Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold61
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 57713
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:107 original size:8 final size:7
Alignment explanation
Indices: 94--151 Score: 53
Period size: 7 Copynumber: 7.7 Consensus size: 7
84 TGAAGTAAAG
94 GAAGGAGA
1 GAAGGA-A
102 GAAGGAAA
1 GAAGG-AA
*
110 AAAGGAA
1 GAAGGAA
**
117 GAAGGGGG
1 GAA-GGAA
125 GAAGGAA
1 GAAGGAA
132 GAAGGAA
1 GAAGGAA
139 GAAGGAA
1 GAAGGAA
146 GGAAGG
1 -GAAGG
152 GAAAGGAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
7 20 0.49
8 20 0.49
9 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (7 bp):
GAAGGAA
Left flanking sequence: Indices 1 -- 93
GGGTTGTGGGTGGGTGGATGGGGTGGTTGGCGATGGGTTAGTGATTGGTAGATCGAGCCGCACGC
GAATGGAAGAAGGGGGGATGAAGTAAAG
Right flanking sequence: Indices 152 -- 651
GAAAGGAAAGGGGATGAAGGGTGGGAAGAGAGTGGAAGACGGGAGAGAAGGGTGGTGGGGAGTAG
TGTTCAGGGGATTTATAGGGTGGGAGTGGTTATATAGTGACTGTGGAGGTTCTAGGCCAGGGTCT
TTGGTGTAGACAGTGCTGACAAATGTACGAGACGAGGGGAATGTGGAGTATGCAGCTGAAGGGGA
ATTGACGAGTGGTTTAGATCCGGTTGGGTTGTTTTGGGTAGTTTACAATGCTGCCAATGAACCGT
AAAGGTCATGGAGATGATCCCTTGCGCGAGTGTATAACCTAAAAATAACTAGGCCTAGTTTGATG
ACAGGTGGTTAATTGAGGTTGCACCGTGTAGTGGCTGCCAAGAGACTGGTTAGATACCCGCTTCT
TACTCGATTGTGTAGGCAAGATCTGGCTGTGGTATCTAGGTATATTGTAGTCCGTCCGAAACATC
ACAATTGTGACTGCAATCAGTCAATTGACTTAAGAGAATAAAGGT
Found at i:150 original size:15 final size:15
Alignment explanation
Indices: 91--151 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
81 GGATGAAGTA
91 AAGGAAGGAGAGAAGG
1 AAGGAAGGA-AGAAGG
**
107 AAAAAAGGAAGAAGG
1 AAGGAAGGAAGAAGG
**
122 GGGGAAGGAAGAAGG
1 AAGGAAGGAAGAAGG
137 AA-GAAGGAAGGAAGG
1 AAGGAAGGAA-GAAGG
152 GAAAGGAAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
14 7 0.19
15 22 0.61
16 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (15 bp):
AAGGAAGGAAGAAGG
Left flanking sequence: Indices 1 -- 90
GGGTTGTGGGTGGGTGGATGGGGTGGTTGGCGATGGGTTAGTGATTGGTAGATCGAGCCGCACGC
GAATGGAAGAAGGGGGGATGAAGTA
Right flanking sequence: Indices 152 -- 651
GAAAGGAAAGGGGATGAAGGGTGGGAAGAGAGTGGAAGACGGGAGAGAAGGGTGGTGGGGAGTAG
TGTTCAGGGGATTTATAGGGTGGGAGTGGTTATATAGTGACTGTGGAGGTTCTAGGCCAGGGTCT
TTGGTGTAGACAGTGCTGACAAATGTACGAGACGAGGGGAATGTGGAGTATGCAGCTGAAGGGGA
ATTGACGAGTGGTTTAGATCCGGTTGGGTTGTTTTGGGTAGTTTACAATGCTGCCAATGAACCGT
AAAGGTCATGGAGATGATCCCTTGCGCGAGTGTATAACCTAAAAATAACTAGGCCTAGTTTGATG
ACAGGTGGTTAATTGAGGTTGCACCGTGTAGTGGCTGCCAAGAGACTGGTTAGATACCCGCTTCT
TACTCGATTGTGTAGGCAAGATCTGGCTGTGGTATCTAGGTATATTGTAGTCCGTCCGAAACATC
ACAATTGTGACTGCAATCAGTCAATTGACTTAAGAGAATAAAGGT
Found at i:1226 original size:15 final size:16
Alignment explanation
Indices: 1180--1230 Score: 72
Period size: 15 Copynumber: 3.4 Consensus size: 16
1170 ATCTCATCAT
1180 CCAT-CTCTTCGCCTA
1 CCATCCTCTTCGCCTA
*
1195 CAAT-CTCTTCGCCTA
1 CCATCCTCTTCGCCTA
1210 CCATCCT-TTCGCCTA
1 CCATCCTCTTCGCCTA
1225 CCATCC
1 CCATCC
1231 CATGTAGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
15 31 0.94
16 2 0.06
ACGTcount: A:0.16, C:0.47, G:0.06, T:0.31
Consensus pattern (16 bp):
CCATCCTCTTCGCCTA
Left flanking sequence: Indices 680 -- 1179
ACGGTCTGGACAAATTGTTTTCAAGTGGCTCGTGGCATTGCGTCTCTACCCGTTTCCGTAGGTAC
TGACAATCCACTAAAACCATCCAAAAGACTCGTAGCCCACAACTATGCATTGACTCAAATATCAA
TGCCTAGGGAACGCGTATAACCCACAGCATCTCGTTGACTCTCCACATCCTCGTTTGGTAACACT
CACCCACCGACCCGCATCGTACAATTCGGGTGGTATATGCGTATACCACGCGTACTTTGTTACCC
CTTTGGGACGGCAAAGACACACCTTCAACTATTTAAAAGCCAGTTCGCTCAGAATCCCGTTTTGT
AACCACGGCTCTCCCACCCAGATCTCTGTCCGCATAACGTCTTGCAACCCCACGGGCACGACCCT
TGCAACCACCTGAATGTTCTTCCGCCATTGCATCCATTTGCCTTACCAGTTCTACTACACTTCCC
GTCTGACTCATTCATCTGGATCTCATCGTCTCCTAATCTCATCAT
Right flanking sequence: Indices 1231 -- 1730
CATGTAGCCAAACCCCTAGTTCGTTACTTCTATTCCTCCTAATCCTCTACTCACTCTATTCTCTC
CACCCTATTCTCTCCACCCTACTCTCCACCCTACTTGCTAAATTTATCACGGATCAACGCCGCCA
ACTTCGGGTAGATAATGTCCAGGGTGTTGCCCAGCACCGTGTGCAACACCCCCTTCTGGGCGTAG
TACTGCTTCAACGGAGCCAACTCGCGGTTGTACGTGTCCAACCGCTTCTGGAACACCGCCGCGGT
GTCGTCATCGCGCTTGGTAAGCGGTTCCCCGGTGATATCATCGCGAAACGGGGTCTTGGGCGGGT
TGTAGTCCAAGTTGTACACGCGGCCCAGGTCCACATGCACCCACCGGGCCTCGATCCGCTCGAGG
ATCACGTTCTGGTCCACGTCGAGCTCCACCACCATGTTCAAGTCCTTGTCGCGGGGATGCAACAG
CTCGTCCAACTGGTGGGCCTGGTTCAAGGTGCGGGGGAAGCCATC
Found at i:1305 original size:14 final size:14
Alignment explanation
Indices: 1286--1328 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
1276 TCTACTCACT
1286 CTATTCTCTCCACC
1 CTATTCTCTCCACC
1300 CTATTCTCTCCACC
1 CTATTCTCTCCACC
1314 CTA--CTCTCCACC
1 CTATTCTCTCCACC
1326 CTA
1 CTA
1329 CTTGCTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.41
14 17 0.59
ACGTcount: A:0.16, C:0.51, G:0.00, T:0.33
Consensus pattern (14 bp):
CTATTCTCTCCACC
Left flanking sequence: Indices 786 -- 1285
ACTATGCATTGACTCAAATATCAATGCCTAGGGAACGCGTATAACCCACAGCATCTCGTTGACTC
TCCACATCCTCGTTTGGTAACACTCACCCACCGACCCGCATCGTACAATTCGGGTGGTATATGCG
TATACCACGCGTACTTTGTTACCCCTTTGGGACGGCAAAGACACACCTTCAACTATTTAAAAGCC
AGTTCGCTCAGAATCCCGTTTTGTAACCACGGCTCTCCCACCCAGATCTCTGTCCGCATAACGTC
TTGCAACCCCACGGGCACGACCCTTGCAACCACCTGAATGTTCTTCCGCCATTGCATCCATTTGC
CTTACCAGTTCTACTACACTTCCCGTCTGACTCATTCATCTGGATCTCATCGTCTCCTAATCTCA
TCATCCATCTCTTCGCCTACAATCTCTTCGCCTACCATCCTTTCGCCTACCATCCCATGTAGCCA
AACCCCTAGTTCGTTACTTCTATTCCTCCTAATCCTCTACTCACT
Right flanking sequence: Indices 1329 -- 1828
CTTGCTAAATTTATCACGGATCAACGCCGCCAACTTCGGGTAGATAATGTCCAGGGTGTTGCCCA
GCACCGTGTGCAACACCCCCTTCTGGGCGTAGTACTGCTTCAACGGAGCCAACTCGCGGTTGTAC
GTGTCCAACCGCTTCTGGAACACCGCCGCGGTGTCGTCATCGCGCTTGGTAAGCGGTTCCCCGGT
GATATCATCGCGAAACGGGGTCTTGGGCGGGTTGTAGTCCAAGTTGTACACGCGGCCCAGGTCCA
CATGCACCCACCGGGCCTCGATCCGCTCGAGGATCACGTTCTGGTCCACGTCGAGCTCCACCACC
ATGTTCAAGTCCTTGTCGCGGGGATGCAACAGCTCGTCCAACTGGTGGGCCTGGTTCAAGGTGCG
GGGGAAGCCATCGAGCAAGAACAGCGCGCTGGGCGACGACCCCGCCCACCGCGGGTTGAGCAAGT
GGCCCGTGATCAACGCGATCATCGTGCGGTCCGGCACCAACTCCC
Found at i:1320 original size:12 final size:12
Alignment explanation
Indices: 1291--1330 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
1281 TCACTCTATT
1291 CTCTCCACCCTA
1 CTCTCCACCCTA
1303 TTCTCTCCACCCTA
1 --CTCTCCACCCTA
1317 CTCTCCACCCTA
1 CTCTCCACCCTA
1329 CT
1 CT
1331 TGCTAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 14 0.54
14 12 0.46
ACGTcount: A:0.15, C:0.55, G:0.00, T:0.30
Consensus pattern (12 bp):
CTCTCCACCCTA
Left flanking sequence: Indices 791 -- 1290
GCATTGACTCAAATATCAATGCCTAGGGAACGCGTATAACCCACAGCATCTCGTTGACTCTCCAC
ATCCTCGTTTGGTAACACTCACCCACCGACCCGCATCGTACAATTCGGGTGGTATATGCGTATAC
CACGCGTACTTTGTTACCCCTTTGGGACGGCAAAGACACACCTTCAACTATTTAAAAGCCAGTTC
GCTCAGAATCCCGTTTTGTAACCACGGCTCTCCCACCCAGATCTCTGTCCGCATAACGTCTTGCA
ACCCCACGGGCACGACCCTTGCAACCACCTGAATGTTCTTCCGCCATTGCATCCATTTGCCTTAC
CAGTTCTACTACACTTCCCGTCTGACTCATTCATCTGGATCTCATCGTCTCCTAATCTCATCATC
CATCTCTTCGCCTACAATCTCTTCGCCTACCATCCTTTCGCCTACCATCCCATGTAGCCAAACCC
CTAGTTCGTTACTTCTATTCCTCCTAATCCTCTACTCACTCTATT
Right flanking sequence: Indices 1331 -- 1830
TGCTAAATTTATCACGGATCAACGCCGCCAACTTCGGGTAGATAATGTCCAGGGTGTTGCCCAGC
ACCGTGTGCAACACCCCCTTCTGGGCGTAGTACTGCTTCAACGGAGCCAACTCGCGGTTGTACGT
GTCCAACCGCTTCTGGAACACCGCCGCGGTGTCGTCATCGCGCTTGGTAAGCGGTTCCCCGGTGA
TATCATCGCGAAACGGGGTCTTGGGCGGGTTGTAGTCCAAGTTGTACACGCGGCCCAGGTCCACA
