAAATCAGTCAAA
AATAAGGGGAACATCAGTGGGGGAACATCCGTGGGGGTATACAATGGGTGTTTGATTATATGAAA
CTGTAATGGAGAGGCAGACGTGAAACAGAGACGAGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAA
TTATGGGGCCATCGGTGGGGTGATGCTGAGACGAGGCTGATAGACGAGCGCACAATCTGGTGTGC
ATTTCCGTAACGAGCCAGAATGCAGGGTAAACTAGCGGGTCGAAAGGGGAAGGGAGCTCGTAGCG
GGGGATTCGTAGCGGGACTGATAGTGGTTCTTTTCGTGGCATTCTACGTGGGATCGGATTACCCA
ATATTGCAACCGCCTCGAACTGCGCATCTGCGTCATTAGCCGTATGGCTTAGAGGCTAGATAGGG
GATGAACCTTTTAGACTGACTAAAGAAACGGAGAAACGAGATACC
Right flanking sequence: Indices 17014 -- 17513
TAAAAACAGAAACAAATGTAGAGAAACAAGAGAAATAAGGACAGGGAAACAAAAACAAGAGAAAC
CTGAAAACCCAAACAAACCTGAAAATCCAGTTGTATGCTTAAACGTTGCATTGGACTGCAAAACA
CTGCAACCCGCTAAAAGAGGCGCTTGGTTACTTGTGGAGCATACTTTAAGCCCCTTAGTCACTGT
GGCGCTCAATGCCCCTGAAATCACTTGGGGTAGTCGCTACCATAGAGATTTCCCCAGAAGCTCAT
TGAGACAAGTAGATCTATATCACACAATCATGACAATCGCACTGGAGTGGCGCTACTCTCCATTC
CGTTCCACTTCTCCAGTCACGATCTAATTTCCACAGGCTCTCTACAATCCAATCTCTTCCACCCT
ACACAGTTATCATTGTAACCGTTTATCTCTCAAATCTTCACGCTAGTCCCTATACGTTCGCACTA
GTCTCCACCGTCACGCTTATCTTCGCACTAGACTATTCTTCAGAC
Found at i:17014 original size:14 final size:14
Alignment explanation
Indices: 16978--17023 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
16968 AAACAAGACA
* *
16978 AGAGAAACAAAAGC
1 AGAGAAATAAAAAC
16992 AAGAGAAATAAAAAC
1 -AGAGAAATAAAAAC
17007 AGAGAAATAAAAAC
1 AGAGAAATAAAAAC
17021 AGA
1 AGA
17024 AACAAATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.70, C:0.09, G:0.17, T:0.04
Consensus pattern (14 bp):
AGAGAAATAAAAAC
Left flanking sequence: Indices 16478 -- 16977
GGGGAACATCAGTGGGGGAACATCCGTGGGGGTATACAATGGGTGTTTGATTATATGAAACTGTA
ATGGAGAGGCAGACGTGAAACAGAGACGAGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATG
GGGCCATCGGTGGGGTGATGCTGAGACGAGGCTGATAGACGAGCGCACAATCTGGTGTGCATTTC
CGTAACGAGCCAGAATGCAGGGTAAACTAGCGGGTCGAAAGGGGAAGGGAGCTCGTAGCGGGGGA
TTCGTAGCGGGACTGATAGTGGTTCTTTTCGTGGCATTCTACGTGGGATCGGATTACCCAATATT
GCAACCGCCTCGAACTGCGCATCTGCGTCATTAGCCGTATGGCTTAGAGGCTAGATAGGGGATGA
ACCTTTTAGACTGACTAAAGAAACGGAGAAACGAGATACCAGAGGAACAAGTAAAAGAGATACAA
GGAAAAGAGAAACAAGAAAAGAAACAAGCCAAGAGAAACAAGACA
Right flanking sequence: Indices 17024 -- 17523
AACAAATGTAGAGAAACAAGAGAAATAAGGACAGGGAAACAAAAACAAGAGAAACCTGAAAACCC
AAACAAACCTGAAAATCCAGTTGTATGCTTAAACGTTGCATTGGACTGCAAAACACTGCAACCCG
CTAAAAGAGGCGCTTGGTTACTTGTGGAGCATACTTTAAGCCCCTTAGTCACTGTGGCGCTCAAT
GCCCCTGAAATCACTTGGGGTAGTCGCTACCATAGAGATTTCCCCAGAAGCTCATTGAGACAAGT
AGATCTATATCACACAATCATGACAATCGCACTGGAGTGGCGCTACTCTCCATTCCGTTCCACTT
CTCCAGTCACGATCTAATTTCCACAGGCTCTCTACAATCCAATCTCTTCCACCCTACACAGTTAT
CATTGTAACCGTTTATCTCTCAAATCTTCACGCTAGTCCCTATACGTTCGCACTAGTCTCCACCG
TCACGCTTATCTTCGCACTAGACTATTCTTCAGACTACTTTTCAT
Found at i:17648 original size:21 final size:21
Alignment explanation
Indices: 17624--17665 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
17614 CTTCACACTG
17624 GTCTTCGCACTA-GTCTATTCC
1 GTCTTCGCAC-AGGTCTATTCC
*
17645 GTCTTTGCACAGGTCTATTCC
1 GTCTTCGCACAGGTCTATTCC
17666 CCACACTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.14, C:0.31, G:0.17, T:0.38
Consensus pattern (21 bp):
GTCTTCGCACAGGTCTATTCC
Left flanking sequence: Indices 17124 -- 17623
TTGCATTGGACTGCAAAACACTGCAACCCGCTAAAAGAGGCGCTTGGTTACTTGTGGAGCATACT
TTAAGCCCCTTAGTCACTGTGGCGCTCAATGCCCCTGAAATCACTTGGGGTAGTCGCTACCATAG
AGATTTCCCCAGAAGCTCATTGAGACAAGTAGATCTATATCACACAATCATGACAATCGCACTGG
AGTGGCGCTACTCTCCATTCCGTTCCACTTCTCCAGTCACGATCTAATTTCCACAGGCTCTCTAC
AATCCAATCTCTTCCACCCTACACAGTTATCATTGTAACCGTTTATCTCTCAAATCTTCACGCTA
GTCCCTATACGTTCGCACTAGTCTCCACCGTCACGCTTATCTTCGCACTAGACTATTCTTCAGAC
TACTTTTCATCCGTTACTCTCCATTCCGTACCAGTCTCTATCCCGTTTCACCGATCATAAATCGT
CCTGTTTCTCTCCTTCGAACTAGTTCATTCCCACTCTTCACACTG
Right flanking sequence: Indices 17666 -- 18165
CCACACTCTTCCATTCGCACTCTCTCACTGATTCCTTCCTACTATCTCCTCCACACTAGTCATCT
CTACTCTCTAACCGCGAACTTCTATTATAAAAATGTCTCTATAAAAACCCAGTTTCATAAGGAGG
CAACAACCAAAGCGTCTTCACGGCTAAAGCCAAAAAAAAAGCCAAAAAAAAAAAATGGAGCGTCA
AGGTAGCAGGTCCCCTACAGTAACCCAAAGGGGCACCTAGGGACCTACGGGCTTACTTCGACGAC
CCGATGAGGTCGGAAAACGAGATTTTCTGGCCTTGGGGCACCACCGGAGCGGCGTAGGGGGGCGG
GTGTTGGAAGTGGGTCACGTAGGGCACCGCGCCCGCGGGCCCAGCACCAGGCTGGGGCGGGTACA
TGATGTAGCCCTGCGGGTTGACCTGGTAGGTGAACCCCGACTGGATGTTGGCGGGCATGTTGGGC
ACCATCATCGGGGGCATCATCGGGTACGCCCCCATCGCCGGGTTG
Found at i:17848 original size:13 final size:12
Alignment explanation
Indices: 17821--17847 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
17811 CTTCACGGCT
17821 AAAGCCAAAAAA
1 AAAGCCAAAAAA
17833 AAAGCCAAAAAA
1 AAAGCCAAAAAA
17845 AAA
1 AAA
17848 AAATGGAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.15, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAGCCAAAAAA
Left flanking sequence: Indices 17321 -- 17820
TGGCGCTACTCTCCATTCCGTTCCACTTCTCCAGTCACGATCTAATTTCCACAGGCTCTCTACAA
TCCAATCTCTTCCACCCTACACAGTTATCATTGTAACCGTTTATCTCTCAAATCTTCACGCTAGT
CCCTATACGTTCGCACTAGTCTCCACCGTCACGCTTATCTTCGCACTAGACTATTCTTCAGACTA
CTTTTCATCCGTTACTCTCCATTCCGTACCAGTCTCTATCCCGTTTCACCGATCATAAATCGTCC
TGTTTCTCTCCTTCGAACTAGTTCATTCCCACTCTTCACACTGGTCTTCGCACTAGTCTATTCCG
TCTTTGCACAGGTCTATTCCCCACACTCTTCCATTCGCACTCTCTCACTGATTCCTTCCTACTAT
CTCCTCCACACTAGTCATCTCTACTCTCTAACCGCGAACTTCTATTATAAAAATGTCTCTATAAA
AACCCAGTTTCATAAGGAGGCAACAACCAAAGCGTCTTCACGGCT
Right flanking sequence: Indices 17848 -- 18347
AAATGGAGCGTCAAGGTAGCAGGTCCCCTACAGTAACCCAAAGGGGCACCTAGGGACCTACGGGC
TTACTTCGACGACCCGATGAGGTCGGAAAACGAGATTTTCTGGCCTTGGGGCACCACCGGAGCGG
CGTAGGGGGGCGGGTGTTGGAAGTGGGTCACGTAGGGCACCGCGCCCGCGGGCCCAGCACCAGGC
TGGGGCGGGTACATGATGTAGCCCTGCGGGTTGACCTGGTAGGTGAACCCCGACTGGATGTTGGC
GGGCATGTTGGGCACCATCATCGGGGGCATCATCGGGTACGCCCCCATCGCCGGGTTGGGAGCCA
TGGGCATCGCCCCGTTGGGAGCCCGGCTCGCCTGGGGGGTCAGCTGGTGGGGGGTGGCGGGCACC
GACCCCAGCGGGTAGGCGGTGACGGCGTTTTTGGGGGGCAGCTTCAGGAACAGCGGTTTCGGGAG
CGCCACCGCCTCGGGCAGCAGGTGGAACAGCCCGCCGGCGTACAG
Found at i:19268 original size:11 final size:11
Alignment explanation
Indices: 19254--19281 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
19244 CGTGGGGTAG
19254 GGTGCAACCCA
1 GGTGCAACCCA
19265 GGTGCAACCCA
1 GGTGCAACCCA
19276 GGTGCA
1 GGTGCA
19282 CCTATTGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.32, G:0.32, T:0.11
Consensus pattern (11 bp):
GGTGCAACCCA
Left flanking sequence: Indices 18754 -- 19253
GGGCATTGGGGGCCCGGGCGGGTGGTTCCACGGTGTTTTTGGCGGGTTGGGTGGTGCGGGTGCGG
TGCTGGCGGGGTGGCTTTGTGGGCGCTACGTGGTTTCGTTTGTTGTTGTTTGTGACTAATCGGTT
GCAAAATGGCTGCAAATCCACCATCGCGCACAGGGCACACGCACACGCACGGCACCGCCGTCGCG
CCGGTGGGAGAAGCTACGGGGGCCGATACAGTGGTCTACGGGGTTGTGTATGGGTGGCTGGGGTG
TCACGCCGTCCGGTGGGGGCGGCTCGCCACCCGGGAGCCTGCCCGGTGACTCAATGGTGCTTATC
ATATGACATTTATAGGGGTAGTGTAAACACGTTGCACGCACTGCGTGGGTGCGTTTTGAATGACT
CCTGCGCCCCATGGGGCCACTGACGGTGGCAACTGCTGCTACGACAGACGGACAACTACTGGCGG
TGTTTATTGAATGCATGCTTGCAAGGTGGGTGATACGTGGGGTAG
Right flanking sequence: Indices 19282 -- 19781
CCTATTGTGCAAGGCGCGGCACGCATGATCACCAATGCAAGAGAAGGTGGTTGTGGATCGGTCGA
AAAGGTACGTAAGTAGTCTTGTTTGTTCTGAAAGCGGTTGGGTGGTGTGGGTGGTGTGGGAGGTC
GGGAGGTGAAGTGAAGGAATGGGTCAATTGTATTGTGAGCCAATGATACCAAAAGGATTAGCCAA
TGGTTGTGGTGGATAGTGGAAAAGAACAAGTTAAGGAAGGGAGTTAGTGAATTGAATGAGTGTGT
GAGACGTGCGAGTTAGTGAGGTGGCAATTGACCACCGTAGGAGCCATTGACCACCGTAATAGCCA
TTGACCGTAGTGGCCATTGGCCACCGTAGTAGCCATTGGCCACAGCACACGCACTGGACACGCAC
CACACCCACACCACACCCACCACTCACGACACATAGATCCCAGAAACACCAATCATCCCCATCCC
AACACAACACCACACCATCGCCCGGTTAAGCAGCCCACCGAAACT
Found at i:19592 original size:19 final size:19
Alignment explanation
Indices: 19568--19649 Score: 82
Period size: 19 Copynumber: 4.5 Consensus size: 19
19558 TGAGGTGGCA
19568 ATTGACCACCGTAGGAGCC
1 ATTGACCACCGTAGGAGCC
**
19587 ATTGACCACCGTAATAGCC
1 ATTGACCACCGTAGGAGCC
19606 ATTG---ACCGTAGTG-GCC
1 ATTGACCACCGTAG-GAGCC
* *
19622 ATTGGCCACCGTAGTAGCC
1 ATTGACCACCGTAGGAGCC
*
19641 ATTGGCCAC
1 ATTGACCAC
19650 AGCACACGCA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
16 13 0.25
19 40 0.75
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (19 bp):
ATTGACCACCGTAGGAGCC
Left flanking sequence: Indices 19068 -- 19567
TGGTGCTTATCATATGACATTTATAGGGGTAGTGTAAACACGTTGCACGCACTGCGTGGGTGCGT
TTTGAATGACTCCTGCGCCCCATGGGGCCACTGACGGTGGCAACTGCTGCTACGACAGACGGACA
ACTACTGGCGGTGTTTATTGAATGCATGCTTGCAAGGTGGGTGATACGTGGGGTAGGGTGCAACC
CAGGTGCAACCCAGGTGCACCTATTGTGCAAGGCGCGGCACGCATGATCACCAATGCAAGAGAAG
GTGGTTGTGGATCGGTCGAAAAGGTACGTAAGTAGTCTTGTTTGTTCTGAAAGCGGTTGGGTGGT
GTGGGTGGTGTGGGAGGTCGGGAGGTGAAGTGAAGGAATGGGTCAATTGTATTGTGAGCCAATGA
TACCAAAAGGATTAGCCAATGGTTGTGGTGGATAGTGGAAAAGAACAAGTTAAGGAAGGGAGTTA
GTGAATTGAATGAGTGTGTGAGACGTGCGAGTTAGTGAGGTGGCA
Right flanking sequence: Indices 19650 -- 20149
AGCACACGCACTGGACACGCACCACACCCACACCACACCCACCACTCACGACACATAGATCCCAG
AAACACCAATCATCCCCATCCCAACACAACACCACACCATCGCCCGGTTAAGCAGCCCACCGAAA
CTCACAGTCAGCCCAAACAACTGGAGCCCGACAACAGTCAAAAACCCCGCGGTCACCGCAAGCGT
AAGCCCAAAAATCCAGTTCAAGTGGCCCTCGTACCCAGACCGGTTAGAGTTGTACCGCAAGAAAA
GCAGCCCAGCAAGCGCACCCAACGGCTGGGAGAACCCACCCAACACCGCCAGAATCAGCGCAGCC
TTGAGCTTGGCCCACCGCGGGTGCGGGCCAGCATTGAAACTGTAGTAGAGGGGCATGCACATGGT
GAACCCCTCGGTCAAGTTGTGGGCCAAAAGCGACAAAAAGATCAGAAGCCCCAACGTGGGGTCGG
TTTGCAGGGTCACGTAGGTAATGAACCCCTCGGGGAACTTGTGGA
Found at i:19623 original size:35 final size:35
Alignment explanation
Indices: 19575--19644 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
19565 GCAATTGACC
19575 ACCGTAGGAGCCATTGACCACCGTAATAGCCATTG
1 ACCGTAGGAGCCATTGACCACCGTAATAGCCATTG
* *
19610 ACCGTAGTG-GCCATTGGCCACCGTAGTAGCCATTG
1 ACCGTAG-GAGCCATTGACCACCGTAATAGCCATTG
19645 GCCACAGCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 31 0.97
36 1 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (35 bp):
ACCGTAGGAGCCATTGACCACCGTAATAGCCATTG
Left flanking sequence: Indices 19075 -- 19574
TATCATATGACATTTATAGGGGTAGTGTAAACACGTTGCACGCACTGCGTGGGTGCGTTTTGAAT
GACTCCTGCGCCCCATGGGGCCACTGACGGTGGCAACTGCTGCTACGACAGACGGACAACTACTG
GCGGTGTTTATTGAATGCATGCTTGCAAGGTGGGTGATACGTGGGGTAGGGTGCAACCCAGGTGC
AACCCAGGTGCACCTATTGTGCAAGGCGCGGCACGCATGATCACCAATGCAAGAGAAGGTGGTTG
TGGATCGGTCGAAAAGGTACGTAAGTAGTCTTGTTTGTTCTGAAAGCGGTTGGGTGGTGTGGGTG
GTGTGGGAGGTCGGGAGGTGAAGTGAAGGAATGGGTCAATTGTATTGTGAGCCAATGATACCAAA
AGGATTAGCCAATGGTTGTGGTGGATAGTGGAAAAGAACAAGTTAAGGAAGGGAGTTAGTGAATT
GAATGAGTGTGTGAGACGTGCGAGTTAGTGAGGTGGCAATTGACC
Right flanking sequence: Indices 19645 -- 20144
GCCACAGCACACGCACTGGACACGCACCACACCCACACCACACCCACCACTCACGACACATAGAT
CCCAGAAACACCAATCATCCCCATCCCAACACAACACCACACCATCGCCCGGTTAAGCAGCCCAC
CGAAACTCACAGTCAGCCCAAACAACTGGAGCCCGACAACAGTCAAAAACCCCGCGGTCACCGCA
AGCGTAAGCCCAAAAATCCAGTTCAAGTGGCCCTCGTACCCAGACCGGTTAGAGTTGTACCGCAA
GAAAAGCAGCCCAGCAAGCGCACCCAACGGCTGGGAGAACCCACCCAACACCGCCAGAATCAGCG
CAGCCTTGAGCTTGGCCCACCGCGGGTGCGGGCCAGCATTGAAACTGTAGTAGAGGGGCATGCAC
ATGGTGAACCCCTCGGTCAAGTTGTGGGCCAAAAGCGACAAAAAGATCAGAAGCCCCAACGTGGG
GTCGGTTTGCAGGGTCACGTAGGTAATGAACCCCTCGGGGAACTT
Found at i:21158 original size:21 final size:21
Alignment explanation
Indices: 21128--21183 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
21118 GTTATGTGCC
* *
21128 GGAGGTGGGGGAGAGGAGATG
1 GGAGGCGGGGGAGACGAGATG
** *
21149 GGAGGCGGGGGCCACGCGATG
1 GGAGGCGGGGGAGACGAGATG
21170 GGAGGCGGGGGAGA
1 GGAGGCGGGGGAGA
21184 AAGCGAAGGA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.11, G:0.64, T:0.05
Consensus pattern (21 bp):
GGAGGCGGGGGAGACGAGATG
Left flanking sequence: Indices 20628 -- 21127
AACATCGAGCCCATGGGAACAGTGCACCACCAGCTCTGACGTGAGCAAATGGAGCAAGTACGAGA
AGCCAAGGTAGACAACCACCCCGCTGAAGTACGCACCAATCAACGCCAACTCCACCCGGCGCTCA
GGCGGCGGCTTGGCCCCAGACTCCGAGTGTTCGTCGTCCCATCCCGCCCGCAAAAACAGCTGGGC
CTCGGGGAGCAACCGAAACAACAGGGTAAAGAGAAGCCCGCCACTGGAGAACGCCATGGCGTTGG
TCATGAACAGGTAGTTCCGCTCGAGCTTCAACGGCCACCGGCGGGTGATGGCCCGGGGAAGCAAC
CATTGGTAGATATTTTCCACGTAGATCAAGAGGGTGCCCGTGACGCACAAGAGCGAGCTGAGGAT
GGTGAGCGTCCACCCCTGATTGTTTTCAAACAACATTGGATCAGGTGGTGGGGGCAGACAACGTG
GGTTTTATCGACTGCTACCTTGACGGTTAATGTCGGTTATGTGCC
Right flanking sequence: Indices 21184 -- 21683
AAGCGAAGGAGGCGGGGGAGGTGTTGGCATAGGGAAGAGGTGCTCTACGAGCTGGCTACGTGGTG
GGGTGGTTGGCAACGGGGTTCGTTGACACAGCCCGGTGCTGTCAATTCCCGATCAAAAGAGCCGT
GCATGGCGGCGCGCGGATGTCTCCCCGACGTGTTTGTGAAGAGATGTTGCAACGGGGAGTGAAAC
GATGATTTTGTGTAAGGGCTAGCCCCTCGTAGCTGAGCTAGCTCGGTGGTTTCTACGGGTGTCTT
TGGTTTTGGGCGATTTTTCACCGTTTCTGGCGGGATAGTCCGGGGTAGCCCGCCGATCACGTCAC
GGTCGCGTGCTAGTGGTTACCACGACCGTCACGGTTATGCGTCGTGTTGACGGGATTTTCTCATA
ATTTGCTCTGGGCCCCGATTCACCCGTCAGTTGATCTATTGTTCGCTGCGTGGAGGCTTGGCCAG
GGCACGGGAGCCAATAGAGACGAGACAATAGGTGATGTGGGTGAT
Found at i:22754 original size:30 final size:30
Alignment explanation
Indices: 22720--22784 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
22710 ACACCCCCAC
