Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold72
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 121525
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1039 original size:42 final size:42
Alignment explanation
Indices: 887--1050 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
877 ATCATGCTAT
* * * * *
887 CATTGTACAGAGTAAGTATAGAAACGTTTCGCTTCAAGTTAG
1 CATTCTACTGAGTAAGTGTAGAAACGTTTTGCTCCAAGTTAG
* * * ** * *
929 CATTCTCCCT-AATAAGTGTAGAAATGCGTTGCTCCAAGTAAT
1 CATTCT-ACTGAGTAAGTGTAGAAACGTTTTGCTCCAAGTTAG
*
971 CATTGTACTGAGTAAGTGTAGAAACGTTTTGCTCCAAGTTAG
1 CATTCTACTGAGTAAGTGTAGAAACGTTTTGCTCCAAGTTAG
* *
1013 CATTCTGCTGAGTAAGTGTAGAAACGTTTTGCACCAAG
1 CATTCTACTGAGTAAGTGTAGAAACGTTTTGCTCCAAG
1051 GTTTTCAACT
Statistics
Matches: 97, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
41 2 0.02
42 94 0.97
43 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (42 bp):
CATTCTACTGAGTAAGTGTAGAAACGTTTTGCTCCAAGTTAG
Left flanking sequence: Indices 387 -- 886
GATTTTATACTTGTTTGCGTACTCCCTGATCTTACGAGAGTTTACTTTAGCAACTGTATCCCAAT
CGAACTCAAAATAGGTCTTGGATGACTTCCTGGAGTAGAGATACCAACACCCGTCGTCTAACCGA
GATCCTTCGATGTCGCTGATGTTGCAAGCATCCATCTCTCTACCAATATCCACTTGAAAAATCTC
ACGGAGCAGGTTTATCACACACGGCCTGCCCCCAGGAAGGAAGAAGAACTCAACAGGGGGCCAAG
GCGTGCCCAATTTGGACTCGGCAACGAACTGAGGAGAAGAGAGGCACGTACGGTCCTGAATGCAG
GAGGCTTCCAACCGTTGCTCTGCTTTTTCTACCCATACGTTACTTGCTTCGCGGTTATCATCATG
TTCTACTTCACTTCTTCTTTGAGCCACTCGGTTCATCACTGGTTGCAGGTCTCGAAGCATTCGCT
CGACAGTGATTTCAACAAAATCCCCTATGCCTTCCATCATGCTAT
Right flanking sequence: Indices 1051 -- 1550
GTTTTCAACTGCTCATATTTTTCCTTCAGAATCATGACCATAGTCAACTCGTCATTCTCAAGGCA
TGTCATATAAACCGGAGTCTCGTTCGGTTTGATTTGGCTGCTTTCATCGATTTCACTAGGAGTGG
ACATTTCGAAAGTCGACAGTTGGGTCATGTCTTTCTGGGCGAATTTATGGCGCTTTAAATAGTGT
GGTGACAAAATCATAATAAAAACACCCCCTTAACCGAAGGAGGTGTGTCGCGGAGGTCGCTTCCC
TCACCCACCCTGGAGTAGACGTGTGGCAAGTATCCCTTTTCGGCGAGGTGCGTCAAGCCGTGCGT
CTGGGGTCACGAGGCTTACGATTTAAGCCAGTAGTCGGGGACGACTGGTGCTTTCCAATATATGA
AACAGCATGGAGCCAATATATGAAACAGCATGGAGGGACCAAAGCTGAGCGGGTTTGGGTATTGA
CTGGGGTCCGGGTGGTAAGTGTTCCCTACATTACCTCTCACTACT
Found at i:1050 original size:84 final size:84
Alignment explanation
Indices: 885--1050 Score: 226
Period size: 84 Copynumber: 2.0 Consensus size: 84
875 CCATCATGCT
*
885 ATCATTGTACAGAGTAAGTATAGAAACGTTTCGCTTCAAGTTAGCATTCTCCCTAATAAGTGTAG
1 ATCATTGTACAGAGTAAGTATAGAAACGTTTCGCTCCAAGTTAGCATTCTCCCTAATAAGTGTAG
* *
950 AAATGCGTTGCTCCAAGTA
66 AAACGCGTTGCACCAAGTA
* * * * *
969 ATCATTGTACTGAGTAAGTGTAGAAACGTTTTGCTCCAAGTTAGCATTCT-GCTGAGTAAGTGTA
1 ATCATTGTACAGAGTAAGTATAGAAACGTTTCGCTCCAAGTTAGCATTCTCCCT-AATAAGTGTA
**
1033 GAAACGTTTTGCACCAAG
65 GAAACGCGTTGCACCAAG
1051 GTTTTCAACT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
83 2 0.03
84 69 0.97
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (84 bp):
ATCATTGTACAGAGTAAGTATAGAAACGTTTCGCTCCAAGTTAGCATTCTCCCTAATAAGTGTAG
AAACGCGTTGCACCAAGTA
Left flanking sequence: Indices 385 -- 884
CTGATTTTATACTTGTTTGCGTACTCCCTGATCTTACGAGAGTTTACTTTAGCAACTGTATCCCA
ATCGAACTCAAAATAGGTCTTGGATGACTTCCTGGAGTAGAGATACCAACACCCGTCGTCTAACC
GAGATCCTTCGATGTCGCTGATGTTGCAAGCATCCATCTCTCTACCAATATCCACTTGAAAAATC
TCACGGAGCAGGTTTATCACACACGGCCTGCCCCCAGGAAGGAAGAAGAACTCAACAGGGGGCCA
AGGCGTGCCCAATTTGGACTCGGCAACGAACTGAGGAGAAGAGAGGCACGTACGGTCCTGAATGC
AGGAGGCTTCCAACCGTTGCTCTGCTTTTTCTACCCATACGTTACTTGCTTCGCGGTTATCATCA
TGTTCTACTTCACTTCTTCTTTGAGCCACTCGGTTCATCACTGGTTGCAGGTCTCGAAGCATTCG
CTCGACAGTGATTTCAACAAAATCCCCTATGCCTTCCATCATGCT
Right flanking sequence: Indices 1051 -- 1550
GTTTTCAACTGCTCATATTTTTCCTTCAGAATCATGACCATAGTCAACTCGTCATTCTCAAGGCA
TGTCATATAAACCGGAGTCTCGTTCGGTTTGATTTGGCTGCTTTCATCGATTTCACTAGGAGTGG
ACATTTCGAAAGTCGACAGTTGGGTCATGTCTTTCTGGGCGAATTTATGGCGCTTTAAATAGTGT
GGTGACAAAATCATAATAAAAACACCCCCTTAACCGAAGGAGGTGTGTCGCGGAGGTCGCTTCCC
TCACCCACCCTGGAGTAGACGTGTGGCAAGTATCCCTTTTCGGCGAGGTGCGTCAAGCCGTGCGT
CTGGGGTCACGAGGCTTACGATTTAAGCCAGTAGTCGGGGACGACTGGTGCTTTCCAATATATGA
AACAGCATGGAGCCAATATATGAAACAGCATGGAGGGACCAAAGCTGAGCGGGTTTGGGTATTGA
CTGGGGTCCGGGTGGTAAGTGTTCCCTACATTACCTCTCACTACT
Found at i:1460 original size:23 final size:23
Alignment explanation
Indices: 1430--1475 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1420 CTGGTGCTTT
1430 CCAATATATGAAACAGCATGGAG
1 CCAATATATGAAACAGCATGGAG
1453 CCAATATATGAAACAGCATGGAG
1 CCAATATATGAAACAGCATGGAG
1476 GGACCAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (23 bp):
CCAATATATGAAACAGCATGGAG
Left flanking sequence: Indices 930 -- 1429
ATTCTCCCTAATAAGTGTAGAAATGCGTTGCTCCAAGTAATCATTGTACTGAGTAAGTGTAGAAA
CGTTTTGCTCCAAGTTAGCATTCTGCTGAGTAAGTGTAGAAACGTTTTGCACCAAGGTTTTCAAC
TGCTCATATTTTTCCTTCAGAATCATGACCATAGTCAACTCGTCATTCTCAAGGCATGTCATATA
AACCGGAGTCTCGTTCGGTTTGATTTGGCTGCTTTCATCGATTTCACTAGGAGTGGACATTTCGA
AAGTCGACAGTTGGGTCATGTCTTTCTGGGCGAATTTATGGCGCTTTAAATAGTGTGGTGACAAA
ATCATAATAAAAACACCCCCTTAACCGAAGGAGGTGTGTCGCGGAGGTCGCTTCCCTCACCCACC
CTGGAGTAGACGTGTGGCAAGTATCCCTTTTCGGCGAGGTGCGTCAAGCCGTGCGTCTGGGGTCA
CGAGGCTTACGATTTAAGCCAGTAGTCGGGGACGACTGGTGCTTT
Right flanking sequence: Indices 1476 -- 1975
GGACCAAAGCTGAGCGGGTTTGGGTATTGACTGGGGTCCGGGTGGTAAGTGTTCCCTACATTACC
TCTCACTACTCGGAATGTGAACAGCCATCCAACACAGTGCGTGACGGCTAGTTATTGCCGCAGCC
AGATCTGAAAAGATCTGTGTTTGCCGAGAAATGAAATTCCCCGAAAGGGGTTCCCAAAGGGACAT
CGCCTTTTTCACTATGATTATGGCCACTATAGCAAAGCAAATACATGTGCGTTTGATAAATTTAT
TATGCTTTGACTTTGCTATTTATTAGAGTATTGAAGGATCGAATATGTCGCGCAACGCAACCCTG
GTCGAGACCCCGCTGGAACAAAAACAGACAAACTAAGCAAAATGCCGCATGATAAGTCTATGAAA
AAAACTGGTTAGTTGATTTGTCCGCTAGACAGAGATAATGTTGAAGAATAGGGTCACCCAGGTCA
GTGGTTACCACATCATTAGTTTACTGGAGGTAGCCCTCGAGGGAT
Found at i:4951 original size:11 final size:11
Alignment explanation
Indices: 4935--4966 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
4925 CACACTACCA
4935 CAGCACCGACT
1 CAGCACCGACT
4946 CAGCACCGA--
1 CAGCACCGACT
4955 CAGCACCGACT
1 CAGCACCGACT
4966 C
1 C
4967 CACACCAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.28, C:0.47, G:0.19, T:0.06
Consensus pattern (11 bp):
CAGCACCGACT
Left flanking sequence: Indices 4435 -- 4934
GAACTACGAGCTGGTGCGGTTCAACCGGGCCGGCGAGATGACCGAGCGGTTGACGGAGGAGGCCG
GGATCGACACGAGCGGGATCGGGAGAGGAGGATCCTCGCGCACGCACGACAAGAAGGAGGAGGAC
GGAGGGGACGCACCACGGGAACACACCAACCCCGCACCCGGGCCCCGTGCCCAAAGCAGTGCCTC
CACCCGCCACGATGTCGACACCAACTTCGACTTGACCAAGGTGTTTGACAAACTCAACCTTGCCC
GGCTGGCGATGGAGGGGATGGACCAGAAGCAGAAGGAAAAGTACGCCAAGAGCGTGGTGGAGGAC
GTGCTCAATTTCATCTAGGTGCGAGCACCTTGCTACAGGTTAGTGTTTGAGATTAGCCATGCACC
TTGGGTGTTACTTCGAGCCCAAAGCTATCACAATGTTGCTGACGTTGTTACAGAACCCCCTCCTC
TACGCGTCTGTTTCAAATAACTTGGCTTGTGCAACCACACTACCA
Right flanking sequence: Indices 4967 -- 5466
CACACCAGCACAGCACCGACACCGGGTCACGCCATCCAAAAAACACAACCCTACCGTTCCCTTTC
TCAAATCCGTTAGGATCCTTCCACTCCTTCCACTCCTTCCCATCCACTGTAGTTTACCAACCTTC
CTACTAACCACATCCATTTATCCATGCATTCTATTACTGTCTATATATATGCACAAGGGTCTCCA
GGACCCGTCCCAGAACCTTACTCCACCTTGGCGTACTCAATCTTGTAGCCCGGCTCAAAGTACAC
CTCCTGGCAGTCCTCGCCGTCGACGCCGTTCTCGTAGATCATCACCCCAAAGTCGATGTGGTCGA
TCTTCTCGTCAATCACCACCATGGGTGCGTGCCAGGTGCCGGCACCGTAGGTGACACCCTGGTTG
CCGCGGCACACAAAAGCCTTCACCAGCTTGGGGTCAGGCAACTTCTGGTCCAGGTTAGGGTCCAG
CGAAGCCACAATCACCAAGTAGGCCTTCTTGTCCAGCTGCTCACC
Found at i:4959 original size:20 final size:22
Alignment explanation
Indices: 4924--4986 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 22
4914 GCTTGTGCAA
* *
4924 CCACACTACCACAGCACCGACT
1 CCACACCAGCACAGCACCGACT
4946 -CAGCACC-G-ACAGCACCGACT
1 CCA-CACCAGCACAGCACCGACT
4966 CCACACCAGCACAGCACCGAC
1 CCACACCAGCACAGCACCGAC
4987 ACCGGGTCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
20 16 0.46
21 5 0.14
22 14 0.40
ACGTcount: A:0.32, C:0.49, G:0.14, T:0.05
Consensus pattern (22 bp):
CCACACCAGCACAGCACCGACT
Left flanking sequence: Indices 4424 -- 4923
GCGAGCTACGTGAACTACGAGCTGGTGCGGTTCAACCGGGCCGGCGAGATGACCGAGCGGTTGAC
GGAGGAGGCCGGGATCGACACGAGCGGGATCGGGAGAGGAGGATCCTCGCGCACGCACGACAAGA
AGGAGGAGGACGGAGGGGACGCACCACGGGAACACACCAACCCCGCACCCGGGCCCCGTGCCCAA
AGCAGTGCCTCCACCCGCCACGATGTCGACACCAACTTCGACTTGACCAAGGTGTTTGACAAACT
CAACCTTGCCCGGCTGGCGATGGAGGGGATGGACCAGAAGCAGAAGGAAAAGTACGCCAAGAGCG
TGGTGGAGGACGTGCTCAATTTCATCTAGGTGCGAGCACCTTGCTACAGGTTAGTGTTTGAGATT
AGCCATGCACCTTGGGTGTTACTTCGAGCCCAAAGCTATCACAATGTTGCTGACGTTGTTACAGA
ACCCCCTCCTCTACGCGTCTGTTTCAAATAACTTGGCTTGTGCAA
Right flanking sequence: Indices 4987 -- 5486
ACCGGGTCACGCCATCCAAAAAACACAACCCTACCGTTCCCTTTCTCAAATCCGTTAGGATCCTT
CCACTCCTTCCACTCCTTCCCATCCACTGTAGTTTACCAACCTTCCTACTAACCACATCCATTTA
TCCATGCATTCTATTACTGTCTATATATATGCACAAGGGTCTCCAGGACCCGTCCCAGAACCTTA
CTCCACCTTGGCGTACTCAATCTTGTAGCCCGGCTCAAAGTACACCTCCTGGCAGTCCTCGCCGT
CGACGCCGTTCTCGTAGATCATCACCCCAAAGTCGATGTGGTCGATCTTCTCGTCAATCACCACC
ATGGGTGCGTGCCAGGTGCCGGCACCGTAGGTGACACCCTGGTTGCCGCGGCACACAAAAGCCTT
CACCAGCTTGGGGTCAGGCAACTTCTGGTCCAGGTTAGGGTCCAGCGAAGCCACAATCACCAAGT
AGGCCTTCTTGTCCAGCTGCTCACCCATGGGCACAAACGTCTGGG
Found at i:5061 original size:9 final size:9
Alignment explanation
Indices: 5047--5071 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
5037 TCCGTTAGGA
5047 TCCTTCCAC
1 TCCTTCCAC
5056 TCCTTCCAC
1 TCCTTCCAC
5065 TCCTTCC
1 TCCTTCC
5072 CATCCACTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.56, G:0.00, T:0.36
Consensus pattern (9 bp):
TCCTTCCAC
Left flanking sequence: Indices 4547 -- 5046
GACAAGAAGGAGGAGGACGGAGGGGACGCACCACGGGAACACACCAACCCCGCACCCGGGCCCCG
TGCCCAAAGCAGTGCCTCCACCCGCCACGATGTCGACACCAACTTCGACTTGACCAAGGTGTTTG
ACAAACTCAACCTTGCCCGGCTGGCGATGGAGGGGATGGACCAGAAGCAGAAGGAAAAGTACGCC
AAGAGCGTGGTGGAGGACGTGCTCAATTTCATCTAGGTGCGAGCACCTTGCTACAGGTTAGTGTT
TGAGATTAGCCATGCACCTTGGGTGTTACTTCGAGCCCAAAGCTATCACAATGTTGCTGACGTTG
TTACAGAACCCCCTCCTCTACGCGTCTGTTTCAAATAACTTGGCTTGTGCAACCACACTACCACA
GCACCGACTCAGCACCGACAGCACCGACTCCACACCAGCACAGCACCGACACCGGGTCACGCCAT
CCAAAAAACACAACCCTACCGTTCCCTTTCTCAAATCCGTTAGGA
Right flanking sequence: Indices 5072 -- 5571
CATCCACTGTAGTTTACCAACCTTCCTACTAACCACATCCATTTATCCATGCATTCTATTACTGT
CTATATATATGCACAAGGGTCTCCAGGACCCGTCCCAGAACCTTACTCCACCTTGGCGTACTCAA
TCTTGTAGCCCGGCTCAAAGTACACCTCCTGGCAGTCCTCGCCGTCGACGCCGTTCTCGTAGATC
ATCACCCCAAAGTCGATGTGGTCGATCTTCTCGTCAATCACCACCATGGGTGCGTGCCAGGTGCC
GGCACCGTAGGTGACACCCTGGTTGCCGCGGCACACAAAAGCCTTCACCAGCTTGGGGTCAGGCA
ACTTCTGGTCCAGGTTAGGGTCCAGCGAAGCCACAATCACCAAGTAGGCCTTCTTGTCCAGCTGC
TCACCCATGGGCACAAACGTCTGGGTGGAGAACGGGTGTCTCTCGAGCACAGTGCTCTTGTAGGA
CAGCGCCGACAGCTCGTGCCCAATCAAGTGCATCGGGGCCTTGCA
Found at i:7489 original size:12 final size:12
Alignment explanation
Indices: 7468--7505 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
7458 ATATAAGCAT
7468 TTGATAGAGATG
1 TTGATAGAGATG
*
7480 TTGGTAGAGATG
1 TTGATAGAGATG
*
7492 ATGATAGAGATG
1 TTGATAGAGATG
7504 TT
1 TT
7506 TCCCAGTGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (12 bp):
TTGATAGAGATG
Left flanking sequence: Indices 6968 -- 7467
GAACGTCGGTGGTCAACTTGGATTCAAGGGGCAACACTCGGGTATCGCGTAAGTCCGCCTGTTCC
CACCGGCTCGCGAGAATTTCCACAGTAATGGTGTCCATGGTTTAGGGGTGGTCGCTACAAACGGC
TGAAGCTCGTTATATATGTGCTTTCTTTGTGGTTCGACAATGTCGTGGTCCTATTCTGGCGGTGG
TCCCACCGTCGATAACGTCACGTGGAGGGTTGCTTTGAATTTAGTACCACCATGTTACTACCACC
TCATACGACGCAAAACAGGAGGCTACAGGGCACTGGAAACCAAGAATGCGATCCTTTTAGTTTGT
AGAGTGCAGTCGGCCTTACGGCTGGTCTAACTACTGGTTGATTTTTCGAAACTTTTTGCAGCCAG
GGCCAGACGTTTATTTCCGGCACACGGCATGACTACTGTAGTCGGCAAGGGACCAAGCAGGTAGG
AAAGGAGGTGTTTATGGGAAAAAAGATATAAGGGTATATAAGCAT
Right flanking sequence: Indices 7506 -- 8005
TCCCAGTGTCCCAATCTTCTGTGTAGATTGAATGTTGGAGTCAGCAATGGTCTGGAGATGTCGAT
CTTAGGCCTAAACCACACCTGAACACCTTGAAACAGGATCACGAAACCGACTAGTGTCAAGCTGG
TAGTTCGAATACAAGTTTGGGTCAGACGAAGGCAGTGAAAGCAGCCCCCTTGAGATACTTTTCAA
AAATTCTCAGTATATTCCACCTTTCAAACACTTGCCAATTTTCACCTTTTTCACCTTTTCACCGT
TTTCACCTTTTTCAATTTGGCCAGAGTCATTACCTGAATCTCTACCCCGCGTTACGCGTCTTGGT
CGCTTGTTTCCAGTTCCATCAAAGCCTTTCGATGGCCTTGAGACAATGGCGTCGATCGTTCGTAA
ATATGTGACAATTTCACCCCACCAGCCCTCGGGTATAACCGCGTACGACCCCCCTACATCCACGT
ACCAGCCGCTACACCCACCTCTTCGCCCGTCTTAAACCCGCCCAT
Found at i:7753 original size:9 final size:9
Alignment explanation
Indices: 7739--7779 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
7729 CACTTGCCAA
7739 TTTTCACCT
1 TTTTCACCT
7748 TTTTCACC-
1 TTTTCACCT
*
7756 TTTTCACCG
1 TTTTCACCT
7765 TTTTCACCT
1 TTTTCACCT
7774 TTTTCA
1 TTTTCA
7780 ATTTGGCCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 8 0.27
9 22 0.73
ACGTcount: A:0.12, C:0.32, G:0.02, T:0.54
Consensus pattern (9 bp):
TTTTCACCT
Left flanking sequence: Indices 7239 -- 7738
AAAACAGGAGGCTACAGGGCACTGGAAACCAAGAATGCGATCCTTTTAGTTTGTAGAGTGCAGTC
GGCCTTACGGCTGGTCTAACTACTGGTTGATTTTTCGAAACTTTTTGCAGCCAGGGCCAGACGTT
TATTTCCGGCACACGGCATGACTACTGTAGTCGGCAAGGGACCAAGCAGGTAGGAAAGGAGGTGT
TTATGGGAAAAAAGATATAAGGGTATATAAGCATTTGATAGAGATGTTGGTAGAGATGATGATAG
AGATGTTTCCCAGTGTCCCAATCTTCTGTGTAGATTGAATGTTGGAGTCAGCAATGGTCTGGAGA
TGTCGATCTTAGGCCTAAACCACACCTGAACACCTTGAAACAGGATCACGAAACCGACTAGTGTC
AAGCTGGTAGTTCGAATACAAGTTTGGGTCAGACGAAGGCAGTGAAAGCAGCCCCCTTGAGATAC
TTTTCAAAAATTCTCAGTATATTCCACCTTTCAAACACTTGCCAA
Right flanking sequence: Indices 7780 -- 8279
ATTTGGCCAGAGTCATTACCTGAATCTCTACCCCGCGTTACGCGTCTTGGTCGCTTGTTTCCAGT
TCCATCAAAGCCTTTCGATGGCCTTGAGACAATGGCGTCGATCGTTCGTAAATATGTGACAATTT
CACCCCACCAGCCCTCGGGTATAACCGCGTACGACCCCCCTACATCCACGTACCAGCCGCTACAC
CCACCTCTTCGCCCGTCTTAAACCCGCCCATCCCGCCCATCCCCGCCCCCCACCTCACCTTGGTC
CACCCGTTCCCACCCATCCCGATCGGGTAAGCGCACACCACCCGGGCGTGACCACAACACGGACG
CACCACCCGTCGTCTAATCCCCCCTTTTGCCACCCGAAACGCAGATAGATAGTCCGCCATCCCCC
CGGCCTCCCCACTGAGCCCGTCCACGCCCATGGCGCCCGGTCTCCTCACCAGGGATCCACCCCTG
CACACAACCCATCGCATACATACCACGCCACTGGATCAAACAACC
Found at i:7761 original size:17 final size:17
Alignment explanation
Indices: 7739--7776 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7729 CACTTGCCAA
*
7739 TTTTCACCTTTTTCACC
1 TTTTCACCGTTTTCACC
7756 TTTTCACCGTTTTCACC
1 TTTTCACCGTTTTCACC
7773 TTTT
1 TTTT
7777 TCAATTTGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.32, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTCACCGTTTTCACC
Left flanking sequence: Indices 7239 -- 7738
AAAACAGGAGGCTACAGGGCACTGGAAACCAAGAATGCGATCCTTTTAGTTTGTAGAGTGCAGTC
GGCCTTACGGCTGGTCTAACTACTGGTTGATTTTTCGAAACTTTTTGCAGCCAGGGCCAGACGTT
TATTTCCGGCACACGGCATGACTACTGTAGTCGGCAAGGGACCAAGCAGGTAGGAAAGGAGGTGT
TTATGGGAAAAAAGATATAAGGGTATATAAGCATTTGATAGAGATGTTGGTAGAGATGATGATAG
AGATGTTTCCCAGTGTCCCAATCTTCTGTGTAGATTGAATGTTGGAGTCAGCAATGGTCTGGAGA
TGTCGATCTTAGGCCTAAACCACACCTGAACACCTTGAAACAGGATCACGAAACCGACTAGTGTC
AAGCTGGTAGTTCGAATACAAGTTTGGGTCAGACGAAGGCAGTGAAAGCAGCCCCCTTGAGATAC
TTTTCAAAAATTCTCAGTATATTCCACCTTTCAAACACTTGCCAA
Right flanking sequence: Indices 7777 -- 8276
TCAATTTGGCCAGAGTCATTACCTGAATCTCTACCCCGCGTTACGCGTCTTGGTCGCTTGTTTCC
AGTTCCATCAAAGCCTTTCGATGGCCTTGAGACAATGGCGTCGATCGTTCGTAAATATGTGACAA
TTTCACCCCACCAGCCCTCGGGTATAACCGCGTACGACCCCCCTACATCCACGTACCAGCCGCTA
CACCCACCTCTTCGCCCGTCTTAAACCCGCCCATCCCGCCCATCCCCGCCCCCCACCTCACCTTG
GTCCACCCGTTCCCACCCATCCCGATCGGGTAAGCGCACACCACCCGGGCGTGACCACAACACGG
ACGCACCACCCGTCGTCTAATCCCCCCTTTTGCCACCCGAAACGCAGATAGATAGTCCGCCATCC
CCCCGGCCTCCCCACTGAGCCCGTCCACGCCCATGGCGCCCGGTCTCCTCACCAGGGATCCACCC
CTGCACACAACCCATCGCATACATACCACGCCACTGGATCAAACA
Found at i:10943 original size:20 final size:20
Alignment explanation
Indices: 10918--10960 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
10908 AAAGAATGGA
*
10918 GGTGGTTGAGGGTGGTG-GGT
1 GGTGGTT-AAGGTGGTGTGGT
10938 GGTGGTTAAGGTGGTGTGGT
1 GGTGGTTAAGGTGGTGTGGT
10958 GGT
1 GGT
10961 TAAGGTGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.07, C:0.00, G:0.60, T:0.33
Consensus pattern (20 bp):
GGTGGTTAAGGTGGTGTGGT
Left flanking sequence: Indices 10418 -- 10917
CTCTACTCGTCGTCGAAGATCCTCGGCGCCGGCGCGGTGGTGTCGAAGCTCGTGCAGGCGTCGTC
GATGATGCTGGCGCGCACCGTCAAGTACGTGGCGGTGCCGTTGGCGATCGGGGCGGTGGCGGTGA
CGCTGTGGTACCTCGTGAGCGACATTCCCGCGGCGTACCCGCGCAACGTCGCCCGCAAGCTCAAG
CGGCAGATCCACTCGATGGAGTACCCGCACGCCAACGCCACGAGAACCGCGAAGGAGGTGCGCGA
GGTGTTGAACTACCCGGCCCGCCAGGTGCACGCCAACTTCCAGACGAGCTTGGACAAGCGCAAGG
CGCAAAAAGAAAAGTTGGAGAAGGAGATTGCGGATGCCAACACCAGTTACGCTTACTTCTCGGGG
CTCCACCACAAGATTGCTGCCGAGAAGACCCAGTTGCAGGGGATCGAGTTGGAGAGAGTCAACAC
CGTGGATTAATGTATATAGTAATCATGATGATATGAAAGAATGGA
Right flanking sequence: Indices 10961 -- 11460
TAAGGTGGTATAAGGGGGTTGAAGGTGTTATCTGGGGGTTGAAGGTGGTTGACGTGGATCAGGGG
TTATTGGGGGTATCAGGTGGTTAGGTGGTATCTGAGGGTTAGCGGTGGTCTGGGGGTTGACAGTG
GTATCAGGAGGTTTTCGGTGGTATCAGGTGGTTGACGGTGGATCAGGTGGTTACCGGTGTTGTGT
TTGTGTCACCGCGTGCCTTCGGTGCAACTTTGAAGGTTTCATCGCGGGTTGTGGTTTGTGACGTG
GTTGCAAAATACCCTTTTGGGAAGCGAAGTGACTTTGGTCGGTGAAGAGGAGAGGTAGCGAGAAA
GTAAGCTGAGAAGGGTTTGTTGTGAACATTGGAGAATGCAGGTGGCAGTGTATTCATAAGTGTAG
ATTTGAGACCTTCAGAATGCTGAACTTTTTAAGAAAAGTTGCGTAGCAAATAGAAGTGGAACTGA
GTGGAAAATGGAGGGGTGTTACGAGGTCACCATTTATTTGCAACC
Found at i:10952 original size:9 final size:9
Alignment explanation
Indices: 10938--10987 Score: 50
Period size: 10 Copynumber: 5.4 Consensus size: 9
10928 GGTGGTGGGT
10938 GGTGGTTAA
1 GGTGGTTAA
10947 GGTGGTGT--
1 GGTGGT-TAA
10955 GGTGGTTAA
1 GGTGGTTAA
10964 GGTGGTATAA
1 GGTGGT-TAA
*
10974 GGGGGTTGAA
1 GGTGGTT-AA
10984 GGTG
1 GGTG
10988 TTATCTGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
7 1 0.03
8 6 0.18
9 13 0.38
10 14 0.41
ACGTcount: A:0.18, C:0.00, G:0.52, T:0.30
Consensus pattern (9 bp):
GGTGGTTAA
Left flanking sequence: Indices 10438 -- 10937
CCTCGGCGCCGGCGCGGTGGTGTCGAAGCTCGTGCAGGCGTCGTCGATGATGCTGGCGCGCACCG
TCAAGTACGTGGCGGTGCCGTTGGCGATCGGGGCGGTGGCGGTGACGCTGTGGTACCTCGTGAGC
GACATTCCCGCGGCGTACCCGCGCAACGTCGCCCGCAAGCTCAAGCGGCAGATCCACTCGATGGA
GTACCCGCACGCCAACGCCACGAGAACCGCGAAGGAGGTGCGCGAGGTGTTGAACTACCCGGCCC
GCCAGGTGCACGCCAACTTCCAGACGAGCTTGGACAAGCGCAAGGCGCAAAAAGAAAAGTTGGAG
AAGGAGATTGCGGATGCCAACACCAGTTACGCTTACTTCTCGGGGCTCCACCACAAGATTGCTGC
CGAGAAGACCCAGTTGCAGGGGATCGAGTTGGAGAGAGTCAACACCGTGGATTAATGTATATAGT
AATCATGATGATATGAAAGAATGGAGGTGGTTGAGGGTGGTGGGT
Right flanking sequence: Indices 10988 -- 11487
TTATCTGGGGGTTGAAGGTGGTTGACGTGGATCAGGGGTTATTGGGGGTATCAGGTGGTTAGGTG
GTATCTGAGGGTTAGCGGTGGTCTGGGGGTTGACAGTGGTATCAGGAGGTTTTCGGTGGTATCAG
GTGGTTGACGGTGGATCAGGTGGTTACCGGTGTTGTGTTTGTGTCACCGCGTGCCTTCGGTGCAA
CTTTGAAGGTTTCATCGCGGGTTGTGGTTTGTGACGTGGTTGCAAAATACCCTTTTGGGAAGCGA
AGTGACTTTGGTCGGTGAAGAGGAGAGGTAGCGAGAAAGTAAGCTGAGAAGGGTTTGTTGTGAAC
ATTGGAGAATGCAGGTGGCAGTGTATTCATAAGTGTAGATTTGAGACCTTCAGAATGCTGAACTT
TTTAAGAAAAGTTGCGTAGCAAATAGAAGTGGAACTGAGTGGAAAATGGAGGGGTGTTACGAGGT
CACCATTTATTTGCAACCCCGTGGGTTGCATTCCAAAAGCATGGA
Found at i:10956 original size:17 final size:17
Alignment explanation
Indices: 10931--10969 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
10921 GGTTGAGGGT
10931 GGTGG-GTGGTGGTTAA
1 GGTGGTGTGGTGGTTAA
10947 GGTGGTGTGGTGGTTAA
1 GGTGGTGTGGTGGTTAA
10964 GGTGGT
1 GGTGGT
10970 ATAAGGGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.10, C:0.00, G:0.56, T:0.33
Consensus pattern (17 bp):
GGTGGTGTGGTGGTTAA
Left flanking sequence: Indices 10431 -- 10930
CGAAGATCCTCGGCGCCGGCGCGGTGGTGTCGAAGCTCGTGCAGGCGTCGTCGATGATGCTGGCG
CGCACCGTCAAGTACGTGGCGGTGCCGTTGGCGATCGGGGCGGTGGCGGTGACGCTGTGGTACCT
CGTGAGCGACATTCCCGCGGCGTACCCGCGCAACGTCGCCCGCAAGCTCAAGCGGCAGATCCACT
CGATGGAGTACCCGCACGCCAACGCCACGAGAACCGCGAAGGAGGTGCGCGAGGTGTTGAACTAC
CCGGCCCGCCAGGTGCACGCCAACTTCCAGACGAGCTTGGACAAGCGCAAGGCGCAAAAAGAAAA
GTTGGAGAAGGAGATTGCGGATGCCAACACCAGTTACGCTTACTTCTCGGGGCTCCACCACAAGA
TTGCTGCCGAGAAGACCCAGTTGCAGGGGATCGAGTTGGAGAGAGTCAACACCGTGGATTAATGT
ATATAGTAATCATGATGATATGAAAGAATGGAGGTGGTTGAGGGT
Right flanking sequence: Indices 10970 -- 11469
ATAAGGGGGTTGAAGGTGTTATCTGGGGGTTGAAGGTGGTTGACGTGGATCAGGGGTTATTGGGG
GTATCAGGTGGTTAGGTGGTATCTGAGGGTTAGCGGTGGTCTGGGGGTTGACAGTGGTATCAGGA
GGTTTTCGGTGGTATCAGGTGGTTGACGGTGGATCAGGTGGTTACCGGTGTTGTGTTTGTGTCAC
CGCGTGCCTTCGGTGCAACTTTGAAGGTTTCATCGCGGGTTGTGGTTTGTGACGTGGTTGCAAAA
TACCCTTTTGGGAAGCGAAGTGACTTTGGTCGGTGAAGAGGAGAGGTAGCGAGAAAGTAAGCTGA
GAAGGGTTTGTTGTGAACATTGGAGAATGCAGGTGGCAGTGTATTCATAAGTGTAGATTTGAGAC
CTTCAGAATGCTGAACTTTTTAAGAAAAGTTGCGTAGCAAATAGAAGTGGAACTGAGTGGAAAAT
GGAGGGGTGTTACGAGGTCACCATTTATTTGCAACCCCGTGGGTT
Found at i:10987 original size:20 final size:20