TGCACCCACCGGGCCTCGATCCGCTCGAGGATCACGTTCTGGTCCACGTCGAGCTCCACCACCAT
GTTCAAGTCCTTGTCGCGGGGATGCAACAGCTCGTCCAACTGGTGGGCCTGGTTCAAGGTGCGGG
GGAAGCCATCGAGCAAGAACAGCGCGCTGGGCGACGACCCCGCCCACCGCGGGTTGAGCAAGTGG
CCCGTGATCAACGCGATCATCGTGCGGTCCGGCACCAACTCCCCG
Found at i:3119 original size:24 final size:26
Alignment explanation
Indices: 3086--3151 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 26
3076 CTAAAACTTT
*
3086 TAAATACACATCTAAGTACA-A-ATC
1 TAAATCCACATCTAAGTACACACATC
*
3110 TAAATCCACATC-AAATACACACATC
1 TAAATCCACATCTAAGTACACACATC
*
3135 --AATCCACATTTAAGTAC
1 TAAATCCACATCTAAGTAC
3152 TCATCTAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 15 0.43
24 17 0.49
25 3 0.09
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (26 bp):
TAAATCCACATCTAAGTACACACATC
Left flanking sequence: Indices 2586 -- 3085
TGTTGACAGATGTAGAGTTGAATCAAATCATGTAGTGGTTCGAGCGTTGGCGAATCTACTCTTAT
CTGAGACCCTTCTATCAATAAACTTCGATTGCATGATCATTCCAGAATAGTCGTCTGGTTCGTGG
CCTACAACCAGCGACTGCTTTGATCGCTAAACCTGTTATCAACCCTTCATTTTGATGCCTGTTTC
ACTAGACTGAAGGCTTTGGTTTGCCTTGATTCTAGCAGAATCCATCTCTACGTAGCGCAAGTGGC
CTAGCACGTCAAGTCCGAAGTAAACGATGGTCTAGTCGTAGATCCATGCACTGTTGTATCTCAAA
TCGGTACTCCACAATGGCGCAACAGCGACACTCAGCGATCCCAACACCATCCTTGGATGATCCAA
GGCTCTACGCTAGTTTCACAAACAGACAATGCCGGTAAGGCTCACAAACTTAGACACAAAACAAT
CCACAACTTCCCATCTCAGACACGAACTAAGCCATCTAAAACTTT
Right flanking sequence: Indices 3152 -- 3651
TCATCTAAGACGTCCACACCGTCGAAGGTCAAGTCTACATCAAACCGCCAACAACCTCGTAGACT
CCCGTTAACTCCACTACTCCCATTAACTTCACTACTCCACATCCACCACTCATCGTCAACTTCAC
CACTCGCATTAAATGTCTACTCCACATTCACCACTCATTAACTCCACTACTACATTTCCTCACCT
CGTCAAACCACCTCACATAAAAACTCTTCAGAATTCATTAATACATTATAATACATCACTCGTCG
TCGTCGGAGTCGATGATCCGCCGCCGCTTGCGCTCCTCCTTGTACTTGTCCGCCCCGGCCTCCTT
GACCCGCTTCAACCGCTCGGCCCGCTCGTCCTGGTCGTCGTCTTCCTCCTCTTCCTCCTCTTCCT
CCTCCTCCACCTCCTCGTCGTCGCCCGCCACGAAGTCGTCCTCCTCGTCGTACTCGTCGTCGCCG
TAGGTCCGGGCAAACCGCAGGTACAGCGGCTCCGCGGGCAGCCCG
Found at i:3237 original size:18 final size:18
Alignment explanation
Indices: 3214--3254 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
3204 AACCTCGTAG
*
3214 ACTCCCGTTAACTCCACT
1 ACTCCCATTAACTCCACT
*
3232 ACTCCCATTAACTTCACT
1 ACTCCCATTAACTCCACT
3250 ACTCC
1 ACTCC
3255 ACATCCACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.44, G:0.02, T:0.29
Consensus pattern (18 bp):
ACTCCCATTAACTCCACT
Left flanking sequence: Indices 2714 -- 3213
GGCCTACAACCAGCGACTGCTTTGATCGCTAAACCTGTTATCAACCCTTCATTTTGATGCCTGTT
TCACTAGACTGAAGGCTTTGGTTTGCCTTGATTCTAGCAGAATCCATCTCTACGTAGCGCAAGTG
GCCTAGCACGTCAAGTCCGAAGTAAACGATGGTCTAGTCGTAGATCCATGCACTGTTGTATCTCA
AATCGGTACTCCACAATGGCGCAACAGCGACACTCAGCGATCCCAACACCATCCTTGGATGATCC
AAGGCTCTACGCTAGTTTCACAAACAGACAATGCCGGTAAGGCTCACAAACTTAGACACAAAACA
ATCCACAACTTCCCATCTCAGACACGAACTAAGCCATCTAAAACTTTTAAATACACATCTAAGTA
CAAATCTAAATCCACATCAAATACACACATCAATCCACATTTAAGTACTCATCTAAGACGTCCAC
ACCGTCGAAGGTCAAGTCTACATCAAACCGCCAACAACCTCGTAG
Right flanking sequence: Indices 3255 -- 3754
ACATCCACCACTCATCGTCAACTTCACCACTCGCATTAAATGTCTACTCCACATTCACCACTCAT
TAACTCCACTACTACATTTCCTCACCTCGTCAAACCACCTCACATAAAAACTCTTCAGAATTCAT
TAATACATTATAATACATCACTCGTCGTCGTCGGAGTCGATGATCCGCCGCCGCTTGCGCTCCTC
CTTGTACTTGTCCGCCCCGGCCTCCTTGACCCGCTTCAACCGCTCGGCCCGCTCGTCCTGGTCGT
CGTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCACCTCCTCGTCGTCGCCCGCCACGAAGTCG
TCCTCCTCGTCGTACTCGTCGTCGCCGTAGGTCCGGGCAAACCGCAGGTACAGCGGCTCCGCGGG
CAGCCCGGCCCGCTCGCGGCGCCTGTCCTCCTGTGCCCGCCTTTTCAGCTCCATCTGCCTCCGGA
GCTTCAACGTTTTGCGCTCGTTCTCCTCCGCCATCCGCTGCTTGA
Found at i:3529 original size:9 final size:9
Alignment explanation
Indices: 3517--3545 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
3507 CTGGTCGTCG
3517 TCTTCCTCC
1 TCTTCCTCC
3526 TCTTCCTCC
1 TCTTCCTCC
3535 TCTTCCTCC
1 TCTTCCTCC
3544 TC
1 TC
3546 CTCCACCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (9 bp):
TCTTCCTCC
Left flanking sequence: Indices 3017 -- 3516
TCACAAACTTAGACACAAAACAATCCACAACTTCCCATCTCAGACACGAACTAAGCCATCTAAAA
CTTTTAAATACACATCTAAGTACAAATCTAAATCCACATCAAATACACACATCAATCCACATTTA
AGTACTCATCTAAGACGTCCACACCGTCGAAGGTCAAGTCTACATCAAACCGCCAACAACCTCGT
AGACTCCCGTTAACTCCACTACTCCCATTAACTTCACTACTCCACATCCACCACTCATCGTCAAC
TTCACCACTCGCATTAAATGTCTACTCCACATTCACCACTCATTAACTCCACTACTACATTTCCT
CACCTCGTCAAACCACCTCACATAAAAACTCTTCAGAATTCATTAATACATTATAATACATCACT
CGTCGTCGTCGGAGTCGATGATCCGCCGCCGCTTGCGCTCCTCCTTGTACTTGTCCGCCCCGGCC
TCCTTGACCCGCTTCAACCGCTCGGCCCGCTCGTCCTGGTCGTCG
Right flanking sequence: Indices 3546 -- 4045
CTCCACCTCCTCGTCGTCGCCCGCCACGAAGTCGTCCTCCTCGTCGTACTCGTCGTCGCCGTAGG
TCCGGGCAAACCGCAGGTACAGCGGCTCCGCGGGCAGCCCGGCCCGCTCGCGGCGCCTGTCCTCC
TGTGCCCGCCTTTTCAGCTCCATCTGCCTCCGGAGCTTCAACGTTTTGCGCTCGTTCTCCTCCGC
CATCCGCTGCTTGAGCAACGGGTCGTCATTGCTAATCGTATTGAGGATCTTGTCCTTCTTCTGGA
TGCTCTTGACCGCCTGGGTGAGCCGCCGGTGGGTGCTGGTGAGCGTCAGCGCCGGCAAGAGACTC
ACGCTCTTCAGCACCAACAGGTCCGCCTGGAGCATGTCGTGGTCGTCGTGCAGCCGCACGAGCCA
CTGGTCGGTCACGGGGATCTGCTTGAAGTCAAAGAGCTCCAGCCCGATCTTGAGCAGCACCAGCC
CGTCGTCCCACTCGACAAAGTGGGCGTTGCTCTGCTTGATGATGT
Found at i:5053 original size:40 final size:41
Alignment explanation
Indices: 4998--5093 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 41
4988 TTAATGTATC
*
4998 GTAGC-GGTGGAACAAAGGCA-GAGCTATGGAAATTGGCAAT
1 GTAGCAGG-GGAACAAAGGCATAAGCTATGGAAATTGGCAAT
* *
5038 GTAGCAGGGGAACAAAGGCATAATCTATGGAAATTGGCATT
1 GTAGCAGGGGAACAAAGGCATAAGCTATGGAAATTGGCAAT
* *
5079 GTGGCAGCGGAACAA
1 GTAGCAGGGGAACAA
5094 TGGGTTTATT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
40 17 0.35
41 32 0.65
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18
Consensus pattern (41 bp):
GTAGCAGGGGAACAAAGGCATAAGCTATGGAAATTGGCAAT
Left flanking sequence: Indices 4498 -- 4997
GTGGATGTAGAGGCGGTGGTGGAGATGACTGCTGGGGAGGCCGCAAGCGGCGCCCCCCCAGTCCC
CCCCCACCGCTTGTTCTGGTGGGTGGTGATGGGTGGTGGTGGGTAATGGTTGGTGAGAGGTGAAG
AGAAGACGTGGGATGGTGGAGGTTTTGTGGGAAGGTGGGTGAGTTAGGGGAGTAGGTGGATGGTG
GTAGAGTGGTGTGTGAGAGTGTAGCGATGGGTTAGAGATTAGAGTTCGAACGGGTACCTACGCGT
TGTACGGCCCGTTGCTTTACCTGTTTGGTTTGTTTTCGCACTGGTTACCAGATGCCTGTAGTTTG
AGAGCTTTAAAGACGCGGTAAAGTCTACTTTCTGTGCATGTTTCATGATCTAGAGTGTGGTGCTA
TGTAGCGTGATGCCAAGTAATCTTCACAGATCGCCGTAGGGCCTGTTTCAGGCTTTGTTGGTAAC
ATGTCGTAGATCGCGGTGGTACAAGTGAAACGCATTTAATGTATC
Right flanking sequence: Indices 5094 -- 5593
TGGGTTTATTGCACTCGAATCGACAACCAGTGGCGGCTCGGGCTCACGACAGGGTCGATGAGACG
AACATACAACGGATATAATGGTAGCAGAGTAGCGACGAGGGTAACCAATAGCGCGAGATCGATAA
TCTAAGATGGAATTGGCTACAATAGGTTGTTTACCACGGAAGGTAGCGTGATTGGTGGATAAGAA
GAAGTGATCGAAGCTTTGGGGTTCTGAAAGTCGATAGTAGAGCCACGAAAGCATCGACAGTAGAG
CTACGAGATAGTAGAGCTACGAAACCATTGATAGTAGAGCTAGCATCGAGCTACGACAGTAACGT
TGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCATTGAGCCTACTACACGCTCGCTA
CCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTACTCACAAATCTCTTGACGATCCT
ACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACACCA
Found at i:5376 original size:39 final size:39
Alignment explanation
Indices: 5321--5395 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
5311 TCTGAAAGTC
*
5321 GATAGTAGAGCCACGAAAGCATCGACAGTAGAGCTACGA
1 GATAGTAGAGCCACGAAACCATCGACAGTAGAGCTACGA
* * *
5360 GATAGTAGAGCTACGAAACCATTGATAGTAGAGCTA
1 GATAGTAGAGCCACGAAACCATCGACAGTAGAGCTA