22720 CGCCCAATTGACCG-CCGCGAGCCCGTGCCT
1 CGCCCAATTG-CCGACCGCGAGCCCGTGCCT
** * *
22750 CGCCCCCTTGCGGNCCGCGAGCCCGTGCCT
1 CGCCCAATTGCCGACCGCGAGCCCGTGCCT
22780 CGCCC
1 CGCCC
22785 CCTTGCGGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 2 0.06
30 29 0.94
ACGTcount: A:0.08, C:0.51, G:0.28, T:0.12
Consensus pattern (30 bp):
CGCCCAATTGCCGACCGCGAGCCCGTGCCT
Left flanking sequence: Indices 22220 -- 22719
ACTACCAGAGAGATATAATAACCCTCCATGAAGCCCATCAGGTAATCCCATCAGATAACCCCATA
CAATACCCCCTTACGATAGCCCCATACGACATCCCGTACGATACCCCCTACAATAACCTCTCAGA
ACAACTCATGAGCCCAATTTTTCACCCCTTCCCGTCCGATCAGATCTCGTATATTCCCCGATCGA
GCCAAACCCCGGTCCACCACCCTACGTCCAATTGAAACACCACTAACCGACCAAGCCCCATTCCA
CCTAAGCCCCACAACACCCCCCACTTCCCCACATCCCCCGTCCCACGTCCCACGTCCCTACTACC
CTACTTCAACAGCCCACCCTACACCTTTCGCGTCTTCCCCACCTTTGATCCCCATTACGTCATCA
CAATACCCACCACCACCACCACCCACCCACCGCATTCCCGGCCCCCACACCACCACCAAGCCACC
CAGCCACCCGGCCACCCACCCAAACCACCCGCCCAACACCCCCAC
Right flanking sequence: Indices 22785 -- 23284
CCTTGCGGCTTTTTGCCACCCACCGGTAAGGCTTTTTTTCCCCCCTATATAAACAGCGCGGACAT
GTGGCGGCGAACACTATTGCAACCGCTCCGTTTCTGTCTGTACCGGTCGAACATGTGTCGCTACG
CCAACGCTGCTGCCACCAGCTTGCCCGGGAAGGAGGTGCTCCCCTCCAACGTCAAGCCCCTCCAC
TACCACTTGCGTTTGGAGCCCCTCTTCTCCAACTTCACCTTCAAGGGTCAGGAGACCATCGAGTT
CGACGTCAACGAGGACACCGACTACATCACGTTGAACCTGTTGGAGATCAAGGTCAACTCGGCCG
CGCTCAACGAGGTGCCCGTCAAGGACATCTCGTTTGACGAGGACAAGCAGACCGTCACCTTCCAG
TTGGCGGACGCCCTCAAGAAGGGGTCCAAGGCCAGCCTCGCGCTCGACTTTGTCGGCGAGCTCAA
CGACAAGATGGCCGGTTTCTACCGGTCGTCGTACGTGGAGGACGG
Found at i:22785 original size:30 final size:29
Alignment explanation
Indices: 22733--22793 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
22723 CCAATTGACC
22733 GCCGCGAGCCCGTGCCTCGCCCCCTTGCG
1 GCCGCGAGCCCGTGCCTCGCCCCCTTGCG
22762 GNCCGCGAGCCCGTGCCTCGCCCCCTTGCG
1 G-CCGCGAGCCCGTGCCTCGCCCCCTTGCG
22792 GC
1 GC
22794 TTTTTGCCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 2 0.06
30 29 0.94
ACGTcount: A:0.03, C:0.51, G:0.31, T:0.13
Consensus pattern (29 bp):
GCCGCGAGCCCGTGCCTCGCCCCCTTGCG
Left flanking sequence: Indices 22233 -- 22732
TATAATAACCCTCCATGAAGCCCATCAGGTAATCCCATCAGATAACCCCATACAATACCCCCTTA
CGATAGCCCCATACGACATCCCGTACGATACCCCCTACAATAACCTCTCAGAACAACTCATGAGC
CCAATTTTTCACCCCTTCCCGTCCGATCAGATCTCGTATATTCCCCGATCGAGCCAAACCCCGGT
CCACCACCCTACGTCCAATTGAAACACCACTAACCGACCAAGCCCCATTCCACCTAAGCCCCACA
ACACCCCCCACTTCCCCACATCCCCCGTCCCACGTCCCACGTCCCTACTACCCTACTTCAACAGC
CCACCCTACACCTTTCGCGTCTTCCCCACCTTTGATCCCCATTACGTCATCACAATACCCACCAC
CACCACCACCCACCCACCGCATTCCCGGCCCCCACACCACCACCAAGCCACCCAGCCACCCGGCC
ACCCACCCAAACCACCCGCCCAACACCCCCACCGCCCAATTGACC
Right flanking sequence: Indices 22794 -- 23293
TTTTTGCCACCCACCGGTAAGGCTTTTTTTCCCCCCTATATAAACAGCGCGGACATGTGGCGGCG
AACACTATTGCAACCGCTCCGTTTCTGTCTGTACCGGTCGAACATGTGTCGCTACGCCAACGCTG
CTGCCACCAGCTTGCCCGGGAAGGAGGTGCTCCCCTCCAACGTCAAGCCCCTCCACTACCACTTG
CGTTTGGAGCCCCTCTTCTCCAACTTCACCTTCAAGGGTCAGGAGACCATCGAGTTCGACGTCAA
CGAGGACACCGACTACATCACGTTGAACCTGTTGGAGATCAAGGTCAACTCGGCCGCGCTCAACG
AGGTGCCCGTCAAGGACATCTCGTTTGACGAGGACAAGCAGACCGTCACCTTCCAGTTGGCGGAC
GCCCTCAAGAAGGGGTCCAAGGCCAGCCTCGCGCTCGACTTTGTCGGCGAGCTCAACGACAAGAT
GGCCGGTTTCTACCGGTCGTCGTACGTGGAGGACGGCAAGACCAA
Found at i:25620 original size:15 final size:15
Alignment explanation
Indices: 25600--25628 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25590 GAGGTGTTGC
25600 GATGAGTGGTATTGT
1 GATGAGTGGTATTGT
25615 GATGAGTGGTATTG
1 GATGAGTGGTATTG
25629 CGATTTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (15 bp):
GATGAGTGGTATTGT
Left flanking sequence: Indices 25100 -- 25599
GGGGAGGTTCACCGACGACGCCATCCTCGACAAGGTGTGCGGGCTCTTGCTCCAGACCGACGTGG
TCAAGCAGCAGGACATCTACATTCCCATGCAGGGGTTGCGTGCCCACCGCAAGGGGATTGAGAAG
TTGTGGAGCTGGTTGCAGGAGAACTGGGCCAAGGTGTACGAGTTGTTGCCTCCCGGGTTGCTGAT
GTTGGGGTCGGTGGTGACCATTGCCACGCTGGGGTTCACCAAGGAGGAGCAGAAGAAGGAGGTCG
AGGCGTACTTTGCCAAGATCGACACCAAGGGGTTCGACCAGGGGTTGGCGCAGTCGTTGGACGTG
ATCACCTCGAAGGCCAACTGGTCGTCGCGCGACTACGACGTGATTGCGAAGTGGTTGGGTGAGAA
CGGGTACAAAAAGTAGAGTAGATAGACAAGGATATGGTTTGAGAGGTGTAGGAGATAGAAACAAT
TATATGGTTTAGACGTGTGGGGGAGGCGACGTGTAGAGGTGTTGC
Right flanking sequence: Indices 25629 -- 26128
CGATTTGTAAGAGTATTGCGATGAGTGGTATGGCTATTTGGGAGAGTGTGGCTATATGGGAGAGT
GTAGCGATTTGGGAGAGTATTGCGGTTTGGAAGTATTTCGAATTTGTGAAGAAATAAATGTTAAT
TGATAAATTTGAAAGATTTAACCGAAATACAGCCATAAATTGCCACATATCGTCAGGCAATTGAT
TCCAATAAACCTGATTCGAAATTTCCAAAATCTCAGACTTCGATTTTGACAAATAACGGTGGCTT
CGTTTCAGGTTTCTGTGCACTGGCACCACGTGTAATCATATCAATCACCACCGTTTCAAACGTAC
AATTTACGGGAAAGAATATTGCGACAATGGGTGAAACGCACTCTCCGATCACGAAGTTTCACCTA
CCGGAGGGCATTACTCAGCCAACAACTCAATTCCGCGGCCCTCCAGTCTCCCTCCAGCCTCCCAC
CAGCCTCCACAAGTAGCTTGCTCCCGTATCAGACCACAATTGCCA
Found at i:25675 original size:33 final size:33
Alignment explanation
Indices: 25608--25675 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
25598 GCGATGAGTG
* * *
25608 GTATTGTGATGAGTGGTATTGCGATTTGTAAGA
1 GTATTGCGATGAGTGGTATGGCGATTTGGAAGA
* *
25641 GTATTGCGATGAGTGGTATGGCTATTTGGGAGA
1 GTATTGCGATGAGTGGTATGGCGATTTGGAAGA
25674 GT
1 GT
25676 GTGGCTATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.04, G:0.37, T:0.37
Consensus pattern (33 bp):
GTATTGCGATGAGTGGTATGGCGATTTGGAAGA
Left flanking sequence: Indices 25108 -- 25607
TCACCGACGACGCCATCCTCGACAAGGTGTGCGGGCTCTTGCTCCAGACCGACGTGGTCAAGCAG
CAGGACATCTACATTCCCATGCAGGGGTTGCGTGCCCACCGCAAGGGGATTGAGAAGTTGTGGAG
CTGGTTGCAGGAGAACTGGGCCAAGGTGTACGAGTTGTTGCCTCCCGGGTTGCTGATGTTGGGGT
CGGTGGTGACCATTGCCACGCTGGGGTTCACCAAGGAGGAGCAGAAGAAGGAGGTCGAGGCGTAC
TTTGCCAAGATCGACACCAAGGGGTTCGACCAGGGGTTGGCGCAGTCGTTGGACGTGATCACCTC
GAAGGCCAACTGGTCGTCGCGCGACTACGACGTGATTGCGAAGTGGTTGGGTGAGAACGGGTACA
AAAAGTAGAGTAGATAGACAAGGATATGGTTTGAGAGGTGTAGGAGATAGAAACAATTATATGGT
TTAGACGTGTGGGGGAGGCGACGTGTAGAGGTGTTGCGATGAGTG
Right flanking sequence: Indices 25676 -- 26175
GTGGCTATATGGGAGAGTGTAGCGATTTGGGAGAGTATTGCGGTTTGGAAGTATTTCGAATTTGT
GAAGAAATAAATGTTAATTGATAAATTTGAAAGATTTAACCGAAATACAGCCATAAATTGCCACA
TATCGTCAGGCAATTGATTCCAATAAACCTGATTCGAAATTTCCAAAATCTCAGACTTCGATTTT
GACAAATAACGGTGGCTTCGTTTCAGGTTTCTGTGCACTGGCACCACGTGTAATCATATCAATCA
CCACCGTTTCAAACGTACAATTTACGGGAAAGAATATTGCGACAATGGGTGAAACGCACTCTCCG
ATCACGAAGTTTCACCTACCGGAGGGCATTACTCAGCCAACAACTCAATTCCGCGGCCCTCCAGT
CTCCCTCCAGCCTCCCACCAGCCTCCACAAGTAGCTTGCTCCCGTATCAGACCACAATTGCCAAC
GTGCCCGGTACCGAGGATGGCATTTGTCAGCCATGCGTCCCTTTT
Found at i:25682 original size:18 final size:18
Alignment explanation
Indices: 25659--25711 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
25649 ATGAGTGGTA
25659 TGGCTATTTGGGAGAGTG
1 TGGCTATTTGGGAGAGTG
*
25677 TGGCTATATGGGAGAGTG
1 TGGCTATTTGGGAGAGTG
* *
25695 TAGCGATTTGGGAGAGT
1 TGGCTATTTGGGAGAGT
25712 ATTGCGGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.21, C:0.06, G:0.43, T:0.30
Consensus pattern (18 bp):
TGGCTATTTGGGAGAGTG
Left flanking sequence: Indices 25159 -- 25658
ACGTGGTCAAGCAGCAGGACATCTACATTCCCATGCAGGGGTTGCGTGCCCACCGCAAGGGGATT
GAGAAGTTGTGGAGCTGGTTGCAGGAGAACTGGGCCAAGGTGTACGAGTTGTTGCCTCCCGGGTT
GCTGATGTTGGGGTCGGTGGTGACCATTGCCACGCTGGGGTTCACCAAGGAGGAGCAGAAGAAGG
AGGTCGAGGCGTACTTTGCCAAGATCGACACCAAGGGGTTCGACCAGGGGTTGGCGCAGTCGTTG
GACGTGATCACCTCGAAGGCCAACTGGTCGTCGCGCGACTACGACGTGATTGCGAAGTGGTTGGG
TGAGAACGGGTACAAAAAGTAGAGTAGATAGACAAGGATATGGTTTGAGAGGTGTAGGAGATAGA
AACAATTATATGGTTTAGACGTGTGGGGGAGGCGACGTGTAGAGGTGTTGCGATGAGTGGTATTG
TGATGAGTGGTATTGCGATTTGTAAGAGTATTGCGATGAGTGGTA
Right flanking sequence: Indices 25712 -- 26211
ATTGCGGTTTGGAAGTATTTCGAATTTGTGAAGAAATAAATGTTAATTGATAAATTTGAAAGATT
TAACCGAAATACAGCCATAAATTGCCACATATCGTCAGGCAATTGATTCCAATAAACCTGATTCG
AAATTTCCAAAATCTCAGACTTCGATTTTGACAAATAACGGTGGCTTCGTTTCAGGTTTCTGTGC
ACTGGCACCACGTGTAATCATATCAATCACCACCGTTTCAAACGTACAATTTACGGGAAAGAATA
TTGCGACAATGGGTGAAACGCACTCTCCGATCACGAAGTTTCACCTACCGGAGGGCATTACTCAG
CCAACAACTCAATTCCGCGGCCCTCCAGTCTCCCTCCAGCCTCCCACCAGCCTCCACAAGTAGCT
TGCTCCCGTATCAGACCACAATTGCCAACGTGCCCGGTACCGAGGATGGCATTTGTCAGCCATGC
GTCCCTTTTCGTTCCGGCAACACACAGATCCGAGCGGAAAAGCAC
Found at i:25722 original size:18 final size:18
Alignment explanation
Indices: 25664--25723 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
25654 TGGTATGGCT
* * *
25664 ATTTGGGAGAGTGTGGCT
1 ATTTGGGAGAGTATAGCG
* *
25682 ATATGGGAGAGTGTAGCG
1 ATTTGGGAGAGTATAGCG
*
25700 ATTTGGGAGAGTATTGCG
1 ATTTGGGAGAGTATAGCG
*
25718 GTTTGG
1 ATTTGG
25724 AAGTATTTCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.20, C:0.05, G:0.43, T:0.32
Consensus pattern (18 bp):
ATTTGGGAGAGTATAGCG
Left flanking sequence: Indices 25164 -- 25663
GTCAAGCAGCAGGACATCTACATTCCCATGCAGGGGTTGCGTGCCCACCGCAAGGGGATTGAGAA
GTTGTGGAGCTGGTTGCAGGAGAACTGGGCCAAGGTGTACGAGTTGTTGCCTCCCGGGTTGCTGA
TGTTGGGGTCGGTGGTGACCATTGCCACGCTGGGGTTCACCAAGGAGGAGCAGAAGAAGGAGGTC
GAGGCGTACTTTGCCAAGATCGACACCAAGGGGTTCGACCAGGGGTTGGCGCAGTCGTTGGACGT
GATCACCTCGAAGGCCAACTGGTCGTCGCGCGACTACGACGTGATTGCGAAGTGGTTGGGTGAGA
ACGGGTACAAAAAGTAGAGTAGATAGACAAGGATATGGTTTGAGAGGTGTAGGAGATAGAAACAA
TTATATGGTTTAGACGTGTGGGGGAGGCGACGTGTAGAGGTGTTGCGATGAGTGGTATTGTGATG
AGTGGTATTGCGATTTGTAAGAGTATTGCGATGAGTGGTATGGCT
Right flanking sequence: Indices 25724 -- 26223
AAGTATTTCGAATTTGTGAAGAAATAAATGTTAATTGATAAATTTGAAAGATTTAACCGAAATAC
AGCCATAAATTGCCACATATCGTCAGGCAATTGATTCCAATAAACCTGATTCGAAATTTCCAAAA
TCTCAGACTTCGATTTTGACAAATAACGGTGGCTTCGTTTCAGGTTTCTGTGCACTGGCACCACG
TGTAATCATATCAATCACCACCGTTTCAAACGTACAATTTACGGGAAAGAATATTGCGACAATGG
GTGAAACGCACTCTCCGATCACGAAGTTTCACCTACCGGAGGGCATTACTCAGCCAACAACTCAA
TTCCGCGGCCCTCCAGTCTCCCTCCAGCCTCCCACCAGCCTCCACAAGTAGCTTGCTCCCGTATC
AGACCACAATTGCCAACGTGCCCGGTACCGAGGATGGCATTTGTCAGCCATGCGTCCCTTTTCGT
TCCGGCAACACACAGATCCGAGCGGAAAAGCACCACGACAATGCA
Found at i:26073 original size:11 final size:11
Alignment explanation
Indices: 26057--26091 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26047 AATTCCGCGG
*
26057 CCCTCCAGTCT
1 CCCTCCAGCCT
26068 CCCTCCAGCCT
1 CCCTCCAGCCT
*
26079 CCCACCAGCCT
1 CCCTCCAGCCT
26090 CC
1 CC
26092 ACAAGTAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.11, C:0.63, G:0.09, T:0.17
Consensus pattern (11 bp):
CCCTCCAGCCT
Left flanking sequence: Indices 25557 -- 26056
TATGGTTTAGACGTGTGGGGGAGGCGACGTGTAGAGGTGTTGCGATGAGTGGTATTGTGATGAGT
GGTATTGCGATTTGTAAGAGTATTGCGATGAGTGGTATGGCTATTTGGGAGAGTGTGGCTATATG
GGAGAGTGTAGCGATTTGGGAGAGTATTGCGGTTTGGAAGTATTTCGAATTTGTGAAGAAATAAA
TGTTAATTGATAAATTTGAAAGATTTAACCGAAATACAGCCATAAATTGCCACATATCGTCAGGC
AATTGATTCCAATAAACCTGATTCGAAATTTCCAAAATCTCAGACTTCGATTTTGACAAATAACG
GTGGCTTCGTTTCAGGTTTCTGTGCACTGGCACCACGTGTAATCATATCAATCACCACCGTTTCA
AACGTACAATTTACGGGAAAGAATATTGCGACAATGGGTGAAACGCACTCTCCGATCACGAAGTT
TCACCTACCGGAGGGCATTACTCAGCCAACAACTCAATTCCGCGG
Right flanking sequence: Indices 26092 -- 26591
ACAAGTAGCTTGCTCCCGTATCAGACCACAATTGCCAACGTGCCCGGTACCGAGGATGGCATTTG
TCAGCCATGCGTCCCTTTTCGTTCCGGCAACACACAGATCCGAGCGGAAAAGCACCACGACAATG
CAACCGTCAGTGCACCACCGGACAGAACACTATCTCGTAATCAATCCCTAAGCCTTTGTTCCCCT
TTTCACCCGCCCGGTTCGGGTATTTCCCAACCGGGACATCGAACGGTTATGTGTCTACCGTGCAT
ATCGGTTGCAGCCAGGGTCCTCCAGTTGCAGCCAGGGCCAAGTGGGCCGATAGGCGACGGAGATC
GCCGCGACATTTGTCACCGCCCACCACCACCGGGTGGAGCTGCTTGGGACCCTCATCGAGGCGAG
TGTCGGAGATCTCGGCAGCCGTCGGAGTGCTGACATATCCAGCAGACGCATAACCACCTGCGGTT
GCAGCGATGGCTGAGTAATCCACCACTATATAGCACAAACGGATT
Found at i:28350 original size:10 final size:10
Alignment explanation
Indices: 28320--28408 Score: 76
Period size: 10 Copynumber: 8.9 Consensus size: 10
28310 ACTACAAGCA
28320 AATAACAA-C
1 AATAACAACC
* *
28329 AGTAATAACC
1 AATAACAACC
28339 AATAACAACC
1 AATAACAACC
28349 AATAACAACCC
1 AATAACAA-CC
28360 AA-AACAACC
1 AATAACAACC
28369 AATAAC-ACC
1 AATAACAACC
* *
28378 TAATGACTACC
1 -AATAACAACC
* *
28389 AATAATATCC
1 AATAACAACC
28399 AAATAACAAC
1 -AATAACAAC
28409 AATCTCCTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
9 13 0.21
10 36 0.57
11 14 0.22
ACGTcount: A:0.56, C:0.27, G:0.02, T:0.15
Consensus pattern (10 bp):
AATAACAACC
Left flanking sequence: Indices 27820 -- 28319
GTGCATCTAGAACGTTTCACTGGTAGGTGGTGACAAGCGATTGTCTAGGCGAAACGATCGTCGTT
CCAGGACGATCGCTAAGGGATTTGGGTTTGTGTCACAACAACGATCGCGACCAGATCTACGTGTG
GATTACAAGGCGGGAGGGCGGTGGAAAGTGAGCCCACACCTGCGGATACGAGGATTGCTGTGGCA
GCCAGGGTGTATAAGGCACAAAAAATAGAAGGGTGGGGACGCCAAGTGCACGCGAAGGAGAAAAT
AATGGAAGGGACAATGGGAAAGGGAACAGCTGACCGGAGTGTTTTGAAACTGCTTGTTTGATGTG
GGCTGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGGAGGGGCCAGGCAAAAACAC
GGGTCGAGAACCCGGGGAAAACCCGATCGGTTGACCAAAACGACCTAAACCCGACCAATAGAATA
GCGCAAATCATCTAACTTTGACGCCTAAACCTACGACTACAAGCA
Right flanking sequence: Indices 28409 -- 28908
AATCTCCTAAAACCCACCAGATAACAACCAATAAAACCAAATAACAAGAATCCCCTAAAAACCAC
CAAATAACTACCTATTCTCTAAATGAAACACCTACCACTACCACACACCTAAACCCCTGCTCCCA
