Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold68
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 77513
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:19 original size:14 final size:14
Alignment explanation
Indices: 1--90 Score: 121
Period size: 14 Copynumber: 6.4 Consensus size: 14
1 GTGTTGGTGTGTTG
1 GTGTTGGTGTGTTG
15 GTGTT-G-GTGTTG
1 GTGTTGGTGTGTTG
27 GTGTTGGTGTGTTG
1 GTGTTGGTGTGTTG
41 GTGTTGGTGTGTTG
1 GTGTTGGTGTGTTG
55 GTGTTGGTGTTGTTG
1 GTGTTGGTG-TGTTG
* *
70 TTGTTGTTGTTGTTG
1 GTGTTGGTG-TGTTG
*
85 TTGTTG
1 GTGTTG
91 TTGTTGTTGC
Statistics
Matches: 71, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
12 11 0.15
13 2 0.03
14 34 0.48
15 24 0.34
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (14 bp):
GTGTTGGTGTGTTG
Left flanking sequence: None
Right flanking sequence: Indices 91 -- 590
TTGTTGTTGCTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTG
CCAATGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGT
GGTGCCATTGGTATCCAATCCGGGTTTCTATAATTATTTAGTTAAGCACTGGGTGCGCCTTCGGA
GTGGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATTGTAATATATAGGATATAT
ACAGGTTCCCTATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACTCAAATCACAC
GACGTATAAGCCGCATTAGGCTATTAAGTAAGCTCGTAAAGCGGCTAACATAAGGAGTTATGTAA
TGCTCGTAAAGTCTTTAGGAAATGAATGGTCGTCGTATAGCTCGTCGTATAGTAGGGTGGTCGTT
TGTTAGAGGGGGCCGTTTTTACATGCAGACCTCTGGGATTTGTTA
Found at i:70 original size:3 final size:3
Alignment explanation
Indices: 10--99 Score: 94
Period size: 3 Copynumber: 30.7 Consensus size: 3
1 GTGTTGGTG
* * * * * * *
10 TGT TGG TGT TGG TGT TGG TGT TGG TG- TGT TGG TGT TGG TG- TGT TGG
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
*
56 TGT TGG TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TG
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TG
100 CTGGAGGTTG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
2 4 0.06
3 67 0.94
ACGTcount: A:0.00, C:0.00, G:0.43, T:0.57
Consensus pattern (3 bp):
TGT
Left flanking sequence: Indices 1 -- 9
GTGTTGGTG
Right flanking sequence: Indices 100 -- 599
CTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGTATCCAATCCGGGTTTCTATAATTATTTAGTTAAGCACTGGGTGCGCCTTCGGAGTGGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATTGTAATATATAGGATATATACAGGTTCC
CTATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACTCAAATCACACGACGTATAA
GCCGCATTAGGCTATTAAGTAAGCTCGTAAAGCGGCTAACATAAGGAGTTATGTAATGCTCGTAA
AGTCTTTAGGAAATGAATGGTCGTCGTATAGCTCGTCGTATAGTAGGGTGGTCGTTTGTTAGAGG
GGGCCGTTTTTACATGCAGACCTCTGGGATTTGTTAGAGGGGGCC
Found at i:5873 original size:10 final size:10
Alignment explanation
Indices: 5855--5895 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
5845 GCGCGGGTGG
*
5855 GTGTGGTGAT
1 GTGTAGTGAT
5865 GTGTAGTGAT
1 GTGTAGTGAT
*
5875 GTG--GCGAT
1 GTGTAGTGAT
5883 GTGTAGTGAT
1 GTGTAGTGAT
5893 GTG
1 GTG
5896 CTGGTGCGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
8 7 0.27
10 19 0.73
ACGTcount: A:0.15, C:0.02, G:0.46, T:0.37
Consensus pattern (10 bp):
GTGTAGTGAT
Left flanking sequence: Indices 5355 -- 5854
CTTGGCCACCAGCTCCTTGTTCGCCAAGCGCGCTTTGATGGTGTCGAACGCGAGCATTGCCACTG
CGTCGTTGTGCCCGCGCTCAGCGGCCTGTTCCACGAGCTCGTTCTCCACCGCCATCAACTGGGGG
TGGGTCGTAGAGGTTTGCGAGCGAATGGCGCCCAAGACCCGTTTGAACGTCATCAAGTCGCGGGC
GTGGGCATACGAGGGGATCTCGATCGCGTCGGGCCGGTCGAGATTGGTGTAGATGGCATCGAGCA
CCGGAAGCATCTTCCGGTAGGTGAGCAGCGAGTCGAAGTCGAAGAGGAGGCGGTTGAGCGTCTTT
TTCTTTGGTAGAAGCGTTTGGATGGATGGTTTCGCTGCAGCAGAGGCTGCTGCTGCTGTGCTCAG
CCATCGTATGGCGGTCCTGAGCATCGTGGGTGGGGTAAGGGTGGTGAGGTGGTTGGTGTTGGGAG
CCCTCGGAGTGGTGTGAGGTTTGATCTGGTGCGGCGCGCGGGTGG
Right flanking sequence: Indices 5896 -- 6395
CTGGTGCGTGTAGAGATGTGTGGGTTGGTTGGTGTGTGCAGTTATGTGCTACAGTGTGTCGAGTT
ATGCTAGGCTTTGTTTGAGTTTGCCCAGTGATGCAGTTGTGTGCTCGTGTGCGTACAATGGTGCC
GCCAGGTGCTGGTCGCTGGGGAAGTCAAAAATACAAGATGAATGATTCAGTTTGCACTTGAACTT
TCAAATAATGTAAAACATTACTATCTAGGTGCGTTATTATATTCGAAGCTTGGAGGTAACATGGT
TCAGCGTAGGTTGCAAAATATGTAGAACGCAGTCGCAAATAATAAGAGCTGTGATGCAATGGGGT
GGAAATGGAGCTAGTGTATAAGCAAATCGCCACTTGATAGAGCTAAATAGGTTTTTTACATGGCT
ATTTTACCACTAGGGTAATGGTTTTCAATTTGATAGTGTCAGGTGATCACAAATCACGTGACCTA
TACCAAAACGAACAGAGGTTCCCCCGTGTTCGTGTTTTCCCAAAA
Found at i:5883 original size:18 final size:18
Alignment explanation
Indices: 5856--5895 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
5846 CGCGGGTGGG
*
5856 TGTGGTGATGTGTAGTGA
1 TGTGGCGATGTGTAGTGA
5874 TGTGGCGATGTGTAGTGA
1 TGTGGCGATGTGTAGTGA
5892 TGTG
1 TGTG
5896 CTGGTGCGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.03, G:0.45, T:0.38
Consensus pattern (18 bp):
TGTGGCGATGTGTAGTGA
Left flanking sequence: Indices 5356 -- 5855
TTGGCCACCAGCTCCTTGTTCGCCAAGCGCGCTTTGATGGTGTCGAACGCGAGCATTGCCACTGC
GTCGTTGTGCCCGCGCTCAGCGGCCTGTTCCACGAGCTCGTTCTCCACCGCCATCAACTGGGGGT
GGGTCGTAGAGGTTTGCGAGCGAATGGCGCCCAAGACCCGTTTGAACGTCATCAAGTCGCGGGCG
TGGGCATACGAGGGGATCTCGATCGCGTCGGGCCGGTCGAGATTGGTGTAGATGGCATCGAGCAC
CGGAAGCATCTTCCGGTAGGTGAGCAGCGAGTCGAAGTCGAAGAGGAGGCGGTTGAGCGTCTTTT
TCTTTGGTAGAAGCGTTTGGATGGATGGTTTCGCTGCAGCAGAGGCTGCTGCTGCTGTGCTCAGC
CATCGTATGGCGGTCCTGAGCATCGTGGGTGGGGTAAGGGTGGTGAGGTGGTTGGTGTTGGGAGC
CCTCGGAGTGGTGTGAGGTTTGATCTGGTGCGGCGCGCGGGTGGG
Right flanking sequence: Indices 5896 -- 6395
CTGGTGCGTGTAGAGATGTGTGGGTTGGTTGGTGTGTGCAGTTATGTGCTACAGTGTGTCGAGTT
ATGCTAGGCTTTGTTTGAGTTTGCCCAGTGATGCAGTTGTGTGCTCGTGTGCGTACAATGGTGCC
GCCAGGTGCTGGTCGCTGGGGAAGTCAAAAATACAAGATGAATGATTCAGTTTGCACTTGAACTT
TCAAATAATGTAAAACATTACTATCTAGGTGCGTTATTATATTCGAAGCTTGGAGGTAACATGGT
TCAGCGTAGGTTGCAAAATATGTAGAACGCAGTCGCAAATAATAAGAGCTGTGATGCAATGGGGT
GGAAATGGAGCTAGTGTATAAGCAAATCGCCACTTGATAGAGCTAAATAGGTTTTTTACATGGCT
ATTTTACCACTAGGGTAATGGTTTTCAATTTGATAGTGTCAGGTGATCACAAATCACGTGACCTA
TACCAAAACGAACAGAGGTTCCCCCGTGTTCGTGTTTTCCCAAAA
Found at i:7022 original size:14 final size:14
Alignment explanation
Indices: 7000--7049 Score: 82
Period size: 14 Copynumber: 3.6 Consensus size: 14
6990 TCTTAAAGTT
*
7000 TGCTGGGCCCTTTC
1 TGCTGGGCCCTATC
*
7014 TGCTCGGCCCTATC
1 TGCTGGGCCCTATC
7028 TGCTGGGCCCTATC
1 TGCTGGGCCCTATC
7042 TGCTGGGC
1 TGCTGGGC
7050 TCTGCTGGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.04, C:0.36, G:0.30, T:0.30
Consensus pattern (14 bp):
TGCTGGGCCCTATC
Left flanking sequence: Indices 6500 -- 6999
ACCACTTGTAATACCACTATATGCACACCACGTCACCACCGTAGGAGAAAACCCGGAAATCAACC
TAAAACTCCATGGACGGGGGCACACTAGTGACAATCGCGTAGGCAGAGCCCAGATAAATGGCAAG
CTCAGCTCTCAGCTCAGCGCTCCGACTCGTAGCCCCATTTTGAGCAAGTAGCATCAACAGTTGGA
AAATGGCACAAGAGTCTGGCAAGGGCGAGGGATAAAGTTCGATAAAGCCCGCAGCGAGTCAGACA
AGACTCACAGATTGCTCTGAGACACCAACCATGCTTCTGTGACTGGGTACTCCACACTGTCGGGA
AGCTTTGTGGTGTCGGGGATATTATTTCGATGTAGACATGCGAGCGCGTCAAATGGTTGCAGGTA
ACTAAAAGTAGTAAAGGCTTAGGAGATGGATTTCTTGGAACAGACAGCAAGGAAATGATATTCTA
GAAGGGGTCGAGTTTGATCACCGGTCTCACAGGGTTCTTAAAGTT
Right flanking sequence: Indices 7050 -- 7549
TCTGCTGGGCTCTGCTGGGCCCGGTTTTGCGATTACGTGATCTATCCGTGTTAGATTTGTGTAAC
AATGGGTGCTGTGGCTGGACCTACGGAGACAAACTCCCACAAAGGTTACGTTGCAGTCCTCGAGA
CATTTCTAAGCCCCTGTTTGCTGTCCACTGAAACGAATATGTATCGTAAAAGCAGACCAAGGCAG
ACACCCGATGCACCCAGGGTGAACAATACGCACCCAGGGTGAACAATACGATGACGGGGGCTTAA
AATGTCCCAAGGCAGGCCTGTCATCGTACTGGCGTTTTTAGAGTGGGTTCGAGGCCCGTCGTTTA
GCCGTGACGCATACGTCAATACCAACGGGCTGGCTGTTCGTGAAGCGAGAAAGAAGTGACTCTAC
AAGCGGTTAGAATCTTTCAGAGTACGCTCTACACTAATCTACGCCGCCCACCCAGGGAGCAACCT
AAAAGTGTCTGTCGGAACCCCACACATTGTCTGCCGAACAATCAA
Found at i:7055 original size:10 final size:10
Alignment explanation
Indices: 7040--7069 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
7030 CTGGGCCCTA
7040 TCTGCTGGGC
1 TCTGCTGGGC
7050 TCTGCTGGGC
1 TCTGCTGGGC
7060 TCTGCTGGGC
1 TCTGCTGGGC
7070 CCGGTTTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.40, T:0.30
Consensus pattern (10 bp):
TCTGCTGGGC
Left flanking sequence: Indices 6540 -- 7039
GTAGGAGAAAACCCGGAAATCAACCTAAAACTCCATGGACGGGGGCACACTAGTGACAATCGCGT
AGGCAGAGCCCAGATAAATGGCAAGCTCAGCTCTCAGCTCAGCGCTCCGACTCGTAGCCCCATTT
TGAGCAAGTAGCATCAACAGTTGGAAAATGGCACAAGAGTCTGGCAAGGGCGAGGGATAAAGTTC
GATAAAGCCCGCAGCGAGTCAGACAAGACTCACAGATTGCTCTGAGACACCAACCATGCTTCTGT
GACTGGGTACTCCACACTGTCGGGAAGCTTTGTGGTGTCGGGGATATTATTTCGATGTAGACATG
CGAGCGCGTCAAATGGTTGCAGGTAACTAAAAGTAGTAAAGGCTTAGGAGATGGATTTCTTGGAA
CAGACAGCAAGGAAATGATATTCTAGAAGGGGTCGAGTTTGATCACCGGTCTCACAGGGTTCTTA
AAGTTTGCTGGGCCCTTTCTGCTCGGCCCTATCTGCTGGGCCCTA
Right flanking sequence: Indices 7070 -- 7569
CCGGTTTTGCGATTACGTGATCTATCCGTGTTAGATTTGTGTAACAATGGGTGCTGTGGCTGGAC
CTACGGAGACAAACTCCCACAAAGGTTACGTTGCAGTCCTCGAGACATTTCTAAGCCCCTGTTTG
CTGTCCACTGAAACGAATATGTATCGTAAAAGCAGACCAAGGCAGACACCCGATGCACCCAGGGT
GAACAATACGCACCCAGGGTGAACAATACGATGACGGGGGCTTAAAATGTCCCAAGGCAGGCCTG
TCATCGTACTGGCGTTTTTAGAGTGGGTTCGAGGCCCGTCGTTTAGCCGTGACGCATACGTCAAT
ACCAACGGGCTGGCTGTTCGTGAAGCGAGAAAGAAGTGACTCTACAAGCGGTTAGAATCTTTCAG
AGTACGCTCTACACTAATCTACGCCGCCCACCCAGGGAGCAACCTAAAAGTGTCTGTCGGAACCC
CACACATTGTCTGCCGAACAATCAACGGCTGAGACCCTTGGTGCG
Found at i:7279 original size:20 final size:20
Alignment explanation
Indices: 7254--7294 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7244 GACACCCGAT
7254 GCACCCAGGGTGAACAATAC
1 GCACCCAGGGTGAACAATAC
7274 GCACCCAGGGTGAACAATAC
1 GCACCCAGGGTGAACAATAC
7294 G
1 G
7295 ATGACGGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.29, G:0.27, T:0.10
Consensus pattern (20 bp):
GCACCCAGGGTGAACAATAC
Left flanking sequence: Indices 6754 -- 7253
CAGACAAGACTCACAGATTGCTCTGAGACACCAACCATGCTTCTGTGACTGGGTACTCCACACTG
TCGGGAAGCTTTGTGGTGTCGGGGATATTATTTCGATGTAGACATGCGAGCGCGTCAAATGGTTG
CAGGTAACTAAAAGTAGTAAAGGCTTAGGAGATGGATTTCTTGGAACAGACAGCAAGGAAATGAT
ATTCTAGAAGGGGTCGAGTTTGATCACCGGTCTCACAGGGTTCTTAAAGTTTGCTGGGCCCTTTC
TGCTCGGCCCTATCTGCTGGGCCCTATCTGCTGGGCTCTGCTGGGCTCTGCTGGGCCCGGTTTTG
CGATTACGTGATCTATCCGTGTTAGATTTGTGTAACAATGGGTGCTGTGGCTGGACCTACGGAGA
CAAACTCCCACAAAGGTTACGTTGCAGTCCTCGAGACATTTCTAAGCCCCTGTTTGCTGTCCACT
GAAACGAATATGTATCGTAAAAGCAGACCAAGGCAGACACCCGAT
Right flanking sequence: Indices 7295 -- 7794
ATGACGGGGGCTTAAAATGTCCCAAGGCAGGCCTGTCATCGTACTGGCGTTTTTAGAGTGGGTTC
GAGGCCCGTCGTTTAGCCGTGACGCATACGTCAATACCAACGGGCTGGCTGTTCGTGAAGCGAGA
AAGAAGTGACTCTACAAGCGGTTAGAATCTTTCAGAGTACGCTCTACACTAATCTACGCCGCCCA
CCCAGGGAGCAACCTAAAAGTGTCTGTCGGAACCCCACACATTGTCTGCCGAACAATCAACGGCT
GAGACCCTTGGTGCGTCAGCCAGGGCTGAGAGCAATGTCAACCTCGGGGAACCACCGCAACCGAA
AGCGTTCGTGTCAAACTACCCCGTAAGCCCTCCGTATTCGCTGTTTCCCCCCGCCACCGGTGCCT
CCACCAGAATCCTGCATGGTACTCTTAGTCACCATCGCCTTCACCAGCCGTATACACTCCCGCCA
AAGGGAGGCCACAATAGCAGAACAAAGGTGGATCGCCATGCACGG
Found at i:9274 original size:24 final size:24
Alignment explanation
Indices: 9228--9303 Score: 82
Period size: 24 Copynumber: 3.0 Consensus size: 24
9218 TGAAGGTGAA
*
9228 AAATGGACAAA-GGAGAGAGATGGAG
1 AAATGGAGAAATGGAGA-A-ATGGAG
9253 AAATGGAGAAATGGAGAAATGGAG
1 AAATGGAGAAATGGAGAAATGGAG
9277 AAATGGAGAGAACTGGAGGGAAATGGA
1 AAATGGAGA-AA-TGGA--GAAATGGA
9304 AATAAGTAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
24 15 0.33
25 13 0.29
26 9 0.20
28 8 0.18
ACGTcount: A:0.47, C:0.03, G:0.39, T:0.11
Consensus pattern (24 bp):
AAATGGAGAAATGGAGAAATGGAG
Left flanking sequence: Indices 8728 -- 9227
GACGGCGCACGAATGAGAGTAAAAAACACCAAGATGCGGGTGGTGGTGGCCAAGGCTCGGGGGGT
GGCAGCCTATTGTTGCCTGGGCTCGGCTCGCTTCGCTCTCGGCTCTGGCTGGATTGGGCCGAGAC
CCGGTTGACAGGCCGTTGGTATGCACACGCTAACACTGCCGAATCGGGCAAGAGGTTCCAGCCCG
GGCGAGGTGACACAAGCAACGAAACAGAGTTTGGGGCGGAGGAAAAAGGTATTAGGTTTGGAGGG
GCCGCAACAACGATCTGGGCGATGGGGCGAAGGGCGGCGGGGGTGGGGAAGAGGAGAACGGTAGC
CGTGGGTATAGGGTAGTGGTGAATGGGTGGTGATTAGGTGGGTGGTGTGTGGTGTGTGGGTGGTG
TGGAAGTGGTTAGCGGTGGTGGGTTCAGGGGTGGATCTTGTGAGAGTTACCGAGGCGGGAGCGTA
AGGGTCCAGGGGAAGCGAGAAAGTTTAAGAGCGGTTGAAGGTGAA
Right flanking sequence: Indices 9304 -- 9803
AATAAGTAGAGAAGTGAGATGGTTCATTGTAAAGGGTAGTATTACTAACGGGATTAGACAAACGA
GAGAAAGTTTAAGAAACGGTTGAGTAGGTGAAAATGGAGACAAACGGAGAGAAATGGAAGAAATG
GAAATAAGTGGCTAAGTAAAATGGTTCAGAGTAAAGGTTAGTATTACAACCAGAATTATACAAAC
CAGTAGCGTGACTTTCAGTGTAGAGAATAGAATTGTGTACCCACCCTCCCGAACTTGTCTTAATC
CCTCTCAGACCACCCAGAGTGCCCAAACAGAGCCAGAAAACTACACTACCATCACACCATCGTCA
CACCACCGTCAAAACAACCCCCCAATACCATAATCCACCACTCAACCGCATCATCACACCCAACA
CCACCCAAAACCAACCCAAAACCAATTCAAAACCACCCAAACTCCCCACAAACCCCACAAACCCC
CACAAAAACCACAAACCACCAGAACGACCCTAAAATCTACGCCAG
Found at i:9303 original size:10 final size:8
Alignment explanation
Indices: 9228--9285 Score: 82
Period size: 8 Copynumber: 7.1 Consensus size: 8
9218 TGAAGGTGAA
*
9228 AAATGGAC
1 AAATGGAG
9236 AAA-GGAG
1 AAATGGAG
9243 AGAGATGGAG
1 A-A-ATGGAG
9253 AAATGGAG
1 AAATGGAG
9261 AAATGGAG
1 AAATGGAG
9269 AAATGGAG
1 AAATGGAG
9277 AAATGGAG
1 AAATGGAG
9285 A
1 A
9286 GAACTGGAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
7 4 0.09
8 35 0.76
9 2 0.04
10 5 0.11
ACGTcount: A:0.50, C:0.02, G:0.38, T:0.10
Consensus pattern (8 bp):
AAATGGAG
Left flanking sequence: Indices 8728 -- 9227
GACGGCGCACGAATGAGAGTAAAAAACACCAAGATGCGGGTGGTGGTGGCCAAGGCTCGGGGGGT
GGCAGCCTATTGTTGCCTGGGCTCGGCTCGCTTCGCTCTCGGCTCTGGCTGGATTGGGCCGAGAC
CCGGTTGACAGGCCGTTGGTATGCACACGCTAACACTGCCGAATCGGGCAAGAGGTTCCAGCCCG
GGCGAGGTGACACAAGCAACGAAACAGAGTTTGGGGCGGAGGAAAAAGGTATTAGGTTTGGAGGG
GCCGCAACAACGATCTGGGCGATGGGGCGAAGGGCGGCGGGGGTGGGGAAGAGGAGAACGGTAGC
CGTGGGTATAGGGTAGTGGTGAATGGGTGGTGATTAGGTGGGTGGTGTGTGGTGTGTGGGTGGTG
TGGAAGTGGTTAGCGGTGGTGGGTTCAGGGGTGGATCTTGTGAGAGTTACCGAGGCGGGAGCGTA
AGGGTCCAGGGGAAGCGAGAAAGTTTAAGAGCGGTTGAAGGTGAA
Right flanking sequence: Indices 9286 -- 9785
GAACTGGAGGGAAATGGAAATAAGTAGAGAAGTGAGATGGTTCATTGTAAAGGGTAGTATTACTA
ACGGGATTAGACAAACGAGAGAAAGTTTAAGAAACGGTTGAGTAGGTGAAAATGGAGACAAACGG
AGAGAAATGGAAGAAATGGAAATAAGTGGCTAAGTAAAATGGTTCAGAGTAAAGGTTAGTATTAC
AACCAGAATTATACAAACCAGTAGCGTGACTTTCAGTGTAGAGAATAGAATTGTGTACCCACCCT
CCCGAACTTGTCTTAATCCCTCTCAGACCACCCAGAGTGCCCAAACAGAGCCAGAAAACTACACT
ACCATCACACCATCGTCACACCACCGTCAAAACAACCCCCCAATACCATAATCCACCACTCAACC
GCATCATCACACCCAACACCACCCAAAACCAACCCAAAACCAATTCAAAACCACCCAAACTCCCC
ACAAACCCCACAAACCCCCACAAAAACCACAAACCACCAGAACGA
Found at i:9712 original size:11 final size:10
Alignment explanation
Indices: 9685--9734 Score: 55
Period size: 11 Copynumber: 4.8 Consensus size: 10
9675 CGCATCATCA
*
9685 CACCCAACAC
1 CACCCAAAAC
9695 CACCCAAAAC
1 CACCCAAAAC
9705 CAACCCAAAAC
1 C-ACCCAAAAC
**
9716 CAATTCAAAAC
1 C-ACCCAAAAC
9727 CACCCAAA
1 CACCCAAA
9735 CTCCCCACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 15 0.44
11 19 0.56
ACGTcount: A:0.50, C:0.46, G:0.00, T:0.04
Consensus pattern (10 bp):
CACCCAAAAC
Left flanking sequence: Indices 9185 -- 9684
GGTCCAGGGGAAGCGAGAAAGTTTAAGAGCGGTTGAAGGTGAAAAATGGACAAAGGAGAGAGATG
GAGAAATGGAGAAATGGAGAAATGGAGAAATGGAGAGAACTGGAGGGAAATGGAAATAAGTAGAG
AAGTGAGATGGTTCATTGTAAAGGGTAGTATTACTAACGGGATTAGACAAACGAGAGAAAGTTTA
AGAAACGGTTGAGTAGGTGAAAATGGAGACAAACGGAGAGAAATGGAAGAAATGGAAATAAGTGG
CTAAGTAAAATGGTTCAGAGTAAAGGTTAGTATTACAACCAGAATTATACAAACCAGTAGCGTGA
CTTTCAGTGTAGAGAATAGAATTGTGTACCCACCCTCCCGAACTTGTCTTAATCCCTCTCAGACC
ACCCAGAGTGCCCAAACAGAGCCAGAAAACTACACTACCATCACACCATCGTCACACCACCGTCA
AAACAACCCCCCAATACCATAATCCACCACTCAACCGCATCATCA
Right flanking sequence: Indices 9735 -- 10234
CTCCCCACAAACCCCACAAACCCCCACAAAAACCACAAACCACCAGAACGACCCTAAAATCTACG