Alignment explanation
Indices: 10958--11009 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
10948 GTGGTGTGGT
10958 GGTT-AAGGTGGTATAAGGG
1 GGTTGAAGGTGGTATAAGGG
* **
10977 GGTTGAAGGTGTTATCTGGG
1 GGTTGAAGGTGGTATAAGGG
10997 GGTTGAAGGTGGT
1 GGTTGAAGGTGGT
11010 TGACGTGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.19, C:0.02, G:0.48, T:0.31
Consensus pattern (20 bp):
GGTTGAAGGTGGTATAAGGG
Left flanking sequence: Indices 10458 -- 10957
TGTCGAAGCTCGTGCAGGCGTCGTCGATGATGCTGGCGCGCACCGTCAAGTACGTGGCGGTGCCG
TTGGCGATCGGGGCGGTGGCGGTGACGCTGTGGTACCTCGTGAGCGACATTCCCGCGGCGTACCC
GCGCAACGTCGCCCGCAAGCTCAAGCGGCAGATCCACTCGATGGAGTACCCGCACGCCAACGCCA
CGAGAACCGCGAAGGAGGTGCGCGAGGTGTTGAACTACCCGGCCCGCCAGGTGCACGCCAACTTC
CAGACGAGCTTGGACAAGCGCAAGGCGCAAAAAGAAAAGTTGGAGAAGGAGATTGCGGATGCCAA
CACCAGTTACGCTTACTTCTCGGGGCTCCACCACAAGATTGCTGCCGAGAAGACCCAGTTGCAGG
GGATCGAGTTGGAGAGAGTCAACACCGTGGATTAATGTATATAGTAATCATGATGATATGAAAGA
ATGGAGGTGGTTGAGGGTGGTGGGTGGTGGTTAAGGTGGTGTGGT
Right flanking sequence: Indices 11010 -- 11509
TGACGTGGATCAGGGGTTATTGGGGGTATCAGGTGGTTAGGTGGTATCTGAGGGTTAGCGGTGGT
CTGGGGGTTGACAGTGGTATCAGGAGGTTTTCGGTGGTATCAGGTGGTTGACGGTGGATCAGGTG
GTTACCGGTGTTGTGTTTGTGTCACCGCGTGCCTTCGGTGCAACTTTGAAGGTTTCATCGCGGGT
TGTGGTTTGTGACGTGGTTGCAAAATACCCTTTTGGGAAGCGAAGTGACTTTGGTCGGTGAAGAG
GAGAGGTAGCGAGAAAGTAAGCTGAGAAGGGTTTGTTGTGAACATTGGAGAATGCAGGTGGCAGT
GTATTCATAAGTGTAGATTTGAGACCTTCAGAATGCTGAACTTTTTAAGAAAAGTTGCGTAGCAA
ATAGAAGTGGAACTGAGTGGAAAATGGAGGGGTGTTACGAGGTCACCATTTATTTGCAACCCCGT
GGGTTGCATTCCAAAAGCATGGATTTCTTTACTGAGCACCACTTC
Found at i:11149 original size:19 final size:20
Alignment explanation
Indices: 11003--11142 Score: 95
Period size: 20 Copynumber: 7.4 Consensus size: 20
10993 TGGGGGTTGA
11003 AGGTGGTTGAC-GTGG-ATC
1 AGGTGGTTGACGGTGGTATC
* *
11021 AGG-GGTT-ATTGGGGGTATC
1 AGGTGGTTGA-CGGTGGTATC
11040 AGGTGGTT-A-GGTGGTATC
1 AGGTGGTTGACGGTGGTATC
*
11058 TGAG-GGTT-AGCGGTGG--TC
1 AG-GTGGTTGA-CGGTGGTATC
* * *
11076 TGGGGGTTGACAGTGGTATC
1 AGGTGGTTGACGGTGGTATC
* **
11096 AGGAGGTTTTCGGTGGTATC
1 AGGTGGTTGACGGTGGTATC
11116 AGGTGGTTGACGGTGG-ATC
1 AGGTGGTTGACGGTGGTATC
11135 AGGTGGTT
1 AGGTGGTT
11143 ACCGGTGTTG
Statistics
Matches: 98, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
16 1 0.01
17 5 0.05
18 33 0.34
19 19 0.19
20 40 0.41
ACGTcount: A:0.15, C:0.09, G:0.46, T:0.31
Consensus pattern (20 bp):
AGGTGGTTGACGGTGGTATC
Left flanking sequence: Indices 10503 -- 11002
TCAAGTACGTGGCGGTGCCGTTGGCGATCGGGGCGGTGGCGGTGACGCTGTGGTACCTCGTGAGC
GACATTCCCGCGGCGTACCCGCGCAACGTCGCCCGCAAGCTCAAGCGGCAGATCCACTCGATGGA
GTACCCGCACGCCAACGCCACGAGAACCGCGAAGGAGGTGCGCGAGGTGTTGAACTACCCGGCCC
GCCAGGTGCACGCCAACTTCCAGACGAGCTTGGACAAGCGCAAGGCGCAAAAAGAAAAGTTGGAG
AAGGAGATTGCGGATGCCAACACCAGTTACGCTTACTTCTCGGGGCTCCACCACAAGATTGCTGC
CGAGAAGACCCAGTTGCAGGGGATCGAGTTGGAGAGAGTCAACACCGTGGATTAATGTATATAGT
AATCATGATGATATGAAAGAATGGAGGTGGTTGAGGGTGGTGGGTGGTGGTTAAGGTGGTGTGGT
GGTTAAGGTGGTATAAGGGGGTTGAAGGTGTTATCTGGGGGTTGA
Right flanking sequence: Indices 11143 -- 11642
ACCGGTGTTGTGTTTGTGTCACCGCGTGCCTTCGGTGCAACTTTGAAGGTTTCATCGCGGGTTGT
GGTTTGTGACGTGGTTGCAAAATACCCTTTTGGGAAGCGAAGTGACTTTGGTCGGTGAAGAGGAG
AGGTAGCGAGAAAGTAAGCTGAGAAGGGTTTGTTGTGAACATTGGAGAATGCAGGTGGCAGTGTA
TTCATAAGTGTAGATTTGAGACCTTCAGAATGCTGAACTTTTTAAGAAAAGTTGCGTAGCAAATA
GAAGTGGAACTGAGTGGAAAATGGAGGGGTGTTACGAGGTCACCATTTATTTGCAACCCCGTGGG
TTGCATTCCAAAAGCATGGATTTCTTTACTGAGCACCACTTCAGTCCGTCTCGGTCAAGTACAAC
GCTCCCTTTTTGCCCGCACAATGGTAACGGCGAATATGCGGGCTAAAACGAGGGGAAGTTGGAGC
GTTTTGAGCGATTGGCACGCCTTTCGCCGTCGGATTATCCCGAAG
Found at i:11946 original size:11 final size:11
Alignment explanation
Indices: 11930--11985 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
11920 CCAAACTCAC
*
11930 CTCTCTTGCTT
1 CTCTCTTTCTT
*
11941 CTCTCTCTCTT
1 CTCTCTTTCTT
*
11952 TTCTCTTTCTT
1 CTCTCTTTCTT
*
11963 TTCTCTTTCTT
1 CTCTCTTTCTT
11974 CTCTCTTTCTT
1 CTCTCTTTCTT
11985 C
1 C
11986 CGTGTATTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 40 1.00
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (11 bp):
CTCTCTTTCTT
Left flanking sequence: Indices 11430 -- 11929
GGTGTTACGAGGTCACCATTTATTTGCAACCCCGTGGGTTGCATTCCAAAAGCATGGATTTCTTT
ACTGAGCACCACTTCAGTCCGTCTCGGTCAAGTACAACGCTCCCTTTTTGCCCGCACAATGGTAA
CGGCGAATATGCGGGCTAAAACGAGGGGAAGTTGGAGCGTTTTGAGCGATTGGCACGCCTTTCGC
CGTCGGATTATCCCGAAGAGTCCACTAAAAATCTGAAAGAATACCCCCGAATTAACTCAACCGTA
GCTCACGGGGACTTCTTTCAAAAGTGCCTTGTAACCGCTTCCTTCGTCCCTCCCTTGCCGCTACC
GGTTATTTTTTATGCACGTCAAACACAAAATCAAGGAATAACCCGATAATTGAGCCCACAGCGGG
GTAGACCAGAATAATGTCTGAGACCCCTCTGAAACCCCTCTTGTCTCGGACTTCTCCTCGCTGCG
GCCCCCAACGGCCCGAAACCGGTGGCATGCAGGCCCCAAACTCAC
Right flanking sequence: Indices 11986 -- 12485
CGTGTATTACCGATTACCTGAATTATATTCTATGCTCTAATCAACGGCTTGGCAACGTTCTCCGG
GCGTAGATCACGTAGACCGTCACAACCAACATCACGAAACAGAGCGCAAAACTGCCCTGGAACAC
CGGCTTGTAGCACCCGTTGCCCAACTCGCACACCCCGTCCACGGCGTGGGCGTCGTAGATCCAGC
CAAACACCTTGTTGAGCACGAAAAGCGTGAAGAACGGGCCCACACAGGTAAGGCCCCAGGTGGTC
GAGAACGTCCGCGTGCCAAACTGGTCGGCAATCACCGCCGGGTAGGTGCCAAACACGAGCCCGTA
ACTGCACCCAATCAACGTCAGCGCCACCGAAAGCCAGAACGGGTCGGCCACGTTGACCGCCAGGA
TCAACTGGCCCAGCGCCAACGTGAAGCACGTGAGCACCGACAACCAGAGCCGCGAGTACCCGTGG
GTCTTGTGGATGTAGTCGCTCAAAAACCCCGCGAGCACCCGCCCG
Found at i:14421 original size:16 final size:16
Alignment explanation
Indices: 14400--14443 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
14390 ATGACGGAAC
14400 ACCCAAACACCTATTT
1 ACCCAAACACCTATTT
14416 ACCCAAACACCTATTT
1 ACCCAAACACCTATTT
14432 ACCCAAACACCT
1 ACCCAAACACCT
14444 GTTCATCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (16 bp):
ACCCAAACACCTATTT
Left flanking sequence: Indices 13900 -- 14399
GCGAGGTAGTGACGAGCTAGTGGCGAGCTAGTCTCGGAAAACTGGTAGGCGATGCCGAGGGGGCG
GACACAGGCGTAATTGTCGGTGGGCTGATGGCGGTCCCGTGGTTACTACGTGGTCGCGTGGGTGG
TGGTTCCGCATTGAGTAGTGCTACCGAAGCACGTGAGGGAGACGAGTCAATGTCGTGACACGATG
GCTGGGTTGGAGGCTGTGGGATGGCCCCGGGGAATGTGGGGTTGCCAAGTAACGAGATTGATCGA
GACATACGTTAGATGGGGCTGGTTGGTGGTGGTGTGCATATAGACGGGAGGAGGGTAATCAAGAG
ACTAACAATCAAGTGACTGGTAATCAGGGGACTAGTTTTGGGTGATCTGAGCTGCTTATGGCTCG
TGGCGTGCTCAACAAGCTGGTGGTTTGGTCAGATCATTGTGCTACCTGGTGTTTTCCCAATTTTT
CACCAGTCTAATACTGCTAAGATATGACAGCCAAGATGACGGAAC
Right flanking sequence: Indices 14444 -- 14943
GTTCATCCATACCCAACGCTGCCAACAACTGGTGCTCTTACAAACTACAATCACCTCCCCCATTG
ACACGCTACCTCGTCGCTCCACCTCAAACCCTTCCACCCCACCGTTCCCTTGCAGCAAATTTTCC
GTGCGACAGTATACCAGACTCGACCATACCGACCAGACCATACGACACCTCATGACGAGGCTTGA
CAACAGCGAGTTCCTTTCCCAGGTCGGGTCGCTTTTGGCCGATAACAACGGGAAGTCCCTGGTGT
ACCTCACCCAGAAACGGCTCGTGGCCGAGGTCGAGCCCAGCACCCACCCGCTCGGCGACTTGGCG
CTGAACGTGGTCAAGGACGAGCCCCTGGCTCCGGAGAACACCACCACGTACCCGGTGCTTGTGCG
GGTGACGATGAACGGGACCAAGCGCGGCGACAAACTGGGCAAAAAGAAGCTTTCGACCGTGGTCG
AGGCTCCCCAGATGGAAGAGTTCTGGGCCACCTACATCGGTGTGC
Found at i:15186 original size:24 final size:23
Alignment explanation
Indices: 15133--15354 Score: 103
Period size: 24 Copynumber: 9.7 Consensus size: 23
15123 ATAAAGTTGG
15133 CCATGGAATGGACTGG-CCTAGA
1 CCATGGAATGGACTGGCCCTAGA
*
15155 CCATGGAATGG-CTGGCCCAGTATA
1 CCATGGAATGGACTGGCCC--TAGA
*
15179 CCATGGAATGGCCTGGCCCGATAGA
1 CCATGGAATGGACTGGCCC--TAGA
*
15204 TCATGGAAT----TGG-CCTAGA
1 CCATGGAATGGACTGGCCCTAGA
*
15222 CCAT---ATGGACTGGCCCAGGAGA
1 CCATGGAATGGACTGGCCC--TAGA
*
15244 CCATGG-ATGGGCTGGCCCAGTAGA
1 CCATGGAATGGACTGGCCC--TAGA
* * *
15268 CCATGGATTGG-CTAGCCCAGTAAA
1 CCATGGAATGGACTGGCCC--TAGA
* **
15292 CCATGGAATGGGCTGG-TGTAGA
1 CCATGGAATGGACTGGCCCTAGA
* *
15314 CCATAGAATAGG-CTGGCCCAGTAAA
1 CCATGGAAT-GGACTGGCCC--TAGA
*
15339 CCATGGAATGGGCTGG
1 CCATGGAATGGACTGG
15355 TCTAGACTCT
Statistics
Matches: 158, Mismatches: 22, Indels: 37
0.73 0.10 0.17
Matches are distributed among these distances:
15 2 0.01
18 7 0.04
19 3 0.02
20 4 0.03
21 7 0.04
22 35 0.22
23 2 0.01
24 59 0.37
25 39 0.25
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (23 bp):
CCATGGAATGGACTGGCCCTAGA
Left flanking sequence: Indices 14633 -- 15132
GCTTGACAACAGCGAGTTCCTTTCCCAGGTCGGGTCGCTTTTGGCCGATAACAACGGGAAGTCCC
TGGTGTACCTCACCCAGAAACGGCTCGTGGCCGAGGTCGAGCCCAGCACCCACCCGCTCGGCGAC
TTGGCGCTGAACGTGGTCAAGGACGAGCCCCTGGCTCCGGAGAACACCACCACGTACCCGGTGCT
TGTGCGGGTGACGATGAACGGGACCAAGCGCGGCGACAAACTGGGCAAAAAGAAGCTTTCGACCG
TGGTCGAGGCTCCCCAGATGGAAGAGTTCTGGGCCACCTACATCGGTGTGCTTCGAGACGGCATG
GTGGGGTTGAAACAGACCCAGAAGAAGAAGAAGAAGGAGAACAAAGTGACGAAGTAGGGACGAGG
GGGACTCTAGCCCCAGGCTGGGTTGGCATCGACACATAACTAATAAATCATTAACGTTTCATTGA
CTCAGAACCACGCTGGGTGGTGGATACGTAGGTGTATAAAGTTGG
Right flanking sequence: Indices 15355 -- 15854
TCTAGACTCTTCTCATCTGTAGGCGCGTCAACAACTCGACGCAACAAGGCGGGGACCAAACTATG
CCTATTGGGTCTGTTCCCGCGTGACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCATGTTTGT
TTTGGTTAGGTCGTGACCGACCGATAGACGAGCACTCGAAGGAATGCGGTTACCGAGAATGCCAT
TCGTAAATGCACCCGTCGTAATCGCCATAAATGCACCCGTCGTAATCGCCCGTCGTAAACGCCGT
AATGCATTAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTTACTCCTGTTCGACCA
TCAACATGCCCAGCGGGTAGATGGCCGGCACCTCGCTGATGGCCTCGTCGCGGTGCTCGTTCAAC
AGGACGCGTGGCGGGACCGCCAGCACCAACGTGAACCCGTAGTGCATCGTGAAGTTGTGGAACTT
GCTGGTGAACTGCGTCTCGCTCATCTCCAGCGTGGCCGTGCCAAG
Found at i:15208 original size:25 final size:24
Alignment explanation
Indices: 15133--15218 Score: 97
Period size: 25 Copynumber: 3.6 Consensus size: 24
15123 ATAAAGTTGG
*
15133 CCATGGAATGGACTGG-CC-TAGA
1 CCATGGAATGGCCTGGCCCATAGA
*
15155 CCATGGAATGG-CTGGCCCAGTATA
1 CCATGGAATGGCCTGGCCCA-TAGA
15179 CCATGGAATGGCCTGGCCCGATAGA
1 CCATGGAATGGCCTGGCCC-ATAGA
*
15204 TCATGGAATTGGCCT
1 CCATGGAA-TGGCCT
15219 AGACCATATG
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
21 4 0.07
22 13 0.24
24 14 0.25
25 17 0.31
26 7 0.13
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.21
Consensus pattern (24 bp):
CCATGGAATGGCCTGGCCCATAGA
Left flanking sequence: Indices 14633 -- 15132
GCTTGACAACAGCGAGTTCCTTTCCCAGGTCGGGTCGCTTTTGGCCGATAACAACGGGAAGTCCC
TGGTGTACCTCACCCAGAAACGGCTCGTGGCCGAGGTCGAGCCCAGCACCCACCCGCTCGGCGAC
TTGGCGCTGAACGTGGTCAAGGACGAGCCCCTGGCTCCGGAGAACACCACCACGTACCCGGTGCT
TGTGCGGGTGACGATGAACGGGACCAAGCGCGGCGACAAACTGGGCAAAAAGAAGCTTTCGACCG
TGGTCGAGGCTCCCCAGATGGAAGAGTTCTGGGCCACCTACATCGGTGTGCTTCGAGACGGCATG
GTGGGGTTGAAACAGACCCAGAAGAAGAAGAAGAAGGAGAACAAAGTGACGAAGTAGGGACGAGG
GGGACTCTAGCCCCAGGCTGGGTTGGCATCGACACATAACTAATAAATCATTAACGTTTCATTGA
CTCAGAACCACGCTGGGTGGTGGATACGTAGGTGTATAAAGTTGG
Right flanking sequence: Indices 15219 -- 15718
AGACCATATGGACTGGCCCAGGAGACCATGGATGGGCTGGCCCAGTAGACCATGGATTGGCTAGC
CCAGTAAACCATGGAATGGGCTGGTGTAGACCATAGAATAGGCTGGCCCAGTAAACCATGGAATG
GGCTGGTCTAGACTCTTCTCATCTGTAGGCGCGTCAACAACTCGACGCAACAAGGCGGGGACCAA
ACTATGCCTATTGGGTCTGTTCCCGCGTGACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCAT
GTTTGTTTTGGTTAGGTCGTGACCGACCGATAGACGAGCACTCGAAGGAATGCGGTTACCGAGAA
TGCCATTCGTAAATGCACCCGTCGTAATCGCCATAAATGCACCCGTCGTAATCGCCCGTCGTAAA
CGCCGTAATGCATTAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTTACTCCTGTT
CGACCATCAACATGCCCAGCGGGTAGATGGCCGGCACCTCGCTGA
Found at i:15316 original size:22 final size:22
Alignment explanation
Indices: 15291--15361 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
15281 AGCCCAGTAA
15291 ACCATGGAATGGGCTGGTGTAG
1 ACCATGGAATGGGCTGGTGTAG
* * * *
15313 ACCATAGAATAGGCTGGCCCAGTAA
1 ACCATGGAATGGGCTGG---TGTAG
*
15338 ACCATGGAATGGGCTGGTCTAG
1 ACCATGGAATGGGCTGGTGTAG
15360 AC
1 AC
15362 TCTTCTCATC
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
22 19 0.51
25 18 0.49
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (22 bp):
ACCATGGAATGGGCTGGTGTAG
Left flanking sequence: Indices 14791 -- 15290
CCCTGGCTCCGGAGAACACCACCACGTACCCGGTGCTTGTGCGGGTGACGATGAACGGGACCAAG
CGCGGCGACAAACTGGGCAAAAAGAAGCTTTCGACCGTGGTCGAGGCTCCCCAGATGGAAGAGTT
CTGGGCCACCTACATCGGTGTGCTTCGAGACGGCATGGTGGGGTTGAAACAGACCCAGAAGAAGA
AGAAGAAGGAGAACAAAGTGACGAAGTAGGGACGAGGGGGACTCTAGCCCCAGGCTGGGTTGGCA
TCGACACATAACTAATAAATCATTAACGTTTCATTGACTCAGAACCACGCTGGGTGGTGGATACG
TAGGTGTATAAAGTTGGCCATGGAATGGACTGGCCTAGACCATGGAATGGCTGGCCCAGTATACC
ATGGAATGGCCTGGCCCGATAGATCATGGAATTGGCCTAGACCATATGGACTGGCCCAGGAGACC
ATGGATGGGCTGGCCCAGTAGACCATGGATTGGCTAGCCCAGTAA
Right flanking sequence: Indices 15362 -- 15861
TCTTCTCATCTGTAGGCGCGTCAACAACTCGACGCAACAAGGCGGGGACCAAACTATGCCTATTG
GGTCTGTTCCCGCGTGACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCATGTTTGTTTTGGTT
AGGTCGTGACCGACCGATAGACGAGCACTCGAAGGAATGCGGTTACCGAGAATGCCATTCGTAAA
TGCACCCGTCGTAATCGCCATAAATGCACCCGTCGTAATCGCCCGTCGTAAACGCCGTAATGCAT
TAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTTACTCCTGTTCGACCATCAACAT
GCCCAGCGGGTAGATGGCCGGCACCTCGCTGATGGCCTCGTCGCGGTGCTCGTTCAACAGGACGC
GTGGCGGGACCGCCAGCACCAACGTGAACCCGTAGTGCATCGTGAAGTTGTGGAACTTGCTGGTG
AACTGCGTCTCGCTCATCTCCAGCGTGGCCGTGCCAAGCAAGCCC
Found at i:15337 original size:47 final size:46
Alignment explanation
Indices: 15231--15361 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 46
15221 ACCATATGGA
* * * * *
15231 CTGGCCCAGGAGACCATGG-ATGGGCTGGCCCAGTAGACCATGGATTGG
1 CTGGCCCAGTAAACCATGGAATGGGCTGG---TGTAGACCATGAATAGG
*
15279 CTAGCCCAGTAAACCATGGAATGGGCTGGTGTAGACCATAGAATAGG
1 CTGGCCCAGTAAACCATGGAATGGGCTGGTGTAGACCAT-GAATAGG
*
15326 CTGGCCCAGTAAACCATGGAATGGGCTGGTCTAGAC
1 CTGGCCCAGTAAACCATGGAATGGGCTGGTGTAGAC
15362 TCTTCTCATC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 9 0.12
47 39 0.53
48 16 0.22
49 9 0.12
ACGTcount: A:0.26, C:0.23, G:0.33, T:0.18
Consensus pattern (46 bp):
CTGGCCCAGTAAACCATGGAATGGGCTGGTGTAGACCATGAATAGG
Left flanking sequence: Indices 14731 -- 15230
AGGTCGAGCCCAGCACCCACCCGCTCGGCGACTTGGCGCTGAACGTGGTCAAGGACGAGCCCCTG
GCTCCGGAGAACACCACCACGTACCCGGTGCTTGTGCGGGTGACGATGAACGGGACCAAGCGCGG
CGACAAACTGGGCAAAAAGAAGCTTTCGACCGTGGTCGAGGCTCCCCAGATGGAAGAGTTCTGGG
CCACCTACATCGGTGTGCTTCGAGACGGCATGGTGGGGTTGAAACAGACCCAGAAGAAGAAGAAG
AAGGAGAACAAAGTGACGAAGTAGGGACGAGGGGGACTCTAGCCCCAGGCTGGGTTGGCATCGAC
ACATAACTAATAAATCATTAACGTTTCATTGACTCAGAACCACGCTGGGTGGTGGATACGTAGGT
GTATAAAGTTGGCCATGGAATGGACTGGCCTAGACCATGGAATGGCTGGCCCAGTATACCATGGA
ATGGCCTGGCCCGATAGATCATGGAATTGGCCTAGACCATATGGA
Right flanking sequence: Indices 15362 -- 15861
TCTTCTCATCTGTAGGCGCGTCAACAACTCGACGCAACAAGGCGGGGACCAAACTATGCCTATTG
GGTCTGTTCCCGCGTGACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCATGTTTGTTTTGGTT
AGGTCGTGACCGACCGATAGACGAGCACTCGAAGGAATGCGGTTACCGAGAATGCCATTCGTAAA
TGCACCCGTCGTAATCGCCATAAATGCACCCGTCGTAATCGCCCGTCGTAAACGCCGTAATGCAT
TAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTTACTCCTGTTCGACCATCAACAT
GCCCAGCGGGTAGATGGCCGGCACCTCGCTGATGGCCTCGTCGCGGTGCTCGTTCAACAGGACGC
GTGGCGGGACCGCCAGCACCAACGTGAACCCGTAGTGCATCGTGAAGTTGTGGAACTTGCTGGTG
AACTGCGTCTCGCTCATCTCCAGCGTGGCCGTGCCAAGCAAGCCC
Found at i:15585 original size:24 final size:24
Alignment explanation
Indices: 15553--15599 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
15543 ATGCCATTCG
15553 TAAATGCACCCGTCGTAATCGCCA
1 TAAATGCACCCGTCGTAATCGCCA
15577 TAAATGCACCCGTCGTAATCGCC
1 TAAATGCACCCGTCGTAATCGCC
15600 CGTCGTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (24 bp):
TAAATGCACCCGTCGTAATCGCCA
Left flanking sequence: Indices 15053 -- 15552
GACACATAACTAATAAATCATTAACGTTTCATTGACTCAGAACCACGCTGGGTGGTGGATACGTA
GGTGTATAAAGTTGGCCATGGAATGGACTGGCCTAGACCATGGAATGGCTGGCCCAGTATACCAT
GGAATGGCCTGGCCCGATAGATCATGGAATTGGCCTAGACCATATGGACTGGCCCAGGAGACCAT
GGATGGGCTGGCCCAGTAGACCATGGATTGGCTAGCCCAGTAAACCATGGAATGGGCTGGTGTAG
ACCATAGAATAGGCTGGCCCAGTAAACCATGGAATGGGCTGGTCTAGACTCTTCTCATCTGTAGG
CGCGTCAACAACTCGACGCAACAAGGCGGGGACCAAACTATGCCTATTGGGTCTGTTCCCGCGTG
ACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCATGTTTGTTTTGGTTAGGTCGTGACCGACCG
ATAGACGAGCACTCGAAGGAATGCGGTTACCGAGAATGCCATTCG
Right flanking sequence: Indices 15600 -- 16099
CGTCGTAAACGCCGTAATGCATTAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTT
ACTCCTGTTCGACCATCAACATGCCCAGCGGGTAGATGGCCGGCACCTCGCTGATGGCCTCGTCG
CGGTGCTCGTTCAACAGGACGCGTGGCGGGACCGCCAGCACCAACGTGAACCCGTAGTGCATCGT
GAAGTTGTGGAACTTGCTGGTGAACTGCGTCTCGCTCATCTCCAGCGTGGCCGTGCCAAGCAAGC
CCCGGTTCACCAACTCCACGTACGTGTAGAGGTCCTCGACCTTGCGCTCGCCGTCCATCACCACC
TGTTTGCGCGACCCGTCGCTAAACTTGACGGCGATGCGGGCTCCCGACGCGTCGTCACGGGCGAA
CCGGTGGTGGGCCTGGTAGCGCAACCACTGGTCCTCGGCCTGTTTGCGCTCGCGATGCAACTTCT
TGAGCCGGTCCTGCTGCAACAGCTGCTGGTACGACAAGTCCTGCT
Found at i:17998 original size:9 final size:9
Alignment explanation
Indices: 17984--18024 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
17974 CTGAAACACT
17984 TTGTTCCAC
1 TTGTTCCAC
17993 TTGTTCCAC
1 TTGTTCCAC
18002 TTGTGAT-CAC
1 TTGT--TCCAC
18012 TTGTTCCAC
1 TTGTTCCAC
18021 TTGT
1 TTGT
18025 GATCCAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 1 0.03
9 20 0.69
10 7 0.24
11 1 0.03
ACGTcount: A:0.12, C:0.27, G:0.15, T:0.46
Consensus pattern (9 bp):
TTGTTCCAC
Left flanking sequence: Indices 17484 -- 17983
TCGCTCGTGTCATTCGTAGTTCCTTAGCACTGCGCAGACCCACACTACTCGGGTCTCCGGATCAT
CTTCTACATATTCCGCACGATTTTTCCGAAATCCATACAAAAACCAGGATATGGCGAATCGTCGC
ACTGCCCGGGTTCGAGTGCAAACGCACGCATCGCCACTGGTGGCTAATGACGTAACATGACCACA
TAGTGCCCAACTACTTATAATTGCGGTCAGACCAAATGCCACCACGTAACATCACCTCGCAGATT
GTCCTCACAACGAGCAACTCAATTAGCCACCAGGCGCGATGAGACCACGGGGTGGTGAATAGCGC
GGGATGCAGATACGACTAAGCCAGCAAGCAGGGTGAAGCAAGAGAAACAAGAGAATCGTAGTCTC
GTCACGATCAGAAGGTGATCCAAATCAGTCAGCACGGAACATCTTACCGAACATCTTACCTACTC
TCTATATCTCTACCCTTGCTACTCTACAATCTCTACTGAAACACT
Right flanking sequence: Indices 18025 -- 18524
GATCCAGAAAATTTGCATGCTTGTGTCGCAAATCAATTATAATTGTCCCGAACACGGTAATTATC
CGCGGTTCGGTGACGCTATGCACGGAACCCTGCCGCAAACAGGCGGCCTGCCCCCACCCTGGCGT
CACTCTACTCTCGAAAATGCCTCAGTTGTGGTCCACCACATTATTCATAGCGCGTTTGGCAACAA
TCACACACACAATAGCAACGGCTGCACACTGCAAGGAAGACAGGCCGGCAGCCGTCATTAGCCAC
CACAGGCGATCCAGGAACCACTTCCACTACTACACTACGCGGGTTTTCACCCTGGCGGCCCGCGT
GGCCATCTCGTAGGCTTCCCCGCTAAGGCCCCACCAAATTTTTCACTCACCGGTATTTTTTCCGC
GATAGTCGCGGTGCAGCCGAGTCGGCCAGCACAGAAAAGAGGTGCTGTGGAGAGGAGGCCACGAT
AAGGAACCCAGCGTAAAACCGTAGCGAACACGGGCCAAAGAGCCC
Found at i:18012 original size:19 final size:19
Alignment explanation
Indices: 17990--18028 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
17980 CACTTTGTTC
17990 CACTTGTTCCACTTGTGAT
1 CACTTGTTCCACTTGTGAT
18009 CACTTGTTCCACTTGTGAT
1 CACTTGTTCCACTTGTGAT
18028 C
1 C
18029 CAGAAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.41
Consensus pattern (19 bp):
CACTTGTTCCACTTGTGAT
Left flanking sequence: Indices 17490 -- 17989
GTGTCATTCGTAGTTCCTTAGCACTGCGCAGACCCACACTACTCGGGTCTCCGGATCATCTTCTA
CATATTCCGCACGATTTTTCCGAAATCCATACAAAAACCAGGATATGGCGAATCGTCGCACTGCC
CGGGTTCGAGTGCAAACGCACGCATCGCCACTGGTGGCTAATGACGTAACATGACCACATAGTGC
CCAACTACTTATAATTGCGGTCAGACCAAATGCCACCACGTAACATCACCTCGCAGATTGTCCTC
ACAACGAGCAACTCAATTAGCCACCAGGCGCGATGAGACCACGGGGTGGTGAATAGCGCGGGATG
CAGATACGACTAAGCCAGCAAGCAGGGTGAAGCAAGAGAAACAAGAGAATCGTAGTCTCGTCACG
ATCAGAAGGTGATCCAAATCAGTCAGCACGGAACATCTTACCGAACATCTTACCTACTCTCTATA
TCTCTACCCTTGCTACTCTACAATCTCTACTGAAACACTTTGTTC
Right flanking sequence: Indices 18029 -- 18528
CAGAAAATTTGCATGCTTGTGTCGCAAATCAATTATAATTGTCCCGAACACGGTAATTATCCGCG
GTTCGGTGACGCTATGCACGGAACCCTGCCGCAAACAGGCGGCCTGCCCCCACCCTGGCGTCACT
CTACTCTCGAAAATGCCTCAGTTGTGGTCCACCACATTATTCATAGCGCGTTTGGCAACAATCAC
ACACACAATAGCAACGGCTGCACACTGCAAGGAAGACAGGCCGGCAGCCGTCATTAGCCACCACA
GGCGATCCAGGAACCACTTCCACTACTACACTACGCGGGTTTTCACCCTGGCGGCCCGCGTGGCC
ATCTCGTAGGCTTCCCCGCTAAGGCCCCACCAAATTTTTCACTCACCGGTATTTTTTCCGCGATA
GTCGCGGTGCAGCCGAGTCGGCCAGCACAGAAAAGAGGTGCTGTGGAGAGGAGGCCACGATAAGG
AACCCAGCGTAAAACCGTAGCGAACACGGGCCAAAGAGCCCCACA
Found at i:19391 original size:12 final size:12
Alignment explanation
Indices: 19376--19428 Score: 90
Period size: 12 Copynumber: 4.5 Consensus size: 12
19366 CGACCCGTCT
19376 CTACGCCCGACC
1 CTACGCCCGACC
19388 CTACGCCCGACC
1 CTACGCCCGACC
*
19400 CTACGCCCGACT
1 CTACGCCCGACC
19412 CTACGCCCGA-C
1 CTACGCCCGACC
19423 CTACGC
1 CTACGC
19429 TTAACCCCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
11 6 0.15
12 33 0.85
ACGTcount: A:0.17, C:0.55, G:0.17, T:0.11
Consensus pattern (12 bp):
CTACGCCCGACC
Left flanking sequence: Indices 18876 -- 19375