CTATCTACTCACACTTTCTACTACCACCTAAACCCACCAAACCACCACCTAAACCACCACCTAAA
CCACCAAACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCA
CGCGTCAATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGA
ATGGAAGCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGC
GTACGGACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAG
ATCTCCCGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCA
Found at i:28411 original size:20 final size:20
Alignment explanation
Indices: 28313--28411 Score: 69
Period size: 20 Copynumber: 5.0 Consensus size: 20
28303 ACCTACGACT
* *
28313 ACAAGCAAATAACAACAGTA
1 ACAACCAAATAACAACAATA
*
28333 ATAACC-AATAACAACCAATA
1 ACAACCAAATAACAA-CAATA
*
28353 ACAACCCAA-AACAACCAATA
1 ACAACCAAATAACAA-CAATA
* * *
28373 AC-ACCTAATGACTACCAATA
1 ACAACCAAATAAC-AACAATA
* *
28393 ATATCCAAATAACAACAAT
1 ACAACCAAATAACAACAAT
28412 CTCCTAAAAC
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
19 13 0.21
20 39 0.63
21 10 0.16
ACGTcount: A:0.57, C:0.26, G:0.03, T:0.14
Consensus pattern (20 bp):
ACAACCAAATAACAACAATA
Left flanking sequence: Indices 27813 -- 28312
GTCAGTAGTGCATCTAGAACGTTTCACTGGTAGGTGGTGACAAGCGATTGTCTAGGCGAAACGAT
CGTCGTTCCAGGACGATCGCTAAGGGATTTGGGTTTGTGTCACAACAACGATCGCGACCAGATCT
ACGTGTGGATTACAAGGCGGGAGGGCGGTGGAAAGTGAGCCCACACCTGCGGATACGAGGATTGC
TGTGGCAGCCAGGGTGTATAAGGCACAAAAAATAGAAGGGTGGGGACGCCAAGTGCACGCGAAGG
AGAAAATAATGGAAGGGACAATGGGAAAGGGAACAGCTGACCGGAGTGTTTTGAAACTGCTTGTT
TGATGTGGGCTGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGGAGGGGCCAGGCA
AAAACACGGGTCGAGAACCCGGGGAAAACCCGATCGGTTGACCAAAACGACCTAAACCCGACCAA
TAGAATAGCGCAAATCATCTAACTTTGACGCCTAAACCTACGACT
Right flanking sequence: Indices 28412 -- 28911
CTCCTAAAACCCACCAGATAACAACCAATAAAACCAAATAACAAGAATCCCCTAAAAACCACCAA
ATAACTACCTATTCTCTAAATGAAACACCTACCACTACCACACACCTAAACCCCTGCTCCCACTA
TCTACTCACACTTTCTACTACCACCTAAACCCACCAAACCACCACCTAAACCACCACCTAAACCA
CCAAACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCACGC
GTCAATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAATG
GAAGCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCGTA
CGGACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAGATC
TCCCGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCG
Found at i:28453 original size:48 final size:49
Alignment explanation
Indices: 28386--28481 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 49
28376 CCTAATGACT
* * * *
28386 ACCAATAATATCCAAATAACAACAATCTCCTAAAACCCACCAGATAACA
1 ACCAATAATAACCAAATAACAACAATCCCCTAAAAACCACCAAATAACA
*
28435 ACCAATAA-AACCAAATAACAAGAATCCCCTAAAAACCACCAAATAAC
1 ACCAATAATAACCAAATAACAACAATCCCCTAAAAACCACCAAATAAC
28482 TACCTATTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 34 0.81
49 8 0.19
ACGTcount: A:0.54, C:0.30, G:0.02, T:0.14
Consensus pattern (49 bp):
ACCAATAATAACCAAATAACAACAATCCCCTAAAAACCACCAAATAACA
Left flanking sequence: Indices 27886 -- 28385
CAGGACGATCGCTAAGGGATTTGGGTTTGTGTCACAACAACGATCGCGACCAGATCTACGTGTGG
ATTACAAGGCGGGAGGGCGGTGGAAAGTGAGCCCACACCTGCGGATACGAGGATTGCTGTGGCAG
CCAGGGTGTATAAGGCACAAAAAATAGAAGGGTGGGGACGCCAAGTGCACGCGAAGGAGAAAATA
ATGGAAGGGACAATGGGAAAGGGAACAGCTGACCGGAGTGTTTTGAAACTGCTTGTTTGATGTGG
GCTGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGGAGGGGCCAGGCAAAAACACG
GGTCGAGAACCCGGGGAAAACCCGATCGGTTGACCAAAACGACCTAAACCCGACCAATAGAATAG
CGCAAATCATCTAACTTTGACGCCTAAACCTACGACTACAAGCAAATAACAACAGTAATAACCAA
TAACAACCAATAACAACCCAAAACAACCAATAACACCTAATGACT
Right flanking sequence: Indices 28482 -- 28981
TACCTATTCTCTAAATGAAACACCTACCACTACCACACACCTAAACCCCTGCTCCCACTATCTAC
TCACACTTTCTACTACCACCTAAACCCACCAAACCACCACCTAAACCACCACCTAAACCACCAAA
CCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCACGCGTCAA
TGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAATGGAAGC
CCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCGTACGGAC
CCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAGATCTCCCG
ACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCGATGGCCATTGTTTTGCTGTGGGCAT
TTTGTAAACAAACACCCTGCAGATGTCCCGCGTGCATCGCCAGCG
Found at i:28587 original size:21 final size:24
Alignment explanation
Indices: 28561--28609 Score: 77
Period size: 21 Copynumber: 2.2 Consensus size: 24
28551 ACTTTCTACT
28561 ACCACCTAAA-C-CCACC-AAACC
1 ACCACCTAAACCACCACCTAAACC
28582 ACCACCTAAACCACCACCTAAACC
1 ACCACCTAAACCACCACCTAAACC
28606 ACCA
1 ACCA
28610 AACCACCCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.40
22 1 0.04
23 5 0.20
24 9 0.36
ACGTcount: A:0.43, C:0.51, G:0.00, T:0.06
Consensus pattern (24 bp):
ACCACCTAAACCACCACCTAAACC
Left flanking sequence: Indices 28061 -- 28560
TGCACGCGAAGGAGAAAATAATGGAAGGGACAATGGGAAAGGGAACAGCTGACCGGAGTGTTTTG
AAACTGCTTGTTTGATGTGGGCTGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGG
AGGGGCCAGGCAAAAACACGGGTCGAGAACCCGGGGAAAACCCGATCGGTTGACCAAAACGACCT
AAACCCGACCAATAGAATAGCGCAAATCATCTAACTTTGACGCCTAAACCTACGACTACAAGCAA
ATAACAACAGTAATAACCAATAACAACCAATAACAACCCAAAACAACCAATAACACCTAATGACT
ACCAATAATATCCAAATAACAACAATCTCCTAAAACCCACCAGATAACAACCAATAAAACCAAAT
AACAAGAATCCCCTAAAAACCACCAAATAACTACCTATTCTCTAAATGAAACACCTACCACTACC
ACACACCTAAACCCCTGCTCCCACTATCTACTCACACTTTCTACT
Right flanking sequence: Indices 28610 -- 29109
AACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCACGCGTC
AATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAATGGAA
GCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCGTACGG
ACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAGATCTCC
CGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCGATGGCCATTGTTTTGCTGTGGGC
ATTTTGTAAACAAACACCCTGCAGATGTCCCGCGTGCATCGCCAGCGACATGGAGTTCATGGGGT
ACGCGTCCGCAGGGCCAGGCCCCAGCCCACCACCGCCGTAGACCCATCCCCCTGTAGCCCGTTGA
CACCCGCCCGCGCCGTTGCACAATCCTGTCACCATCCTTCGCAGC
Found at i:28594 original size:12 final size:12
Alignment explanation
Indices: 28561--28609 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
28551 ACTTTCTACT
28561 ACCACCTAAA-C
1 ACCACCTAAACC
28572 -CCACC-AAACC
1 ACCACCTAAACC
28582 ACCACCTAAACC
1 ACCACCTAAACC
28594 ACCACCTAAACC
1 ACCACCTAAACC
28606 ACCA
1 ACCA
28610 AACCACCCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.09
10 6 0.17
11 5 0.14
12 21 0.60
ACGTcount: A:0.43, C:0.51, G:0.00, T:0.06
Consensus pattern (12 bp):
ACCACCTAAACC
Left flanking sequence: Indices 28061 -- 28560
TGCACGCGAAGGAGAAAATAATGGAAGGGACAATGGGAAAGGGAACAGCTGACCGGAGTGTTTTG
AAACTGCTTGTTTGATGTGGGCTGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGG
AGGGGCCAGGCAAAAACACGGGTCGAGAACCCGGGGAAAACCCGATCGGTTGACCAAAACGACCT
AAACCCGACCAATAGAATAGCGCAAATCATCTAACTTTGACGCCTAAACCTACGACTACAAGCAA
ATAACAACAGTAATAACCAATAACAACCAATAACAACCCAAAACAACCAATAACACCTAATGACT
ACCAATAATATCCAAATAACAACAATCTCCTAAAACCCACCAGATAACAACCAATAAAACCAAAT
AACAAGAATCCCCTAAAAACCACCAAATAACTACCTATTCTCTAAATGAAACACCTACCACTACC
ACACACCTAAACCCCTGCTCCCACTATCTACTCACACTTTCTACT
Right flanking sequence: Indices 28610 -- 29109
AACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCACGCGTC
AATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAATGGAA
GCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCGTACGG
ACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAGATCTCC
CGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCGATGGCCATTGTTTTGCTGTGGGC
ATTTTGTAAACAAACACCCTGCAGATGTCCCGCGTGCATCGCCAGCGACATGGAGTTCATGGGGT
ACGCGTCCGCAGGGCCAGGCCCCAGCCCACCACCGCCGTAGACCCATCCCCCTGTAGCCCGTTGA
CACCCGCCCGCGCCGTTGCACAATCCTGTCACCATCCTTCGCAGC
Found at i:30333 original size:12 final size:12
Alignment explanation
Indices: 30313--30342 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
30303 ATCGTCACGG
*
30313 TGCCACGGGACT
1 TGCCGCGGGACT
30325 TGCCGCGGGACT
1 TGCCGCGGGACT
30337 TGCCGC
1 TGCCGC
30343 TGGCGACCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.37, G:0.37, T:0.17
Consensus pattern (12 bp):
TGCCGCGGGACT
Left flanking sequence: Indices 29813 -- 30312
CAGCACCGACTTGGACGCGTTGGAGCGGTCCAAGCTGATTGCGCTGGTGTTCACCACCTTCTCCA
CGGGCACGGGCAGCGCCACCCCCGTGCGGCTCGCGGCGGTGGCGGAAAGCGACGCCGAGGACGCT
CCGCAGGCGGGGCGCGACGGGTTGTTGCCCGCGTGCGAGATCGAGCCCGAGAAGCTACCGTTGGC
GGTGGACACGCGGGCCAAGACGGCGCTGGGGGTGGTGTTCGGGTCCGAGCTCGTTTCCCCGGTGG
AAAAACTGGTTTCTCCGGTGGAAAACGGGCACTTTGCGAGCCCCCCGGAAAACAGCGAAAACGCC
GGTGAAAAACTTGAAAAACCTGAAAATTCGGGCTCTCCGGGCTCTCCGGTGGACTCGAGCCCGGG
CGACACCCACGACCCCGCGAGAGCACCGCTGACCGACCCCACCGACATCAGCATCACCAACCCGC
ACATCGAGGCGTACCAGCCCGCCCCGAAGCCGCAGATCGTCACGG
Right flanking sequence: Indices 30343 -- 30842
TGGCGACCCCGCTGACGGTGGAAGACGTGTACCGCGACGCGTACATGCTGTTGATGGACCACCAC
CAGGCGGTGGTGGACCGCCAGCGGCGCGACATCGCCCAGTTGCAGCGCCAGTTGCAGCACGAACG
CGACCGCAACCGCGACTTGCTCAACATGGTGACGCTGAAGAAGCTGGCGGAGCTGCCGGCGCCGC
TCAAGCCGTTCCGCAACAAGTTCATTGTGCCGATGAAGATCGTCAACCTGCCGCAGGCACACGAC
GCGGTGGAGCTCGATCCCGTGGACGCCGACGTGCCCACGCTGACGCCGATGACGCTGTTTGCCCG
CGACGACGACAAGCGGCTGACGGCGTTCTATCTGTGCAAGCTGGTGCTCGACGACCTGGGGGTGT
TTGAGGAGATTCCGTTTGAGCCGTTTGTCGGCCACCGGCTCGACGCGCTGGTGGAGGAGATCCAC
AAAGGCTACGAGGTGGCGGAGAAGGGGGTCCACAAAGGCTACCTG
Found at i:31536 original size:15 final size:15
Alignment explanation
Indices: 31498--31609 Score: 56
Period size: 15 Copynumber: 7.5 Consensus size: 15
31488 ATTGGGTAGA
*
31498 GATCGAGGTAGAGACT
1 GATC-AGGTAGAGATT
** * *
31514 GAGAAGGTTGAGGTT
1 GATCAGGTAGAGATT
31529 GATCAGGTAGAGATT
1 GATCAGGTAGAGATT
**
31544 GATTGGGTAGAAGATT
1 GATCAGGTAG-AGATT
31560 GATC-GAG-AGAGATT
1 GATCAG-GTAGAGATT
*
31574 G-TCTAGGGAGTAGA--
1 GATC-AGGTAG-AGATT
*
31588 GAT-TGGTAGAGATT
1 GATCAGGTAGAGATT
31602 GATCAGGT
1 GATCAGGT
31610 TGGCAAGATT
Statistics
Matches: 71, Mismatches: 15, Indels: 21
0.66 0.14 0.20
Matches are distributed among these distances:
12 3 0.04
13 6 0.08
14 11 0.15
15 37 0.52
16 14 0.20
ACGTcount: A:0.30, C:0.05, G:0.38, T:0.26
Consensus pattern (15 bp):
GATCAGGTAGAGATT
Left flanking sequence: Indices 30998 -- 31497
GGCCCACTACCCGGACGAGATCGGAGCCCACGAGGTCGAGGCCCACGACTACCTGGACGAGGCGC
TGGCGCCCGGAAACCTGATGGCGCTGGCCCCCCACCTGCCGCAGGACGTCACCACCCCCACCATC
GTGCTGGTGCCCGAGTTTGCCAGCAACAACCCGTTCAAGGACATGCCGCTCGACGAGCTGCTGCC
CCAGGAGGCGCTGCCCGCGGCGCTGCTGGTGTATCTGCCGGTGAAGGAGGTGAGACGCTCGCGGT
TCCTCGACATCATGGAGGTGGCGCGCGCGTACGACGCCGAGGTCAACTCGGTGGACGACGACGTG
TTTGACTTTGAGCCCCCCGTGGAGCCGGTGTCGAGCATGACCACCCCGGGCGTGGCCCACCACGA
CAAGTTCTAATGCATTGCACGCGAGTGCTGGTTAATATAGAAGACACAGTCTAATTAATATCGAC
AATGAGAGAGAGAGATGGGTGGGGATGGAGTAGGGATTGGGTAGA
Right flanking sequence: Indices 31610 -- 32109
TGGCAAGATTGATCGAGAGCGATTGTAGAAATATCGGGTAGAGAGATTGATCGCGTAGAGAGATT
GTCTTGAAGAGATTGACCGAGATTCATCTTGAGACTAGATTGACGCTGTGCTGACGGGTATTGTT
CGTGAGCAAATAAGGTTGGTGGTCGTAAACGGAGATCACATGGGTGGGACAAGTGTCTGCGTCTG
TGTGGGGCTGCCTCGAAGGTCGCGCGCGCGGTGGGTTGATGGGGTTGGTGTGAGTTGGTGTGTGG
GTGAGTATACGTGGTGTTTTCAGAGCTTTTGGCTACGTAGCATTAAGCAGTGGAACAGCGGTTGG
TGACCGCATGAGGCCCAAATGGGAAGCGTGATCTGGACGCGGACAGCTGTACGAATCATGAGATG
CTGCGATAAGGGTTCAGACAGTCAGCGCGAGGAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCA
TTTAGGGTGGAGCAGGTCTAGGCCCGATTGGGAAATAATGCCCAA
Found at i:31667 original size:17 final size:17
Alignment explanation
Indices: 31642--31675 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
31632 TTGTAGAAAT
*
31642 ATCGGGTAGAGAGATTG
1 ATCGCGTAGAGAGATTG
31659 ATCGCGTAGAGAGATTG
1 ATCGCGTAGAGAGATTG
31676 TCTTGAAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.38, T:0.24
Consensus pattern (17 bp):
ATCGCGTAGAGAGATTG
Left flanking sequence: Indices 31142 -- 31641
GTTTGCCAGCAACAACCCGTTCAAGGACATGCCGCTCGACGAGCTGCTGCCCCAGGAGGCGCTGC
CCGCGGCGCTGCTGGTGTATCTGCCGGTGAAGGAGGTGAGACGCTCGCGGTTCCTCGACATCATG
GAGGTGGCGCGCGCGTACGACGCCGAGGTCAACTCGGTGGACGACGACGTGTTTGACTTTGAGCC
CCCCGTGGAGCCGGTGTCGAGCATGACCACCCCGGGCGTGGCCCACCACGACAAGTTCTAATGCA
TTGCACGCGAGTGCTGGTTAATATAGAAGACACAGTCTAATTAATATCGACAATGAGAGAGAGAG
ATGGGTGGGGATGGAGTAGGGATTGGGTAGAGATCGAGGTAGAGACTGAGAAGGTTGAGGTTGAT
CAGGTAGAGATTGATTGGGTAGAAGATTGATCGAGAGAGATTGTCTAGGGAGTAGAGATTGGTAG
AGATTGATCAGGTTGGCAAGATTGATCGAGAGCGATTGTAGAAAT
Right flanking sequence: Indices 31676 -- 32175
TCTTGAAGAGATTGACCGAGATTCATCTTGAGACTAGATTGACGCTGTGCTGACGGGTATTGTTC
GTGAGCAAATAAGGTTGGTGGTCGTAAACGGAGATCACATGGGTGGGACAAGTGTCTGCGTCTGT
GTGGGGCTGCCTCGAAGGTCGCGCGCGCGGTGGGTTGATGGGGTTGGTGTGAGTTGGTGTGTGGG
TGAGTATACGTGGTGTTTTCAGAGCTTTTGGCTACGTAGCATTAAGCAGTGGAACAGCGGTTGGT
GACCGCATGAGGCCCAAATGGGAAGCGTGATCTGGACGCGGACAGCTGTACGAATCATGAGATGC
TGCGATAAGGGTTCAGACAGTCAGCGCGAGGAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCAT
TTAGGGTGGAGCAGGTCTAGGCCCGATTGGGAAATAATGCCCAATATCGAACCACAAGGGAGAGG
TGGTGAAAAGGGGTGGAATAAAAGTCTCAAGAGCAAAAAAGGGGT
Found at i:32386 original size:21 final size:21
Alignment explanation