CCAGAACCACCCCTACTACCCCACTTCCTCTTATCATAACATTAGTACATCAGTAGCCCCCATAA
TCTATAAACGAATCCATACTCGGCTGGGGCCCCTCAAGCACCGGCCCGCGGTCCAACGGGCCAAA
CTCAAGCTCGAGCCCGCCGTCCACAGGGTACCCGCTCTCCAGCTGGCCCCCCATCAGCTGGTGGG
TGTACAGCGCCAGCGGGTCCCCGGGGTTCGCCGCGGTCAGCGGCAGCTCCAGCCCGCGCCGGGGG
TCCAAGTCGCCAAACGCAAAGAAGTCGGGGGTGGCGGGACTCGCGTGCACCGGCCCCGACCCCGC
CAGCGCCGGCAGGATCGTGTCGTCCATCGGGAGCATCGGCAGATACCCAAGGGTTGCGAGCTCGG
GCCCGTGACCCATGGTTGCGAGCTCGGCGCCGAGCGCGAGCTCCA
Found at i:9761 original size:19 final size:19
Alignment explanation
Indices: 9731--9775 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
9721 CAAAACCACC
**
9731 CAAACTCCCCACAAACCCCA
1 CAAAC-CCCCACAAAAACCA
9751 CAAACCCCCACAAAAACCA
1 CAAACCCCCACAAAAACCA
9770 CAAACC
1 CAAACC
9776 ACCAGAACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.47, C:0.51, G:0.00, T:0.02
Consensus pattern (19 bp):
CAAACCCCCACAAAAACCA
Left flanking sequence: Indices 9231 -- 9730
TGGACAAAGGAGAGAGATGGAGAAATGGAGAAATGGAGAAATGGAGAAATGGAGAGAACTGGAGG
GAAATGGAAATAAGTAGAGAAGTGAGATGGTTCATTGTAAAGGGTAGTATTACTAACGGGATTAG
ACAAACGAGAGAAAGTTTAAGAAACGGTTGAGTAGGTGAAAATGGAGACAAACGGAGAGAAATGG
AAGAAATGGAAATAAGTGGCTAAGTAAAATGGTTCAGAGTAAAGGTTAGTATTACAACCAGAATT
ATACAAACCAGTAGCGTGACTTTCAGTGTAGAGAATAGAATTGTGTACCCACCCTCCCGAACTTG
TCTTAATCCCTCTCAGACCACCCAGAGTGCCCAAACAGAGCCAGAAAACTACACTACCATCACAC
CATCGTCACACCACCGTCAAAACAACCCCCCAATACCATAATCCACCACTCAACCGCATCATCAC
ACCCAACACCACCCAAAACCAACCCAAAACCAATTCAAAACCACC
Right flanking sequence: Indices 9776 -- 10275
ACCAGAACGACCCTAAAATCTACGCCAGAACCACCCCTACTACCCCACTTCCTCTTATCATAACA
TTAGTACATCAGTAGCCCCCATAATCTATAAACGAATCCATACTCGGCTGGGGCCCCTCAAGCAC
CGGCCCGCGGTCCAACGGGCCAAACTCAAGCTCGAGCCCGCCGTCCACAGGGTACCCGCTCTCCA
GCTGGCCCCCCATCAGCTGGTGGGTGTACAGCGCCAGCGGGTCCCCGGGGTTCGCCGCGGTCAGC
GGCAGCTCCAGCCCGCGCCGGGGGTCCAAGTCGCCAAACGCAAAGAAGTCGGGGGTGGCGGGACT
CGCGTGCACCGGCCCCGACCCCGCCAGCGCCGGCAGGATCGTGTCGTCCATCGGGAGCATCGGCA
GATACCCAAGGGTTGCGAGCTCGGGCCCGTGACCCATGGTTGCGAGCTCGGCGCCGAGCGCGAGC
TCCAGCGCCAGCCCCGCGAGCACCGCGGGGGGCAGCGCCAGCGTC
Found at i:9779 original size:10 final size:10
Alignment explanation
Indices: 9723--9779 Score: 57
Period size: 9 Copynumber: 5.9 Consensus size: 10
9713 AACCAATTCA
9723 AAACCACC-C
1 AAACCACCAC
*
9732 AAACTCCCCAC
1 AAAC-CACCAC
9743 AAACC-CCAC
1 AAACCACCAC
*
9752 AAACCCCCAC
1 AAACCACCAC
*
9762 AAA-AACCAC
1 AAACCACCAC
9771 AAACCACCA
1 AAACCACCA
9780 GAACGACCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 20 0.50
10 15 0.38
11 5 0.12
ACGTcount: A:0.47, C:0.51, G:0.00, T:0.02
Consensus pattern (10 bp):
AAACCACCAC
Left flanking sequence: Indices 9223 -- 9722
GTGAAAAATGGACAAAGGAGAGAGATGGAGAAATGGAGAAATGGAGAAATGGAGAAATGGAGAGA
ACTGGAGGGAAATGGAAATAAGTAGAGAAGTGAGATGGTTCATTGTAAAGGGTAGTATTACTAAC
GGGATTAGACAAACGAGAGAAAGTTTAAGAAACGGTTGAGTAGGTGAAAATGGAGACAAACGGAG
AGAAATGGAAGAAATGGAAATAAGTGGCTAAGTAAAATGGTTCAGAGTAAAGGTTAGTATTACAA
CCAGAATTATACAAACCAGTAGCGTGACTTTCAGTGTAGAGAATAGAATTGTGTACCCACCCTCC
CGAACTTGTCTTAATCCCTCTCAGACCACCCAGAGTGCCCAAACAGAGCCAGAAAACTACACTAC
CATCACACCATCGTCACACCACCGTCAAAACAACCCCCCAATACCATAATCCACCACTCAACCGC
ATCATCACACCCAACACCACCCAAAACCAACCCAAAACCAATTCA
Right flanking sequence: Indices 9780 -- 10279
GAACGACCCTAAAATCTACGCCAGAACCACCCCTACTACCCCACTTCCTCTTATCATAACATTAG
TACATCAGTAGCCCCCATAATCTATAAACGAATCCATACTCGGCTGGGGCCCCTCAAGCACCGGC
CCGCGGTCCAACGGGCCAAACTCAAGCTCGAGCCCGCCGTCCACAGGGTACCCGCTCTCCAGCTG
GCCCCCCATCAGCTGGTGGGTGTACAGCGCCAGCGGGTCCCCGGGGTTCGCCGCGGTCAGCGGCA
GCTCCAGCCCGCGCCGGGGGTCCAAGTCGCCAAACGCAAAGAAGTCGGGGGTGGCGGGACTCGCG
TGCACCGGCCCCGACCCCGCCAGCGCCGGCAGGATCGTGTCGTCCATCGGGAGCATCGGCAGATA
CCCAAGGGTTGCGAGCTCGGGCCCGTGACCCATGGTTGCGAGCTCGGCGCCGAGCGCGAGCTCCA
GCGCCAGCCCCGCGAGCACCGCGGGGGGCAGCGCCAGCGTCGCCT
Found at i:11063 original size:12 final size:12
Alignment explanation
Indices: 11048--11072 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11038 GACGCGAGCG
11048 CGGGCGCCGACC
1 CGGGCGCCGACC
11060 CGGGCGCCGACC
1 CGGGCGCCGACC
11072 C
1 C
11073 CGCCCCGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.52, G:0.40, T:0.00
Consensus pattern (12 bp):
CGGGCGCCGACC
Left flanking sequence: Indices 10548 -- 11047
CGCCAGCAGCACCTGCTGGCCCTCGCTGAAGTCGTCGCAGATCAGCCACTGGTTCAGGCTCAGGT
GGGCCCGGTTGAAAAAGAACACCGAGAACTTGGGCTGGGCCAGGAGGGTCACCCGGAGCTCGGCG
TGGTTCTCCAGCACCCCGTTGTTGAGAAGGGACGCCCCGACAATCAGCAGCACCGGGTAGAAGAT
CCGAAAGAGGATCTTGGCGTTGTTGGTGATGGCACTGAAAAAGTAGTTGATTTCGTAGTTTTTCT
TCAGGAGAATGACAAGAAGGTCCACCGAGTCCATCATCAGGTGCACGGTGAACGGCAGCAAGTTG
ACGAACTGGCGGCGCATGCGGTCCACGTCGTGGTGGCCGCTCTTGACCCGCTGCCACAGCCCCAC
CAGGAGCAGCAGGCAGTCGATGAGGCAGTACTTCAGGTTGATGTCGACGGCGGTGCCCGGCGGGG
TCGACGCCCCCGGCTGGGGGGGCAGCGGGTGCGCCGACGCGAGCG
Right flanking sequence: Indices 11073 -- 11572
CGCCCCGAAGGACGCGGGCGCCGAGAGGGCGCCGTAGGCGGAGGAGGAGAGGGGCGCCAGCCCCG
GGGCAGCGCCCGCCTGGGCCTTCATCTTCTCCACCTTGCGCAACTTGGCGCGGCGGTTCTGGAAC
CAGATCCGAACCGCCTTCTCCAGCATCCCCGTGCGGGACGCCATGTGTTTGCGGTGGTCGGGCAG
CGGGTTGTGGTTGTGGTCGAACTCCTGGAGGAGGTAGTCGAGCACCTCGCCCAGGGCGCGGGTGC
GTTTTGCGGCGGCAGGACCCCGGTCGTCGTTCATCCACGAGTGGTGTAGGGACAAAAAAACCGGT
GGGCATGATTTGGCGGCGCTGCGAGGTGCAGAGTGCACACAGCGGAGGTGCAGAGTATTTTTTGG
GGCCGAAAAAATATGGGCGTGGGTGTCTGCAAGGGTAAAGCGGATCATGCTCGCCGCTCGATAAG
TGCGGGAGGCGGGGAGGAGTGCAGGGTGGGGGAGGCGGTGGGGGT
Found at i:11632 original size:14 final size:15
Alignment explanation
Indices: 11607--11652 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
11597 AGAGCGAGGA
11607 GGAGGAGGGAAGGGT
1 GGAGGAGGGAAGGGT
11622 GGAGG-GGGAAGGGT
1 GGAGGAGGGAAGGGT
* *
11636 GGAGGAGAGAGGGGT
1 GGAGGAGGGAAGGGT
11651 GG
1 GG
11653 GGAAAGGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 14 0.50
15 14 0.50
ACGTcount: A:0.24, C:0.00, G:0.70, T:0.07
Consensus pattern (15 bp):
GGAGGAGGGAAGGGT
Left flanking sequence: Indices 11107 -- 11606
TAGGCGGAGGAGGAGAGGGGCGCCAGCCCCGGGGCAGCGCCCGCCTGGGCCTTCATCTTCTCCAC
CTTGCGCAACTTGGCGCGGCGGTTCTGGAACCAGATCCGAACCGCCTTCTCCAGCATCCCCGTGC
GGGACGCCATGTGTTTGCGGTGGTCGGGCAGCGGGTTGTGGTTGTGGTCGAACTCCTGGAGGAGG
TAGTCGAGCACCTCGCCCAGGGCGCGGGTGCGTTTTGCGGCGGCAGGACCCCGGTCGTCGTTCAT
CCACGAGTGGTGTAGGGACAAAAAAACCGGTGGGCATGATTTGGCGGCGCTGCGAGGTGCAGAGT
GCACACAGCGGAGGTGCAGAGTATTTTTTGGGGCCGAAAAAATATGGGCGTGGGTGTCTGCAAGG
GTAAAGCGGATCATGCTCGCCGCTCGATAAGTGCGGGAGGCGGGGAGGAGTGCAGGGTGGGGGAG
GCGGTGGGGGTGGTGCGTGGGTAGGGTAGTGGGGGAGAGCGAGGA
Right flanking sequence: Indices 11653 -- 12152
GGAAAGGGGTGGAGGAGAGAGAGTGTGAGGGAAGAGCGTGCGAGGAGAGAGCGAGGCGGGTGTGA
GGGGTGAGTGTAGTGTGACCGTGGGTGGGGAGATGGTGGGAAGGCAGTGGTTGGCCTGGGTGTAG
TGGTGGGTGTAGTTGTGGGTGTGGGCCTATTTTGGCCTATTGGGTGTGTGTCCACCTAGTTAGTG
TAGTCCTACTAATGCTTTACCAATGCTATATGGTCATGGTTTCTACGAATTACTAGTTCCTGTGG
ACACTCAGTTCCTATGGACACTCAGTTCCTACGGACTCCCAGTTCCTATTGCCTCCCAGTTCCCA
TTGGCTCTTAGTCTGGCTCACTGGCTTTATTGGCTATATTCGTGCTCCGGCTTTCGGGCTCTATT
CTGGCATTCTGGCTCTATGGCTCCCAGCTCTACTGGCTTTATTCTGGCTCAGTCTGTGTCCTACA
TACCTCCACTTTCTCTCGTCTTCACTTCACCCTACCTTTCCACCC
Found at i:11703 original size:15 final size:15
Alignment explanation
Indices: 11664--11705 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
11654 GAAAGGGGTG
* *
11664 GAGGAGAGAGAGTGT
1 GAGGAGAGAGCGTGC
11679 GAGG-GAAGAGCGTGC
1 GAGGAG-AGAGCGTGC
11694 GAGGAGAGAGCG
1 GAGGAGAGAGCG
11706 AGGCGGGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.31, C:0.07, G:0.55, T:0.07
Consensus pattern (15 bp):
GAGGAGAGAGCGTGC
Left flanking sequence: Indices 11164 -- 11663
TTCTCCACCTTGCGCAACTTGGCGCGGCGGTTCTGGAACCAGATCCGAACCGCCTTCTCCAGCAT
CCCCGTGCGGGACGCCATGTGTTTGCGGTGGTCGGGCAGCGGGTTGTGGTTGTGGTCGAACTCCT
GGAGGAGGTAGTCGAGCACCTCGCCCAGGGCGCGGGTGCGTTTTGCGGCGGCAGGACCCCGGTCG
TCGTTCATCCACGAGTGGTGTAGGGACAAAAAAACCGGTGGGCATGATTTGGCGGCGCTGCGAGG
TGCAGAGTGCACACAGCGGAGGTGCAGAGTATTTTTTGGGGCCGAAAAAATATGGGCGTGGGTGT
CTGCAAGGGTAAAGCGGATCATGCTCGCCGCTCGATAAGTGCGGGAGGCGGGGAGGAGTGCAGGG
TGGGGGAGGCGGTGGGGGTGGTGCGTGGGTAGGGTAGTGGGGGAGAGCGAGGAGGAGGAGGGAAG
GGTGGAGGGGGAAGGGTGGAGGAGAGAGGGGTGGGGAAAGGGGTG
Right flanking sequence: Indices 11706 -- 12205
AGGCGGGTGTGAGGGGTGAGTGTAGTGTGACCGTGGGTGGGGAGATGGTGGGAAGGCAGTGGTTG
GCCTGGGTGTAGTGGTGGGTGTAGTTGTGGGTGTGGGCCTATTTTGGCCTATTGGGTGTGTGTCC
ACCTAGTTAGTGTAGTCCTACTAATGCTTTACCAATGCTATATGGTCATGGTTTCTACGAATTAC
TAGTTCCTGTGGACACTCAGTTCCTATGGACACTCAGTTCCTACGGACTCCCAGTTCCTATTGCC
TCCCAGTTCCCATTGGCTCTTAGTCTGGCTCACTGGCTTTATTGGCTATATTCGTGCTCCGGCTT
TCGGGCTCTATTCTGGCATTCTGGCTCTATGGCTCCCAGCTCTACTGGCTTTATTCTGGCTCAGT
CTGTGTCCTACATACCTCCACTTTCTCTCGTCTTCACTTCACCCTACCTTTCCACCCCTTCATCC
CCGTCCCTCACCTACACCCCATGCACCTGGCGATGGACTCTGCAC
Found at i:11791 original size:12 final size:12
Alignment explanation
Indices: 11774--11804 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
11764 GTGGTTGGCC
11774 TGGGTGTAGTGG
1 TGGGTGTAGTGG
*
11786 TGGGTGTAGTTG
1 TGGGTGTAGTGG
11798 TGGGTGT
1 TGGGTGT
11805 GGGCCTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.00, G:0.55, T:0.39
Consensus pattern (12 bp):
TGGGTGTAGTGG
Left flanking sequence: Indices 11274 -- 11773
GTGGTTGTGGTCGAACTCCTGGAGGAGGTAGTCGAGCACCTCGCCCAGGGCGCGGGTGCGTTTTG
CGGCGGCAGGACCCCGGTCGTCGTTCATCCACGAGTGGTGTAGGGACAAAAAAACCGGTGGGCAT
GATTTGGCGGCGCTGCGAGGTGCAGAGTGCACACAGCGGAGGTGCAGAGTATTTTTTGGGGCCGA
AAAAATATGGGCGTGGGTGTCTGCAAGGGTAAAGCGGATCATGCTCGCCGCTCGATAAGTGCGGG
AGGCGGGGAGGAGTGCAGGGTGGGGGAGGCGGTGGGGGTGGTGCGTGGGTAGGGTAGTGGGGGAG
AGCGAGGAGGAGGAGGGAAGGGTGGAGGGGGAAGGGTGGAGGAGAGAGGGGTGGGGAAAGGGGTG
GAGGAGAGAGAGTGTGAGGGAAGAGCGTGCGAGGAGAGAGCGAGGCGGGTGTGAGGGGTGAGTGT
AGTGTGACCGTGGGTGGGGAGATGGTGGGAAGGCAGTGGTTGGCC
Right flanking sequence: Indices 11805 -- 12304
GGGCCTATTTTGGCCTATTGGGTGTGTGTCCACCTAGTTAGTGTAGTCCTACTAATGCTTTACCA
ATGCTATATGGTCATGGTTTCTACGAATTACTAGTTCCTGTGGACACTCAGTTCCTATGGACACT
CAGTTCCTACGGACTCCCAGTTCCTATTGCCTCCCAGTTCCCATTGGCTCTTAGTCTGGCTCACT
GGCTTTATTGGCTATATTCGTGCTCCGGCTTTCGGGCTCTATTCTGGCATTCTGGCTCTATGGCT
CCCAGCTCTACTGGCTTTATTCTGGCTCAGTCTGTGTCCTACATACCTCCACTTTCTCTCGTCTT
CACTTCACCCTACCTTTCCACCCCTTCATCCCCGTCCCTCACCTACACCCCATGCACCTGGCGAT
GGACTCTGCACGCGTTAGCACTGATTGGGCCGGAACGTCGCGGTGGATGCAGTGAATGTGATGAA
AATGCCCCGGGCGGGAAGTGCACGAGCGGTGCAGCTGTGGTGCAC
Found at i:11924 original size:17 final size:17
Alignment explanation
Indices: 11902--11961 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
11892 ACGAATTACT
*
11902 AGTTCCTGTGGACACTC
1 AGTTCCTATGGACACTC
11919 AGTTCCTATGGACACTC
1 AGTTCCTATGGACACTC
* * *
11936 AGTTCCTACGGACTCCC
1 AGTTCCTATGGACACTC
11953 AGTTCCTAT
1 AGTTCCTAT
11962 TGCCTCCCAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.20, C:0.32, G:0.18, T:0.30
Consensus pattern (17 bp):
AGTTCCTATGGACACTC
Left flanking sequence: Indices 11402 -- 11901
ATGATTTGGCGGCGCTGCGAGGTGCAGAGTGCACACAGCGGAGGTGCAGAGTATTTTTTGGGGCC
GAAAAAATATGGGCGTGGGTGTCTGCAAGGGTAAAGCGGATCATGCTCGCCGCTCGATAAGTGCG
GGAGGCGGGGAGGAGTGCAGGGTGGGGGAGGCGGTGGGGGTGGTGCGTGGGTAGGGTAGTGGGGG
AGAGCGAGGAGGAGGAGGGAAGGGTGGAGGGGGAAGGGTGGAGGAGAGAGGGGTGGGGAAAGGGG
TGGAGGAGAGAGAGTGTGAGGGAAGAGCGTGCGAGGAGAGAGCGAGGCGGGTGTGAGGGGTGAGT
GTAGTGTGACCGTGGGTGGGGAGATGGTGGGAAGGCAGTGGTTGGCCTGGGTGTAGTGGTGGGTG
TAGTTGTGGGTGTGGGCCTATTTTGGCCTATTGGGTGTGTGTCCACCTAGTTAGTGTAGTCCTAC
TAATGCTTTACCAATGCTATATGGTCATGGTTTCTACGAATTACT
Right flanking sequence: Indices 11962 -- 12461
TGCCTCCCAGTTCCCATTGGCTCTTAGTCTGGCTCACTGGCTTTATTGGCTATATTCGTGCTCCG
GCTTTCGGGCTCTATTCTGGCATTCTGGCTCTATGGCTCCCAGCTCTACTGGCTTTATTCTGGCT
CAGTCTGTGTCCTACATACCTCCACTTTCTCTCGTCTTCACTTCACCCTACCTTTCCACCCCTTC
ATCCCCGTCCCTCACCTACACCCCATGCACCTGGCGATGGACTCTGCACGCGTTAGCACTGATTG
GGCCGGAACGTCGCGGTGGATGCAGTGAATGTGATGAAAATGCCCCGGGCGGGAAGTGCACGAGC
GGTGCAGCTGTGGTGCACAGGAGTGCGGCCGCACGGTGACTCCGCTGGAACCGTGGGGCACCTGG
GGAGCGTCACAGGTGCGTTAGGGCCGCGGATAGGTGAGTGGTGACTACAAGCCCACCAGAGCATG
TGGCTAGACTTGACCTCCTTAGTTCCTCTCTTTTTCTAACGCTCT
Found at i:11968 original size:17 final size:17
Alignment explanation
Indices: 11948--11980 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11938 TTCCTACGGA
*
11948 CTCCCAGTTCCTATTGC
1 CTCCCAGTTCCCATTGC
11965 CTCCCAGTTCCCATTG
1 CTCCCAGTTCCCATTG
11981 GCTCTTAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.42, G:0.12, T:0.33
Consensus pattern (17 bp):
CTCCCAGTTCCCATTGC
Left flanking sequence: Indices 11448 -- 11947
CAGAGTATTTTTTGGGGCCGAAAAAATATGGGCGTGGGTGTCTGCAAGGGTAAAGCGGATCATGC
TCGCCGCTCGATAAGTGCGGGAGGCGGGGAGGAGTGCAGGGTGGGGGAGGCGGTGGGGGTGGTGC
GTGGGTAGGGTAGTGGGGGAGAGCGAGGAGGAGGAGGGAAGGGTGGAGGGGGAAGGGTGGAGGAG
AGAGGGGTGGGGAAAGGGGTGGAGGAGAGAGAGTGTGAGGGAAGAGCGTGCGAGGAGAGAGCGAG
GCGGGTGTGAGGGGTGAGTGTAGTGTGACCGTGGGTGGGGAGATGGTGGGAAGGCAGTGGTTGGC
CTGGGTGTAGTGGTGGGTGTAGTTGTGGGTGTGGGCCTATTTTGGCCTATTGGGTGTGTGTCCAC
CTAGTTAGTGTAGTCCTACTAATGCTTTACCAATGCTATATGGTCATGGTTTCTACGAATTACTA
GTTCCTGTGGACACTCAGTTCCTATGGACACTCAGTTCCTACGGA
Right flanking sequence: Indices 11981 -- 12480
GCTCTTAGTCTGGCTCACTGGCTTTATTGGCTATATTCGTGCTCCGGCTTTCGGGCTCTATTCTG
GCATTCTGGCTCTATGGCTCCCAGCTCTACTGGCTTTATTCTGGCTCAGTCTGTGTCCTACATAC
CTCCACTTTCTCTCGTCTTCACTTCACCCTACCTTTCCACCCCTTCATCCCCGTCCCTCACCTAC
ACCCCATGCACCTGGCGATGGACTCTGCACGCGTTAGCACTGATTGGGCCGGAACGTCGCGGTGG
ATGCAGTGAATGTGATGAAAATGCCCCGGGCGGGAAGTGCACGAGCGGTGCAGCTGTGGTGCACA
GGAGTGCGGCCGCACGGTGACTCCGCTGGAACCGTGGGGCACCTGGGGAGCGTCACAGGTGCGTT
AGGGCCGCGGATAGGTGAGTGGTGACTACAAGCCCACCAGAGCATGTGGCTAGACTTGACCTCCT
TAGTTCCTCTCTTTTTCTAACGCTCTTCTCTTTCTCCTTTTCTGT
Found at i:13537 original size:16 final size:16
Alignment explanation
Indices: 13512--13596 Score: 107
Period size: 17 Copynumber: 5.2 Consensus size: 16
13502 AAAAAGTATC
13512 CTCTACACTAACGATA
1 CTCTACACTAACGATA
* *
13528 CTCCACACTAACAATA
1 CTCTACACTAACGATA
*
13544 CTCTACACTAACTGAGA
1 CTCTACACTAAC-GATA
*
13561 CTCTACACTAACTGAGA
1 CTCTACACTAAC-GATA
*
13578 CTCTACACTAACAATA
1 CTCTACACTAACGATA
13594 CTC
1 CTC
13597 ACTAATGATA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
16 30 0.49
17 31 0.51
ACGTcount: A:0.38, C:0.33, G:0.06, T:0.24
Consensus pattern (16 bp):
CTCTACACTAACGATA
Left flanking sequence: Indices 13012 -- 13511
CGGTGGCACGAGGTGGGACAAGGGAAGGCATGAAGTGGTGAAAAAAGGTGGTTTAGAGGGTTTGG
TGAGTGTAGAGAGCGGTTTGGATGCGTTAGTGGCCGGTTCCACCGCCTTTCCTGCCTTCTTTTTG
GGCCCTCCCCACCGGTGGTGATCGACCAATCGGGACACAGCACGGGCCCAGATGGCCACAAAACG
CCCGATGAGTAAGCGTGGACAGCCAGAAGGGGGTTTAGTAAAGAAGGAGTAAAGAGAGAACGGTG
CCAAGCATGGATCTTGGCGTTCCGATTAGCCGACGACGGTGTCAAAGTGAGCCGACGCCCGGACT
GGGATCGTCCCGGTGGTGATGACATCATCGGGGAGAAGAGGTCAATCCAGCGATAACAGCGAGAC
AGGACCCGATCCAGAGTTTAATTCTAACCCATTCGCCACCGGTGACTTAACAGGTGTGACTACAG
ACTAAACCCTTCCCTGGAATACTTTCCCCTATAATAAAAAGTATC
Right flanking sequence: Indices 13597 -- 14096
ACTAATGATACTACAACGGTCGCTTATTCGCTCGGTCGTAGCCTGCTCGCCTGTTCGCCTACTCG
CCTGCTTGCCTGCTCGCCTCCCTCGGCTGCCTCGCCTCGCCTGTCTGTTGCCTCCTACTCACCCG
GGCCCCTGCGACCATGACCACCGCCAAACCACGCTACTAACCCACGCCACCTGGCGGGATTCCGA
CGAGGCAGCCAGCCACAGCCATTCTCTGGGTCGCCCACTTGGCACCGGTTAGAACCCCTGCCCCC
CGGGGACCCGATGGACCAAGGCCCAAGGCCCAACGGGTGGTGGCCCGAGCCGCCGGGCACGTAAC
CAGCCGAGATAACAATAGCGCTCAACCGGTACACAGCTCGTGAAATTTCTTTTTGCATAGAAAAT
ATTCTGCGGGTTGGTAGCCGCGGGCGCGATGGGGCCTAACCCCGAGCCCGTTAACGGCGAGGTTC
GGAGACGACAAGGGGCGATAAGGGACGGGAGAGGGTGGACATAGG
Found at i:13654 original size:8 final size:8
Alignment explanation
Indices: 13637--13680 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