GCGAGCAGGGTGTCACCCAGCAGCACCACCGGCTACGCGGGCAGCCCGCGGAGACGCCTGCCTGC
GCGCCCCTGACCACTCACCTTTCTGTTTGCCGTTGGCTTTGCTGTTTTACCCCTCCAGATAGATG
TTCCAGATCTACCCCTCACTTTTTCTTGACCAGGGGTGCGGTAGCACTAAACCCCTATTTCTTCC
CGTCGGACACGCGGACATTGTTCGCGCGGTGGTGCCGGCTGGAGCTCGTATTGGGCCACGGAGTG
CCCTTGGCCCGCGGGGCTGTGGTCCATGCCGTCGTGGTGCGTCGTGGTCCGTAGTCCCGTGGTGC
GTGTCCCGTAGAGGTGCGTGTAGCAACCCTCTCTGTGGCTGAGGTGCGCCAAGCGCAAGCGAACG
GCTAGGCTAGACCAAGCGTGGGTTGCGATAGGGGCGGTCTAGGGGCAGGTCCAGTGTCCCGTTTG
GGTGGTGCTCACTCCCAAACCAGCTCAGCTAAGCCCGACCCGTCT
Right flanking sequence: Indices 19429 -- 19928
TTAACCCCCTCCCTTCAGCCGCTGCATTCTTCCCCCTCTTCCCCACGTCTCGAACTAACTATTCT
TAACACCGGCTTCCGGGCTCAAATCAGGGAGCCCAAGAAAAAAGAACCAAAGCGGGGTCACGTCG
GGGCTCTGGCGGGGGTGCCAGGCCCAGTGGTGGCCGTGTGTGTCGCTGTTTACCCGTCTAGATCA
CACCTAAGTTGCTCAGGTGCACCCCCACGCACCCTGCGGGCTCCGCGCCCCGTTGCTGATAACAT
CGCGTCCGACCGACCCGCCTCAGGCCGTGCATGCATGGTATGCAGCCGCTGAGCGCCATAAGGTG
TTTAAATACGGAAAAGTCCCCAAAGTTTAGATCGACGAACGATACCGCACGGACCTGTTTGACAC
ATTCTCGATCACCGATCCACCCCGAGACCCATTCTACGCACGCCCGATCCTCGCGTAGTATCCCA
TCGCAACTTGCAAATTTCAGCTACCGCTAAGGCACCAGAGCACAT
Found at i:20083 original size:14 final size:14
Alignment explanation
Indices: 20064--20090 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20054 AGCCTCCTTT
20064 CTTACTAGTCTCCA
1 CTTACTAGTCTCCA
20078 CTTACTAGTCTCC
1 CTTACTAGTCTCC
20091 GTTCTACTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.37, G:0.07, T:0.37
Consensus pattern (14 bp):
CTTACTAGTCTCCA
Left flanking sequence: Indices 19564 -- 20063
CTGGCGGGGGTGCCAGGCCCAGTGGTGGCCGTGTGTGTCGCTGTTTACCCGTCTAGATCACACCT
AAGTTGCTCAGGTGCACCCCCACGCACCCTGCGGGCTCCGCGCCCCGTTGCTGATAACATCGCGT
CCGACCGACCCGCCTCAGGCCGTGCATGCATGGTATGCAGCCGCTGAGCGCCATAAGGTGTTTAA
ATACGGAAAAGTCCCCAAAGTTTAGATCGACGAACGATACCGCACGGACCTGTTTGACACATTCT
CGATCACCGATCCACCCCGAGACCCATTCTACGCACGCCCGATCCTCGCGTAGTATCCCATCGCA
ACTTGCAAATTTCAGCTACCGCTAAGGCACCAGAGCACATCGCACTAGCACGGCGCTGCACACCG
CACTTCCGCCTATAAATTCCCGCTACCACTGACTAGCAGTAAGCGAATTCTCAGTACTAGCACCA
GACTTGACCAGCTAGCAGCTCCATTGAAACCCGCTAGCCTCCTTT
Right flanking sequence: Indices 20091 -- 20590
GTTCTACTAGTGTCCTTTGCTAACGTCTGCTACAGCACACCTAGCACACACTCAGCACACGCTTG
GCACACACACACACACACCAAGCACCCACCCACACACACACACATGTCTACCGTCATCACCAGGA
CCCAGCCGCCGTCGCGCGCCACCGTGGCCCTCCCGACGCTACGGTTCCACGCCGAGTGTCTCCTG
CTGCTCCTGACCCACTTCCTCAACGGCGAGTTCGCGCTGTTCCCCACCACCAAGGTGTTGCACCC
GCTTCTGCACACCCTGGCGGAGATCCTGAGCCTCCTCTGCCGGCTCTCCGAGCGGTGCGTGCAGT
TGATCACCACCGTCAAGACGTTCAACCTCCAGATCGCGCTGTTGGACGACCACCCCGAGGTGGTG
GCGTCGCAGCTCGAGGACTTGATCGAGGTGTTCTTCCACGACCGGTTGCAGCACCTCGTCGATGA
CATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGACTTCCG
Found at i:20843 original size:25 final size:25
Alignment explanation
Indices: 20806--20904 Score: 84
Period size: 25 Copynumber: 4.2 Consensus size: 25
20796 GGCGTGTAGG
* * *
20806 CGCCACGGGACACTCCACGAGTACA
1 CGCCAAGGTACACGCCACGAGTACA
20831 CGCCAAGGTACACGCCAC--G-ACA
1 CGCCAAGGTACACGCCACGAGTACA
* * *
20853 CGCC-ACG-ACACGCC-CAAGCACA
1 CGCCAAGGTACACGCCACGAGTACA
* *
20875 CGCCAAAGTACACGCCATGAGTACA
1 CGCCAAGGTACACGCCACGAGTACA
20900 CGCCA
1 CGCCA
20905 CGACGTATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.02
20 7 0.12
21 3 0.05
22 14 0.23
23 3 0.05
24 7 0.12
25 25 0.42
ACGTcount: A:0.31, C:0.41, G:0.21, T:0.06
Consensus pattern (25 bp):
CGCCAAGGTACACGCCACGAGTACA
Left flanking sequence: Indices 20306 -- 20805
CAACGGCGAGTTCGCGCTGTTCCCCACCACCAAGGTGTTGCACCCGCTTCTGCACACCCTGGCGG
AGATCCTGAGCCTCCTCTGCCGGCTCTCCGAGCGGTGCGTGCAGTTGATCACCACCGTCAAGACG
TTCAACCTCCAGATCGCGCTGTTGGACGACCACCCCGAGGTGGTGGCGTCGCAGCTCGAGGACTT
GATCGAGGTGTTCTTCCACGACCGGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTACA
AGTACAACATGCAGTTCGACTTCCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCAC
CTCCAGCGGGTGGTGGGCGGCGCGGTGATGCCCCCCACCGCGGTGAGCGTCGCCGACTTGGACAA
CTACCTGTTTGTCGAGCAGGTGCTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGT
TGGCGCGGGTGGTGGACCGCATCCAGGCCGCGGGCGGCGTGTAGG
Right flanking sequence: Indices 20905 -- 21404
CGACGTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAAGAAGTTGTAAGA
AATTGGGAGAAGTGTAGGGAATTGGTAAAGGTGTATGGAATTGGGGAAGTAGGTTGGTGGATGTG
GTGGATGTGGTGGATGTGCCTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGT
TGTCGAGGGTATGGTTGTCGAGGATATGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTG
TATTAGTTTTGGCTGTTTGGCTGTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCA
ATGGGTTTATGAGCGCTTGTGGTGGAAAGAAGTGGTAGAAAAAGTGGTAGCAAGAGAACAGGGGA
AGTGCGAAAAAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGC
CTTCTTGGTGGGTTGTTGTGGGTCGTAGTTGGTTTGACTGGGCTT
Found at i:20855 original size:10 final size:10
Alignment explanation
Indices: 20840--20866 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
20830 ACGCCAAGGT
20840 ACACGCCACG
1 ACACGCCACG
20850 ACACGCCACG
1 ACACGCCACG
20860 ACACGCC
1 ACACGCC
20867 CAAGCACACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.52, G:0.19, T:0.00
Consensus pattern (10 bp):
ACACGCCACG
Left flanking sequence: Indices 20340 -- 20839
GTGTTGCACCCGCTTCTGCACACCCTGGCGGAGATCCTGAGCCTCCTCTGCCGGCTCTCCGAGCG
GTGCGTGCAGTTGATCACCACCGTCAAGACGTTCAACCTCCAGATCGCGCTGTTGGACGACCACC
CCGAGGTGGTGGCGTCGCAGCTCGAGGACTTGATCGAGGTGTTCTTCCACGACCGGTTGCAGCAC
CTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGACTTCCGCCCGAAGCA
CTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCGGCGCGGTGATGCCCC
CCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTGCTCCTGGCGCAC
GCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCATCCAGGCCGCGGG
CGGCGTGTAGGCGCCACGGGACACTCCACGAGTACACGCCAAGGT
Right flanking sequence: Indices 20867 -- 21366
CAAGCACACGCCAAAGTACACGCCATGAGTACACGCCACGACGTATATAATGAATTAACGAGTTA
TGATCACAAGATGTAGGGAACTGGAAGAAGTTGTAAGAAATTGGGAGAAGTGTAGGGAATTGGTA
AAGGTGTATGGAATTGGGGAAGTAGGTTGGTGGATGTGGTGGATGTGGTGGATGTGCCTGTTCTG
GTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGTTGTCGAGGGTATGGTTGTCGAGGATAT
GGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTGTATTAGTTTTGGCTGTTTGGCTGTTTG
GCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGAGCGCTTGTGGTGGAA
AGAAGTGGTAGAAAAAGTGGTAGCAAGAGAACAGGGGAAGTGCGAAAAAAGTACCAGTCCCAGCT
GGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTG
Found at i:20899 original size:13 final size:12
Alignment explanation
Indices: 20825--20904 Score: 69
Period size: 12 Copynumber: 6.9 Consensus size: 12
20815 ACACTCCACG
20825 AGTACACGCCAA
1 AGTACACGCCAA
*
20837 GGTACACGCC-A
1 AGTACACGCCAA
*
20848 CG-ACACGCC-A
1 AGTACACGCCAA
* *
20858 CG-ACACGCCCA
1 AGTACACGCCAA
*
20869 AGCACACGCCAA
1 AGTACACGCCAA
*
20881 AGTACACGCCATG
1 AGTACACGCCA-A
20894 AGTACACGCCA
1 AGTACACGCCA
20905 CGACGTATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
10 17 0.29
11 4 0.07
12 27 0.46
13 11 0.19
ACGTcount: A:0.34, C:0.40, G:0.20, T:0.06
Consensus pattern (12 bp):
AGTACACGCCAA
Left flanking sequence: Indices 20325 -- 20824
TTCCCCACCACCAAGGTGTTGCACCCGCTTCTGCACACCCTGGCGGAGATCCTGAGCCTCCTCTG
CCGGCTCTCCGAGCGGTGCGTGCAGTTGATCACCACCGTCAAGACGTTCAACCTCCAGATCGCGC
TGTTGGACGACCACCCCGAGGTGGTGGCGTCGCAGCTCGAGGACTTGATCGAGGTGTTCTTCCAC
GACCGGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGA
CTTCCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCG
GCGCGGTGATGCCCCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAG
GTGCTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCG
CATCCAGGCCGCGGGCGGCGTGTAGGCGCCACGGGACACTCCACG
Right flanking sequence: Indices 20905 -- 21404
CGACGTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAAGAAGTTGTAAGA
AATTGGGAGAAGTGTAGGGAATTGGTAAAGGTGTATGGAATTGGGGAAGTAGGTTGGTGGATGTG
GTGGATGTGGTGGATGTGCCTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGT
TGTCGAGGGTATGGTTGTCGAGGATATGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTG
TATTAGTTTTGGCTGTTTGGCTGTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCA
ATGGGTTTATGAGCGCTTGTGGTGGAAAGAAGTGGTAGAAAAAGTGGTAGCAAGAGAACAGGGGA
AGTGCGAAAAAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGC
CTTCTTGGTGGGTTGTTGTGGGTCGTAGTTGGTTTGACTGGGCTT
Found at i:20992 original size:19 final size:19
Alignment explanation
Indices: 20943--21019 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
20933 GATCACAAGA
* *
20943 TGTAGGGAACTGGAAGAAG
1 TGTAGGGAATTGGGAGAAG
* *
20962 TTGTAAGAAATTGGGAGAAG
1 -TGTAGGGAATTGGGAGAAG
*
20982 TGTAGGGAATTGGTA-AAGG
1 TGTAGGGAATTGGGAGAA-G
*
21001 TGTATGGAATTGGG-GAAG
1 TGTAGGGAATTGGGAGAAG
21019 T
1 T
21020 AGGTTGGTGG
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
18 4 0.09
19 27 0.59
20 15 0.33
ACGTcount: A:0.34, C:0.01, G:0.40, T:0.25
Consensus pattern (19 bp):
TGTAGGGAATTGGGAGAAG
Left flanking sequence: Indices 20443 -- 20942
TCCAGATCGCGCTGTTGGACGACCACCCCGAGGTGGTGGCGTCGCAGCTCGAGGACTTGATCGAG
GTGTTCTTCCACGACCGGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAA
CATGCAGTTCGACTTCCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGC
GGGTGGTGGGCGGCGCGGTGATGCCCCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTG
TTTGTCGAGCAGGTGCTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCG
GGTGGTGGACCGCATCCAGGCCGCGGGCGGCGTGTAGGCGCCACGGGACACTCCACGAGTACACG
CCAAGGTACACGCCACGACACGCCACGACACGCCCAAGCACACGCCAAAGTACACGCCATGAGTA
CACGCCACGACGTATATAATGAATTAACGAGTTATGATCACAAGA
Right flanking sequence: Indices 21020 -- 21519
AGGTTGGTGGATGTGGTGGATGTGGTGGATGTGCCTGTTCTGGTTACTTCGGCGCGTTAAGTGGT
TGTGGAGGATATGGTTGTCGAGGGTATGGTTGTCGAGGATATGGAAGTTGTGGAGGTTGTGGTTG
TGTTTGTGGCGGTTGTATTAGTTTTGGCTGTTTGGCTGTTTGGCTGTTTTGGACTTGGTGGATTT
GATTAGGACTATCCAATGGGTTTATGAGCGCTTGTGGTGGAAAGAAGTGGTAGAAAAAGTGGTAG
CAAGAGAACAGGGGAAGTGCGAAAAAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCC
CAGACCCCCCACCGCCTTCTTGGTGGGTTGTTGTGGGTCGTAGTTGGTTTGACTGGGCTTCTTAT
TGTGTGTTGGAAGGGGTCTATATTTCTTAGACCGGATATTGAATGTCGTGTAGTACAATTGCGCC
ATTGATAGTTTAGGTGGGCCAGGTTCTTACAATTGGGTTAAGTAG
Found at i:21038 original size:9 final size:9
Alignment explanation
Indices: 21024--21052 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
21014 GGAAGTAGGT
21024 TGGTGGATG
1 TGGTGGATG
21033 TGGTGGATG
1 TGGTGGATG
21042 TGGTGGATG
1 TGGTGGATG
21051 TG
1 TG
21053 CCTGTTCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.55, T:0.34
Consensus pattern (9 bp):
TGGTGGATG
Left flanking sequence: Indices 20524 -- 21023
GGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGACTTC
CGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCGGCGC
GGTGATGCCCCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTGC
TCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCATC
CAGGCCGCGGGCGGCGTGTAGGCGCCACGGGACACTCCACGAGTACACGCCAAGGTACACGCCAC
GACACGCCACGACACGCCCAAGCACACGCCAAAGTACACGCCATGAGTACACGCCACGACGTATA
TAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAAGAAGTTGTAAGAAATTGGGAG
AAGTGTAGGGAATTGGTAAAGGTGTATGGAATTGGGGAAGTAGGT
Right flanking sequence: Indices 21053 -- 21552
CCTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGTTGTCGAGGGTATGGTTGT
CGAGGATATGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTGTATTAGTTTTGGCTGTTT
GGCTGTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGAGCGCTT
GTGGTGGAAAGAAGTGGTAGAAAAAGTGGTAGCAAGAGAACAGGGGAAGTGCGAAAAAAGTACCA
GTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTGGTGGGTTGTTG
TGGGTCGTAGTTGGTTTGACTGGGCTTCTTATTGTGTGTTGGAAGGGGTCTATATTTCTTAGACC
GGATATTGAATGTCGTGTAGTACAATTGCGCCATTGATAGTTTAGGTGGGCCAGGTTCTTACAAT
TGGGTTAAGTAGTTAAGTAGGTAGGCTATTAGGGTAGGAATGTTG
Found at i:21101 original size:15 final size:15
Alignment explanation
Indices: 21081--21151 Score: 70
Period size: 15 Copynumber: 4.5 Consensus size: 15
21071 GCGCGTTAAG
21081 TGGTTGTGGAGGATA
1 TGGTTGTGGAGGATA
* *
21096 TGGTTGTCGAGGGTA
1 TGGTTGTGGAGGATA
*
21111 TGGTTGTCGAGGATA
1 TGGTTGTGGAGGATA
* *
21126 TGGAAGTTGTGGAGGTTG
1 T-G--GTTGTGGAGGATA
21144 TGGTTGTG
1 TGGTTGTG
21152 TTTGTGGCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
15 34 0.72
16 1 0.02
17 1 0.02
18 11 0.23
ACGTcount: A:0.15, C:0.03, G:0.46, T:0.35
Consensus pattern (15 bp):
TGGTTGTGGAGGATA
Left flanking sequence: Indices 20581 -- 21080
TCGACTTCCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTG
GGCGGCGCGGTGATGCCCCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGA
GCAGGTGCTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGG
ACCGCATCCAGGCCGCGGGCGGCGTGTAGGCGCCACGGGACACTCCACGAGTACACGCCAAGGTA
CACGCCACGACACGCCACGACACGCCCAAGCACACGCCAAAGTACACGCCATGAGTACACGCCAC
GACGTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAAGAAGTTGTAAGAA
ATTGGGAGAAGTGTAGGGAATTGGTAAAGGTGTATGGAATTGGGGAAGTAGGTTGGTGGATGTGG
TGGATGTGGTGGATGTGCCTGTTCTGGTTACTTCGGCGCGTTAAG
Right flanking sequence: Indices 21152 -- 21651
TTTGTGGCGGTTGTATTAGTTTTGGCTGTTTGGCTGTTTGGCTGTTTTGGACTTGGTGGATTTGA
TTAGGACTATCCAATGGGTTTATGAGCGCTTGTGGTGGAAAGAAGTGGTAGAAAAAGTGGTAGCA
AGAGAACAGGGGAAGTGCGAAAAAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCA
GACCCCCCACCGCCTTCTTGGTGGGTTGTTGTGGGTCGTAGTTGGTTTGACTGGGCTTCTTATTG
TGTGTTGGAAGGGGTCTATATTTCTTAGACCGGATATTGAATGTCGTGTAGTACAATTGCGCCAT
TGATAGTTTAGGTGGGCCAGGTTCTTACAATTGGGTTAAGTAGTTAAGTAGGTAGGCTATTAGGG
TAGGAATGTTGTTAGAGTCGGTACGCCGTTAGAGTAGGTTGATCGTTAGCGTAGGTGGTGGGTGG
GATTGTCGCGTTGGTTGTCTTTCCAACCCTACCCGCTTAGACACC
Found at i:21201 original size:9 final size:8
Alignment explanation
Indices: 21172--21198 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
21162 TTGTATTAGT
21172 TTTGGCTG
1 TTTGGCTG
21180 TTTGGCTG
1 TTTGGCTG
21188 TTTGGCTG
1 TTTGGCTG
21196 TTT
1 TTT
21199 TGGACTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.33, T:0.56
Consensus pattern (8 bp):
TTTGGCTG
Left flanking sequence: Indices 20672 -- 21171
GGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTGCTCCTGGCGCACGCGTTCT
TGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCATCCAGGCCGCGGGCGGCGTG
TAGGCGCCACGGGACACTCCACGAGTACACGCCAAGGTACACGCCACGACACGCCACGACACGCC
CAAGCACACGCCAAAGTACACGCCATGAGTACACGCCACGACGTATATAATGAATTAACGAGTTA
TGATCACAAGATGTAGGGAACTGGAAGAAGTTGTAAGAAATTGGGAGAAGTGTAGGGAATTGGTA
AAGGTGTATGGAATTGGGGAAGTAGGTTGGTGGATGTGGTGGATGTGGTGGATGTGCCTGTTCTG
GTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGTTGTCGAGGGTATGGTTGTCGAGGATAT
GGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTGTATTAGT
Right flanking sequence: Indices 21199 -- 21698
TGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGAGCGCTTGTGGTGGAAAGAAGTG
GTAGAAAAAGTGGTAGCAAGAGAACAGGGGAAGTGCGAAAAAAGTACCAGTCCCAGCTGGGGGGC
CGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTGGTGGGTTGTTGTGGGTCGTAGTTGGTT
TGACTGGGCTTCTTATTGTGTGTTGGAAGGGGTCTATATTTCTTAGACCGGATATTGAATGTCGT
GTAGTACAATTGCGCCATTGATAGTTTAGGTGGGCCAGGTTCTTACAATTGGGTTAAGTAGTTAA
GTAGGTAGGCTATTAGGGTAGGAATGTTGTTAGAGTCGGTACGCCGTTAGAGTAGGTTGATCGTT
AGCGTAGGTGGTGGGTGGGATTGTCGCGTTGGTTGTCTTTCCAACCCTACCCGCTTAGACACCGT
TGATCTCATCGTGATTGTGCTGGGCGTTAGTCTGGCGTGACAATG
Found at i:22103 original size:20 final size:20
Alignment explanation
Indices: 22056--22114 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
22046 GAGGTGGCGA
*
22056 AGGTGGCGGAGGTGGTGGAG
1 AGGTGGTGGAGGTGGTGGAG
**
22076 AGACGGTGGA-GTCGGTGGAG
1 AGGTGGTGGAGGT-GGTGGAG
*
22096 AGGTGGTGGTGGGTGGTGG
1 AGGTGGTGG-AGGTGGTGG
22115 CTAGTGTGGT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.07
20 21 0.70
21 5 0.17
22 2 0.07
ACGTcount: A:0.14, C:0.05, G:0.63, T:0.19
Consensus pattern (20 bp):
AGGTGGTGGAGGTGGTGGAG
Left flanking sequence: Indices 21556 -- 22055
GAGTCGGTACGCCGTTAGAGTAGGTTGATCGTTAGCGTAGGTGGTGGGTGGGATTGTCGCGTTGG
TTGTCTTTCCAACCCTACCCGCTTAGACACCGTTGATCTCATCGTGATTGTGCTGGGCGTTAGTC
TGGCGTGACAATGTCTGTCACCCGATTGATCTCATCCACTGGGTGGTCGCTACCAATTGTTCCCG
GTATTGTTCGGTGCACATACCCGCCTAGCATCCCGACAATGGGTGGGAGAGTGAGAGGTGACGAG
TGGGCTCGTGGGCTTGTGGGGGACAGAAAGGGGTTCGGGGATGTAACCAGCCAACACGTGGACGA
GGTAGTTGTATGTGTGGGCTTTTGTAACCTTCCATACTGTTTTCAGTCCGTAGGCGTGCATGACC
CAATTGTAGCCTATGTAATAGTGCTGCCCGGCCAGATGGGCCCGGCTAAAGTAGCCTGGCGGGGT
GTGGACGCAACTGTTGCGTCAGTGGGCGTTGGAGAGAGGTGGCGA
Right flanking sequence: Indices 22115 -- 22614
CTAGTGTGGTAGCATACGGGACCTAAGCGTGTGGGGCCACTTGCGGTCAGGGGACTAAACACCGA
AACTAGCCTTGGTGTGTGGGCCCATTGAACATTCTTAAAGAATATTACCGTGAATCACTCGAGAT
TATCACTACACTTACTTCTCTTAGTTAGCATGGGCACTACCAAAAGACCAGGTCTGTTCCTTCAC
AGCCATACCTCTTGACTAATCCGGTAAAGCCAATGCGCCCTGGTCCATGTGAAACCACTCGGTGC
TGGGCTTCGTAAAGGCACGCAAAGGCCACCGCCTACGGGTGCGAACAACGAGCAATCGAACACAC
TGCAAGGCAAACGCACGATTACGATCCGGGCCAAGACCCACTCGCTTCCGTTGCTACATTTAGAT
ACGGCCAATTGCTCACCGTCTTTCGCCCGCTCAACATTCTCCCCCGTCTAACCCTTATCTACCCC
TCCTCTTCGCCACCGTATTTCTCCTCGCAACCGGTGCGACCCACC
Found at i:24400 original size:9 final size:9
Alignment explanation
Indices: 24386--24422 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
24376 GACGTGGGAA
24386 GTGGAGTCT
1 GTGGAGTCT
24395 GTGGAGTCT
1 GTGGAGTCT
24404 GTGGAGTCT
1 GTGGAGTCT
24413 GTGGAGTCT
1 GTGGAGTCT
24422 G
1 G
24423 GTGGTGGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.11, C:0.11, G:0.46, T:0.32
Consensus pattern (9 bp):
GTGGAGTCT
Left flanking sequence: Indices 23886 -- 24385
CTACCAGGCGCCCGACCCCAGTGGCCCCGGGGTCGCCCCCGTCACCGTGGCGCCCCCGGTGCTCT
TTTGGGGGTGCGATGTGCTGGACGGTGCCCTCTTGGGCAAGCTGCCGTTGGACAACAAGCGGACC
ATAGGCGGCAACTACGAGGCGTTTTTCACCGACGACACCGTGTTCTACCACGTGTTGCCCGCGCT
GGAGCCCCAGCCGTTGGTGGTGGAGGTGCCCGTGGCCCACCACAGCTACGACCGGGCCAACGTGG
CCACCACGACGGCGGTGGCGCTCGGGGTGGTGATGATCTTGTTCACGATGGTGGCCCGGTTGACC
CGGGCGCCGAAAAAGGCCAGGGTTCCGGCCAAGGCTGAGCCCAGGGCCCCGGTGAAGGCCCAGAA
GGTAGAGTAATACAGGTTCGTAGAGGCTTTCGGGGGTGGTAGGGGCTGTGATGCTGGGGGGGGCG
CAAGCGGCGCCCCCCCAGACCCCCCCAGCGCTTAGGACGTGGGAA
Right flanking sequence: Indices 24423 -- 24922
GTGGTGGAGTCTGGTGGTGGTATATACCATTGAGTAGTATATGGAAGAAAAGTGCGGATCGGCTG
GCTTTTAGGGAAATGTGAGAAGTGGAATAACATCTAAACGCTGCAATAATGGTCCTGGTTGACTC
TCGCTGCCCTGCTTGACCGTATTCCCACCTTTCGTGGCTTTGACCTTTGGCTCGCAAGTACTACA
TGCAGGATTTGCAACCACGGCTGAACCCAACGGGTGAAAAATACGCCAATCCCGATGGCGTCCCG
ATTGGTGACGACATACGTGTTCTCGGGCCCACCAGGATGGTCCTAGCGATGGCCGTTTGAGCCCA
CGATGATTTCCGCGTCAAGAGTTTTTAACCACCTCTTTTTGAATTTCGCCAGATTTAGCAAGAAA
AGTCAGACAGAGATGAGCACCAAGGCATCTTTCAAGAGAAAGAGCTGTGATAAGAGCCTATAACC
TTCGTGCTCAAATAAAAACCCTATGAACCTCGTGCTTATGTCCGT
Found at i:24431 original size:13 final size:13
Alignment explanation
Indices: 24413--24442 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
24403 TGTGGAGTCT
24413 GTGGAGTCTGGTG
1 GTGGAGTCTGGTG
24426 GTGGAGTCTGGTG
1 GTGGAGTCTGGTG
24439 GTGG
1 GTGG
24443 TATATACCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.57, T:0.30
Consensus pattern (13 bp):
GTGGAGTCTGGTG
Left flanking sequence: Indices 23913 -- 24412
CGGGGTCGCCCCCGTCACCGTGGCGCCCCCGGTGCTCTTTTGGGGGTGCGATGTGCTGGACGGTG
CCCTCTTGGGCAAGCTGCCGTTGGACAACAAGCGGACCATAGGCGGCAACTACGAGGCGTTTTTC
ACCGACGACACCGTGTTCTACCACGTGTTGCCCGCGCTGGAGCCCCAGCCGTTGGTGGTGGAGGT
GCCCGTGGCCCACCACAGCTACGACCGGGCCAACGTGGCCACCACGACGGCGGTGGCGCTCGGGG
TGGTGATGATCTTGTTCACGATGGTGGCCCGGTTGACCCGGGCGCCGAAAAAGGCCAGGGTTCCG
GCCAAGGCTGAGCCCAGGGCCCCGGTGAAGGCCCAGAAGGTAGAGTAATACAGGTTCGTAGAGGC
TTTCGGGGGTGGTAGGGGCTGTGATGCTGGGGGGGGCGCAAGCGGCGCCCCCCCAGACCCCCCCA
GCGCTTAGGACGTGGGAAGTGGAGTCTGTGGAGTCTGTGGAGTCT
Right flanking sequence: Indices 24443 -- 24942
TATATACCATTGAGTAGTATATGGAAGAAAAGTGCGGATCGGCTGGCTTTTAGGGAAATGTGAGA
AGTGGAATAACATCTAAACGCTGCAATAATGGTCCTGGTTGACTCTCGCTGCCCTGCTTGACCGT
ATTCCCACCTTTCGTGGCTTTGACCTTTGGCTCGCAAGTACTACATGCAGGATTTGCAACCACGG
CTGAACCCAACGGGTGAAAAATACGCCAATCCCGATGGCGTCCCGATTGGTGACGACATACGTGT
TCTCGGGCCCACCAGGATGGTCCTAGCGATGGCCGTTTGAGCCCACGATGATTTCCGCGTCAAGA
GTTTTTAACCACCTCTTTTTGAATTTCGCCAGATTTAGCAAGAAAAGTCAGACAGAGATGAGCAC
CAAGGCATCTTTCAAGAGAAAGAGCTGTGATAAGAGCCTATAACCTTCGTGCTCAAATAAAAACC
CTATGAACCTCGTGCTTATGTCCGTGCTAGTGCCTAATCTGACTC
Found at i:25167 original size:15 final size:15
Alignment explanation
Indices: 25147--25190 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
25137 CTTCCCCCCT
25147 CTACGAGTCGCCCAC
1 CTACGAGTCGCCCAC
25162 CTACGAGTCGCCCAC
1 CTACGAGTCGCCCAC
25177 CTACGAGTCGCCCA
1 CTACGAGTCGCCCA
25191 TCTTTACGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.14