5396 GCATCGAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (39 bp):
GATAGTAGAGCCACGAAACCATCGACAGTAGAGCTACGA
Left flanking sequence: Indices 4821 -- 5320
TGAGAGCTTTAAAGACGCGGTAAAGTCTACTTTCTGTGCATGTTTCATGATCTAGAGTGTGGTGC
TATGTAGCGTGATGCCAAGTAATCTTCACAGATCGCCGTAGGGCCTGTTTCAGGCTTTGTTGGTA
ACATGTCGTAGATCGCGGTGGTACAAGTGAAACGCATTTAATGTATCGTAGCGGTGGAACAAAGG
CAGAGCTATGGAAATTGGCAATGTAGCAGGGGAACAAAGGCATAATCTATGGAAATTGGCATTGT
GGCAGCGGAACAATGGGTTTATTGCACTCGAATCGACAACCAGTGGCGGCTCGGGCTCACGACAG
GGTCGATGAGACGAACATACAACGGATATAATGGTAGCAGAGTAGCGACGAGGGTAACCAATAGC
GCGAGATCGATAATCTAAGATGGAATTGGCTACAATAGGTTGTTTACCACGGAAGGTAGCGTGAT
TGGTGGATAAGAAGAAGTGATCGAAGCTTTGGGGTTCTGAAAGTC
Right flanking sequence: Indices 5396 -- 5895
GCATCGAGCTACGACAGTAACGTTGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCA
TTGAGCCTACTACACGCTCGCTACCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTA
CTCACAAATCTCTTGACGATCCTACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACA
CCACCCACCAGAACAAGCGGTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCAGCCA
TCTCCACGATCTCCACCCTGTCTACGTCCACGAAACCCGCTTCTCCACACCATAATTACAATCAC
TCATGGTCCACATTATCCCATTGTCCACAATGGTTGCCACCAACCACCCAGACCACCCGCCTCTG
TCCCAGTCTCACCCGCCTCTGTCCCAGTCTCACCCGCCTCTGTCCCAGTCTCGCCCGCGTCCATT
ATCGCCTGCGTGACCCGCCATGCCTCGCGTGTTCCACCGTAAAAT
Found at i:5799 original size:21 final size:21
Alignment explanation
Indices: 5774--5843 Score: 131
Period size: 21 Copynumber: 3.3 Consensus size: 21
5764 CCACCCAGAC
5774 CACCCGCCTCTGTCCCAGTCT
1 CACCCGCCTCTGTCCCAGTCT
5795 CACCCGCCTCTGTCCCAGTCT
1 CACCCGCCTCTGTCCCAGTCT
5816 CACCCGCCTCTGTCCCAGTCT
1 CACCCGCCTCTGTCCCAGTCT
*
5837 CGCCCGC
1 CACCCGC
5844 GTCCATTATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.09, C:0.54, G:0.16, T:0.21
Consensus pattern (21 bp):
CACCCGCCTCTGTCCCAGTCT
Left flanking sequence: Indices 5274 -- 5773
ATTGGTGGATAAGAAGAAGTGATCGAAGCTTTGGGGTTCTGAAAGTCGATAGTAGAGCCACGAAA
GCATCGACAGTAGAGCTACGAGATAGTAGAGCTACGAAACCATTGATAGTAGAGCTAGCATCGAG
CTACGACAGTAACGTTGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCATTGAGCCT
ACTACACGCTCGCTACCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTACTCACAAA
TCTCTTGACGATCCTACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACACCACCCAC
CAGAACAAGCGGTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCAGCCATCTCCACG
ATCTCCACCCTGTCTACGTCCACGAAACCCGCTTCTCCACACCATAATTACAATCACTCATGGTC
CACATTATCCCATTGTCCACAATGGTTGCCACCAACCACCCAGAC
Right flanking sequence: Indices 5844 -- 6343
GTCCATTATCGCCTGCGTGACCCGCCATGCCTCGCGTGTTCCACCGTAAAATACCCCATACAGAT
TCCATAAAGGGTCCGCCTAAGCCACCGATCCTAAGCCACCGAATCCCTGGTACCCTGGCACCCTG
AGCATACCCTGAGCACACCCACTACGCTACACCACCCACACCACCCACTCAATCCACTCCACCCA
CACCCAAACCGCCACACTCCATTGTCTGTGAAATTGCCCACAATGGCCGCGGTCTAGCCCCTGAG
ATGGAATCACGCTAATTACGCTAAATATAGCCAACAATGGCATCACCCGAAGTGACCCATTGTGC
GTCCTCACACCACCAATGGCCCACCATCACCCACCACCACCCACCACCACCCTCGCCTGACCTCT
ACCAACTACCACCCCCACCTACGCCCCTGATCGGCCACGCATCCGCGCCCTAGGCACCACCACAC
AACCATTTGCCACCACGCCAATCCACACCGCCAATCGACGCCGCC
Found at i:5943 original size:14 final size:14
Alignment explanation
Indices: 5924--5950 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5914 AAAGGGTCCG
5924 CCTAAGCCACCGAT
1 CCTAAGCCACCGAT
5938 CCTAAGCCACCGA
1 CCTAAGCCACCGA
5951 ATCCCTGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.44, G:0.15, T:0.11
Consensus pattern (14 bp):
CCTAAGCCACCGAT
Left flanking sequence: Indices 5424 -- 5923
ACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCATTGAGCCTACTACACGCTCGCTACCCAT
ACCCAACTACTGTTCAATTCCAACCCACCACCTGGTACTCACAAATCTCTTGACGATCCTACCAT
TCCCACCTTATCGGCTATCACCAACCACCAGTCAACACCACCCACCAGAACAAGCGGTGGGGGGG
TCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCAGCCATCTCCACGATCTCCACCCTGTCTACGTC
CACGAAACCCGCTTCTCCACACCATAATTACAATCACTCATGGTCCACATTATCCCATTGTCCAC
AATGGTTGCCACCAACCACCCAGACCACCCGCCTCTGTCCCAGTCTCACCCGCCTCTGTCCCAGT
CTCACCCGCCTCTGTCCCAGTCTCGCCCGCGTCCATTATCGCCTGCGTGACCCGCCATGCCTCGC
GTGTTCCACCGTAAAATACCCCATACAGATTCCATAAAGGGTCCG
Right flanking sequence: Indices 5951 -- 6450
ATCCCTGGTACCCTGGCACCCTGAGCATACCCTGAGCACACCCACTACGCTACACCACCCACACC
ACCCACTCAATCCACTCCACCCACACCCAAACCGCCACACTCCATTGTCTGTGAAATTGCCCACA
ATGGCCGCGGTCTAGCCCCTGAGATGGAATCACGCTAATTACGCTAAATATAGCCAACAATGGCA
TCACCCGAAGTGACCCATTGTGCGTCCTCACACCACCAATGGCCCACCATCACCCACCACCACCC
ACCACCACCCTCGCCTGACCTCTACCAACTACCACCCCCACCTACGCCCCTGATCGGCCACGCAT
CCGCGCCCTAGGCACCACCACACAACCATTTGCCACCACGCCAATCCACACCGCCAATCGACGCC
GCCCGAAGACGCCGCCGTCGTCCGCGCATTGTCCTCTGGCACCGCGCCATTGTTCGCCACACCCA
CGCCATTGTTCGTCGCACCTACCCTGGTACCCCTATTTAGCCTCG
Found at i:6203 original size:10 final size:10
Alignment explanation
Indices: 6188--6220 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
6178 CCACCAATGG
*
6188 CCCACCATCA
1 CCCACCACCA
6198 CCCACCACCA
1 CCCACCACCA
6208 CCCACCACCA
1 CCCACCACCA
6218 CCC
1 CCC
6221 TCGCCTGACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.27, C:0.70, G:0.00, T:0.03
Consensus pattern (10 bp):
CCCACCACCA
Left flanking sequence: Indices 5688 -- 6187
AAACCCGCTTCTCCACACCATAATTACAATCACTCATGGTCCACATTATCCCATTGTCCACAATG
GTTGCCACCAACCACCCAGACCACCCGCCTCTGTCCCAGTCTCACCCGCCTCTGTCCCAGTCTCA
CCCGCCTCTGTCCCAGTCTCGCCCGCGTCCATTATCGCCTGCGTGACCCGCCATGCCTCGCGTGT
TCCACCGTAAAATACCCCATACAGATTCCATAAAGGGTCCGCCTAAGCCACCGATCCTAAGCCAC
CGAATCCCTGGTACCCTGGCACCCTGAGCATACCCTGAGCACACCCACTACGCTACACCACCCAC
ACCACCCACTCAATCCACTCCACCCACACCCAAACCGCCACACTCCATTGTCTGTGAAATTGCCC
ACAATGGCCGCGGTCTAGCCCCTGAGATGGAATCACGCTAATTACGCTAAATATAGCCAACAATG
GCATCACCCGAAGTGACCCATTGTGCGTCCTCACACCACCAATGG
Right flanking sequence: Indices 6221 -- 6720
TCGCCTGACCTCTACCAACTACCACCCCCACCTACGCCCCTGATCGGCCACGCATCCGCGCCCTA
GGCACCACCACACAACCATTTGCCACCACGCCAATCCACACCGCCAATCGACGCCGCCCGAAGAC
GCCGCCGTCGTCCGCGCATTGTCCTCTGGCACCGCGCCATTGTTCGCCACACCCACGCCATTGTT
CGTCGCACCTACCCTGGTACCCCTATTTAGCCTCGTCACGGACTGCGCCTACCTCGACCAACCAC
CCGTGCAGCAACCGCCTGCAGACAGCCAGTGGGCAACCCGGTGCATGGGACGTTGACGGCAACGG
TGGCCGCCTTGGCAATCGCCGGCGGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTA
CCTGCGGTCTGCGCCCCGTAATGGCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCA
ACGGTTGGCAACGGTGGCCTCCGCCAGCTCCGCGACGGTTGGGCC
Found at i:6923 original size:16 final size:16
Alignment explanation
Indices: 6898--6947 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
6888 GCGTGGCGTG
*
6898 GGTGGAGGTGGGGCCA
1 GGTGGTGGTGGGGCCA
*
6914 GGTGGTGGTGGTG---
1 GGTGGTGGTGGGGCCA
6927 GGTGGTGGTGGGGCCA
1 GGTGGTGGTGGGGCCA
6943 GGTGG
1 GGTGG
6948 CGGGTGGCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 12 0.43
16 16 0.57
ACGTcount: A:0.06, C:0.08, G:0.66, T:0.20
Consensus pattern (16 bp):
GGTGGTGGTGGGGCCA
Left flanking sequence: Indices 6398 -- 6897
CACACCCACGCCATTGTTCGTCGCACCTACCCTGGTACCCCTATTTAGCCTCGTCACGGACTGCG
CCTACCTCGACCAACCACCCGTGCAGCAACCGCCTGCAGACAGCCAGTGGGCAACCCGGTGCATG
GGACGTTGACGGCAACGGTGGCCGCCTTGGCAATCGCCGGCGGGTTGTGCCACCACCTGGCCTGC
GTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCCGTAATGGCGTGCGTGCCAAGCCATCGGACC
CGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGCCTCCGCCAGCTCCGCGACGGTTGGGCCCG
CACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATTGCGGTGGGCCCGGTGGCGGCAGGG
TGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGCCCTTGCCACTGCGTCGTCAATGCA
GCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGGCGTG
Right flanking sequence: Indices 6948 -- 7447
CGGGTGGCGTGGCCAGGGTGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTT
TCTTTTGTCACCCGCCTGACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAAAAAA
ACCACCAAAAAAACCAAAAAAAACCACCAGAAAACCACCAAAAAACCACGAAAAACCACCAAAAA
ACCACAACCACACCACAACCACACCACACAACCACCCCACCTCTCTGTAACCCAACCCTAAGCAA
CCTCTTCATTCGTCCACCACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCT
AGACGTTTATTTTTACACGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTT
GGGCTGCCAACACAGTTGTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGC
TGGGTCAAGAACCTCAAGCGCGGGCTGGTGATGCTGCTGGACTCG
Found at i:6953 original size:20 final size:21
Alignment explanation
Indices: 6930--6969 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
6920 GGTGGTGGGT
*
6930 GGTGGTGGGGCCA-GGTGGCG
1 GGTGGCGGGGCCAGGGTGGCG
*
6950 GGTGGCGTGGCCAGGGTGGC
1 GGTGGCGGGGCCAGGGTGGC
6970 CGTACGGTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.05, C:0.17, G:0.62, T:0.15
Consensus pattern (21 bp):
GGTGGCGGGGCCAGGGTGGCG
Left flanking sequence: Indices 6430 -- 6929
TGGTACCCCTATTTAGCCTCGTCACGGACTGCGCCTACCTCGACCAACCACCCGTGCAGCAACCG
CCTGCAGACAGCCAGTGGGCAACCCGGTGCATGGGACGTTGACGGCAACGGTGGCCGCCTTGGCA
ATCGCCGGCGGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGC
CCCGTAATGGCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGG
TGGCCTCCGCCAGCTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACG
CCGTCGATTGCGGTGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAA
ACACAAAGCCCTTGCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTA
GAAGCGTGGCGTGGGTGGAGGTGGGGCCAGGTGGTGGTGGTGGGT
Right flanking sequence: Indices 6970 -- 7469
CGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGCCTGACCC
TACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAAAAAAACCACCAAAAAAACCAAAAAAA
ACCACCAGAAAACCACCAAAAAACCACGAAAAACCACCAAAAAACCACAACCACACCACAACCAC
ACCACACAACCACCCCACCTCTCTGTAACCCAACCCTAAGCAACCTCTTCATTCGTCCACCACCC
CACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTACACGCGC
CCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGTTGTCAT
GAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCAAGCGCG
GGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGG
Found at i:7089 original size:11 final size:11
Alignment explanation
Indices: 7073--7147 Score: 100
Period size: 11 Copynumber: 6.9 Consensus size: 11
7063 ATAACAACCA
7073 AAAAAACCACC
1 AAAAAACCACC
*
7084 AAAAAAACCA-A
1 -AAAAAACCACC
7095 AAAAAACCACC
1 AAAAAACCACC
*
7106 AGAAAACCACC
1 AAAAAACCACC
7117 AAAAAACCA-C
1 AAAAAACCACC
*
7127 GAAAAACCACC
1 AAAAAACCACC
7138 AAAAAACCAC
1 AAAAAACCAC
7148 AACCACACCA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
10 18 0.33
11 28 0.51
12 9 0.16
ACGTcount: A:0.65, C:0.32, G:0.03, T:0.00
Consensus pattern (11 bp):
AAAAAACCACC
Left flanking sequence: Indices 6573 -- 7072
TGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCCGTAATGGCGT
GCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGCCTCCGCCAG
CTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATTGCGG
TGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGCCCTT
GCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGGCGTG
GGTGGAGGTGGGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGTGGCGTGGCCA
GGGTGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGC
CTGACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCA
Right flanking sequence: Indices 7148 -- 7647
AACCACACCACAACCACACCACACAACCACCCCACCTCTCTGTAACCCAACCCTAAGCAACCTCT
TCATTCGTCCACCACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACG
TTTATTTTTACACGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCT
GCCAACACAGTTGTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGT
CAAGAACCTCAAGCGCGGGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGT
TCAGCGACCACAGCCCCACCAAGGAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCC
CAGGGGGCGCTGGACTTCAACTTCGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCG
CCCGCTTTTGCACCACAAACTGCGGCTGCTGACCAACGTCAACAC
Found at i:7132 original size:32 final size:33
Alignment explanation
Indices: 7073--7147 Score: 116
Period size: 32 Copynumber: 2.3 Consensus size: 33
7063 ATAACAACCA
7073 AAAAAACCACCAAAAAAACCAAAAAAAACCACC
1 AAAAAACCACCAAAAAAACCAAAAAAAACCACC
* **
7106 AGAAAACCACC-AAAAAACCACGAAAAACCACC
1 AAAAAACCACCAAAAAAACCAAAAAAAACCACC
7138 AAAAAACCAC
1 AAAAAACCAC
7148 AACCACACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
32 28 0.74
33 10 0.26
ACGTcount: A:0.65, C:0.32, G:0.03, T:0.00
Consensus pattern (33 bp):
AAAAAACCACCAAAAAAACCAAAAAAAACCACC
Left flanking sequence: Indices 6573 -- 7072
TGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCCGTAATGGCGT
GCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGCCTCCGCCAG
CTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATTGCGG
TGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGCCCTT
GCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGGCGTG
GGTGGAGGTGGGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGTGGCGTGGCCA
GGGTGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGC
CTGACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCA
Right flanking sequence: Indices 7148 -- 7647
AACCACACCACAACCACACCACACAACCACCCCACCTCTCTGTAACCCAACCCTAAGCAACCTCT
TCATTCGTCCACCACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACG
TTTATTTTTACACGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCT
GCCAACACAGTTGTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGT
CAAGAACCTCAAGCGCGGGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGT
TCAGCGACCACAGCCCCACCAAGGAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCC
CAGGGGGCGCTGGACTTCAACTTCGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCG
CCCGCTTTTGCACCACAAACTGCGGCTGCTGACCAACGTCAACAC
Found at i:7157 original size:11 final size:11
Alignment explanation
Indices: 7143--7170 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7133 CCACCAAAAA
7143 ACCACAACCAC
1 ACCACAACCAC
7154 ACCACAACCAC
1 ACCACAACCAC
7165 ACCACA
1 ACCACA
7171 CAACCACCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00
Consensus pattern (11 bp):
ACCACAACCAC
Left flanking sequence: Indices 6643 -- 7142
CCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGCCTCCGCCAGCTCCG
CGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATTGCGGTGGGC
CCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGCCCTTGCCAC
TGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGGCGTGGGTGG
AGGTGGGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGTGGCGTGGCCAGGGTG
GCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGCCTGAC
CCTACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAAAAAAACCACCAAAAAAACCAAAAA
AAACCACCAGAAAACCACCAAAAAACCACGAAAAACCACCAAAAA
Right flanking sequence: Indices 7171 -- 7670
CAACCACCCCACCTCTCTGTAACCCAACCCTAAGCAACCTCTTCATTCGTCCACCACCCCACCAC
CTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTACACGCGCCCTGCA
CACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGTTGTCATGAGCCA
CTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCAAGCGCGGGCTGG
TGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGTTCAGCGACCACAGCCCCACCAAG
GAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCCCAGGGGGCGCTGGACTTCAACTT
CGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCGCCCGCTTTTGCACCACAAACTGC
GGCTGCTGACCAACGTCAACACCCCCCGCGGCCGCCTGGGGTCCA
Found at i:7174 original size:13 final size:13
Alignment explanation
Indices: 7145--7182 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7135 ACCAAAAAAC
7145 CACAACCACA-C-
1 CACAACCACACCA
7156 CACAACCACACCA
1 CACAACCACACCA
*
7169 CACAACCACCCCA
1 CACAACCACACCA
7182 C
1 C
7183 CTCTCTGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.42
12 1 0.04
13 13 0.54
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (13 bp):
CACAACCACACCA
Left flanking sequence: Indices 6645 -- 7144
AAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGCCTCCGCCAGCTCCGCG
ACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATTGCGGTGGGCCC
GGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGCCCTTGCCACTG
CGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGGCGTGGGTGGAG
GTGGGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGTGGCGTGGCCAGGGTGGC
CGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGCCTGACCC
TACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAAAAAAACCACCAAAAAAACCAAAAAAA
ACCACCAGAAAACCACCAAAAAACCACGAAAAACCACCAAAAAAC
Right flanking sequence: Indices 7183 -- 7682
CTCTCTGTAACCCAACCCTAAGCAACCTCTTCATTCGTCCACCACCCCACCACCTCTCGCCATGT
CTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTACACGCGCCCTGCACACTGCACGGGT
CTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGTTGTCATGAGCCACTCGTCGAGCCC
CTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCAAGCGCGGGCTGGTGATGCTGCTGG
ACTCGGTCAACGAGATCCTGGACCCGGAGTTCAGCGACCACAGCCCCACCAAGGAACACATGGTG
CCCCCCCAGTCCATCCCCATTCCCCAGTCCCAGGGGGCGCTGGACTTCAACTTCGCCCTGCTGCC
GTTGCTGCCCCGGGCCCTGGAGTTTTTGCGCCCGCTTTTGCACCACAAACTGCGGCTGCTGACCA
ACGTCAACACCCCCCGCGGCCGCCTGGGGTCCAACACCAACTTGA
Found at i:9166 original size:12 final size:12
Alignment explanation
Indices: 9149--9175 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9139 TGCTAGGGGT
9149 GTGGTAGTGGTG
1 GTGGTAGTGGTG
9161 GTGGTAGTGGTG
1 GTGGTAGTGGTG
9173 GTG
1 GTG
9176 ATAGACGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.59, T:0.33
Consensus pattern (12 bp):
GTGGTAGTGGTG
Left flanking sequence: Indices 8649 -- 9148
CCCCCACCGGCGGGCTGGAGGCGCTGACGTTCAACGTGGCGCTGTCGGCCACCACCGCCACCACC
ACGCCCATGGAGAACGAGCACGCGCAGTTGGGCACCCCCGAGCCCAAGCTTTTGGCGCCGGACAA
GATCCACGTCGACACCGAGGCCACCCACTCGCTCACGGAGGTGGCGCTGAACGCGCTGGCCGCCA
CGTCGAAGGAGCCCATCATCGTGGTGTCCCCCGTGGACGCCGCCGCCAACGAACAAAGCTAACGA
CCCCTGTACCATAGGCATTTTGGGAACGATGTAACATTATGTATGCCACCGCCTGCCTGGGGTGG
GCGGTGTTAATAGAGATGAAACCAGTAGGCGTAGGAGTGGTGGACGGCGTGGTCTGGGTGGATGG
TTGGGTCCAGTGGACGGCTGGGTCCGGGTAGATGGCTAAGTTCGGGTGATGGCTGCTGGGGGGCC
GCAGGCGGCGCCCCCCAGACCCCCCAACGCTTTGTTGCTAGGGGT
Right flanking sequence: Indices 9176 -- 9675
ATAGACGGTCTGGTTCTTTTTAGGTGTTTGGAAGAGACAGTGGATGGGGACTTGGCTTTGGAAGC
CAGTAGAGTCTGAAAATGGTTGGAAGGTTTCTTTGGCAGGGGAGAGTTGGTATAGTGGCTTTTTT
GGAGCTTTTTAGGAGCTTGGAGCCTTGGGTTGTGATTTATTTCTACTCGATCTGGTAGGATCTTA
GTGTTTGGCGGGGTCAATTATATCGTAAAGTAATGGCAGTAATGGCACTTGGGACGAAACTCTGT
CTCTAGGTAGTCCAGTACCTTTAAACGAGGGTCACTGATAGTACCTGATCCTTGGTTATATTCTT
TTCTGGCATGGTGGGTATATGGCACTGATTGTAGACCCTGGCTGGTAGGCAGATCTCAGCACGAA
AGTATAATGGACGGGAAAAAGTCACCCAAGCCAACAATTTAGACTCCAGACAATTCAGATAGTTC
TCAAAAAGTGTTAAAAAGACAGTCACAGTGACTGCTGCTATTCAG
Found at i:10913 original size:21 final size:21
Alignment explanation
Indices: 10883--10946 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
10873 GAAAGAGTTG
*
10883 ATGGAAGGTGGGGTAGTGTTA
1 ATGGACGGTGGGGTAGTGTTA
10904 ATGGACGGTGGGGTAGTGTTA
1 ATGGACGGTGGGGTAGTGTTA
*
10925 ATGGACGGTGGAGTAGTGTTA
1 ATGGACGGTGGGGTAGTGTTA
10946 A
1 A
10947 AGGATAGTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.23, C:0.03, G:0.45, T:0.28
Consensus pattern (21 bp):
ATGGACGGTGGGGTAGTGTTA
Left flanking sequence: Indices 10383 -- 10882
GACGGTGGATGTGTTTGTGCTGGTGATTGCATGTGCTGAGGAGGTGCTGCTCTTGCGGTTGGCGC
TGTGGATGGTCAACTGTGCGCTGGTGGCGCTCGTCAACGCCGAGATCGAGGTGCGGGACGTGGTC
ACCAGTGCCCTGGCCGAGCTGCTGTTGGCGAGCTTCATGACGATGGCTGACGACGCCATTGTGGG
GTTGTGGCTCGAGGGGGATGCCGACAAGGTGGACGAGAGCTTGGATGCGTGTCTCGCCCAGGCCC
AGGCCATCAGAGCCAACATCAACCAGTACTTGTTGAACGAGGCATAGGAAGGTGAAAAATGATAG
AAAACGATGAAAGGATGTATTGGGGTTTTACGATGTGACAGTCGGTGTGGACCAGGCTGTCTTTA
ATTGTTGAATGATTCACAAAGAGTCTTTGTCTCTAATGGAGAGAGACTCATGGGCACTGTTTGAG
TGCCTATCTGTACGTATTATAATAAACCAGTAATAGAAAGAGTTG
Right flanking sequence: Indices 10947 -- 11446
AGGATAGTGAGGTTGTTTGTAGTGCTTGCCTCTTCGCTGATAGCTGGTCTTCCATTTGATTGCAC
TCTGCCAACACTTGGAAGAATACTCGAAAAATGATGTGTTCACTTAATCAAACACATAAAGCCCA
AAGGTGTTGGAGATTCTAAAGGCCCTTAAAAACTACCATGAGGTTTTTTGCTAGTCATAAGGCCT
AGTACTTCTACTACCCCATTTCTTATGACTTCTAACACTGTAAGCCTTTTAACAAATTGCAAGCC
AGTAAACAGCCGAAGAAACACCTATAGCATGCCCTTCCATCTCAAATAACACGTCCTCGGTGTCA
ATTCCCTTCCAAACACCTCGAGTGTGTCTACGTTGGGACCTTGATGGCTTGACCTTGGTGACCTG
CATATAGCCCACCACCCAGATTGCCTAAGATAAGCCAAATCCACCGTTGACAGTGCCAGGGTCAA
TTACCCTATGTCGCCCCTATTTCTCAATTGCGAATTGCGAAACGC
Found at i:12656 original size:15 final size:15
Alignment explanation
Indices: 12636--12672 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
12626 GATGAAGCGG
12636 GAGGCTAGAGACGAA
1 GAGGCTAGAGACGAA
12651 GAGGCTAGAGACGAA
1 GAGGCTAGAGACGAA
12666 GAGGCTA
1 GAGGCTA
12673 TCTCAGGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.14, G:0.41, T:0.08
Consensus pattern (15 bp):
GAGGCTAGAGACGAA
Left flanking sequence: Indices 12136 -- 12635
AGCGTGGACTATATGAACACAGTACAGCTAGTGCACAAGTTTATTGCCGAGACGTATAGTGCTGA
CCTGCTCAACATCGCCATCCAGGACGGCCCCGAGCTGGGCCAGCTGGTGCCCCATCTACACACCC
ACATCATCCCCCGGTACAAGGCCGACGGGTGGGGGGACAACATTTATAAGGACCTAGAGAGTAGT
GACATGGAGGAGCAGTACCGCGAGTTTTTCGCCCGCAAGAAGCACTGGAAGACGACCCACGACGA
CGAGCTCGATCAGCTGGACGACGAACGCCACAACCGCACAGAGGCGGAGATGGCCAAGGAGGCGA
CGTGGCTCGGAGAAAAGCTCCAGGTGTTCTTTGAGAAGCAGATGCGCCAGCGGGAACAGGACCAG
ATGGCGGTCAACTTTGATTTTGACCGGATATACAGCGACAAGAGCTACTAGAGGCTATAGATTAT
AGAGGATACGAGACAGGTAATGAATGAGAGCGAGGGATGAAGCGG
Right flanking sequence: Indices 12673 -- 13172
TCTCAGGGGTATTTAATTGGAATGTTTAGTCATGCACGTGGTGGGGTATGTGGTGGTATGTGGTG
GTATGTGGTGGTATGTGGGTGGTCTCGTCTACGCGTTTCAGGACTGAGGGACATAAACGTAAACA
GTGGGAACAGGGGTAAGGCAGGATAGGGGTCGTAAGGGGTCGAGTGGTGTTACAATTGGCCATCA
GTACCAGCCGTAATAATTGTTCAAATACCAAAGAGCACTAGGTAGCTAAAACAGTGACCACCAAA
ATAACAAACCAAACAACCAAGAAACAAACCAAGAAACAAACAAATAAACCAGCCCACCAGATATA
AACCTCATCAATTCACTCATCAACGTAAACCCACCACATCGTATGCCTCCACCACCCTATTCTCA
CCTACCACCTCTCACCCACCACCTACATAGCGTAACTTTTTCGCCGCACGCACCATGGCCGACGC
TCCCCTCGACGAGATCCAATGGAAGCTGCCCGAGTTCATCCAGGA
Found at i:12732 original size:10 final size:10
Alignment explanation
Indices: 12713--12760 Score: 80
Period size: 10 Copynumber: 4.8 Consensus size: 10
12703 CATGCACGTG
12713 GTGG-GGTAT
1 GTGGTGGTAT
12722 GTGGTGGTAT
1 GTGGTGGTAT
12732 GTGGTGGTAT
1 GTGGTGGTAT
12742 GTGGTGGTAT
1 GTGGTGGTAT
12752 GTGGGTGGT
1 GT-GGTGGT
12761 CTCGTCTACG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.11