13627 CTCGGTCGTA
13637 GCCTGCTC
1 GCCTGCTC
*
13645 GCCTGTTC
1 GCCTGCTC
*
13653 GCCTACTC
1 GCCTGCTC
*
13661 GCCTGCTT
1 GCCTGCTC
13669 GCCTGCTC
1 GCCTGCTC
13677 GCCT
1 GCCT
13681 CCCTCGGCTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.02, C:0.45, G:0.23, T:0.30
Consensus pattern (8 bp):
GCCTGCTC
Left flanking sequence: Indices 13137 -- 13636
TTTTGGGCCCTCCCCACCGGTGGTGATCGACCAATCGGGACACAGCACGGGCCCAGATGGCCACA
AAACGCCCGATGAGTAAGCGTGGACAGCCAGAAGGGGGTTTAGTAAAGAAGGAGTAAAGAGAGAA
CGGTGCCAAGCATGGATCTTGGCGTTCCGATTAGCCGACGACGGTGTCAAAGTGAGCCGACGCCC
GGACTGGGATCGTCCCGGTGGTGATGACATCATCGGGGAGAAGAGGTCAATCCAGCGATAACAGC
GAGACAGGACCCGATCCAGAGTTTAATTCTAACCCATTCGCCACCGGTGACTTAACAGGTGTGAC
TACAGACTAAACCCTTCCCTGGAATACTTTCCCCTATAATAAAAAGTATCCTCTACACTAACGAT
ACTCCACACTAACAATACTCTACACTAACTGAGACTCTACACTAACTGAGACTCTACACTAACAA
TACTCACTAATGATACTACAACGGTCGCTTATTCGCTCGGTCGTA
Right flanking sequence: Indices 13681 -- 14180
CCCTCGGCTGCCTCGCCTCGCCTGTCTGTTGCCTCCTACTCACCCGGGCCCCTGCGACCATGACC
ACCGCCAAACCACGCTACTAACCCACGCCACCTGGCGGGATTCCGACGAGGCAGCCAGCCACAGC
CATTCTCTGGGTCGCCCACTTGGCACCGGTTAGAACCCCTGCCCCCCGGGGACCCGATGGACCAA
GGCCCAAGGCCCAACGGGTGGTGGCCCGAGCCGCCGGGCACGTAACCAGCCGAGATAACAATAGC
GCTCAACCGGTACACAGCTCGTGAAATTTCTTTTTGCATAGAAAATATTCTGCGGGTTGGTAGCC
GCGGGCGCGATGGGGCCTAACCCCGAGCCCGTTAACGGCGAGGTTCGGAGACGACAAGGGGCGAT
AAGGGACGGGAGAGGGTGGACATAGGCAGCACTGGGTCGACTAGGGCCGCAGAAAAGCCCAATTG
CGTGGCCGGTGCGCGGGTTGCGTTTTCACCGGGGTTTGGCGATGG
Found at i:14352 original size:16 final size:16
Alignment explanation
Indices: 14331--14362 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14321 GGTAAGGTGT
14331 GGTGATTTAACGTGGA
1 GGTGATTTAACGTGGA
*
14347 GGTGATTTAATGTGGA
1 GGTGATTTAACGTGGA
14363 TTAAAGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.38, T:0.34
Consensus pattern (16 bp):
GGTGATTTAACGTGGA
Left flanking sequence: Indices 13831 -- 14330
TGGCACCGGTTAGAACCCCTGCCCCCCGGGGACCCGATGGACCAAGGCCCAAGGCCCAACGGGTG
GTGGCCCGAGCCGCCGGGCACGTAACCAGCCGAGATAACAATAGCGCTCAACCGGTACACAGCTC
GTGAAATTTCTTTTTGCATAGAAAATATTCTGCGGGTTGGTAGCCGCGGGCGCGATGGGGCCTAA
CCCCGAGCCCGTTAACGGCGAGGTTCGGAGACGACAAGGGGCGATAAGGGACGGGAGAGGGTGGA
CATAGGCAGCACTGGGTCGACTAGGGCCGCAGAAAAGCCCAATTGCGTGGCCGGTGCGCGGGTTG
CGTTTTCACCGGGGTTTGGCGATGGCGTCGTTTCATGTCTGACCGACACCGAAGTCGTGACAGGG
ATGGAAAGTCGTGGGGCGCCCGGTGGGACGCTAGGAGGTGTGGTGGTGGGTTTGTGTGCCCTGGG
ATGGTACGGCTGGGGGTAGGAGAGCTACGGATGGGGGTAAGGTGT
Right flanking sequence: Indices 14363 -- 14862
TTAAAGGGATAGGCAAGGGGTCGGAGTGCATTGCAGATAGGTGGTGGGGAAACAGACAAAAGACC
CTGGGTGGTCACTGTTAATGTCCTGAGCGACGAAGTGGGCTGACCAGTGGTGGGAGAGGTGGGGT
TTTAGCAGAGAGCAAACAATTCTAGAACAAAATGCCAGACCAAAATGCCAGAGTAAAAAATGGTA
CAGTTTTATGTAGTTTAGAGGTTTAAGGGTACTATGAGTAGGTTGTAAACAGGCTATCAGGCCTA
TAAACGGTAGGAGGCACTGGGTGGCTACTACCGGTTACAACCACGCGATTTCTGGACTCCGTTAG
CCATTAAGCTTTCGGTTCGGAGTGATCTTCGCTGGACCTCCGAGTGAGAAGATCACGGAGAAACG
CGGAGTTAGTTGGTCACCGGGCCTGTGACGAAAAATAAATACAGTGGGGGGTTCGCCACAATTTC
TGAGGTGTGCCATAAGTGAAATAGCTTATCAGTTGCTCACAGTCA
Found at i:14550 original size:13 final size:13
Alignment explanation
Indices: 14520--14544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14510 AATTCTAGAA
14520 CAAAATGCCAGAC
1 CAAAATGCCAGAC
14533 CAAAATGCCAGA
1 CAAAATGCCAGA
14545 GTAAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.16, T:0.08
Consensus pattern (13 bp):
CAAAATGCCAGAC
Left flanking sequence: Indices 14020 -- 14519
GCCTAACCCCGAGCCCGTTAACGGCGAGGTTCGGAGACGACAAGGGGCGATAAGGGACGGGAGAG
GGTGGACATAGGCAGCACTGGGTCGACTAGGGCCGCAGAAAAGCCCAATTGCGTGGCCGGTGCGC
GGGTTGCGTTTTCACCGGGGTTTGGCGATGGCGTCGTTTCATGTCTGACCGACACCGAAGTCGTG
ACAGGGATGGAAAGTCGTGGGGCGCCCGGTGGGACGCTAGGAGGTGTGGTGGTGGGTTTGTGTGC
CCTGGGATGGTACGGCTGGGGGTAGGAGAGCTACGGATGGGGGTAAGGTGTGGTGATTTAACGTG
GAGGTGATTTAATGTGGATTAAAGGGATAGGCAAGGGGTCGGAGTGCATTGCAGATAGGTGGTGG
GGAAACAGACAAAAGACCCTGGGTGGTCACTGTTAATGTCCTGAGCGACGAAGTGGGCTGACCAG
TGGTGGGAGAGGTGGGGTTTTAGCAGAGAGCAAACAATTCTAGAA
Right flanking sequence: Indices 14545 -- 15044
GTAAAAAATGGTACAGTTTTATGTAGTTTAGAGGTTTAAGGGTACTATGAGTAGGTTGTAAACAG
GCTATCAGGCCTATAAACGGTAGGAGGCACTGGGTGGCTACTACCGGTTACAACCACGCGATTTC
TGGACTCCGTTAGCCATTAAGCTTTCGGTTCGGAGTGATCTTCGCTGGACCTCCGAGTGAGAAGA
TCACGGAGAAACGCGGAGTTAGTTGGTCACCGGGCCTGTGACGAAAAATAAATACAGTGGGGGGT
TCGCCACAATTTCTGAGGTGTGCCATAAGTGAAATAGCTTATCAGTTGCTCACAGTCATTTAGTA
TTTTGTAGTTTGCGGACTCCTGGAATCCCTCGTAATAAATGAAACCAGCTGCAGAAAGACGAAGG
TGCATGAGCTTACAGGTGCTGATCCTACAGGTGCTGAATTACAGGTGCTGAAAGATAACGGATGG
GGACACAGCAGATACGAGAGAGTGAATTTATTTAGTCGGATTGAT
Found at i:14979 original size:14 final size:14
Alignment explanation
Indices: 14944--14986 Score: 61
Period size: 14 Copynumber: 3.0 Consensus size: 14
14934 GTGCATGAGC
14944 TTACAGGTGCTG-A
1 TTACAGGTGCTGAA
14957 TCCTACAGGTGCTGAA
1 T--TACAGGTGCTGAA
14973 TTACAGGTGCTGAA
1 TTACAGGTGCTGAA
14987 AGATAACGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
15 11 0.41
16 2 0.07
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (14 bp):
TTACAGGTGCTGAA
Left flanking sequence: Indices 14444 -- 14943
AATGTCCTGAGCGACGAAGTGGGCTGACCAGTGGTGGGAGAGGTGGGGTTTTAGCAGAGAGCAAA
CAATTCTAGAACAAAATGCCAGACCAAAATGCCAGAGTAAAAAATGGTACAGTTTTATGTAGTTT
AGAGGTTTAAGGGTACTATGAGTAGGTTGTAAACAGGCTATCAGGCCTATAAACGGTAGGAGGCA
CTGGGTGGCTACTACCGGTTACAACCACGCGATTTCTGGACTCCGTTAGCCATTAAGCTTTCGGT
TCGGAGTGATCTTCGCTGGACCTCCGAGTGAGAAGATCACGGAGAAACGCGGAGTTAGTTGGTCA
CCGGGCCTGTGACGAAAAATAAATACAGTGGGGGGTTCGCCACAATTTCTGAGGTGTGCCATAAG
TGAAATAGCTTATCAGTTGCTCACAGTCATTTAGTATTTTGTAGTTTGCGGACTCCTGGAATCCC
TCGTAATAAATGAAACCAGCTGCAGAAAGACGAAGGTGCATGAGC
Right flanking sequence: Indices 14987 -- 15486
AGATAACGGATGGGGACACAGCAGATACGAGAGAGTGAATTTATTTAGTCGGATTGATGGACTCC
GTGGGTTGTCCATTCTTTAGCCATTGTCTAATAGGGGCCAAATATTATTTCAAAATAGGCAGACA
AATGACGAGTGACAGCCAGCGTTGGTCCTGTTGCAACCGATTTCAGGGTCAGAAGCCAAGGGGCT
AAAGGTAACGTTGGTGGTTTTTGTCGTTCTTAGCACTTGTGGATTTATTACTCAGATCGAAGGGT
ACGAAATACGGTAATGGAGGTAGACGAGAGTCCCTATAATCGGGAGACTATACTTTAAATAGTGT
AACAGTATCCAGATATGTAATTTGTGTAGCCTATTAGGGTTTACATTCCGGTAACTACTTCATAG
TTAGATGGTTACCATATCTGCTTAGATGCGTAACCAGGTATATGAAACCAATAGGCCCAATTGGC
TATACTTACACCTCCACTAGGGCCACAAAATTTCGTCAATCTCAT
Found at i:15680 original size:16 final size:17
Alignment explanation
Indices: 15658--15697 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
15648 AATATTTACC
15658 CCTTTCTCTT-TCTCTT
1 CCTTTCTCTTCTCTCTT
*
15674 TCTTTCT-TTCTCTCTT
1 CCTTTCTCTTCTCTCTT
15690 CCTTTCTC
1 CCTTTCTC
15698 CCTTCTACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (17 bp):
CCTTTCTCTTCTCTCTT
Left flanking sequence: Indices 15158 -- 15657
TTCAGGGTCAGAAGCCAAGGGGCTAAAGGTAACGTTGGTGGTTTTTGTCGTTCTTAGCACTTGTG
GATTTATTACTCAGATCGAAGGGTACGAAATACGGTAATGGAGGTAGACGAGAGTCCCTATAATC
GGGAGACTATACTTTAAATAGTGTAACAGTATCCAGATATGTAATTTGTGTAGCCTATTAGGGTT
TACATTCCGGTAACTACTTCATAGTTAGATGGTTACCATATCTGCTTAGATGCGTAACCAGGTAT
ATGAAACCAATAGGCCCAATTGGCTATACTTACACCTCCACTAGGGCCACAAAATTTCGTCAATC
TCATACAATCTCATACAATTTCCCACTATTTCTCTAGTTTATCAAGATTGAAATCACTCTTTAGA
CAATCTGTAGAACCTATGATTTTTCCATCATTTCCACCCGAGAAAAAGCGTTGGGGGGTCTGGGG
GGCGCCGCTCGCGGCCCCCCAGCTCACTGTACCCCAATATTTACC
Right flanking sequence: Indices 15698 -- 16197
CCTTCTACCCTACACCCTCCTTATACTCTTCATTCTCATTAATATATTACCATACACCCCGCTAC
ATCCACAACTCCGTCACCTCGGTCTCGGCCAACGCCTCGAGCGCGTACTTGATATCCTTCCCGGT
CTTGTCCACCGGCTGCCACCGCTTCAACGCCGCCTGGAGATGCACCGCCACCTCCATAGCATTAA
CGTGGGGGACCCGGGTGATGTCGTCCAAAAGGCCCCGCACGTTCCACGCAAGCGCATACAAGTTG
AGCAGCCCACCAAAGAACGACGGCTCGACCACCTTGGACCCGCCCGCCCGCATCACCACCATCGG
GTGGTGGCTGGCGTTGGTCACCAGCGTCGTCGCCGTGAGGTGCTCGAGGCCTGCATGTAGCCCGT
CGGCCGGGATCTGGCATAACGCCGAGTGGAGCCAGTGTGCAGGCTCAACATCGGCCAAGTCGGCG
ACTACTCCGTGGTCGGGGAAACTGCCGCGGTTCTTGAGCAAGGCG
Found at i:17097 original size:12 final size:12
Alignment explanation
Indices: 17075--17184 Score: 103
Period size: 12 Copynumber: 9.9 Consensus size: 12
17065 CCTCTGGGGA
17075 GGTCGCCCTTGG
1 GGTCGCCCTTGG
* *
17087 TGTCGCTCTTGG
1 GGTCGCCCTTGG
17099 GGTCGCCCTT-G
1 GGTCGCCCTTGG
17110 GG--GCCCTTGG
1 GGTCGCCCTTGG
*
17120 AGTCGCCCTT-G
1 GGTCGCCCTTGG
17131 GG--GCCCTTGG
1 GGTCGCCCTTGG
17141 GGTCGCCCTT-G
1 GGTCGCCCTTGG
17152 GG--GCCCTTGG
1 GGTCGCCCTTGG
* * *
17162 AGTCGCTCTTAG
1 GGTCGCCCTTGG
17174 GGTCGCCCTTG
1 GGTCGCCCTTG
17185 CTTAAGTCGA
Statistics
Matches: 77, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
9 18 0.23
10 7 0.09
11 8 0.10
12 44 0.57
ACGTcount: A:0.03, C:0.32, G:0.38, T:0.27
Consensus pattern (12 bp):
GGTCGCCCTTGG
Left flanking sequence: Indices 16575 -- 17074
CACGGCCCCGGAGGCCGCCACCACCACCACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGG
AGAGGAGGGTCATGTGGTCGGCCACACGGTCCGCAATGGCCCCGTGGCCCTCGAGAGCAATAGCC
ACCACCTCGGTGTCGGGGCCAAGGGCAGCGATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGT
GGAGCCCCCAACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCA
CGCGCTCGGGGCAGGCGCGCTCGGAGGAGTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGG
GCGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGA
GGGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCAT
TAGTGGGGGTGTCGCTGGCGTCTGCGCGCGGGGACCCTCTGGGGA
Right flanking sequence: Indices 17185 -- 17684
CTTAAGTCGATTTGGGACCCGCGCTTACCACGGTCGTCGCTCCCTCCGCTCCCCCTCCTCTTCCC
TCCGTCACTCCTCCGGTCACTCACCTTCACTCCTCCGCCACTCCTCCCCTTGACGCTCTGCACAC
TCGCCAGCGGGGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGTCTCATGGGGCGGGCGCGGG
GTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTGCCCATCACCGCGAGCTC
GTGGTGGCACACCTCGCCCTCGACAAGCACCCGGGTCACGGCGTACCCGAGGGCGCCCTGGGCAG
TCTCCACCGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGAGGCGCACTACCTCGTCG
TCGTCATCGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGCCACCACCAGGAGGAGGTGTTGGC
GGGGGCCGCGGGGTTGGCCGGGGGCAGCTCCGCCTCGGGGAGGAG
Found at i:17117 original size:9 final size:9
Alignment explanation
Indices: 17103--17161 Score: 64
Period size: 9 Copynumber: 5.9 Consensus size: 9
17093 TCTTGGGGTC
17103 GCCCTTGGG
1 GCCCTTGGG
17112 GCCCTTGGAG
1 GCCCTTGG-G
17122 TCGCCCTTGGG
1 --GCCCTTGGG
17133 GCCCTTGGGG
1 GCCCTT-GGG
17143 TCGCCCTTGGG
1 --GCCCTTGGG
17154 GCCCTTGG
1 GCCCTTGG
17162 AGTCGCTCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
9 22 0.50
10 4 0.09
11 4 0.09
12 14 0.32
ACGTcount: A:0.02, C:0.34, G:0.41, T:0.24
Consensus pattern (9 bp):
GCCCTTGGG
Left flanking sequence: Indices 16603 -- 17102
ACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGGAGAGGAGGGTCATGTGGTCGGCCACACG
GTCCGCAATGGCCCCGTGGCCCTCGAGAGCAATAGCCACCACCTCGGTGTCGGGGCCAAGGGCAG
CGATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGTGGAGCCCCCAACGTGGCTCTTGGTGTAG
CGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCACGCGCTCGGGGCAGGCGCGCTCGGAGGA
GTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGGGCGTCCTGGAGCCAGAGGCGCCAGCGGG
TGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGAGGGGCCCACGCGGAGCGGGAGGGGCACC
TGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCATTAGTGGGGGTGTCGCTGGCGTCTGCGCG
CGGGGACCCTCTGGGGAGGTCGCCCTTGGTGTCGCTCTTGGGGTC
Right flanking sequence: Indices 17162 -- 17661
AGTCGCTCTTAGGGTCGCCCTTGCTTAAGTCGATTTGGGACCCGCGCTTACCACGGTCGTCGCTC
CCTCCGCTCCCCCTCCTCTTCCCTCCGTCACTCCTCCGGTCACTCACCTTCACTCCTCCGCCACT
CCTCCCCTTGACGCTCTGCACACTCGCCAGCGGGGTCATGGGCACCAGCACCGCCGGCGGTGCCG
CCGTCTCATGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTG
GCCGTGCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGCACCCGGGTCACGGC
GTACCCGAGGGCGCCCTGGGCAGTCTCCACCGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTC
CGTGGAGGCGCACTACCTCGTCGTCGTCATCGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGC
CACCACCAGGAGGAGGTGTTGGCGGGGGCCGCGGGGTTGGCCGGG
Found at i:17124 original size:21 final size:21
Alignment explanation
Indices: 17076--17167 Score: 130
Period size: 21 Copynumber: 4.2 Consensus size: 21
17066 CTCTGGGGAG
* *
17076 GTCGCCCTTGGTGTCGCTCTTGGG
1 GTCGCCCTTGG-G--GCCCTTGGA
17100 GTCGCCCTTGGGGCCCTTGGA
1 GTCGCCCTTGGGGCCCTTGGA
*
17121 GTCGCCCTTGGGGCCCTTGGG
1 GTCGCCCTTGGGGCCCTTGGA
17142 GTCGCCCTTGGGGCCCTTGGA
1 GTCGCCCTTGGGGCCCTTGGA
17163 GTCGC
1 GTCGC
17168 TCTTAGGGTC
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
21 52 0.81
23 1 0.02
24 11 0.17
ACGTcount: A:0.02, C:0.33, G:0.39, T:0.26
Consensus pattern (21 bp):
GTCGCCCTTGGGGCCCTTGGA
Left flanking sequence: Indices 16576 -- 17075
ACGGCCCCGGAGGCCGCCACCACCACCACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGGA
GAGGAGGGTCATGTGGTCGGCCACACGGTCCGCAATGGCCCCGTGGCCCTCGAGAGCAATAGCCA
CCACCTCGGTGTCGGGGCCAAGGGCAGCGATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGTG
GAGCCCCCAACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCAC
GCGCTCGGGGCAGGCGCGCTCGGAGGAGTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGGG
CGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGAG
GGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCATT
AGTGGGGGTGTCGCTGGCGTCTGCGCGCGGGGACCCTCTGGGGAG
Right flanking sequence: Indices 17168 -- 17667
TCTTAGGGTCGCCCTTGCTTAAGTCGATTTGGGACCCGCGCTTACCACGGTCGTCGCTCCCTCCG
CTCCCCCTCCTCTTCCCTCCGTCACTCCTCCGGTCACTCACCTTCACTCCTCCGCCACTCCTCCC
CTTGACGCTCTGCACACTCGCCAGCGGGGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGTCT
CATGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTG
CCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGCACCCGGGTCACGGCGTACCC
GAGGGCGCCCTGGGCAGTCTCCACCGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGA
GGCGCACTACCTCGTCGTCGTCATCGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGCCACCAC
CAGGAGGAGGTGTTGGCGGGGGCCGCGGGGTTGGCCGGGGGCAGC
Found at i:17146 original size:42 final size:44
Alignment explanation
Indices: 17076--17184 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 44
17066 CTCTGGGGAG
*
17076 GTCGCCCTTGGTGTCGCTCTTGGGGTCGCCCTTGGGGCCCTTGGA
1 GTCGCCCTTGGTG-CGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
17121 GTCGCCCTTGG-G-GCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
1 GTCGCCCTTGGTGCGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
*
17163 GTCGCTCTTAGG-GTCGCCCTTG
1 GTCGCCCTT-GGTG-CGCCCTTG
17185 CTTAAGTCGA
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
42 37 0.63
43 3 0.05
44 1 0.02
45 18 0.31
ACGTcount: A:0.03, C:0.32, G:0.38, T:0.28
Consensus pattern (44 bp):
GTCGCCCTTGGTGCGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
Left flanking sequence: Indices 16576 -- 17075
ACGGCCCCGGAGGCCGCCACCACCACCACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGGA
GAGGAGGGTCATGTGGTCGGCCACACGGTCCGCAATGGCCCCGTGGCCCTCGAGAGCAATAGCCA
CCACCTCGGTGTCGGGGCCAAGGGCAGCGATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGTG
GAGCCCCCAACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCAC
GCGCTCGGGGCAGGCGCGCTCGGAGGAGTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGGG
CGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGAG
GGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCATT
AGTGGGGGTGTCGCTGGCGTCTGCGCGCGGGGACCCTCTGGGGAG
Right flanking sequence: Indices 17185 -- 17684
CTTAAGTCGATTTGGGACCCGCGCTTACCACGGTCGTCGCTCCCTCCGCTCCCCCTCCTCTTCCC
TCCGTCACTCCTCCGGTCACTCACCTTCACTCCTCCGCCACTCCTCCCCTTGACGCTCTGCACAC
TCGCCAGCGGGGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGTCTCATGGGGCGGGCGCGGG
GTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTGCCCATCACCGCGAGCTC
GTGGTGGCACACCTCGCCCTCGACAAGCACCCGGGTCACGGCGTACCCGAGGGCGCCCTGGGCAG
TCTCCACCGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGAGGCGCACTACCTCGTCG
TCGTCATCGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGCCACCACCAGGAGGAGGTGTTGGC
GGGGGCCGCGGGGTTGGCCGGGGGCAGCTCCGCCTCGGGGAGGAG
Found at i:17264 original size:11 final size:11
Alignment explanation
Indices: 17248--17296 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
17238 CCTCCTCTTC
17248 CCTCCGTCACT
1 CCTCCGTCACT
17259 CCTCCGGTCACT
1 CCTCC-GTCACT
* *
17271 -CACCTTCACT
1 CCTCCGTCACT
*
17281 CCTCCGCCACT
1 CCTCCGTCACT
17292 CCTCC
1 CCTCC
17297 CCTTGACGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 5 0.16
11 20 0.65
12 6 0.19
ACGTcount: A:0.10, C:0.57, G:0.08, T:0.24
Consensus pattern (11 bp):
CCTCCGTCACT
Left flanking sequence: Indices 16748 -- 17247
CCATCGCGAGCGCCAGCCCCGTGGAGCCCCCAACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGC
TGGTGCACCGCCACCACCACCACGCGCTCGGGGCAGGCGCGCTCGGAGGAGTAGATGTGGTTCTC
GGGGGTGCGGCGGCGGTAGAGGGCGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCT
GGCGGAACGACGCCGCGACCGAGGGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACC
GAGTACGGGGGGGTGGGGTCATTAGTGGGGGTGTCGCTGGCGTCTGCGCGCGGGGACCCTCTGGG
GAGGTCGCCCTTGGTGTCGCTCTTGGGGTCGCCCTTGGGGCCCTTGGAGTCGCCCTTGGGGCCCT
TGGGGTCGCCCTTGGGGCCCTTGGAGTCGCTCTTAGGGTCGCCCTTGCTTAAGTCGATTTGGGAC
CCGCGCTTACCACGGTCGTCGCTCCCTCCGCTCCCCCTCCTCTTC
Right flanking sequence: Indices 17297 -- 17796
CCTTGACGCTCTGCACACTCGCCAGCGGGGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGTC
TCATGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGT
GCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGCACCCGGGTCACGGCGTACC
CGAGGGCGCCCTGGGCAGTCTCCACCGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGG
AGGCGCACTACCTCGTCGTCGTCATCGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGCCACCA
CCAGGAGGAGGTGTTGGCGGGGGCCGCGGGGTTGGCCGGGGGCAGCTCCGCCTCGGGGAGGAGAG
GAGTGTGCTCGGAGGGAGGTTGCCTCAGCACCATGCCGTAGACGTAGGAGACGGCGCCCAGCGGG
TTCACCCACGATAGCCGGCCCGGCGGCGGGGCCGAGTCGGAGCCA
Found at i:17883 original size:18 final size:16
Alignment explanation
Indices: 17860--17906 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 16
17850 AGTGGTTGTA
17860 GTAGGGGCCTGAGGTT
1 GTAGGGGCCTGAGGTT
*
17876 GGGTAGGGGCCGGAGGTT
1 --GTAGGGGCCTGAGGTT
17894 G-AGGGGCCTGAGG
1 GTAGGGGCCTGAGG
17907 AGGTTGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 11 0.41
16 1 0.04
18 15 0.56
ACGTcount: A:0.13, C:0.13, G:0.57, T:0.17
Consensus pattern (16 bp):
GTAGGGGCCTGAGGTT
Left flanking sequence: Indices 17360 -- 17859
TCTCATGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCC
GTGCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGCACCCGGGTCACGGCGTA
CCCGAGGGCGCCCTGGGCAGTCTCCACCGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGT
GGAGGCGCACTACCTCGTCGTCGTCATCGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGCCAC
CACCAGGAGGAGGTGTTGGCGGGGGCCGCGGGGTTGGCCGGGGGCAGCTCCGCCTCGGGGAGGAG
AGGAGTGTGCTCGGAGGGAGGTTGCCTCAGCACCATGCCGTAGACGTAGGAGACGGCGCCCAGCG
GGTTCACCCACGATAGCCGGCCCGGCGGCGGGGCCGAGTCGGAGCCAAGGTGGGCACACTCGTCT
TTGTCTCTGGGGCTCTCCGTGGTGGTGAGGGTCTGAGTGGTTGTA
Right flanking sequence: Indices 17907 -- 18406
AGGTTGAGAAGAGGCCTGAGGAGGTGCCTTCTTTTGGGGCGACGAGGGGCGCTGAGGTGCGGCCC
CAGGCGTGGGTGCACCACCGGTGCTAGCACCACTGGTGGCGTCGTTGGCAGCACCTCCGTTCGTG
GTGGCACTCTTAGCACCCTTAGCACCATCCTTTACAGCACCTCGTTTGTCTTTGGCACTTTCACC
ATTAGCATTAAAGCCACCTGTTTTGGTCTCAGGCTTGCTTTCACGGGTGTCGCTAATCCGAAACG
ACTCCTCGATCGCCTCGAGCGGCGTCGCCCGGCCGTCCTCCTTGGGTGGGTCTGGCTGGCTCGAC
CACAAGCGCCACCGCAGGCGCGGGGGCTCGGGCGGGGCCTCGGGTGCGGGTGCACCGGGAGGAGG
TGCCTCGCGCACAGGAGCCCCCAGGTTCTGCACACCTGGTGTCAGCACGCCCATCACACTGTAGC
TGGTCGTGGTGTTTGTGGAGGGAAGGGACTGCTATAGATAGCTCC
Found at i:17908 original size:18 final size:20
Alignment explanation
Indices: 17887--17931 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
17877 GGTAGGGGCC
17887 GGAGGTTGAG-G-GGCCTGA
1 GGAGGTTGAGAGAGGCCTGA
17905 GGAGGTTGAGAAGAGGCCTGA
1 GGAGGTTGAG-AGAGGCCTGA
17926 GGAGGT
1 GGAGGT
17932 GCCTTCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.42
20 1 0.04
21 13 0.54
ACGTcount: A:0.22, C:0.09, G:0.53, T:0.16
Consensus pattern (20 bp):
GGAGGTTGAGAGAGGCCTGA
Left flanking sequence: Indices 17387 -- 17886
TCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTGCCCATCACCGCGAGCTCGTGGTGG
CACACCTCGCCCTCGACAAGCACCCGGGTCACGGCGTACCCGAGGGCGCCCTGGGCAGTCTCCAC
CGCCTTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGAGGCGCACTACCTCGTCGTCGTCAT
CGTCCTCCTCCGGGGCCGCGGCGGAGGTGAAGGGCCACCACCAGGAGGAGGTGTTGGCGGGGGCC
GCGGGGTTGGCCGGGGGCAGCTCCGCCTCGGGGAGGAGAGGAGTGTGCTCGGAGGGAGGTTGCCT
CAGCACCATGCCGTAGACGTAGGAGACGGCGCCCAGCGGGTTCACCCACGATAGCCGGCCCGGCG
GCGGGGCCGAGTCGGAGCCAAGGTGGGCACACTCGTCTTTGTCTCTGGGGCTCTCCGTGGTGGTG
AGGGTCTGAGTGGTTGTAGTAGGGGCCTGAGGTTGGGTAGGGGCC
Right flanking sequence: Indices 17932 -- 18431
GCCTTCTTTTGGGGCGACGAGGGGCGCTGAGGTGCGGCCCCAGGCGTGGGTGCACCACCGGTGCT
AGCACCACTGGTGGCGTCGTTGGCAGCACCTCCGTTCGTGGTGGCACTCTTAGCACCCTTAGCAC
CATCCTTTACAGCACCTCGTTTGTCTTTGGCACTTTCACCATTAGCATTAAAGCCACCTGTTTTG
GTCTCAGGCTTGCTTTCACGGGTGTCGCTAATCCGAAACGACTCCTCGATCGCCTCGAGCGGCGT
CGCCCGGCCGTCCTCCTTGGGTGGGTCTGGCTGGCTCGACCACAAGCGCCACCGCAGGCGCGGGG
GCTCGGGCGGGGCCTCGGGTGCGGGTGCACCGGGAGGAGGTGCCTCGCGCACAGGAGCCCCCAGG
TTCTGCACACCTGGTGTCAGCACGCCCATCACACTGTAGCTGGTCGTGGTGTTTGTGGAGGGAAG
GGACTGCTATAGATAGCTCCTGCGACAGCCTGCATGTGCTTTGAG
Found at i:19123 original size:21 final size:21
Alignment explanation
Indices: 19099--19158 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
19089 TCCAGGAGAG
*
19099 GCACGAGGCGTTGGTGGCGGA
1 GCACGAGGCGTTGGTGGCGCA
* ** *
19120 GCACCAGGCGCTCCG-GGAGCA
1 GCACGAGGCG-TTGGTGGCGCA
19141 GCACGAGGCGTTGGTGGC
1 GCACGAGGCGTTGGTGGC
19159 CCGGTGGATG
Statistics
Matches: 28, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
20 2 0.07
21 24 0.86
22 2 0.07
ACGTcount: A:0.15, C:0.27, G:0.47, T:0.12
Consensus pattern (21 bp):
GCACGAGGCGTTGGTGGCGCA
Left flanking sequence: Indices 18599 -- 19098
GTGGTATCTCGGTTAGCGGCCCTGGTGGCATTTGCAGCCCGCATGTGCTTACACCGAGCGAGCAC
CAGACACACCATGGAGGCACCCAGCACCCTCCCTGACCAGACGCCCAGCGACCGCGTCCACAGCC
CGCCCGCGTGGGCGGCGGACGTCATGACGCTTCTCCGGGAACGGGACGCCGCCGTAGCCCCCAAT
TCCCCCTACTACGAGGCGTTCTCGGCCCTCCTTGCGCGGACGGCCACCACTCGCACCAGTGACCA
GGCCACCGGTGCGGCTGAGCTCAAACAGCGGCTCGAAAACGCAGCGTTTGAGCGGGAAAAACTCG
TAGGCGAGCTCCGCGACGCCCGCGAACAAATAGACACCCTCGCTAGCGAGAAGGCCCGGCTCCAG
CACCGCCGGGACCACCTCCAGGCCGAGATCAGGGACAAAAACCGGCAGATCGAGGTGGTGAACGA
CGAGCAGTTGGTGGCCCAGATGCAGGCCAACGTGCTCCAGGAGAG
Right flanking sequence: Indices 19159 -- 19658
CCGGTGGATGGCCCGGGCCGAGTCGGAGGCCGCGAGGATGAACGAAGCGGTGGAGCGAACGAACG
GAAGCCAGGGGTAAGAAAATGGGCCAGGGGTAGGTGATGAGAATGTGCCAGGGGTAGGTGAAGAG
AATGTGCCAGGGTCAGGTTGAAGAAAATGGTGTATTATTTGTCTAAACTGGTTCTGAGCTGGAAC
AGTGAGACGGAAACATCAGCTGAAGAGGTTGGTGGTAATTGACGGGACTTGTTTGTGAAGCCAAT
AGCTTGTATTCAAGAATCAAATTGTCTCTTGAAGTTACTAGGCTCTGATGGTAGAGCATTATGGG
TATCTTCATAGGAATCTTCACAAGACCAATCTTCAAAAGGCCAATCTTCACAGGAAATTTTCAAA
AGGCCTATCTTCACAGGAATCTCCACAGATATCTCCACAGGAAATCTTCAGGCCAATTGACCGAG
TTACCGGCTGATCACCGGTCCCAACACTTTCTTTTCCGGTTTCAT
Found at i:19313 original size:23 final size:24
Alignment explanation
Indices: 19236--19317 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
19226 AGCCAGGGGT
* *
19236 AAGAAAATGGGCCAGGGGTAGGTG
1 AAGAGAATGTGCCAGGGGTAGGTG
*
19260 ATGAGAATGTGCCAGGGGTAGGTG
1 AAGAGAATGTGCCAGGGGTAGGTG
19284 AAGAGAATGTGCCA-GGGTCAGGTTG
1 AAGAGAATGTGCCAGGGGT-AGG-TG
*
19309 AAGAAAATG
1 AAGAGAATG
19318 GTGTATTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
23 4 0.08
24 37 0.73
25 10 0.20
ACGTcount: A:0.33, C:0.09, G:0.41, T:0.17
Consensus pattern (24 bp):
AAGAGAATGTGCCAGGGGTAGGTG
Left flanking sequence: Indices 18736 -- 19235
GTGGGCGGCGGACGTCATGACGCTTCTCCGGGAACGGGACGCCGCCGTAGCCCCCAATTCCCCCT
ACTACGAGGCGTTCTCGGCCCTCCTTGCGCGGACGGCCACCACTCGCACCAGTGACCAGGCCACC
GGTGCGGCTGAGCTCAAACAGCGGCTCGAAAACGCAGCGTTTGAGCGGGAAAAACTCGTAGGCGA
GCTCCGCGACGCCCGCGAACAAATAGACACCCTCGCTAGCGAGAAGGCCCGGCTCCAGCACCGCC
GGGACCACCTCCAGGCCGAGATCAGGGACAAAAACCGGCAGATCGAGGTGGTGAACGACGAGCAG
TTGGTGGCCCAGATGCAGGCCAACGTGCTCCAGGAGAGGCACGAGGCGTTGGTGGCGGAGCACCA
GGCGCTCCGGGAGCAGCACGAGGCGTTGGTGGCCCGGTGGATGGCCCGGGCCGAGTCGGAGGCCG
CGAGGATGAACGAAGCGGTGGAGCGAACGAACGGAAGCCAGGGGT
Right flanking sequence: Indices 19318 -- 19817
GTGTATTATTTGTCTAAACTGGTTCTGAGCTGGAACAGTGAGACGGAAACATCAGCTGAAGAGGT
TGGTGGTAATTGACGGGACTTGTTTGTGAAGCCAATAGCTTGTATTCAAGAATCAAATTGTCTCT
TGAAGTTACTAGGCTCTGATGGTAGAGCATTATGGGTATCTTCATAGGAATCTTCACAAGACCAA
TCTTCAAAAGGCCAATCTTCACAGGAAATTTTCAAAAGGCCTATCTTCACAGGAATCTCCACAGA
TATCTCCACAGGAAATCTTCAGGCCAATTGACCGAGTTACCGGCTGATCACCGGTCCCAACACTT
TCTTTTCCGGTTTCATTCCGTTTTCTTTTTATTTTCTTTTTGTTTCTTCCGTTATTGGGTTGATG
GTCACCCGGTAGGCGGGACGGACGCCGGCTTGACGCCCGGATCACCGCTGTAGGCCAGGGTGCCC
GTATCTGCCGTGGGAACCGCCGTATATGTTGGTAAAGCACCGCGG
Found at i:19516 original size:15 final size:15
Alignment explanation
Indices: 19496--19535 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
19486 TCTTCATAGG
19496 AATCTTCACAAGACC
1 AATCTTCACAAGACC
* *
19511 AATCTTCAAAAGGCC
1 AATCTTCACAAGACC
19526 AATCTTCACA
1 AATCTTCACA
19536 GGAAATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.40, C:0.30, G:0.07, T:0.23
Consensus pattern (15 bp):
AATCTTCACAAGACC
Left flanking sequence: Indices 18996 -- 19495
GGGACCACCTCCAGGCCGAGATCAGGGACAAAAACCGGCAGATCGAGGTGGTGAACGACGAGCAG
TTGGTGGCCCAGATGCAGGCCAACGTGCTCCAGGAGAGGCACGAGGCGTTGGTGGCGGAGCACCA
GGCGCTCCGGGAGCAGCACGAGGCGTTGGTGGCCCGGTGGATGGCCCGGGCCGAGTCGGAGGCCG
CGAGGATGAACGAAGCGGTGGAGCGAACGAACGGAAGCCAGGGGTAAGAAAATGGGCCAGGGGTA
GGTGATGAGAATGTGCCAGGGGTAGGTGAAGAGAATGTGCCAGGGTCAGGTTGAAGAAAATGGTG
TATTATTTGTCTAAACTGGTTCTGAGCTGGAACAGTGAGACGGAAACATCAGCTGAAGAGGTTGG
TGGTAATTGACGGGACTTGTTTGTGAAGCCAATAGCTTGTATTCAAGAATCAAATTGTCTCTTGA
AGTTACTAGGCTCTGATGGTAGAGCATTATGGGTATCTTCATAGG
Right flanking sequence: Indices 19536 -- 20035
GGAAATTTTCAAAAGGCCTATCTTCACAGGAATCTCCACAGATATCTCCACAGGAAATCTTCAGG
CCAATTGACCGAGTTACCGGCTGATCACCGGTCCCAACACTTTCTTTTCCGGTTTCATTCCGTTT
TCTTTTTATTTTCTTTTTGTTTCTTCCGTTATTGGGTTGATGGTCACCCGGTAGGCGGGACGGAC
GCCGGCTTGACGCCCGGATCACCGCTGTAGGCCAGGGTGCCCGTATCTGCCGTGGGAACCGCCGT
ATATGTTGGTAAAGCACCGCGGTGGGGACAATGGTGATCGGCGATAATTTGGCGACCATGGGGTG
AGGTTGGCATGGCTTGTTGGGCGTGGATCGGTACGCGAGCCGTGGCGGGAGGCCCAGGCGACCGG
TGGGCCTCGCTAGCTGCCACGACCGCCTAGAGAGGCCGTGACTGGCTCGGAATTCTTGGGCTGAG
CGGGTCTGGGATCGGAGGGCGTGTCTGATGACTGCATGACCCCTA
Found at i:19552 original size:28 final size:28
Alignment explanation
Indices: 19496--19567 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
19486 TCTTCATAGG
*
19496 AATCTTCACAAGACCAATCTTCAAAAGGCC
1 AATCTTCACAGGA--AATCTTCAAAAGGCC
*
19526 AATCTTCACAGGAAATTTTCAAAAGGCC
1 AATCTTCACAGGAAATCTTCAAAAGGCC
*
19554 TATCTTCACAGGAA
1 AATCTTCACAGGAA
19568 TCTCCACAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 27 0.69
30 12 0.31
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (28 bp):
AATCTTCACAGGAAATCTTCAAAAGGCC
Left flanking sequence: Indices 18996 -- 19495
GGGACCACCTCCAGGCCGAGATCAGGGACAAAAACCGGCAGATCGAGGTGGTGAACGACGAGCAG
TTGGTGGCCCAGATGCAGGCCAACGTGCTCCAGGAGAGGCACGAGGCGTTGGTGGCGGAGCACCA
GGCGCTCCGGGAGCAGCACGAGGCGTTGGTGGCCCGGTGGATGGCCCGGGCCGAGTCGGAGGCCG
CGAGGATGAACGAAGCGGTGGAGCGAACGAACGGAAGCCAGGGGTAAGAAAATGGGCCAGGGGTA
GGTGATGAGAATGTGCCAGGGGTAGGTGAAGAGAATGTGCCAGGGTCAGGTTGAAGAAAATGGTG
TATTATTTGTCTAAACTGGTTCTGAGCTGGAACAGTGAGACGGAAACATCAGCTGAAGAGGTTGG
TGGTAATTGACGGGACTTGTTTGTGAAGCCAATAGCTTGTATTCAAGAATCAAATTGTCTCTTGA
AGTTACTAGGCTCTGATGGTAGAGCATTATGGGTATCTTCATAGG
Right flanking sequence: Indices 19568 -- 20067
TCTCCACAGATATCTCCACAGGAAATCTTCAGGCCAATTGACCGAGTTACCGGCTGATCACCGGT
CCCAACACTTTCTTTTCCGGTTTCATTCCGTTTTCTTTTTATTTTCTTTTTGTTTCTTCCGTTAT
TGGGTTGATGGTCACCCGGTAGGCGGGACGGACGCCGGCTTGACGCCCGGATCACCGCTGTAGGC
CAGGGTGCCCGTATCTGCCGTGGGAACCGCCGTATATGTTGGTAAAGCACCGCGGTGGGGACAAT
GGTGATCGGCGATAATTTGGCGACCATGGGGTGAGGTTGGCATGGCTTGTTGGGCGTGGATCGGT
ACGCGAGCCGTGGCGGGAGGCCCAGGCGACCGGTGGGCCTCGCTAGCTGCCACGACCGCCTAGAG
AGGCCGTGACTGGCTCGGAATTCTTGGGCTGAGCGGGTCTGGGATCGGAGGGCGTGTCTGATGAC
TGCATGACCCCTACATGGTGAATCGACTACCACCGCTTGACGGTC
Found at i:20966 original size:16 final size:15
Alignment explanation
Indices: 20945--20975 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
20935 GCACACCCAG
20945 TCGCGTCCTTACGCTT
1 TCGCGTCCTT-CGCTT
20961 TCGCGTCCTTCGCTT
1 TCGCGTCCTTCGCTT
20976 GGTTCCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.39, G:0.19, T:0.39
Consensus pattern (15 bp):
TCGCGTCCTTCGCTT
Left flanking sequence: Indices 20445 -- 20944
CCACAGAAGATGTGGTTATATGCACTACCAGACCTTGCCAGTGCCAACAGCTGTGGAGAAAACCC
GGGAAATCAACCTAAAACTCCGTATTCTGAGGGGCGGCGCACTGTAACGTGGACACAAATGCATT
GGCGAGTGTTTTGGGTGTGGCTTTAGCGTGGCGCTAAAGCTCTGGAGCCTCTAGATCTGGTGAAA
CCAGGAAGCCAAAGAAGCCAGGCGAAAGGCAAACGGTGGGGACGAGAACGGCAAACGTTGGGGAT
TGTAACAACACATTGACTGTGTGGACGCATTTGCGTGCCCTAGATGGTCCCATTGTCGTTGTAGT
GGTGTTACAACGAAGTTAGTAGTGGTGTAGCTTTGTGGTTGGTGCGGTGAACATTTCACGCAGCA
CACGGTAGCAGAGTAGGGCTTCACGATTAGTGGAGTTTACTGGATGAACAGATAGCTGTCTTAAT
GAACTAAACAGTAGTCTGTAGCTGATTCGTTGCCAGCACACCCAG
Right flanking sequence: Indices 20976 -- 21475
GGTTCCTTTTCTCTATTTGGAAATTTGCAACCAGTTTGCAACCATGGCAAAACGCCCTCTGAAAC
AAAAAAACGTCCACTAAACCACTTCGTTCCTTACGGTGGACCATTTAACGCAGTTCACGGTAGCA
AAGATCTGGCTTCTCGACCATTGGTTGATACTCGACAAACTGGTAGCTGCCTCAAATAAACTAAT
CAGAAATCCAAGGAATCGCTACTTGCGCACACATAGTCGCCTCCACCCACTTGGATTTCTATTTC
TTCCTTGATTTCTCCATTAACTTTGCATCATTTGCAACCATAATCCTAAACACCAACTACCAAAA
TCCTCGTTCCTTACCCTGTTCTATTTACCTTATCTACTTACTATCTTTACCATCTTTCCGACAGT
ACACCACGAGGTCGCCCTGCCGGCGGCCGTCCCAGTGAAAGTACGAGTTCCACACCCGGTCACAC
TCGCGGTACGGCGAGTTCTCAAAGTACCCCGCCACCTCGGGCACC
Found at i:22478 original size:12 final size:12
Alignment explanation
Indices: 22463--22509 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
22453 ACCCTTTTGG
22463 GACCCGTTTTTC
1 GACCCGTTTTTC
22475 GACCCGTTTTTC
1 GACCCGTTTTTC
* * *
22487 TCACCC-CTTTTG
1 -GACCCGTTTTTC
22499 GACCCGTTTTT
1 GACCCGTTTTT
22510 TTCCCCCTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
11 4 0.14
12 20 0.71
13 4 0.14
ACGTcount: A:0.09, C:0.34, G:0.15, T:0.43
Consensus pattern (12 bp):
GACCCGTTTTTC
Left flanking sequence: Indices 21963 -- 22462
ACGAAAAGCCCACCACGACGAGAAGCGCCGCGAGGGAGAGCTGGGAGAGCCCTCCGAGGTAGACC
CCCACCGCCATGAACGGAAGATACGCCATCGCCATCATGGGCACCGCCTGGCCCACGTAAAAGTG
CCAGGGAGCGGTGCCGTAGAACACCAGGAGGTTGTTGACCACGTTGAACCGGAGAAAGTTGGCCA
TGGGCACGGTCCACTGGCCGTAGAACTGGCGGTCGACCACGGCACAGGCTCCCACCATCGCCACG
AGCACCGCCAGGGCCACGCCAAGAAGCCTCGCCCGTCGTCTGGTGCGGCCCACGAGCGCCAACCC
GAGGGGGGCCCAGAGCAACGCGTTGGTGGGCCGGATGACACAGCTGAGGTACGCCAACGCGAGCG
AAGCTACGAGGCCCAAGTCTGGGGGGATTATTGATTTATACGCGCTTTTGGACCCCTTTTTGGAC
ACTTTTTTGGATCCATTATTGGACGCGTATTTCTCACCCTTTTGG
Right flanking sequence: Indices 22510 -- 23009
TTCCCCCTTTGACCCGTTTCTGGTTCCCTTTCTAGCTCTCTTGGTACCCTCGCTAAACCACGGCC