Consensus pattern (15 bp):
CTACGAGTCGCCCAC
Left flanking sequence: Indices 24647 -- 25146
ACGGGTGAAAAATACGCCAATCCCGATGGCGTCCCGATTGGTGACGACATACGTGTTCTCGGGCC
CACCAGGATGGTCCTAGCGATGGCCGTTTGAGCCCACGATGATTTCCGCGTCAAGAGTTTTTAAC
CACCTCTTTTTGAATTTCGCCAGATTTAGCAAGAAAAGTCAGACAGAGATGAGCACCAAGGCATC
TTTCAAGAGAAAGAGCTGTGATAAGAGCCTATAACCTTCGTGCTCAAATAAAAACCCTATGAACC
TCGTGCTTATGTCCGTGCTAGTGCCTAATCTGACTCCGAAGGCGACCGTCCAGACCCCTTCACGT
ACCCTGTCTGCAGCCATATCAGCCCATTTGCAGCCAGATCGCTTTATCAAAGCGTCTCTAGAGCG
CAATGAGCGGTTATTTCACCAAAAAGAGTGTCTAAAACGCATCGACCGGTTCTTTCACCAAACAA
AGTGTCTCTAGAGCGCAATGAGCGGTTCCTGGGTGCTTCCCCCCT
Right flanking sequence: Indices 25191 -- 25690
TCTTTACGAGTTGCCCAACCTGCTTCTATAACCCTCCGTTACCTATTCACCCTATTTAGCCTCTT
CTATAATTCTCCGTTACCTATTACCCTATGTAGCCTCTACCCCTCGTTACCTATTTCCTTCACCC
ACACCTTCCCCCGGGCTCGGTCCACACCAAACAATTCTCCACCATCCCCATCACCTCGTCGAGAC
TCATCACCCTCACCTCGGCCCCCCGGTAGACCATCGCCTTCACCGCGGGACAATACCGAAACACC
GAGACAAACGTCGCCCCGTGGATACTCACATAGGTAATCCCGCCCGCCCCACAACTCAAGGTCAC
CGTCAAATCCTTACAGAGGACCTCGCCCCGCAACTGGCCGTCGTGGATGCAAAAATTTGCCGGCC
GTCGAAACACCGCGAGGCGTTTGAACCGCACCTGCCACTCCAAAGCATCGACCGCGAGGTCTGGA
AGCTCCCAGTGGGAGGGCCAGCCTCCCGTGGGATGCCCGGGCCCG
Found at i:25293 original size:39 final size:40
Alignment explanation
Indices: 25213--25293 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
25203 GCCCAACCTG
*
25213 CTTCTATAACCCTCCGTTACCTATTCACCCTATTTAGCCT
1 CTTCTATAACCCTCCGTTACCTATTCACCCTATGTAGCCT
**
25253 CTTCTATAATTCTCCGTTACCTATT-ACCCTATGTAGCCT
1 CTTCTATAACCCTCCGTTACCTATTCACCCTATGTAGCCT
25292 CT
1 CT
25294 ACCCCTCGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 15 0.39
40 23 0.61
ACGTcount: A:0.20, C:0.35, G:0.06, T:0.40
Consensus pattern (40 bp):
CTTCTATAACCCTCCGTTACCTATTCACCCTATGTAGCCT
Left flanking sequence: Indices 24713 -- 25212
ACCAGGATGGTCCTAGCGATGGCCGTTTGAGCCCACGATGATTTCCGCGTCAAGAGTTTTTAACC
ACCTCTTTTTGAATTTCGCCAGATTTAGCAAGAAAAGTCAGACAGAGATGAGCACCAAGGCATCT
TTCAAGAGAAAGAGCTGTGATAAGAGCCTATAACCTTCGTGCTCAAATAAAAACCCTATGAACCT
CGTGCTTATGTCCGTGCTAGTGCCTAATCTGACTCCGAAGGCGACCGTCCAGACCCCTTCACGTA
CCCTGTCTGCAGCCATATCAGCCCATTTGCAGCCAGATCGCTTTATCAAAGCGTCTCTAGAGCGC
AATGAGCGGTTATTTCACCAAAAAGAGTGTCTAAAACGCATCGACCGGTTCTTTCACCAAACAAA
GTGTCTCTAGAGCGCAATGAGCGGTTCCTGGGTGCTTCCCCCCTCTACGAGTCGCCCACCTACGA
GTCGCCCACCTACGAGTCGCCCATCTTTACGAGTTGCCCAACCTG
Right flanking sequence: Indices 25294 -- 25793
ACCCCTCGTTACCTATTTCCTTCACCCACACCTTCCCCCGGGCTCGGTCCACACCAAACAATTCT
CCACCATCCCCATCACCTCGTCGAGACTCATCACCCTCACCTCGGCCCCCCGGTAGACCATCGCC
TTCACCGCGGGACAATACCGAAACACCGAGACAAACGTCGCCCCGTGGATACTCACATAGGTAAT
CCCGCCCGCCCCACAACTCAAGGTCACCGTCAAATCCTTACAGAGGACCTCGCCCCGCAACTGGC
CGTCGTGGATGCAAAAATTTGCCGGCCGTCGAAACACCGCGAGGCGTTTGAACCGCACCTGCCAC
TCCAAAGCATCGACCGCGAGGTCTGGAAGCTCCCAGTGGGAGGGCCAGCCTCCCGTGGGATGCCC
GGGCCCGGCCACGGCCACCGTGCCCGGCACACACGTACAAATGTGGAGCCAGTGGGCTGCTACTC
CCACGGCGAACCCGGTCACAGCAGCCACTACAAGAACATCGAGGA
Found at i:26090 original size:16 final size:16
Alignment explanation
Indices: 26064--26155 Score: 121
Period size: 16 Copynumber: 5.8 Consensus size: 16
26054 TTGAGACTCA
*
26064 AGTCTCTAGTCTTCGT
1 AGTCTCCAGTCTTCGT
*
26080 AGTCTACAGTCTTCGT
1 AGTCTCCAGTCTTCGT
*
26096 AGTCTCCAGTCTTTGT
1 AGTCTCCAGTCTTCGT
*
26112 AGTCTCCAGTCTTTGT
1 AGTCTCCAGTCTTCGT
**
26128 AGTCTCCAGTCTTTTT
1 AGTCTCCAGTCTTCGT
*
26144 AGTCGCCAGTCT
1 AGTCTCCAGTCT
26156 CCGCTCGAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 70 1.00
ACGTcount: A:0.14, C:0.26, G:0.18, T:0.41
Consensus pattern (16 bp):
AGTCTCCAGTCTTCGT
Left flanking sequence: Indices 25564 -- 26063
GCAAAAATTTGCCGGCCGTCGAAACACCGCGAGGCGTTTGAACCGCACCTGCCACTCCAAAGCAT
CGACCGCGAGGTCTGGAAGCTCCCAGTGGGAGGGCCAGCCTCCCGTGGGATGCCCGGGCCCGGCC
ACGGCCACCGTGCCCGGCACACACGTACAAATGTGGAGCCAGTGGGCTGCTACTCCCACGGCGAA
CCCGGTCACAGCAGCCACTACAAGAACATCGAGGATGGCGTCGCCATAGCTCACTGCAAACCACA
CGAACCCGTCGCTGTCCATGGCCGCTTTTCTGGGGAAACGGGTCCATATATAGTCGCCTATCGAT
CTTGCATGAACAACGGTAGGCCCGGGTTTCTTTACACGGTATTTTTAAGGCATCCTGCTCGTCAA
TGCAGAAGTGGGCAAACAAATAAGGACAAGAAAAGCGAAGGGGGTGGACGAAGACAGGCGGAATA
TAGAATTTGTCTACAACCTCCTGGATTGAGGTAGATTGAGACTCA
Right flanking sequence: Indices 26156 -- 26655
CCGCTCGAAAAATCTTGTCTGTGCGTTCTCTAGTGACGTCTTTGTTTTGGTTTTGACGTGGTTCC
ACTTGTTCGATTCAGGGACCTGCAGTTATGACGTATGCCACGGCTTGATGAGGGCTTAGGGATTA
TAAAGTCCGTCCCCACTGGTTTTAGCCGCATTCTGCTAACCTTCTTTCCTACTTTCCTGTTTTCT
TTCACACCAGCACGGCTGTCTCTGTCCACCACCGTCAGATCGCAGGAGTTGCATCGAGCCAAGAT
TAGAATACTGTACTGGGATAATGTACTGGGATACTGGAATAATTTACTGATACTTTGCTAGGATA
CTTTGCTCTATACAAAACGGAATATTTACCACTGGAATTGAATCGTTAGCGAAATCATTGGAAAG
TACCTCTCTTTGCGTTTTCCCATTCCAATCGCACCTCCAAAATTTACTGCTTTTTGACGAACTAC
ACTTAAAAATCCGCTATTAGCTATTCTATAATTCTATTCAGTCCA
Found at i:26442 original size:13 final size:13
Alignment explanation
Indices: 26424--26448 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26414 ATTAGAATAC
26424 TGTACTGGGATAA
1 TGTACTGGGATAA
26437 TGTACTGGGATA
1 TGTACTGGGATA
26449 CTGGAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32
Consensus pattern (13 bp):
TGTACTGGGATAA
Left flanking sequence: Indices 25924 -- 26423
ACGGTATTTTTAAGGCATCCTGCTCGTCAATGCAGAAGTGGGCAAACAAATAAGGACAAGAAAAG
CGAAGGGGGTGGACGAAGACAGGCGGAATATAGAATTTGTCTACAACCTCCTGGATTGAGGTAGA
TTGAGACTCAAGTCTCTAGTCTTCGTAGTCTACAGTCTTCGTAGTCTCCAGTCTTTGTAGTCTCC
AGTCTTTGTAGTCTCCAGTCTTTTTAGTCGCCAGTCTCCGCTCGAAAAATCTTGTCTGTGCGTTC
TCTAGTGACGTCTTTGTTTTGGTTTTGACGTGGTTCCACTTGTTCGATTCAGGGACCTGCAGTTA
TGACGTATGCCACGGCTTGATGAGGGCTTAGGGATTATAAAGTCCGTCCCCACTGGTTTTAGCCG
CATTCTGCTAACCTTCTTTCCTACTTTCCTGTTTTCTTTCACACCAGCACGGCTGTCTCTGTCCA
CCACCGTCAGATCGCAGGAGTTGCATCGAGCCAAGATTAGAATAC
Right flanking sequence: Indices 26449 -- 26948
CTGGAATAATTTACTGATACTTTGCTAGGATACTTTGCTCTATACAAAACGGAATATTTACCACT
GGAATTGAATCGTTAGCGAAATCATTGGAAAGTACCTCTCTTTGCGTTTTCCCATTCCAATCGCA
CCTCCAAAATTTACTGCTTTTTGACGAACTACACTTAAAAATCCGCTATTAGCTATTCTATAATT
CTATTCAGTCCATATCTCTGTTACATATTTAATTATCGTAATTCAGGAGTACCTAGTAATCTACA
TATTCACCATATTACAAGAGATTAATCGCCGTATCAACAAGAGAAATTAATAAAATAAAGAATCA
AAACAATACTATAACCCCCAATTCTCATTTTCCAGTTATCTGGGAACTATTCTATATCTTTTTTG
ATCTTGTTTATCAAGCCCCTTACCCATACTCCACAACTTACCTGCTCTTAGAACATCTTCAACTC
ACCGCTTCTCTACTCTTGCCGAAGAGCTAGTTGTCTCAGGATCGA
Found at i:27129 original size:39 final size:39
Alignment explanation
Indices: 27054--27159 Score: 142
Period size: 39 Copynumber: 2.6 Consensus size: 39
27044 TGCCTCATAT
*
27054 TAACCACTATAACCCACAAGTGTGTCTCAAAACTCCCTTTAG
1 TAACCACTATAA-CC-CAA-TATGTCTCAAAACTCCCTTTAG
*
27096 TAACCACT-TCAACCCAATATGTCTCACAACTCCCTTTAG
1 TAACCACTAT-AACCCAATATGTCTCAAAACTCCCTTTAG
*
27135 TAACCACTATAACCCAATGTGTCTC
1 TAACCACTATAACCCAATATGTCTC
27160 CTCTGCCTCA
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
39 42 0.71
40 4 0.07
41 3 0.05
42 10 0.17
ACGTcount: A:0.32, C:0.33, G:0.08, T:0.27
Consensus pattern (39 bp):
TAACCACTATAACCCAATATGTCTCAAAACTCCCTTTAG
Left flanking sequence: Indices 26554 -- 27053
TTTGCGTTTTCCCATTCCAATCGCACCTCCAAAATTTACTGCTTTTTGACGAACTACACTTAAAA
ATCCGCTATTAGCTATTCTATAATTCTATTCAGTCCATATCTCTGTTACATATTTAATTATCGTA
ATTCAGGAGTACCTAGTAATCTACATATTCACCATATTACAAGAGATTAATCGCCGTATCAACAA
GAGAAATTAATAAAATAAAGAATCAAAACAATACTATAACCCCCAATTCTCATTTTCCAGTTATC
TGGGAACTATTCTATATCTTTTTTGATCTTGTTTATCAAGCCCCTTACCCATACTCCACAACTTA
CCTGCTCTTAGAACATCTTCAACTCACCGCTTCTCTACTCTTGCCGAAGAGCTAGTTGTCTCAGG
ATCGAACCCAGAGATTATTGACTTTTACCATTCCACAGTTGCGACTCAAGTCCTTACTGGTTCAT
AGTAACCACAAATTAAACTCACAATGTGTCTCAACTGCCTCATAT
Right flanking sequence: Indices 27160 -- 27659
CTCTGCCTCATACCACTACAACCCAATGTGTCTCACATCAGCCTCATACCACTACAACAAAATTG
TGTCTCTATTCCCATACTTCTATAAATACTAAGCGTTCTTCCAGATCCCCGCCGAGTAGTGCTTG
ACAAACGCCAACGGATCGTCGATCTTGCCGTCCTTGGGGATGGCCACCTCCAGGGCAAACAGCTT
GATGGGCAACACCAAGATGTCCAGCACGAGCTTCGGCTTCTTCAACCCGTGGAAGTCCTTCCACA
GCATCGCCTGGAACACCAGCGAGAGCACCCAGTCGTTGAAGTAGTGGAACACCACGTCGGTCCAG
AGCCCGGCCCCCGTCCACTTGGAGATCTCCAACTGCTTTTCATTGGCGTTCCCGGGCAACGTCAA
CCGGTCGTCGGGGTTGGGCTGGGCCCGCGCCCGCCGCTGGGTCAGCTCGACGATCTGGGCAATGG
CCTCGCGGAGAATAGGGTGGCCGGGCTTCGCCTGGATGACAAACT
Found at i:27183 original size:34 final size:36
Alignment explanation
Indices: 27137--27217 Score: 130
Period size: 34 Copynumber: 2.3 Consensus size: 36
27127 CCCTTTAGTA
* *
27137 ACCACTATAACCCAATGTGTCTC-C-TCTGCCTCAT
1 ACCACTACAACCCAATGTGTCTCACATCAGCCTCAT
27171 ACCACTACAACCCAATGTGTCTCACATCAGCCTCAT
1 ACCACTACAACCCAATGTGTCTCACATCAGCCTCAT
27207 ACCACTACAAC
1 ACCACTACAAC
27218 AAAATTGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
34 22 0.51
35 1 0.02
36 20 0.47
ACGTcount: A:0.30, C:0.40, G:0.07, T:0.23
Consensus pattern (36 bp):
ACCACTACAACCCAATGTGTCTCACATCAGCCTCAT
Left flanking sequence: Indices 26637 -- 27136
TATAATTCTATTCAGTCCATATCTCTGTTACATATTTAATTATCGTAATTCAGGAGTACCTAGTA
ATCTACATATTCACCATATTACAAGAGATTAATCGCCGTATCAACAAGAGAAATTAATAAAATAA
AGAATCAAAACAATACTATAACCCCCAATTCTCATTTTCCAGTTATCTGGGAACTATTCTATATC
TTTTTTGATCTTGTTTATCAAGCCCCTTACCCATACTCCACAACTTACCTGCTCTTAGAACATCT
TCAACTCACCGCTTCTCTACTCTTGCCGAAGAGCTAGTTGTCTCAGGATCGAACCCAGAGATTAT
TGACTTTTACCATTCCACAGTTGCGACTCAAGTCCTTACTGGTTCATAGTAACCACAAATTAAAC
TCACAATGTGTCTCAACTGCCTCATATTAACCACTATAACCCACAAGTGTGTCTCAAAACTCCCT
TTAGTAACCACTTCAACCCAATATGTCTCACAACTCCCTTTAGTA
Right flanking sequence: Indices 27218 -- 27717
AAAATTGTGTCTCTATTCCCATACTTCTATAAATACTAAGCGTTCTTCCAGATCCCCGCCGAGTA
GTGCTTGACAAACGCCAACGGATCGTCGATCTTGCCGTCCTTGGGGATGGCCACCTCCAGGGCAA
ACAGCTTGATGGGCAACACCAAGATGTCCAGCACGAGCTTCGGCTTCTTCAACCCGTGGAAGTCC
TTCCACAGCATCGCCTGGAACACCAGCGAGAGCACCCAGTCGTTGAAGTAGTGGAACACCACGTC
GGTCCAGAGCCCGGCCCCCGTCCACTTGGAGATCTCCAACTGCTTTTCATTGGCGTTCCCGGGCA
ACGTCAACCGGTCGTCGGGGTTGGGCTGGGCCCGCGCCCGCCGCTGGGTCAGCTCGACGATCTGG
GCAATGGCCTCGCGGAGAATAGGGTGGCCGGGCTTCGCCTGGATGACAAACTGGCCAAACTGGAG
CCGCCGGTGGGTGTCGTCGCGCCAGTTGGCCGCGTTGTTCTCGGA
Found at i:29290 original size:20 final size:19
Alignment explanation
Indices: 29257--29339 Score: 112
Period size: 19 Copynumber: 4.3 Consensus size: 19
29247 TGAGCCAGTG
29257 CCAACCGTTTGAACCGATA
1 CCAACCGTTTGAACCGATA
* * *
29276 ACAACCCGGTTGAACCAATA
1 CCAA-CCGTTTGAACCGATA
29296 CCAACCGTTTGAACCGATA
1 CCAACCGTTTGAACCGATA
* *
29315 CCAACCGTTTGAACCAAAA
1 CCAACCGTTTGAACCGATA
29334 CCAACC
1 CCAACC
29340 CGATTGGATG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
19 39 0.71
20 16 0.29
ACGTcount: A:0.36, C:0.34, G:0.13, T:0.17
Consensus pattern (19 bp):
CCAACCGTTTGAACCGATA
Left flanking sequence: Indices 28757 -- 29256
GGGTTTGGCGTTTTCTAGTGGCCGATCCGGCTGGAACGCGTCTTTTACGGCGTTTAGCGAGCTAC
AACGGCCATCTTCTCGTAGTACTGTATTGTGGCTGGTAGATGAAATTCGAGTAAAAAGACTGGAA
TGTGACGAGAAGGCCTAGACCAAACGTTGTAGCGGTAGACGAAAGGAAGGCAGGCTAAAAGACAA
AAACGAAGCTTATAAGTGTTTCTACCCGGTTTGGAAGACCCCTTTTTGAGCACCCTATATATAGT
CCGGCTTTGTGGCTCGCCAAGACTAGGTTGGTCGAGATGGCTTAGCGGTTTACGGAGGTGGTTGG
AACCCCTGGGCGGTCACGGCAACAATGGGTGGCGATGTGCTTGTTCACAATAGGGAGGGTATATA
GGCGTGGCTAAGGATATTAGCCGAGTGGTAGAGCGAAATACGAGATCTGGGAGAAGGAAGTGTGA
ACCGAGCAATACTTGATTGAGCGATTCAAACCGTTTGAGCCAGTG
Right flanking sequence: Indices 29340 -- 29839
CGATTGGATGTGCAGTAGGGATACCACCAAGTCCCAAATCCAATCCACTAAACCAACCAGATGCA
CTCTATTTCGTATACTATTAGACCAACCAAATGCTCTATTCGTATACTACTGAACCAACCAGAAT
CTCTTCTTTCATATACTACTAAACCAACCAAATGCTCTATTCGTATACTACTCAACCCATATGCT
CTTTCATTCATATACTACTAATCCAACCAAATGCTCTCTATTCGTTTACTACCCCTACACTACTC
AAACTTGATCTCATTGACAAGAGTCCCAATCGACTCGATCTCCACTTCGACCTTGTCGCCGTCTC
TCAACCACTTGGGCGGGCTGAAAGACATGCCCACGCCCTCGGGAGTACCGGTCATGATCACCGTG
CCCTGCTCGAGCGTCGTCCCCTGCGACAAAAACTCGATGATCTGGGCCACCGAGAACAACAAGTC
CAGGGTCGAGCTCAGCTGGCGCACCTCACCGTTGACTCTGGTCTC
Found at i:29311 original size:39 final size:38
Alignment explanation
Indices: 29257--29339 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 38
29247 TGAGCCAGTG
*
29257 CCAACCGTTTGAACCGATAACAACCCGGTTGAACCAATA
1 CCAACCGTTTGAACCGATAACAA-CCGGTTGAACCAAAA
* *
29296 CCAACCGTTTGAACCGATACCAACCGTTTGAACCAAAA
1 CCAACCGTTTGAACCGATAACAACCGGTTGAACCAAAA
29334 CCAACC
1 CCAACC
29340 CGATTGGATG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 19 0.46
39 22 0.54
ACGTcount: A:0.36, C:0.34, G:0.13, T:0.17
Consensus pattern (38 bp):
CCAACCGTTTGAACCGATAACAACCGGTTGAACCAAAA
Left flanking sequence: Indices 28757 -- 29256
GGGTTTGGCGTTTTCTAGTGGCCGATCCGGCTGGAACGCGTCTTTTACGGCGTTTAGCGAGCTAC
AACGGCCATCTTCTCGTAGTACTGTATTGTGGCTGGTAGATGAAATTCGAGTAAAAAGACTGGAA
TGTGACGAGAAGGCCTAGACCAAACGTTGTAGCGGTAGACGAAAGGAAGGCAGGCTAAAAGACAA
AAACGAAGCTTATAAGTGTTTCTACCCGGTTTGGAAGACCCCTTTTTGAGCACCCTATATATAGT
CCGGCTTTGTGGCTCGCCAAGACTAGGTTGGTCGAGATGGCTTAGCGGTTTACGGAGGTGGTTGG
AACCCCTGGGCGGTCACGGCAACAATGGGTGGCGATGTGCTTGTTCACAATAGGGAGGGTATATA
GGCGTGGCTAAGGATATTAGCCGAGTGGTAGAGCGAAATACGAGATCTGGGAGAAGGAAGTGTGA
ACCGAGCAATACTTGATTGAGCGATTCAAACCGTTTGAGCCAGTG
Right flanking sequence: Indices 29340 -- 29839
CGATTGGATGTGCAGTAGGGATACCACCAAGTCCCAAATCCAATCCACTAAACCAACCAGATGCA
CTCTATTTCGTATACTATTAGACCAACCAAATGCTCTATTCGTATACTACTGAACCAACCAGAAT
CTCTTCTTTCATATACTACTAAACCAACCAAATGCTCTATTCGTATACTACTCAACCCATATGCT
CTTTCATTCATATACTACTAATCCAACCAAATGCTCTCTATTCGTTTACTACCCCTACACTACTC
AAACTTGATCTCATTGACAAGAGTCCCAATCGACTCGATCTCCACTTCGACCTTGTCGCCGTCTC
TCAACCACTTGGGCGGGCTGAAAGACATGCCCACGCCCTCGGGAGTACCGGTCATGATCACCGTG
CCCTGCTCGAGCGTCGTCCCCTGCGACAAAAACTCGATGATCTGGGCCACCGAGAACAACAAGTC
CAGGGTCGAGCTCAGCTGGCGCACCTCACCGTTGACTCTGGTCTC
Found at i:29450 original size:32 final size:32
Alignment explanation
Indices: 29386--29586 Score: 146
Period size: 32 Copynumber: 6.1 Consensus size: 32
29376 AATCCAATCC
* *
29386 ACTAAACCAACCAGATGCACTCTATTTCGTATACT
1 ACTAGACCAACCAAATG--CTCTA-TTCGTATACT
*
29421 ATTAGACCAACCAAATGCTCTATTCGTATACT
1 ACTAGACCAACCAAATGCTCTATTCGTATACT
* *
29453 ACT-GAACCAACCAGAAT-CTCTTCTTTCATATACT
1 ACTAG-ACCAACCA-AATGCTC-T-ATTCGTATACT
*
29487 ACTAAACCAACCAAATGCTCTATTCGTATACT
1 ACTAGACCAACCAAATGCTCTATTCGTATACT
* *
29519 ACT----CAACCCATATGCTCTTTCATTCATATACT
1 ACTAGACCAA-CCAAATGCTC--T-ATTCGTATACT
*
29551 ACTA-ATCCAACCAAATGCTCTCTATTCGTTTACT
1 ACTAGA-CCAACCAAATG--CTCTATTCGTATACT
29585 AC
1 AC
29587 CCCTACACTA
Statistics
Matches: 136, Mismatches: 14, Indels: 33
0.74 0.08 0.18
Matches are distributed among these distances:
28 3 0.02
29 9 0.07
31 2 0.01
32 48 0.35
33 13 0.10
34 34 0.25
35 21 0.15
36 3 0.02
37 3 0.02
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.32
Consensus pattern (32 bp):
ACTAGACCAACCAAATGCTCTATTCGTATACT
Left flanking sequence: Indices 28886 -- 29385
ATGTGACGAGAAGGCCTAGACCAAACGTTGTAGCGGTAGACGAAAGGAAGGCAGGCTAAAAGACA
AAAACGAAGCTTATAAGTGTTTCTACCCGGTTTGGAAGACCCCTTTTTGAGCACCCTATATATAG
TCCGGCTTTGTGGCTCGCCAAGACTAGGTTGGTCGAGATGGCTTAGCGGTTTACGGAGGTGGTTG
GAACCCCTGGGCGGTCACGGCAACAATGGGTGGCGATGTGCTTGTTCACAATAGGGAGGGTATAT
AGGCGTGGCTAAGGATATTAGCCGAGTGGTAGAGCGAAATACGAGATCTGGGAGAAGGAAGTGTG
AACCGAGCAATACTTGATTGAGCGATTCAAACCGTTTGAGCCAGTGCCAACCGTTTGAACCGATA
ACAACCCGGTTGAACCAATACCAACCGTTTGAACCGATACCAACCGTTTGAACCAAAACCAACCC
GATTGGATGTGCAGTAGGGATACCACCAAGTCCCAAATCCAATCC
Right flanking sequence: Indices 29587 -- 30086
CCCTACACTACTCAAACTTGATCTCATTGACAAGAGTCCCAATCGACTCGATCTCCACTTCGACC
TTGTCGCCGTCTCTCAACCACTTGGGCGGGCTGAAAGACATGCCCACGCCCTCGGGAGTACCGGT
CATGATCACCGTGCCCTGCTCGAGCGTCGTCCCCTGCGACAAAAACTCGATGATCTGGGCCACCG
AGAACAACAAGTCCAGGGTCGAGCTCAGCTGGCGCACCTCACCGTTGACTCTGGTCTCGATCTTG
AGGTTCAGCGAGTCAATGCCCCGCACCAACTGCGGCCCCAACGGAGCGTAGTTGTCAAACAGCTT
CGAGAAGTTCCACTGGGGGACCCCGCCCGCGTGGGCCGGGTCCATCTGCCAGGTGCGGGCCAGGA
TGTCGTTGCCCACCGTGTAGGCCAACACGTGGTCCAACGCGTCCGCAGCCTTGATGTTCTTGCCC
GTTTTGCCAATCACCACGCAGAGCTCGCCCTCGTAGTCCACCTGG
Found at i:29571 original size:64 final size:65
Alignment explanation
Indices: 29415--29586 Score: 215
Period size: 66 Copynumber: 2.6 Consensus size: 65
29405 CTCTATTTCG
* * * *
29415 TATACTATTAGACCAACCAAATGCTCTATTCGTATACTACTGAACCAACCAGAATCTCTTCTTTC
1 TATACTACTAAACCAACCAAATGCTCTATTCGTATACTACTCAACC-ACCAGAATCTCTTCATTC
29480 A
65 A
*
29481 TATACTACTAAACCAACCAAATGCTCTATTCGTATACTACTCAA-C-CCA-TATGCTCTTTCATT
1 TATACTACTAAACCAACCAAATGCTCTATTCGTATACTACTCAACCACCAGAAT-CTC-TTCATT
29543 CA
64 CA
* *
29545 TATACTACTAATCCAACCAAATGCTCTCTATTCGTTTACTAC
1 TATACTACTAAACCAACCAAATG--CTCTATTCGTATACTAC
29587 CCCTACACTA
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
62 2 0.02
63 6 0.06
64 29 0.31
65 1 0.01
66 57 0.60
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (65 bp):
TATACTACTAAACCAACCAAATGCTCTATTCGTATACTACTCAACCACCAGAATCTCTTCATTCA
Left flanking sequence: Indices 28915 -- 29414
GTAGCGGTAGACGAAAGGAAGGCAGGCTAAAAGACAAAAACGAAGCTTATAAGTGTTTCTACCCG
GTTTGGAAGACCCCTTTTTGAGCACCCTATATATAGTCCGGCTTTGTGGCTCGCCAAGACTAGGT
TGGTCGAGATGGCTTAGCGGTTTACGGAGGTGGTTGGAACCCCTGGGCGGTCACGGCAACAATGG
GTGGCGATGTGCTTGTTCACAATAGGGAGGGTATATAGGCGTGGCTAAGGATATTAGCCGAGTGG
TAGAGCGAAATACGAGATCTGGGAGAAGGAAGTGTGAACCGAGCAATACTTGATTGAGCGATTCA
AACCGTTTGAGCCAGTGCCAACCGTTTGAACCGATAACAACCCGGTTGAACCAATACCAACCGTT
TGAACCGATACCAACCGTTTGAACCAAAACCAACCCGATTGGATGTGCAGTAGGGATACCACCAA
GTCCCAAATCCAATCCACTAAACCAACCAGATGCACTCTATTTCG
Right flanking sequence: Indices 29587 -- 30086
CCCTACACTACTCAAACTTGATCTCATTGACAAGAGTCCCAATCGACTCGATCTCCACTTCGACC
TTGTCGCCGTCTCTCAACCACTTGGGCGGGCTGAAAGACATGCCCACGCCCTCGGGAGTACCGGT
CATGATCACCGTGCCCTGCTCGAGCGTCGTCCCCTGCGACAAAAACTCGATGATCTGGGCCACCG
AGAACAACAAGTCCAGGGTCGAGCTCAGCTGGCGCACCTCACCGTTGACTCTGGTCTCGATCTTG
AGGTTCAGCGAGTCAATGCCCCGCACCAACTGCGGCCCCAACGGAGCGTAGTTGTCAAACAGCTT
CGAGAAGTTCCACTGGGGGACCCCGCCCGCGTGGGCCGGGTCCATCTGCCAGGTGCGGGCCAGGA
TGTCGTTGCCCACCGTGTAGGCCAACACGTGGTCCAACGCGTCCGCAGCCTTGATGTTCTTGCCC
GTTTTGCCAATCACCACGCAGAGCTCGCCCTCGTAGTCCACCTGG
Found at i:33976 original size:31 final size:31
Alignment explanation
Indices: 33896--34060 Score: 201
Period size: 31 Copynumber: 5.4 Consensus size: 31
33886 GTACATGCGA
* *
33896 ATTGGCCACTGTCGAAGTAGCCAATGTGACC
1 ATTGGCCACTGTAGAAGTAGCCCATGTGACC
* * *
33927 ATTGG-CACTGCCAG-AGTAGCCCATGCGAAC
1 ATTGGCCACTG-TAGAAGTAGCCCATGTGACC
33957 ATTGGCCACTGTAGAAGTAGCCCATGTGACC
1 ATTGGCCACTGTAGAAGTAGCCCATGTGACC
*
33988 GTTGGCCACTGTAGAAGTAGCCCATGTGACC
1 ATTGGCCACTGTAGAAGTAGCCCATGTGACC
* * * *
34019 ATTGACCACTGTCGAACTAACCCATGTGACC
1 ATTGGCCACTGTAGAAGTAGCCCATGTGACC
*
34050 ATT-ACCACTGT
1 ATTGGCCACTGT
34061 CGGGCCCATT
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
30 33 0.28
31 84 0.72
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (31 bp):
ATTGGCCACTGTAGAAGTAGCCCATGTGACC
Left flanking sequence: Indices 33396 -- 33895
GTGAGAAGAGGTTAAGGCACTCGGTGCTTGATTTAGCGTTTGAGATTGTTTTAGAGCTCTATTTC
AGGGTTAGGATTTTCACCTGCCTTTTTGGTACCTGACTAACAATAGGACAATAGCACTGGGACAT
GATTGCTGGCGGCACCTGCGGGTTCAGATATGCTTTTGACTACGCTGGATGGGGTCACGCCAGCG
CAAACGGAGTTATGGAGGAGATAGGAGGAAGGGGTGTGGAAGAGACGGGTGAGATACTGTAGTGG
GAGCAAAAAGGCGTATCGGGGTTAGAACATCGATAAGAGATAAGTGCCTTGAAATTGGAGGAAGC
TGGATACGAAACATGGGCCAATTCACGGAAGTTCCCAGCCAAGATGATTAGTTAATCAAGCGTAG
TCAGGCGGGAGATTGTAAGTGGTCAGGCGGGGGAAACCAAGAGCGTGTATTTACGAAACGTCGAG
CATGTTAGACGACGTTGCAAACACCTAAAAATAGAGTACATGCGA
Right flanking sequence: Indices 34061 -- 34560
CGGGCCCATTCGACCATTGACATTGTCGGGCCCATGTAATCATCGGCATTGTCGGCCTGAGCCAT
TTCGTATTTCGTCGGCGTTTATTGTGTGTCCAGGGACCGATGCCACAAACAGCATGGGTATTATT
CAGACACCAGACACAACTCAAAAATTCTAAGCTACTCTATTTCGTCTCCGCACGCTGCACCCCGG
TGGCCAGGGCCTTGGAGTCGTTCAAGTTGATCGGGTTGATCTCCTCCTCGAGCACCATCAGCTCG
GGCCGCAGCATGGGCAGGTACTGGATGCGCTCGTTCTGGAGCTCGGCAATCTCCTTCTTCAACTT
GGCCACCTCCTTCTCAAACCGCTTGCCAAACACATCGATGTAGTAGGTGGCCCCGTTGTAGCAGG
CCCAGGCATAGACAAAAAACACAAACAACCCACACACGTGCTTGTACTTGAACCAGATGGGACAC
GGCAACATCGTGAGCATCTGGTAGCCAAACTGGATCAACGTGAAC
Found at i:34075 original size:26 final size:26
Alignment explanation
Indices: 34046--34095 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34036 TAACCCATGT
34046 GACCATT-ACCACTGTCGGGCCCATTC
1 GACCATTGA-CACTGTCGGGCCCATTC
*
34072 GACCATTGACATTGTCGGGCCCAT
1 GACCATTGACACTGTCGGGCCCAT
34096 GTAATCATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.20, C:0.34, G:0.22, T:0.24
Consensus pattern (26 bp):
GACCATTGACACTGTCGGGCCCATTC
Left flanking sequence: Indices 33546 -- 34045
