sallet_3.scaffold.fasta.s51.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold68
Parameters: 2 7 7 80 10 50 500
Length:  77513

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--90	14	6.4	14	91	6	121	0	0	45	54	0.99
10--99	3	30.7	3	79	4	94	0	0	43	56	0.99
5855--5895	10	4.3	10	78	12	50	14	2	46	36	1.58
5856--5895	18	2.2	18	95	0	71	15	2	45	37	1.59
7000--7049	14	3.6	14	91	0	82	4	36	30	30	1.76
7040--7069	10	3.0	10	100	0	60	0	30	40	30	1.57
7254--7294	20	2.0	20	100	0	82	34	29	26	9	1.88
9228--9303	24	3.0	24	84	13	82	47	2	39	10	1.52
9228--9285	8	7.1	8	86	11	82	50	1	37	10	1.47
9685--9734	11	4.8	10	82	4	55	50	46	0	4	1.20
9731--9775	19	2.3	19	88	3	63	46	51	0	2	1.13
9723--9779	9	5.9	10	78	13	57	47	50	0	1	1.11
11048--11072	12	2.1	12	100	0	50	8	52	40	0	1.31
11607--11652	14	3.1	15	87	6	67	23	0	69	6	1.11
11664--11705	15	2.8	15	79	13	50	30	7	54	7	1.54
11774--11804	12	2.6	12	94	0	53	6	0	54	38	1.26
11902--11961	17	3.5	17	88	0	84	20	31	18	30	1.96
11948--11980	17	1.9	17	93	0	57	12	42	12	33	1.79
13512--13596	17	5.2	16	87	2	107	37	32	5	23	1.79
13637--13680	8	5.5	8	83	0	61	2	45	22	29	1.65
14331--14362	16	2.0	16	93	0	55	25	3	37	34	1.72
14520--14544	13	1.9	13	100	0	50	48	28	16	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14944--14986	14	3.0	14	84	15	61	25	18	27	27	1.98
15658--15697	16	2.5	17	80	12	57	0	37	0	62	0.95
17075--17184	12	9.9	12	71	16	103	2	31	38	27	1.71
17103--17161	9	5.9	9	78	21	64	1	33	40	23	1.65
17076--17167	21	4.2	21	90	4	130	2	32	39	26	1.68
17076--17184	42	2.5	44	88	8	152	2	32	37	27	1.71
17248--17296	11	4.5	11	77	10	55	10	57	8	24	1.59
17860--17906	18	2.9	16	84	9	60	12	12	57	17	1.65
17887--17931	21	2.3	20	88	11	67	22	8	53	15	1.69
19099--19158	21	2.9	21	68	9	59	15	26	46	11	1.79
19236--19317	24	3.4	24	86	5	103	32	8	41	17	1.79
19496--19535	15	2.7	15	88	0	62	40	30	7	22	1.81
19496--19567	28	2.5	28	88	4	99	38	25	12	23	1.90
20945--20975	16	2.0	15	93	6	53	3	38	19	38	1.68
22463--22509	12	3.9	12	75	10	51	8	34	14	42	1.77
22470--22528	24	2.6	24	86	7	79	6	35	11	45	1.67
23631--23662	11	2.9	11	95	0	55	9	21	37	31	1.85
23695--23735	13	3.2	13	93	3	66	14	43	2	39	1.59
24226--24279	12	4.2	13	73	21	60	1	61	5	31	1.30
24238--24269	17	1.9	17	93	6	57	3	62	3	31	1.26
27705--27732	12	2.3	12	100	0	56	7	14	25	53	1.66
28368--28408	16	2.6	16	96	0	73	24	43	19	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30712--30754	13	3.4	13	96	3	79	32	46	13	6	1.71
33933--33990	18	3.2	18	97	0	107	10	22	32	34	1.88
36745--36787	20	2.2	20	87	8	61	20	0	53	25	1.46
36853--36918	11	6.2	10	81	8	60	51	22	13	12	1.74
36853--36918	22	3.1	21	78	8	71	51	22	13	12	1.74
41144--41180	13	2.7	14	87	4	58	0	18	59	21	1.38
42287--42315	11	2.6	11	100	0	58	0	0	72	27	0.85
43078--43152	38	2.0	37	100	0	141	16	56	16	10	1.66
44536--44590	21	2.7	20	88	5	83	50	1	36	10	1.48
45127--45164	19	2.0	19	100	0	76	26	42	15	15	1.87
46642--46666	12	2.1	12	100	0	50	16	24	24	36	1.94
48148--48217	32	2.2	32	84	0	86	25	44	5	24	1.76
49210--49254	6	7.5	6	87	0	54	0	26	55	17	1.42
49210--49257	24	2.0	23	88	4	69	0	25	58	16	1.38
53752--53784	15	2.2	15	100	0	66	27	0	54	18	1.44
55092--55119	10	2.8	10	100	0	56	0	0	60	39	0.97
62384--62423	13	3.2	13	89	7	64	12	52	15	20	1.74
62390--62423	12	2.8	12	90	4	50	11	50	17	20	1.77
64865--64899	3	11.7	3	87	0	52	34	28	31	5	1.81
64849--64891	15	2.8	16	89	6	63	32	27	32	6	1.84
65031--65067	12	2.9	13	88	8	58	48	0	32	18	1.49
65288--65333	19	2.4	19	92	0	74	21	15	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66153--66220	8	8.8	8	73	12	52	48	48	0	2	1.16
66153--66220	15	4.4	15	83	3	82	48	48	0	2	1.16
68538--68573	14	2.5	15	90	4	56	13	8	44	33	1.74
68756--68785	15	2.0	15	100	0	60	20	20	40	20	1.92
68987--69023	16	2.3	16	95	0	65	32	27	27	13	1.94
69097--69156	28	2.1	28	90	0	93	26	38	13	21	1.90
73971--74059	13	6.9	13	89	2	135	26	3	46	23	1.68
74998--75057	18	3.6	17	73	17	54	26	23	36	13	1.92

Tables:   1

The End!