AGAAGACCATCGCCCCCACCGTAAGCACCGTCTCGAACCCGTTGGCAAACGACCGCGTCAGCACG
TACCAGTTGAACGGATTGAAAAGCGACAACCCAAGCGCCACCCCGGCCGTCTTCTCGTCGTGGTA
CGCCCCCACCCACTTGTACAACGCCACCTCGCCCACCGCCGCCACCATCGCGTTGATCAACTTGG
GCACGAGCACCACCGCACGTGCGCGGTCCGACCCCACCGCGCGCACGAGCGAGTAGCCCACCATG
TACACCGCCGGGTGCACCAGCAGCCGGAGCTGCTCGGGCCACTCCCACGTCTCGTACCCGTAGCC
AAACACCTTGACGTGGGCGATCTCGAGCGCCTGGTAGAACTCGTCCGCCTGGAAAAACGTGGAGA
GCGTGAGCAGGTTGACGAGCCGCCACACAGCAACAGCCAATGCCA
Found at i:22525 original size:21 final size:24
Alignment explanation
Indices: 22470--22528 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
22460 TGGGACCCGT
*
22470 TTTTCGACCCGTTTTTCTCACCCC
1 TTTTGGACCCGTTTTTCTCACCCC
*
22494 TTTTGGACCCGTTTTTTTC-CCCC
1 TTTTGGACCCGTTTTTCTCACCCC
22517 -TTT-GACCCGTTT
1 TTTTGGACCCGTTT
22529 CTGGTTCCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 9 0.27
22 3 0.09
23 4 0.12
24 17 0.52
ACGTcount: A:0.07, C:0.36, G:0.12, T:0.46
Consensus pattern (24 bp):
TTTTGGACCCGTTTTTCTCACCCC
Left flanking sequence: Indices 21970 -- 22469
GCCCACCACGACGAGAAGCGCCGCGAGGGAGAGCTGGGAGAGCCCTCCGAGGTAGACCCCCACCG
CCATGAACGGAAGATACGCCATCGCCATCATGGGCACCGCCTGGCCCACGTAAAAGTGCCAGGGA
GCGGTGCCGTAGAACACCAGGAGGTTGTTGACCACGTTGAACCGGAGAAAGTTGGCCATGGGCAC
GGTCCACTGGCCGTAGAACTGGCGGTCGACCACGGCACAGGCTCCCACCATCGCCACGAGCACCG
CCAGGGCCACGCCAAGAAGCCTCGCCCGTCGTCTGGTGCGGCCCACGAGCGCCAACCCGAGGGGG
GCCCAGAGCAACGCGTTGGTGGGCCGGATGACACAGCTGAGGTACGCCAACGCGAGCGAAGCTAC
GAGGCCCAAGTCTGGGGGGATTATTGATTTATACGCGCTTTTGGACCCCTTTTTGGACACTTTTT
TGGATCCATTATTGGACGCGTATTTCTCACCCTTTTGGGACCCGT
Right flanking sequence: Indices 22529 -- 23028
CTGGTTCCCTTTCTAGCTCTCTTGGTACCCTCGCTAAACCACGGCCAGAAGACCATCGCCCCCAC
CGTAAGCACCGTCTCGAACCCGTTGGCAAACGACCGCGTCAGCACGTACCAGTTGAACGGATTGA
AAAGCGACAACCCAAGCGCCACCCCGGCCGTCTTCTCGTCGTGGTACGCCCCCACCCACTTGTAC
AACGCCACCTCGCCCACCGCCGCCACCATCGCGTTGATCAACTTGGGCACGAGCACCACCGCACG
TGCGCGGTCCGACCCCACCGCGCGCACGAGCGAGTAGCCCACCATGTACACCGCCGGGTGCACCA
GCAGCCGGAGCTGCTCGGGCCACTCCCACGTCTCGTACCCGTAGCCAAACACCTTGACGTGGGCG
ATCTCGAGCGCCTGGTAGAACTCGTCCGCCTGGAAAAACGTGGAGAGCGTGAGCAGGTTGACGAG
CCGCCACACAGCAACAGCCAATGCCAACTTGTAGAGCAGTAGCAT
Found at i:23662 original size:11 final size:11
Alignment explanation
Indices: 23631--23662 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
23621 TAGTCCGTTG
*
23631 GCGTTGAGCCT
1 GCGTTGAGCTT
23642 GCGTTGAGCTT
1 GCGTTGAGCTT
23653 GCGTTGAGCT
1 GCGTTGAGCT
23663 GTCAATTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.22, G:0.38, T:0.31
Consensus pattern (11 bp):
GCGTTGAGCTT
Left flanking sequence: Indices 23131 -- 23630
TCGAACGGGGACGTAGACGACACCGTTAACGAGACACCGTGGCAATCACACCGTGGGAATGCATG
CTGTGGGCACGCACACCTTAGGGACGCACCGTAGTTAGTTCCATGTGATTTCCAGACACTTTGTT
GGCTCGTTTTGGCTTTGAGGCTCTCCTCGGGCCTGCTTCCTGCTTCTTATCTCCATAGTACTATT
TCCGTCTCTCAGCCGCATTGGCCTTAACCCCTATTAACCATTTTTGCCCCTGTTTCATCCCTACT
CTCTCCACACAGCCTGAAACCTCCCGTGATCTGAAACAAGGTTGCCTGTCCGTTTCGTGATCGTC
TCACACAATCACCGACAATCCTCTACGATCCCACTAGCCTTTCGCAACAATAGGCGATGGTCGAC
TTGAGGCGGGCTCCGGCCGGTTGACGAGCACGCACGCAGACGCAGACGCGTCGGGGGGAAGCACT
CCATGGGCCCTGGCAGCGGCGGTAGGCTCCTACATTAGTCCGTTG
Right flanking sequence: Indices 23663 -- 24162
GTCAATTAACCGGCTTTCCAGCCTGCTTCCAGCCTACTTTCTACCCTACTTTCTGACCCTACTTT
CTCACCCTTTCTCTTGTAGCCTCGTGGTAACCTAAACAGTACACTAGACACCGCCAGATACAGAT
GAAACCGTGCCGTTACAGGCAGCCCGACACCAACATCGAACCATAGTGACGGCATCATCGCCATC
AGCGTAGTTGCAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAGCCT
CTAAACACCGCCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCCGTG
TGTGCCCCCAGGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAATTG
CCGACCCCGCCAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGCAA
ACGGGTGCGTCCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCG
Found at i:23712 original size:12 final size:13
Alignment explanation
Indices: 23695--23735 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
23685 CTGCTTCCAG
23695 CCTACTTTCT-AC
1 CCTACTTTCTCAC
*
23707 CCTACTTTCTGAC
1 CCTACTTTCTCAC
23720 CCTACTTTCTCAC
1 CCTACTTTCTCAC
23733 CCT
1 CCT
23736 TTCTCTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.15, C:0.44, G:0.02, T:0.39
Consensus pattern (13 bp):
CCTACTTTCTCAC
Left flanking sequence: Indices 23195 -- 23694
GCTGTGGGCACGCACACCTTAGGGACGCACCGTAGTTAGTTCCATGTGATTTCCAGACACTTTGT
TGGCTCGTTTTGGCTTTGAGGCTCTCCTCGGGCCTGCTTCCTGCTTCTTATCTCCATAGTACTAT
TTCCGTCTCTCAGCCGCATTGGCCTTAACCCCTATTAACCATTTTTGCCCCTGTTTCATCCCTAC
TCTCTCCACACAGCCTGAAACCTCCCGTGATCTGAAACAAGGTTGCCTGTCCGTTTCGTGATCGT
CTCACACAATCACCGACAATCCTCTACGATCCCACTAGCCTTTCGCAACAATAGGCGATGGTCGA
CTTGAGGCGGGCTCCGGCCGGTTGACGAGCACGCACGCAGACGCAGACGCGTCGGGGGGAAGCAC
TCCATGGGCCCTGGCAGCGGCGGTAGGCTCCTACATTAGTCCGTTGGCGTTGAGCCTGCGTTGAG
CTTGCGTTGAGCTGTCAATTAACCGGCTTTCCAGCCTGCTTCCAG
Right flanking sequence: Indices 23736 -- 24235
TTCTCTTGTAGCCTCGTGGTAACCTAAACAGTACACTAGACACCGCCAGATACAGATGAAACCGT
GCCGTTACAGGCAGCCCGACACCAACATCGAACCATAGTGACGGCATCATCGCCATCAGCGTAGT
TGCAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAGCCTCTAAACAC
CGCCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCCGTGTGTGCCCC
CAGGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAATTGCCGACCCC
GCCAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGCAAACGGGTGC
GTCCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGACTGCCCCATGGTCGCAAT
GGACGCTGCCAGAGCCCGTCCGGGCTACGGGACAGCTCCTCCTCT
Found at i:24249 original size:12 final size:13
Alignment explanation
Indices: 24226--24279 Score: 60
Period size: 12 Copynumber: 4.2 Consensus size: 13
24216 TACGGGACAG
24226 CTCCTCCTCTCGC
1 CTCCTCCTCTCGC
24239 CTCCT-CTCTCGC
1 CTCCTCCTCTCGC
*
24251 CTCACCTCCTCTC-T
1 CT--CCTCCTCTCGC
24265 C-CCTCCTCTCGC
1 CTCCTCCTCTCGC
24277 CTC
1 CTC
24280 TTCTCGCTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
11 9 0.26
12 10 0.29
13 6 0.18
14 4 0.12
15 5 0.15
ACGTcount: A:0.02, C:0.61, G:0.06, T:0.31
Consensus pattern (13 bp):
CTCCTCCTCTCGC
Left flanking sequence: Indices 23726 -- 24225
TTCTCACCCTTTCTCTTGTAGCCTCGTGGTAACCTAAACAGTACACTAGACACCGCCAGATACAG
ATGAAACCGTGCCGTTACAGGCAGCCCGACACCAACATCGAACCATAGTGACGGCATCATCGCCA
TCAGCGTAGTTGCAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAGC
CTCTAAACACCGCCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCCG
TGTGTGCCCCCAGGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAAT
TGCCGACCCCGCCAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGC
AAACGGGTGCGTCCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGACTGCCCCA
TGGTCGCAATGGACGCTGCCAGAGCCCGTCCGGGCTACGGGACAG
Right flanking sequence: Indices 24280 -- 24779
TTCTCGCTTAGCCTAGACCCTTTCCCTACATGCGTCGCGTGACCCTCGTATTCCCGCGTCCTCCT
CCTCTACTCCACCTCCCTGGAGGCCGTTCACGCGCCTGCCCCTGGGCGTCGCCGAAACGCGATCG
ATAGCCTAATTTTTGCTGCTTTGCGGCAAAACAGACCGCCTCGTGCAGGAGCGTTGTTGAAAACA
CTCCACACTTCGCTGACACCACGGCATCTCCACCGACCTGTGCTAGTACTGCCCCTCTCGGTTCC
TCGCCGTGCCCCTCCTCCGTCCCCCGCGCCTAACGCATCACGCCACTCCCGCGTGGCCAAGATCA
GGTGACCCCGTCAACGACACCTACCACTTAACCACCACCCTCGAACCGCAACCGGAACCGTCCAA
AATTACCCCGAGTGCTCCCATGGCGGACGCCTCAAGGACCCACATGTTCTTGATGGACGAGTTCG
TCGACGTGATCCGCCTCATCGAGCAGTCCCACTACTTGGCGGCGT
Found at i:24272 original size:19 final size:17
Alignment explanation
Indices: 24238--24269 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24228 CCTCCTCTCG
24238 CCTCCTCTCTCGCCTCA
1 CCTCCTCTCTCGCCTCA
24255 CCTCCTCTCTC-CCTC
1 CCTCCTCTCTCGCCTC
24270 CTCTCGCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.03, C:0.62, G:0.03, T:0.31
Consensus pattern (17 bp):
CCTCCTCTCTCGCCTCA
Left flanking sequence: Indices 23738 -- 24237
CTCTTGTAGCCTCGTGGTAACCTAAACAGTACACTAGACACCGCCAGATACAGATGAAACCGTGC
CGTTACAGGCAGCCCGACACCAACATCGAACCATAGTGACGGCATCATCGCCATCAGCGTAGTTG
CAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAGCCTCTAAACACCG
CCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCCGTGTGTGCCCCCA
GGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAATTGCCGACCCCGC
CAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGCAAACGGGTGCGT
CCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGACTGCCCCATGGTCGCAATGG
ACGCTGCCAGAGCCCGTCCGGGCTACGGGACAGCTCCTCCTCTCG
Right flanking sequence: Indices 24270 -- 24769
CTCTCGCCTCTTCTCGCTTAGCCTAGACCCTTTCCCTACATGCGTCGCGTGACCCTCGTATTCCC
GCGTCCTCCTCCTCTACTCCACCTCCCTGGAGGCCGTTCACGCGCCTGCCCCTGGGCGTCGCCGA
AACGCGATCGATAGCCTAATTTTTGCTGCTTTGCGGCAAAACAGACCGCCTCGTGCAGGAGCGTT
GTTGAAAACACTCCACACTTCGCTGACACCACGGCATCTCCACCGACCTGTGCTAGTACTGCCCC
TCTCGGTTCCTCGCCGTGCCCCTCCTCCGTCCCCCGCGCCTAACGCATCACGCCACTCCCGCGTG
GCCAAGATCAGGTGACCCCGTCAACGACACCTACCACTTAACCACCACCCTCGAACCGCAACCGG
AACCGTCCAAAATTACCCCGAGTGCTCCCATGGCGGACGCCTCAAGGACCCACATGTTCTTGATG
GACGAGTTCGTCGACGTGATCCGCCTCATCGAGCAGTCCCACTAC
Found at i:27722 original size:12 final size:12
Alignment explanation
Indices: 27705--27732 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
27695 CAAAGGTCTC
27705 TGTTGGCTCATT
1 TGTTGGCTCATT
27717 TGTTGGCTCATT
1 TGTTGGCTCATT
27729 TGTT
1 TGTT
27733 TGCACAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.25, T:0.54
Consensus pattern (12 bp):
TGTTGGCTCATT
Left flanking sequence: Indices 27205 -- 27704
TTCAGAACGTTAGTCTACCACCATGGGTCTCATTTGTTGGCACTCGAGACCTTTTTTTTTAACAA
CCTTTTTTTTAACAAAGAAGACACTCCGATGTCTCTATGCAGCGACTCGTGTCTACACTATTTTC
TATTACAAACCACCCGTCGAATTGCAACCATTCGAAGTGTAAAATTTAAAGCGTTCATCCACAAC
CATAGGTTTCTGCTCGAGACATTTGTTCAAAAGGAAGAACCTCCGGTCTCTCTTTGCAACTTGGT
TCTACACTTTTGTCTGTCACAAACCGTCGAATTTGCAACCATTCGGAGTGTATAAATCAGAGCTT
TAGTCTACAACCATAGATCCATTTGATGGCACTTGGGACAATTGTTTTCCAGTGAAAACCCTCCA
ATGGCCTCTGCAACAGCTCGGTTTTAAACTTTTGTCTGTCCCAAACCCGCCGAATTTGCAACCAT
TCAGAGTGTCAAAATTCGGAGCGTTATTCTACATCCAAAGGTCTC
Right flanking sequence: Indices 27733 -- 28232
TGCACAATTGGAAATTTGTTCTGTTTGTCTTCCCTCGATGCCTCTGCAACTTGGTCGCTATTTTC
TGTCACAAACCACCCGTCCATTTTGCAACCACCACATTTCCCAAAATTTTGCAACATCCCTAAAA
ACTGTCGGACAAAAGCGAAGCGAGATGCAACTACCAGATGGTCAGACACACCTCAAAAGTCCCCA
CGACAGACAGTCACTGAGCTATATTTAGTGTGGTAGAATACAGAAACAAGAGAGACATCTACAAA
AAGACCCCGCTACCCAGAACGCCCTGCGAGCGATCGTAAACGTGGTGGCTTTTTCAAAACAAACC
AGCCGAGTGACACCCAACAATACCAGACCATTAAGCCCCGTTCTATTTTTACCACCGCATCGTTC
TATTTTTTTGCAACCACGTAGCAGCCGACATAAGCTGTCAAATGACAGCCAAATGACAGCCGTTG
GCCGTCTCGGAGACGTTGGGGAGCCAGTAACCGTCGAGGACCGTT
Found at i:28389 original size:16 final size:16
Alignment explanation
Indices: 28368--28408 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
28358 TCAAGCTACT
28368 AGCCGTCGCATCCACA
1 AGCCGTCGCATCCACA
28384 AGCCGTCGCATCCACA
1 AGCCGTCGCATCCACA
*
28400 AGCCATCGC
1 AGCCGTCGC
28409 TCATCGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.44, G:0.20, T:0.12
Consensus pattern (16 bp):
AGCCGTCGCATCCACA
Left flanking sequence: Indices 27868 -- 28367
CGGACAAAAGCGAAGCGAGATGCAACTACCAGATGGTCAGACACACCTCAAAAGTCCCCACGACA
GACAGTCACTGAGCTATATTTAGTGTGGTAGAATACAGAAACAAGAGAGACATCTACAAAAAGAC
CCCGCTACCCAGAACGCCCTGCGAGCGATCGTAAACGTGGTGGCTTTTTCAAAACAAACCAGCCG
AGTGACACCCAACAATACCAGACCATTAAGCCCCGTTCTATTTTTACCACCGCATCGTTCTATTT
TTTTGCAACCACGTAGCAGCCGACATAAGCTGTCAAATGACAGCCAAATGACAGCCGTTGGCCGT
CTCGGAGACGTTGGGGAGCCAGTAACCGTCGAGGACCGTTCCCAGAATACTTTTACGAAGATGCA
TCCACTACGGACCCGTATATGTCGGTACCAGACATCGCTAGCTCCTACCAGACACCACTACGCCC
GTCGCGTTGAGCTCTGCGCCAAGACAGCCCTCGCTTCAAGCTACT
Right flanking sequence: Indices 28409 -- 28908
TCATCGGTCATCGCTCATCAACGCGGCTGCCCACCAAAACGAACATCCCATCGCGTCCAACTACC
ATACTCACCCAAGCACGATAAGCAGCCCCACTCAAATACCCACGGAGCGGGCTCCTCGTCCGAAC
TCCGTCGCGAATGCAAGCCTCAACGGACTAGCCACATTCCCGACCGTTTTCCGATAGACTATCGT
AAACGTCGCTATCGATGATAGGTGCGTCGCTACTCCGATCCGTGGGGGCTCCAAGCATGTTTGAC
ACGCACAAGCCGCCGGCGTTACTTCCATTTTGGGCGTGCTGAAGTCCGCAGCTTATGACTTTGAC
TAGCCTCAAAAATAGGGTAGCCGCGGATGCAGCTTATTGTTTGAGTCTCATGTCTTGAGCCTTGG
CAAACGCGATGGGGAGACAGAAGTGTACCATCCACCATCAGCTCCCATCACTGATCGTAAGCAGC
TACACCCCACGTGGTCCAAGCCCCTGGCCACGGCTACTTCCGTGG
Found at i:30728 original size:13 final size:13
Alignment explanation
Indices: 30712--30754 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
30702 AACCATTTTT
30712 CACCAACCGTAGC
1 CACCAACCGTAGC
30725 CACCAACCGTAGC
1 CACCAACCGTAGC
30738 CACCAACCGTAG-
1 CACCAACCGTAGC
30750 CACCA
1 CACCA
30755 GCAGCTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 5 0.17
13 25 0.83
ACGTcount: A:0.33, C:0.47, G:0.14, T:0.07
Consensus pattern (13 bp):
CACCAACCGTAGC
Left flanking sequence: Indices 30212 -- 30711
GACATCTTTGACGAGCTCACGAAGGACGAGCTGATTGTGGCGGTGACCACCCACTCGGGGGCGAT
GCGGACGCAGTTGTTGGTGCTCGGCCACCGCCCGTTCGCCGTGGGCACCGGCGGGCTCATCCCGG
TGTTTGTCAAGGCCGAGAAGGTAACTAGACCCGACCTCTAGACAAGTAGATACGAAAACAATATA
ATTACAAAACAGCTGGCGACACCGCGGGATTTTCCAGGGACGAGAGCCGAATGTCGCCCACGGCG
AGTATACGTGGCTTTGACCCGTTTTGTGGACCTCGTTTTGCCGTAGCGATAAGCTGGCCAACCCG
GGGCGCACATAGTGCATGCGTAAGGGACAAACTCCCGGGGAATAAGGTTAGCGGACGTGTAGGGG
TTTAACCCAGTGGTGCTGGAACACAGTGGATACTGAGAGGGTAGCTCGGCAATCCCACCGGGCGT
ACAGGGGGCAAAAGCTCGAAGTGGAATTTTTCACGAACCATTTTT
Right flanking sequence: Indices 30755 -- 31254
GCAGCTAAAAATTTTCAACCCCACCCGTTTTTGTCACCTACACCGCTCACACGAGCTGCGGGCTG
CAGTAGGTCGGGGATTAGCCACCGGTCGGTTGACTCGAGACATATTATCACGCCCTGCGGTTAGA
TTGGTCTAATAGTTTTACGTAATCCGCTGACCCGAGTGTTTGTGGCTAGAGCGTTGACAACGGCC
CAGAGCAACACGGCAAGCAACCCACGCACAATGACCGCCACCGAGTGGACGGTTCCGCTTTGTGT
GCGAGTGCAGAAACCCCACCCTCCGGGTGCCTCGTCCCCGGGTATCCGTCGTGGGTGTCGACAGC
TGAATTCCGACACTACGATCGGTATTGACCCGGGTACGAGCCCCGCCGCACACACAGAATTCTTC
ACAGAAAATAACCTTGGTCCAGAAAATATCCACTGCAACGACACTACCCCTTGGGTCCCCCAAAC
CGCCTTGGCGGCGACACCTCCACAAAAAAAGACTCAAATAAGCGA
Found at i:33956 original size:18 final size:18
Alignment explanation
Indices: 33933--33990 Score: 107
Period size: 18 Copynumber: 3.2 Consensus size: 18
33923 AGAGTAGAAC
33933 GATCCTGTGGTGTCCGTA
1 GATCCTGTGGTGTCCGTA
33951 GATCCTGTGGTGTCCGTA
1 GATCCTGTGGTGTCCGTA
*
33969 GATCCTGTGGTGTCCGTT
1 GATCCTGTGGTGTCCGTA
33987 GATC
1 GATC
33991 TTTGGATCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.10, C:0.22, G:0.33, T:0.34
Consensus pattern (18 bp):
GATCCTGTGGTGTCCGTA
Left flanking sequence: Indices 33433 -- 33932
GCGTGGTCGGACGACGCCCAGGCCAAGCCCTACGAGTTCTCGCCGTTGGTGCCCGCCTACTTGGA
GTACTACAACGCCGTGGACGAGGAGGAGGCGTTTTTGCTGCGGTCCCACTGCATTTCCCAGTTCG
AGCGCAACTACGACCAGGTGTTGCTGCTGCTCTACTTTGCCGGCGCGTTCATGGCGGTGTTTGTC
AGTGCGATCGAGTGTGGTATTGTCTACCTGGTGTTTGAGCTCAGCTCCGAGCTTGTGCTTGGCGA
CTTGATGTGGGTGGTGGTGGTGGTGGTGCTCGGGATGATTTCGAGCTTGATCATGCTGCTTGTGG
CCATCCAGCTCAATCTCCAGCGGTTCCAGCCCGCGCCCACCCTTCATTCCTACGTAGTTTGGATC
CTGCTTACGGTGGTGTCCAACTGTTGCATTTGGCTGCTGGTGATGCTAGCACGCCATATTTAATA
ATTTACGAGTTACGATTGATAAGGTAGATGGAGTTAGAGTAGAAC
Right flanking sequence: Indices 33991 -- 34490
TTTGGATCCTGTGGTGTCCCCTGTGGTGTCCAACTGTTGCATTGGCTGGTGACGCTAGTACTTTA
TTTAATAATTTACGAGTACGATATGATAAGGTAGATTGCAGTCTTAGACGAGATTGCAGTCACAA
CGTAGAGATTGCAGTCACAATCTGACGTAGATAGAGATGTCACAATCCTAGCGCAATCCTGTCAG
TAGCAACCTTTGTCGTGATGCCTTGTTTCATCCCTTTGCAAGACACAATTGCCTGTTGACGTCAG
AGAAGCCCACTCTTATCTCATCGCTTCCCCCACCGCGGATTATGTCACACGACTTAATGTAAGGC
GGCTCCAGGCGTTACCTTGCATTTGGAACACTGTGGCTTAGGTGGTCCTTCTGGTGGGGGACCAC
CGGGACAAGCAGGATTGGCCACCACAAAAAGACCCAGCAGCTTCACCAACCCCCCGCAGCATATT
CGCGGGTGGTTCTCGGCCGCGTCTACCTGCCCCCTTCCAGAAAGC