GGTTCAGATATGCTTTTGACTACGCTGGATGGGGTCACGCCAGCGCAAACGGAGTTATGGAGGAG
ATAGGAGGAAGGGGTGTGGAAGAGACGGGTGAGATACTGTAGTGGGAGCAAAAAGGCGTATCGGG
GTTAGAACATCGATAAGAGATAAGTGCCTTGAAATTGGAGGAAGCTGGATACGAAACATGGGCCA
ATTCACGGAAGTTCCCAGCCAAGATGATTAGTTAATCAAGCGTAGTCAGGCGGGAGATTGTAAGT
GGTCAGGCGGGGGAAACCAAGAGCGTGTATTTACGAAACGTCGAGCATGTTAGACGACGTTGCAA
ACACCTAAAAATAGAGTACATGCGAATTGGCCACTGTCGAAGTAGCCAATGTGACCATTGGCACT
GCCAGAGTAGCCCATGCGAACATTGGCCACTGTAGAAGTAGCCCATGTGACCGTTGGCCACTGTA
GAAGTAGCCCATGTGACCATTGACCACTGTCGAACTAACCCATGT
Right flanking sequence: Indices 34096 -- 34595
GTAATCATCGGCATTGTCGGCCTGAGCCATTTCGTATTTCGTCGGCGTTTATTGTGTGTCCAGGG
ACCGATGCCACAAACAGCATGGGTATTATTCAGACACCAGACACAACTCAAAAATTCTAAGCTAC
TCTATTTCGTCTCCGCACGCTGCACCCCGGTGGCCAGGGCCTTGGAGTCGTTCAAGTTGATCGGG
TTGATCTCCTCCTCGAGCACCATCAGCTCGGGCCGCAGCATGGGCAGGTACTGGATGCGCTCGTT
CTGGAGCTCGGCAATCTCCTTCTTCAACTTGGCCACCTCCTTCTCAAACCGCTTGCCAAACACAT
CGATGTAGTAGGTGGCCCCGTTGTAGCAGGCCCAGGCATAGACAAAAAACACAAACAACCCACAC
ACGTGCTTGTACTTGAACCAGATGGGACACGGCAACATCGTGAGCATCTGGTAGCCAAACTGGAT
CAACGTGAACGCGCCAATCTGCATCCAGTTGTACGGCAACCCGTT
Found at i:36370 original size:19 final size:19
Alignment explanation
Indices: 36346--36411 Score: 89
Period size: 19 Copynumber: 3.4 Consensus size: 19
36336 TTTTATCTTC
36346 CTTCTTCACATTCTCTCTA
1 CTTCTTCACATTCTCTCTA
*
36365 CTTCTTCATCTTTC-CTCTA
1 CTTCTTCA-CATTCTCTCTA
*
36384 CTTCTTCATATTCTCTCTA
1 CTTCTTCACATTCTCTCTA
36403 CTTTCTTCA
1 C-TTCTTCA
36412 TTCTACCTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 3 0.07
19 27 0.66
20 11 0.27
ACGTcount: A:0.14, C:0.35, G:0.00, T:0.52
Consensus pattern (19 bp):
CTTCTTCACATTCTCTCTA
Left flanking sequence: Indices 35846 -- 36345
TTGTTTTGGCCAGCGCAGGCCTCGCTTAGCTCCGGGGTCACTCAGAAAAAGTCCGAGGTAACAAT
GACGATGAGATGGCGATGGGGAAGGACAACAAAGAAAGGGAGTAGAAGTAAGGGACTAGAAAGTG
AGGGAATTGAGGCTAAGAGCCGTCTGGAGCTCCATTGGCCCTCCGTTTACTCGTCTGTTGCTTGC
TTCTCGACATACGTCACATGTAGCGTACGTTCTTTGCATACGCACGGCTGGGTCCGATGACAGCC
GTCACGGGCGCGACATGGCATGTGGACACGCCCAAAGTCTACCCCATTGCCACAAAAGTGTATTC
ATGACCCCGACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAAT
GGCTGCAACTGCATGCGAAAGCAAAGATAATGTGAGATAGTGTATTGCAGCCAGATAACCAGCCG
GGCAATTCCAGCTAGCTATAGCTTGAGGTGTGACTTTTTATCTTC
Right flanking sequence: Indices 36412 -- 36911
TTCTACCTCTACTGTCTTCTTCACCCTTTTCAATTGGTTTTTGAACAAACTTACCGTAGTTTCAA
ACTATTTCTTCGATATTTGGCAAACAGTCCAAGTGGGCTAAAACAATCTGTATTCCTTTTCATAT
CAGATATATCTTCATTTTCTAAATGCAAAAACCCATTTTTATATTTAAGGTCAACCGTATTATTG
AAATTGGATTTATATGTCATTCCTCTACTTCTTCATCTTTTCTCTACTGTCATCTTTATCTTCCC
CTACTTCCTTCTTCCCTTTGCTCTACTTCTTCATCTCCTACATCTCTCCATTATAACCTTCATTA
CTAGTCATTCTATGCATCATTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGACACCAAGT
GGCGCTGCATCGCCTCAAAATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGC
TCCTGGTTGTAGTTGTAGCACTCCAAGATCGCATCGCACACCCGG
Found at i:36397 original size:38 final size:39
Alignment explanation
Indices: 36346--36430 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
36336 TTTTATCTTC
*
36346 CTTCTTCACATTCTCTCTAC-TTCTTCA-TCTTTCCTCTA
1 CTTCTTCACATTCTCTCTACTTTCTTCATTC-TACCTCTA
*
36384 CTTCTTCATATTCTCTCTACTTTCTTCATTCTACCTCTA
1 CTTCTTCACATTCTCTCTACTTTCTTCATTCTACCTCTA
36423 CTGTCTTC
1 CT-TCTTC
36431 TTCACCCTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
38 19 0.45
39 16 0.38
40 7 0.17
ACGTcount: A:0.13, C:0.35, G:0.01, T:0.51
Consensus pattern (39 bp):
CTTCTTCACATTCTCTCTACTTTCTTCATTCTACCTCTA
Left flanking sequence: Indices 35846 -- 36345
TTGTTTTGGCCAGCGCAGGCCTCGCTTAGCTCCGGGGTCACTCAGAAAAAGTCCGAGGTAACAAT
GACGATGAGATGGCGATGGGGAAGGACAACAAAGAAAGGGAGTAGAAGTAAGGGACTAGAAAGTG
AGGGAATTGAGGCTAAGAGCCGTCTGGAGCTCCATTGGCCCTCCGTTTACTCGTCTGTTGCTTGC
TTCTCGACATACGTCACATGTAGCGTACGTTCTTTGCATACGCACGGCTGGGTCCGATGACAGCC
GTCACGGGCGCGACATGGCATGTGGACACGCCCAAAGTCTACCCCATTGCCACAAAAGTGTATTC
ATGACCCCGACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAAT
GGCTGCAACTGCATGCGAAAGCAAAGATAATGTGAGATAGTGTATTGCAGCCAGATAACCAGCCG
GGCAATTCCAGCTAGCTATAGCTTGAGGTGTGACTTTTTATCTTC
Right flanking sequence: Indices 36431 -- 36930
TTCACCCTTTTCAATTGGTTTTTGAACAAACTTACCGTAGTTTCAAACTATTTCTTCGATATTTG
GCAAACAGTCCAAGTGGGCTAAAACAATCTGTATTCCTTTTCATATCAGATATATCTTCATTTTC
TAAATGCAAAAACCCATTTTTATATTTAAGGTCAACCGTATTATTGAAATTGGATTTATATGTCA
TTCCTCTACTTCTTCATCTTTTCTCTACTGTCATCTTTATCTTCCCCTACTTCCTTCTTCCCTTT
GCTCTACTTCTTCATCTCCTACATCTCTCCATTATAACCTTCATTACTAGTCATTCTATGCATCA
TTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGACACCAAGTGGCGCTGCATCGCCTCAAA
ATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGCTCCTGGTTGTAGTTGTAGC
ACTCCAAGATCGCATCGCACACCCGGTGCACCAGCTCGAGCAGCA
Found at i:36421 original size:20 final size:18
Alignment explanation
Indices: 36354--36430 Score: 77
Period size: 19 Copynumber: 4.1 Consensus size: 18
36344 TCCTTCTTCA
36354 CATTCT-CTCTACTTCTT
1 CATTCTCCTCTACTTCTT
*
36371 CATCTTTCCTCTACTTCTT
1 CAT-TCTCCTCTACTTCTT
36390 CATAT-TCTCTCTACTTTCTT
1 CAT-TCTC-CTCTAC-TTCTT
36410 CATTCTACCTCTACTGTCTT
1 CATTCT-CCTCTACT-TCTT
36430 C
1 C
36431 TTCACCCTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.06
18 4 0.08
19 23 0.45
20 20 0.39
21 1 0.02
ACGTcount: A:0.13, C:0.35, G:0.01, T:0.51
Consensus pattern (18 bp):
CATTCTCCTCTACTTCTT
Left flanking sequence: Indices 35854 -- 36353
GCCAGCGCAGGCCTCGCTTAGCTCCGGGGTCACTCAGAAAAAGTCCGAGGTAACAATGACGATGA
GATGGCGATGGGGAAGGACAACAAAGAAAGGGAGTAGAAGTAAGGGACTAGAAAGTGAGGGAATT
GAGGCTAAGAGCCGTCTGGAGCTCCATTGGCCCTCCGTTTACTCGTCTGTTGCTTGCTTCTCGAC
ATACGTCACATGTAGCGTACGTTCTTTGCATACGCACGGCTGGGTCCGATGACAGCCGTCACGGG
CGCGACATGGCATGTGGACACGCCCAAAGTCTACCCCATTGCCACAAAAGTGTATTCATGACCCC
GACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAATGGCTGCAA
CTGCATGCGAAAGCAAAGATAATGTGAGATAGTGTATTGCAGCCAGATAACCAGCCGGGCAATTC
CAGCTAGCTATAGCTTGAGGTGTGACTTTTTATCTTCCTTCTTCA
Right flanking sequence: Indices 36431 -- 36930
TTCACCCTTTTCAATTGGTTTTTGAACAAACTTACCGTAGTTTCAAACTATTTCTTCGATATTTG
GCAAACAGTCCAAGTGGGCTAAAACAATCTGTATTCCTTTTCATATCAGATATATCTTCATTTTC
TAAATGCAAAAACCCATTTTTATATTTAAGGTCAACCGTATTATTGAAATTGGATTTATATGTCA
TTCCTCTACTTCTTCATCTTTTCTCTACTGTCATCTTTATCTTCCCCTACTTCCTTCTTCCCTTT
GCTCTACTTCTTCATCTCCTACATCTCTCCATTATAACCTTCATTACTAGTCATTCTATGCATCA
TTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGACACCAAGTGGCGCTGCATCGCCTCAAA
ATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGCTCCTGGTTGTAGTTGTAGC
ACTCCAAGATCGCATCGCACACCCGGTGCACCAGCTCGAGCAGCA
Found at i:38934 original size:21 final size:19
Alignment explanation
Indices: 38887--38929 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
38877 ATCATCACCA
*
38887 GCAATTGGCTGGGGGGACC
1 GCAAGTGGCTGGGGGGACC
38906 GCAAGTGGCTGGGGGGACC
1 GCAAGTGGCTGGGGGGACC
38925 GCAAG
1 GCAAG
38930 CGTGGTGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.49, T:0.12
Consensus pattern (19 bp):
GCAAGTGGCTGGGGGGACC
Left flanking sequence: Indices 38387 -- 38886
CCCTTCTCCTTCGATAACCGAAGTTACCCTACCCCTCCCACGGCCAATGTCGGACCGCGCAGACA
CACGGAGCCGCCGAGAAAAACCGAGGCGACGGGTAGCCTTCGTAGAGCAAACTGACTCACCAGTC
CACCACCAAACTTACAGCCACTGGTGCTCCCTCCTCGCTCGTCCCTCCGCGTATTTTGACGGAAA
ACGGTCCCCGAAAAACGGTCAGGCTGCGTGCGTAGCTCAGGCCCTGGAGGCTGACGGGGCTTACC
ACGAGTGACTCTTGATTACAAACAGCCGTTGCGATCGCGTGTTCTCGCCGTGGGCTCACCCAACA
GCCCAACACCCTGGGTCGCCTTGGTTGCCGTGGCTCTTAACGGCAACCCTATCGCTTTTTTTAGC
AATTTTTCCGAAGAATAGGGGCGGCCGCCTGTTGCGAGCGCGGGAGCAAGGGTCCCGTTGCGAGC
CCGCGTCAGGTACCCAAACAGGCTGGGAGGGCGCGATCATCACCA
Right flanking sequence: Indices 38930 -- 39429
CGTGGTGGGTATTTAAGTAGTGGGGCCGCGTAGGTGGCACGCGACATGAGTAACAAACCCGTTTC
AGATCCGCCTCGCAATTGGCTCAATGCCAAGCCCGTACCTACGAAGCCTCGGAAACAGAGCGTGG
GTGAGCTGTGGGCCAGTTCTGCCTGTGGTTCGCCTCCAAGTGTGTTGCCTTTTGGCAACCGGTTT
TAAAGTAATGGATAATATGAATGTATAAATGTATGAATGTATGAATGTACGATTGAATGAATGTA
CGAATTTTGATTATCTAGTTCTTGGAATTGGAGACAATTGAAGTGCTAGGGCTCTGAACTTTTGG
GCATTGTAAAGTATAAGTGTGTGTGGTCAGTAGTACTGACTAAAACCCATTAAGCACATTAATGC
CTCGTAACTCTTGTTTTGCGAGGTCTCAAGAGCCTCAATTTTTAGCCTGGCTTTGATCCCGTACA
GGGCACAATGGTTCGACGAGTATGGCCACTTTCCCCGTACGACGA
Found at i:39157 original size:8 final size:8
Alignment explanation
Indices: 39140--39194 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
39130 TAATGGATAA
39140 TATGAATG
1 TATGAATG
*
39148 TATAAATG
1 TATGAATG
39156 TATGAATG
1 TATGAATG
39164 TATGAATG
1 TATGAATG
* *
39172 TACGATTG
1 TATGAATG
*
39180 AATGAATG
1 TATGAATG
*
39188 TACGAAT
1 TATGAAT
39195 TTTGATTATC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.35
Consensus pattern (8 bp):
TATGAATG
Left flanking sequence: Indices 38640 -- 39139
GCTTACCACGAGTGACTCTTGATTACAAACAGCCGTTGCGATCGCGTGTTCTCGCCGTGGGCTCA
CCCAACAGCCCAACACCCTGGGTCGCCTTGGTTGCCGTGGCTCTTAACGGCAACCCTATCGCTTT
TTTTAGCAATTTTTCCGAAGAATAGGGGCGGCCGCCTGTTGCGAGCGCGGGAGCAAGGGTCCCGT
TGCGAGCCCGCGTCAGGTACCCAAACAGGCTGGGAGGGCGCGATCATCACCAGCAATTGGCTGGG
GGGACCGCAAGTGGCTGGGGGGACCGCAAGCGTGGTGGGTATTTAAGTAGTGGGGCCGCGTAGGT
GGCACGCGACATGAGTAACAAACCCGTTTCAGATCCGCCTCGCAATTGGCTCAATGCCAAGCCCG
TACCTACGAAGCCTCGGAAACAGAGCGTGGGTGAGCTGTGGGCCAGTTCTGCCTGTGGTTCGCCT
CCAAGTGTGTTGCCTTTTGGCAACCGGTTTTAAAGTAATGGATAA
Right flanking sequence: Indices 39195 -- 39694
TTTGATTATCTAGTTCTTGGAATTGGAGACAATTGAAGTGCTAGGGCTCTGAACTTTTGGGCATT
GTAAAGTATAAGTGTGTGTGGTCAGTAGTACTGACTAAAACCCATTAAGCACATTAATGCCTCGT
AACTCTTGTTTTGCGAGGTCTCAAGAGCCTCAATTTTTAGCCTGGCTTTGATCCCGTACAGGGCA
CAATGGTTCGACGAGTATGGCCACTTTCCCCGTACGACGAGTGGCCATACTTTCCCCGTAAGACG
AAAATGGCCATAAATTCCACGTCCCACTGAGTTCAGGCAATGGCCAAGACACAAACGAGCTGACA
CCTACCCAAAAGCAGCCTCTACCTACGACCACAACCTTGACTCTTTCCACGATCTCCACCAGAAG
CAGTAGCCATATTCACATACTAGGCTCTATGTACATACCCTCTTCTACACCGCACCCCCTCCCAC
GCCTTACCATTCAACCACCTCAACCTCACTCTTTATTGTCTATAA
Found at i:39472 original size:28 final size:26
Alignment explanation
Indices: 39415--39472 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
39405 TATGGCCACT
* * **
39415 TTCCCCGTACGACGAGTGGCCATACT
1 TTCCCCGTAAGACGAATGGCCATAAA
39441 TTCCCCGTAAGACGAAAATGGCCATAAA
1 TTCCCCGTAAGACG--AATGGCCATAAA
39469 TTCC
1 TTCC
39473 ACGTCCCACT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 13 0.50
28 13 0.50
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (26 bp):
TTCCCCGTAAGACGAATGGCCATAAA
Left flanking sequence: Indices 38915 -- 39414
TGGGGGGACCGCAAGCGTGGTGGGTATTTAAGTAGTGGGGCCGCGTAGGTGGCACGCGACATGAG
TAACAAACCCGTTTCAGATCCGCCTCGCAATTGGCTCAATGCCAAGCCCGTACCTACGAAGCCTC
GGAAACAGAGCGTGGGTGAGCTGTGGGCCAGTTCTGCCTGTGGTTCGCCTCCAAGTGTGTTGCCT
TTTGGCAACCGGTTTTAAAGTAATGGATAATATGAATGTATAAATGTATGAATGTATGAATGTAC
GATTGAATGAATGTACGAATTTTGATTATCTAGTTCTTGGAATTGGAGACAATTGAAGTGCTAGG
GCTCTGAACTTTTGGGCATTGTAAAGTATAAGTGTGTGTGGTCAGTAGTACTGACTAAAACCCAT
TAAGCACATTAATGCCTCGTAACTCTTGTTTTGCGAGGTCTCAAGAGCCTCAATTTTTAGCCTGG
CTTTGATCCCGTACAGGGCACAATGGTTCGACGAGTATGGCCACT
Right flanking sequence: Indices 39473 -- 39972
ACGTCCCACTGAGTTCAGGCAATGGCCAAGACACAAACGAGCTGACACCTACCCAAAAGCAGCCT
CTACCTACGACCACAACCTTGACTCTTTCCACGATCTCCACCAGAAGCAGTAGCCATATTCACAT
ACTAGGCTCTATGTACATACCCTCTTCTACACCGCACCCCCTCCCACGCCTTACCATTCAACCAC
CTCAACCTCACTCTTTATTGTCTATAAATCCTCTTTCTCCTCCTTGCCAAACGGCGCAAAGTCGC
TCCGAATGTCATGCTTCCACCCCGAGTTCACACTGAAATTGCGGCTGTGCAGCGCCGTCCGCTGC
TCCTCGCTGGCCCAGATGTTCGTCAGACCGGTGTTGACCGCCGAATCGTTCCAGAGGTGCGGTTG
TTGCGGCACCGGGGTCAGCAGCACCGAGTGCGACGGCAGAAGCGGCGTCCCGGGCAACCGCGGCA
GGCTGTACGAGTAGAGCAACGAGTTGTAGTCGTTGATCTGGAACT
Found at i:40577 original size:12 final size:12
Alignment explanation
Indices: 40560--40634 Score: 51
Period size: 12 Copynumber: 5.8 Consensus size: 12
40550 CAGCGACTTT
40560 GGCTCAAACTGG
1 GGCTCAAACTGG
**
40572 GGCTCAAACTTT
1 GGCTCAAACTGG
* *
40584 GGCTCATACTGCTTA
1 GGCTCAAACTG---G
40599 GGCTCAAACTGGTTG
1 GGCTCAAACT-G--G
*
40614 GGCTCAAACTTG
1 GGCTCAAACTGG
40626 GGCTCAAAC
1 GGCTCAAAC
40635 GACTTTGGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
12 29 0.57
15 21 0.41
16 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (12 bp):
GGCTCAAACTGG
Left flanking sequence: Indices 40060 -- 40559
GGTCCTGGTCCAACTGGATCAGGTCGAGCAGGTCCGGGATGGGCTGGGCTAGCGCGGGCGAGAGC
TTCATCGCCTCGTGCACGCTCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGTGGGGCCCAGCGC
CAGCCTCACACCCGCGGTCCCGATGGGAATCTGGGCAATCGGCGACCGGGGCCGCGAGTTGATCG
CCTGGAGCACCTCGGCAGACGCGAGCGACAGCTGCTGGGCCATCAACGGGGTGCCGTCCTGGCCG
TAGACCCAGTCGTAGCCCGAGAACTGCGACCCCACGGGCGACACCACCGAGGGAGCCAACCCGAG
CGACAGGAGCCCGTCCACCAGCTCAAACCGCGTGTGGTTGGACACCGAGATCGGCGCCAGCCGCT
GGGGCTCCAAGTAGCTCAGCGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCAAACGGGCTGGGC
CCGGAGGCCACGGGCTCGAACGGGGTGGGTTCAAACAGCGACTTT
Right flanking sequence: Indices 40635 -- 41134
GACTTTGGCTCAAACAGGGTGTTAGGGTCAAACAGCGAGTTAGGGTCATATCTCTGGCCCACCGG
GTCAAACTGCGCGGAGGCCATCGGCGCCACGGGGTCGTAGCCCGTGCCCAGCGTGTCAAACACCC
CCAGACTGTTGGCGTCGTAGCTGAAACTGGCGTCGTAGCCCGTGTTCTGCCCGTACACCTCGTCG
TAGCTCGCCACCCGCTTGCCCAGACCGTAGCCCTCGGGCGAAAGACCCTTCTGGTACTTTTTCTT
GGGCAACGGGTCGCCAAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTTCTGCGGGCGGTACCCCG
GGTCTCTGCTCGCCCGCGCCAACTCGAGGCTCTGGAAGATGGCCACGTACTTTTTGACCTCCTGG
CGGTACACCCGGCGCCACTTCTCCTCGTCGGCCGCCACCTGGTCCGCCTGGTCGCCCAACTCGGC
CGCGTGGGCAATCCGGACAATGTCGCCGCCGTCGAGCGCCTGGCG
Found at i:40604 original size:15 final size:15
Alignment explanation
Indices: 40572--40623 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
40562 CTCAAACTGG
40572 GGCTCAAACT--TT-
1 GGCTCAAACTGCTTA
*
40584 GGCTCATACTGCTTA
1 GGCTCAAACTGCTTA
* *
40599 GGCTCAAACTGGTTG
1 GGCTCAAACTGCTTA
40614 GGCTCAAACT
1 GGCTCAAACT
40624 TGGGCTCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
12 9 0.27
14 2 0.06
15 22 0.67
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (15 bp):
GGCTCAAACTGCTTA
Left flanking sequence: Indices 40072 -- 40571
ACTGGATCAGGTCGAGCAGGTCCGGGATGGGCTGGGCTAGCGCGGGCGAGAGCTTCATCGCCTCG
TGCACGCTCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGTGGGGCCCAGCGCCAGCCTCACACC
CGCGGTCCCGATGGGAATCTGGGCAATCGGCGACCGGGGCCGCGAGTTGATCGCCTGGAGCACCT
CGGCAGACGCGAGCGACAGCTGCTGGGCCATCAACGGGGTGCCGTCCTGGCCGTAGACCCAGTCG
TAGCCCGAGAACTGCGACCCCACGGGCGACACCACCGAGGGAGCCAACCCGAGCGACAGGAGCCC
GTCCACCAGCTCAAACCGCGTGTGGTTGGACACCGAGATCGGCGCCAGCCGCTGGGGCTCCAAGT
AGCTCAGCGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCAAACGGGCTGGGCCCGGAGGCCACG
GGCTCGAACGGGGTGGGTTCAAACAGCGACTTTGGCTCAAACTGG
Right flanking sequence: Indices 40624 -- 41123
TGGGCTCAAACGACTTTGGCTCAAACAGGGTGTTAGGGTCAAACAGCGAGTTAGGGTCATATCTC
TGGCCCACCGGGTCAAACTGCGCGGAGGCCATCGGCGCCACGGGGTCGTAGCCCGTGCCCAGCGT
GTCAAACACCCCCAGACTGTTGGCGTCGTAGCTGAAACTGGCGTCGTAGCCCGTGTTCTGCCCGT
ACACCTCGTCGTAGCTCGCCACCCGCTTGCCCAGACCGTAGCCCTCGGGCGAAAGACCCTTCTGG
TACTTTTTCTTGGGCAACGGGTCGCCAAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTTCTGCGG
GCGGTACCCCGGGTCTCTGCTCGCCCGCGCCAACTCGAGGCTCTGGAAGATGGCCACGTACTTTT
TGACCTCCTGGCGGTACACCCGGCGCCACTTCTCCTCGTCGGCCGCCACCTGGTCCGCCTGGTCG
CCCAACTCGGCCGCGTGGGCAATCCGGACAATGTCGCCGCCGTCG
Found at i:40624 original size:42 final size:39
Alignment explanation
Indices: 40553--40649 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 39
40543 GTTCAAACAG
* * *
40553 CGACTTTGGCTCAAACTGGGGCTCAAACTTTGGCTCATA
1 CGACTTAGGCTCAAACTGGGGCTCAAACTTGGGCTCAAA
40592 CTG-CTTAGGCTCAAACTGGTTGGGCTCAAACTTGGGCTCAAA
1 C-GACTTAGGCTCAAACT-G--GGGCTCAAACTTGGGCTCAAA
*
40634 CGACTTTGGCTCAAAC
1 CGACTTAGGCTCAAAC
40650 AGGGTGTTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
39 14 0.29
40 2 0.04
41 1 0.02
42 32 0.65
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
CGACTTAGGCTCAAACTGGGGCTCAAACTTGGGCTCAAA
Left flanking sequence: Indices 40053 -- 40552
GCCAAAAGGTCCTGGTCCAACTGGATCAGGTCGAGCAGGTCCGGGATGGGCTGGGCTAGCGCGGG
CGAGAGCTTCATCGCCTCGTGCACGCTCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGTGGGGC
CCAGCGCCAGCCTCACACCCGCGGTCCCGATGGGAATCTGGGCAATCGGCGACCGGGGCCGCGAG
TTGATCGCCTGGAGCACCTCGGCAGACGCGAGCGACAGCTGCTGGGCCATCAACGGGGTGCCGTC
CTGGCCGTAGACCCAGTCGTAGCCCGAGAACTGCGACCCCACGGGCGACACCACCGAGGGAGCCA
ACCCGAGCGACAGGAGCCCGTCCACCAGCTCAAACCGCGTGTGGTTGGACACCGAGATCGGCGCC
AGCCGCTGGGGCTCCAAGTAGCTCAGCGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCAAACGG
GCTGGGCCCGGAGGCCACGGGCTCGAACGGGGTGGGTTCAAACAG
Right flanking sequence: Indices 40650 -- 41149
AGGGTGTTAGGGTCAAACAGCGAGTTAGGGTCATATCTCTGGCCCACCGGGTCAAACTGCGCGGA
GGCCATCGGCGCCACGGGGTCGTAGCCCGTGCCCAGCGTGTCAAACACCCCCAGACTGTTGGCGT
CGTAGCTGAAACTGGCGTCGTAGCCCGTGTTCTGCCCGTACACCTCGTCGTAGCTCGCCACCCGC
TTGCCCAGACCGTAGCCCTCGGGCGAAAGACCCTTCTGGTACTTTTTCTTGGGCAACGGGTCGCC
AAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTTCTGCGGGCGGTACCCCGGGTCTCTGCTCGCCC
GCGCCAACTCGAGGCTCTGGAAGATGGCCACGTACTTTTTGACCTCCTGGCGGTACACCCGGCGC
CACTTCTCCTCGTCGGCCGCCACCTGGTCCGCCTGGTCGCCCAACTCGGCCGCGTGGGCAATCCG
GACAATGTCGCCGCCGTCGAGCGCCTGGCGGATCGCCGTGGTCTG
Found at i:40629 original size:27 final size:24
Alignment explanation
Indices: 40555--40649 Score: 82
Period size: 27 Copynumber: 3.6 Consensus size: 24
40545 TCAAACAGCG
*
40555 ACTTTGGCTCAAACTGGGGCTCAA
1 ACTTTGGCTCAAACTTGGGCTCAA
* *
40579 ACTTTGGCTCATACTGCTTAGGCTCAA
1 ACTTTGGCTCA-A--ACTTGGGCTCAA
40606 ACTGGTTGGGCTCAAACTTGGGCTCAAA
1 ACT--TT-GGCTCAAACTTGGGCTC-AA
40634 CGACTTTGGCTCAAAC
1 --ACTTTGGCTCAAAC
40650 AGGGTGTTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
24 11 0.19
25 1 0.02
27 29 0.51
28 4 0.07
29 3 0.05
30 9 0.16
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (24 bp):
ACTTTGGCTCAAACTTGGGCTCAA
Left flanking sequence: Indices 40055 -- 40554
CAAAAGGTCCTGGTCCAACTGGATCAGGTCGAGCAGGTCCGGGATGGGCTGGGCTAGCGCGGGCG
AGAGCTTCATCGCCTCGTGCACGCTCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGTGGGGCCC
AGCGCCAGCCTCACACCCGCGGTCCCGATGGGAATCTGGGCAATCGGCGACCGGGGCCGCGAGTT
GATCGCCTGGAGCACCTCGGCAGACGCGAGCGACAGCTGCTGGGCCATCAACGGGGTGCCGTCCT
GGCCGTAGACCCAGTCGTAGCCCGAGAACTGCGACCCCACGGGCGACACCACCGAGGGAGCCAAC
CCGAGCGACAGGAGCCCGTCCACCAGCTCAAACCGCGTGTGGTTGGACACCGAGATCGGCGCCAG
CCGCTGGGGCTCCAAGTAGCTCAGCGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCAAACGGGC
TGGGCCCGGAGGCCACGGGCTCGAACGGGGTGGGTTCAAACAGCG
Right flanking sequence: Indices 40650 -- 41149
AGGGTGTTAGGGTCAAACAGCGAGTTAGGGTCATATCTCTGGCCCACCGGGTCAAACTGCGCGGA
GGCCATCGGCGCCACGGGGTCGTAGCCCGTGCCCAGCGTGTCAAACACCCCCAGACTGTTGGCGT
CGTAGCTGAAACTGGCGTCGTAGCCCGTGTTCTGCCCGTACACCTCGTCGTAGCTCGCCACCCGC
TTGCCCAGACCGTAGCCCTCGGGCGAAAGACCCTTCTGGTACTTTTTCTTGGGCAACGGGTCGCC
AAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTTCTGCGGGCGGTACCCCGGGTCTCTGCTCGCCC
GCGCCAACTCGAGGCTCTGGAAGATGGCCACGTACTTTTTGACCTCCTGGCGGTACACCCGGCGC
CACTTCTCCTCGTCGGCCGCCACCTGGTCCGCCTGGTCGCCCAACTCGGCCGCGTGGGCAATCCG
GACAATGTCGCCGCCGTCGAGCGCCTGGCGGATCGCCGTGGTCTG
Found at i:40667 original size:18 final size:18
Alignment explanation
Indices: 40644--40682 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
40634 CGACTTTGGC
* *
40644 TCAAACAGGGTGTTAGGG
1 TCAAACAGCGAGTTAGGG
40662 TCAAACAGCGAGTTAGGG
1 TCAAACAGCGAGTTAGGG
40680 TCA
1 TCA
40683 TATCTCTGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.21
Consensus pattern (18 bp):
TCAAACAGCGAGTTAGGG
Left flanking sequence: Indices 40144 -- 40643
TCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGTGGGGCCCAGCGCCAGCCTCACACCCGCGGTC
CCGATGGGAATCTGGGCAATCGGCGACCGGGGCCGCGAGTTGATCGCCTGGAGCACCTCGGCAGA
CGCGAGCGACAGCTGCTGGGCCATCAACGGGGTGCCGTCCTGGCCGTAGACCCAGTCGTAGCCCG
AGAACTGCGACCCCACGGGCGACACCACCGAGGGAGCCAACCCGAGCGACAGGAGCCCGTCCACC
AGCTCAAACCGCGTGTGGTTGGACACCGAGATCGGCGCCAGCCGCTGGGGCTCCAAGTAGCTCAG
CGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCAAACGGGCTGGGCCCGGAGGCCACGGGCTCGA
ACGGGGTGGGTTCAAACAGCGACTTTGGCTCAAACTGGGGCTCAAACTTTGGCTCATACTGCTTA
GGCTCAAACTGGTTGGGCTCAAACTTGGGCTCAAACGACTTTGGC
Right flanking sequence: Indices 40683 -- 41182
TATCTCTGGCCCACCGGGTCAAACTGCGCGGAGGCCATCGGCGCCACGGGGTCGTAGCCCGTGCC
CAGCGTGTCAAACACCCCCAGACTGTTGGCGTCGTAGCTGAAACTGGCGTCGTAGCCCGTGTTCT
GCCCGTACACCTCGTCGTAGCTCGCCACCCGCTTGCCCAGACCGTAGCCCTCGGGCGAAAGACCC
TTCTGGTACTTTTTCTTGGGCAACGGGTCGCCAAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTT
CTGCGGGCGGTACCCCGGGTCTCTGCTCGCCCGCGCCAACTCGAGGCTCTGGAAGATGGCCACGT
ACTTTTTGACCTCCTGGCGGTACACCCGGCGCCACTTCTCCTCGTCGGCCGCCACCTGGTCCGCC
TGGTCGCCCAACTCGGCCGCGTGGGCAATCCGGACAATGTCGCCGCCGTCGAGCGCCTGGCGGAT
CGCCGTGGTCTGCTCGACCGCCGCCTGGCGGCTGTCCCGCGCCTC
Found at i:42343 original size:13 final size:13
Alignment explanation
Indices: 42325--42356 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
42315 ACTGCGGGCT
42325 GTGGTGGGCTATG
1 GTGGTGGGCTATG
42338 GTGGTGGGCTATG
1 GTGGTGGGCTATG
42351 GTGGTG
1 GTGGTG
42357 AATGGTGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.56, T:0.31
Consensus pattern (13 bp):
GTGGTGGGCTATG
Left flanking sequence: Indices 41825 -- 42324
CTGGATGTACACGGGCATCAGCTTCGTGCGGAAGCCCAGCACCCCGTTGACCGCCACCACCTCGA
CACACACGCGACGGTCCCGGGGCACGTTCCGGAGCCGGCACTGGCTCTTGCCGGCCACCGCGGCC
ACTTCGAGCCCGTCCACAAGCACCACGTAGTACTGGTCGCCGCCAGAGACCTCCCAGTGCATCAC
TACGCCGTCGGAGCCGATGGCATCAATGCAAACTTGGGGCATCGGTGGGAGATCGAGTCCGATGC
CCAGGATATCCGTCGGGAGCACAAGCAAACGGACTAGCCGGTACACTAGCCATGTGAGGGCAAGC
CCCGTGGTCACCACCTCAAACATCGTGGGTGGGTGTGGCGTGCAAGACTCGCTGGAGAGACGACT
GGTTTGTGTCTCGGTTAGAGATCTTTTTTGACGTACCAGTCGCACGATCGATGTGGGGGTTGGAA
GGACGAGTGCGAAGGGAGATTGTAGAGGGTGGTTTACTGCGGGCT
Right flanking sequence: Indices 42357 -- 42856
AATGGTGGTAGTGGGGGTGATGGTGGGGGTGGTCTTTTACCTGGATTTTACCTGGTTTTTCCCTG
GTTTCTACGGGTGGTTTTTGGTTTTCTACGCGTGTGTATAGGGCCGGTGTTTGGTCTGTGGTGGG
CCCACTACTGCGAACGGTAGGGCTTAGCACAGAGCCTCGGTTGTGCGTGGAAGCGGGTGCGGACG
ACGGCGAGGGTCGTGGGTCGCGTGGTGTGGGGTTTTGCGACACTTGCGGCGGCACGCGTTGGTGG
AGGCGTGGGGTGTATGCGTAGGGTATAGGCGTGAGGCTATTGGTAGGGAGAAGACGGTGGGATAG
GGGAGAAATTTGGGGAAACCGGGCGAAAAAACGGGCGGAATAGGGTAATTAGGGGGAGAGAAGAG
AGGCAGGGCATCGAGTTGTGTGTTTTGGCAGAAGGTGCTTGAGTTAGTTTGTAGTAGGGCGTTGG
TTGTGTCTTGGTGCATTTGCGCTATTTTGGTCGCAGGGTGTGACC
Found at i:42423 original size:11 final size:11
Alignment explanation
Indices: 42386--42425 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
42376 ATGGTGGGGG
42386 TGGTCTTTTACC
1 TGGT-TTTTACC
*
42398 TGGATTTTACC
1 TGGTTTTTACC
*
42409 TGGTTTTTCCC
1 TGGTTTTTACC
42420 TGGTTT
1 TGGTTT
42426 CTACGGGTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 22 0.88
12 3 0.12
ACGTcount: A:0.07, C:0.20, G:0.20, T:0.53
Consensus pattern (11 bp):
TGGTTTTTACC
Left flanking sequence: Indices 41886 -- 42385
TCGACACACACGCGACGGTCCCGGGGCACGTTCCGGAGCCGGCACTGGCTCTTGCCGGCCACCGC
GGCCACTTCGAGCCCGTCCACAAGCACCACGTAGTACTGGTCGCCGCCAGAGACCTCCCAGTGCA
TCACTACGCCGTCGGAGCCGATGGCATCAATGCAAACTTGGGGCATCGGTGGGAGATCGAGTCCG
ATGCCCAGGATATCCGTCGGGAGCACAAGCAAACGGACTAGCCGGTACACTAGCCATGTGAGGGC
AAGCCCCGTGGTCACCACCTCAAACATCGTGGGTGGGTGTGGCGTGCAAGACTCGCTGGAGAGAC
GACTGGTTTGTGTCTCGGTTAGAGATCTTTTTTGACGTACCAGTCGCACGATCGATGTGGGGGTT
GGAAGGACGAGTGCGAAGGGAGATTGTAGAGGGTGGTTTACTGCGGGCTGTGGTGGGCTATGGTG
GTGGGCTATGGTGGTGAATGGTGGTAGTGGGGGTGATGGTGGGGG
Right flanking sequence: Indices 42426 -- 42925
CTACGGGTGGTTTTTGGTTTTCTACGCGTGTGTATAGGGCCGGTGTTTGGTCTGTGGTGGGCCCA
CTACTGCGAACGGTAGGGCTTAGCACAGAGCCTCGGTTGTGCGTGGAAGCGGGTGCGGACGACGG
CGAGGGTCGTGGGTCGCGTGGTGTGGGGTTTTGCGACACTTGCGGCGGCACGCGTTGGTGGAGGC
GTGGGGTGTATGCGTAGGGTATAGGCGTGAGGCTATTGGTAGGGAGAAGACGGTGGGATAGGGGA
GAAATTTGGGGAAACCGGGCGAAAAAACGGGCGGAATAGGGTAATTAGGGGGAGAGAAGAGAGGC
AGGGCATCGAGTTGTGTGTTTTGGCAGAAGGTGCTTGAGTTAGTTTGTAGTAGGGCGTTGGTTGT
GTCTTGGTGCATTTGCGCTATTTTGGTCGCAGGGTGTGACCCAAGGCCTCCGTGTGAGCAGAGTT
GACCAGAGTGTGGGTGTGATGCTAGTCCGTGCTAGCCACATCGCG
Found at i:43217 original size:23 final size:22
Alignment explanation
Indices: 43181--43223 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
43171 AGACACACAA
*
43181 AAGCCAATCAGTAGACACATTG
1 AAGCCAATCAGTAGAAACATTG
*
43203 AAGCTCAATCCGTAGAAACAT
1 AAGC-CAATCAGTAGAAACAT
43224 GGTTGTTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (22 bp):
AAGCCAATCAGTAGAAACATTG
Left flanking sequence: Indices 42681 -- 43180
GGGGAGAAATTTGGGGAAACCGGGCGAAAAAACGGGCGGAATAGGGTAATTAGGGGGAGAGAAGA
GAGGCAGGGCATCGAGTTGTGTGTTTTGGCAGAAGGTGCTTGAGTTAGTTTGTAGTAGGGCGTTG
GTTGTGTCTTGGTGCATTTGCGCTATTTTGGTCGCAGGGTGTGACCCAAGGCCTCCGTGTGAGCA
GAGTTGACCAGAGTGTGGGTGTGATGCTAGTCCGTGCTAGCCACATCGCGCTCGCTAGCCACATC
GCGTCTCTTCGCTGGTCTACTTGGTTCCTGACACAATGCCAACCGTTGCCAAGATTTATGCAAAG
TAAGCCCTATTGTCAGCAACGGAGATCGTAGACAGTGGTGGATGGATGCCAAGAACCAGAACAGG
CAATTGTGTGATCTAGGAAAGAGAGCTATTGGATTGTTGTATGTCAAATCTGGGTACATTCATGA
ATTTTCAACCGGACTGATTGAAGCTCATTCAGCTTAGACACACAA
Right flanking sequence: Indices 43224 -- 43723
GGTTGTTGTCAACCATGATCGTTTAGTTGTCTCAGATTATTATTACCCATTTCAGCCACCCAACC
CTTTATCTTCACTTTGTAACCACCCTATCCGCCACAGTCCCTACAACATTAGTCAGCTGTGGTGG
GCCCCACTGTGGCTAACCAGCCCCTACTATAAAACGGGCTATCCTCAGTCTCTCCTGCCCCTAGC
TCTCTACTCACCATGGCCACCTACCGCTCCGGCTACTCCGACATCTTCGAACCCGCGAACCTCCA
CTTGGCTGGTGGAAAGGTCGAAACTCTCGACATTGAAGAACACCGCAAAACGGTCAAGTACCCCC
AATACCTCGTGCCCACCCCGAAAGATGAGGCAGGGAAGTTTCCCCGGATCGAGAATCCGGGCTGG
CAGAACAAGGATCGCGGTCACTTTGGCGACAGCTCCTTCAAGCACTTGTTCCCCAAGGGACAGGA
TGCGTACGCCAAGTTAGACTTGTCTCCCGACCTCGGTACTGAGAT
Found at i:50911 original size:16 final size:16
Alignment explanation
Indices: 50890--50942 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
50880 AATCCCCGCT
50890 TTCTCTGCTTCCCACC
1 TTCTCTGCTTCCCACC
**
50906 TTCTCTGCTTCCTGCC
1 TTCTCTGCTTCCCACC
*
50922 TTCTCCGCTTCCCACC
1 TTCTCTGCTTCCCACC
50938 TTCTC
1 TTCTC
50943 CGCCCCACCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.04, C:0.49, G:0.08, T:0.40
Consensus pattern (16 bp):
TTCTCTGCTTCCCACC
Left flanking sequence: Indices 50390 -- 50889
CGGGTACAGACGGCAAAAAAGAACCCACGGCGGGAGTCGAACCCACAACCTTTCGATTAGAAGTC
GAATGCGCTAACCATTGCGCCACGCAGGCTTGCTATGAACGGGTTGTTTTGTAGCCAGTGATGTC
GGGGAGGGAAAAGAATTCAGAGAATGCGGTAGGTGTAGTGTAGAGTCATTTCTGGCAATTGTGTA
GTAAATGGTTTAAAAATAGTGCTTCCCAACCTGTCTCAGGCCGTGAAATCGGTTATTGCTATTTT
AGTACGGTCCGTTTAGCCGCCGAATGAGGGCGGAAAGAGCTCCACAAACGGTATCATTGGCGTTG
TATCCCTTTTAAATCATCTTCACAACTCGAAGTTACACAATGTTCACCCAAATGTCCTACCTTTA
CACCTAAGTATCGCCGTATATCATCATTTCGTAAATACATTCGCTTAATTTAATCGGACACTCCA
CCAACCGGTTCACCAGACATAGCTCATGCCTTCAAAATCCCCGCT
Right flanking sequence: Indices 50943 -- 51442
CGCCCCACCTCTCACTCAATCCCTACCCTTTACTTATCTCATTTATTGTCACGATGCAAATCAGT
CTACAACTGGGCCACCAGCAGCTTGCGCGACGGCAACGCCAGCAGCGCCGCCAGCAGGGCCGCCA
GTTTCACAGGGCTGCCCGGCTCCTCGGCCTGCTCCTCAAACAAGTGCACGTATTTCTGCACCTTG
CCCACCTTGATGTACTTGAGCCGCTTGTTGTCCTTGATGTACCGTGGCACCAGCGCCAGGTCGTG
CAAGGCCTCGTGGATCTCAAACTCGGCGAGCGCGGCGCTCATCAGCGTCCGCAACGGCCGCCGGG
GCAGTTTGAACAGCAGATTCCGCGTGAGCGGCTGCGACCGCGTCTGGGGCAGTGGCGGCACCGAC
ACCGTGGGCAGCTGGGGCTTGGAGCTGTCGGTGGTGTTGTGGCGGGTGGTGGGACGCAACACCGA
CCGGCTGGGAAGCCGGAACAGCTGGCGGGTCGCCAGAGTCGGCGG
Found at i:50951 original size:14 final size:15
Alignment explanation
Indices: 50899--50952 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
50889 TTTCTCTGCT
*
50899 TCCCACCTTCTCTGC
1 TCCCACCTTCTCCGC
**
50914 TTCCTGCCTTCTCCGC
1 -TCCCACCTTCTCCGC
50930 TTCCCACCTTCTCCGC
1 -TCCCACCTTCTCCGC
50946 -CCCACCT
1 TCCCACCT
50953 CTCACTCAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
14 7 0.21
16 26 0.79
ACGTcount: A:0.06, C:0.56, G:0.07, T:0.31
Consensus pattern (15 bp):
TCCCACCTTCTCCGC
Left flanking sequence: Indices 50399 -- 50898
ACGGCAAAAAAGAACCCACGGCGGGAGTCGAACCCACAACCTTTCGATTAGAAGTCGAATGCGCT
AACCATTGCGCCACGCAGGCTTGCTATGAACGGGTTGTTTTGTAGCCAGTGATGTCGGGGAGGGA
AAAGAATTCAGAGAATGCGGTAGGTGTAGTGTAGAGTCATTTCTGGCAATTGTGTAGTAAATGGT
TTAAAAATAGTGCTTCCCAACCTGTCTCAGGCCGTGAAATCGGTTATTGCTATTTTAGTACGGTC
CGTTTAGCCGCCGAATGAGGGCGGAAAGAGCTCCACAAACGGTATCATTGGCGTTGTATCCCTTT
TAAATCATCTTCACAACTCGAAGTTACACAATGTTCACCCAAATGTCCTACCTTTACACCTAAGT
ATCGCCGTATATCATCATTTCGTAAATACATTCGCTTAATTTAATCGGACACTCCACCAACCGGT
TCACCAGACATAGCTCATGCCTTCAAAATCCCCGCTTTCTCTGCT
Right flanking sequence: Indices 50953 -- 51452
CTCACTCAATCCCTACCCTTTACTTATCTCATTTATTGTCACGATGCAAATCAGTCTACAACTGG
GCCACCAGCAGCTTGCGCGACGGCAACGCCAGCAGCGCCGCCAGCAGGGCCGCCAGTTTCACAGG
GCTGCCCGGCTCCTCGGCCTGCTCCTCAAACAAGTGCACGTATTTCTGCACCTTGCCCACCTTGA
TGTACTTGAGCCGCTTGTTGTCCTTGATGTACCGTGGCACCAGCGCCAGGTCGTGCAAGGCCTCG
TGGATCTCAAACTCGGCGAGCGCGGCGCTCATCAGCGTCCGCAACGGCCGCCGGGGCAGTTTGAA
CAGCAGATTCCGCGTGAGCGGCTGCGACCGCGTCTGGGGCAGTGGCGGCACCGACACCGTGGGCA
GCTGGGGCTTGGAGCTGTCGGTGGTGTTGTGGCGGGTGGTGGGACGCAACACCGACCGGCTGGGA
AGCCGGAACAGCTGGCGGGTCGCCAGAGTCGGCGGTTCCAACGCC
Found at i:51061 original size:12 final size:12
Alignment explanation
Indices: 51044--51073 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51034 GCGACGGCAA
51044 CGCCAGCAGCGC
1 CGCCAGCAGCGC
*
51056 CGCCAGCAGGGC
1 CGCCAGCAGCGC
51068 CGCCAG
1 CGCCAG
51074 TTTCACAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.47, G:0.37, T:0.00
Consensus pattern (12 bp):
CGCCAGCAGCGC
Left flanking sequence: Indices 50544 -- 51043
TGCGGTAGGTGTAGTGTAGAGTCATTTCTGGCAATTGTGTAGTAAATGGTTTAAAAATAGTGCTT
CCCAACCTGTCTCAGGCCGTGAAATCGGTTATTGCTATTTTAGTACGGTCCGTTTAGCCGCCGAA
TGAGGGCGGAAAGAGCTCCACAAACGGTATCATTGGCGTTGTATCCCTTTTAAATCATCTTCACA
ACTCGAAGTTACACAATGTTCACCCAAATGTCCTACCTTTACACCTAAGTATCGCCGTATATCAT
CATTTCGTAAATACATTCGCTTAATTTAATCGGACACTCCACCAACCGGTTCACCAGACATAGCT
CATGCCTTCAAAATCCCCGCTTTCTCTGCTTCCCACCTTCTCTGCTTCCTGCCTTCTCCGCTTCC
CACCTTCTCCGCCCCACCTCTCACTCAATCCCTACCCTTTACTTATCTCATTTATTGTCACGATG
CAAATCAGTCTACAACTGGGCCACCAGCAGCTTGCGCGACGGCAA
Right flanking sequence: Indices 51074 -- 51573
TTTCACAGGGCTGCCCGGCTCCTCGGCCTGCTCCTCAAACAAGTGCACGTATTTCTGCACCTTGC
CCACCTTGATGTACTTGAGCCGCTTGTTGTCCTTGATGTACCGTGGCACCAGCGCCAGGTCGTGC
AAGGCCTCGTGGATCTCAAACTCGGCGAGCGCGGCGCTCATCAGCGTCCGCAACGGCCGCCGGGG
CAGTTTGAACAGCAGATTCCGCGTGAGCGGCTGCGACCGCGTCTGGGGCAGTGGCGGCACCGACA
CCGTGGGCAGCTGGGGCTTGGAGCTGTCGGTGGTGTTGTGGCGGGTGGTGGGACGCAACACCGAC
CGGCTGGGAAGCCGGAACAGCTGGCGGGTCGCCAGAGTCGGCGGTTCCAACGCCAGGGGATCGGC
CTTCGAGTTCAGCCGCGACCGGGCCCACGAAGGGACAAAGTCGTCGTCGTCGTCGGCTCCGGGGG
TCTGTGGAAGCCTCACCGGGCGCAACAGCTTGGTGGGCGTGCCTG
Found at i:52137 original size:21 final size:21
Alignment explanation
Indices: 52113--52190 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 21
52103 TTGCTCGTGG
* *
52113 AGCTCGTGCGCTTGTAACCGT
1 AGCTCGTGCTCTTGTAGCCGT
* *
52134 AG--C-TGCTCTTTTAGCTGT
1 AGCTCGTGCTCTTGTAGCCGT
52152 AGCTCGTGCTCTTGTAGCCGT
1 AGCTCGTGCTCTTGTAGCCGT
*
52173 AGCTCGTGCTCTCGTAGC
1 AGCTCGTGCTCTTGTAGC
52191 GGCAGCCCCG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
18 13 0.28
19 1 0.02
20 1 0.02
21 32 0.68
ACGTcount: A:0.12, C:0.28, G:0.27, T:0.33
Consensus pattern (21 bp):
AGCTCGTGCTCTTGTAGCCGT
Left flanking sequence: Indices 51613 -- 52112
AGCCCGGAGCGACGTCGTCGTAGTTGCACTCGACCTCGTTCAAGTCGTCCAAGAGGAGGTACTCT
GGATGGTGCTTGACGGCAGCGGGAGCCGCGAGCGCGGGCGACAGCGTGTAGCTGTCGTTGTGGCG
CATGTTGGAGGGGTCGGCAATGAACGTCTGTCTCGGCAGCGGGAGAAGCGTCAGCACCAGTGACA
GCAGCGCCATCGGGGCTGGGGCGCGGGCGGGAGCTGGTGCGAGCACGGGCGCGGGGGCGAGGCCC
ACCAGTTTGTCTAACGGTGGGTTCTCGGGTGTCGTGAGAGGTTTGGAGGTGGAAGGAGAGTCTGT
GGTGGGAGGAGGTTTCAGGTGGTGTTTCAGAGTGTCGGAGTGGGGGGCGTCGTGTTTCAGAGTGT
CAGGGTGGGGGTGGTGGGGGGCATGTTTCAGCTCGTGTTTCAGAGGCGGCAAGTGACTTTGGGCC
GGTAGCTCGAAGCCTTGGACGGGTGGCTCGAGCTTTTGCTCGTGG
Right flanking sequence: Indices 52191 -- 52690
GGCAGCCCCGGCTGCTCGTGCTCATGTCTCAGGTCGTGCCTCAGAAGCCCACCCTTGACATTCTC
GCGTTCCTCGTAATCAAACGGATCAAACCCCACAAACACCTTGTCCAACGGGTCGTCGTCCCCCA
ACGTCAGGTCAGACATGTCGCGCGGCTCGTCGTCGTCACTGGGCGCCTCAGACCCGCTCAGGCAC
CCGTCCAACATCCACAACTCGGGGAAGTCGCTCCCGGCCGCCGGCGGCACGGGACTGCTCGCCAA
CGACGGCACTGGCAGCTCGGTGTCCATGTGGTGCAACTGGTTGGCAAACACCACCTCGATGTACG
CCAGAATCAGCGCCACCAACTCGGGATGCCACCCAGCCAAGAGGCTGTAGTGGTTGTCCTCGAGA
TACTGCACCCGCACAGCGTCTCCCACCACGAATTGGAGCACCTTGAGCGTGACCACCACCACAAA
CAGCTCCAGCTCGGGCAAGTCGTCGTGGCGGAACACGGCGTGGGC
Found at i:54187 original size:18 final size:18
Alignment explanation
Indices: 54099--54178 Score: 81
Period size: 18 Copynumber: 4.5 Consensus size: 18
54089 AGACTACTGA
* * *
54099 GTGGACTACCCGGTCTGT
1 GTGGACCACCCAGTCTGC
* *
54117 GTGGACCACCCACTCTGA
1 GTGGACCACCCAGTCTGC
*
54135 GGGGACCA-CCAGTCTGC
1 GTGGACCACCCAGTCTGC
**
54152 GTGGATTACCCAGTCTGC
1 GTGGACCACCCAGTCTGC
54170 GTGGACCAC
1 GTGGACCAC
54179 ACATTCTGCC
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
17 12 0.24
18 37 0.76
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (18 bp):
GTGGACCACCCAGTCTGC
Left flanking sequence: Indices 53599 -- 54098
CATCGGCAACAACGACACGCCGCTCTACGAGCTCGAGTTTGCCAGTTTCAAGCTGGTGGGCGGGG
TGGGCCAGTTCCCCCCCAACGTCCGCGAGTTGTTGCCGTTCATAGCCAACCTGCTGTTGGACCTC
CTCGAGGAGCTCCAGTGGAGCGCGCCCCAGTTCTACTTGGGCAAGGTCGACCTGTTCTCCGGGTA
CCTGGTGGCAGGCTACATCACCCAGGGGAACGTGCGGTTGGTGTTGGTGTACGACAAGAGCGACG
ACGGGCTGATCCGCCAGTTCTTCTACGAGGTGAACGAGTTGTACGTCAAGTGCTTGATGAACCCG
TTCTACGCCGTCAACCAGCCGTTGACGTCGCCGGACTTTGACATGAAGGTGAAGCAGGTGGGGCG
CAAGTACTTGTAACCGCTGGCACGGTGAAGAGAAGTCGCGAAGATATGGTGTGCTGTCGACTGGA
AGGTGCGCACAGTTGGTTAGGGGATTAACACCAGGAGACTACTGA
Right flanking sequence: Indices 54179 -- 54678
ACATTCTGCCTGATCACAGACCTAGTCAAGGACATGGAAATTTATAGTTGAAGGAGAAATCATAG
AATTAACACAACGATACCTTACACAAAGTTAAAATCATTTTGGATGGGGTAAGAAGCCACCCTCA
AAGTAGACTCCCTTGTGCGTGAACCCACCGCGGTTGTTGGGTGTGTTGGCAGCCACAGCACACTG
GTCAAACACCTCGAGATTGATGATCCCGGTGTAGTTGTGGGACCCGCCACCCTGGAACCGTGGCC
GCTTGAAGAATACCTTGCCGTAGCTCTGGCACCCGCGGGTCTCGGGGGTCTTTTTGTCTCCGTTG
TACTTGTAGTACTCGAGCCATTGGGCCGCCCGCCCTGTGAGACCACCCGCGCTGGTGTAGAACAG
GGCAATGTAGACCCGTGTTCCGTCGGGCTCCACCAAGGTGCCGACCCACCGGTGGCGGCCGCCCT
CCGTGGCCACCAACTCCAGTTCGATCCGGTACCAGGTATCGAACC
Found at i:56174 original size:11 final size:11
Alignment explanation
Indices: 56158--56196 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
56148 ATGAATCTGG
56158 CACATCCATGA
1 CACATCCATGA
56169 CACATCCATGA
1 CACATCCATGA
* *
56180 CACATTCTTGA
1 CACATCCATGA
56191 CACATC
1 CACATC
56197 ACCAGCACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.33, C:0.36, G:0.08, T:0.23
Consensus pattern (11 bp):
CACATCCATGA
Left flanking sequence: Indices 55658 -- 56157
TCTCCAGAAGTTACAGAGACAGTACCTGATACTCCCGCTTCACCGACCTACCACATCCACATCAA
CAAGGACAAAGAGATTCATCTCCTCACCCATCTTGTCCACGAAGTCAAGGCCCTCCACGCAACCC
AGCAAAAGATCCACGCTGAGATCACAGACTTGAGACAACAAGTAAACCCTCCCAAGGATCACGAG
GCCCTTCTGCAGCTGGAGAAGACTAGTGACAAAGCCAAACCTTCTGATAAACTCCTGTATTACAT
GAATGCGTTGTTGCTTCTGATGCTTGCCGTGATGCTCCTCATGGTTGCCGGGTTTGAGTATCTCA
AGCGGTCAGAGCCTAAAACCCCGGAAGCGCAGCTTTTACCGATTTAGTGCTGCTATTGGATACGC
CAAGAACAGATATGTTAACGATTATAACCTAAAAATAGATGATGAACAGAATTCTTACAACATTG
CCCGTTAGTCTCGTTGGTAAACGTTTTGTCCCAGAATGAATCTGG
Right flanking sequence: Indices 56197 -- 56696
ACCAGCACATCTCTAGCACATCATTTGCACACAAAGCATTATTACCCCTTGAACATCAGCAAAAC
GTCAGTAGAACACGGTAAAACTTCACTAGAGCAGCAGTACAACATCAGAACAACACCAACACGAT
GAGCACAATATCAGAACATCACACTTTATTATCAAAACTTGGTATACCACCGCAACACAGCACAT
AGCTATAACACCACTTTAACACCAATACAACACCACTAGAACTCCATTAGAACCCCACAACAACA
CCACAATGACACCACTCCTCCACTCTTATCCTTTCTTACTATACTCTTTTCCTTTCTTCCTCTTA
TCCCTTCTTACTATTCTCTTTCCCTTCGTTTCATTCCTTTCTACTATATACATATCACCTACTTC
TCCTCGTCCTTGGCCTCCTCCTCCAACACCTTATCGGTGGCAATCGACCAGTTACCGTCAGCACC
CTGGACCAAGATCCCCTGGTCGCGCAAGGTGACAAACATGTCCTG
Found at i:56504 original size:21 final size:21
Alignment explanation
Indices: 56478--56541 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
56468 CCACTCCTCC
56478 ACTCTTATCCTTTCTTACTAT
1 ACTCTTATCCTTTCTTACTAT
*
56499 ACTCTTTTCCTTTCTT-C---
1 ACTCTTATCCTTTCTTACTAT
*
56516 -CTCTTATCCCTTCTTACTAT
1 ACTCTTATCCTTTCTTACTAT
*
56536 TCTCTT
1 ACTCTT
56542 TCCCTTCGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
16 13 0.37
17 1 0.03
20 1 0.03
21 20 0.57
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (21 bp):
ACTCTTATCCTTTCTTACTAT
Left flanking sequence: Indices 55978 -- 56477
TCTCAAGCGGTCAGAGCCTAAAACCCCGGAAGCGCAGCTTTTACCGATTTAGTGCTGCTATTGGA
TACGCCAAGAACAGATATGTTAACGATTATAACCTAAAAATAGATGATGAACAGAATTCTTACAA
CATTGCCCGTTAGTCTCGTTGGTAAACGTTTTGTCCCAGAATGAATCTGGCACATCCATGACACA
TCCATGACACATTCTTGACACATCACCAGCACATCTCTAGCACATCATTTGCACACAAAGCATTA
TTACCCCTTGAACATCAGCAAAACGTCAGTAGAACACGGTAAAACTTCACTAGAGCAGCAGTACA
ACATCAGAACAACACCAACACGATGAGCACAATATCAGAACATCACACTTTATTATCAAAACTTG
GTATACCACCGCAACACAGCACATAGCTATAACACCACTTTAACACCAATACAACACCACTAGAA
CTCCATTAGAACCCCACAACAACACCACAATGACACCACTCCTCC
Right flanking sequence: Indices 56542 -- 57041
TCCCTTCGTTTCATTCCTTTCTACTATATACATATCACCTACTTCTCCTCGTCCTTGGCCTCCTC
CTCCAACACCTTATCGGTGGCAATCGACCAGTTACCGTCAGCACCCTGGACCAAGATCCCCTGGT
CGCGCAAGGTGACAAACATGTCCTGGGGCACCCACCCGCCGGTAGCAGCAAACGGCTGCGACCCA
AGGTCCAACTGGTACTCCTCCAACCGCGTCAGAATGTCGGTGATCATGTCCTTGGTGTACTTGAT
GGGGAACTGCGGGTCCTCGGTGTTGCAGAGCTGGTTGGCCACGTACAGCTCCCACATGGGCTGTA
AGCTCACAATGGCGTTCTCGGCGTACAAGTAGTCGCGGTCGTTCTTGATGTCAAGCACCGCGGTG
TACGGCGCCTTGAGCGCCTTGATGTGCGGCAGCGCCACCGCAATCAAGTCGTGGCGCCGCTGGTT
CAACCCCACCTCCCACATGCGCTCGTTGCGCGTCTTGAAGTACAT
Found at i:56557 original size:20 final size:20
Alignment explanation
Indices: 56479--56548 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
56469 CACTCCTCCA
* *
56479 CTCTTATCCTTTCTTACTATA
1 CTCTT-TCCCTTCTTACTATT
* *
56500 CTCTTTTCC-T-TT-CT-TC
1 CTCTTTCCCTTCTTACTATT
56516 CTCTTATCCCTTCTTACTATT
1 CTCTT-TCCCTTCTTACTATT
56537 CTCTTTCCCTTC
1 CTCTTTCCCTTC
56549 GTTTCATTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 6 0.15
17 5 0.13
18 3 0.08
19 3 0.08
20 11 0.28
21 11 0.28
ACGTcount: A:0.10, C:0.36, G:0.00, T:0.54
Consensus pattern (20 bp):
CTCTTTCCCTTCTTACTATT
Left flanking sequence: Indices 55979 -- 56478
CTCAAGCGGTCAGAGCCTAAAACCCCGGAAGCGCAGCTTTTACCGATTTAGTGCTGCTATTGGAT
ACGCCAAGAACAGATATGTTAACGATTATAACCTAAAAATAGATGATGAACAGAATTCTTACAAC
ATTGCCCGTTAGTCTCGTTGGTAAACGTTTTGTCCCAGAATGAATCTGGCACATCCATGACACAT
CCATGACACATTCTTGACACATCACCAGCACATCTCTAGCACATCATTTGCACACAAAGCATTAT
TACCCCTTGAACATCAGCAAAACGTCAGTAGAACACGGTAAAACTTCACTAGAGCAGCAGTACAA
CATCAGAACAACACCAACACGATGAGCACAATATCAGAACATCACACTTTATTATCAAAACTTGG
TATACCACCGCAACACAGCACATAGCTATAACACCACTTTAACACCAATACAACACCACTAGAAC
TCCATTAGAACCCCACAACAACACCACAATGACACCACTCCTCCA
Right flanking sequence: Indices 56549 -- 57048
GTTTCATTCCTTTCTACTATATACATATCACCTACTTCTCCTCGTCCTTGGCCTCCTCCTCCAAC
ACCTTATCGGTGGCAATCGACCAGTTACCGTCAGCACCCTGGACCAAGATCCCCTGGTCGCGCAA
GGTGACAAACATGTCCTGGGGCACCCACCCGCCGGTAGCAGCAAACGGCTGCGACCCAAGGTCCA
ACTGGTACTCCTCCAACCGCGTCAGAATGTCGGTGATCATGTCCTTGGTGTACTTGATGGGGAAC
TGCGGGTCCTCGGTGTTGCAGAGCTGGTTGGCCACGTACAGCTCCCACATGGGCTGTAAGCTCAC
AATGGCGTTCTCGGCGTACAAGTAGTCGCGGTCGTTCTTGATGTCAAGCACCGCGGTGTACGGCG
CCTTGAGCGCCTTGATGTGCGGCAGCGCCACCGCAATCAAGTCGTGGCGCCGCTGGTTCAACCCC
ACCTCCCACATGCGCTCGTTGCGCGTCTTGAAGTACATGAACTTG
Found at i:58543 original size:20 final size:20
Alignment explanation
Indices: 58501--58542 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
58491 GAGGTGGGAA
*
58501 GGGTGGAAAGGGGTGGGAGG
1 GGGTAGAAAGGGGTGGGAGG
58521 GGGTAGAAAGAGGG-GGG-GG
1 GGGTAGAAAG-GGGTGGGAGG
58540 GGG
1 GGG
58543 GGGGGGGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 12 0.60
21 3 0.15
ACGTcount: A:0.21, C:0.00, G:0.71, T:0.07
Consensus pattern (20 bp):
GGGTAGAAAGGGGTGGGAGG
Left flanking sequence: Indices 58001 -- 58500
GGATGATCTTGTAGATGCGGTGGTGCTTGCCCTCGTGGATGGACGCAATCAGCTTGAGCGACCCG
CCGTGGGCGCCCACGATCGCCTGGACGTTGCTGTCCAAGTAGCGGATCCCGGCGTCGGCCCGCGG
GGGCAAGAGGCCCTCATGGCCCTTGAGCAGCTTCACCACGTCGGTGATGCCCTCGATCAGGAACT
TGGTGTTGCGCCGCGCCTTCTCAAGCTTGTCGTTGGTCAACCACAGGCCCCAGGTGTACTCGAAG
AACGAGGTGCGCTGGGGGTCGGCCTCGTCGTGGAGGCGGGTGAAAACTTCCTTCGGGGCCTCGGA
AACGAAGCGGCGGGCCACGAGGGAGGCAGCGGGAGCGGCCACACGGGTGCGGGCGACTGCGTGGC
GCACGACACGGGCGGAGCGGGCTAGTCTGAGCATGGTGATGATGATTTTTCAGCAAGCGCGAAAA
GGAGCGAAAGGTGGAGAAGTCGGAGTTTTCGGAGGGAGGTGGGAA
Right flanking sequence: Indices 58543 -- 59042
GGGGGGGGGGGNAGAGATTGTGACGATGGTGATAGGTGGTGGAGATTATGTACGGTGATGTAAGG
AAAAGGGATGAAGATGCGATGAATTGAGGGGGGAAGTGTGGATTGAATGAAATTGATAGTATGGG
GTTTTAGGAACAGATGATGGATTAGAGTTTGCTTGTATTCGTCGTGTTTGACTAGCTATTCACTT
CTCGCAGGAGTGATTTGTGTCAGCTGTCACTGGCCAAGGGTCTATTATTAGCACTGTGACATTGT
GACAAGCCACACCGATGACCATTGGGTTACGCCAAACTGTTCAATGGAACGTTGTCACATTTACT
ACGCAATTGGACCACTTCAACTGTCATCTTCTATAGGTCATCGAAACCAGTTCGAACCTGTTCGA
AACCAGTTCGAGGTAGTTAAATGGCAATGGGTGTCAATACGGACTAGTTTGAAACATAGACCGCC
TTATATGTTGGCCAGAAAGTATACCAACTCCTGCTTTTACCCTTG
