sallet_3.scaffold.fasta.s49.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold61
Parameters: 2 7 7 80 10 50 500
Length:  57713

Tables:   1   

This is table  1  of  1  ( 109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94--151	7	7.7	7	77	11	53	51	0	48	0	1.00
91--151	15	4.0	15	76	6	61	52	0	47	0	1.00
1180--1230	15	3.4	16	89	5	72	15	47	5	31	1.70
1286--1328	14	3.2	14	93	6	72	16	51	0	32	1.45
1291--1330	12	3.2	12	92	7	62	15	55	0	30	1.41
3086--3151	24	2.7	26	77	13	70	46	25	3	24	1.66
3214--3254	18	2.3	18	91	0	64	24	43	2	29	1.67
3517--3545	9	3.2	9	100	0	58	0	55	0	44	0.99
4998--5093	41	2.4	41	85	5	124	35	13	33	17	1.89
5321--5395	39	1.9	39	88	0	114	38	17	26	17	1.92
5774--5843	21	3.3	21	97	0	131	8	54	15	21	1.68
5924--5950	14	1.9	14	100	0	54	29	44	14	11	1.80
6188--6220	10	3.3	10	95	0	57	27	69	0	3	1.03
6898--6947	16	3.3	16	75	16	61	6	8	66	20	1.40
6930--6969	20	2.0	21	85	5	55	5	17	62	15	1.49
7073--7147	11	6.9	11	83	7	100	65	32	2	0	1.07
7073--7147	32	2.3	33	88	2	116	65	32	2	0	1.07
7143--7170	11	2.5	11	100	0	56	46	53	0	0	1.00
7145--7182	13	3.1	13	88	7	53	42	57	0	0	0.98
9149--9175	12	2.2	12	100	0	54	7	0	59	33	1.25
10883--10946	21	3.0	21	95	0	110	23	3	45	28	1.68
12636--12672	15	2.5	15	100	0	74	37	13	40	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12713--12760	10	4.8	10	94	5	80	8	0	54	37	1.31
12943--12973	12	2.7	12	95	5	55	67	25	6	0	1.14
14009--14157	54	2.7	54	82	6	160	40	20	20	18	1.91
14009--14158	27	5.6	27	75	9	144	41	20	20	18	1.91
15278--15345	15	4.5	15	90	0	109	35	22	41	1	1.63
16707--16731	11	2.3	11	100	0	50	24	44	12	20	1.85
20049--20127	12	6.2	13	79	8	74	49	7	41	1	1.39
20175--20212	18	2.1	19	85	5	51	23	31	28	15	1.96
20458--20496	14	2.8	14	92	0	60	35	38	12	12	1.82
20499--20528	9	3.3	9	95	0	51	23	46	0	30	1.52
20602--20675	25	3.0	25	94	6	132	16	47	5	31	1.69
20948--20996	9	5.1	9	81	13	53	28	67	0	4	1.09
24035--24078	15	2.9	15	93	0	70	50	0	40	9	1.34
24092--24148	20	2.8	20	86	0	78	50	1	33	14	1.52
24191--24244	23	2.5	21	75	6	54	51	0	31	16	1.45
24281--24307	14	1.9	14	100	0	54	59	0	22	18	1.38
24305--24344	14	2.7	15	88	7	64	50	0	32	17	1.47
24341--24415	21	3.6	20	76	3	60	45	0	36	18	1.50
24336--24476	42	3.4	40	75	12	115	46	0	35	17	1.53
24381--24429	21	2.3	21	79	6	55	38	0	36	24	1.56
24513--24705	21	9.2	21	71	13	110	53	5	26	15	1.62
25990--26038	18	2.7	18	93	0	80	20	28	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26290--26334	24	1.9	23	90	4	72	6	20	53	20	1.67
26545--26615	18	4.0	18	90	1	108	16	28	42	12	1.85
26608--26720	21	5.4	21	81	8	122	17	23	45	13	1.84
26611--26744	63	2.1	63	87	0	196	17	25	44	13	1.85
26716--26784	21	3.4	21	82	15	92	18	31	37	11	1.87
26712--26775	18	3.4	18	83	12	83	18	29	39	12	1.88
27924--27959	12	3.0	12	91	0	54	47	0	36	16	1.47
27929--27967	12	3.2	12	92	3	60	46	0	35	17	1.49
28002--28026	11	2.3	11	100	0	50	16	32	0	52	1.44