Found at i:36770 original size:20 final size:20
Alignment explanation
Indices: 36745--36787 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
36735 GAGATTGAAG
36745 GTGGTAAGGG-GGGTAATGTA
1 GTGGT-AGGGAGGGTAATGTA
*
36765 GTGGTAGGGAGGGTAGTGTA
1 GTGGTAGGGAGGGTAATGTA
36785 GTG
1 GTG
36788 ATAGAAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.21, C:0.00, G:0.53, T:0.26
Consensus pattern (20 bp):
GTGGTAGGGAGGGTAATGTA
Left flanking sequence: Indices 36245 -- 36744
GCAATTTGAGCACCATCAAAAGTTTTTTCGCCACCAGCGCGTCCACTTCCACGAGGTACTGGGGG
TCCTTCCCGAGGTCGCCCGGCTGGCCAAAGAACGGCAGCGAGTAGATGAAGGCGTCGCACACCAC
CCGGCCCTTCAGGTTCAAAAACATCAGATTGACCCCGTCCCGCGACACCGTGATCTGGTTGAGCG
GGTCGTAGATGTCCTCGTGCATCAACCCCCAGTTGGTGTGGATGTCCACCTCCTCTAGCTTGTGG
GAGTCGTCGTTCAAACTGATGGTGTGCTGCTTTTTCTTTTTGATGTCGGGCAAGAACCGCAGGGT
GACCAAGCCATTGACGAACTTGGTGGCGTCGGGGCCTTGGATGCGCACGATCCGCTTGGAAAGCT
GGGCTAACCCTCCTATCGGAACCATGGTGTGTGTCGCACTAAAAAAAGAGCAACACCACCTTGAT
GGTGGGAGCGCGCGTGCACACGGGCAGGGCAGCGGGAGATTGAAG
Right flanking sequence: Indices 36788 -- 37287
ATAGAAAGGAAGTATTCGGATCACTGAATCACTGGATCAAGGGCTAGGAACTAGACATGGAGGGT
ACTACAAGAGCACTACAAAAGCACTACGAAAGCACTACAGAAGTACTAAAAAGCATTAAAAAGCA
CATTTACCTAGATCAGACAAGCAAAACACCACAAAACACGAATCAAAACACTACTTAAGGACACG
GCAGCCCACTATTTTGAATGCGCTATTATTATATGCTACCCGCCTGCCTAGGAAGGAGCTCTTCC
CCGTAATTCGCTTTGTTTTCGCTTCGGTTAGTGTCGGAGCGCTTAAGTAATCGGCTATGTAACGG
TGACGTTCCACGACACACCGAACAATGTAGATACACTTCAGGTAACCTTGGGTAACCTTGGTGGT
CGTAGAATACGGTGGTCGCGTGCCACGACACCGTCGCCTACCCTAATTCTTCCGTCGCTCATTCT
CGCGACATTTGGCGTCCCTTCCGGTGGCGTACGGGCCTTAGACGG
Found at i:36869 original size:11 final size:10
Alignment explanation
Indices: 36853--36918 Score: 60
Period size: 11 Copynumber: 6.2 Consensus size: 10
36843 CATGGAGGGT
36853 ACTACAAGAGC
1 ACTACAA-AGC
36864 ACTACAAAAGC
1 ACTAC-AAAGC
36875 ACTACGAAAGC
1 ACTAC-AAAGC
*
36886 ACTACAGAAGT
1 ACTACA-AAGC
*
36897 ACTAAAAAGC
1 ACTACAAAGC
* *
36907 ATTAAAAAGC
1 ACTACAAAGC
36917 AC
1 AC
36919 ATTTACCTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
10 14 0.30
11 31 0.66
12 2 0.04
ACGTcount: A:0.52, C:0.23, G:0.14, T:0.12
Consensus pattern (10 bp):
ACTACAAAGC
Left flanking sequence: Indices 36353 -- 36852
AGATGAAGGCGTCGCACACCACCCGGCCCTTCAGGTTCAAAAACATCAGATTGACCCCGTCCCGC
GACACCGTGATCTGGTTGAGCGGGTCGTAGATGTCCTCGTGCATCAACCCCCAGTTGGTGTGGAT
GTCCACCTCCTCTAGCTTGTGGGAGTCGTCGTTCAAACTGATGGTGTGCTGCTTTTTCTTTTTGA
TGTCGGGCAAGAACCGCAGGGTGACCAAGCCATTGACGAACTTGGTGGCGTCGGGGCCTTGGATG
CGCACGATCCGCTTGGAAAGCTGGGCTAACCCTCCTATCGGAACCATGGTGTGTGTCGCACTAAA
AAAAGAGCAACACCACCTTGATGGTGGGAGCGCGCGTGCACACGGGCAGGGCAGCGGGAGATTGA
AGGTGGTAAGGGGGGTAATGTAGTGGTAGGGAGGGTAGTGTAGTGATAGAAAGGAAGTATTCGGA
TCACTGAATCACTGGATCAAGGGCTAGGAACTAGACATGGAGGGT
Right flanking sequence: Indices 36919 -- 37418
ATTTACCTAGATCAGACAAGCAAAACACCACAAAACACGAATCAAAACACTACTTAAGGACACGG
CAGCCCACTATTTTGAATGCGCTATTATTATATGCTACCCGCCTGCCTAGGAAGGAGCTCTTCCC
CGTAATTCGCTTTGTTTTCGCTTCGGTTAGTGTCGGAGCGCTTAAGTAATCGGCTATGTAACGGT
GACGTTCCACGACACACCGAACAATGTAGATACACTTCAGGTAACCTTGGGTAACCTTGGTGGTC
GTAGAATACGGTGGTCGCGTGCCACGACACCGTCGCCTACCCTAATTCTTCCGTCGCTCATTCTC
GCGACATTTGGCGTCCCTTCCGGTGGCGTACGGGCCTTAGACGGAGTTACTACCACGGCGTTACT
GCGTGGTGGTCACTCCGACGACGCCCATTGTTGCATCTCCAAACGGTGGCAAATTGATTAAAGTT
TACGAACTTCCCCACGTCCTGAGGACGATACCGGGTGGCCTCGGT
Found at i:36886 original size:22 final size:21
Alignment explanation
Indices: 36853--36918 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 21
36843 CATGGAGGGT
36853 ACTACAAGAGCACTACAAAAGC
1 ACTACAA-AGCACTACAAAAGC
* *
36875 ACTACGAAAGCACTACAGAAGT
1 ACTAC-AAAGCACTACAAAAGC
* *
36897 ACTAAAAAGCATTA-AAAAGC
1 ACTACAAAGCACTACAAAAGC
36917 AC
1 AC
36919 ATTTACCTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
20 6 0.16
21 8 0.22
22 21 0.57
23 2 0.05
ACGTcount: A:0.52, C:0.23, G:0.14, T:0.12
Consensus pattern (21 bp):
ACTACAAAGCACTACAAAAGC
Left flanking sequence: Indices 36353 -- 36852
AGATGAAGGCGTCGCACACCACCCGGCCCTTCAGGTTCAAAAACATCAGATTGACCCCGTCCCGC
GACACCGTGATCTGGTTGAGCGGGTCGTAGATGTCCTCGTGCATCAACCCCCAGTTGGTGTGGAT
GTCCACCTCCTCTAGCTTGTGGGAGTCGTCGTTCAAACTGATGGTGTGCTGCTTTTTCTTTTTGA
TGTCGGGCAAGAACCGCAGGGTGACCAAGCCATTGACGAACTTGGTGGCGTCGGGGCCTTGGATG
CGCACGATCCGCTTGGAAAGCTGGGCTAACCCTCCTATCGGAACCATGGTGTGTGTCGCACTAAA
AAAAGAGCAACACCACCTTGATGGTGGGAGCGCGCGTGCACACGGGCAGGGCAGCGGGAGATTGA
AGGTGGTAAGGGGGGTAATGTAGTGGTAGGGAGGGTAGTGTAGTGATAGAAAGGAAGTATTCGGA
TCACTGAATCACTGGATCAAGGGCTAGGAACTAGACATGGAGGGT
Right flanking sequence: Indices 36919 -- 37418
ATTTACCTAGATCAGACAAGCAAAACACCACAAAACACGAATCAAAACACTACTTAAGGACACGG
CAGCCCACTATTTTGAATGCGCTATTATTATATGCTACCCGCCTGCCTAGGAAGGAGCTCTTCCC
CGTAATTCGCTTTGTTTTCGCTTCGGTTAGTGTCGGAGCGCTTAAGTAATCGGCTATGTAACGGT
GACGTTCCACGACACACCGAACAATGTAGATACACTTCAGGTAACCTTGGGTAACCTTGGTGGTC
GTAGAATACGGTGGTCGCGTGCCACGACACCGTCGCCTACCCTAATTCTTCCGTCGCTCATTCTC
GCGACATTTGGCGTCCCTTCCGGTGGCGTACGGGCCTTAGACGGAGTTACTACCACGGCGTTACT
GCGTGGTGGTCACTCCGACGACGCCCATTGTTGCATCTCCAAACGGTGGCAAATTGATTAAAGTT
TACGAACTTCCCCACGTCCTGAGGACGATACCGGGTGGCCTCGGT
Found at i:41173 original size:13 final size:14
Alignment explanation
Indices: 41144--41180 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
41134 GGTGGGCATC
41144 TCGGGCGGGGCTGT
1 TCGGGCGGGGCTGT
*
41158 TCGGGCGGTG-TGT
1 TCGGGCGGGGCTGT
41171 TCGGGCGGGG
1 TCGGGCGGGG
41181 GGTGTCCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.00, C:0.19, G:0.59, T:0.22
Consensus pattern (14 bp):
TCGGGCGGGGCTGT
Left flanking sequence: Indices 40644 -- 41143
GTGGGGTTGCTGTCGCTCTTGTACTACGTCGGGTCCGACGCGGTGCAGAACAAGCGGATCGGGGT
GTTTTCCTACGGGCTGGGGTTGGCCCTGACCCTCTTGTCGTTGAAGGTGGTGGACGACATCTCCT
ACATCACCAAGAACCTCGACTTTGACCACAAGTTGGGTGCGGGGCGCTCGATCGAGTCGCCCGAG
AAGTACCTTGAGGCGATTGCCTTGCGTGAGAAGGCGCACTTGCAGAAGGACTTTGCGCCGCTGGG
GTCGGTGGACCACTTGGCCGAGGGCACCTACTACTTGGACAAGGTTGACGACAAGTTCAGAAGAA
CCTACAAGACGAAGTGATTATAGATTCAACGCACAAGTGTATTAGACGCGTCGGGGAGGCGAAAG
ACCGCGAAAGACTGGTCTAGAACGTAGAACGTAGAATGCGGGGTGAGGAGAGGTAAAACGTATGA
GTTTAGATGGTATGACCAAGAGAGCGGATAGGCTGGGTGGGCATC
Right flanking sequence: Indices 41181 -- 41680
GGTGTCCGGACGGCGTGATCTGGCTGCGATGAGGTCAGTGTGGGGTGGATCTGGTCCAGTGGTGG
ATCTGGCCTGGTGGCCTGAAGAGATAGAGGATAAGGAGGAGGCTCTTTTTATATTGGTTGCCTTC
TCTTTATAATGGTAATGGTGTTTTTGGTAGCCTTCGAATTGGCATATTAAACTTTTATTGTGGAG
AATAAGGTTATGTGGTGGGCTGATGCTATTGTGACACTCATCGCGTGGGCCTACTGTCCTCGTGT
GAGCCAACTAGACCCTCGCGTGAGACGCGAGAATGTGTACTTTTGGTTGGGACACGAAGTGTGTG
GGAATTTGGTAAGCGCACGACACGGTCAAAGAAGGGAAAGCACCAACGTAGAGCCTGCTTTTGGG
CCGCTAAGTGTAAGACAGGTGTTGGAGCATCAGCACAAAACCACCTGCATTGGAGCCACTGTGTG
AAACGGGTGTAGACCTTAGTCTCTCAACTAAAGTACGATGAAAAC
Found at i:42303 original size:11 final size:11
Alignment explanation
Indices: 42287--42315 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
42277 AAATAGTCCA
42287 TGGTGGGGGTG
1 TGGTGGGGGTG
42298 TGGTGGGGGTG
1 TGGTGGGGGTG
42309 TGGTGGG
1 TGGTGGG
42316 TGTGAGTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.72, T:0.28
Consensus pattern (11 bp):
TGGTGGGGGTG
Left flanking sequence: Indices 41787 -- 42286
TTCCTCTTCCATCCCCAACAACTGCGCTTTTCTCGCCTCGGCCTCAATAATCCGCCGCCACGACG
GGTTCAACTCGCGCACCCGCCACGTCGGCCCGGGCTGGCCACTCACCTCGCTATACGGAGGAATA
ATCTGCTTGGGCGCCACCACCGTGCCCCGCCTAATCACACAGCACTCGTAGATCACCGCCCCCGC
GCCTATCTTACACCCGGGCTCGATCCACACGCGGCTCCCGGTCAGCGCCAGCTCCACCACCGCGC
GCTCGCCTATGATATTGTACGACCCGAGCACGCACCCGCCCTCTGGGGGTCTGATCTCGCTGCCT
GCTGCTAGAAACAGGTACTTGCCCACCAGCACCGCTGGCTTCAGTGCCGCGGTGGTCCCGTCGAT
CACTACGCCATCGCACACGGTGGTGTTGCCGGCAATCACCACGTGTTTGGAGCCCGTGATAGTGG
CCCGCCGCGAGATCCGGTTCCCCGTCGGGGTCTCCAAATAGTCCA
Right flanking sequence: Indices 42316 -- 42815
TGTGAGTGGTGTGTCGCAAAACGCGTGTGGTTGGGAGCACGGCGGTGGTGGGTGTTACGAGCCAG
GACACGAGGGTACAGACAGTAGACGACGACGAGACGAGCGAACGGGCTGGGTAGACACGTGGCGC
CCGAGGCGAGGTGTCTTTTTTGCGTCAATTGGCCCATAGTGCCTATTGATCTGCCACGTTGAGTC
CACCGTTGTCGTCGTTCATCGTACCATGCCAAGCAGTTACTCGCTTGCTAATACCAATCACAGTC
GAGGCATTTCAAACCACCAGATCTTCAACGGCTGTCCACTCATCACCACAAACGCTTTCGCGCCC
TCGCGCTCTCCCTCATCATCTCCTGTTGCTCTCATACTTCCCCTCCCTCTCGCGCCCATCGCGCC
CTTCTGGGCCTTCTCCTGCCTAAACGGTGTTTGTGCCCGATTAAGCCTTACAAGTCCGAGGCCGC
GGAGCACGCCGCCAAGCCGGAAAAACCCCTCCCAAAACCCAACCA
Found at i:43121 original size:38 final size:37
Alignment explanation
Indices: 43078--43152 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 37
43068 TTATCCCGTT
43078 CCCGCTCCACGTCCCCCCCACCACGTGTACACGCGAC
1 CCCGCTCCACGTCCCCCCCACCACGTGTACACGCGAC
43115 NCCCGCTCCACGTCCCCCCCACCACGTGTACACGCGAC
1 -CCCGCTCCACGTCCCCCCCACCACGTGTACACGCGAC
43153 ACGTCGCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.16, C:0.56, G:0.16, T:0.11
Consensus pattern (37 bp):
CCCGCTCCACGTCCCCCCCACCACGTGTACACGCGAC
Left flanking sequence: Indices 42578 -- 43077
GGCATTTCAAACCACCAGATCTTCAACGGCTGTCCACTCATCACCACAAACGCTTTCGCGCCCTC
GCGCTCTCCCTCATCATCTCCTGTTGCTCTCATACTTCCCCTCCCTCTCGCGCCCATCGCGCCCT
TCTGGGCCTTCTCCTGCCTAAACGGTGTTTGTGCCCGATTAAGCCTTACAAGTCCGAGGCCGCGG
AGCACGCCGCCAAGCCGGAAAAACCCCTCCCAAAACCCAACCACCGCTCTCTCCGCCCCACTACA
CTACCCCCACGGGCGAACCTTCCCACAGCCCTAACCCCCACCCCTCTCTCCCCCCTCGTGTTGAC
GTAGCCCGGAAAAACTCCATGCACGGCGGTGAACGGTCTCCGAACACCACCAGACACACAACCAC
CGCAAAACCGTGTCAAACCCACGAATCCCGCCCCACAAACGGCCCCATAAAATCCACCGCACCCC
TCTCCACCCCCTCACCACCTCTCCCACCCACTTTTTTATCCCGTT
Right flanking sequence: Indices 43153 -- 43652
ACGTCGCATTTTTCACATAAAACCCGTTAGCGCGCCCAAACCTCCACCACCACCATGACCGTGTT
TCGCATTGACTGCGGGTTCCGCAACTACGACTGGGGCAAGCTCGGAGAGCAGTCTGCCGTGGCCC
AGTTCGCCGAGGCGCTGAACCCAGACACCAAAATTGACCCCGAACAGCCTTACGCCGAGTTGTGG
ATGGGCACCCACCCGTCGGTGCCCGCTGTCAACGTCGACACCCACGAGGTGTTGCGCACGATGAT
CGAGAAGGACCCCAAGCTCGTGGGCGAGGACATCATTGCCCGGTTTGGCGGCCACAAGGAGCTCC
CGTTCCTCTTCAAGGTGCTCTCGATCCGCAAGGCGCTCCTGATCCAGGCGCACCCAGACAAGCAA
CTTGCAAAGCAGTTGCACGCGTCGGACCCCAAGAACTACCCCGACGACAACCACAAGCCCGAGAT
GGCGATTGCCATCACCGACTTCGAGGGGTTCTGTGGCTTCAAGCC
Found at i:44581 original size:21 final size:20
Alignment explanation
Indices: 44536--44590 Score: 83
Period size: 21 Copynumber: 2.7 Consensus size: 20
44526 AAGAGAGTGA
* *
44536 GAAGTAAAGAAGGGAGAAGT
1 GAAGTAAAGAAGGGAAAACT
44556 GAAGTAAAGAAGGTGAAAACT
1 GAAGTAAAGAAGG-GAAAACT
44577 GAAGTAAAGAAGGG
1 GAAGTAAAGAAGGG
44591 GAGACGAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 14 0.44
21 18 0.56
ACGTcount: A:0.51, C:0.02, G:0.36, T:0.11
Consensus pattern (20 bp):
GAAGTAAAGAAGGGAAAACT
Left flanking sequence: Indices 44036 -- 44535
AGGACCCGCACGCGTACATCCTGGGCGACATCATCGAGTGCATGGCCGCGTCCGACAACGTGGTG
CGGGCCGGGTTCACTCCCAAGTTCAAGGACGTGCCCAACTTGGTGCTGATGTTGACGTACTCGTA
CGAGCCCATCGAGAAGCAGAAGATGCCCACCAAGCCGTGCGAGCTTGCGCTGGGCGACGCGGCCA
AGTGTCTCGTGTTTGACCCTCCCATCGACGAGTTTGCCGTGCTCCAGACGGTGGTGGACGCGGGT
AAGCAGCACTTTGACGGGTTTGCGGGGCCGTCGATCATCATCGGCACCAACGGCGCGGGCAAGCT
CGTGGCCGACGGCACCGAGCACGAGTTCCGCCGCGGGTACGTGTTTTTCGTGGCTCCCCACACCG
CCATCGACTTGGTGGCCACCGAAGCGGGCTTCACCACCTACCGTGCGTACGTTTAGTAGCGGGCT
AGTTAATAATAAAGATAGAAGGGAAGGATGAGAAGAAGAGAGTGA
Right flanking sequence: Indices 44591 -- 45090
GAGACGAGAAAAAAGAGAAAAGAGAAACAGACACACTGGAGGGTGTGATTACACGTGTAAGAAGC
GGGTGCTTGGTGGTCACGTAAACTGAAAGGTGTAACCTACACCAAGTTGGTTAGAGCTAGGGTGT
TTCCAAATGCTAAAAAGTAACGATTAATGCTGCTCGCTTGTTGGTGGACTGCACGTCCCCTAGCG
ATAGGTATGAACGTAGACGTTGCTCAGTTGCTCTGATAGCACACTTCTCGTCCTGGTCTTGATCC
TACAGTACTGGTATTAACCCTTCCTATGAGACGCCTACCCATGAACAAGAACGATGAGCTGTTTC
ATACCATCGGTCTTTGATACTTAGTCTCTGTTCACTCGCACCTAAGAACATTTTACCACGCGTAG
TCCTCCCGTTCGTCTTCTCACGGTGCGCGATTGGTGCACATTTCCCTTTTGGGACGATATACGTA
GACACCATTCAAACGATTCAGACACCACCCTAGAGACAACCAGGT
Found at i:45151 original size:19 final size:19
Alignment explanation
Indices: 45127--45164 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45117 TTGACACTAA
45127 GCGCCCCAATAAGTTACCC
1 GCGCCCCAATAAGTTACCC
45146 GCGCCCCAATAAGTTACCC
1 GCGCCCCAATAAGTTACCC
45165 TCCCCTCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.42, G:0.16, T:0.16
Consensus pattern (19 bp):
GCGCCCCAATAAGTTACCC
Left flanking sequence: Indices 44627 -- 45126
TGGAGGGTGTGATTACACGTGTAAGAAGCGGGTGCTTGGTGGTCACGTAAACTGAAAGGTGTAAC
CTACACCAAGTTGGTTAGAGCTAGGGTGTTTCCAAATGCTAAAAAGTAACGATTAATGCTGCTCG
CTTGTTGGTGGACTGCACGTCCCCTAGCGATAGGTATGAACGTAGACGTTGCTCAGTTGCTCTGA
TAGCACACTTCTCGTCCTGGTCTTGATCCTACAGTACTGGTATTAACCCTTCCTATGAGACGCCT
ACCCATGAACAAGAACGATGAGCTGTTTCATACCATCGGTCTTTGATACTTAGTCTCTGTTCACT
CGCACCTAAGAACATTTTACCACGCGTAGTCCTCCCGTTCGTCTTCTCACGGTGCGCGATTGGTG
CACATTTCCCTTTTGGGACGATATACGTAGACACCATTCAAACGATTCAGACACCACCCTAGAGA
CAACCAGGTCAATCACAAAGGCACGGCATCTCCGATTGACACTAA
Right flanking sequence: Indices 45165 -- 45664
TCCCCTCGTTCACTAACCGCTAACCACAAACAAGTGTCTCCTGCACAGCTGCCAAAGAGCACATA
AATACCCTGGTACCCCCTCCAACCAGTTTTTCTTCTTCACAACCTCATCCAATCCGAACCAGGTC
GAGCCGTCCCTGGTAGCAAGCGCGGGTGCCACCAATGCACCTCAGATAACACGGATCTGCTGACA
CGCTGTGTGGACAGTGCGCGATTGTTTGGAGGCCCAAGCCACCGAGCCTGATGGGCAGGACCACT
AGCACGTTGCTAGGGGGACTGCTCGGGCTACGGCCCCAGGTATCGTTGGCTTCGGAGTCTCGCTT
GCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAACAGAATCAA
AGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCTACAAATCAAAGCTTGTCGTTCGCGTGGTGA
TACTGGCTCACCACAGCCTCGGTGCTGCTGCTACTTCTGATGGAG
Found at i:46659 original size:12 final size:12
Alignment explanation
Indices: 46642--46666 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46632 CACTGAGCTG
46642 TCGTCGTATAGC
1 TCGTCGTATAGC
46654 TCGTCGTATAGC
1 TCGTCGTATAGC
46666 T
1 T
46667 TAGTTAGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (12 bp):
TCGTCGTATAGC
Left flanking sequence: Indices 46142 -- 46641
CCTGTTGGTGGTGTCAATGGTATTCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTG
TTGCTCCGTTGACGTTGATGCCATTGGTATCCAATCCGGGTTTCTATCGTAAGTTAGTTAAGCAC
CTGGTGCGCCTCTGGGGTGGCCTGCATGAGCGGGCTATCCTGGAGCCGTACTGGAGGCTTCTAGA
ATATATAGGTTCACCTAATCAACGCTAACTACGGTTACTAGCTAAGAGTCACGTGATCTACGTCA
TATGATTGACTTGCCCAATTTGTACGTCACGTGATTGTTGTCACATTACCTGTTGTCCCATGTGT
ATATCACGTGATTAATGTCACAAGATATGTAAGCCGCATTTGTCTAGTAGTTCACGTGACTGGAG
TCACACCACCTGAGCGACGGTATTAAGTAAGCTCGTACTGACCGGTCCCCACTAACAAAGAGTGT
TATGTAATACTCGTAAAGTCTTGAAATGCCACTAACACTGAGCTG
Right flanking sequence: Indices 46667 -- 47166
TAGTTAGAGGGGGCCGGTTGAGTGTTGTAGGAATATGATAGCCTCAATAACTCGGCGCTTACCAT
AGATACATTAACATTGATGGTCAATACGTGTCGTGAGAAGCTGAAACATTCTAAAAGGGTGGTTT
TCAGGCGATTACACAGCGTTTTGGGCAATCGTGTACCTACCAAGAATGGGAAATAGTCGTGTTCC
GACCAGAATTTTCCCGCCGAAACGGGTAAACTCGAGGTCAGTGCTCCGTCCACACGCCTCCAATG
GTGAAATGAACGTGCTCATTGTAATCCCCTTATCAAGGAGTATCGGAATATGCCGTTTCTAGACC
ATTTCACATTTTGCCCTATTTTTTTTCCGCTTGGTTTCAGTTCAGAGACTTAACATTTTTTTTGT
ATGGGAAATGCGAAAGGGCCATTTTTTCGCAAAAGTCCCATGCTCTACAAGGGCCTTAAATTTCC
CCAAATCTGAAAGTGCCGTTTTCGAGCTTTTTCGATGTTAGAGGG
Found at i:48189 original size:32 final size:32
Alignment explanation
Indices: 48148--48217 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
48138 ATTTCACCAC
48148 TCCATCCCTCACAAATCACACCCACTAAGCCT
1 TCCATCCCTCACAAATCACACCCACTAAGCCT
* ** * * *
48180 TCCATCCCTCTCGGATCACACCCAGTAATCTT
1 TCCATCCCTCACAAATCACACCCACTAAGCCT
48212 TCCATC
1 TCCATC
48218 TATTCACCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.26, C:0.44, G:0.06, T:0.24
Consensus pattern (32 bp):
TCCATCCCTCACAAATCACACCCACTAAGCCT