Indices: 32336--32417 Score: 92
Period size: 21 Copynumber: 3.8 Consensus size: 21
32326 CAAAAATTGT
*
32336 CTCCAATATGGTTGCAAAAATGC
1 CTCCAAAATGGTTGC-AAAA-GC
*
32359 GTCCAAAATGGTTGCAAAAGC
1 CTCCAAAATGGTTGCAAAAGC
* *
32380 CTCCAAAGTGGTTGCAAATGC
1 CTCCAAAATGGTTGCAAAAGC
* *
32401 CCCCAAAATGGCTGCAA
1 CTCCAAAATGGTTGCAA
32418 TGATTGCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
21 34 0.67
22 4 0.08
23 13 0.25
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCAAAATGGTTGCAAAAGC
Left flanking sequence: Indices 31836 -- 32335
TGGGTTGATGGGGTTGGTGTGAGTTGGTGTGTGGGTGAGTATACGTGGTGTTTTCAGAGCTTTTG
GCTACGTAGCATTAAGCAGTGGAACAGCGGTTGGTGACCGCATGAGGCCCAAATGGGAAGCGTGA
TCTGGACGCGGACAGCTGTACGAATCATGAGATGCTGCGATAAGGGTTCAGACAGTCAGCGCGAG
GAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCATTTAGGGTGGAGCAGGTCTAGGCCCGATTGG
GAAATAATGCCCAATATCGAACCACAAGGGAGAGGTGGTGAAAAGGGGTGGAATAAAAGTCTCAA
GAGCAAAAAAGGGGTTTTCCGTGTATTTCCAGTCTCTCGAAAAACCACAACCACTTCTGTAACCA
CCCCACGCCCCTGGAAGCGCTCTACGTTGGGACCATGTTTCTTTGAGGTTTTTGTCCTGTATATA
ATTTGGCTGCAAAAATGGTTGCAAAATGGAGACTACAAAAATTGT
Right flanking sequence: Indices 32418 -- 32917
TGATTGCAATGGTTACAGGTTATGCACCTTAATCCATTCCTACGCCATCCAACCCCTCTCCTCTC
ATCGTCTACTTTATTACTGTACATCACGCGGGCGAAAACTCCTTGATCTCGTTCTCGTCCGCCAC
AAGACCCATCACGTTCAAGAACATGTTCATGTTGTTCAACAAGTTCAGCTTGCGGTACGCCTGCT
GCGGGTCCAGCGCGTCCAACGCCTTGGCCCGCTTCATGGTGCCAAAGATCTCGTCGCGCACCTCG
TCGACAAGAATCCGCTGGTGGTTCAACTTGCCGCCGCAGCACAACGTGGCCAAAAACTGCCAGAT
GTAGTTCTCCAGGGTCAGCCCGTCGTCCACGTCCTCGGGATGCGGCGGGAAGATCTGGGCAATCT
TCAGCTCAAGCAGCGTGAACAACTCGTCGTAGCACAGCTGCCACAGCAGGAGCTCCGTGGCCAGC
AACCGCAGCTCGCCGATGATCAACATCGCCCGCAGCACAAGCGTG
Found at i:34197 original size:21 final size:21
Alignment explanation
Indices: 34172--34218 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
34162 GGGAAGGGGC
34172 TGGCCGTGGGGCGGGACGGGT
1 TGGCCGTGGGGCGGGACGGGT
*
34193 TGGCCGTGGGGCTGGACGGGT
1 TGGCCGTGGGGCGGGACGGGT
34214 TGGCC
1 TGGCC
34219 CTGGACGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.21, G:0.57, T:0.17
Consensus pattern (21 bp):
TGGCCGTGGGGCGGGACGGGT
Left flanking sequence: Indices 33672 -- 34171
ACTTGGGCCGCTCCTTGGCCACGGTGACCGCCTTCTGGACCTGCTGCTGCATCCGCTGGAGCGCC
ACGTCCGCGCGCTTGTGGCGGCCGCCAAGACGGTGGCCCAGCTGCTCGAGGTACGCCTGGGCAAT
CAGGTTGTGCTCGTTCAGCTGGGTGGCGCCGTACGCGTTCTGCTTCGGGTGGATCACCTTGAACA
CCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCCTCGGTGACGATCTGCGACAACTGGAACCGGGTG
ACAAAGTCCTTGTCCTTGGGGTTCATGATGCCCAGATACTTCATGATGCGTGCCACCTTTTCCTG
GCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGAAGTTGACCCGGTCGTGCGACG
GGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCGGGCTTCAGACCAAGCACGGGG
AACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGGC
Right flanking sequence: Indices 34219 -- 34718
CTGGACGGGTTGGCCTTGGATAGGCTGGCCCTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGA
TCTGCTGGCCCTGGATCTGCTGGCCCTGAATGGGTTGACCCTGGATGGGTTGGCCGGGCTGGCCC
TGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCTTGAATGGGCTGGCCGGGTTG
ACCAGGCTGACCAGGTTGACCATGCGGCTGACCAGGTTGTCCAGGTTGACCAGGCTGACCAGGTT
GACCAGGCTGTCCGGGCTGACCAGGCTGACCCTGACCGGGCTGACCAGGTCCCATAAACTGGCCC
ATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCACCAGGCCCACCAGGAGC
ACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCGGAGGCA
CCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTT
Found at i:34224 original size:15 final size:15
Alignment explanation
Indices: 34204--34338 Score: 87
Period size: 15 Copynumber: 9.0 Consensus size: 15
34194 GGCCGTGGGG
34204 CTGGACGGGTTGGCC
1 CTGGACGGGTTGGCC
34219 CTGGACGGGTTGGCC
1 CTGGACGGGTTGGCC
* ** *
34234 TTGGATAGGCTGGCC
1 CTGGACGGGTTGGCC
*
34249 CTGGACGGGTTGACC
1 CTGGACGGGTTGGCC
* *
34264 CTGG-CTAGGCTGGCC
1 CTGGAC-GGGTTGGCC
* *
34279 CTGGATC-TGCTGGCC
1 CTGGA-CGGGTTGGCC
* *
34294 CTGGATC-TGCTGGCC
1 CTGGA-CGGGTTGGCC
* * *
34309 CTGAATGGGTTGACC
1 CTGGACGGGTTGGCC
*
34324 CTGGATGGGTTGGCC
1 CTGGACGGGTTGGCC
34339 GGGCTGGCCC
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
14 1 0.01
15 94 0.98
17 1 0.01
ACGTcount: A:0.10, C:0.27, G:0.40, T:0.24
Consensus pattern (15 bp):
CTGGACGGGTTGGCC
Left flanking sequence: Indices 33704 -- 34203
TTCTGGACCTGCTGCTGCATCCGCTGGAGCGCCACGTCCGCGCGCTTGTGGCGGCCGCCAAGACG
GTGGCCCAGCTGCTCGAGGTACGCCTGGGCAATCAGGTTGTGCTCGTTCAGCTGGGTGGCGCCGT
ACGCGTTCTGCTTCGGGTGGATCACCTTGAACACCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCC
TCGGTGACGATCTGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCC
CAGATACTTCATGATGCGTGCCACCTTTTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGG
TCAACTCGTCGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGC
GAGCCCTTGGCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTG
CCCGGGAAGGGGCTGGCCGTGGGGCGGGACGGGTTGGCCGTGGGG
Right flanking sequence: Indices 34339 -- 34838
GGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCTTGAATGGGCT
GGCCGGGTTGACCAGGCTGACCAGGTTGACCATGCGGCTGACCAGGTTGTCCAGGTTGACCAGGC
TGACCAGGTTGACCAGGCTGTCCGGGCTGACCAGGCTGACCCTGACCGGGCTGACCAGGTCCCAT
AAACTGGCCCATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCACCAGGCC
CACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCC
TGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGG
CTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCA
TGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGA
Found at i:34250 original size:30 final size:30
Alignment explanation
Indices: 34214--34338 Score: 126
Period size: 30 Copynumber: 4.2 Consensus size: 30
34204 CTGGACGGGT
* *
34214 TGGCCCTGGACGGGTTGGCCTTGGATAGGC
1 TGGCCCTGGACGGGTTGACCCTGGATAGGC
*
34244 TGGCCCTGGACGGGTTGACCCTGGCTAGGC
1 TGGCCCTGGACGGGTTGACCCTGGATAGGC
* * * **
34274 TGGCCCTGGATC-TGCTGGCCCTGGATCTGC
1 TGGCCCTGGA-CGGGTTGACCCTGGATAGGC
* * * *
34304 TGGCCCTGAATGGGTTGACCCTGGATGGGT
1 TGGCCCTGGACGGGTTGACCCTGGATAGGC
34334 TGGCC
1 TGGCC
34339 GGGCTGGCCC
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
30 75 0.99
31 1 0.01
ACGTcount: A:0.10, C:0.27, G:0.39, T:0.24
Consensus pattern (30 bp):
TGGCCCTGGACGGGTTGACCCTGGATAGGC
Left flanking sequence: Indices 33714 -- 34213
GCTGCTGCATCCGCTGGAGCGCCACGTCCGCGCGCTTGTGGCGGCCGCCAAGACGGTGGCCCAGC
TGCTCGAGGTACGCCTGGGCAATCAGGTTGTGCTCGTTCAGCTGGGTGGCGCCGTACGCGTTCTG
CTTCGGGTGGATCACCTTGAACACCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCCTCGGTGACGA
TCTGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCCCAGATACTTC
ATGATGCGTGCCACCTTTTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTC
GAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGG
CGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGG
GGCTGGCCGTGGGGCGGGACGGGTTGGCCGTGGGGCTGGACGGGT
Right flanking sequence: Indices 34339 -- 34838
GGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCTTGAATGGGCT
GGCCGGGTTGACCAGGCTGACCAGGTTGACCATGCGGCTGACCAGGTTGTCCAGGTTGACCAGGC
TGACCAGGTTGACCAGGCTGTCCGGGCTGACCAGGCTGACCCTGACCGGGCTGACCAGGTCCCAT
AAACTGGCCCATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCACCAGGCC
CACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCC
TGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGG
CTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCA
TGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGA
Found at i:34255 original size:45 final size:45
Alignment explanation
Indices: 34204--34298 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
34194 GGCCGTGGGG
* * * *
34204 CTGGACGGGTTGGCCCTGGAC-GGGTTGGCCTTGGATAGGCTGGCC
1 CTGGACGGGTTGACCCTGG-CTAGGCTGGCCCTGGATAGGCTGGCC
**
34249 CTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGCTGGCC
1 CTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGATAGGCTGGCC
34294 CTGGA
1 CTGGA
34299 TCTGCTGGCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.09, C:0.27, G:0.41, T:0.22
Consensus pattern (45 bp):
CTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGATAGGCTGGCC
Left flanking sequence: Indices 33704 -- 34203
TTCTGGACCTGCTGCTGCATCCGCTGGAGCGCCACGTCCGCGCGCTTGTGGCGGCCGCCAAGACG
GTGGCCCAGCTGCTCGAGGTACGCCTGGGCAATCAGGTTGTGCTCGTTCAGCTGGGTGGCGCCGT
ACGCGTTCTGCTTCGGGTGGATCACCTTGAACACCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCC
TCGGTGACGATCTGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCC
CAGATACTTCATGATGCGTGCCACCTTTTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGG
TCAACTCGTCGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGC
GAGCCCTTGGCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTG
CCCGGGAAGGGGCTGGCCGTGGGGCGGGACGGGTTGGCCGTGGGG
Right flanking sequence: Indices 34299 -- 34798
TCTGCTGGCCCTGAATGGGTTGACCCTGGATGGGTTGGCCGGGCTGGCCCTGAGGCTGACCAGGC
TGGCCTTGAATGGGCTGACCGGGCTGGCCTTGAATGGGCTGGCCGGGTTGACCAGGCTGACCAGG
TTGACCATGCGGCTGACCAGGTTGTCCAGGTTGACCAGGCTGACCAGGTTGACCAGGCTGTCCGG
GCTGACCAGGCTGACCCTGACCGGGCTGACCAGGTCCCATAAACTGGCCCATGGGCATGAACGGG
GGCATCCCAGGCCCACCGGGACCACCGGGACCACCAGGCCCACCAGGAGCACCCATCCACTGCTG
CGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCGGAGGCACCATGTACCCCATGG
GCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGG
TCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATC
Found at i:34409 original size:24 final size:24
Alignment explanation
Indices: 34328--34410 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
34318 TTGACCCTGG
* * *
34328 ATGGGTTGGCCGGGCTGGCCCTG-
1 ATGGGCTGACCGGGCTGGCCTTGA
*
34351 A--GGCTGACCAGGCTGGCCTTGA
1 ATGGGCTGACCGGGCTGGCCTTGA
34373 ATGGGCTGACCGGGCTGGCCTTGA
1 ATGGGCTGACCGGGCTGGCCTTGA
*
34397 ATGGGCTGGCCGGG
1 ATGGGCTGACCGGG
34411 TTGACCAGGC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
21 16 0.31
22 1 0.02
23 1 0.02
24 33 0.65
ACGTcount: A:0.11, C:0.25, G:0.45, T:0.19
Consensus pattern (24 bp):
ATGGGCTGACCGGGCTGGCCTTGA
Left flanking sequence: Indices 33828 -- 34327
CGCCGTACGCGTTCTGCTTCGGGTGGATCACCTTGAACACCTGCGCGTAGAAGTCCTCGTTGTAG
GGGTCCTCGGTGACGATCTGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCAT
GATGCCCAGATACTTCATGATGCGTGCCACCTTTTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCT
CGGGGGTCAACTCGTCGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGC
GGCAGCGAGCCCTTGGCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTG
GAACTGCCCGGGAAGGGGCTGGCCGTGGGGCGGGACGGGTTGGCCGTGGGGCTGGACGGGTTGGC
CCTGGACGGGTTGGCCTTGGATAGGCTGGCCCTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGG
ATCTGCTGGCCCTGGATCTGCTGGCCCTGAATGGGTTGACCCTGG
Right flanking sequence: Indices 34411 -- 34910
TTGACCAGGCTGACCAGGTTGACCATGCGGCTGACCAGGTTGTCCAGGTTGACCAGGCTGACCAG
GTTGACCAGGCTGTCCGGGCTGACCAGGCTGACCCTGACCGGGCTGACCAGGTCCCATAAACTGG
CCCATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCACCAGGCCCACCAGG
AGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCGGAG
GCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGC
TGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATCTT
GCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGAT
CCTCCATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCG
Found at i:34426 original size:9 final size:9
Alignment explanation
Indices: 34412--34527 Score: 112
Period size: 9 Copynumber: 12.9 Consensus size: 9
34402 CTGGCCGGGT
34412 TGACCAGGC
1 TGACCAGGC
*
34421 TGACCAGGT
1 TGACCAGGC
34430 TGACCATGCGGC
1 TGACCA---GGC
*
34442 TGACCAGGT
1 TGACCAGGC
* *
34451 TGTCCAGGT
1 TGACCAGGC
34460 TGACCAGGC
1 TGACCAGGC
*
34469 TGACCAGGT
1 TGACCAGGC
34478 TGACCAGGC
1 TGACCAGGC
* *
34487 TGTCCGGGC
1 TGACCAGGC
34496 TGACCAGGC
1 TGACCAGGC
34505 TGACC---C
1 TGACCAGGC
*
34511 TGACCGGGC
1 TGACCAGGC
34520 TGACCAGG
1 TGACCAGG
34528 TCCCATAAAC
Statistics
Matches: 88, Mismatches: 13, Indels: 12
0.78 0.12 0.11
Matches are distributed among these distances:
6 6 0.07
9 74 0.84
12 8 0.09
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.17
Consensus pattern (9 bp):
TGACCAGGC
Left flanking sequence: Indices 33912 -- 34411
GCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCCCAGATACTTCATG
ATGCGTGCCACCTTTTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGAA
GTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCGG
GCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGGC
TGGCCGTGGGGCGGGACGGGTTGGCCGTGGGGCTGGACGGGTTGGCCCTGGACGGGTTGGCCTTG
GATAGGCTGGCCCTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGCTGGCCCTGGATCT
GCTGGCCCTGAATGGGTTGACCCTGGATGGGTTGGCCGGGCTGGCCCTGAGGCTGACCAGGCTGG
CCTTGAATGGGCTGACCGGGCTGGCCTTGAATGGGCTGGCCGGGT
Right flanking sequence: Indices 34528 -- 35027
TCCCATAAACTGGCCCATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCAC
CAGGCCCACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATA
AACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTG
GCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCA
ACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGAC
GAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGA
CACCTGCTGGGGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGA
GCTGGTCGGTGCCCACGCCAAAGGTTTCGTCATTGAACTCGTCGT
Found at i:34443 original size:39 final size:39
Alignment explanation
Indices: 34400--34528 Score: 120
Period size: 36 Copynumber: 3.3 Consensus size: 39
34390 GCCTTGAATG
* * *
34400 GGCTGGCCGGGTTGACCAGGCTGACCAGGTTGACCATGC
1 GGCTGACCAGGTTGACCAGGCTGACCAGGCTGACCATGC
* *
34439 GGCTGACCAGGTTGTCCAGGTTGACCAGGCTGACCA---
1 GGCTGACCAGGTTGACCAGGCTGACCAGGCTGACCATGC
* * * * *
34475 GGTTGACCAGGCTGTCCGGGCTGACCAGGCTGACCCTGACC
1 GGCTGACCAGGTTGACCAGGCTGACCAGGCTGACCATG--C
34516 GGGCTGACCAGGT
1 -GGCTGACCAGGT
34529 CCCATAAACT
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
36 31 0.43
39 31 0.43
42 10 0.14
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.18
Consensus pattern (39 bp):
GGCTGACCAGGTTGACCAGGCTGACCAGGCTGACCATGC
Left flanking sequence: Indices 33900 -- 34399
CGGTGACGATCTGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCCC
AGATACTTCATGATGCGTGCCACCTTTTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGT
CAACTCGTCGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCG
AGCCCTTGGCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGC
CCGGGAAGGGGCTGGCCGTGGGGCGGGACGGGTTGGCCGTGGGGCTGGACGGGTTGGCCCTGGAC
GGGTTGGCCTTGGATAGGCTGGCCCTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGCT
GGCCCTGGATCTGCTGGCCCTGAATGGGTTGACCCTGGATGGGTTGGCCGGGCTGGCCCTGAGGC
TGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCTTGAATG
Right flanking sequence: Indices 34529 -- 35028
CCCATAAACTGGCCCATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCACC
AGGCCCACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAA
ACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGG
CCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAA
CAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACG
AGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGAC
ACCTGCTGGGGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAG
CTGGTCGGTGCCCACGCCAAAGGTTTCGTCATTGAACTCGTCGTC
Found at i:34515 original size:15 final size:15
Alignment explanation
Indices: 34495--34524 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34485 GCTGTCCGGG
34495 CTGACCAGGCTGACC
1 CTGACCAGGCTGACC
*
34510 CTGACCGGGCTGACC
1 CTGACCAGGCTGACC
34525 AGGTCCCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.40, G:0.30, T:0.13
Consensus pattern (15 bp):
CTGACCAGGCTGACC
Left flanking sequence: Indices 33995 -- 34494
TGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGAAGTTGACCCGGTCGTGCGA
CGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCGGGCTTCAGACCAAGCACGG
GGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGGCTGGCCGTGGGGCGGGACG
GGTTGGCCGTGGGGCTGGACGGGTTGGCCCTGGACGGGTTGGCCTTGGATAGGCTGGCCCTGGAC
GGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGCTGGCCCTGGATCTGCTGGCCCTGAATGGGTT
GACCCTGGATGGGTTGGCCGGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCG
GGCTGGCCTTGAATGGGCTGGCCGGGTTGACCAGGCTGACCAGGTTGACCATGCGGCTGACCAGG
TTGTCCAGGTTGACCAGGCTGACCAGGTTGACCAGGCTGTCCGGG
Right flanking sequence: Indices 34525 -- 35024
AGGTCCCATAAACTGGCCCATGGGCATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGAC
CACCAGGCCCACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGC
ATAAACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTG
CTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCT
CCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTG
GACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATA
CGACACCTGCTGGGGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGT
CGAGCTGGTCGGTGCCCACGCCAAAGGTTTCGTCATTGAACTCGT
Found at i:34684 original size:21 final size:21
Alignment explanation
Indices: 34659--34699 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
34649 CCAGGCATAA
34659 ACCCC-TGCGGAGGCACCATGT
1 ACCCCATG-GGAGGCACCATGT
*
34680 ACCCCATGGGCGGCACCATG
1 ACCCCATGGGAGGCACCATG
34700 AACTGGCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12
Consensus pattern (21 bp):
ACCCCATGGGAGGCACCATGT
Left flanking sequence: Indices 34159 -- 34658
CCCGGGAAGGGGCTGGCCGTGGGGCGGGACGGGTTGGCCGTGGGGCTGGACGGGTTGGCCCTGGA
CGGGTTGGCCTTGGATAGGCTGGCCCTGGACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGC
TGGCCCTGGATCTGCTGGCCCTGAATGGGTTGACCCTGGATGGGTTGGCCGGGCTGGCCCTGAGG
CTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCTTGAATGGGCTGGCCGGGTTGACCAG
GCTGACCAGGTTGACCATGCGGCTGACCAGGTTGTCCAGGTTGACCAGGCTGACCAGGTTGACCA
GGCTGTCCGGGCTGACCAGGCTGACCCTGACCGGGCTGACCAGGTCCCATAAACTGGCCCATGGG
CATGAACGGGGGCATCCCAGGCCCACCGGGACCACCGGGACCACCAGGCCCACCAGGAGCACCCA
TCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAA
Right flanking sequence: Indices 34700 -- 35199
AACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGT
CAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACT
TGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGGGC
ACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCT
CAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGCCAAAGGTTTCGTCATTGAACTCGT
CGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTCTCCTGGAAGTCGAGTGCTTCTTGT
TTGGGCGCGCCGGAGGCGTCAAACCCAAAGAACGACATGTTTGGTGGTTGCCGTTGGTAAAAAGA
TTTTTATCGTCGACGCAGTGTGTGCAGGAGGGGTGGGGTGGTGGT
Found at i:35209 original size:22 final size:22
Alignment explanation
Indices: 35181--35237 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
35171 AGTGTGTGCA
35181 GGAGGGGTGGGGT-GGTGGTGG
1 GGAGGGGTGGGGTAGGTGGTGG
35202 TGGAGGGGTGGTGGTGAGGTGGTGG
1 -GGAGGGGTGG-GGT-AGGTGGTGG
*
35227 GAAGGGGTGGG
1 GGAGGGGTGGG
35238 CAATTGAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
22 10 0.32
23 4 0.13
24 9 0.29
25 8 0.26
ACGTcount: A:0.09, C:0.00, G:0.72, T:0.19
Consensus pattern (22 bp):
GGAGGGGTGGGGTAGGTGGTGG
Left flanking sequence: Indices 34681 -- 35180
CCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCA
CCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTCGCCA
CCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCATGAA
CTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTGCTGCG
GGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGCCAAAG
GTTTCGTCATTGAACTCGTCGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTCTCCTG
GAAGTCGAGTGCTTCTTGTTTGGGCGCGCCGGAGGCGTCAAACCCAAAGAACGACATGTTTGGTG
GTTGCCGTTGGTAAAAAGATTTTTATCGTCGACGCAGTGTGTGCA
Right flanking sequence: Indices 35238 -- 35737
CAATTGAGGAGTGGAGTTGGAGGAAGGAGAGGGAGTGGTTGGTTGGTTTGAGGTTGGGTTGATTG
GGTTGGTTGTGGTTGCGTTGTTTGTGGTTACGTAGTTTTACTGTGGTTGGCTAGGTGGTTTGTTG
TCTGTGCGGCTGCAACGGATCAAAACAGAAGACGTGGAGGTGGGGTTAATGTGGGGTGGTGGGGA
GTGGGGAGAGGTGGGGAGTGATGAATTGGAATTAGCGGTTATTGTAGGTCAGTGTTGCGGAGAGT
GTTGGGTCGGAGGGGTGAGTGGATTTGAGTGGGTGTATGATGTATACCTGTTTCGGACTATGCAG
CCAAGCAGTGCCAAGGTATAGCGTTTGGTTACAGCACACTGACGTAGGAAATGGTACTAGATGAT
GGGTTTTGCTTATAAGAACTTGTAACCTGTTCAATTGATGCTTGCTTACGTTAGTCGTTCCGATC
TCAAGCTAATTGTTCCTGGTGGAATCCATGGTGGAGAACACCTTA
Found at i:35211 original size:11 final size:11
Alignment explanation
Indices: 35181--35236 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
35171 AGTGTGTGCA
35181 GGAGGGGTGG-
1 GGAGGGGTGGT
*
35191 GGTGGTGGTGGT
1 GGAGG-GGTGGT
35203 GGAGGGGTGGT
1 GGAGGGGTGGT
* *
35214 GGTGAGGTGGT
1 GGAGGGGTGGT
35225 GGGAAGGGGTGG
1 -GG-AGGGGTGG
35237 GCAATTGAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
10 4 0.11
11 20 0.56
12 6 0.17
13 6 0.17
ACGTcount: A:0.09, C:0.00, G:0.71, T:0.20
Consensus pattern (11 bp):
GGAGGGGTGGT
Left flanking sequence: Indices 34681 -- 35180
CCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCA
CCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTCGCCA
CCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCATGAA
CTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTGCTGCG
GGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGCCAAAG
GTTTCGTCATTGAACTCGTCGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTCTCCTG
GAAGTCGAGTGCTTCTTGTTTGGGCGCGCCGGAGGCGTCAAACCCAAAGAACGACATGTTTGGTG
GTTGCCGTTGGTAAAAAGATTTTTATCGTCGACGCAGTGTGTGCA
Right flanking sequence: Indices 35237 -- 35736
GCAATTGAGGAGTGGAGTTGGAGGAAGGAGAGGGAGTGGTTGGTTGGTTTGAGGTTGGGTTGATT
GGGTTGGTTGTGGTTGCGTTGTTTGTGGTTACGTAGTTTTACTGTGGTTGGCTAGGTGGTTTGTT
GTCTGTGCGGCTGCAACGGATCAAAACAGAAGACGTGGAGGTGGGGTTAATGTGGGGTGGTGGGG
AGTGGGGAGAGGTGGGGAGTGATGAATTGGAATTAGCGGTTATTGTAGGTCAGTGTTGCGGAGAG
TGTTGGGTCGGAGGGGTGAGTGGATTTGAGTGGGTGTATGATGTATACCTGTTTCGGACTATGCA
GCCAAGCAGTGCCAAGGTATAGCGTTTGGTTACAGCACACTGACGTAGGAAATGGTACTAGATGA
TGGGTTTTGCTTATAAGAACTTGTAACCTGTTCAATTGATGCTTGCTTACGTTAGTCGTTCCGAT
CTCAAGCTAATTGTTCCTGGTGGAATCCATGGTGGAGAACACCTT
Found at i:35211 original size:14 final size:14
Alignment explanation
Indices: 35186--35226 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
35176 GTGCAGGAGG
*
35186 GGTGGGGTGGTGGT
1 GGTGAGGTGGTGGT
35200 GGTGGAGG-GGTGGT
1 GGT-GAGGTGGTGGT
35214 GGTGAGGTGGTGG
1 GGTGAGGTGGTGG
35227 GAAGGGGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 4 0.17
14 17 0.71
15 3 0.12
ACGTcount: A:0.05, C:0.00, G:0.71, T:0.24
Consensus pattern (14 bp):
GGTGAGGTGGTGGT
Left flanking sequence: Indices 34686 -- 35185
TGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCC
TGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTC
GGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCATGAACTGGT
CGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTGCTGCGGGGCC
TGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGCCAAAGGTTTC
GTCATTGAACTCGTCGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTCTCCTGGAAGT
CGAGTGCTTCTTGTTTGGGCGCGCCGGAGGCGTCAAACCCAAAGAACGACATGTTTGGTGGTTGC
CGTTGGTAAAAAGATTTTTATCGTCGACGCAGTGTGTGCAGGAGG
Right flanking sequence: Indices 35227 -- 35726
GAAGGGGTGGGCAATTGAGGAGTGGAGTTGGAGGAAGGAGAGGGAGTGGTTGGTTGGTTTGAGGT
TGGGTTGATTGGGTTGGTTGTGGTTGCGTTGTTTGTGGTTACGTAGTTTTACTGTGGTTGGCTAG
GTGGTTTGTTGTCTGTGCGGCTGCAACGGATCAAAACAGAAGACGTGGAGGTGGGGTTAATGTGG
GGTGGTGGGGAGTGGGGAGAGGTGGGGAGTGATGAATTGGAATTAGCGGTTATTGTAGGTCAGTG
TTGCGGAGAGTGTTGGGTCGGAGGGGTGAGTGGATTTGAGTGGGTGTATGATGTATACCTGTTTC
GGACTATGCAGCCAAGCAGTGCCAAGGTATAGCGTTTGGTTACAGCACACTGACGTAGGAAATGG
TACTAGATGATGGGTTTTGCTTATAAGAACTTGTAACCTGTTCAATTGATGCTTGCTTACGTTAG
TCGTTCCGATCTCAAGCTAATTGTTCCTGGTGGAATCCATGGTGG
Found at i:35316 original size:24 final size:26
Alignment explanation
Indices: 35277--35331 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
35267 AGGGAGTGGT
*
35277 TGGTTGGTTTGAGGTTGGGTTGATTG
1 TGGTTGGTTTGAGGTTGCGTTGATTG
* *
35303 -GGTTGG-TTGTGGTTGCGTTGTTTG
1 TGGTTGGTTTGAGGTTGCGTTGATTG
35327 TGGTT
1 TGGTT
35332 ACGTAGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.04, C:0.02, G:0.45, T:0.49
Consensus pattern (26 bp):
TGGTTGGTTTGAGGTTGCGTTGATTG
Left flanking sequence: Indices 34777 -- 35276
GATCTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGG
GGGCGTTGGACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCC
AGCGCATACGACACCTGCTGGGGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAA
GTTCCGGTCGAGCTGGTCGGTGCCCACGCCAAAGGTTTCGTCATTGAACTCGTCGTCGGCCTCCT
TGAGGGTGTCGCCGAGCCCGTCGTACGTCTCCTGGAAGTCGAGTGCTTCTTGTTTGGGCGCGCCG
GAGGCGTCAAACCCAAAGAACGACATGTTTGGTGGTTGCCGTTGGTAAAAAGATTTTTATCGTCG
ACGCAGTGTGTGCAGGAGGGGTGGGGTGGTGGTGGTGGAGGGGTGGTGGTGAGGTGGTGGGAAGG
GGTGGGCAATTGAGGAGTGGAGTTGGAGGAAGGAGAGGGAGTGGT
Right flanking sequence: Indices 35332 -- 35831
ACGTAGTTTTACTGTGGTTGGCTAGGTGGTTTGTTGTCTGTGCGGCTGCAACGGATCAAAACAGA
AGACGTGGAGGTGGGGTTAATGTGGGGTGGTGGGGAGTGGGGAGAGGTGGGGAGTGATGAATTGG
AATTAGCGGTTATTGTAGGTCAGTGTTGCGGAGAGTGTTGGGTCGGAGGGGTGAGTGGATTTGAG
TGGGTGTATGATGTATACCTGTTTCGGACTATGCAGCCAAGCAGTGCCAAGGTATAGCGTTTGGT
TACAGCACACTGACGTAGGAAATGGTACTAGATGATGGGTTTTGCTTATAAGAACTTGTAACCTG
TTCAATTGATGCTTGCTTACGTTAGTCGTTCCGATCTCAAGCTAATTGTTCCTGGTGGAATCCAT
GGTGGAGAACACCTTATCTTGCGAACAGACTGGCTTTACTTCGTGTCGTCGGGCAATTCGATCAC
GTTCGCCGAATTGTTGCTAATGGGGGATCAAACCCGTTCAATTGA
Found at i:36141 original size:24 final size:24
Alignment explanation
Indices: 36114--36159 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
36104 ATACTATTAC
*
36114 ACCAGATTGTTAACTCGGGACTAA
1 ACCAGATCGTTAACTCGGGACTAA
36138 ACCAGATCGTTAACTCGGGACT
1 ACCAGATCGTTAACTCGGGACT
36160 GTTTTAGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (24 bp):
ACCAGATCGTTAACTCGGGACTAA
Left flanking sequence: Indices 35614 -- 36113