Found at i:58936 original size:11 final size:11
Alignment explanation
Indices: 58908--58943 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
58898 CTATAGGTCA
58908 TCGAAACCAGT
1 TCGAAACCAGT
*
58919 TCG-AACCTGT
1 TCGAAACCAGT
58929 TCGAAACCAGT
1 TCGAAACCAGT
58940 TCGA
1 TCGA
58944 GGTAGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (11 bp):
TCGAAACCAGT
Left flanking sequence: Indices 58408 -- 58907
CGGGCTAGTCTGAGCATGGTGATGATGATTTTTCAGCAAGCGCGAAAAGGAGCGAAAGGTGGAGA
AGTCGGAGTTTTCGGAGGGAGGTGGGAAGGGTGGAAAGGGGTGGGAGGGGGTAGAAAGAGGGGGG
GGGGGGGGGGGGGGGGNAGAGATTGTGACGATGGTGATAGGTGGTGGAGATTATGTACGGTGATG
TAAGGAAAAGGGATGAAGATGCGATGAATTGAGGGGGGAAGTGTGGATTGAATGAAATTGATAGT
ATGGGGTTTTAGGAACAGATGATGGATTAGAGTTTGCTTGTATTCGTCGTGTTTGACTAGCTATT
CACTTCTCGCAGGAGTGATTTGTGTCAGCTGTCACTGGCCAAGGGTCTATTATTAGCACTGTGAC
ATTGTGACAAGCCACACCGATGACCATTGGGTTACGCCAAACTGTTCAATGGAACGTTGTCACAT
TTACTACGCAATTGGACCACTTCAACTGTCATCTTCTATAGGTCA
Right flanking sequence: Indices 58944 -- 59443
GGTAGTTAAATGGCAATGGGTGTCAATACGGACTAGTTTGAAACATAGACCGCCTTATATGTTGG
CCAGAAAGTATACCAACTCCTGCTTTTACCCTTGGTTGGCGCACTGTGAAAGCACGGCTGAAGTC
GAGATCAGCTACCCGCTAGACCTATCTCGCTGTGATCAACTGTGCTCAATAAGCCAAAACTCAAC
TTACCAGACCCAATTGACGAACACCACTGTTCTCCCCGTCCCACTAAACACTCCTACACACCACA
AACTAGATTTCACACAGCCACGCCCACGCTACCCCACATTTCGCCACGCGGTGACACTTAAATAC
GACCAAATACGACCCACTATCTCGATCGTACCACCACTCGGTCACGATCGGGCACTATCTGCTAG
GGCCCTGTTCCTGCGCCGAAGCCTGTCATCGACACTGCCACGTAGCAAACCCAATCAACACTTTC
GCATGTCCACAGTCCCATAGCGAACCCACCTCTAGAACTCGCCCT
Found at i:60949 original size:15 final size:15
Alignment explanation
Indices: 60924--60963 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
60914 CACTCTCCCA
60924 CACAT-CCCACACAT
1 CACATCCCCACACAT
60938 CACATCCCCACACAT
1 CACATCCCCACACAT
*
60953 CACATCGCCAC
1 CACATCCCCAC
60964 CAGTTCTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.33, C:0.53, G:0.03, T:0.12
Consensus pattern (15 bp):
CACATCCCCACACAT
Left flanking sequence: Indices 60424 -- 60923
GATAATGCCGTGCATGGAGGATGCGCCAGTCGTCTCGCTTGCAGCTGGCTGCGACGGCGAGTAAC
CGGGGACTGCTGTATGGAAGGAAGCACCCGCCTATCGAAGGCGGGAACACGAGAAAAGAAAAGGG
GCGGTGGTTGTTTTGCGGGACGAGTTGGAGGGCGTGGTAGTGGGCCAGCCATTGTTCGCAGGGCT
AGCACGACTAAAGTTTAAGCACAAAACTCGTATACCACCGCGATGCGTCTGGGCATGATTGGCTC
ATCATATGAAAAGCATGCGACCCCACAAAGTAGAGCATGGGGTGAACGCACGAGTCGTACGGGTT
GAGTAGGGCTGGGCAGAGGACCGCCACACGTGAAAGTTACTAGTCGCTACCGGCACGATACGTAC
GCCCAGTGCGCACTGGGCTACGCTACCGGGACGTTACCGGTATACTCGCCTGATGCTACGGATGA
TCTACCTACGGGGATTATCATCCAATGTACTCTCTCACTCTCCCA
Right flanking sequence: Indices 60964 -- 61463
CAGTTCTCTAATTCATCTATTTCCACCTCATTCCATTCCTCACTTCTCACATTTCTCACGCCCAC
CCAAATCACGCCCACCCAAATCACACTCACCCAAACCACCCAAACCACCCAAACCACCCATCCAA
ACCACACCCAACCAAACACGTCCACACCCCCTCTCCCACTCTCCCACTCTCCCACTCCTCTCACA
ACCACACACCACCCACCCTCACAACCCCTTTCTTTCACCCTTCTTTCCACCCTTTCCACCCTCTC
TTTCCATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCCACCTCGCA
AATACGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACGTCCCCACC
GCATCACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCCCCATTATT
TTTACCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGA
Found at i:61039 original size:15 final size:15
Alignment explanation
Indices: 61019--61063 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
61009 CTCACATTTC
61019 TCACGCCCACCCAAA
1 TCACGCCCACCCAAA
61034 TCACGCCCACCCAAA
1 TCACGCCCACCCAAA
* *
61049 TCACACTCACCCAAA
1 TCACGCCCACCCAAA
61064 CCACCCAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.36, C:0.51, G:0.04, T:0.09
Consensus pattern (15 bp):
TCACGCCCACCCAAA
Left flanking sequence: Indices 60519 -- 61018
CCTATCGAAGGCGGGAACACGAGAAAAGAAAAGGGGCGGTGGTTGTTTTGCGGGACGAGTTGGAG
GGCGTGGTAGTGGGCCAGCCATTGTTCGCAGGGCTAGCACGACTAAAGTTTAAGCACAAAACTCG
TATACCACCGCGATGCGTCTGGGCATGATTGGCTCATCATATGAAAAGCATGCGACCCCACAAAG
TAGAGCATGGGGTGAACGCACGAGTCGTACGGGTTGAGTAGGGCTGGGCAGAGGACCGCCACACG
TGAAAGTTACTAGTCGCTACCGGCACGATACGTACGCCCAGTGCGCACTGGGCTACGCTACCGGG
ACGTTACCGGTATACTCGCCTGATGCTACGGATGATCTACCTACGGGGATTATCATCCAATGTAC
TCTCTCACTCTCCCACACATCCCACACATCACATCCCCACACATCACATCGCCACCAGTTCTCTA
ATTCATCTATTTCCACCTCATTCCATTCCTCACTTCTCACATTTC
Right flanking sequence: Indices 61064 -- 61563
CCACCCAAACCACCCAAACCACCCATCCAAACCACACCCAACCAAACACGTCCACACCCCCTCTC
CCACTCTCCCACTCTCCCACTCCTCTCACAACCACACACCACCCACCCTCACAACCCCTTTCTTT
CACCCTTCTTTCCACCCTTTCCACCCTCTCTTTCCATTTTCATACTCTCGTATGCATCCATCCCG
ACGTCTCGGTTCCCTGCATGCCACCTCGCAAATACGAAAGCCCCGTCCATCACCCCATCGCACCC
ATCACACCCACCACGCCCCACGTCCCCACCGCATCACCCACCCACCAACCCCCGCCTCCTGCTAA
TCCCCCTGACCACCGTCCTTCCCCATTATTTTTACCCTCCACATGCGCTGGGCGCACCAGTGCAG
TACCTACCGATATTATTAAGCGGGTTAAACCCTCCCCGCGCGCACCTGAGCCAGTTTAAAAGGTG
GGTGAGAAAAGACTTTTACCACCCTATCGTGCTGATCGCCACCGA
Found at i:61070 original size:9 final size:9
Alignment explanation
Indices: 61056--61088 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
61046 AAATCACACT
61056 CACCCAAAC
1 CACCCAAAC
61065 CACCCAAAC
1 CACCCAAAC
61074 CACCCAAAC
1 CACCCAAAC
61083 CACCCA
1 CACCCA
61089 TCCAAACCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (9 bp):
CACCCAAAC
Left flanking sequence: Indices 60556 -- 61055
GGTGGTTGTTTTGCGGGACGAGTTGGAGGGCGTGGTAGTGGGCCAGCCATTGTTCGCAGGGCTAG
CACGACTAAAGTTTAAGCACAAAACTCGTATACCACCGCGATGCGTCTGGGCATGATTGGCTCAT
CATATGAAAAGCATGCGACCCCACAAAGTAGAGCATGGGGTGAACGCACGAGTCGTACGGGTTGA
GTAGGGCTGGGCAGAGGACCGCCACACGTGAAAGTTACTAGTCGCTACCGGCACGATACGTACGC
CCAGTGCGCACTGGGCTACGCTACCGGGACGTTACCGGTATACTCGCCTGATGCTACGGATGATC
TACCTACGGGGATTATCATCCAATGTACTCTCTCACTCTCCCACACATCCCACACATCACATCCC
CACACATCACATCGCCACCAGTTCTCTAATTCATCTATTTCCACCTCATTCCATTCCTCACTTCT
CACATTTCTCACGCCCACCCAAATCACGCCCACCCAAATCACACT
Right flanking sequence: Indices 61089 -- 61588
TCCAAACCACACCCAACCAAACACGTCCACACCCCCTCTCCCACTCTCCCACTCTCCCACTCCTC
TCACAACCACACACCACCCACCCTCACAACCCCTTTCTTTCACCCTTCTTTCCACCCTTTCCACC
CTCTCTTTCCATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCCACC
TCGCAAATACGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACGTCC
CCACCGCATCACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCCCCA
TTATTTTTACCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATATTATTAAGCGGGT
TAAACCCTCCCCGCGCGCACCTGAGCCAGTTTAAAAGGTGGGTGAGAAAAGACTTTTACCACCCT
ATCGTGCTGATCGCCACCGACTGCGCCCTGTTCGTGTTGCACGCC
Found at i:61135 original size:8 final size:8
Alignment explanation
Indices: 61124--61150 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
61114 TCCACACCCC
61124 CTCTCCCA
1 CTCTCCCA
61132 CTCTCCCA
1 CTCTCCCA
61140 CTCTCCCA
1 CTCTCCCA
61148 CTC
1 CTC
61151 CTCTCACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.63, G:0.00, T:0.26
Consensus pattern (8 bp):
CTCTCCCA
Left flanking sequence: Indices 60624 -- 61123
GACTAAAGTTTAAGCACAAAACTCGTATACCACCGCGATGCGTCTGGGCATGATTGGCTCATCAT
ATGAAAAGCATGCGACCCCACAAAGTAGAGCATGGGGTGAACGCACGAGTCGTACGGGTTGAGTA
GGGCTGGGCAGAGGACCGCCACACGTGAAAGTTACTAGTCGCTACCGGCACGATACGTACGCCCA
GTGCGCACTGGGCTACGCTACCGGGACGTTACCGGTATACTCGCCTGATGCTACGGATGATCTAC
CTACGGGGATTATCATCCAATGTACTCTCTCACTCTCCCACACATCCCACACATCACATCCCCAC
ACATCACATCGCCACCAGTTCTCTAATTCATCTATTTCCACCTCATTCCATTCCTCACTTCTCAC
ATTTCTCACGCCCACCCAAATCACGCCCACCCAAATCACACTCACCCAAACCACCCAAACCACCC
AAACCACCCATCCAAACCACACCCAACCAAACACGTCCACACCCC
Right flanking sequence: Indices 61151 -- 61650
CTCTCACAACCACACACCACCCACCCTCACAACCCCTTTCTTTCACCCTTCTTTCCACCCTTTCC
ACCCTCTCTTTCCATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCC
ACCTCGCAAATACGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACG
TCCCCACCGCATCACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCC
CCATTATTTTTACCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATATTATTAAGCG
GGTTAAACCCTCCCCGCGCGCACCTGAGCCAGTTTAAAAGGTGGGTGAGAAAAGACTTTTACCAC
CCTATCGTGCTGATCGCCACCGACTGCGCCCTGTTCGTGTTGCACGCCGTGTTATGAATGGCAAA
GCCGCAGCCCAACCCCGCCAGCACAAGGCGCAAGCACACCAACCT
Found at i:61228 original size:22 final size:20
Alignment explanation
Indices: 61190--61229 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
61180 CAACCCCTTT
61190 CTTTCACCCTTCTTTCCACC
1 CTTTCACCCTTCTTTCCACC
61210 CTTTCCACCCTCTCTTTCCA
1 CTTT-CACCCT-TCTTTCCA
61230 TTTTCATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 8 0.44
ACGTcount: A:0.10, C:0.50, G:0.00, T:0.40
Consensus pattern (20 bp):
CTTTCACCCTTCTTTCCACC
Left flanking sequence: Indices 60690 -- 61189
TGAAAAGCATGCGACCCCACAAAGTAGAGCATGGGGTGAACGCACGAGTCGTACGGGTTGAGTAG
GGCTGGGCAGAGGACCGCCACACGTGAAAGTTACTAGTCGCTACCGGCACGATACGTACGCCCAG
TGCGCACTGGGCTACGCTACCGGGACGTTACCGGTATACTCGCCTGATGCTACGGATGATCTACC
TACGGGGATTATCATCCAATGTACTCTCTCACTCTCCCACACATCCCACACATCACATCCCCACA
CATCACATCGCCACCAGTTCTCTAATTCATCTATTTCCACCTCATTCCATTCCTCACTTCTCACA
TTTCTCACGCCCACCCAAATCACGCCCACCCAAATCACACTCACCCAAACCACCCAAACCACCCA
AACCACCCATCCAAACCACACCCAACCAAACACGTCCACACCCCCTCTCCCACTCTCCCACTCTC
CCACTCCTCTCACAACCACACACCACCCACCCTCACAACCCCTTT
Right flanking sequence: Indices 61230 -- 61729
TTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCCACCTCGCAAATACG
AAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACGTCCCCACCGCATCA
CCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCCCCATTATTTTTACC
CTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATATTATTAAGCGGGTTAAACCCTCCC
CGCGCGCACCTGAGCCAGTTTAAAAGGTGGGTGAGAAAAGACTTTTACCACCCTATCGTGCTGAT
CGCCACCGACTGCGCCCTGTTCGTGTTGCACGCCGTGTTATGAATGGCAAAGCCGCAGCCCAACC
CCGCCAGCACAAGGCGCAAGCACACCAACCTGAAGCTCGGGTGTGCCAACTGCAAACGGAAGAAG
ATCCGGTGCGATGAAACGCTTCCCCAGTGTGGCAAGTGTGCTCGA
Found at i:73806 original size:9 final size:9
Alignment explanation
Indices: 73792--73840 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
73782 GTTTAGACTG
73792 TCTGTGGGC
1 TCTGTGGGC
73801 TCTGTGGG-
1 TCTGTGGGC
*
73809 TGT-TGGGC
1 TCTGTGGGC
73817 TCTGTGGG-
1 TCTGTGGGC
*
73825 TGT-TGGGC
1 TCTGTGGGC
73833 TCTGTGGG
1 TCTGTGGG
73841 TGTTGGTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
7 8 0.25
8 8 0.25
9 16 0.50
ACGTcount: A:0.00, C:0.14, G:0.49, T:0.37
Consensus pattern (9 bp):
TCTGTGGGC
Left flanking sequence: Indices 73292 -- 73791
TCAGGTTGTCGCCGCTCAGGCCCACTGCTGGCAGCTGGCCCGTGCGCGACTTGTTGACACAGTAG
TTGTAGACGGCGGTGTAGCAATTCATGTACATGTTGGCGGTGACGCCCTGGTCGCCCTGGGACCC
GAGAATGTGCTCGAGTCCGGGCTGGATGAACGTCCAGGTCGCTGCCAAGTCGCTAGCCACGGGGA
ACGACGACATGATCTGGGTTGGGTGTGAGAGAAATTCGTTTTCTGGTGCGAAGGTGCGGCTTAGT
GGCGAGGCGGCGATGGTGGTGGGGCCGGTGGGGGCGGTCGTGGGGGGCTAGAGGCTGGGTGGAGG
TGGTTGGGGAGAGGTGGATGGCTACGCTGGCTAGTTTTGGCGTTGTTTTGGGCGTGGTGGTGGGT
GTAGTTGGTGGACGTGTTCGATCATTTACGAGAAATATAGTACGACAAAAGTGGTTGGGTATGTG
AGGGAATGTAGGAAAAGAAAGGGGGTTATTTGTTTGTTTAGACTG
Right flanking sequence: Indices 73841 -- 74340
TGTTGGTTTGGTGGTGTCTAACTGAAGTAACCTACCGTAGGCTTTGTCACATAGACAATTTACGA
TGCTATTCAATTGGCTTGGCAGTGGATCATACTTGTCACATGTACTGTAAAACAATTGTTACGGA
AGTAGCTTCTACTGCTGGCCTCCACGCCTACCAACATAAGCACAACAAATCGTCTACGTCTCGAG
CCTAGCCACTACACAAGCACAACCGTCTACGTCTCGAACCTAGCCACGCCAGACTAACCACCTTC
TGCCACGTCCTCACGTCGCCGTGCTACGCCCTGCTTCTCTCCACATCCCCTCTATATAAACCCCC
GTAGTTACCAGCCCCCCAATGATCTCGCCGTTGGCCATTGTCGCAGGCATCCTCGCCGTCGGCGT
TCTCCTGACCCTCAAGCTCCTGGTGCTAGAGATCCGCACCCGCAAGTCGTCCCTCTCCTACGACA
ACCCTCTGGTGTACGCCCAGGACCACGTCACCAGCATCGAGTCGA
Found at i:73817 original size:16 final size:16
Alignment explanation
Indices: 73796--73846 Score: 102
Period size: 16 Copynumber: 3.2 Consensus size: 16
73786 AGACTGTCTG
73796 TGGGCTCTGTGGGTGT
1 TGGGCTCTGTGGGTGT
73812 TGGGCTCTGTGGGTGT
1 TGGGCTCTGTGGGTGT
73828 TGGGCTCTGTGGGTGT
1 TGGGCTCTGTGGGTGT
73844 TGG
1 TGG
73847 TTTGGTGGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.00, C:0.12, G:0.51, T:0.37
Consensus pattern (16 bp):
TGGGCTCTGTGGGTGT
Left flanking sequence: Indices 73296 -- 73795
GTTGTCGCCGCTCAGGCCCACTGCTGGCAGCTGGCCCGTGCGCGACTTGTTGACACAGTAGTTGT
AGACGGCGGTGTAGCAATTCATGTACATGTTGGCGGTGACGCCCTGGTCGCCCTGGGACCCGAGA
ATGTGCTCGAGTCCGGGCTGGATGAACGTCCAGGTCGCTGCCAAGTCGCTAGCCACGGGGAACGA
CGACATGATCTGGGTTGGGTGTGAGAGAAATTCGTTTTCTGGTGCGAAGGTGCGGCTTAGTGGCG
AGGCGGCGATGGTGGTGGGGCCGGTGGGGGCGGTCGTGGGGGGCTAGAGGCTGGGTGGAGGTGGT
TGGGGAGAGGTGGATGGCTACGCTGGCTAGTTTTGGCGTTGTTTTGGGCGTGGTGGTGGGTGTAG
TTGGTGGACGTGTTCGATCATTTACGAGAAATATAGTACGACAAAAGTGGTTGGGTATGTGAGGG
AATGTAGGAAAAGAAAGGGGGTTATTTGTTTGTTTAGACTGTCTG
Right flanking sequence: Indices 73847 -- 74346
TTTGGTGGTGTCTAACTGAAGTAACCTACCGTAGGCTTTGTCACATAGACAATTTACGATGCTAT
TCAATTGGCTTGGCAGTGGATCATACTTGTCACATGTACTGTAAAACAATTGTTACGGAAGTAGC
TTCTACTGCTGGCCTCCACGCCTACCAACATAAGCACAACAAATCGTCTACGTCTCGAGCCTAGC
CACTACACAAGCACAACCGTCTACGTCTCGAACCTAGCCACGCCAGACTAACCACCTTCTGCCAC
GTCCTCACGTCGCCGTGCTACGCCCTGCTTCTCTCCACATCCCCTCTATATAAACCCCCGTAGTT
ACCAGCCCCCCAATGATCTCGCCGTTGGCCATTGTCGCAGGCATCCTCGCCGTCGGCGTTCTCCT
GACCCTCAAGCTCCTGGTGCTAGAGATCCGCACCCGCAAGTCGTCCCTCTCCTACGACAACCCTC
TGGTGTACGCCCAGGACCACGTCACCAGCATCGAGTCGACCGTAC
Found at i:76623 original size:16 final size:16
Alignment explanation
Indices: 76604--76657 Score: 108
Period size: 16 Copynumber: 3.4 Consensus size: 16
76594 CTTGCACTCT
76604 GGGCTGTAGCTCTTTA
1 GGGCTGTAGCTCTTTA
76620 GGGCTGTAGCTCTTTA
1 GGGCTGTAGCTCTTTA
76636 GGGCTGTAGCTCTTTA
1 GGGCTGTAGCTCTTTA
76652 GGGCTG
1 GGGCTG
76658 CTTGGCTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.11, C:0.19, G:0.35, T:0.35
Consensus pattern (16 bp):
GGGCTGTAGCTCTTTA
Left flanking sequence: Indices 76104 -- 76603
CTGTTGGCGGAGCTGCAGTTGCACCGCGAGATTGTGCTGGGCATCTCGTACCCCGTGGGATTTGC
GTGCCACGACGGAGACGCCCCCTACCTGGAAATCACCTACACCCACAAGCTCCAGGGGTGCTTGG
ACCTGATGCAGGCCGCTCACAACCCGCACCACTTTTTGAATATCACCAAGAGAGGGCAGGTGGCG
GTGTTGGGCACCTCCGGCAACGACGAGACGTTCATTGTGGCCAACATCGAGCACCTTTGTTTGGC
GCAAATCGACGCTGTGCTCGCCAAGGCCGGGCTGCGACCGGTGATGGTGGACGTGGGCCAGTTGG
GCAACGCCGAGTACGAGCTGAAGCTTGCCAAGATGCGCCACGTGTTGGCCCTGGGAGCCCATGTG
GTTGGTGTGATGGTGGACTCCGGTGAGGAGTACGACTTGCCCACCGAGTACATTGAGAACACCCC
GCGGTTTGTGGCCGAGCTTGCAGCTCTTTAGGCTGCTTGCACTCT
Right flanking sequence: Indices 76658 -- 77157
CTTGGCTTTAGTATTTATGTAACGATGATAGACGACCATAGAGAAGTAATGGGGTGTGGTGATTG
AAGGGTTAGTGACAGGTGGCCCTTGAACCAGGTGCTTTGTAGGCGAGTGAGCGAATTGAGTTCCT
GGAATTCAGACCACCTGATCGGATAGAACTCAGACATGTGTCATTTGAGAAGGGCAGATAGACGG
TTAGATCATGTGAAAGTGAGGTGGACAGTTTATTTGCTAACTACCAAGTCGTATTCTATCTGCGT
GTATTCACGTGAAAGGGACGATCGATTCATCCTGCGGTGAACGCTTACAACATAAAACCCTTACA
ACGAAAATCATCACTTATAACGAAATGCATCACTTACAACGAAATGCAACTCTTACAACGAAACA
ACCCTTACAACGAATTACAACACTCGAAAATACAACCCTTTAAACGAATTACAACACTAGCCCCC
CTTACATTGGTTCGAAACCTACCCCTCTTCGTAATCCATTACCTT
Found at i:76668 original size:32 final size:33
Alignment explanation
Indices: 76580--76661 Score: 116
Period size: 32 Copynumber: 2.6 Consensus size: 33
76570 CCGAGCTTGC
*
76580 AGCTCTTTA-GGCTGCTTGCACTCT-GGGCTGT
1 AGCTCTTTAGGGCTGCTTGCACTTTAGGGCTGT
* *
76611 AGCTCTTTAGGGCTG-TAGCTCTTTAGGGCTGT
1 AGCTCTTTAGGGCTGCTTGCACTTTAGGGCTGT
76643 AGCTCTTTAGGGCTGCTTG
1 AGCTCTTTAGGGCTGCTTG
76662 GCTTTAGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
31 15 0.34
32 27 0.61
33 2 0.05
ACGTcount: A:0.11, C:0.22, G:0.30, T:0.37
Consensus pattern (33 bp):
AGCTCTTTAGGGCTGCTTGCACTTTAGGGCTGT
Left flanking sequence: Indices 76080 -- 76579
TTCACCCTGTCGACGGTGCTGTCGCTGTTGGCGGAGCTGCAGTTGCACCGCGAGATTGTGCTGGG
CATCTCGTACCCCGTGGGATTTGCGTGCCACGACGGAGACGCCCCCTACCTGGAAATCACCTACA
CCCACAAGCTCCAGGGGTGCTTGGACCTGATGCAGGCCGCTCACAACCCGCACCACTTTTTGAAT
ATCACCAAGAGAGGGCAGGTGGCGGTGTTGGGCACCTCCGGCAACGACGAGACGTTCATTGTGGC
CAACATCGAGCACCTTTGTTTGGCGCAAATCGACGCTGTGCTCGCCAAGGCCGGGCTGCGACCGG
TGATGGTGGACGTGGGCCAGTTGGGCAACGCCGAGTACGAGCTGAAGCTTGCCAAGATGCGCCAC
GTGTTGGCCCTGGGAGCCCATGTGGTTGGTGTGATGGTGGACTCCGGTGAGGAGTACGACTTGCC
CACCGAGTACATTGAGAACACCCCGCGGTTTGTGGCCGAGCTTGC
Right flanking sequence: Indices 76662 -- 77161
GCTTTAGTATTTATGTAACGATGATAGACGACCATAGAGAAGTAATGGGGTGTGGTGATTGAAGG
GTTAGTGACAGGTGGCCCTTGAACCAGGTGCTTTGTAGGCGAGTGAGCGAATTGAGTTCCTGGAA
TTCAGACCACCTGATCGGATAGAACTCAGACATGTGTCATTTGAGAAGGGCAGATAGACGGTTAG
ATCATGTGAAAGTGAGGTGGACAGTTTATTTGCTAACTACCAAGTCGTATTCTATCTGCGTGTAT
TCACGTGAAAGGGACGATCGATTCATCCTGCGGTGAACGCTTACAACATAAAACCCTTACAACGA
AAATCATCACTTATAACGAAATGCATCACTTACAACGAAATGCAACTCTTACAACGAAACAACCC
TTACAACGAATTACAACACTCGAAAATACAACCCTTTAAACGAATTACAACACTAGCCCCCCTTA
CATTGGTTCGAAACCTACCCCTCTTCGTAATCCATTACCTTCATT
Found at i:77004 original size:19 final size:20
Alignment explanation
Indices: 76977--77045 Score: 90
Period size: 19 Copynumber: 3.6 Consensus size: 20
76967 ACATAAAACC
76977 CTTACAACGAAAAT-CATCA
1 CTTACAACGAAAATGCATCA
*
76996 CTTATAACG-AAATGCATCA
1 CTTACAACGAAAATGCATCA
* *
77015 CTTACAACG-AAATGCAACT
1 CTTACAACGAAAATGCATCA
77034 CTTACAACGAAA
1 CTTACAACGAAA
77046 CAACCCTTAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
18 4 0.09
19 38 0.86
20 2 0.05
ACGTcount: A:0.45, C:0.25, G:0.09, T:0.22
Consensus pattern (20 bp):
CTTACAACGAAAATGCATCA
Left flanking sequence: Indices 76477 -- 76976
CCCTGGGAGCCCATGTGGTTGGTGTGATGGTGGACTCCGGTGAGGAGTACGACTTGCCCACCGAG
TACATTGAGAACACCCCGCGGTTTGTGGCCGAGCTTGCAGCTCTTTAGGCTGCTTGCACTCTGGG
CTGTAGCTCTTTAGGGCTGTAGCTCTTTAGGGCTGTAGCTCTTTAGGGCTGCTTGGCTTTAGTAT
TTATGTAACGATGATAGACGACCATAGAGAAGTAATGGGGTGTGGTGATTGAAGGGTTAGTGACA
GGTGGCCCTTGAACCAGGTGCTTTGTAGGCGAGTGAGCGAATTGAGTTCCTGGAATTCAGACCAC
CTGATCGGATAGAACTCAGACATGTGTCATTTGAGAAGGGCAGATAGACGGTTAGATCATGTGAA
AGTGAGGTGGACAGTTTATTTGCTAACTACCAAGTCGTATTCTATCTGCGTGTATTCACGTGAAA
GGGACGATCGATTCATCCTGCGGTGAACGCTTACAACATAAAACC
Right flanking sequence: Indices 77046 -- 77545
CAACCCTTACAACGAATTACAACACTCGAAAATACAACCCTTTAAACGAATTACAACACTAGCCC
CCCTTACATTGGTTCGAAACCTACCCCTCTTCGTAATCCATTACCTTCATTAACTCATCTAGTCT
AAGCGATCGGGCAGTAGTTCTTCCCGTCGGGTGCGGCCTCGGTGATCGGGCCCAGATAGTTGCGG
ATCATGATCGACGCCTCGGTCGTCGTCTTCGCATCGCCTTCTCCCTCCTCGCGCTCGTGATACCA
TTCAAGGTACTCGAGCCGCTGGTGGTACTTGACGTGCCCACCAGAAATGTAAATGTCCCCCAGGT
TGACAAAGGGGAAGTGCCACCGGGGCAAGAATATAATCGTGGGCGTGGTCTTGAGCTTCTCGTCC
TCAAAATCCACCTGCACCGTGAGCAAGTACTTGCAGCCCGGCAAGTCAAACTCGGTGGTCACGGG
AAGACCCGGCGACAGCACGACAAACGGCCGCACCACCGCGCTCAC
Found at i:77043 original size:38 final size:35
Alignment explanation
Indices: 76961--77071 Score: 91
Period size: 38 Copynumber: 3.1 Consensus size: 35
76951 GCGGTGAACG
* *
76961 CTTACAAC-ATAA-AACCCTTACAACGAAAATCATCA
1 CTTACAACGA-AACAACACTTACAACG-AAATCAACA
* * *
76996 CTTATAACGAAATGCATCACTTACAACGAAATGCAACT
1 CTTACAACGAAA--CAACACTTACAACGAAAT-CAACA
* *
77034 CTTACAACGAAACAACCCTTACAACGAATTACAACA
1 CTTACAACGAAACAACACTTACAACGAAAT-CAACA
77070 CT
1 CT
77072 CGAAAATACA
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
35 9 0.15
36 22 0.37
37 4 0.07
38 25 0.42
ACGTcount: A:0.45, C:0.28, G:0.06, T:0.21
Consensus pattern (35 bp):
CTTACAACGAAACAACACTTACAACGAAATCAACA
Left flanking sequence: Indices 76461 -- 76960
ATGCGCCACGTGTTGGCCCTGGGAGCCCATGTGGTTGGTGTGATGGTGGACTCCGGTGAGGAGTA
CGACTTGCCCACCGAGTACATTGAGAACACCCCGCGGTTTGTGGCCGAGCTTGCAGCTCTTTAGG
CTGCTTGCACTCTGGGCTGTAGCTCTTTAGGGCTGTAGCTCTTTAGGGCTGTAGCTCTTTAGGGC
TGCTTGGCTTTAGTATTTATGTAACGATGATAGACGACCATAGAGAAGTAATGGGGTGTGGTGAT
TGAAGGGTTAGTGACAGGTGGCCCTTGAACCAGGTGCTTTGTAGGCGAGTGAGCGAATTGAGTTC
CTGGAATTCAGACCACCTGATCGGATAGAACTCAGACATGTGTCATTTGAGAAGGGCAGATAGAC
GGTTAGATCATGTGAAAGTGAGGTGGACAGTTTATTTGCTAACTACCAAGTCGTATTCTATCTGC
GTGTATTCACGTGAAAGGGACGATCGATTCATCCTGCGGTGAACG
Right flanking sequence: Indices 77072 -- 77571
CGAAAATACAACCCTTTAAACGAATTACAACACTAGCCCCCCTTACATTGGTTCGAAACCTACCC
CTCTTCGTAATCCATTACCTTCATTAACTCATCTAGTCTAAGCGATCGGGCAGTAGTTCTTCCCG
TCGGGTGCGGCCTCGGTGATCGGGCCCAGATAGTTGCGGATCATGATCGACGCCTCGGTCGTCGT
CTTCGCATCGCCTTCTCCCTCCTCGCGCTCGTGATACCATTCAAGGTACTCGAGCCGCTGGTGGT
ACTTGACGTGCCCACCAGAAATGTAAATGTCCCCCAGGTTGACAAAGGGGAAGTGCCACCGGGGC
AAGAATATAATCGTGGGCGTGGTCTTGAGCTTCTCGTCCTCAAAATCCACCTGCACCGTGAGCAA
GTACTTGCAGCCCGGCAAGTCAAACTCGGTGGTCACGGGAAGACCCGGCGACAGCACGACAAACG
GCCGCACCACCGCGCTCACCGCACGCACCCCGTCCACCGACGGGT
Found at i:86345 original size:21 final size:21
Alignment explanation
Indices: 86273--86352 Score: 94
Period size: 21 Copynumber: 3.9 Consensus size: 21
86263 TTCGGAAAGA
86273 AGAGGGGTATGGATTGAAAA-
1 AGAGGGGTATGGATTGAAAAT
* * *