10 27 0.73
11 6 0.16
ACGTcount: A:0.08, C:0.00, G:0.54, T:0.38
Consensus pattern (10 bp):
GTGGTGGTAT
Left flanking sequence: Indices 12213 -- 12712
CGCCATCCAGGACGGCCCCGAGCTGGGCCAGCTGGTGCCCCATCTACACACCCACATCATCCCCC
GGTACAAGGCCGACGGGTGGGGGGACAACATTTATAAGGACCTAGAGAGTAGTGACATGGAGGAG
CAGTACCGCGAGTTTTTCGCCCGCAAGAAGCACTGGAAGACGACCCACGACGACGAGCTCGATCA
GCTGGACGACGAACGCCACAACCGCACAGAGGCGGAGATGGCCAAGGAGGCGACGTGGCTCGGAG
AAAAGCTCCAGGTGTTCTTTGAGAAGCAGATGCGCCAGCGGGAACAGGACCAGATGGCGGTCAAC
TTTGATTTTGACCGGATATACAGCGACAAGAGCTACTAGAGGCTATAGATTATAGAGGATACGAG
ACAGGTAATGAATGAGAGCGAGGGATGAAGCGGGAGGCTAGAGACGAAGAGGCTAGAGACGAAGA
GGCTATCTCAGGGGTATTTAATTGGAATGTTTAGTCATGCACGTG
Right flanking sequence: Indices 12761 -- 13260
CTCGTCTACGCGTTTCAGGACTGAGGGACATAAACGTAAACAGTGGGAACAGGGGTAAGGCAGGA
TAGGGGTCGTAAGGGGTCGAGTGGTGTTACAATTGGCCATCAGTACCAGCCGTAATAATTGTTCA
AATACCAAAGAGCACTAGGTAGCTAAAACAGTGACCACCAAAATAACAAACCAAACAACCAAGAA
ACAAACCAAGAAACAAACAAATAAACCAGCCCACCAGATATAAACCTCATCAATTCACTCATCAA
CGTAAACCCACCACATCGTATGCCTCCACCACCCTATTCTCACCTACCACCTCTCACCCACCACC
TACATAGCGTAACTTTTTCGCCGCACGCACCATGGCCGACGCTCCCCTCGACGAGATCCAATGGA
AGCTGCCCGAGTTCATCCAGGAGCGGGGTCTCCACACGGGTAACGTGCTTGAGTACTTCCTGCTC
TCCCCCTTCTACGACCGGACCTCCAACAACCAGATCCTCACGATG
Found at i:12964 original size:12 final size:12
Alignment explanation
Indices: 12943--12973 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
12933 ATAACAAACC
12943 AAAC-AACCAAG
1 AAACAAACCAAG
12954 AAACAAACCAAG
1 AAACAAACCAAG
12966 AAACAAAC
1 AAACAAAC
12974 AAATAAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.68, C:0.26, G:0.06, T:0.00
Consensus pattern (12 bp):
AAACAAACCAAG
Left flanking sequence: Indices 12443 -- 12942
AGATGGCCAAGGAGGCGACGTGGCTCGGAGAAAAGCTCCAGGTGTTCTTTGAGAAGCAGATGCGC
CAGCGGGAACAGGACCAGATGGCGGTCAACTTTGATTTTGACCGGATATACAGCGACAAGAGCTA
CTAGAGGCTATAGATTATAGAGGATACGAGACAGGTAATGAATGAGAGCGAGGGATGAAGCGGGA
GGCTAGAGACGAAGAGGCTAGAGACGAAGAGGCTATCTCAGGGGTATTTAATTGGAATGTTTAGT
CATGCACGTGGTGGGGTATGTGGTGGTATGTGGTGGTATGTGGTGGTATGTGGGTGGTCTCGTCT
ACGCGTTTCAGGACTGAGGGACATAAACGTAAACAGTGGGAACAGGGGTAAGGCAGGATAGGGGT
CGTAAGGGGTCGAGTGGTGTTACAATTGGCCATCAGTACCAGCCGTAATAATTGTTCAAATACCA
AAGAGCACTAGGTAGCTAAAACAGTGACCACCAAAATAACAAACC
Right flanking sequence: Indices 12974 -- 13473
AAATAAACCAGCCCACCAGATATAAACCTCATCAATTCACTCATCAACGTAAACCCACCACATCG
TATGCCTCCACCACCCTATTCTCACCTACCACCTCTCACCCACCACCTACATAGCGTAACTTTTT
CGCCGCACGCACCATGGCCGACGCTCCCCTCGACGAGATCCAATGGAAGCTGCCCGAGTTCATCC
AGGAGCGGGGTCTCCACACGGGTAACGTGCTTGAGTACTTCCTGCTCTCCCCCTTCTACGACCGG
ACCTCCAACAACCAGATCCTCACGATGCAGTTCCAGTTCCAGCAGATCCAGATACCCCCGGGGGT
CTCGTTCCACCAGTACTTCCAGAACCGGCTCGCGGAGATGACGGGGATCGAGTTCATCGTGGCCT
ACACCCGCGAGCCCGACTTCTGGATCATCCGCAAGCAGAACCGGCTGGACCCGAAACGGGCGGAC
ACCCTCGCGGACTACTACGTGATCGGAGCCAACATCTACCAGGCC
Found at i:14092 original size:54 final size:54
Alignment explanation
Indices: 14009--14157 Score: 160
Period size: 54 Copynumber: 2.7 Consensus size: 54
13999 TTAGAGAGTA
* ** * *
14009 GCTAGCATAATAACG-AGTACGAACCAGGCTGACGTGATAGCG-AGTA-TGACCAG
1 GCTAGCATAATAA-GAAGTACGAACCAGGCTAAC-AAATAACGAAGTACTAACCAG
* *
14062 GTTAGCATAATAATGAAGTACGAACCAGGCTAACAAATAACGAAGTACTAATCAG
1 GCTAGCATAATAA-GAAGTACGAACCAGGCTAACAAATAACGAAGTACTAACCAG
* *
14117 GCTAGCATAATAACAAGTACGAACCAGGCTACCATAATAAC
1 GCTAGCATAATAAGAAGTACGAACCAGGCTAACA-AATAAC
14158 ACAACGACCA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 18 0.22
54 40 0.49
55 23 0.28
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (54 bp):
GCTAGCATAATAAGAAGTACGAACCAGGCTAACAAATAACGAAGTACTAACCAG
Left flanking sequence: Indices 13509 -- 14008
GGCACTGGTGCTCTCGATGAAAAAGACGGTGGAGTTGCTCCACGACATGACCAACTACCACATGG
GCGACGGGGGCCACTCGTACAACAACAGCGCGGTGCGAAAACCCGCTACGACGCCAGCGCTGACG
GCGTTGGCCCCGCTGAAGCTGGCCACCAGCTACTTGGCCACCCCGCTTCCCGGAGCCACCCCGGC
CGGGATCTCCACCGGGGTGGGCACCAACCCCCCGTCCACAAACAACGGGTCGATGGCGACGTCGC
TGGCGATCGAGATCACCGCGGGGGCGTTTGACAACCTCTTGGGCAACGTGATCTCGCTGCTGAAC
TTTGGAGGCGCCCTGACCACCTCCAACATCAGTTTCAACGGGCTGAGCACCAGTGCGGTGGACTT
GCCGAGCGAGGGCGATGCCACGAGCATATACCTCGACGACATTCCGTTGTACGGGAAGGGGTCGA
CGGTGGAGATGTTAGGGTTGAAGTTGAACCCGGACTTAGAGAGTA
Right flanking sequence: Indices 14158 -- 14657
ACAACGACCAGTGAGTGGGAAGGGTTGACCGAGTGAAAGTGACAGAGAACAAATGATCAACATAG
GTGACCGTGATAGAATAGCGGTCACTTAGGTGGATGAAGAGAAGCATGCCTGTTCTTTGTGGGTT
CTTTGTGCTAACCTTTTTATAGCCTTTTTAATAGACACGCTGTTTTGCCCTACCAGTTTTATACT
ATCTAGGTAGACTCTGTTCGGTAACTAATTTTACGATAATACATGGTATCGAATTGAAACCATTG
TCCTGTGCTTAGTCTTTCTCAATTTACGTCATTGACTTAAAATATGTCTTAATCTAAAGCACTGT
CTAGATGAAGCCAACAAACGCCAACTACAAATTGGAAGCCATTGGCATTAAACCTGATCACTCTG
TCGTAGACGTCTTCTCCAGAATAACCTCCTCTAGAATCACCTTCCACTACTTATCTCTTTTCTTC
GTTTCTCCTTCTCGTCACCTCTTCCTTCTTTCTCTTCCCCACGCG
Found at i:14157 original size:27 final size:27
Alignment explanation
Indices: 14009--14158 Score: 144
Period size: 27 Copynumber: 5.6 Consensus size: 27
13999 TTAGAGAGTA
*
14009 GCTAGCATAATAACGAGTACGAACCAG
1 GCTAGCATAATAACAAGTACGAACCAG
* * * * *
14036 GCT-GACGTGATAGCGAGTATG-ACCAG
1 GCTAG-CATAATAACAAGTACGAACCAG
* *
14062 GTTAGCATAATAATGAAGTACGAACCAG
1 GCTAGCATAATAA-CAAGTACGAACCAG
* * *
14090 GCTAACA-AATAACGAAGTACTAATCAG
1 GCTAGCATAATAAC-AAGTACGAACCAG
14117 GCTAGCATAATAACAAGTACGAACCAG
1 GCTAGCATAATAACAAGTACGAACCAG
*
14144 GCTACCATAATAACA
1 GCTAGCATAATAACA
14159 CAACGACCAG
Statistics
Matches: 97, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
26 13 0.13
27 68 0.70
28 16 0.16
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (27 bp):
GCTAGCATAATAACAAGTACGAACCAG
Left flanking sequence: Indices 13509 -- 14008
GGCACTGGTGCTCTCGATGAAAAAGACGGTGGAGTTGCTCCACGACATGACCAACTACCACATGG
GCGACGGGGGCCACTCGTACAACAACAGCGCGGTGCGAAAACCCGCTACGACGCCAGCGCTGACG
GCGTTGGCCCCGCTGAAGCTGGCCACCAGCTACTTGGCCACCCCGCTTCCCGGAGCCACCCCGGC
CGGGATCTCCACCGGGGTGGGCACCAACCCCCCGTCCACAAACAACGGGTCGATGGCGACGTCGC
TGGCGATCGAGATCACCGCGGGGGCGTTTGACAACCTCTTGGGCAACGTGATCTCGCTGCTGAAC
TTTGGAGGCGCCCTGACCACCTCCAACATCAGTTTCAACGGGCTGAGCACCAGTGCGGTGGACTT
GCCGAGCGAGGGCGATGCCACGAGCATATACCTCGACGACATTCCGTTGTACGGGAAGGGGTCGA
CGGTGGAGATGTTAGGGTTGAAGTTGAACCCGGACTTAGAGAGTA
Right flanking sequence: Indices 14159 -- 14658
CAACGACCAGTGAGTGGGAAGGGTTGACCGAGTGAAAGTGACAGAGAACAAATGATCAACATAGG
TGACCGTGATAGAATAGCGGTCACTTAGGTGGATGAAGAGAAGCATGCCTGTTCTTTGTGGGTTC
TTTGTGCTAACCTTTTTATAGCCTTTTTAATAGACACGCTGTTTTGCCCTACCAGTTTTATACTA
TCTAGGTAGACTCTGTTCGGTAACTAATTTTACGATAATACATGGTATCGAATTGAAACCATTGT
CCTGTGCTTAGTCTTTCTCAATTTACGTCATTGACTTAAAATATGTCTTAATCTAAAGCACTGTC
TAGATGAAGCCAACAAACGCCAACTACAAATTGGAAGCCATTGGCATTAAACCTGATCACTCTGT
CGTAGACGTCTTCTCCAGAATAACCTCCTCTAGAATCACCTTCCACTACTTATCTCTTTTCTTCG
TTTCTCCTTCTCGTCACCTCTTCCTTCTTTCTCTTCCCCACGCGA
Found at i:15296 original size:15 final size:15
Alignment explanation
Indices: 15278--15345 Score: 109
Period size: 15 Copynumber: 4.5 Consensus size: 15
15268 AAGGGCGAGG
15278 AGGGCAAGGACGCCA
1 AGGGCAAGGACGCCA
15293 AGGGCAAGGACGCCA
1 AGGGCAAGGACGCCA
*
15308 AGGGCAAGGACACCA
1 AGGGCAAGGACGCCA
* *
15323 AGGGTAAGGAGGCCA
1 AGGGCAAGGACGCCA
15338 AGGGCAAG
1 AGGGCAAG
15346 AACGAGCCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.35, C:0.22, G:0.41, T:0.01
Consensus pattern (15 bp):
AGGGCAAGGACGCCA