Left flanking sequence: Indices 47648 -- 48147
AATACAGTTTAGTCACGTGACTCTAAGCCAGAAAGAATAGGACTATACGGATACCAGAGCCCAAG
GGTCCAGAGAGCATTAAAGTCGTGGCTTCAACCATTCATCTCCTTTATGGGCACACTGGCTTTTG
GCCCATACTCCCCTGGGACCCTCCCTTCAACAATGACTCTCAAGATATGCACACGTTGATCAAAC
TGTGTGTGGATTAGGACCGTTATGGGCAATATCTGTCCCTCCTACGCAGTGGTAGTTTCTTACTC
ACTCGCTACACCACTTTATTACACCACCCGTCTAAAGTTTACGTTCTGGAAAGGGTCCTTTTCTC
CTTAATTAGATCTAGTTTCGAAAGCATGTCCACAGTGTTGAGATCAGATGAATCAGATAAAGCAA
TTGCCCCACTCGCTCCACGTCACTCCAAAGCTTTGAAGGCCTCAGTTTGCCTCGCCCAGTTCCAC
GCCACCAGTATCACTCCACTAGTAGAGTAACGACAATTTCACCAC
Right flanking sequence: Indices 48218 -- 48717
TATTCACCTTTCCATCTCACCCCAACCACACCATACTTGGCCCACCCGTCCCCCCACAATTCTAT
TTATAACCCACGCTGTGACGCTAACGCGTCCCACACCACCCTCGGAGATCGACCCAGCCGGGCCG
CCCGCAAAGGCGGTATACCTCCGTCACCACGCATCGGCTGTGCCTCATTTGCCTTATTGAGCTGG
TGCTCACACCATACATGCCTCAGGCCATGTGACACCCACAACGTGGCCAAACCCGTGAAAAATCA
CGTTGTCTCGCCAAAACACCTACAATCGCCAGTCACCCACCTCTTCACCACTCTTCCCCGACCCA
TTGCCCTGCCCGGGCTGTGTCAATCCAGCAATCTCTGTCTGCACTGGCAACCGAAAAAGGGTCTG
TAGCCACACCATCGCACAACCGCGCAAAACCCACGCCCACGCCACTCCCACCACCCAAACTAAAC
CTCCTCTACCCTCCCTCACCCTCTCCCACCACACCACACCACCCG
Found at i:49224 original size:6 final size:6
Alignment explanation
Indices: 49210--49254 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
49200 CCGGGGCAGA
* * * *
49210 GGCCGT GGTCGT GGTCGT GGGCGG GGCCGT GGCCGT GGCCGT GGC
1 GGCCGT GGCCGT GGCCGT GGCCGT GGCCGT GGCCGT GGCCGT GGC
49255 GGGCGTGGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.27, G:0.56, T:0.18
Consensus pattern (6 bp):
GGCCGT
Left flanking sequence: Indices 48710 -- 49209
ACCACCCGCCACCTCGTTTTTCCCCCCAGAGCCCGCCCAACGTCTGATCCTGCCCTGCACCCTCC
TGCACACGCCCCTCTCAAAAGGCCCCGGTTTTTCACTGGCCCCACGACATGAACGACCACCATCC
CGAGGGGAGCGAAGAGGCCCACGCGGCCGCATTGTACGCTCAGCAGCAGCTCGAGGCCGCCAAGT
ACGCCCACCAACAGGAAATCGACTCTCGCCTGGTGTATGTGGGCAATGTGGACTACGAAACCACC
CCACCAAACCTCGAGGATTTCTTCACCCAGGCCGGAGAGATCGTTCGCATCACGATTTTGCAGGA
CCGGTACACGGGGATGCCCAAGGGGTATGCGTACATCGAGTTCACTACGCCGCAAGCGGTGGAAA
AGGCGATTACCGAGCTAAACGGGCAGTTGTTCCGCAACCGTGAGCTCCGGGTGACGCTGAAACGC
ACGAATTTGCCCGGGTTCCGCAACCGGGGTGGTTTCCGGGGCAGA
Right flanking sequence: Indices 49255 -- 49754
GGGCGTGGGAGCCACAGCGACCGCATGGGCGGTCCTGAGCCCGGAAACGAGCTTTACGAGGCACA
GCTGACACCAGAGGCGCCCCAGGCGGCAGCCCCGCTGGATAGTGAGCTCACAGCGCACATGGAGG
CGGTGACATTGGAGGAGAAGGCCCCGGAGGGGGCGCACTCGAGCTAATTGTGTATATCGAGTAAT
GTATAACTTGCTGGTCAGAAGCGGGGTTCGTAGGGGTGTGGGGGCTCTGGTGGAGTGTCTGGTGG
TGTGTGTGTGGTGATTCTGGCTACGGGTGGGTCGGGAGGTGCTCAATTGGCGTTTGTGCCCGGTG
GGCTTGTGTAATTCTCACTTTGTTTGGGTCGGTAGGGTCTATAAGGGGATTGGGGGGTCCTACGG
TGATACTTGTGAGTTCGTAGGCTGGCTTGTGGCCGTATCAGTAACAGCTCGGTAGCACTCCCAAC
CACCACTCGCCTCACTTATTCCCGGTCGCTCGGGACCACCTCTTA
Found at i:49238 original size:24 final size:23
Alignment explanation
Indices: 49210--49257 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
49200 CCGGGGCAGA
* *
49210 GGCCGTGGTCGTGGTCGTGGGCGG
1 GGCCGTGGCCGTGGCCGT-GGCGG
49234 GGCCGTGGCCGTGGCCGTGGCGG
1 GGCCGTGGCCGTGGCCGTGGCGG
49257 G
1 G
49258 CGTGGGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.00, C:0.25, G:0.58, T:0.17
Consensus pattern (23 bp):
GGCCGTGGCCGTGGCCGTGGCGG
Left flanking sequence: Indices 48710 -- 49209
ACCACCCGCCACCTCGTTTTTCCCCCCAGAGCCCGCCCAACGTCTGATCCTGCCCTGCACCCTCC
TGCACACGCCCCTCTCAAAAGGCCCCGGTTTTTCACTGGCCCCACGACATGAACGACCACCATCC
CGAGGGGAGCGAAGAGGCCCACGCGGCCGCATTGTACGCTCAGCAGCAGCTCGAGGCCGCCAAGT
ACGCCCACCAACAGGAAATCGACTCTCGCCTGGTGTATGTGGGCAATGTGGACTACGAAACCACC
CCACCAAACCTCGAGGATTTCTTCACCCAGGCCGGAGAGATCGTTCGCATCACGATTTTGCAGGA
CCGGTACACGGGGATGCCCAAGGGGTATGCGTACATCGAGTTCACTACGCCGCAAGCGGTGGAAA
AGGCGATTACCGAGCTAAACGGGCAGTTGTTCCGCAACCGTGAGCTCCGGGTGACGCTGAAACGC
ACGAATTTGCCCGGGTTCCGCAACCGGGGTGGTTTCCGGGGCAGA
Right flanking sequence: Indices 49258 -- 49757
CGTGGGAGCCACAGCGACCGCATGGGCGGTCCTGAGCCCGGAAACGAGCTTTACGAGGCACAGCT
GACACCAGAGGCGCCCCAGGCGGCAGCCCCGCTGGATAGTGAGCTCACAGCGCACATGGAGGCGG
TGACATTGGAGGAGAAGGCCCCGGAGGGGGCGCACTCGAGCTAATTGTGTATATCGAGTAATGTA
TAACTTGCTGGTCAGAAGCGGGGTTCGTAGGGGTGTGGGGGCTCTGGTGGAGTGTCTGGTGGTGT
GTGTGTGGTGATTCTGGCTACGGGTGGGTCGGGAGGTGCTCAATTGGCGTTTGTGCCCGGTGGGC
TTGTGTAATTCTCACTTTGTTTGGGTCGGTAGGGTCTATAAGGGGATTGGGGGGTCCTACGGTGA
TACTTGTGAGTTCGTAGGCTGGCTTGTGGCCGTATCAGTAACAGCTCGGTAGCACTCCCAACCAC
CACTCGCCTCACTTATTCCCGGTCGCTCGGGACCACCTCTTATCT
Found at i:53772 original size:15 final size:15
Alignment explanation
Indices: 53752--53784 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
53742 AGTGAGTAGT
53752 GGAGAATGGTGGGTA
1 GGAGAATGGTGGGTA
53767 GGAGAATGGTGGGTA
1 GGAGAATGGTGGGTA
53782 GGA
1 GGA
53785 AATTTGGCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.55, T:0.18
Consensus pattern (15 bp):
GGAGAATGGTGGGTA
Left flanking sequence: Indices 53252 -- 53751
GCTGGTGGTGAAGAGAAGGAGATCGAGACCTGGCGCGAGCGCAAGGAGCGGCTAGCCGAGGAGGA
TGCCCGCAAAATCAAGCCCGAGGACATTGCCCACACCGAGGACCCGGCCCAGATCCCCGAGGGCG
AGGCCCGGATCATCCGTGACGACGAGGGCAAGGTGGTCAAGGTGATCCAGGGTACCATGAAGCCC
AAGCCCGTGGAGCCCGAGGCCGCCACCCCGCTCATCCAGACCCTCGAGGAGATGGCGCAGAAGAA
CGCCAGCCGGGAGCGGGACCACCACCAGACCGCGAGAGAAACTGACATTATGCGGATGTTGTACG
AGAAGCACGGCGATGACTACGAGGCGATGAAGTGGGACAAGCACTTGAACCTGTTCGCGTTGCTG
CCGGGGGTGTTGCGCAAGAAGATGAAGCTTTGGAAGAAGAAACACAACATTGAGTGAACGCTGGG
TGTTCGCATTATAGAAATAGATAAGCAGGAATGGGAGTGAGTAGT
Right flanking sequence: Indices 53785 -- 54284
AATTTGGCGGGTTTAGGATCTGGCCACATAGAGTTGGGCAAAAGCCCGTACGCATAAGGATTTAA
GATCGGGTGAAATATGGTGTGTGTGCGTTATTCGTTGTACAAATGGTGTCTTGTTTCTATCGTAA
CATCGTTCTATGTGTCTATAACAAGGGGTGTTTGAAGTGTGATTTGGGGATGGTGTAACGAGAAT
AGTCTGAGTTGAGAATTTACAAGAAGACCTTGGTTGCGAGTTGGGTGGTGTCAAAGTCAGGAATA
GCCGTAAACTATGGAACCTAACGGGACCAGTAAATGCCAATAGCGAGACAAGCTTGAAAGATACC
TGGATGTTATCAGACTAATATCAGAGCTGAACCAAATGAACCTGACAACACGCTCACTCATCACA
CCTAGACTCTCGCTTTGCCTTCGTTTTCCAACGCCTTCGCCACGATCTGCTCCATGATCGGCTTG
AGCTCGCACTTGTCGTACAACTCGATCAACTTGGCGTCGGACCGG
Found at i:55107 original size:10 final size:10
Alignment explanation
Indices: 55092--55119 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
55082 GAGTCGGTTA
55092 GGTGGTTGGT
1 GGTGGTTGGT
55102 GGTGGTTGGT
1 GGTGGTTGGT
55112 GGTGGTTG
1 GGTGGTTG
55120 TAGTAATTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.61, T:0.39
Consensus pattern (10 bp):
GGTGGTTGGT
Left flanking sequence: Indices 54592 -- 55091
AAGTACCGGGCGGAGTGTCGATCAACAAGTAGTCCAAATCGTCCCACACCACGTCCTTGAGGAAC
TGCTTGATCATCGCCGTCTTTTTGGGTCCTCTCCACACCACCGAGTCGCCCCGGTTGTTGAGCAA
GAACCCGAGGGACATGAGCCAGAGCCCACCCCGGTCGGCCAGCCGCGGATATACATTGACAGGTA
CCCACCCGCGTGTCAGCTGGTGCACCTGCTTGTCCTCGACGCCAAACATCCGGGGGGCCAGGGGT
CCTGTGAGGTCGATGTCGAGCACACCCACGTTGAACCCCTTGTTGACGAGGGTGAGGGCGGTCTG
GGTGGTCACCGACAGCTTGCCCACGCCGCCTTTGCCCGAGAGGATGAGCACGATGTGCTTGACGT
TCTCAAGGGACTTGGGAGTGTCCATGGTTAGTAATGCGAGTGAAAAAGATAAGGTGTGGTTGAGG
TATAGTGGTGGTGTGTGGGGATAAGTAGTGGGGTAGAGTCGGTTA
Right flanking sequence: Indices 55120 -- 55619
TAGTAATTCGCGTTGTTAGGGTGGCGAGTGTGTGTTGTGGTTGTTCGTGGCGGTTACTGGTAGGT
AGTCTATTTGGCTAGGAGCTTGATCGCACTGTGATCTCTCGTGGAAGGAGATGGGAAAAGGCAAT
AAAGAGCCAGGAGAGGTCTCTACACGTGTATCATCGATGTAGCACATTCATAGACGTAGCACATA
TTCACGAATACAGTCAATCATCACCCACCGTCTAGCTATAGTATTTTTCACCACCCTTCCTCTCT
CCACCACCACACTAGCTACGCTCAACTACTCCTACCCACCAACCACACGCAAACACCACTCGCAG
CACTGCTCCAAAGCTCCATACCCTACGCCACCGCAATTCCCACCTCTTTCCCCCCCTTTTCACAA
CTCCACCACCCACATCCCCACCACCTTATATATTCCAGCCGCACGCACTTTTCACCATGGACGCC
AAAGAGGAACAGCTCCAGGAGCTCGAGGTGATCGAGTCGATCTAC
Found at i:62402 original size:13 final size:13
Alignment explanation
Indices: 62384--62423 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
62374 TATTAACCGG
62384 ACCCCTCTGGTCC
1 ACCCCTCTGGTCC
62397 ACCCCTCTGGTCC
1 ACCCCTCTGGTCC
*
62410 A-CCCACTGGTCC
1 ACCCCTCTGGTCC
62422 AC
1 AC
62424 ACTGGGTGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.12, C:0.53, G:0.15, T:0.20
Consensus pattern (13 bp):
ACCCCTCTGGTCC
Left flanking sequence: Indices 61884 -- 62383
AGTAGCGACGGACGAGGGTGGTGGCAGGTACTTACCGCCATCGTTGGGGTCCGAGTCCATGGCGT
TGCTTGGATCAGCGATGTTTTGTTAGTGGCGTGCAGGACGCGTGTTTGGGTGGGGTGCGGCGCTA
CCGGGTTTGGGTGGTGAGGGTGAGGGGACGGAGACGGTGGCGAATAGCGGGAGAACTAGGGCGGT
GAGCGTGAAACGGGGTTGGGAGGTTCGTTTGGATTTCACAGCAGATTTCGGCGACAGTTTGCGAT
CCGGGCTGCTGTGACCCTAGCCACCGCCGTCCGCATCGCACTGTCTCATCGCTGTCAGCTCGTTT
GACAGCTATTATCGTCTGCGGGCGGCCTGCGAGACCCGCGCAATAATGTAATTGCGAGAAACGCT
CCGCTAAGAGATACGTGGTTACCTGCGAGAGAAACGCCAAGACGCTCGCCTGCGCCTGGGCAGGC
GGCCAGACCGGATCCGCAGCGCTTTGTTTTGGTGTTATTAACCGG
Right flanking sequence: Indices 62424 -- 62923
ACTGGGTGCTCCCCACCGGCCTCTTATCCTGGCTGCTGTTCTCGGGCCGGGATTGCATGTCCGGC
ATCCGATGCGCTACCACCCCAACGGCGGTCTAGACTAGGCAGGTAAATACGACAAAAGCAAGATA
GGTGTACGAAATCAGCAATAGAGTAGCTTATTCGGTGTTCCGGTCACGGATCTCAATAGGGCCAA
TAGGGCACGTTGCTGCCACCGTGGCGAGCAATGTGGCTCTCCCGGCAATCTAACACGACGACGCC
CTCACCGTGCCAGTGTTCATCTACCCTGCCAGTGGCTCCACTTTGGATCAGCGTTGGTGCGTCGG
TTTGATGCCCGACGCATGTAGCGAGGCGCATCCAGGGCCGATCCCGAGCCAGAACACCGGTGGGC
TGATGGTGGGCCCACTCGGAGGAAAGATTACCCCACACAGTGTCAACTGCTGCGGCGGTGCTACG
ACGTGCGTGTATCGCCTGGCCATTGTTCAGGCGATGCTGAAACTC
Found at i:62420 original size:12 final size:12
Alignment explanation
Indices: 62390--62423 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
62380 CCGGACCCCT
*
62390 CTGGTCCACCCCT
1 CTGGTCCA-CCCA
62403 CTGGTCCACCCA
1 CTGGTCCACCCA
62415 CTGGTCCAC
1 CTGGTCCAC
62424 ACTGGGTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.12, C:0.50, G:0.18, T:0.21
Consensus pattern (12 bp):
CTGGTCCACCCA
Left flanking sequence: Indices 61890 -- 62389
GACGGACGAGGGTGGTGGCAGGTACTTACCGCCATCGTTGGGGTCCGAGTCCATGGCGTTGCTTG
GATCAGCGATGTTTTGTTAGTGGCGTGCAGGACGCGTGTTTGGGTGGGGTGCGGCGCTACCGGGT
TTGGGTGGTGAGGGTGAGGGGACGGAGACGGTGGCGAATAGCGGGAGAACTAGGGCGGTGAGCGT
GAAACGGGGTTGGGAGGTTCGTTTGGATTTCACAGCAGATTTCGGCGACAGTTTGCGATCCGGGC
TGCTGTGACCCTAGCCACCGCCGTCCGCATCGCACTGTCTCATCGCTGTCAGCTCGTTTGACAGC
TATTATCGTCTGCGGGCGGCCTGCGAGACCCGCGCAATAATGTAATTGCGAGAAACGCTCCGCTA
AGAGATACGTGGTTACCTGCGAGAGAAACGCCAAGACGCTCGCCTGCGCCTGGGCAGGCGGCCAG
ACCGGATCCGCAGCGCTTTGTTTTGGTGTTATTAACCGGACCCCT
Right flanking sequence: Indices 62424 -- 62923
ACTGGGTGCTCCCCACCGGCCTCTTATCCTGGCTGCTGTTCTCGGGCCGGGATTGCATGTCCGGC
ATCCGATGCGCTACCACCCCAACGGCGGTCTAGACTAGGCAGGTAAATACGACAAAAGCAAGATA
GGTGTACGAAATCAGCAATAGAGTAGCTTATTCGGTGTTCCGGTCACGGATCTCAATAGGGCCAA
TAGGGCACGTTGCTGCCACCGTGGCGAGCAATGTGGCTCTCCCGGCAATCTAACACGACGACGCC
CTCACCGTGCCAGTGTTCATCTACCCTGCCAGTGGCTCCACTTTGGATCAGCGTTGGTGCGTCGG
TTTGATGCCCGACGCATGTAGCGAGGCGCATCCAGGGCCGATCCCGAGCCAGAACACCGGTGGGC
TGATGGTGGGCCCACTCGGAGGAAAGATTACCCCACACAGTGTCAACTGCTGCGGCGGTGCTACG
ACGTGCGTGTATCGCCTGGCCATTGTTCAGGCGATGCTGAAACTC
Found at i:64871 original size:3 final size:3
Alignment explanation
Indices: 64865--64899 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
64855 CGACGACATG
* *
64865 GAC GAC GAC GAC GAT GAC GAC GAC GAC TAC GAC GA
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GA
64900 GCCCGAGCCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.29, G:0.31, T:0.06
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 64365 -- 64864
CCCTGGCCGCCACCAACCAGTTGCTCACCCGCTACCACTCGCGCACCCCGCCCGCCATCTCCACC
GCACGCTACTTGGCCCGGTTGGTCAAGTTCAACAACTTCAACCAGGCGACGTTGCTCACCACCAT
CTACTACATCGACTTGTTGCTGCACCAGTACCAGCCGTTCTTCACGCTTAACTCGTGGACGGTGC
ACCGGTTCTTGCTTGTGGCGACGATGATCCTGCAAAAGCTGATGGAGGACTTCTTCTACACCAAC
GACCACTACGCCAAGGTGGGCGGTGTGGCCATCAGCGAGTTGAACTGTCTCGAGCTCGACTTTTT
GCTGCGGGTCGACTGGCGGTGCATCCCTGCCAAGCAGGTGGGGGGGCACCTGAGCATCAAGTACG
CCAAGGACGTGTTGGACTTGTACTACACCCAGTTGGTGGAGCTCATGGGCAAGAACGCGCTGGGC
GGCGACAATTTGCATTACTTTAGACAGGAGGACTACGACGACATG
Right flanking sequence: Indices 64900 -- 65399
GCCCGAGCCGTACGAGCCCGAGGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCTGCTTAATG
GCAAGTCGTCGCCACACTTGAAACGACGCTACTCGGAATAGGATAATAGGTTTTTATATACGGTT
TGGATAGGAATAAAGGATAGGAATAAGGTTAGGAATAATGAAGAGTTGGGATGAAGAGTTGAAAG
TGGAGTGTTTTAGTTTATTGGTTCTATGTGAGGAGCCAGTAGGGAGGCCTAAACACCAGTGGACG
AGTTTCAGGTGGACACCACTTTAATTAGTTTCAGGCTAATAACACACCAGTTTGATAAGTTTCAG
TACCACACCGCTTTGAATCATTTCATGTTGTGACACCATCTTGATTAACTGTGGCACCAGTTAAT
TAGTTCCAGGTTGTGACATTAGTTCTAGGTTGTGACACTAGTTCAGCCGGTGACACCAATTCACA
TGTTCCATTGTCTCTAACGTTTCACCCCTGCTACGGTTTGTACAA
Found at i:64872 original size:15 final size:16
Alignment explanation
Indices: 64849--64891 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
64839 TTAGACAGGA
*
64849 GGACTACGACGAC-AT
1 GGACGACGACGACGAT
64864 GGACGACGACGACGAT
1 GGACGACGACGACGAT
64880 -GACGACGACGAC
1 GGACGACGACGAC
64892 TACGACGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 24 0.92
16 2 0.08
ACGTcount: A:0.33, C:0.28, G:0.33, T:0.07
Consensus pattern (16 bp):
GGACGACGACGACGAT
Left flanking sequence: Indices 64349 -- 64848
GACCCACGGCCCGAGACCCTGGCCGCCACCAACCAGTTGCTCACCCGCTACCACTCGCGCACCCC
GCCCGCCATCTCCACCGCACGCTACTTGGCCCGGTTGGTCAAGTTCAACAACTTCAACCAGGCGA
CGTTGCTCACCACCATCTACTACATCGACTTGTTGCTGCACCAGTACCAGCCGTTCTTCACGCTT
AACTCGTGGACGGTGCACCGGTTCTTGCTTGTGGCGACGATGATCCTGCAAAAGCTGATGGAGGA
CTTCTTCTACACCAACGACCACTACGCCAAGGTGGGCGGTGTGGCCATCAGCGAGTTGAACTGTC
TCGAGCTCGACTTTTTGCTGCGGGTCGACTGGCGGTGCATCCCTGCCAAGCAGGTGGGGGGGCAC
CTGAGCATCAAGTACGCCAAGGACGTGTTGGACTTGTACTACACCCAGTTGGTGGAGCTCATGGG
CAAGAACGCGCTGGGCGGCGACAATTTGCATTACTTTAGACAGGA
Right flanking sequence: Indices 64892 -- 65391
TACGACGAGCCCGAGCCGTACGAGCCCGAGGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCT
GCTTAATGGCAAGTCGTCGCCACACTTGAAACGACGCTACTCGGAATAGGATAATAGGTTTTTAT
ATACGGTTTGGATAGGAATAAAGGATAGGAATAAGGTTAGGAATAATGAAGAGTTGGGATGAAGA
GTTGAAAGTGGAGTGTTTTAGTTTATTGGTTCTATGTGAGGAGCCAGTAGGGAGGCCTAAACACC
AGTGGACGAGTTTCAGGTGGACACCACTTTAATTAGTTTCAGGCTAATAACACACCAGTTTGATA
AGTTTCAGTACCACACCGCTTTGAATCATTTCATGTTGTGACACCATCTTGATTAACTGTGGCAC
CAGTTAATTAGTTCCAGGTTGTGACATTAGTTCTAGGTTGTGACACTAGTTCAGCCGGTGACACC
AATTCACATGTTCCATTGTCTCTAACGTTTCACCCCTGCTACGGT
Found at i:65047 original size:13 final size:13
Alignment explanation
Indices: 65031--65067 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
65021 TATACGGTTT
65031 GGATAGGAATAAA
1 GGATAGGAATAAA
65044 GGATAGGAAT-AA
1 GGATAGGAATAAA
*
65056 GGTTAGGAATAA
1 GGATAGGAATAA
65068 TGAAGAGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.32, T:0.19
Consensus pattern (13 bp):
GGATAGGAATAAA
Left flanking sequence: Indices 64531 -- 65030
GTTCTTCACGCTTAACTCGTGGACGGTGCACCGGTTCTTGCTTGTGGCGACGATGATCCTGCAAA
AGCTGATGGAGGACTTCTTCTACACCAACGACCACTACGCCAAGGTGGGCGGTGTGGCCATCAGC
GAGTTGAACTGTCTCGAGCTCGACTTTTTGCTGCGGGTCGACTGGCGGTGCATCCCTGCCAAGCA
GGTGGGGGGGCACCTGAGCATCAAGTACGCCAAGGACGTGTTGGACTTGTACTACACCCAGTTGG
TGGAGCTCATGGGCAAGAACGCGCTGGGCGGCGACAATTTGCATTACTTTAGACAGGAGGACTAC
GACGACATGGACGACGACGACGATGACGACGACGACTACGACGAGCCCGAGCCGTACGAGCCCGA
GGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCTGCTTAATGGCAAGTCGTCGCCACACTTGA
AACGACGCTACTCGGAATAGGATAATAGGTTTTTATATACGGTTT
Right flanking sequence: Indices 65068 -- 65567
TGAAGAGTTGGGATGAAGAGTTGAAAGTGGAGTGTTTTAGTTTATTGGTTCTATGTGAGGAGCCA
GTAGGGAGGCCTAAACACCAGTGGACGAGTTTCAGGTGGACACCACTTTAATTAGTTTCAGGCTA
ATAACACACCAGTTTGATAAGTTTCAGTACCACACCGCTTTGAATCATTTCATGTTGTGACACCA
TCTTGATTAACTGTGGCACCAGTTAATTAGTTCCAGGTTGTGACATTAGTTCTAGGTTGTGACAC