86293 GGA-GGGTATGAACTGAAAAGT
1 AGAGGGGTATGGATTGAAAA-T
86314 AG-GGGAGTATGGATTGAAAAT
1 AGAGGG-GTATGGATTGAAAAT
86335 AGAGGGGTATGGATTGAA
1 AGAGGGGTATGGATTGAA
86353 CGCAGGATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
19 14 0.29
20 2 0.04
21 18 0.37
22 15 0.31
ACGTcount: A:0.38, C:0.01, G:0.40, T:0.21
Consensus pattern (21 bp):
AGAGGGGTATGGATTGAAAAT
Left flanking sequence: Indices 85773 -- 86272
CCGCAGTTCGACTTGGCCAACTTTTTGCAGCCGTACGTGTTGCCCAACCAGTTGGTCAATTTGTT
GTACAAGCCGTACAAGACCGACATGGGCCGCGAGAACCCAGAGTCGCAGGCACAGGTGATCAAGG
TGTTGAAGTTGTACATGTCCAAGTACGAAGGGCTGTGGGACCCTGCTGACCCCAAGAACAACCCG
CTCGACTTGCGGGTGGTGGGCGATGTGTTCGGGTTGTTGCGGTTGTGTGTCATTTCCCAGGGTAT
TGCCATGCGGGTGAAGAAGGGGGTGGCGTCGCTGGCCAACGCCTCTGGGTTTGCCCTGTTGTACC
CGTACTTGTCGCAGCTTGCGATGGAGTCGATCGAGGGCGACAAGGGGACGAAGTTGTAGCATGAA
TAAACATTAGGAAAGTTTGAAGGGTATGTGGGTGTGATTAGTGGACTCAGTAGTCTGAAACTAAG
GTTTGTGAGTTCATCGATGGTGAACCTCACGGATATTCGGAAAGA
Right flanking sequence: Indices 86353 -- 86852
CGCAGGATAAGTGGTTGTTGTCAGCAAGTTTGCTAGATGACAAATATGTACCATGTTTTCCATCC
ATACTGTGAATTATTTCACTTAGCGCATATATACGATGTGGTACATCGACCCATGATATCTCCAT
TACACCCACTTTAAATCACCTATTCGACTAACACGCTCACCATACAATACACCATATACCCACCA
CAAATCACAGTCCCCGTAAACATTATCTCACCCCTTTTCCACTTTCGCACGCCTTACATCTTTTT
CATACGATTTCGCAGCCATCACCATGTCCGAGCCGTTAACCACCCACACCCGCCCTGCCACCGAC
GCGTTGATCACTGTCCGCATCATCAAGTCGTTCCCCTACCGCAATGTCAAGAATCTTGTGGTGCC
CCGAATCAACTTGAAGGAGACCACCCCGGCACAGCTCCTCGAGCAGATCCAGAAACGCATCGACA
CCGAGGGCGGGCTCCGCCCGTACCGCAATGTGGCCTACGACACGT
Found at i:89888 original size:12 final size:12
Alignment explanation
Indices: 89871--89913 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
89861 TGAACCATCG
89871 AGGAAATAAGTA
1 AGGAAATAAGTA
*
89883 AGGAAATTAGTA
1 AGGAAATAAGTA
* *
89895 AGGAAAGAAGCA
1 AGGAAATAAGTA
89907 AGGAAAT
1 AGGAAAT
89914 GGAAGTAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.28, T:0.14
Consensus pattern (12 bp):
AGGAAATAAGTA
Left flanking sequence: Indices 89371 -- 89870
CGGCACCCCTGCCACCACCTCGCAGATGGCCAAGGATGTCACCACTTTCCTCAACTGGGCCGCCG
AGCCCGAGCACGACGAGCGTAAGAAGTGGGGTTTGAAGGCGCTCATTGTGGTGTCGTCCCTCTAC
TTGATCTCGATCTACGTCAAGAAGTTCAAGTGGCAACCCATCAAGAACAGAAAGTTCAGATTTGA
CCCCCCCAACAAGAAGAAGTAAGCGTACTTCGTCCCCCAGTTAGTTGGCTTCATCATCCGGCCAA
TGTAAATACGTCATTTATCATATGTGAACCAATAGATTCATACTATAAAAAATAAAAAGTTTGAG
TGAATGCGGTGTTAGAGTGTGCTTTGGTGTAGTTTTTTATGGTGTTTTGTGGTGTTTTGATTGGT
TTGAGGACGAGTGTAAGGAATTGTGGAGTAGATCAAGATTGTGAAATTTTATCGAAAATTGGTGA
AAAATTGGAAGAACGGCAGTTGGCATTCGAGAGAGTGAACCATCG
Right flanking sequence: Indices 89914 -- 90413
GGAAGTAAACAAAGACATTAGTTCCAATAAGAACTGAACACTCCAAAAGCACCGTTTGGCTTTTA
GACTCAAACCGTTTGTTAGCATACCTTATCCAGCCAATGTATGCAATCACAGATCAGCCACATAA
GCAGGGCATCATTATGTAATCAAGTAGTGTTTTGATTATCCCGGGGCTTCCGAACACCAACCACC
CCGCCTCTACATCAACGGCGCTATACTTCCGTTGGACTCATCAAAATCCCTCACCAGCAGCATTT
ACTACACCTCAGTTTCATAGTTTTCACAAATTTCACCACACACCCCTGCCACCACCGCATGTTAA
TCCCCGCTTACTGTGCATCGTTCAAAAACGCTTTCTTCCTCATCTCATGCTAATGTCTGCGTTAG
GCTAGTGGCAGACAACGGCAGCGTGAACCCCTTGCGCTATTTATAATGTACTCGGAACTATGTCT
CGGATATACCTTCATCCCCCCGAAGGTCCGGAGATTAGCCTACCG
Found at i:94726 original size:8 final size:8
Alignment explanation
Indices: 94713--94738 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
94703 ACGTTATAAA
94713 CAACATCT
1 CAACATCT
94721 CAACATCT
1 CAACATCT
94729 CAACATCT
1 CAACATCT
94737 CA
1 CA
94739 TTTCGTCGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (8 bp):
CAACATCT
Left flanking sequence: Indices 94213 -- 94712
GACAGCGCTCCTCCTGCGGACGACATCTACCTTGCTCGCGACCTGCCGCTGGACTTTTTTGCCCT
GTTGCTGGGTCCCCAGCTGGTGAAGTTTGGCGGGTTCCCTCGCAAGCCCGACGACATTGTGCCTG
TGATGCCCGCCAACCAGCTTGCGCGGGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGC
CAGTTGAACGAGAAGATCTACTACGACTTGCGCAACAACTTTGTCGACATCAACGACTACTGTGC
CTTTTACACCAGTTTGGAGCACATTCTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCA
TTATTTATTAGCCTGGCTGCTACTATTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTA
TACAAACTATGCTTGATATCAAGAGTCGCTAATTTCTATTCCATCCGAATGGGATTGTGTCAATA
TATCTCAACATATCTCAACAATATCAACAACATCAACGTTATAAA
Right flanking sequence: Indices 94739 -- 95238
TTTCGTCGCTATCTCATTTCGTCGCTATCTCATTTCGTCGCTATCTCATTTCGTCGCTATCTCAT
TGTCACTACTCTCGCCTATCCTTCCACATATATTCATGCTACCTAGTTGCCAATGTTGAGAATGC
CCTTGCGGTCGTAGACACCAGGACACCGGAGGTACGGGTCCAACGCAATGTAGTTGTTCAGGAGC
AACGTGCCCAACCCGATCTTCTCCTCCAAGTACTTCAGCAGCACCTCGGGGTTGGTACACTCCAC
CCACCGGCGGGTGGCGTCGAGGAACCGCATGTACAACACGTCCCGCTCGCGCATGAGCCGGGCGT
AGGTGGCGTCTCTGTCCTTGGGCGGGAGGTCGTCGCCCTGCTGGGGCTTCGGGTAGTCGGGACCC
AGCCCGTCGGTGCCCCCAAACAGCACGGGGATGTCCTCCTTGGGGATGAACCGGTTGATCTCCTT
GAAGTTCTTGCAGAAGTGGATCTTGGCCGCCACCCCGGGGTCGAT
Found at i:94752 original size:16 final size:16
Alignment explanation
Indices: 94733--94804 Score: 144
Period size: 16 Copynumber: 4.5 Consensus size: 16
94723 ACATCTCAAC
94733 ATCTCATTTCGTCGCT
1 ATCTCATTTCGTCGCT
94749 ATCTCATTTCGTCGCT
1 ATCTCATTTCGTCGCT
94765 ATCTCATTTCGTCGCT
1 ATCTCATTTCGTCGCT
94781 ATCTCATTTCGTCGCT
1 ATCTCATTTCGTCGCT
94797 ATCTCATT
1 ATCTCATT
94805 GTCACTACTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 56 1.00
ACGTcount: A:0.14, C:0.31, G:0.11, T:0.44
Consensus pattern (16 bp):
ATCTCATTTCGTCGCT
Left flanking sequence: Indices 94233 -- 94732
CGACATCTACCTTGCTCGCGACCTGCCGCTGGACTTTTTTGCCCTGTTGCTGGGTCCCCAGCTGG
TGAAGTTTGGCGGGTTCCCTCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCAGCTT
GCGCGGGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCTA
CTACGACTTGCGCAACAACTTTGTCGACATCAACGACTACTGTGCCTTTTACACCAGTTTGGAGC
ACATTCTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTGC
TACTATTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATATC
AAGAGTCGCTAATTTCTATTCCATCCGAATGGGATTGTGTCAATATATCTCAACATATCTCAACA
ATATCAACAACATCAACGTTATAAACAACATCTCAACATCTCAAC
Right flanking sequence: Indices 94805 -- 95304
GTCACTACTCTCGCCTATCCTTCCACATATATTCATGCTACCTAGTTGCCAATGTTGAGAATGCC
CTTGCGGTCGTAGACACCAGGACACCGGAGGTACGGGTCCAACGCAATGTAGTTGTTCAGGAGCA
ACGTGCCCAACCCGATCTTCTCCTCCAAGTACTTCAGCAGCACCTCGGGGTTGGTACACTCCACC
CACCGGCGGGTGGCGTCGAGGAACCGCATGTACAACACGTCCCGCTCGCGCATGAGCCGGGCGTA
GGTGGCGTCTCTGTCCTTGGGCGGGAGGTCGTCGCCCTGCTGGGGCTTCGGGTAGTCGGGACCCA
GCCCGTCGGTGCCCCCAAACAGCACGGGGATGTCCTCCTTGGGGATGAACCGGTTGATCTCCTTG
AAGTTCTTGCAGAAGTGGATCTTGGCCGCCACCCCGGGGTCGATCCAGTGCTTGATGATGTTCCA
CACGGTGGAGAAGATCCACGGAGCATTGTAGATGATCAAGATACC
Found at i:97822 original size:16 final size:16
Alignment explanation
Indices: 97801--97845 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
97791 TCGTCGTCGC
*
97801 TACCACCAAACCATTG
1 TACCACCAAACCATTA
97817 TACCACCAAACCATTA
1 TACCACCAAACCATTA
*
97833 TACTACCAAACCA
1 TACCACCAAACCA
97846 CCAAACCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.42, C:0.38, G:0.02, T:0.18
Consensus pattern (16 bp):
TACCACCAAACCATTA
Left flanking sequence: Indices 97301 -- 97800
TTTTGGCTGCTGCCCAGAGCGACCATCGCGGTTATCTATGCACGTGCGCATGCTTGGAATTCGGG
TTCCAAATAATATTCGACGAACACGGTTGCAGATACGATCGGGCCATCGCTTAGGGCTAACGGTG
GCCAGATCGTCCGGGCGAAGATCGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTT
GGTTTTGTGACCTCGGCAAGCTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGG
GGGATAGGGGTGGAAAAGACACGCAGTGAGTGTGATAATTCCGTGCGTTCCCCAGAGTTTAGCTA
GATAGGGTACTTGACGTGCTGGTAGGGGAAGAATTTGCTATGTGCTATTTACTGTGTTTAATCGG
TTTAGGTGAATGACTATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTG
CCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTCGC
Right flanking sequence: Indices 97846 -- 98345
CCAAACCACCAGACCACAAACTACTATACCAAGAAATCACTATTACACCAGACCACCAGACCACC
AAACTAATGTATCACCAAAGCAACAACCACACCAACAACCACACCACTACACCACTCTACCACTC
TACCACTCTAGTATTACACCACTACCACTCTACCACTATACCACTATACCACTATACCACTATAC
CACCAACTCACCTTACCAAATTACCAAACCATCAAGCCATCAAAGCACCAAAATACTATACTACT
TACCACTATACTACCTATTACTATATTACTTAACAACTACACCACCAATCCACTATACCACCACC
AAATCATTACACCACCTAACTACCACTAGACCACTATTCCCCCAAACCACCACACCACCACACCA
CCACTCTCATACAGTTCATAAATCACTATTTATCAATATCTAGTCGTATAAAAACTAATTGGCCA
CCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGGATAT
Found at i:97946 original size:12 final size:12
Alignment explanation
Indices: 97931--97956 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97921 ATCACCAAAG
97931 CAACAACCACAC
1 CAACAACCACAC
97943 CAACAACCACAC
1 CAACAACCACAC
97955 CA
1 CA
97957 CTACACCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (12 bp):
CAACAACCACAC
Left flanking sequence: Indices 97431 -- 97930
GCCAGATCGTCCGGGCGAAGATCGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTT
GGTTTTGTGACCTCGGCAAGCTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGG
GGGATAGGGGTGGAAAAGACACGCAGTGAGTGTGATAATTCCGTGCGTTCCCCAGAGTTTAGCTA
GATAGGGTACTTGACGTGCTGGTAGGGGAAGAATTTGCTATGTGCTATTTACTGTGTTTAATCGG
TTTAGGTGAATGACTATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTG
CCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTCGCTACCACCAAACCATTGTACC
ACCAAACCATTATACTACCAAACCACCAAACCACCAGACCACAAACTACTATACCAAGAAATCAC
TATTACACCAGACCACCAGACCACCAAACTAATGTATCACCAAAG
Right flanking sequence: Indices 97957 -- 98456
CTACACCACTCTACCACTCTACCACTCTAGTATTACACCACTACCACTCTACCACTATACCACTA
TACCACTATACCACTATACCACCAACTCACCTTACCAAATTACCAAACCATCAAGCCATCAAAGC
ACCAAAATACTATACTACTTACCACTATACTACCTATTACTATATTACTTAACAACTACACCACC
AATCCACTATACCACCACCAAATCATTACACCACCTAACTACCACTAGACCACTATTCCCCCAAA
CCACCACACCACCACACCACCACTCTCATACAGTTCATAAATCACTATTTATCAATATCTAGTCG
TATAAAAACTAATTGGCCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGGATATA
CGGGTCCAAGGCAATGTAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTCGCGCAAGTACC
CCTCGCTCTCCTCGGGGTCGATGGCCTCCACCCACTTGATCAGCG
Found at i:97974 original size:16 final size:16
Alignment explanation
Indices: 97953--98043 Score: 73
Period size: 16 Copynumber: 5.8 Consensus size: 16
97943 CAACAACCAC
97953 ACCACTACACCACTCT
1 ACCACTACACCACTCT
97969 ACCACT-CTACCACTCT
1 ACCACTAC-ACCACTCT
** *
97985 AGTATTACACCA--CT
1 ACCACTACACCACTCT
*
97999 ACCACT-CTACCACTAT
1 ACCACTAC-ACCACTCT
* *
98015 ACCACTATACCACTAT
1 ACCACTACACCACTCT
*
98031 ACCACTATACCAC
1 ACCACTACACCAC
98044 CAACTCACCT
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
13 1 0.02
14 9 0.15
15 1 0.02
16 49 0.80
17 1 0.02
ACGTcount: A:0.33, C:0.43, G:0.01, T:0.23
Consensus pattern (16 bp):
ACCACTACACCACTCT
Left flanking sequence: Indices 97453 -- 97952
CGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTTGGTTTTGTGACCTCGGCAAGCT
GCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGGGGGATAGGGGTGGAAAAGACAC
GCAGTGAGTGTGATAATTCCGTGCGTTCCCCAGAGTTTAGCTAGATAGGGTACTTGACGTGCTGG
TAGGGGAAGAATTTGCTATGTGCTATTTACTGTGTTTAATCGGTTTAGGTGAATGACTATTGCTA
GTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTGCCACTCAAACCCCGATTAAGCC
AGTCTTTCCTCTTTCGTCGTCGCTACCACCAAACCATTGTACCACCAAACCATTATACTACCAAA
CCACCAAACCACCAGACCACAAACTACTATACCAAGAAATCACTATTACACCAGACCACCAGACC
ACCAAACTAATGTATCACCAAAGCAACAACCACACCAACAACCAC
Right flanking sequence: Indices 98044 -- 98543
CAACTCACCTTACCAAATTACCAAACCATCAAGCCATCAAAGCACCAAAATACTATACTACTTAC
CACTATACTACCTATTACTATATTACTTAACAACTACACCACCAATCCACTATACCACCACCAAA
TCATTACACCACCTAACTACCACTAGACCACTATTCCCCCAAACCACCACACCACCACACCACCA
CTCTCATACAGTTCATAAATCACTATTTATCAATATCTAGTCGTATAAAAACTAATTGGCCACCG
TCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGGATATACGGGTCCAAGGCAATGTAGTTG
TTCAGGAGCGCAATATTAAGGGCAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGGGGTCGAT
GGCCTCCACCCACTTGATCAGCGCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCGATGCGGA
GCCGGCGGTACTCGCGGTCCTTGGTCTTGGGCGGCCACTGGTCGC
Found at i:98035 original size:38 final size:38
Alignment explanation
Indices: 97951--98037 Score: 102
Period size: 38 Copynumber: 2.2 Consensus size: 38
97941 ACCAACAACC
* * ** *
97951 ACACCACTACACCACTCTACCACTCTACCACTCTAGTATT
1 ACACCACT--ACCACTCTACCACTATACCACTATACCACT
97991 ACACCACTACCACTCTACCACTATACCACTATACCACT
1 ACACCACTACCACTCTACCACTATACCACTATACCACT
*
98029 ATACCACTA
1 ACACCACTA
98038 TACCACCAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 33 0.80
40 8 0.20
ACGTcount: A:0.33, C:0.43, G:0.01, T:0.23
Consensus pattern (38 bp):
ACACCACTACCACTCTACCACTATACCACTATACCACT
Left flanking sequence: Indices 97451 -- 97950
ATCGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTTGGTTTTGTGACCTCGGCAAG
CTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGGGGGATAGGGGTGGAAAAGAC
ACGCAGTGAGTGTGATAATTCCGTGCGTTCCCCAGAGTTTAGCTAGATAGGGTACTTGACGTGCT
GGTAGGGGAAGAATTTGCTATGTGCTATTTACTGTGTTTAATCGGTTTAGGTGAATGACTATTGC
TAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTGCCACTCAAACCCCGATTAAG
CCAGTCTTTCCTCTTTCGTCGTCGCTACCACCAAACCATTGTACCACCAAACCATTATACTACCA
AACCACCAAACCACCAGACCACAAACTACTATACCAAGAAATCACTATTACACCAGACCACCAGA
CCACCAAACTAATGTATCACCAAAGCAACAACCACACCAACAACC
Right flanking sequence: Indices 98038 -- 98537
TACCACCAACTCACCTTACCAAATTACCAAACCATCAAGCCATCAAAGCACCAAAATACTATACT
ACTTACCACTATACTACCTATTACTATATTACTTAACAACTACACCACCAATCCACTATACCACC
ACCAAATCATTACACCACCTAACTACCACTAGACCACTATTCCCCCAAACCACCACACCACCACA
CCACCACTCTCATACAGTTCATAAATCACTATTTATCAATATCTAGTCGTATAAAAACTAATTGG
CCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGGATATACGGGTCCAAGGCAATG
TAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGGG
GTCGATGGCCTCCACCCACTTGATCAGCGCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCGA
TGCGGAGCCGGCGGTACTCGCGGTCCTTGGTCTTGGGCGGCCACT
Found at i:98057 original size:24 final size:24
Alignment explanation
Indices: 97992--98058 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
97982 TCTAGTATTA
97992 CACCACTACCACTC-TACCACTATAC
1 CACCA-TACCAC-CATACCACTATAC
* *
98017 CACTATACCACTATACCACTATAC
1 CACCATACCACCATACCACTATAC
*
98041 CACCA-ACTCACCTTACCA
1 CACCATAC-CACCATACCA
98059 AATTACCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 2 0.06
24 29 0.83
25 4 0.11
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (24 bp):
CACCATACCACCATACCACTATAC
Left flanking sequence: Indices 97492 -- 97991
GTTTGGTTTTGTGACCTCGGCAAGCTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGA
GCGGGGGATAGGGGTGGAAAAGACACGCAGTGAGTGTGATAATTCCGTGCGTTCCCCAGAGTTTA
GCTAGATAGGGTACTTGACGTGCTGGTAGGGGAAGAATTTGCTATGTGCTATTTACTGTGTTTAA
TCGGTTTAGGTGAATGACTATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCAT
TGTGCCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTCGCTACCACCAAACCATTG
TACCACCAAACCATTATACTACCAAACCACCAAACCACCAGACCACAAACTACTATACCAAGAAA
TCACTATTACACCAGACCACCAGACCACCAAACTAATGTATCACCAAAGCAACAACCACACCAAC
AACCACACCACTACACCACTCTACCACTCTACCACTCTAGTATTA
Right flanking sequence: Indices 98059 -- 98558
AATTACCAAACCATCAAGCCATCAAAGCACCAAAATACTATACTACTTACCACTATACTACCTAT
TACTATATTACTTAACAACTACACCACCAATCCACTATACCACCACCAAATCATTACACCACCTA
ACTACCACTAGACCACTATTCCCCCAAACCACCACACCACCACACCACCACTCTCATACAGTTCA
TAAATCACTATTTATCAATATCTAGTCGTATAAAAACTAATTGGCCACCGTCAAGGTACCATTAC
GGTCATAAAGGCCCGGGTTCCGGATATACGGGTCCAAGGCAATGTAGTTGTTCAGGAGCGCAATA
TTAAGGGCAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGGGGTCGATGGCCTCCACCCACTT
GATCAGCGCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCGATGCGGAGCCGGCGGTACTCGC
GGTCCTTGGTCTTGGGCGGCCACTGGTCGCCAGCACGCGGCACCG
Found at i:105277 original size:20 final size:20
Alignment explanation
Indices: 105254--105311 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
105244 TGATCTCTAG
105254 GCTTATCAAGAGATCTACAA
1 GCTTATCAAGAGATCTACAA
* *
105274 GCTTATCAAGCGATCTACAC
1 GCTTATCAAGAGATCTACAA
* *
105294 CCTTATCAAGTGATCTAC
1 GCTTATCAAGAGATCTAC
105312 GCTTTCCTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (20 bp):
GCTTATCAAGAGATCTACAA
Left flanking sequence: Indices 104754 -- 105253
GATGCACTTGGGCACCTACAAGAAGTTGGCTGCGGAGGGGGTGCACCAGTACTTGGTTCAGCCCG
GTATTTTCACGCTGTTTTCGTTCTTCCAGTTCCTCAACGTGTTCACCTACTACGGGATGATGATG
TTGTTTTACATTGCGCGGTGGTTGGGATCGCCCATCCACAACATTAGCGGCTACATTGCAGCCAA
CGCCCCCGTCAAGTGTGCTACGGCCGAGGGGATGCCCCAGGACGAGAAGGTGGGTTCTGCCAGCA
ACCGGCGCGGCCAGGAGTACGTGATGTACCTGGACGTGGATCCTACGGGGGCGGAGGACGTGGTG
GGGTACTTGGACACCCTCACCAAGGAGTGGGACGACGCCTTGCGCGACCAGATCGCTCCTACGAG
AATACATTAGGTTAATATATGGTTAAGAGTAATTTGGGGTGTGAGAATTCCGTGCTGGTGTCTGG
GGTATCCAGGTAGCCCTTGTAGCCTGTATAGCCAGTGATCTCTAG
Right flanking sequence: Indices 105312 -- 105811
GCTTTCCTCGTATCTTGTTCATCACCAGAACCAGTCACGTGGGCCACATCAGCCACAACCAGCAC
TCCCACGTGTTGACTCGGCCATACACTCTTCCACCCCTCTCCATCCCCTCTTTACCCGTTATCCA
ACCACTCTCCACCTCTCCCCACTCAATCCCCACCACACTTGCGCACCATCGCGCACAACGTGTCT
CGCTGCCCACAATAACACTATTGTGACCCTAACGTCATCCTATTGAATTATTTGATAACCACATT
AAACACACTCCTAAACTTAACCCCACCGCTCCACCCAACCATCACACCCGCTCCCAATGCCCGAC
GTGTCTCCACATCGTCAAAAGCAACCCCCGTTTCACGTGGTACGTGGCAGTCCCCGTAGCCATCA
ATGGCTGCAAAAGGCGCGCGCCAAAATTGAAAAACTATTGACGTGTCGCTCATGAAGATCTGGAT
AGCCCTATTCCTCCACGCGCTCGTGGTGCTAGCAAAGGACTACTA
Found at i:109025 original size:14 final size:14
Alignment explanation
Indices: 109006--109036 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
108996 AAGGAGTAGA
109006 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
109020 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
109034 AGA
1 AGA
109037 AGGAGCAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (14 bp):
AGAGTAGAGATGGT
Left flanking sequence: Indices 108506 -- 109005
TTTGTTGGAGCTCCACGGCGAGGGCCACTTGTTCGCTGGCCAGGACATTGCCCAGCTCCAGAAGC
CGTTCGTCATGGACGCTTCGTACCCGCTGCGGATCGAGGAGGACCCCTACGAGCACTTGGCGGAG
ACCGAGAAGCTCCTCCTGGGGTTGGGGCTCTCCACCTCGTTGCCCGAGCGCCAGGCCATCAGACG
GTTGTCCCAGCTCATTGGGATCCGGTCTGCCCGGTTGTCGGTGTGTGGGATCGCTGCTGCGTGCA
CCAAGCGTGGCTACAAGTCGGGTCACTGTGCGGCCGACGGGTCGCTCTACAACAAGTACCCGCGG
TTTGCTGAGCGGGCAGCCCGGGGGTTGCGAGACATTTTTGAGTGGGCCGACGACATTGAGGACCC
CATCACCATCGTCCACGCCCAGGACGGGCTGGGGGTGGGTGCTGCGGTGATTGCCGCGTTGACCC
AGCAACGGTTGGACAGGGGCCAGTCGGTGGGCGAAAAGGAGTAGA
Right flanking sequence: Indices 109037 -- 109536
AGGAGCAGAAGCTAGACAGTTTAATATGACATAGACAATACTAACGGGGTGGGGATCGATGGAAG
AGTCAATTGATTGATTGAACACAAGCAGACTAAAATAGACAGTTAAGTGTTTTCCGTACAACGTC
GTCATACAAAGTCGTTTCAGTTCCCAGGATCAACTCATATCCCAGAAGCTACACTCGGAGTGACG
TAGAATTGAGTCAAGTTTCCACAAGAAGACTCAGAGCCAGAGCTGCGTCATATCCACACACTCAC
ACACGGTAGACTCATAGAATCATTCCCTTTTTCGATCTCCACTGACGAGCCTACACAAAGCAAGC
CTCCGCAGCACGACCTACCATCCAACATGAGACGCGTATATTATAAATAGTACAGGTTCGGAAGC
CAGTTCCAAACGAAGGCTAGTCAGAAATACAGGCCAGGGGTCCCACAGGACAACGTTCAGGTTCT
CAGCTACGCTGGGCCTACACGGACGAAAAGTGGTCGCGCGGGTGG
Found at i:116414 original size:11 final size:11
Alignment explanation
Indices: 116400--116449 Score: 91
Period size: 11 Copynumber: 4.5 Consensus size: 11
116390 CTCCATTATT
116400 TCTCCACTAGC
1 TCTCCACTAGC
116411 TCTCCACTAGC
1 TCTCCACTAGC
116422 TCTCCACTAGC
1 TCTCCACTAGC
116433 TCTCCACTAGC
1 TCTCCACTAGC
116444 TTCTCC
1 -TCTCC
116450 TCTGGCTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 33 0.87
12 5 0.13
ACGTcount: A:0.16, C:0.46, G:0.08, T:0.30
Consensus pattern (11 bp):
TCTCCACTAGC
Left flanking sequence: Indices 115900 -- 116399
GGCATCATCAACTACCAGCAGGTGTTGACGGTGATCAAGGCGGTGTACAAGATGGTGGGCCCGAT
GGTGGAGTTGCCCAAGGACGAGGCCACCCCCGAGGCCCGCGCGGAGAAGTTCTTTGTGCTCTTGA
AGAAGAACCCGGAGTCGGACTCCATCAACTTGGACGAGTTCCGCAAGTTGGCCAAGGTCGACCCC
ACCGTGCTCAAGGCGTTGAGCGCGTACGAAGGCTGGATTTAATGCATTTATGATAGCAACGATAC
ACCCGCTAGTCGGTAATAGTACATTAACATACACATATGATGAATGGCTGGCCACGGGCCAGGTC
CACGGTAGGATACTCAAACGTACCAAGATGAGCGCCAGTCCACTGGCGTATCTTGTCATGCGATC
TCTGTGATCGTTCTTCGATCACCACTATTCTCTGCTCTTTTTCATTAGCATTCCACTGATTTTCC
ACCAGCTCACTGGGTTTCCACCAGCTCACTAGATTCTCCATTATT
Right flanking sequence: Indices 116450 -- 116949
TCTGGCTTCAAGTCCCTGGGTAGCTTTATTGTTGTCCCTCCACTGCCTCAAGCAACCCGTCCAAG
AGGTCGTCCACCTCCGAGATCGCCACCCCGGTACATATGCTCACCACCTTCTTGAACTTCAGCGT
CAACTCCAGGTAGTCCATCAACAGCTGGAGCTCGGCGTCCATGCGCGCATTCACCTGTTTGTACG
CGGCAATGCGGGCCTTGAGGATCGGGGTGGGCTGCAACGACAACAGCCCGGGCGAAATGTCGTCC
ACCGGCTCGCCCTTGACGAGCCGCAGGTGCAACTCGGGAATGATGTACGGGTCGTCCACCGACCC
CTCGAGCTCGGGCAAGTCCTTGGCGTCCAGGTCCAAGAGCTGGAGCTTGTCGGTGAGGTTGGCCA
TCTGCAACTTTAGGTTGTCGAGCTCGGCCAACCGGTCGCACAACAGCTTGAGCATGAACCGGTTG
TTGGCGGTGACGATGGTGGCGTCGTGGAGCAGCTGGTTGAGGGTG
Done.