31418--31451	18	1.9	18	94	5	61	41	2	35	20	1.68
31537--31587	20	2.5	20	80	0	66	27	0	47	25	1.53
33647--33922	14	19.3	15	75	11	81	27	21	5	45	1.75
33677--33922	14	17.4	14	77	10	151	27	21	5	46	1.72
33665--33869	87	2.4	87	79	3	225	27	21	5	45	1.73
35397--35458	13	4.8	13	84	11	83	32	30	14	22	1.94
35401--35457	26	2.2	26	96	0	105	33	31	12	22	1.91
35838--35874	11	3.4	11	100	0	74	35	56	8	0	1.29
35840--35872	6	5.8	6	86	13	52	36	54	9	0	1.32
37732--37791	22	2.7	22	89	2	93	18	31	16	33	1.93
37881--37966	13	6.5	13	94	5	147	45	0	45	9	1.35
37881--37993	27	4.1	27	91	6	167	45	0	44	10	1.38
38226--38272	16	2.9	16	93	0	76	23	42	8	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38541--38591	11	4.4	12	95	5	88	54	45	0	0	0.99
38541--38591	23	2.2	23	93	6	86	54	45	0	0	0.99
40144--40390	16	14.7	16	75	14	203	37	5	40	16	1.71
40215--40289	39	1.9	39	97	0	141	38	2	42	16	1.62
40330--40374	23	2.0	23	95	0	81	37	4	42	15	1.67
40334--40384	23	2.2	23	82	0	66	39	5	41	13	1.69
40478--40515	19	2.1	19	95	5	69	26	18	28	26	1.98
40730--40758	9	3.2	9	100	0	58	0	31	37	31	1.58
41972--42031	4	15.0	4	74	19	54	0	1	66	31	1.01
41972--42031	9	7.5	8	80	12	54	0	1	66	31	1.01
41972--42041	26	2.6	25	82	8	77	1	2	65	30	1.15
42174--42200	9	3.0	9	100	0	54	22	0	55	22	1.44
44453--44516	16	4.0	16	81	0	65	34	9	9	46	1.68
45144--45178	15	2.3	15	95	0	61	0	25	51	22	1.48
45288--45372	24	3.5	24	67	12	66	4	28	41	25	1.75
45328--45358	6	5.2	6	92	0	53	3	35	45	16	1.63
45376--45411	12	3.0	12	100	0	72	0	25	41	33	1.55
45397--45436	21	1.9	21	90	10	64	10	30	35	25	1.88
45422--45462	12	3.4	12	96	0	73	7	31	34	26	1.84
45385--45448	33	1.9	33	81	12	78	7	29	35	26	1.85
45422--45480	24	2.5	24	85	0	73	6	30	33	28	1.83
45691--45777	18	4.8	18	72	10	54	4	32	28	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47488--47570	8	11.0	8	78	10	86	26	0	49	24	1.51
48065--48143	19	4.1	19	85	1	86	22	44	2	30	1.66
48068--48152	19	4.4	19	84	1	80	22	41	2	34	1.67
49316--49359	12	3.5	12	76	11	52	13	25	27	34	1.93
49322--49359	12	2.9	14	84	15	62	15	26	26	31	1.96
51684--51728	13	3.5	13	88	11	67	24	31	24	20	1.98
52231--52275	18	2.4	19	88	3	65	28	15	8	46	1.76
52435--52465	16	1.9	16	93	0	53	32	38	12	16	1.86
52516--52559	9	5.0	9	80	5	54	29	36	11	22	1.89
52514--52591	26	3.1	25	85	7	88	28	37	8	25	1.86
53165--53207	18	2.4	18	84	0	59	6	34	41	16	1.75
54468--54498	12	2.7	11	95	5	53	16	29	25	29	1.96
54724--54772	12	4.1	12	89	0	71	8	32	34	24	1.85
54701--54772	36	2.0	36	86	5	101	9	30	34	25	1.88
54716--54768	24	2.2	24	86	0	70	9	30	35	24	1.87
54934--54981	12	4.0	12	80	0	51	8	29	29	33	1.86
54934--54981	24	2.0	24	83	0	60	8	29	29	33	1.86
55009--55108	15	6.7	15	72	4	67	14	26	34	26	1.94
55025--55124	45	2.2	45	100	0	200	15	26	32	27	1.95
55829--55857	9	3.2	9	100	0	58	24	31	24	20	1.98
56144--56196	18	2.9	18	82	0	70	45	30	0	24	1.54

Tables:   1

The End!