TAGTTCAGCCGGTGACACCAATTCACATGTTCCATTGTCTCTAACGTTTCACCCCTGCTACGGTT
TGTACAACTACCTCACCGTAGCTGTGTGTGCCTTTGGCTGTTTGTGCCCGTGGCTTTGCGCTCGT
TTCACGAAGCTTCTCGGTGCTTTGTGCCACCAGATTACGACTACCCTTCGCTACCGCAAATGAGC
GCAAAGGGGCCAAAACGCAACCACCTTGAAAAAGAAAAGGCGAGC
Found at i:65312 original size:19 final size:19
Alignment explanation
Indices: 65288--65333 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
65278 GCACCAGTTA
65288 ATTAGTTCCAGGTTGTGAC
1 ATTAGTTCCAGGTTGTGAC
*
65307 ATTAGTTCTAGGTTGTGAC
1 ATTAGTTCCAGGTTGTGAC
*
65326 ACTAGTTC
1 ATTAGTTC
65334 AGCCGGTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (19 bp):
ATTAGTTCCAGGTTGTGAC
Left flanking sequence: Indices 64788 -- 65287
TGGTGGAGCTCATGGGCAAGAACGCGCTGGGCGGCGACAATTTGCATTACTTTAGACAGGAGGAC
TACGACGACATGGACGACGACGACGATGACGACGACGACTACGACGAGCCCGAGCCGTACGAGCC
CGAGGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCTGCTTAATGGCAAGTCGTCGCCACACT
TGAAACGACGCTACTCGGAATAGGATAATAGGTTTTTATATACGGTTTGGATAGGAATAAAGGAT
AGGAATAAGGTTAGGAATAATGAAGAGTTGGGATGAAGAGTTGAAAGTGGAGTGTTTTAGTTTAT
TGGTTCTATGTGAGGAGCCAGTAGGGAGGCCTAAACACCAGTGGACGAGTTTCAGGTGGACACCA
CTTTAATTAGTTTCAGGCTAATAACACACCAGTTTGATAAGTTTCAGTACCACACCGCTTTGAAT
CATTTCATGTTGTGACACCATCTTGATTAACTGTGGCACCAGTTA
Right flanking sequence: Indices 65334 -- 65833
AGCCGGTGACACCAATTCACATGTTCCATTGTCTCTAACGTTTCACCCCTGCTACGGTTTGTACA
ACTACCTCACCGTAGCTGTGTGTGCCTTTGGCTGTTTGTGCCCGTGGCTTTGCGCTCGTTTCACG
AAGCTTCTCGGTGCTTTGTGCCACCAGATTACGACTACCCTTCGCTACCGCAAATGAGCGCAAAG
GGGCCAAAACGCAACCACCTTGAAAAAGAAAAGGCGAGCTCAAAACAGCAATTGCGGTCGGCCAA
GACCGTGGGTGTGGGGAACCCCCGTGGGTGTCTGGCGGGGTGTGGTGGTCTTCTAAGCCCCCATC
GATGGCCCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTGGGTACGAGCTGGAGAC
GACAGAAACAGCGTGGAACCGGTACCGAAAGCGGAGGTCTAGAATTACTACAAGCAGTAAGCGTG
AGGGGTTAGGGGTAAGGTTCAGGGCTTAGCGCGAATAGGCAGTTA
Found at i:66170 original size:9 final size:8
Alignment explanation
Indices: 66153--66220 Score: 52
Period size: 8 Copynumber: 8.8 Consensus size: 8
66143 CGAATCAAAC
66153 CCACACAA
1 CCACACAA
66161 CCACACCAA
1 CCACA-CAA
*
66170 CCATAC-A
1 CCACACAA
* *
66177 CCAAACCA
1 CCACACAA
*
66185 CTACAC-A
1 CCACACAA
*
66192 CCAAACAA
1 CCACACAA
66200 CCACAC-A
1 CCACACAA
*
66207 CCAAACAA
1 CCACACAA
66215 CCACAC
1 CCACAC
66221 TGACAACCCA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
7 17 0.36
8 23 0.49
9 7 0.15
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.03
Consensus pattern (8 bp):
CCACACAA
Left flanking sequence: Indices 65653 -- 66152
CCCATCGATGGCCCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTGGGTACGAGCT
GGAGACGACAGAAACAGCGTGGAACCGGTACCGAAAGCGGAGGTCTAGAATTACTACAAGCAGTA
AGCGTGAGGGGTTAGGGGTAAGGTTCAGGGCTTAGCGCGAATAGGCAGTTACCGGATCGGGAAGC
GCGGTCGAGAAGTGGGGAAGGACATGATGACTTGAAGGAGTAAGGGAAGATAGGGGTGTTTGGGG
TTTGGGGCTTTGGAGGTTGGTAGACTGGTACTGATTGGGTAGTCACTTCGACAAATTGTGTCAAG
CGGACACAATGACATTGTGGTGGTGACACAATTGTGACATTGATGCACCAGTGACACGACTGGAG
AGTGGTTAGCGGTGCTGGGTCGTAGACGAGCCAAGCAAGGAGGTGATTGCTAGTGGAGAAACCAG
GTGTATAGCCAATCGTTTAACTAACCATGGATAGGCGAATCAAAC
Right flanking sequence: Indices 66221 -- 66720
TGACAACCCACACAACCCACATAACCTCTAAACCCACGCGACTGTTTCATCGCATTCCACCCCTA
AGCCCACAAAATCAACCAATACCCCTCCAATCCACCATCTACATCTCTACCCACCAATCTCCACC
CACACCTCCACCCACTACCAATTAATGCAAACGTTTATAACAAAAACAAAACAAAAGGAACTAAA
ATACATCATAACGGTCGTCTACTGGGGCTTTATAAGCTCAAACGAGCAGTATAGGCTCTTGTCCA
CCAGCATCACCGCACCAAAGTTTTTGAACTCGCCACAGTAGTTGGGCGCCGAAAACACCGTCACA
AGCTTGCGCTTGTTGAAAAACTCGTACCCGTCCTCCACCACCATGTGCCCGCGCACAATCAAGTC
CATCTTGAACGTCAGACAGAAGTGGTCGACGTGGCGCTTGCCAAAGCAGTACAGGACCCCGCGGT
CGTTCTTGGGCCAGTTGGTGGACAGATAGTGCTTGATCAGCGGGT
Found at i:66194 original size:15 final size:15
Alignment explanation
Indices: 66153--66220 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 15
66143 CGAATCAAAC
*
66153 CCACACAACCACACCAA
1 CCACAC-ACCA-AACAA
* *
66170 CCATACACCAAACCA
1 CCACACACCAAACAA
*
66185 CTACACACCAAACAA
1 CCACACACCAAACAA
66200 CCACACACCAAACAA
1 CCACACACCAAACAA
66215 CCACAC
1 CCACAC
66221 TGACAACCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 35 0.80
16 4 0.09
17 5 0.11
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.03
Consensus pattern (15 bp):
CCACACACCAAACAA
Left flanking sequence: Indices 65653 -- 66152
CCCATCGATGGCCCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTGGGTACGAGCT
GGAGACGACAGAAACAGCGTGGAACCGGTACCGAAAGCGGAGGTCTAGAATTACTACAAGCAGTA
AGCGTGAGGGGTTAGGGGTAAGGTTCAGGGCTTAGCGCGAATAGGCAGTTACCGGATCGGGAAGC
GCGGTCGAGAAGTGGGGAAGGACATGATGACTTGAAGGAGTAAGGGAAGATAGGGGTGTTTGGGG
TTTGGGGCTTTGGAGGTTGGTAGACTGGTACTGATTGGGTAGTCACTTCGACAAATTGTGTCAAG
CGGACACAATGACATTGTGGTGGTGACACAATTGTGACATTGATGCACCAGTGACACGACTGGAG
AGTGGTTAGCGGTGCTGGGTCGTAGACGAGCCAAGCAAGGAGGTGATTGCTAGTGGAGAAACCAG
GTGTATAGCCAATCGTTTAACTAACCATGGATAGGCGAATCAAAC
Right flanking sequence: Indices 66221 -- 66720
TGACAACCCACACAACCCACATAACCTCTAAACCCACGCGACTGTTTCATCGCATTCCACCCCTA
AGCCCACAAAATCAACCAATACCCCTCCAATCCACCATCTACATCTCTACCCACCAATCTCCACC
CACACCTCCACCCACTACCAATTAATGCAAACGTTTATAACAAAAACAAAACAAAAGGAACTAAA
ATACATCATAACGGTCGTCTACTGGGGCTTTATAAGCTCAAACGAGCAGTATAGGCTCTTGTCCA
CCAGCATCACCGCACCAAAGTTTTTGAACTCGCCACAGTAGTTGGGCGCCGAAAACACCGTCACA
AGCTTGCGCTTGTTGAAAAACTCGTACCCGTCCTCCACCACCATGTGCCCGCGCACAATCAAGTC
CATCTTGAACGTCAGACAGAAGTGGTCGACGTGGCGCTTGCCAAAGCAGTACAGGACCCCGCGGT
CGTTCTTGGGCCAGTTGGTGGACAGATAGTGCTTGATCAGCGGGT
Found at i:68557 original size:14 final size:15
Alignment explanation
Indices: 68538--68573 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
68528 GACACAAAGC
68538 GGTTTGTACGA-GAG
1 GGTTTGTACGACGAG
*
68552 GGTTTGTACGACGGG
1 GGTTTGTACGACGAG
68567 GGTTTGT
1 GGTTTGT
68574 GGCTACGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.14, C:0.08, G:0.44, T:0.33
Consensus pattern (15 bp):
GGTTTGTACGACGAG
Left flanking sequence: Indices 68038 -- 68537
TTTGCCGATGATAAAAATGATGTTGCGACCCGTGCACGTGACCGGAAGATAGGGGAGTGGGCGGT
GTTTACGAGCGAGCGGGCCGGCGGTGGCTACGGGAGAGGAGGCGGTTCTACGACGTTGGTGCCAC
CGGGAGACGTGTTGCGGCGTGTCCCGCATGCTTGCTCGACCCTTTAGTTAACTGGTCGCGTGGCA
TGCCAATTTGTCATCCCCAACCGGTCCCCACGTTGTCTGCACGTGCCCGCCTCGCAACGGGCCTG
CGATAGGCCACGGAGGTGGCGATGGGCCCACCGGGCGCCACACGGCTGACCGGGGCTCGGACATG
GTACTGGGCGCTGGCGGGACGCGCGGGGTCCTGGTGGCCCGTGCCCGTGGCGGGGTGGGTGTGTC
CGGACGGCCACCGGATCCGTGCCGGCCCGCGATGGCTCGCTGGAATAGGTAGTAGTTAGCGCAGA
TCGGAGATATGATTGGGCTGAGCAAGTGTGGTGGCGACACAAAGC
Right flanking sequence: Indices 68574 -- 69073
GGCTACGTGTTGGCGACGTGGCCAACGGCGGGGTAGGCTTGGCCGTCAGGGGCTGCCAGCCAACG
GCTGCAACAATACCCCACAGGTTTGTGCCCTGCCCAGACCGATTGAGAAAACGGTGGCACGAGTA
AACAAAGCGTGGTGTTAAGGTGTCAAAACGGTGACACAAAGAGAGGGTTGCTACGGTTGACAGCT
GGACGGTTGACAGCTGGGTGAGATGGAGAAAACGTCGGGCTGGCCCCTTATCGCATAGGGGTTTC
TTGGCATGCAGCAGAACCACCTTCTCAAACCCCGCCTGAAGCAACCACGCCATCGTAGCGAGGAA
AAGAAAGAAGACGACGGAAAAAAGAAGGAAAGAAAGGTCTAGATTCTGGATGGCGAGTCATGAGG
CGGCGAGATTGGCGGTGTAGGCACGTCACGGTGAAAGACCGTCACGGTAAAAGACCGTCATGAAT
AATTGACCATCACGGTGACTAATACACCGTCACGTAAACTCACAG
Found at i:68776 original size:15 final size:15
Alignment explanation
Indices: 68756--68785 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68746 GAGGGTTGCT
68756 ACGGTTGACAGCTGG
1 ACGGTTGACAGCTGG
68771 ACGGTTGACAGCTGG
1 ACGGTTGACAGCTGG
68786 GTGAGATGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (15 bp):
ACGGTTGACAGCTGG
Left flanking sequence: Indices 68256 -- 68755
GTCCCCACGTTGTCTGCACGTGCCCGCCTCGCAACGGGCCTGCGATAGGCCACGGAGGTGGCGAT
GGGCCCACCGGGCGCCACACGGCTGACCGGGGCTCGGACATGGTACTGGGCGCTGGCGGGACGCG
CGGGGTCCTGGTGGCCCGTGCCCGTGGCGGGGTGGGTGTGTCCGGACGGCCACCGGATCCGTGCC
GGCCCGCGATGGCTCGCTGGAATAGGTAGTAGTTAGCGCAGATCGGAGATATGATTGGGCTGAGC
AAGTGTGGTGGCGACACAAAGCGGTTTGTACGAGAGGGTTTGTACGACGGGGGTTTGTGGCTACG
TGTTGGCGACGTGGCCAACGGCGGGGTAGGCTTGGCCGTCAGGGGCTGCCAGCCAACGGCTGCAA
CAATACCCCACAGGTTTGTGCCCTGCCCAGACCGATTGAGAAAACGGTGGCACGAGTAAACAAAG
CGTGGTGTTAAGGTGTCAAAACGGTGACACAAAGAGAGGGTTGCT
Right flanking sequence: Indices 68786 -- 69285
GTGAGATGGAGAAAACGTCGGGCTGGCCCCTTATCGCATAGGGGTTTCTTGGCATGCAGCAGAAC
CACCTTCTCAAACCCCGCCTGAAGCAACCACGCCATCGTAGCGAGGAAAAGAAAGAAGACGACGG
AAAAAAGAAGGAAAGAAAGGTCTAGATTCTGGATGGCGAGTCATGAGGCGGCGAGATTGGCGGTG
TAGGCACGTCACGGTGAAAGACCGTCACGGTAAAAGACCGTCATGAATAATTGACCATCACGGTG
ACTAATACACCGTCACGTAAACTCACAGCACAACATTACAACGGTGACACTGCCAGTTACCTGCC
AATTACCAGATACCGCCACTTACCTGTCACTTACCAGATACCGCCAATCTCAGCCTGTTTCTGTT
TCTACCGTTTTGCCCTGAATCGCTCAATCTCGAGATCTCATCTACCATCGTACCTATCGTAGATC
TAGTCTGTACCATCGCATCACCATATCGATTTACCATAAATCTAC
Found at i:69006 original size:16 final size:16
Alignment explanation
Indices: 68987--69023 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
68977 GGTGTAGGCA
*
68987 CGTCACGGTGAAAGAC
1 CGTCACGGTAAAAGAC
69003 CGTCACGGTAAAAGAC
1 CGTCACGGTAAAAGAC
69019 CGTCA
1 CGTCA
69024 TGAATAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.14
Consensus pattern (16 bp):
CGTCACGGTAAAAGAC
Left flanking sequence: Indices 68487 -- 68986
CGCAGATCGGAGATATGATTGGGCTGAGCAAGTGTGGTGGCGACACAAAGCGGTTTGTACGAGAG
GGTTTGTACGACGGGGGTTTGTGGCTACGTGTTGGCGACGTGGCCAACGGCGGGGTAGGCTTGGC
CGTCAGGGGCTGCCAGCCAACGGCTGCAACAATACCCCACAGGTTTGTGCCCTGCCCAGACCGAT
TGAGAAAACGGTGGCACGAGTAAACAAAGCGTGGTGTTAAGGTGTCAAAACGGTGACACAAAGAG
AGGGTTGCTACGGTTGACAGCTGGACGGTTGACAGCTGGGTGAGATGGAGAAAACGTCGGGCTGG
CCCCTTATCGCATAGGGGTTTCTTGGCATGCAGCAGAACCACCTTCTCAAACCCCGCCTGAAGCA
ACCACGCCATCGTAGCGAGGAAAAGAAAGAAGACGACGGAAAAAAGAAGGAAAGAAAGGTCTAGA
TTCTGGATGGCGAGTCATGAGGCGGCGAGATTGGCGGTGTAGGCA
Right flanking sequence: Indices 69024 -- 69523
TGAATAATTGACCATCACGGTGACTAATACACCGTCACGTAAACTCACAGCACAACATTACAACG
GTGACACTGCCAGTTACCTGCCAATTACCAGATACCGCCACTTACCTGTCACTTACCAGATACCG
CCAATCTCAGCCTGTTTCTGTTTCTACCGTTTTGCCCTGAATCGCTCAATCTCGAGATCTCATCT
ACCATCGTACCTATCGTAGATCTAGTCTGTACCATCGCATCACCATATCGATTTACCATAAATCT
ACCATCAAACAACAAAGACCACCAGACTACCATCTACCAAACTACCACCACCACCACTCTACCAA
CCACTACCCCACCACCACACAAGTCTACCCCACATTTCACCACCAGCGCTCACCACCTCGCTTAG
TTCGCGTGTTTCGGTGCATGCTGCACTTTACTTCCACGCACCCATGTTGCACCGGATCCGGCTGG
CAGGGTGTCTCATCATCGGGGACGAGGTGCTCAATGGCAAGATCC
Found at i:69144 original size:28 final size:28
Alignment explanation
Indices: 69097--69156 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
69087 CGGTGACACT
*
69097 GCCAGTTACCTGCCAATTACCAGATACC
1 GCCACTTACCTGCCAATTACCAGATACC
* *
69125 GCCACTTACCTGTCACTTACCAGATACC
1 GCCACTTACCTGCCAATTACCAGATACC
69153 GCCA
1 GCCA
69157 ATCTCAGCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.38, G:0.13, T:0.22
Consensus pattern (28 bp):
GCCACTTACCTGCCAATTACCAGATACC
Left flanking sequence: Indices 68597 -- 69096
AACGGCGGGGTAGGCTTGGCCGTCAGGGGCTGCCAGCCAACGGCTGCAACAATACCCCACAGGTT
TGTGCCCTGCCCAGACCGATTGAGAAAACGGTGGCACGAGTAAACAAAGCGTGGTGTTAAGGTGT
CAAAACGGTGACACAAAGAGAGGGTTGCTACGGTTGACAGCTGGACGGTTGACAGCTGGGTGAGA
TGGAGAAAACGTCGGGCTGGCCCCTTATCGCATAGGGGTTTCTTGGCATGCAGCAGAACCACCTT
CTCAAACCCCGCCTGAAGCAACCACGCCATCGTAGCGAGGAAAAGAAAGAAGACGACGGAAAAAA
GAAGGAAAGAAAGGTCTAGATTCTGGATGGCGAGTCATGAGGCGGCGAGATTGGCGGTGTAGGCA
CGTCACGGTGAAAGACCGTCACGGTAAAAGACCGTCATGAATAATTGACCATCACGGTGACTAAT
ACACCGTCACGTAAACTCACAGCACAACATTACAACGGTGACACT
Right flanking sequence: Indices 69157 -- 69656
ATCTCAGCCTGTTTCTGTTTCTACCGTTTTGCCCTGAATCGCTCAATCTCGAGATCTCATCTACC
ATCGTACCTATCGTAGATCTAGTCTGTACCATCGCATCACCATATCGATTTACCATAAATCTACC
ATCAAACAACAAAGACCACCAGACTACCATCTACCAAACTACCACCACCACCACTCTACCAACCA
CTACCCCACCACCACACAAGTCTACCCCACATTTCACCACCAGCGCTCACCACCTCGCTTAGTTC
GCGTGTTTCGGTGCATGCTGCACTTTACTTCCACGCACCCATGTTGCACCGGATCCGGCTGGCAG
GGTGTCTCATCATCGGGGACGAGGTGCTCAATGGCAAGATCCACGACACCAACTCGTTTGAGTTT
GCCAAGATCTGCTTCAACCAGTTGAGCGTGCCCGTGAAGCGGGTGGTGGTGTGCTCGGACGACAA
AACCGACATCCAGCGGTCGTTGCAGCAGTTGCAGGACGACGGCAT
Found at i:73989 original size:13 final size:13
Alignment explanation
Indices: 73971--74059 Score: 135
Period size: 13 Copynumber: 6.9 Consensus size: 13
73961 AGGTGATACG
73971 TAGAGATGGGTGA
1 TAGAGATGGGTGA
*
73984 TCGAGATGGGTGA
1 TAGAGATGGGTGA
* *
73997 TCGAGACGGGTGA
1 TAGAGATGGGTGA
74010 TAGAGATGGGTGA
1 TAGAGATGGGTGA
*
74023 TAGAGATGGTTGA
1 TAGAGATGGGTGA
74036 TAGAG-TGGGTGA
1 TAGAGATGGGTGA
74048 TAGAGATGGGTG
1 TAGAGATGGGTG
74060 GCGTAGAGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
12 11 0.16
13 58 0.84
ACGTcount: A:0.27, C:0.03, G:0.46, T:0.24
Consensus pattern (13 bp):
TAGAGATGGGTGA
Left flanking sequence: Indices 73471 -- 73970
GAGTCACGCCCGACGTCCTCGAGGTCGTTGTGCTTGCCGCCGGCACGGATGCACTTCTGCGAGTT
GGCCGCACGCTTCAACTGGGCAAAGTCCAGCGCCGGGTCCACCGTGCCCAAGAAGATGGCCTTGT
ACTGGTTCATCCCCGCGTTGGCGAACAAGAGCAGCGGGTCGTTGTGGGGCACCACTGAGCCCAGC
GGCACGTAGGTGTGGTTCTGCTTGTCGGTAAAGTACTCCAAGAACGCGGATCTCACCCGCTGGGC
GGGCCACTCAGTGCTGGTAGACATGGTTCGGAGAAGTCTGAGCTGTCTGAGCATGAAAAATGTGC
GAAAAAATGCGTCTGCGGATAAGGGAAGAGGTGGGGAAGAGGGAAAAGAAGGGGACGGGAAGGGG
AAGGGGGCGGTGTTGTGGCTGTTTGTTGGTGGTGGGTGGTTGGTGTTACGTAGAGGTGGGGTGGA
GATGGTGGTGGAGAAGATGGTGGGAGGTTATTAAGAGGTGATACG
Right flanking sequence: Indices 74060 -- 74559
GCGTAGAGATGAGTGACTAGAGGTGAGTCATGGGCGATGACTCAATCGCGGAGTTGGGGAAGTGG
AAACGGAACGTGGTGGGAAAAGAACCGATCTGTGTAGAGGACTACAAACGCGGCTCGGTTAGCAC
ACGCGAAATGGTAAACAGACGCGAGGAAAAGAAAGGGGTGGCTCGTGGAGATGATGGGCTTGTGG
GGGATGACGGAACCAGCAACCGTTAAAGTCTAGGGTTATTTGCGTTATGAGTTTGGCATTTTCGT
AGAGCCATGGCACGCGATAGCCGGCGTGCCTTATCTGGAACTCGAGTGCTTCAACCGATAGCACT
CGTGACTCAACCAACGCTGGCACAGGGCAGCAAACTCTTGGCCCTGTTGACACCTGAATCGCCGC
TTTCACGTGAACACTGTGGTAAGTGTGGTCTGCCTGCCCAGATTTACCACCTCGAGGCACTGGGA
AAAGAAAGGATGAAACACAAGAAAACCGTTGCGACCAGACATCAG
Found at i:75056 original size:18 final size:17
Alignment explanation
Indices: 74998--75057 Score: 54
Period size: 18 Copynumber: 3.6 Consensus size: 17
74988 AGGAAAACTC
* *
74998 ACAGGCGGTCACGGAGGA
1 ACAGGCGTTCA-GGAGAA
*
75016 ACAGGCGTTC--GCGAA
1 ACAGGCGTTCAGGAGAA
75031 AC-GGCGTTCATGGAGAA
1 ACAGGCGTTCA-GGAGAA
75048 ACAGGCGTTC
1 ACAGGCGTTC
75058 TCCACGGCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
17 6 0.18
18 16 0.47
ACGTcount: A:0.27, C:0.23, G:0.37, T:0.13
Consensus pattern (17 bp):
ACAGGCGTTCAGGAGAA
Left flanking sequence: Indices 74498 -- 74997
ACCTCGAGGCACTGGGAAAAGAAAGGATGAAACACAAGAAAACCGTTGCGACCAGACATCAGGGT
CAAAAGCCAAGAGGCTAAAGGCACCGTAGGTGAAATTCTCGTCGTTCTTGGCCATGGTGGATTTA
CTCAGAACGAACGGTACGAAATGTGGATATGGGAATAGATGAAGTTCCCCAAAATCGGCAGACTA
TTCGTTATAGTGTAACGATATCCAGAAATGTAGGTTGTGTAACTATTAAGGTTCACATTCCTGTA
AGTATCACACGGTTTGATGGCCACCGTATTTGGTTAGCTGCAAAACCCGATTTATGGGAGCCATC
AAAAGTTTAAAACCCTGTAACTACCTCATGGTTAGACGGCTACCATATATGGATAGATGCAAAAC
CAGATGAGAGTCAACAGAAACCATTGTCGCTCACTCATCTGAGATGGGTATCCAAGAAACCAGAA
TCCCTGCCCTATATCGGACAACCTGAATACGGTGTAGGAAAACTC
Right flanking sequence: Indices 75058 -- 75557
TCCACGGCGTACCGCCTGTTTACGTATACTACTTTTGGCCGATCTATATACAAAGGACGCCGTAC
CACCATCTTTTGCAGACTTGCTTCGCATATCTGCGCTGCAACGATGATAGCGTTCCTCTTTGCCT
CACCATCGGAGCATACGCAACCTGGTCACGGTGCAACGGAGTTAGCGAGCTCGATCGTGGCGTGA
GTATGGAACCAGCGTAGCCCAGGAGTTTAGACGCCACCCACGAAGCAAGCAAGAGTCCGTTGTTC
GGTATACACTCAACAACAATCTGCTGTGCTTAGACTACTCGTCCTAGTTTCTGGCTTCCAAGCTC
TTGGCTGTGGGTTCTGGTCCTACGTCAGCCGTTGAGGAATTCCATCGCCCAAAATGAGGTGAGGC
ATCGCTCCGCGTAATCTACCATGGCATAACCGTTAAAGTTCTAGGCTTTAACGAACTTGCTCCGG
ACTTGACGACTCTGGCCGTGGAACACCTCGTAAACGTGATGTGTT
Done.