TGGTACTAGATGATGGGTTTTGCTTATAAGAACTTGTAACCTGTTCAATTGATGCTTGCTTACGT
TAGTCGTTCCGATCTCAAGCTAATTGTTCCTGGTGGAATCCATGGTGGAGAACACCTTATCTTGC
GAACAGACTGGCTTTACTTCGTGTCGTCGGGCAATTCGATCACGTTCGCCGAATTGTTGCTAATG
GGGGATCAAACCCGTTCAATTGATCCTTGCCTTGTGTATTTCTCCAGGTTCTGGCGTTATACCGT
AACAAAGGTGTAGGAAAGATGGTCCCTTCTGATCTCAAGCTGATTGTTCCGATAGAATCCACGGT
GGAGAGCACTTCACCTTACAAACAATTAGTATCGTTGGGCAATTACTCAGCGATTCGTTCGACGG
ATTGTTCCATCGCTACACTCTCACCAACCTGGTGGTATAATCGAGACGACCAACGAAACCGGACT
ATCTCCGCTGCTCCACAAGGACGACCAGCCATACAATACTATTAC
Right flanking sequence: Indices 36160 -- 36659
GTTTTAGATCGCTAACCCGAGGCTATTCTCCACAAGCCTCCCTACCTTCTATCGTCTATACGTTT
ACTCATCCCTCCCGCTACTCTATCTAAACGCGCTCGTAGCACAACACGTAGGCGTCCCGCGACGG
GTGGGTGCGATTGGGCGTCTGCTGGCCCAACGGCACGTTCTCGTGCACCACACTGTCGTCGAAGT
TGCACCAGAACGGGTGGTCAATGTTGTCCCGGTTGGTGGCCGTCTCCTGGTGGTAGGTCAGCTTG
TTCACCGTGGCGGTGTAGTGGCCCGACTTGAGATTGCCGTAGTGGTTGATGATCCCCGAGAGTTT
GTAGGTGATTGTCGGCGAAACGCTCAACAACGTGGGGATCTCAATCATCGTGTCGAGCTTGTCCG
TCATCAGAAACATCAGGAACCGGCTAAAGTGCATGAAAAGCACCTTGGGGTACTTGACCACGGTG
ATCTTCTTGGTGGACGTCGCCGCCTTCGCCGCCTTGGCCAGCTTC
Found at i:37738 original size:15 final size:15
Alignment explanation
Indices: 37718--37807 Score: 153
Period size: 15 Copynumber: 6.0 Consensus size: 15
37708 ACGTCTGTCG
37718 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
37733 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
37748 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
37763 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
37778 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
* * *
37793 GGGTGGTGGGCGGTC
1 TGGTTGCGGGCGGTC
37808 CCACGGCTGT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 72 1.00
ACGTcount: A:0.00, C:0.19, G:0.56, T:0.26
Consensus pattern (15 bp):
TGGTTGCGGGCGGTC
Left flanking sequence: Indices 37218 -- 37717
AACTTGGTGGGCGAGATCACCTGGCCCGCGTAGTTGGAGAACGTCTGGAGCAACGACGCGGTGGC
GTCGGAGAGCAAGAGCACGTCGCGCTTGACGTTGCGGTTGGCGAGCTCCTGCTGGAACTGCGGCC
GCCGGATGTAGTTGTGGTGGTCCTGGGCGAAAATGCGCTTGAAGTCGCCGATGCCAAAAAGCAAC
TGGATCGTCAGGTTGATGTAGCACGACACCCCGAGGTTGCGGAGGCCGCAGATGCGGTACGCCAC
CAGCGGCGGCGGCACGGGCTGGCCCTGGTACGTGGGCATGCGGTTGGTGCTCGACGGGCCGTACG
AGGCTGGGGCGGGCGGCGCGGGCGGGCCAGACACGGGCCCAGCGGCGTAGGGGCCTCCGAACGCG
GGCTGGCCGTGCGGTGGAGGCACCGGAGCGCGGTTGTACGCCTTGGGAGGCAGCGGGTAGTACGG
TTGCGGGGTTGACTGTACCTGGGGCGGGGCCGAGTACGTCTGTCG
Right flanking sequence: Indices 37808 -- 38307
CCACGGCTGTTTCAGCGGGCTCAGATACGGCTGGTACTGGCGGTTCTGGGGACTCTGGTGGGGTG
GGGTCAGATCTACGCTGTAGCTGTGACTGTCGTGGCCAGTCTTGTTCCCGTTCGCGGCCAAGTTC
CGCAGCGGACTGCTGTGCTTCAACCCGTTGGAAAGAGCGCGGGCCGGGTGGTAGCCCCGTGGTCG
CGTGGGATCCCGCTGGGGCGGCTGGATGTAGTCGTCGTCCAAGTGCTCGTGGTCCGGATACGGCG
CCACCACCGAGATCTTCGGGTTCATGGGCGGCAACAGCGGCATCTCCACCGCAGCGCGCTTGGGC
CGTAGCGGCAGCGTCACCTCGTAGTCGCCGGCAAACGTCGTCACCTCGGGCACCGCGGGGAACCG
CTGCTCAAACAGCGCCACCGAGTCGTCCGACCCCTCAAACGAGAACGCATCCAGGCGGTCGTTTG
GGTCGGGCCGGCCCTTATTTATATTTTTTGGGCCGGTCGCGTAGC
Found at i:39448 original size:8 final size:8
Alignment explanation
Indices: 39435--39478 Score: 79
Period size: 8 Copynumber: 5.5 Consensus size: 8
39425 CTGGTGGGAC
39435 GAGAGCGA
1 GAGAGCGA
39443 GAGAGCGA
1 GAGAGCGA
39451 GAGAGCGA
1 GAGAGCGA
*
39459 GAGAGGGA
1 GAGAGCGA
39467 GAGAGCGA
1 GAGAGCGA
39475 GAGA
1 GAGA
39479 AGAGTACGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.39, C:0.09, G:0.52, T:0.00
Consensus pattern (8 bp):
GAGAGCGA
Left flanking sequence: Indices 38935 -- 39434
CTTTTGTTGCGACCCGCGCGTGGAGATCGGAGGTGTACAGGGGTAGTGGCAGCTCCATCGAACAA
CGCGGACAGCGGACAAGCGGTGGCAGCGGGGGCGAGCGGGTGCCAGCAACGTAGTAGGTGCTGCG
ACGCCGCCCTGGTGCAGGGTCAACGTTCTCTGGGGGTTCCTTGGCAATCGGTCGCTTATGTAATT
AAACGAGGCGGAGGGGAGGCGAAGGTACGAGTTGAGAGGTTGCGGTCGTGACGAGCTGGCGCCGC
AGAGGGGCTGCTGGGGCCACCAGGGAGGGTACGTACCGCCATAGCGGGCGGGTTGCGCGGTCTTG
GCGGTCACGTTGGTGACGTCGAACGGCGAGAACCACCTCGCTACCGTAGGCTTCGAATGACCTTA
TGCGCGGAATAGCCACCGGGAATAAGGTGATATGTACGAGAACAGCGGGGACGGGCGGTTTCTTT
TCGTTAGGCGAAGTGACAGGACGGTAGAGGTATAGCTGGTGGGAC
Right flanking sequence: Indices 39479 -- 39978
AGAGTACGGGTGGGAAGTGGAGAGGGAAGAGGCTGCGGGACAACCATGAGTGTTTCAGGTGTAAT
AGTGTAGATCAACGTAGATCAATCGCTGGATGGCCTAGGCAATTCCGGTCGGGGAATTGGCGGCC
CGGTCGCGTGGTTACGTCACAGCCGGATTTAGACTTGGCAGCCACAGGGACAGCATTTTAAGCTA
TACGGCCAAGGGCTTAGTAGACCATTGCTCTTATCTAGGTTGTGGCCCGCTGGTGAAAAATTTGA
GCACTTGGGCGGGTGGTGGCAGCTTCGAAGCCTCTAAGGCGATATTTTTAGGGTGGTCCATCAGC
TTATCCAAGCTACCGGACGTATTTTGGTGTACCAAGTAACTATGTTGCGTATTGGTATGTTACTT
TAAAGTTAGACAGCCAACCAGGTGACTATGGGCCACGCTCCCTTAGTCCCGGATCAACCCCCTTA
CAGCCGCTGGTAGGAGGAAGAATTTGCTATGTTCAAATTCGCTAC
Found at i:40271 original size:11 final size:12
Alignment explanation
Indices: 40242--40273 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
40232 AACACTCGCA
40242 TCCCTCC-CTCC
1 TCCCTCCTCTCC
40253 TCCCTCCTCT-C
1 TCCCTCCTCTCC
40264 TCCCTCCTCT
1 TCCCTCCTCT
40274 TTCTCCGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 18 0.90
12 2 0.10
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (12 bp):
TCCCTCCTCTCC
Left flanking sequence: Indices 39742 -- 40241
CTTGGGCGGGTGGTGGCAGCTTCGAAGCCTCTAAGGCGATATTTTTAGGGTGGTCCATCAGCTTA
TCCAAGCTACCGGACGTATTTTGGTGTACCAAGTAACTATGTTGCGTATTGGTATGTTACTTTAA
AGTTAGACAGCCAACCAGGTGACTATGGGCCACGCTCCCTTAGTCCCGGATCAACCCCCTTACAG
CCGCTGGTAGGAGGAAGAATTTGCTATGTTCAAATTCGCTACCCTCGCACCATATTCACTACCAA
ATCGGGCAAAGTATCTGATACACGGAGAAACCCCTTAAACCACGCAAAACACCGCTTAAAGTGAC
TAGATCCCGACACCCCCTCCGCAATCCGAGCCATGTTCGGTCTCATCACCTCAAAACCCCTAATT
GAACCGTCTCGCTCCACAACCCACAGCCTCTACAACACACTTTCAAACCCCGACAATTCCTCTCT
CCTACCTCCATTACCCTTTACGGACCAATTTTATCAACACTCGCA
Right flanking sequence: Indices 40274 -- 40773
TTCTCCGTCCTTTTTCTCCGTCTTCCACCCACTTCATCACCGTTCCGATCGAACGCGACGCGTAT
GCAACGATGGCAGCGTGCCCGCTATGTAACCAGGACGTCCCCGACGACGACCTAGAGCGTCACGT
GAACCGGTGTCTCGACCAGCAGGAGAGCCAGCCCGCAAAGAGGCCCCTCCGGACACTTGGATCCC
AAAAGAAGAAGCCCCAGGCCACCAAACGACGCCAGCCCCTGCTCACAAGCGCGTTGATCGCGACG
AAACGACGGCTGGTCCAGAGCGAGGACGACGATGTGACGGTTTTGCTGGTGAGGGAGACCTCCCC
GGGAGAGACCGTGGTCAAAATCGAGGCCACTGACGCGGTGGCAGACGCAGTGACCCCGCAAAATG
GAAACGGGGACGCGTCCGGAGCCGACTCCGAGGCGAAAAACGGGCCCGAAAGCAACCGGGAAGAG
GCTAACGATGGCTCCGGAGACTCCAAAGAACATACGAAGACAGAG
Found at i:40284 original size:13 final size:13
Alignment explanation
Indices: 40262--40295 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
40252 CTCCCTCCTC
*
40262 TCTCCCTCCTCTT
1 TCTCCGTCCTCTT
*
40275 TCTCCGTCCTTTT
1 TCTCCGTCCTCTT
40288 TCTCCGTC
1 TCTCCGTC
40296 TTCCACCCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.47, G:0.06, T:0.47
Consensus pattern (13 bp):
TCTCCGTCCTCTT
Left flanking sequence: Indices 39762 -- 40261
TTCGAAGCCTCTAAGGCGATATTTTTAGGGTGGTCCATCAGCTTATCCAAGCTACCGGACGTATT
TTGGTGTACCAAGTAACTATGTTGCGTATTGGTATGTTACTTTAAAGTTAGACAGCCAACCAGGT
GACTATGGGCCACGCTCCCTTAGTCCCGGATCAACCCCCTTACAGCCGCTGGTAGGAGGAAGAAT
TTGCTATGTTCAAATTCGCTACCCTCGCACCATATTCACTACCAAATCGGGCAAAGTATCTGATA
CACGGAGAAACCCCTTAAACCACGCAAAACACCGCTTAAAGTGACTAGATCCCGACACCCCCTCC
GCAATCCGAGCCATGTTCGGTCTCATCACCTCAAAACCCCTAATTGAACCGTCTCGCTCCACAAC
CCACAGCCTCTACAACACACTTTCAAACCCCGACAATTCCTCTCTCCTACCTCCATTACCCTTTA
CGGACCAATTTTATCAACACTCGCATCCCTCCCTCCTCCCTCCTC
Right flanking sequence: Indices 40296 -- 40795
TTCCACCCACTTCATCACCGTTCCGATCGAACGCGACGCGTATGCAACGATGGCAGCGTGCCCGC
TATGTAACCAGGACGTCCCCGACGACGACCTAGAGCGTCACGTGAACCGGTGTCTCGACCAGCAG
GAGAGCCAGCCCGCAAAGAGGCCCCTCCGGACACTTGGATCCCAAAAGAAGAAGCCCCAGGCCAC
CAAACGACGCCAGCCCCTGCTCACAAGCGCGTTGATCGCGACGAAACGACGGCTGGTCCAGAGCG
AGGACGACGATGTGACGGTTTTGCTGGTGAGGGAGACCTCCCCGGGAGAGACCGTGGTCAAAATC
GAGGCCACTGACGCGGTGGCAGACGCAGTGACCCCGCAAAATGGAAACGGGGACGCGTCCGGAGC
CGACTCCGAGGCGAAAAACGGGCCCGAAAGCAACCGGGAAGAGGCTAACGATGGCTCCGGAGACT
CCAAAGAACATACGAAGACAGAGACCTCCGGGCAGTCACAACCGC
Found at i:48854 original size:22 final size:22
Alignment explanation
Indices: 48829--48881 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
48819 TAGGGTCCCC
48829 ATCAACTCACACTCATCGACCT
1 ATCAACTCACACTCATCGACCT
*
48851 ATCAACTCACACTCATCGATCT
1 ATCAACTCACACTCATCGACCT
48873 ATCAACTCA
1 ATCAACTCA
48882 AGACCCACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.38, G:0.04, T:0.25
Consensus pattern (22 bp):
ATCAACTCACACTCATCGACCT
Left flanking sequence: Indices 48329 -- 48828
TCGGGGCCGAGGACTTGGCACTGGAGATTCCGGCCGAAATCTTGGCCAAGGGGGCCAACCGGCTC
CTGGTGGAGGAGTGGGACACGTTGTGGACGGCGTTCAGCAACTGGCCGTTCAAGCCGAGCGTGTT
GGATACCTACGACATGCTGATTGACGAGCGGCGGGTGTAGAGAGGTGTATTGCATTCGTTGTTGT
ATTTTGATGGGTACCGGGTATTTCAGGGTGGAAGTTCTGTGGGAGTCACTACGGTCCTGAGGTTG
ATACTATTCACTCGTGCGGTCACAAATCTGCCTACGGGTTATACCAGTGTCCATGGTATTAACAG
CATGATGTCACCGGTGTGCAAACTGTTCATGGTACCACATAAATTTGTACTCACAACCCATGCGC
TGGGACCTTAGCTGATCAAACCGACCAAAAGCACCCATAAACCAACACTCATCAATCCAGCACCA
CTAACGCCACTCATCACTCATCAACTTAACATTCATAGGGTCCCC
Right flanking sequence: Indices 48882 -- 49381
AGACCCACTACCCACACCCACCCATCACCCATCACCCACACCCACACCCACACCCACCCTACATC
ACTTAAATAACCTTGTATATATTACATCCTATCCACTTTTCGTGTTCACGTTCGGAAGGTTGGCA
AACATCTGCACCAACTTGCCCGGGTTGTAGCCACTGCCATGGCCAAAATACAGCGAGTTCGGAAG
CACCTTGAGCAAGTTGGTGATCGCCGGCGTGACAAACTGCGGCTCCTCGTCCACCACGGGGCTGT
CGCGGACCCGGGCCTTCGCCCGGTCGTTGCGGGCCCGCTCCACCGGTACCTCGGTCACCACCTTG
ATGGTCTTGCGGCGCTTGGGCTGGGCGTCGTCCTCCTCGTCGTCGGAGTCCAACTCGTAGTGGTT
GATGACGTTGGTGCCGCCATCGCTGCGGTAGCGGTCGGTGAACAACTCGATGGGGTCGTCCCCGG
GGAACAACTGCTCGTACTTCAGAATAAACAGGTCGGCCACGTCCA
Found at i:48902 original size:6 final size:6
Alignment explanation
Indices: 48884--48938 Score: 69
Period size: 6 Copynumber: 9.0 Consensus size: 6
48874 TCAACTCAAG
48884 ACCCAC TACCCAC A-CC-C ACCCATC ACCCATC ACCCAC ACCCAC ACCCAC
1 ACCCAC -ACCCAC ACCCAC ACCCA-C ACCCA-C ACCCAC ACCCAC ACCCAC
48933 ACCCAC
1 ACCCAC
48939 CCTACATCAC
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
4 2 0.04
5 4 0.09
6 20 0.44
7 19 0.42
ACGTcount: A:0.31, C:0.64, G:0.00, T:0.05
Consensus pattern (6 bp):
ACCCAC
Left flanking sequence: Indices 48384 -- 48883
CAACCGGCTCCTGGTGGAGGAGTGGGACACGTTGTGGACGGCGTTCAGCAACTGGCCGTTCAAGC
CGAGCGTGTTGGATACCTACGACATGCTGATTGACGAGCGGCGGGTGTAGAGAGGTGTATTGCAT
TCGTTGTTGTATTTTGATGGGTACCGGGTATTTCAGGGTGGAAGTTCTGTGGGAGTCACTACGGT
CCTGAGGTTGATACTATTCACTCGTGCGGTCACAAATCTGCCTACGGGTTATACCAGTGTCCATG
GTATTAACAGCATGATGTCACCGGTGTGCAAACTGTTCATGGTACCACATAAATTTGTACTCACA
ACCCATGCGCTGGGACCTTAGCTGATCAAACCGACCAAAAGCACCCATAAACCAACACTCATCAA
TCCAGCACCACTAACGCCACTCATCACTCATCAACTTAACATTCATAGGGTCCCCATCAACTCAC
ACTCATCGACCTATCAACTCACACTCATCGATCTATCAACTCAAG
Right flanking sequence: Indices 48939 -- 49438
CCTACATCACTTAAATAACCTTGTATATATTACATCCTATCCACTTTTCGTGTTCACGTTCGGAA
GGTTGGCAAACATCTGCACCAACTTGCCCGGGTTGTAGCCACTGCCATGGCCAAAATACAGCGAG
TTCGGAAGCACCTTGAGCAAGTTGGTGATCGCCGGCGTGACAAACTGCGGCTCCTCGTCCACCAC
GGGGCTGTCGCGGACCCGGGCCTTCGCCCGGTCGTTGCGGGCCCGCTCCACCGGTACCTCGGTCA
CCACCTTGATGGTCTTGCGGCGCTTGGGCTGGGCGTCGTCCTCCTCGTCGTCGGAGTCCAACTCG
TAGTGGTTGATGACGTTGGTGCCGCCATCGCTGCGGTAGCGGTCGGTGAACAACTCGATGGGGTC
GTCCCCGGGGAACAACTGCTCGTACTTCAGAATAAACAGGTCGGCCACGTCCATCAGGAGGTACG
CGTGCGCGTAGCGGATGTACTCCTTGAGCAACCGCTTGAGCCACG
Found at i:51579 original size:10 final size:10
Alignment explanation
Indices: 51538--51614 Score: 102
Period size: 10 Copynumber: 7.4 Consensus size: 10
51528 TCTTCTCCGA
51538 CCTCCATTCCT
1 CCTCCATT-CT
51549 CCTCTC-TCTCT
1 CCTC-CAT-TCT
51560 CCTCCCATTCT
1 CCT-CCATTCT
51571 CCTCCATTCT
1 CCTCCATTCT
51581 CCTCCATTCT
1 CCTCCATTCT
51591 CCTCCATTCT
1 CCTCCATTCT
*
51601 CCTCCATCCT
1 CCTCCATTCT
51611 CCTC
1 CCTC
51615 TCCACCCATA
Statistics
Matches: 61, Mismatches: 1, Indels: 9
0.86 0.01 0.13
Matches are distributed among these distances:
10 40 0.66
11 17 0.28
12 4 0.07
ACGTcount: A:0.08, C:0.55, G:0.00, T:0.38
Consensus pattern (10 bp):
CCTCCATTCT
Left flanking sequence: Indices 51038 -- 51537
CGTCGAGGTTGACCCGGGACATGTTGGTTGTTGAGGTTACTCGCGTGGTGATGAAGATTTCGCGC
CGCGCTACCAGGTGGGTAAGAAGGCGTGGAGAAGGTATGGAGGAAGGCATGGAAGAGGAAGAAGG
AGGAAGAAGGGGGGAGGAAGGAGAGAAGGAGGAAAAGGGAATTGGTTATGTGGCTATTGGTGTTT
GTGGTTACGGATTCGAATCGGGTTTGTTTTGGGTAAACGCTGGTAATAGGGTAGTTCGTTGGTAG
TGTTATTAAGAGGTTTGCCATGAATTGAGAGTAACGCAATTGTGCTGTGTGTGTTGAAGTAGTTT
TCTGGTTCCTTTCTCAACGGGTAGTACCAACCTCAGAGGTATATTGGAGTATCTTACCGGAATTG
TCTACCTCCGGAGATGTTACTAGATATGGCAATTGTGAAAGCATCACCTTCAATTTCCTTCTCTC
CACCTCGACTCCCTCTCCTTCCTCTCCTCTACCTCTCTTCTCCGA
Right flanking sequence: Indices 51615 -- 52114
TCCACCCATATCACCGCACAGTGCGGCTTTTTTCACCATGACTACCCTCTACGTGTGGGGCCGAG
AGGGCACCATCAGCTCGATCTTCCCGGAACTGCTAGCCGCAGCGTGGGTGATGGCCGAGTCCTCC
CACCCGGTCACCGTGGTCACCGCCAACAACACCAACCTCTCGTCCATCGGCAAGCTCCCCGTGCT
TGTCACCCCGGAAGGCAAACTACAGGGCTACCGAGCCATTGCCCGCTACGCTCGGGGCAAGGGAC
