sallet_3.scaffold.fasta.s54.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold72
Parameters: 2 7 7 80 10 50 500
Length:  121525

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887--1050	42	3.9	42	78	3	177	30	17	21	31	1.96
885--1050	84	2.0	84	85	2	226	30	16	21	31	1.95
1430--1475	23	2.0	23	100	0	92	43	17	21	17	1.88
4935--4966	11	3.1	11	82	17	50	28	46	18	6	1.73
4924--4986	20	3.0	22	77	17	78	31	49	14	4	1.64
5047--5071	9	2.8	9	100	0	50	8	56	0	36	1.29
7468--7505	12	3.2	12	84	0	58	31	0	34	34	1.58
7739--7779	9	4.7	9	90	6	66	12	31	2	53	1.51
7739--7776	17	2.2	17	95	0	67	10	31	2	55	1.48
10918--10960	20	2.2	20	87	8	61	6	0	60	32	1.23
10938--10987	10	5.4	9	75	20	50	18	0	52	30	1.46
10931--10969	17	2.4	17	95	4	71	10	0	56	33	1.33
10958--11009	20	2.7	20	84	3	70	19	1	48	30	1.60
11003--11142	20	7.4	20	74	15	95	15	8	45	30	1.75
11930--11985	11	5.1	11	88	0	76	0	35	1	62	1.06
14400--14443	16	2.8	16	100	0	88	38	40	0	20	1.53
15133--15354	24	9.7	23	72	17	103	26	22	31	18	1.97
15133--15218	25	3.6	24	83	12	97	24	24	30	20	1.99
15291--15361	22	3.1	22	71	11	70	28	19	32	19	1.97
15231--15361	47	2.8	46	84	5	156	25	22	32	18	1.97
15553--15599	24	2.0	24	100	0	94	27	34	17	21	1.95
17984--18024	9	4.4	9	82	17	57	12	26	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17990--18028	19	2.1	19	100	0	78	15	28	15	41	1.87
19376--19428	12	4.5	12	92	2	90	16	54	16	11	1.70
20064--20090	14	1.9	14	100	0	54	18	37	7	37	1.79
20806--20904	25	4.2	25	75	15	84	31	41	21	6	1.77
20840--20866	10	2.7	10	100	0	54	29	51	18	0	1.46
20825--20904	12	6.9	12	84	7	69	33	40	20	6	1.77
20943--21019	19	4.1	19	75	9	68	33	1	40	24	1.64
21024--21052	9	3.2	9	100	0	58	10	0	55	34	1.34
21081--21151	15	4.5	15	79	10	70	15	2	46	35	1.61
21172--21198	8	3.4	8	100	0	54	0	11	33	55	1.35
22056--22114	20	2.9	20	73	12	57	13	5	62	18	1.48
24386--24422	9	4.1	9	100	0	74	10	10	45	32	1.74
24413--24442	13	2.3	13	100	0	60	6	6	56	30	1.51
25147--25190	15	2.9	15	100	0	88	20	45	20	13	1.85
25213--25293	40	2.0	40	90	2	128	19	34	6	39	1.77
26064--26155	16	5.8	16	92	0	121	14	26	18	41	1.88
26424--26448	13	1.9	13	100	0	50	28	8	32	32	1.86
27054--27159	39	2.6	39	85	10	142	32	33	7	27	1.85
27137--27217	34	2.3	36	91	4	130	29	39	7	23	1.82
29257--29339	19	4.3	19	84	3	112	36	33	13	16	1.88
29257--29339	39	2.2	38	91	2	130	36	33	13	16	1.88
29386--29586	32	6.1	32	74	18	146	32	28	6	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29415--29586	66	2.6	65	86	7	215	32	28	5	33	1.81
33896--34060	31	5.4	31	84	5	201	26	27	23	22	1.99
34046--34095	26	1.9	26	88	8	75	20	34	22	24	1.97
36346--36411	19	3.4	19	83	10	89	13	34	0	51	1.41
36346--36430	38	2.2	39	87	8	120	12	35	1	50	1.48
36354--36430	19	4.1	18	79	17	77	12	35	1	50	1.49
38887--38929	19	2.3	19	95	0	77	18	20	48	11	1.79
39140--39194	8	6.9	8	80	0	65	40	3	21	34	1.71
39415--39472	26	2.2	26	81	6	62	27	31	18	22	1.97
40560--40634	12	5.8	12	76	11	51	24	25	25	25	2.00
40572--40623	15	3.7	15	82	7	56	23	25	23	28	1.99
40553--40649	42	2.4	39	81	11	115	23	25	23	26	2.00
40555--40649	27	3.6	24	74	19	82	24	25	23	27	2.00
40644--40682	18	2.2	18	90	0	60	30	15	33	20	1.94
42325--42356	13	2.5	13	100	0	64	6	6	56	31	1.49
42386--42425	11	3.5	11	86	3	53	7	20	20	52	1.70
43181--43223	23	1.9	22	85	4	59	41	23	16	18	1.89
50890--50942	16	3.3	16	86	0	79	3	49	7	39	1.49
50899--50952	16	3.5	15	82	5	56	5	55	7	31	1.51
51044--51073	12	2.5	12	94	0	51	16	46	36	0	1.47
52113--52190	21	3.9	21	78	10	90	11	28	26	33	1.91
54099--54178	18	4.5	18	77	3	81	17	32	30	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56158--56196	11	3.5	11	89	0	60	33	35	7	23	1.83
56478--56541	21	3.3	21	72	20	66	12	32	0	54	1.38
56479--56548	20	3.6	20	70	20	58	10	35	0	54	1.34
58501--58542	20	2.2	20	83	12	52	21	0	71	7	1.09
58908--58943	11	3.4	11	84	7	56	30	27	19	22	1.98
60924--60963	15	2.7	15	92	3	64	32	52	2	12	1.52
61019--61063	15	3.0	15	93	0	72	35	51	4	8	1.54
61056--61088	9	3.7	9	100	0	66	42	57	0	0	0.98
61124--61150	8	3.4	8	100	0	54	11	62	0	25	1.28
61190--61229	22	1.9	20	90	10	62	10	50	0	40	1.36
73792--73840	9	5.9	9	72	18	52	0	14	48	36	1.44
73796--73846	16	3.2	16	100	0	102	0	11	50	37	1.39
76604--76657	16	3.4	16	100	0	108	11	18	35	35	1.86
76580--76661	32	2.6	33	84	7	116	10	21	30	36	1.88
76977--77045	19	3.6	20	86	5	90	44	24	8	21	1.80
76961--77071	38	3.1	35	75	11	91	45	27	6	20	1.75
86273--86352	21	3.9	21	76	14	94	37	1	40	21	1.61
89871--89913	12	3.6	12	83	0	59	55	2	27	13	1.51
94713--94738	8	3.2	8	100	0	52	38	38	0	23	1.55
94733--94804	16	4.5	16	100	0	144	13	30	11	44	1.79
97801--97845	16	2.8	16	93	0	72	42	37	2	17	1.62
97931--97956	12	2.2	12	100	0	52	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97953--98043	16	5.8	16	75	14	73	32	42	1	23	1.61
97951--98037	38	2.2	38	83	4	102	33	42	1	22	1.61
97992--98058	24	2.8	24	77	11	66	34	44	0	20	1.52
105254--105311	20	2.9	20	89	0	80	32	25	13	27	1.94
109006--109036	14	2.2	14	100	0	62	38	0	41	19	1.51
116400--116449	11	4.5	11	97	2	91	16	46	8	30	1.75

Tables:   1

The End!