CGTCTGATCTTGTTGCCAGCGGCCAGTTGGCGATGATGGCCAACCAGTTCGACGCCCTCACCAAC
TACGTGTACTTTGTCAACCTGCGCAACTACGAGGAGTACACCCGCAAGGTGTTTGGCAACTACTT
CCCGTTCCCAATGATGTACAACCAGCCCCTCCACTTCTACAACTGTGCCCAGCGCCAGGCCCACT
ACCACGGGTTGAACCCAAACAAGGGCGGGCTCTTTTCGTTCGACG
Found at i:57198 original size:12 final size:12
Alignment explanation
Indices: 57178--57224 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
57168 TGCAGCAAAT
57178 ATGGCAACCACC
1 ATGGCAACCACC
*
57190 ATGGTAACCACC
1 ATGGCAACCACC
* *
57202 ACGACAACCACC
1 ATGGCAACCACC
57214 ATGGCAACCAC
1 ATGGCAACCAC
57225 TACGGCAGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.36, C:0.40, G:0.15, T:0.09
Consensus pattern (12 bp):
ATGGCAACCACC
Left flanking sequence: Indices 56678 -- 57177
CGTGTGGGTTGTATGTGGAAGGAACCTCAATGGCACGGTGAAAAATGCAACAAGCCAGGTGAGGG
TTTTAAATGTAGTGAAAAGAAATCCGATCTTAATAAAAAAACCGTAAAGGAAGTGTCCGACGCGG
GCCCTCCTGCACACAACCCGGTCATACCTACGTGCGGTTGCACTATTGTCAGCAACTTTTTTCGC
GCGGTTATTGGCTGTTGTGCCAGGGCCGAGTCCGGACGCCTCGTGCCCGCAGTTCGCACTTCAAA
GTGGCGTCAGGCCCAGCCAATAGACTGTGGGTCGATAGTAATGGTGCTTAATGTGGGGAACATCT
AAGCGAACGATGGCAGCGACATGTCAGTCCCGGCAAAAGCACCGGGGCGATGCGCTGACCCATCA
CCTTAGTAGTCACGGGATGCGGGATTTGCGCCACCAGCAACCGTGACTGTTTTTTGTGTCGCGAT
CACCAGCGAGGTGAGATCGTCAGGCAGCAGGTGACTGCAGCAAAT
Right flanking sequence: Indices 57225 -- 57724
TACGGCAGGTGGTCAAGACGTAGATGACCAAAAGCACGGTGCCACGGCGATTTTCCCCGGAATGA
TTACTCAATTGTTGTAGACACGGCGCTCTATTATTCGCGGTCAATGATAACGACGACTACGCCGC
GTGGTCTAGACAACTGACAAGGCGCGGGGCTACAGTAGTGAACTCGGTACCAGACAAACGGTCTG
GTGACGTATCCGTCAGCCCTGCCACCGTTGCCAAAAAAAGCTTCGTGGGCTGGTGTTTACCATTC
GCCCCACTATTTTTAGAATTCGCGATTACAAATCAGGCGGCGGGCTGCGAACCAGAGCCCACCAC
GGGAGGTCAGCTTTCTTGGCCACCACGAAAACAGCGGCGCAGAAAGCGCCACAGTCGGCATCTCC
ACCGGCGAAACCCCAAGTTTTGTGCTTGTGTCCCGAGTTACAATTGACCGCCCACCTTCTCTGCA
GCGAACCCTGCGAAACACGCTAATCCGGTGGAAATTTTCATATAC
Found at i:57231 original size:12 final size:12
Alignment explanation
Indices: 57180--57231 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
57170 CAGCAAATAT
*
57180 GGCAACCACCAT
1 GGCAACCACCAC
*
57192 GGTAACCACCAC
1 GGCAACCACCAC
* *
57204 GACAACCACCAT
1 GGCAACCACCAC
*
57216 GGCAACCACTAC
1 GGCAACCACCAC
57228 GGCA
1 GGCA
57232 GGTGGTCAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.35, C:0.40, G:0.17, T:0.08
Consensus pattern (12 bp):
GGCAACCACCAC
Left flanking sequence: Indices 56680 -- 57179
TGTGGGTTGTATGTGGAAGGAACCTCAATGGCACGGTGAAAAATGCAACAAGCCAGGTGAGGGTT
TTAAATGTAGTGAAAAGAAATCCGATCTTAATAAAAAAACCGTAAAGGAAGTGTCCGACGCGGGC
CCTCCTGCACACAACCCGGTCATACCTACGTGCGGTTGCACTATTGTCAGCAACTTTTTTCGCGC
GGTTATTGGCTGTTGTGCCAGGGCCGAGTCCGGACGCCTCGTGCCCGCAGTTCGCACTTCAAAGT
GGCGTCAGGCCCAGCCAATAGACTGTGGGTCGATAGTAATGGTGCTTAATGTGGGGAACATCTAA
GCGAACGATGGCAGCGACATGTCAGTCCCGGCAAAAGCACCGGGGCGATGCGCTGACCCATCACC
TTAGTAGTCACGGGATGCGGGATTTGCGCCACCAGCAACCGTGACTGTTTTTTGTGTCGCGATCA
CCAGCGAGGTGAGATCGTCAGGCAGCAGGTGACTGCAGCAAATAT
Right flanking sequence: Indices 57232 -- 57731
GGTGGTCAAGACGTAGATGACCAAAAGCACGGTGCCACGGCGATTTTCCCCGGAATGATTACTCA
ATTGTTGTAGACACGGCGCTCTATTATTCGCGGTCAATGATAACGACGACTACGCCGCGTGGTCT
AGACAACTGACAAGGCGCGGGGCTACAGTAGTGAACTCGGTACCAGACAAACGGTCTGGTGACGT
ATCCGTCAGCCCTGCCACCGTTGCCAAAAAAAGCTTCGTGGGCTGGTGTTTACCATTCGCCCCAC
TATTTTTAGAATTCGCGATTACAAATCAGGCGGCGGGCTGCGAACCAGAGCCCACCACGGGAGGT
CAGCTTTCTTGGCCACCACGAAAACAGCGGCGCAGAAAGCGCCACAGTCGGCATCTCCACCGGCG
AAACCCCAAGTTTTGTGCTTGTGTCCCGAGTTACAATTGACCGCCCACCTTCTCTGCAGCGAACC
CTGCGAAACACGCTAATCCGGTGGAAATTTTCATATACGAGCCCC
Found at i:97692 original size:8 final size:8
Alignment explanation
Indices: 97681--97761 Score: 99
Period size: 8 Copynumber: 10.1 Consensus size: 8
97671 AGAGTGGAGT
*
97681 AGTGAGGC
1 AGTGAAGC
*
97689 AGTGAACC
1 AGTGAAGC
*
97697 AGTGAACC
1 AGTGAAGC
*
97705 AGTGAACC
1 AGTGAAGC
*
97713 AGTGAACC
1 AGTGAAGC
97721 AGTGAAGC
1 AGTGAAGC
97729 AGTGAAGC
1 AGTGAAGC
*
97737 AGTGGAGC
1 AGTGAAGC
97745 AGTGAAGC
1 AGTGAAGC
*
97753 AGTGGAGC
1 AGTGAAGC
97761 A
1 A
97762 TTGACGTGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 67 1.00
ACGTcount: A:0.35, C:0.17, G:0.36, T:0.12
Consensus pattern (8 bp):
AGTGAAGC
Left flanking sequence: Indices 97181 -- 97680
ACGACGAGTTGCTCGAGTTGGTCAAGGACGGCGCCATTGGCCGCGACTACGTGTTGTTTGACGCG
CGGCCGCGCGAGCGGTTTGACGGCTCGGTGGCCGAGCCTCGCGCCGGGTTGAAGCTGGGCCACAT
TCCCGGGTCGACCCTGGTGCCGTTCCCCACCGTGCTCACTGCGGACAAGAACTTCAAGCTGAAGG
CCGAGCTCCAGAAGGTGTTTGGCGACGCTGGGTTCGACACCCTGCTGGCGCTGGCGTTTTTGGAC
GGCAAAAAGGGGGTGATTGTGTCGTGTGGGTCTGGGACCACCGCGGTGGTGTTGCGGTTTGCCAT
CCAGCAGGTGTTGGGGTTGAACGTGCCCATCCGGGTGTACGACGGGTCGTGGAGCGAGTGGGGCC
ACCGGGCGCCCGAGGAGTACGTGGAAAAGCTGTAGAGTAGACAATAGCATAGACAGAGAGAGGAT
TGAAGGAGTGGAGCCGTAGAATATTGGAGCACTGGAGAGTGGAGT
Right flanking sequence: Indices 97762 -- 98261
TTGACGTGCACTGAGTGTAGCATTAAAGTGATCTGAAAGAGCATTGAAGTGGGGTACCAGAGTGT
TAACTCCATTCACGGGCAGCTTACTGGCCATTGGTCAAGTCTTGTCATTAGTGAATAGAACGTAA
CTATCATCGTGGCTTTGTCAAAAGGGGTGATTACTGATAAGATGACATCATTGGAGGGGTGTAAT
TACGACAGCGACAAAATGAGGATTGTAATTGATGACATCATTGGGGAATGTGCCAAGACATCATT
ACGAGGCGTCGTTTGATTGTAATTAAGATGAGATGGGGCGGGGAGTGGAACGTGCTAATTGATAA
GAAACAAGCGAATGTGAGGGGTAGTAAACCAGTCGCTCGTAACACCCGAAAATACAGCATTCGCC
TGGTAGAGTGCCCACACTCGCGTTCAAGAGCATCACCGACCGACCCTTCGAAGTAGCCAAACTCC
GACTCTATCCACAGTTCCCACATTACCCTTTCCCATCCTACACCT
Found at i:97757 original size:16 final size:16
Alignment explanation
Indices: 97660--97761 Score: 98
Period size: 16 Copynumber: 6.4 Consensus size: 16
97650 CGTAGAATAT
* *
97660 TGGAGCACTGGAG-AG
1 TGGAGCAGTGAAGCAG
* *
97675 TGGAGTAGTGAGGCAG
1 TGGAGCAGTGAAGCAG
* * *
97691 TGAACCAGTGAACCAG
1 TGGAGCAGTGAAGCAG
* * *
97707 TGAACCAGTGAACCAG
1 TGGAGCAGTGAAGCAG
*
97723 TGAAGCAGTGAAGCAG
1 TGGAGCAGTGAAGCAG
97739 TGGAGCAGTGAAGCAG
1 TGGAGCAGTGAAGCAG
97755 TGGAGCA
1 TGGAGCA
97762 TTGACGTGCA
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
15 9 0.12
16 65 0.88
ACGTcount: A:0.32, C:0.16, G:0.38, T:0.14
Consensus pattern (16 bp):
TGGAGCAGTGAAGCAG
Left flanking sequence: Indices 97160 -- 97659
ACAAGCGCGAGGTGATCGAGTACGACGAGTTGCTCGAGTTGGTCAAGGACGGCGCCATTGGCCGC
GACTACGTGTTGTTTGACGCGCGGCCGCGCGAGCGGTTTGACGGCTCGGTGGCCGAGCCTCGCGC
CGGGTTGAAGCTGGGCCACATTCCCGGGTCGACCCTGGTGCCGTTCCCCACCGTGCTCACTGCGG
ACAAGAACTTCAAGCTGAAGGCCGAGCTCCAGAAGGTGTTTGGCGACGCTGGGTTCGACACCCTG
CTGGCGCTGGCGTTTTTGGACGGCAAAAAGGGGGTGATTGTGTCGTGTGGGTCTGGGACCACCGC
GGTGGTGTTGCGGTTTGCCATCCAGCAGGTGTTGGGGTTGAACGTGCCCATCCGGGTGTACGACG
GGTCGTGGAGCGAGTGGGGCCACCGGGCGCCCGAGGAGTACGTGGAAAAGCTGTAGAGTAGACAA
TAGCATAGACAGAGAGAGGATTGAAGGAGTGGAGCCGTAGAATAT
Right flanking sequence: Indices 97762 -- 98261
TTGACGTGCACTGAGTGTAGCATTAAAGTGATCTGAAAGAGCATTGAAGTGGGGTACCAGAGTGT
TAACTCCATTCACGGGCAGCTTACTGGCCATTGGTCAAGTCTTGTCATTAGTGAATAGAACGTAA
CTATCATCGTGGCTTTGTCAAAAGGGGTGATTACTGATAAGATGACATCATTGGAGGGGTGTAAT
TACGACAGCGACAAAATGAGGATTGTAATTGATGACATCATTGGGGAATGTGCCAAGACATCATT
ACGAGGCGTCGTTTGATTGTAATTAAGATGAGATGGGGCGGGGAGTGGAACGTGCTAATTGATAA
GAAACAAGCGAATGTGAGGGGTAGTAAACCAGTCGCTCGTAACACCCGAAAATACAGCATTCGCC
TGGTAGAGTGCCCACACTCGCGTTCAAGAGCATCACCGACCGACCCTTCGAAGTAGCCAAACTCC
GACTCTATCCACAGTTCCCACATTACCCTTTCCCATCCTACACCT
Found at i:99820 original size:17 final size:17
Alignment explanation
Indices: 99798--99842 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
99788 CACCAGCGAC
99798 CAGGCCCGCACAGTGAT
1 CAGGCCCGCACAGTGAT
99815 CAGGCCCGCGCACAGTGAT
1 CAGG-CC-CGCACAGTGAT
*
99834 CGGGCCCGC
1 CAGGCCCGC
99843 GCACAGGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.18, C:0.40, G:0.33, T:0.09
Consensus pattern (17 bp):
CAGGCCCGCACAGTGAT
Left flanking sequence: Indices 99298 -- 99797
GATATCACATGGTCTGCCACGGCTTCTGCCACCCCCTCGAACCGGGGGAACAGGTAGATTAAGGG
CACCTGTGTTGTCATACGAATCGGCATTTTTTTTTGCTACGCACGAATTTTGATAAGGTGGGGAG
GCGTGGTTCGCGGCAGCACGGGACGGCCACCACGCTGCGGGCGCGGGGAGGGGTGGGCAGCGACG
GGTGGCGGTGGTGGCAACCCAGTCGTGGGGGGCAGGAGCCAAAACACGCGTGTGCAAGCGAGCCA
GCCGCCCGTATTGTGTCGGACCCCTCCGCGCGATCCGGATCCACAAAACCCCTCGATCACCCGCC
CACCCACTCTACGAGTAGCACCGGACAACTGGCCAGCCGTTGCGTGACACGGGTGGCGCTACGAA
GGTTGGCGAGAGCGGTTGCATAGACACCCCTGGCGCGCTGGCGTGTTGCAACCGTGGTGCCAGCG
CGAATGAGTCATGGTGGTGACTTTCGCAGTAGGCTCACCAGCGAC
Right flanking sequence: Indices 99843 -- 100342
GCACAGGGATCGGGCCCACGCAGTAGAGAACGCGGTGGGGCGAATCTACACTGACGGGCCCACTG
TCAACTCTGCCGGCGAACCACGCCATTTTTGTGTCAGTGGCTGCAGCGGCGGCGCCATTTGCCAG
CACCCCGTCGCCCCGATTGCGAGGTGGTAGCCCGACCCTGACGACGCGGGCGGTTGTTCGTATTG
GCCGCTTTTGGCCGCGTGGTTGTCGTGCACTGTCCAACCACCTCGTCCTCGACTCGATCAGAAGG
GATATGCAAGATAGCGGGGGGAAGAGACAATATTTTTTATCGGGATCAACAATAGCTTATACTCG
AATCGGGAGCAGAGCATCGCTGGCAGCGGTGGTGCGTAGGGGTCGAGCAGCCCAAGCCCAACAAA
CGGGCCAAACGGGCCAAACTGGCGCCACCGGTGGGCCCAACCACTAACGACAACGGGACGTAGAC
CACCGTGGCACTACGAGCTACACACCCTGGCTGGCACCCCACGCG
Found at i:99828 original size:19 final size:19
Alignment explanation
Indices: 99804--99864 Score: 95
Period size: 19 Copynumber: 3.2 Consensus size: 19
99794 CGACCAGGCC
*
99804 CGCACAGTGATCAGGCCCG
1 CGCACAGTGATCGGGCCCG
99823 CGCACAGTGATCGGGCCCG
1 CGCACAGTGATCGGGCCCG
* *
99842 CGCACAGGGATCGGGCCCA
1 CGCACAGTGATCGGGCCCG
99861 CGCA
1 CGCA
99865 GTAGAGAACG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.20, C:0.38, G:0.34, T:0.08
Consensus pattern (19 bp):
CGCACAGTGATCGGGCCCG
Left flanking sequence: Indices 99304 -- 99803
ACATGGTCTGCCACGGCTTCTGCCACCCCCTCGAACCGGGGGAACAGGTAGATTAAGGGCACCTG
TGTTGTCATACGAATCGGCATTTTTTTTTGCTACGCACGAATTTTGATAAGGTGGGGAGGCGTGG
TTCGCGGCAGCACGGGACGGCCACCACGCTGCGGGCGCGGGGAGGGGTGGGCAGCGACGGGTGGC
GGTGGTGGCAACCCAGTCGTGGGGGGCAGGAGCCAAAACACGCGTGTGCAAGCGAGCCAGCCGCC
CGTATTGTGTCGGACCCCTCCGCGCGATCCGGATCCACAAAACCCCTCGATCACCCGCCCACCCA
CTCTACGAGTAGCACCGGACAACTGGCCAGCCGTTGCGTGACACGGGTGGCGCTACGAAGGTTGG
CGAGAGCGGTTGCATAGACACCCCTGGCGCGCTGGCGTGTTGCAACCGTGGTGCCAGCGCGAATG
AGTCATGGTGGTGACTTTCGCAGTAGGCTCACCAGCGACCAGGCC
Right flanking sequence: Indices 99865 -- 100364
GTAGAGAACGCGGTGGGGCGAATCTACACTGACGGGCCCACTGTCAACTCTGCCGGCGAACCACG
CCATTTTTGTGTCAGTGGCTGCAGCGGCGGCGCCATTTGCCAGCACCCCGTCGCCCCGATTGCGA
GGTGGTAGCCCGACCCTGACGACGCGGGCGGTTGTTCGTATTGGCCGCTTTTGGCCGCGTGGTTG
TCGTGCACTGTCCAACCACCTCGTCCTCGACTCGATCAGAAGGGATATGCAAGATAGCGGGGGGA
AGAGACAATATTTTTTATCGGGATCAACAATAGCTTATACTCGAATCGGGAGCAGAGCATCGCTG
GCAGCGGTGGTGCGTAGGGGTCGAGCAGCCCAAGCCCAACAAACGGGCCAAACGGGCCAAACTGG
CGCCACCGGTGGGCCCAACCACTAACGACAACGGGACGTAGACCACCGTGGCACTACGAGCTACA
CACCCTGGCTGGCACCCCACGCGGGCCTATTGTCCACATTCCCAC
Found at i:101298 original size:23 final size:22
Alignment explanation
Indices: 101267--101360 Score: 109
Period size: 23 Copynumber: 4.2 Consensus size: 22
101257 GTTTCAGAAG
101267 TTTGAGCCGTGGCATAGGCT-CA
1 TTTGAGCCGTGGCATAGG-TACA
101289 TATTGAGCCGTGGCATAGGTACA
1 T-TTGAGCCGTGGCATAGGTACA
* * *
101312 TTTTTATCCGTGGCACAGGTACA
1 -TTTGAGCCGTGGCATAGGTACA
* *
101335 TTTTAGCCGTGGCATAGGTTCA
1 TTTGAGCCGTGGCATAGGTACA
101357 TTTG
1 TTTG
101361 TAGGCTCATT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
22 24 0.39
23 37 0.60
24 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (22 bp):
TTTGAGCCGTGGCATAGGTACA
Left flanking sequence: Indices 100767 -- 101266
CCCGCGAGCGGAAGCGACTGTCGCCGTTGCCTGATCCCACCATCAGCTTTGACGAGACGCGGCGG
CGGCCTGGCGACATGCCGGATTTCGACGACGAGTACGAGATCAAGAAGGGGCTCCGGGTCCAGCC
GCCGCCGGTGGGGGGATTGCCGTCCATCGGCTCGCAGGACTTGGATCCCGTGCACCCGCAGTTTA
CCCCGTACTTGGGTCCCGGCGCGGGGGGACCGGTGATAGGCGACGGCGGGATGGTCCCGCTGAAG
GACCACCCGTTGTTCCGCGGCGGGGGGAGACAGGCGGGCCGCCCGGGTTTGCCACCGGGCGCCCG
CTACGACGAACCGTTTGGGGGCGACAACCTCGACGGGTTCGGGGGCAACTTTGGCGGAAACTTTG
GCGGCGGGCCCCCCAATTTTATGTGATTAATACTACAGGCATGGCGGTGAACGCGTTGGTGTGGG
TAGGCACCTATTGTAGAAGCACGGTTTCAGATTACGTTTCAGAAG
Right flanking sequence: Indices 101361 -- 101860
TAGGCTCATTTCGGTGGTGGTTTTGGTCGTAGGCTTATTTAGCCGTGGCTCATTAGCCATGGCTC
AATTCAGGGTATTCAGGGAGGCCCGTTCCAGCCCGTTCCAGCTCACACAATAGAAACGTTAGACA
CAGCCCTAGGCCGTTTAACGCTCGCTTGACGTATTGCCGCTTTCGATAAGCCACGTTCCCCTGCT
TTGTACCCCCACGGTGATCTCATGACACGTCCTCGAGGGCGACGCGTGCATAGCCACCTCCAGGT
TTCTCCTTCCCACTATCGCAATGGCAACGCCGTTGTGCCTAATCGGGCAGTTTTTGTCGATGTGC
GCACTGCACACAGTCCAAAAGCGATGCGCCGTGCTGTCGGCAATCGCCTCGGTGTTCTAAGGGAT
CTAGAGATAATGACTACCGAAGGAAAGAAACGTCAGAGGCTTTGCTGGGCGCTGATCGCAGCGCT
ATCGCCGCGCCAGTGGGTGGGGGGTGCCCCACCCTGTCGTTGCCG
Found at i:114493 original size:27 final size:27
Alignment explanation
Indices: 114457--114525 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
114447 GAGTGACGAA
*
114457 GACGACAGTGAC-AGCGACAGCAGTGAC
1 GACGACAGTGACGA-CGAAAGCAGTGAC
* *
114484 GACGAGAGTGACGACGAAAGCAGTGAT
1 GACGACAGTGACGACGAAAGCAGTGAC
114511 GACGACAGTGACGAC
1 GACGACAGTGACGAC
114526 AGTGACGACA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.35, T:0.09
Consensus pattern (27 bp):
GACGACAGTGACGACGAAAGCAGTGAC
Left flanking sequence: Indices 113957 -- 114456
CGAAGTTGCGCGACCACCCATTCAAGGACGAGGAGGAGTTTCGTCACTACTACCACCAGATGTTG
ATGTACATGCGCCGGATGTACCAGGTGTGTCGTCTCGTGCACGCTGACTTGTCCGAATACAACTC
TATTGTCCACAACGACACTTTATACATTATCGATGTCTCCCAGCTGGTGGAGCCCGAGCACCCGA
TGGCGCTCGACTTTTTGCGCATGGACATCAAGAACGTCAACGACTACTTTGCCAAAAAGATCCAC
GTTCACCCGGAAAGGCTCATTTTCAAGTACATTGTGGAAGAGAAACTCGAAGACGACCCCGAAGT
CCTTCTCGACTTTGCAAAGAACATGCCCTACAAAACCACACATGACGATGAGGTCGAGGATGAGG
TGTTCCGGTCTTTGCACTTTGTTCGTACCCTCAATGCCTTGGAGGAGCGCGATTTCGATAAATTC
CAAGAAGGCAAGGTTGATGCGTTCGACTTGGTCAAGAGTGACGAA
Right flanking sequence: Indices 114526 -- 115025
AGTGACGACAGCGACGACGAAAGCGATGAAGAGGGCGAGGACGGCGAGCGCCGCAAACGCGACAA
GGGCCCTCCCAAGTTGAAGAAGTTTGAAGATAAGGATGAAAAGAAGGCCCGCAAGGAAGCTGCCA
AGCAGGCTAAAGCGGAAAAGCGCAAAACTAAGATGAAGAAGCACATCAAGAAGAAAATTGTTGCC
AAGCGCAAAACCAAGTAATCATCCATTGCATATACACGTTTACTCATTGAGCGCCAGCTCACGCA
TGCCTATCCTGTCCATGGTGAAGAGGGCAACCCAGTACAAAAGGTATCCCACCCCTCCCGCCACC
AAGATGGCAATCAACAAAATAAACATAAACACCAACAGGTAGAACACCAACTCCAATTGCGAGTA
TTTAGGGAAATCGCGCGGTGGGAGGGTGCTGTCGCGTCGGACCTTGTGTTTGTGCAAGAGACTTT
CAAGATGCTCTTGATCTTCAGAGGTCATTCCATCGATGAACTTTT
Found at i:114508 original size:15 final size:14
Alignment explanation
Indices: 114448--114525 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
114438 CTTGGTCAAG
* *
114448 AGTGACGAAGACGAC
1 AGTGACGACGAAG-C
114463 AGTGAC-AGCGACAGC
1 AGTGACGA-CGA-AGC
114478 AGTGACGACG-AG-
1 AGTGACGACGAAGC
114490 AGTGACGACGAAAGC
1 AGTGACGACG-AAGC
*
114505 AGTGATGACG-A-C
1 AGTGACGACGAAGC
114517 AGTGACGAC
1 AGTGACGAC
114526 AGTGACGACA
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
12 19 0.36
13 3 0.06
14 3 0.06
15 26 0.49
16 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.35, T:0.09
Consensus pattern (14 bp):
AGTGACGACGAAGC
Left flanking sequence: Indices 113948 -- 114447
AGCCCAGTCCGAAGTTGCGCGACCACCCATTCAAGGACGAGGAGGAGTTTCGTCACTACTACCAC
CAGATGTTGATGTACATGCGCCGGATGTACCAGGTGTGTCGTCTCGTGCACGCTGACTTGTCCGA
ATACAACTCTATTGTCCACAACGACACTTTATACATTATCGATGTCTCCCAGCTGGTGGAGCCCG
AGCACCCGATGGCGCTCGACTTTTTGCGCATGGACATCAAGAACGTCAACGACTACTTTGCCAAA
AAGATCCACGTTCACCCGGAAAGGCTCATTTTCAAGTACATTGTGGAAGAGAAACTCGAAGACGA
CCCCGAAGTCCTTCTCGACTTTGCAAAGAACATGCCCTACAAAACCACACATGACGATGAGGTCG
AGGATGAGGTGTTCCGGTCTTTGCACTTTGTTCGTACCCTCAATGCCTTGGAGGAGCGCGATTTC
GATAAATTCCAAGAAGGCAAGGTTGATGCGTTCGACTTGGTCAAG
Right flanking sequence: Indices 114526 -- 115025
AGTGACGACAGCGACGACGAAAGCGATGAAGAGGGCGAGGACGGCGAGCGCCGCAAACGCGACAA
GGGCCCTCCCAAGTTGAAGAAGTTTGAAGATAAGGATGAAAAGAAGGCCCGCAAGGAAGCTGCCA
AGCAGGCTAAAGCGGAAAAGCGCAAAACTAAGATGAAGAAGCACATCAAGAAGAAAATTGTTGCC
AAGCGCAAAACCAAGTAATCATCCATTGCATATACACGTTTACTCATTGAGCGCCAGCTCACGCA
TGCCTATCCTGTCCATGGTGAAGAGGGCAACCCAGTACAAAAGGTATCCCACCCCTCCCGCCACC
AAGATGGCAATCAACAAAATAAACATAAACACCAACAGGTAGAACACCAACTCCAATTGCGAGTA
TTTAGGGAAATCGCGCGGTGGGAGGGTGCTGTCGCGTCGGACCTTGTGTTTGTGCAAGAGACTTT
CAAGATGCTCTTGATCTTCAGAGGTCATTCCATCGATGAACTTTT
Found at i:114524 original size:9 final size:9
Alignment explanation
Indices: 114510--114543 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
114500 AAAGCAGTGA
114510 TGACGACAG
1 TGACGACAG
114519 TGACGACAG
1 TGACGACAG
114528 TGACGACAG
1 TGACGACAG
*
114537 CGACGAC
1 TGACGAC
114544 GAAAGCGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.32, T:0.09
Consensus pattern (9 bp):
TGACGACAG
Left flanking sequence: Indices 114010 -- 114509
CACCAGATGTTGATGTACATGCGCCGGATGTACCAGGTGTGTCGTCTCGTGCACGCTGACTTGTC
CGAATACAACTCTATTGTCCACAACGACACTTTATACATTATCGATGTCTCCCAGCTGGTGGAGC
CCGAGCACCCGATGGCGCTCGACTTTTTGCGCATGGACATCAAGAACGTCAACGACTACTTTGCC
AAAAAGATCCACGTTCACCCGGAAAGGCTCATTTTCAAGTACATTGTGGAAGAGAAACTCGAAGA
CGACCCCGAAGTCCTTCTCGACTTTGCAAAGAACATGCCCTACAAAACCACACATGACGATGAGG
TCGAGGATGAGGTGTTCCGGTCTTTGCACTTTGTTCGTACCCTCAATGCCTTGGAGGAGCGCGAT
TTCGATAAATTCCAAGAAGGCAAGGTTGATGCGTTCGACTTGGTCAAGAGTGACGAAGACGACAG
TGACAGCGACAGCAGTGACGACGAGAGTGACGACGAAAGCAGTGA
Right flanking sequence: Indices 114544 -- 115043
GAAAGCGATGAAGAGGGCGAGGACGGCGAGCGCCGCAAACGCGACAAGGGCCCTCCCAAGTTGAA
GAAGTTTGAAGATAAGGATGAAAAGAAGGCCCGCAAGGAAGCTGCCAAGCAGGCTAAAGCGGAAA
AGCGCAAAACTAAGATGAAGAAGCACATCAAGAAGAAAATTGTTGCCAAGCGCAAAACCAAGTAA
TCATCCATTGCATATACACGTTTACTCATTGAGCGCCAGCTCACGCATGCCTATCCTGTCCATGG
TGAAGAGGGCAACCCAGTACAAAAGGTATCCCACCCCTCCCGCCACCAAGATGGCAATCAACAAA
ATAAACATAAACACCAACAGGTAGAACACCAACTCCAATTGCGAGTATTTAGGGAAATCGCGCGG
TGGGAGGGTGCTGTCGCGTCGGACCTTGTGTTTGTGCAAGAGACTTTCAAGATGCTCTTGATCTT
CAGAGGTCATTCCATCGATGAACTTTTCAAAATCGTTTGGGTGCA
Found at i:116572 original size:17 final size:17
Alignment explanation
Indices: 116550--116583 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
116540 GCAAGAAACA
116550 AACCAA-GTTGATAGTCG
1 AACCAATGTTG-TAGTCG
116567 AACCAATGTTGTAGTCG
1 AACCAATGTTGTAGTCG
116584 TTCGTAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (17 bp):
AACCAATGTTGTAGTCG
Left flanking sequence: Indices 116050 -- 116549
TCACGCAAGATTTTGTTCACCAAGATGCGCTCCTGACGCTCTGTGTACCAGCCCTTCGGTCTGAA
CCACGTCTTGGATGCAACCACCAGTGGTACCATTTGGAAGAATGCCCAGATGCCAATCAACAAAG
TGATGAGTCCCTCGATGATGAACAACCATTGCCAACCATAGCCGATAAGGCTAGTTTTGATTTCC
AAAAGCCCAAGAGACAACAACAGCGACACCACCAGGGTGAACGGGATCAGAATGTAGAAAAAGCC
CATACGCATAGGAAGCTCAGGTCCAGTATAGAAGTATGACATCCACAAACACACATCAGCAATGA
ACCCACCTTGCCAGGCACCCAACAAGCCACGCGTGATGAAAAACCCAGCCTTACCCGTCAACGAC
GCCTGACAGATAGACACAATACTCCATGCAACCATCTGAATGGGGATCCAAATCTCTGGACCCAA
CTTTTTCGAGATCAACTGCAGCGGAAGCTCAGCCAGCAAGAAACA
Right flanking sequence: Indices 116584 -- 117083
TTCGTAGTCAAGTTGAGATCGTCCAAGAAGTCATCAGCAAGCGCCTGCTTGAGATTGTACCGATC
CAAATTGAGGGCAGTGAAGCAGATGAAAGTAAACAAGCACACATTGATGTCATTGATCCAGGTGA
TCTTGCGCTCCTCTTGAGGTGTCCAAGTGAGTTCAGGTTCCAAGAGGTGCCGACACTCATAGTCG
TTGTCTTCGTATAACTTGGTGTAGTACTTGAGCTTCAGTGGGTCCTGGAAGACGTGTGTGTCCTC
CGAGGAGGTAGACTCGAGGTCAACCACGGACTCTTCAAATTGCTGCTTCTTGTCGTCGCTCATAG
CCTCCTTACGAGGGAGAAGAGGCTCTTTTATGGGGTCGACCATACTGAATTTGCCTTTTCAACAC
AATCATGATTGCGTTTACGCCATTTCGTAGGTGTGGCCGAAGTGATCTCAAACTGTGGTGGTTGC
AAAAATAATAACAATAGCGCAGGAGATCGTTGCAAGGTAACAGGG
Found at i:120430 original size:11 final size:11
Alignment explanation
Indices: 120412--120446 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
120402 TAACATCCAC
120412 CAACGATCTAT
1 CAACGATCTAT
*
120423 CGACGATCTAT
1 CAACGATCTAT
*
120434 TAACGATCTAT
1 CAACGATCTAT
120445 CA
1 CA
120447 CCCATTCGCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (11 bp):
CAACGATCTAT
Left flanking sequence: Indices 119912 -- 120411
GGGCTCGCTTAAATTCGATTATCACACCCATCAAAGCCTGCACACAGCCGGAGGCGCCTACGAGA
GATCGCATAGGTAATGGCGCAGTAGCAACCTTGGGCGGCTTGTAGGCGGTGGGAGGGCGCCAGGA
CCGTCTCTAGTGTCGTTTGTAGTGGGCCAGGTCCCTCGAAATGGCCTGATGCGTCGGACGGGGGC
CAGAGCACCCCGCCAGTCTTGGGCGATCTTGCCTGCACGCCACCGGGGTTGCTAACTAGACGTAA
TTTTCACTCAATCTGTCGCTGCATATGTACGACGTGTGAAGTCATACCGATAGTCGGCCTAGCAG
TGGGTCTAGCTCTGGTTTGAGGTGGTATTTGTAAGCGGGGCTTACGGGGGTACCGAGCCAATTGC
CGGTGGCTCAATTCTAACGTAGAGAGAGATATGAAGCGAAGCCTTGTAGTTTCACCCATCATAAG
TAACTAACCCTCAAGACTCTCCAACGACAATCAATTAACATCCAC
Right flanking sequence: Indices 120447 -- 120946
CCCATTCGCCCCAACTTCAGTCTTCCAACTGCCAGCCGCACATGCGCGGCGCGCTTCACCATCTT
TTTTTCACAACGCGCCCCAGCACAACAACACCCTCGTGCTCAAGCCATGCTGCAACAAATCAGTT
CGCAGGGACAAAACAAGGCGCCCGCGCCTCCGGCAGGGGCGGCGCCCGGAGTGAGCTACACTCCC
ACCGACTTGAACATCCCCCCTGAGCTCTATGACAAAATCCCCAACCTTGAGTTGTACCAGCAGTT
GAAAAAGCAGGAGAGGGAAATCGACCTTTTGATCAGTCGCAAGGCGCTCGACTTCCAGGCCATTC
AGCAGAAACTGTTCCACCCGTCCAACGTGGCCACCGAGACCGGGCTTTTGCGGGTTTTCATCTAC
AACACCTGCGAGGACCAGCCATGGCAGGGGAACAAGGGCGACGGGGAGCCGACGTGGACGTTGCG
GGTGGAGGGCCGGTTTATCGCGGACAGCGACGCCACCACCATCCC
Found at i:122029 original size:9 final size:9
Alignment explanation
Indices: 122015--122055 Score: 73
Period size: 9 Copynumber: 4.6 Consensus size: 9
122005 CTGGTAACAA
122015 ATATGACAG
1 ATATGACAG
*
122024 ATATGAAAG
1 ATATGACAG
122033 ATATGACAG
1 ATATGACAG
122042 ATATGACAG
1 ATATGACAG
122051 ATATG
1 ATATG
122056 TCTTGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (9 bp):
ATATGACAG
Left flanking sequence: Indices 121515 -- 122014
GTGGTGGTGGACATCCCCATCGAGTTGCCGTTGAACATGTCCAAGTACCAGAAGGAGGCGCTTGA
GTTCAACAAGCAGGCGTTTGAGAACTTGACCAAGGCGGACACCGCCATCCTGCAACTCAACCAGA
AGATCTCGCTTGCGATTGTCAGTCTCCAGAACGCCAACGCGCGCGAGCAGTTCTACCGCGAGCTT
GCCGAGGACCCGGCCAAGTTTGTAGACCAGTGGCTCAAGACACAGCTGGAGACCCTCAAGGCGCT
CAAGAGCGACGAGGGCTACGACGAGGAGTTGGTGCGTCGCGCCCAGTTCTTTGAGGACAACGAGG
CGTTGATCCGCGACAAGATCAGTTTGTTGTTGGGCACCAACCGGTTCACTTAATGTATTATAATT
AACGGATAGTAAAGAGGGCTGTGGGTTCAGAGAGTAGGATTTTAGTTGGATTTGAGCTGATAAGG
GGAAGTAGAACCAAGAGGATAGAATACTTTCTCCGCTGGTAACAA
Right flanking sequence: Indices 122056 -- 122555
TCTTGATTTTCAGAAAATTCGTCAATTCGTCACTGTAGGATCAAGCTAGAGTTGAGGAATCCACC
GGTAGAGCCCGTATATAACAAGATGTCTTATCTCTTAGACGAACCTTTACGAGCTTATTCCATAC
TCGTCCTACGCAATACTTTTCACAGCAACCCCAAATCCACTACAACCAATTCCCAAGATAACTTA
TTCATTACTGTTCGTTGTATCACTAGTTAGCGAGTATCGCTGCGTCTCAATTGGCACACCACACC
AACCCCGCGGGCAATGTTTATTAGGATTAGCACATTTCCTCCTGGCGCAACACCACGGGGAGCGT
ATTGGAAAGGTACTGGTGTAAATGCAAGATAGATGACGTGTAGGACAGCACGGCCGACGCCGACA
GCGACGCCGCGGTCAAGAGCTGCAGCGCCAGCTTGGCAGCAGGGCCCTTCTCCTCGAGCGCCGCC
AACACCTCCGCCAAGTGGGCGACAAACTTCTTTAGCTGGGTGCCG
Found at i:125902 original size:16 final size:16
Alignment explanation
Indices: 125881--125921 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
125871 CACCCCCGAG
125881 CCACCCGCCACGGCAA
1 CCACCCGCCACGGCAA
* *
125897 CCACCCACCACGGCTA
1 CCACCCGCCACGGCAA
125913 CCA-CCGCCA
1 CCACCCGCCA
125922 ACCAGCCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.24, C:0.59, G:0.15, T:0.02
Consensus pattern (16 bp):
CCACCCGCCACGGCAA
Left flanking sequence: Indices 125381 -- 125880
TCGGGTGGCGATTCGAGGCGGCGCGCGGTAGAAACGGGTGCTAGGCCCACATGATTAGCGTGTGG
GTGCATGGCCGTGATTGACAGGGCACCAGGCCCCCCGAGCACTCCACTCTGCGGCAGGCTGGTGG
AAGCGAGCGGCCACCACCACCGAACCACGGGCTAACTCTACAAAGCCTCCACGCAGACCCATGGC
CCCACGCCGCGAGGCGCGCGGCAACGCACTCCGGCGAATCCGTGTCCCCGTGGCCGTCTCGGGCC
TATTCCGCCCCTTTCGCACCCTCCACCTCTCCTACAGACTACTGAGGCTAGTGCGAACGCGTCTG
CTAAATTTTAGTAAGATCTTAGTCGCGGCTACAAAAACACCGCCGTCCCACACACCACCACCACC
TCTCTTATCTCTAGCCTCTGCAGCCCGGGCGCCCTCGTGCTATCTGCCCCCATGGCGTAACATCG
TCGATCCCGCGCCGCACCAAGTGCGCGGTGGGGATCACCCCCGAG
Right flanking sequence: Indices 125922 -- 126421
ACCAGCCCACCCAACCACCCGACCACCACCACCCTCCTCTCCTCCCTCCACCTCCTCCACCCACG
CGTGGCCCCCACGTGACGATTTTTTCTCCTCTCGGCACAAACGCGCTTGAGGCCACCTCGACTTT
TTTCGGTAACCAACACTCGCATTTTTTAATTAACAACAACTGTCGAGGCTAGGGAGACGATGCTG
GTTTACACTAGTGACATCAAGCACCACCGTCGCGCCCCGCCTCCGCCGGGGCTGGGCGACCACCA
GGTGGCGCCCGGCGTGGGCGGACCCGGCGCAGCGCTGGTGCTGGCAACCAAGCGCCACGCGGGGT
GGGTCCACCTCAAGGACGATGGCATCTTCACGCTGTTCCGGTGGAACAAGCGGTACATGGTGATG
AGCGACAAGACGGTCAACTTCTACCGCCACGACGGCGACATTTCGTCGCAGCAGCCCGACCTCCT
GTTCCCGCTCAACCTCATAGCCACCATCAACTTGAAGCCGCTGAC
Found at i:154924 original size:51 final size:51
Alignment explanation
Indices: 154851--154962 Score: 215
Period size: 51 Copynumber: 2.2 Consensus size: 51
154841 GAAAGACAAC
*
154851 ACCATACTTCTATCCATACGCCATTTTTTGCGGCAATCCCTTACGCGACAT
1 ACCATACTTCTATCCATACGCCATTTTTTGCGGCAATCCCTAACGCGACAT
154902 ACCATACTTCTATCCATACGCCATTTTTTGCGGCAATCCCTAACGCGACAT
1 ACCATACTTCTATCCATACGCCATTTTTTGCGGCAATCCCTAACGCGACAT
154953 ACCATACTTC
1 ACCATACTTC
154963 GTTACATTCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.25, C:0.34, G:0.11, T:0.30
Consensus pattern (51 bp):
ACCATACTTCTATCCATACGCCATTTTTTGCGGCAATCCCTAACGCGACAT
Left flanking sequence: Indices 154351 -- 154850
GTGGTTCACCAAGCGGTTCCAGGCGGCGGACCTCGCTGACCGCACGCTTGTGGTGGTGAACAACC
AGCCGCGCCCGTTTGCGTTCCGCGACACTTTGGCTGCGGGTGAGGAGGAGTTGGACTGGCCCAAG
CTGTGGGTGGAACGTGGCCGTGGCAAGGGCTCGGAGTGGGTGCAAGACTTGGTCACCGACGAAAG
AGTCACTGGCCGCATGCGTGCCTACGACAATTCGAAGGAGTTGTAGACCATGTAAATAGATTACG
AATAGACGTTAATTAGGAACGAGGAGTGGTTTGTACCGAGGCTAGTGGTGAGCGGAGAGGAGTGA
AGGATGGGTGGCGCTGGATGATGTCGTTTTCTTCTGGGTGGTTCGTGGGATGTTTGACTGGAATA
TTTGGAGGGTCTACATGAGGTAAAGTATGTCGTGGATTAGAGCGGCCTATAGCGCTTAGACGAGA
AAAGGACCGTCAAAATAGGGCTAGGCCATTTGTTCGAAAGACAAC
Right flanking sequence: Indices 154963 -- 155462
GTTACATTCCGTCGTTATTATTACATTCCTATTATCCCTCGTAAGTGGGCACCCTCACGACCGCT
TCCACACGGTATAGTTATACTTGTAGATCCCCTCTTCCACGTCCCTCTCCACCGGCCCGCCAAAG
TGGGTCTCCAACTCCTGGTGCGTCAGCTGCGTCCACGCTGCCCAGTCAAAATCCAAAAAGGTGTC
CATCTCCACCAATTCCGACGCCACAATGTCCGTGAGGAACAACTGCGTCACCCGGGGGTCACGCG
CAGCTGCGTTGTACACCTGGGCGCCCCCAATAATATAGATGTTGTCAAGGGGTTCGTTGGCGAGC
TTCTCAAACGCGTCATCAAGCGAGAGCGCGTGGATAATGCGAGGGTCAGCCTCTGCAGGGGCTAC
CCGGCTCAACACCACGTTGATCCGGTCCGGGAGCGGGCGGAACTTGGGGGGAATCAGGTCCCACG
TCTTGCGCCCCATGATCACTGCGTTGTTCCCGCGGGAAGTGAGGT
Done.