Left flanking sequence: Indices 14778 -- 15277
AACACCACCACCATTCCCCCGTTTCCCCGTCCCACCACCCGTCCCCTTCCCCACTGTCGCACTAA
ACCAAATTTTTCAGCCATCTCCCACCACCATGGACGCTTTTAACAACTTTACCAAGGTTCCCCTC
GCCAACGCCGGGCTGGCGGACTTGTCTGCCTGGCAGTTGACCCCCGAGCAGCAGGCGTTGGCCTC
GCAGTACACCACGTTGGCCCTGCGTGTCGACGAGCCCGACACCTTGGTGTCGTTGAACGACACCT
TGAGACTGAAGACGTTCATTGTGGGCAACGTGCCGCTGAAGGCGGACTTTGCGATGTTTGAGCGG
GTGTACGAGGTTGCTCCCAAGTGGACTGCTGCCTCGGACGTTGCCAAATACCGCCACATCTTGCG
CTGGGTCGACCTCGTGCAGAACGTGCTCGTGGAGGTGCCCACCAAGGTTGAGATCAACTACGACG
TGGAGCTCCCCAGAGAGGTGAAGGAGAAGAAGAAGAAGGGCGAGG
Right flanking sequence: Indices 15346 -- 15845
AACGAGCCCAAGGAGGCCAAGGGGGCCAAGGGGCCCCAGGGCGAGATCTCGGAGGAGGAGAAGCA
GCGCAGAGCCGAGCAGGCCAAGGCCAAGAAGGAGGCTAAGGCCAAGGCCAAGGCTGAGGCCGCGG
CCAAGACCGCAGCCGCCGCCGTGCCCCCCAACCCCGGGATGATCGACTTCCGGGTCGGGTACATC
GAGAAGGCGGTCAAGCACCCCGATGCCGACGCGCTCTACGTGCTGACCATCCAGATGGGCGACGA
GGAGGGCCCCCGGACGGTGTGCTCCGGGTTGGTGCGCTACATCCCCTTGGAGGAGATGCAGCAGC
GGTACGTGGTCACCGTGGCCAACTTGAAGCCCGTCACCATGCGTGGGATCAAGCTGTGTGCGATG
GTGTTGTGTGCGCTGACCGAGGACAAGGTGGAGTTTGTCAACCCCCCCGAGGGTTCGAAGCCCGG
CGACAAGATCTTTTTCGAGGGCTACGATGCCGAGCCCGAGAAGCA
Found at i:16723 original size:11 final size:11
Alignment explanation
Indices: 16707--16731 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16697 CCACCACATT
16707 GTCCCAACCTA
1 GTCCCAACCTA
16718 GTCCCAACCTA
1 GTCCCAACCTA
16729 GTC
1 GTC
16732 TCACTAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.44, G:0.12, T:0.20
Consensus pattern (11 bp):
GTCCCAACCTA
Left flanking sequence: Indices 16207 -- 16706
TCTGCGTCTAAGTCTGAGTCTGAGGTGATGGATGCTTCTGACGGTCGCTTCTGTGGCAGTCGCTT
CTGTGACGTTCGTTTCTGTAATGGTCGTTTTTGTTACAGTCGTGACATTCGCTCTGTGAGGGACA
TTTGCCTTTGTGTACCTCGAGGGTTTATTGTCCCTGGCACTGTATCGAATAAGCCCTATTGACCC
TGCAAGCACTCCAGACATTGTGACAGTGATAATTTATTCCACGCACTATAACCGATTTTTTGTGA
TTCTTCACACCCTCGCTTAGGCTGGGCCCATCCCCGGTTGTGTCACAAGACCGGCTCCCCAGCGT
GACCCTTGCCACAAAATACGTCAATGGGCCCACCGGTGGAAAATAATCGAGGCTGAAGTACGTTT
ATATAAGCGACAGTTTCTCAGATGACAATTCAGCTTACTCCACAATTACGCTTGTTTCACAATAC
GCATACGTCACAACGGGGCTAAACCGTAATAATAACCACCACATT
Right flanking sequence: Indices 16732 -- 17231
TCACTAAACCTTATCGTGACGTATTTATGCCTCGGGTTTATACCTAGTTGGTTAATGCTGTGCAT
AAGCCAAGAAATACCCCAGACCACCCACGCCACCCGCTTCCCGTGCATGAAAATAATACAATGAT
AATTACTTTCGATCAGTTTATTCATAACTCATACTATGTCTATTAGGTATTATTAGGGGTGCCGA
AGCACATGATGCGTGCCTAGGCACGGGGAGCAGCAGCGGCGGAGTTGCCCTCTGCGGTTCTGACC
TCGGACTTGACGTCCTGGCCCTCAGCAGCCTTCTCCTCGTCCTCGGCCTGGGCCTCGTCGGGGGC
CTGGCCCATCTGCTTCAACAAGTCACGGATGTCGATCGAGTACTTGGACTTGACTCTCTTCTTCT
CACCGCGGTAGTAGAAGTACAACGGCACGGGGATCAAGATCGCAGCGAGACACCCAACAAGCGTG
GACGCCCACTTGACCTCCAAGTTGACAAACATCTGGCGGGTGAAC
Found at i:20112 original size:14 final size:13
Alignment explanation
Indices: 20049--20127 Score: 74
Period size: 12 Copynumber: 6.2 Consensus size: 13
20039 GCAACGTGGG
20049 AGAGAAGAGGAG-A
1 AGAGAAGA-GAGCA
* *
20062 GGAGAGGAGAGCA
1 AGAGAAGAGAGCA
* *
20075 ATAGGA-AGAGCA
1 AGAGAAGAGAGCA
*
20087 AGAGGA-AGAGCA
1 AGAGAAGAGAGCA
20099 AGAGAACGAGAGCA
1 AGAGAA-GAGAGCA
20113 AGAGAAGAGAGCA
1 AGAGAAGAGAGCA
20126 AG
1 AG
20128 GGATCACAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
12 25 0.45
13 18 0.33
14 12 0.22
ACGTcount: A:0.49, C:0.08, G:0.42, T:0.01
Consensus pattern (13 bp):
AGAGAAGAGAGCA
Left flanking sequence: Indices 19549 -- 20048
GTACCTGTGCCCAACAGACGCACCCGGGGTTTCCGGATTCAGTGCTATATAAAGCTGGGGCACGA
GACCTAGGGGTTGCCGAAACTGCGTGTGGGTGGTGCAGCGAATTACACTCGCCGGCGAATGGTCG
GCAAACCCGTAGGCTGGGGTGGTTAGTAGCGGGGACCGGAAAAAACCGTTGGCGATCCAGAGTGC
ATGGAGTAGAGACGGGTCAGGAGTGGGTGGTTGGAGAGGTAGGCGGTGGTGGCTGAGCCTGGTGA
TGGGTCGGGACGAGCTACCGGGTGTTTATAAGCGGGATTCGTAAGCGGTAAACGTGTCCGCGAAC
GGCGATGGCGCCACTGGCTGTTGCGTGTAGCCCGTTTTGGGCGAGGCACGGCGGATAATAAGATC
GAATGACAGGGCCAAGCGACCAGCAAGTGAATGTGGGTGAAAAGAAACCGGCGTGCATGTGAGGT
GGACAGTGTGGTTGCGTTGGTTTGTGACACCAGGGGCAACGTGGG
Right flanking sequence: Indices 20128 -- 20627
GGATCACAATTAAGGTTATCACCCACTCCACAAAGACACCAGAGGGTGGTGTCATGACGACAACC
GGTGCCATGATCGCCAACCGTTTTTTCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCG
CCTGGTCATGTGTCTGGACCAGCGTGAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTG
GGCATGCTACGACTCACCGCTAACCGTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGA
TCCAGCTGGACCCTTTTATGAGCCAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACAC
ATCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGACCACCACTACCACTCCTACCACTCTT
ACCACTCTTACACCCCTACTAAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCC
AGGTCACCGATCTTGATCACCGATCACCTATCACCTTCTTCCCTC
Found at i:20201 original size:18 final size:19
Alignment explanation
Indices: 20175--20212 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
20165 ACCAGAGGGT
*
20175 GGTGTCATGA-CGACAACC
1 GGTGCCATGATCGACAACC
*
20193 GGTGCCATGATCGCCAACC
1 GGTGCCATGATCGACAACC
20212 G
1 G
20213 TTTTTTCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.16
Consensus pattern (19 bp):
GGTGCCATGATCGACAACC
Left flanking sequence: Indices 19675 -- 20174
GTCGGCAAACCCGTAGGCTGGGGTGGTTAGTAGCGGGGACCGGAAAAAACCGTTGGCGATCCAGA
GTGCATGGAGTAGAGACGGGTCAGGAGTGGGTGGTTGGAGAGGTAGGCGGTGGTGGCTGAGCCTG
GTGATGGGTCGGGACGAGCTACCGGGTGTTTATAAGCGGGATTCGTAAGCGGTAAACGTGTCCGC
GAACGGCGATGGCGCCACTGGCTGTTGCGTGTAGCCCGTTTTGGGCGAGGCACGGCGGATAATAA
GATCGAATGACAGGGCCAAGCGACCAGCAAGTGAATGTGGGTGAAAAGAAACCGGCGTGCATGTG
AGGTGGACAGTGTGGTTGCGTTGGTTTGTGACACCAGGGGCAACGTGGGAGAGAAGAGGAGAGGA
GAGGAGAGCAATAGGAAGAGCAAGAGGAAGAGCAAGAGAACGAGAGCAAGAGAAGAGAGCAAGGG
ATCACAATTAAGGTTATCACCCACTCCACAAAGACACCAGAGGGT
Right flanking sequence: Indices 20213 -- 20712
TTTTTTCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCGCCTGGTCATGTGTCTGGACC
AGCGTGAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTGGGCATGCTACGACTCACCGC
TAACCGTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGATCCAGCTGGACCCTTTTATG
AGCCAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACATCCAAGTAGACCACCCCTA
GTAGACCACCCATAATAGACCACCACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACT
AAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCCAGGTCACCGATCTTGATCAC
CGATCACCTATCACCTTCTTCCCTCCGATCACCTATCACCTTCTTCCTCCGATCACCTATCACCT
GTCTTCCCCAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGC
Found at i:20477 original size:14 final size:14
Alignment explanation
Indices: 20458--20496 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
20448 AACACATCCA
*
20458 AGTAGACCACCCCT
1 AGTAGACCACCCAT
20472 AGTAGACCACCCAT
1 AGTAGACCACCCAT
*
20486 AATAGACCACC
1 AGTAGACCACC
20497 ACTACCACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.36, C:0.38, G:0.13, T:0.13
Consensus pattern (14 bp):
AGTAGACCACCCAT
Left flanking sequence: Indices 19958 -- 20457
CCAGCAAGTGAATGTGGGTGAAAAGAAACCGGCGTGCATGTGAGGTGGACAGTGTGGTTGCGTTG
GTTTGTGACACCAGGGGCAACGTGGGAGAGAAGAGGAGAGGAGAGGAGAGCAATAGGAAGAGCAA
GAGGAAGAGCAAGAGAACGAGAGCAAGAGAAGAGAGCAAGGGATCACAATTAAGGTTATCACCCA
CTCCACAAAGACACCAGAGGGTGGTGTCATGACGACAACCGGTGCCATGATCGCCAACCGTTTTT
TCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCGCCTGGTCATGTGTCTGGACCAGCGT
GAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTGGGCATGCTACGACTCACCGCTAACC
GTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGATCCAGCTGGACCCTTTTATGAGCCA
ACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACATCCA
Right flanking sequence: Indices 20497 -- 20996
ACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACTAAACCACCCCTAATCACCCCCTCT
ACCACTCCATGCCCCTATCCCAGGTCACCGATCTTGATCACCGATCACCTATCACCTTCTTCCCT
CCGATCACCTATCACCTTCTTCCTCCGATCACCTATCACCTGTCTTCCCCAGTTCCACCATTCCC
TCATTCCTCCATTCTTCTCGCCCGCCACGGTGCTTCCCCACAACCCTACACTCCCCATAGCCTGA
TTACACCGCCCTCCACCGCCTTGGCCCCGCAACCGGCCAGCCATAACTCCGATCGTACCTCGTAT
AACCCAACGCGAATCAAATCCCGGGAGGACCACCAGACCACACAAGGCCAGACACACAAAACCAC
CACACCACGCCTACCTCTTCCCATTCACCACCCCTCCCCTCCACCCTCCACCGCTCCACATCCCA
CCCCACCCAACACCACCCACACCACCCACACTCATCCCACCCCAC
Found at i:20525 original size:9 final size:9
Alignment explanation
Indices: 20499--20528 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
20489 AGACCACCAC
*
20499 TACCACTCC
1 TACCACTCT
20508 TACCACTCT
1 TACCACTCT
20517 TACCACTCT
1 TACCACTCT
20526 TAC
1 TAC
20529 ACCCCTACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.23, C:0.47, G:0.00, T:0.30
Consensus pattern (9 bp):
TACCACTCT
Left flanking sequence: Indices 19999 -- 20498
GAGGTGGACAGTGTGGTTGCGTTGGTTTGTGACACCAGGGGCAACGTGGGAGAGAAGAGGAGAGG
AGAGGAGAGCAATAGGAAGAGCAAGAGGAAGAGCAAGAGAACGAGAGCAAGAGAAGAGAGCAAGG
GATCACAATTAAGGTTATCACCCACTCCACAAAGACACCAGAGGGTGGTGTCATGACGACAACCG
GTGCCATGATCGCCAACCGTTTTTTCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCGC
CTGGTCATGTGTCTGGACCAGCGTGAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTGG
GCATGCTACGACTCACCGCTAACCGTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGAT
CCAGCTGGACCCTTTTATGAGCCAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACA
TCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGACCACCAC
Right flanking sequence: Indices 20529 -- 21028
ACCCCTACTAAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCCAGGTCACCGAT
CTTGATCACCGATCACCTATCACCTTCTTCCCTCCGATCACCTATCACCTTCTTCCTCCGATCAC
CTATCACCTGTCTTCCCCAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGCCCGCCACGGTG
CTTCCCCACAACCCTACACTCCCCATAGCCTGATTACACCGCCCTCCACCGCCTTGGCCCCGCAA
CCGGCCAGCCATAACTCCGATCGTACCTCGTATAACCCAACGCGAATCAAATCCCGGGAGGACCA
CCAGACCACACAAGGCCAGACACACAAAACCACCACACCACGCCTACCTCTTCCCATTCACCACC
CCTCCCCTCCACCCTCCACCGCTCCACATCCCACCCCACCCAACACCACCCACACCACCCACACT
CATCCCACCCCACACTGACTCAGTTGACTCAGTTGCGAGCCCGCA
Found at i:20631 original size:25 final size:25
Alignment explanation
Indices: 20602--20675 Score: 132
Period size: 25 Copynumber: 3.0 Consensus size: 25
20592 ATCTTGATCA
20602 CCGATCACCTATCACCTTCTTCCCT
1 CCGATCACCTATCACCTTCTTCCCT
20627 CCGATCACCTATCACCTTCTT-CCT
1 CCGATCACCTATCACCTTCTTCCCT
20651 CCGATCACCTATCACCTGTCTTCCC
1 CCGATCACCTATCACCT-TCTTCCC
20676 CAGTTCCACC
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
24 20 0.43
25 25 0.53
26 2 0.04
ACGTcount: A:0.16, C:0.47, G:0.05, T:0.31
Consensus pattern (25 bp):
CCGATCACCTATCACCTTCTTCCCT
Left flanking sequence: Indices 20102 -- 20601
GAACGAGAGCAAGAGAAGAGAGCAAGGGATCACAATTAAGGTTATCACCCACTCCACAAAGACAC
CAGAGGGTGGTGTCATGACGACAACCGGTGCCATGATCGCCAACCGTTTTTTCTCTGTGTATAGC
GAGTTACACCTAATCCGAGCCATCCGCCTGGTCATGTGTCTGGACCAGCGTGAACCAATCACCAC
CCCCCGCGGTCCGCCTAGCCAGCCTGGGCATGCTACGACTCACCGCTAACCGTGTCTACTTACGG
AAGTCACCTGATCACACCGCGACCGATCCAGCTGGACCCTTTTATGAGCCAACCTAGACCAATCA
CCACCGCGCAAGCTTCCACCAAACACATCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGA
CCACCACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACTAAACCACCCCTAATCACCC
CCTCTACCACTCCATGCCCCTATCCCAGGTCACCGATCTTGATCA
Right flanking sequence: Indices 20676 -- 21175
CAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGCCCGCCACGGTGCTTCCCCACAACCCTAC
ACTCCCCATAGCCTGATTACACCGCCCTCCACCGCCTTGGCCCCGCAACCGGCCAGCCATAACTC
CGATCGTACCTCGTATAACCCAACGCGAATCAAATCCCGGGAGGACCACCAGACCACACAAGGCC
AGACACACAAAACCACCACACCACGCCTACCTCTTCCCATTCACCACCCCTCCCCTCCACCCTCC
ACCGCTCCACATCCCACCCCACCCAACACCACCCACACCACCCACACTCATCCCACCCCACACTG
ACTCAGTTGACTCAGTTGCGAGCCCGCACCCCACCAGCCCACCAATCACAGCACGCCAAGTCTCG
ATCGGCCCATCCGCCCCCCACCCGGGTTCGTCCGCCACCACCACACGTCACCACCCGCCCCACAA
CACACCCCCCCGTCGAGCCCACCCATCCAGCCCACCCAATCGCCC
Found at i:20973 original size:9 final size:9
Alignment explanation
Indices: 20948--20996 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
20938 CGCTCCACAT
*
20948 CCCACCCCA
1 CCCACACCA
20957 CCCAACACCA
1 CCC-ACACCA
20967 CCCACACCA
1 CCCACACCA
20976 CCCACACTCA
1 CCCACAC-CA
*
20986 TCCCACCCCA
1 -CCCACACCA
20996 C
1 C
20997 ACTGACTCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 17 0.49
10 12 0.34
11 6 0.17
ACGTcount: A:0.29, C:0.67, G:0.00, T:0.04
Consensus pattern (9 bp):
CCCACACCA
Left flanking sequence: Indices 20448 -- 20947
AACACATCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGACCACCACTACCACTCCTACCA
CTCTTACCACTCTTACACCCCTACTAAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCT
ATCCCAGGTCACCGATCTTGATCACCGATCACCTATCACCTTCTTCCCTCCGATCACCTATCACC
TTCTTCCTCCGATCACCTATCACCTGTCTTCCCCAGTTCCACCATTCCCTCATTCCTCCATTCTT
CTCGCCCGCCACGGTGCTTCCCCACAACCCTACACTCCCCATAGCCTGATTACACCGCCCTCCAC
CGCCTTGGCCCCGCAACCGGCCAGCCATAACTCCGATCGTACCTCGTATAACCCAACGCGAATCA
AATCCCGGGAGGACCACCAGACCACACAAGGCCAGACACACAAAACCACCACACCACGCCTACCT
CTTCCCATTCACCACCCCTCCCCTCCACCCTCCACCGCTCCACAT
Right flanking sequence: Indices 20997 -- 21496
ACTGACTCAGTTGACTCAGTTGCGAGCCCGCACCCCACCAGCCCACCAATCACAGCACGCCAAGT
CTCGATCGGCCCATCCGCCCCCCACCCGGGTTCGTCCGCCACCACCACACGTCACCACCCGCCCC
ACAACACACCCCCCCGTCGAGCCCACCCATCCAGCCCACCCAATCGCCCCACTATTTCTCGGCGT
TACCCCACACTGCGTTACGTAAGCGAACTCCGAAACGCGCCCGAACACTATAAAAAGGATCGCGC
CATATCCCTTGCCACCAAAATGTCAACCACTTTTGGCAACGACGAGCACTTGCCGCGGTTGCCGG
TGCCGCTGTTGCAGCTGACGGCGCGCCAGTTGCTCGGTGCGCTCAAACCGTTGCTTCTGGGCGAG
GAGTTCATGGACGTGTACGCAGAGCTGGCCCAGTTCGAGGCGGACCCGACGGTCCAGTTGATCCA
GCGCCACCTCCAGGCGGCTGCGGACCACCCCAGCATCACGTGCTA
Found at i:24055 original size:15 final size:15
Alignment explanation
Indices: 24035--24078 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
24025 TATTACGAAT
24035 GAATGGAAGGAAAGA
1 GAATGGAAGGAAAGA
24050 GAATGGAAGGAAAGA
1 GAATGGAAGGAAAGA
* *
24065 GGATGGAATGAAAG
1 GAATGGAAGGAAAG
24079 GAGGTGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.50, C:0.00, G:0.41, T:0.09
Consensus pattern (15 bp):
GAATGGAAGGAAAGA
Left flanking sequence: Indices 23535 -- 24034
GGCCGCCTGGACTCGCTCGAGCTGATCTCGTCCGAGGAGGACTACGACATCCTCGGAGGGTACGG
CTACTTTGACATCGGCGAGGTTGACGTGCGGCTGGAGGAGATCTCGCGGGCCGAGCTGTACTTGA
ACCTGCGCACCACCTCGCAGTTCCAGCTGCGGTACCAGTCGCGCCACCAGCTGCGGCGCAACCTG
AACCTGGACTTGCCGCGGTTGGCGCTGGACATCAAGGACAAGATGCTGCTTTCGGAGAAGATCCG
CGACCGGTTGCGGATGGACCTGGACGACAACTTGATGCCGCCGCGCGGGCTGAGCCTGCTGCCCG
AGCGGCGGTCGCCGCTGTTGCCGCGCGAGTTGTCGCCGCTGATGAAGGCGCGGGTGGGCCGTGCG
TTGGACATGTCGCACTATACGTAGGGGGGTGGCGTAGTGGCGTAGTGGCAGCGAAGTAGCGATAG
CGACGTAGCTACAGCGACCATAGCGGTTATTTATTTATTACGAAT
Right flanking sequence: Indices 24079 -- 24578
GAGGTGATAGACTGGAAGTAATAGAGGATACAAGGAAGAAATAGAGGATGGAATGAAGAAATAGA
GGATAGAATGAAGGTGTTAGAGAATAGAATGAACCACCTTAGAGGATAATGAAAGAAATAGAAGT
GATAGAATGAAGGGAATAGAGTATGGAATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGAAAT
AAGGGTGATAGAATGAAAGATATAGAATGAAAGAAATAAAGGTGATAGAATAGAGGTGATAGAAA
TAGAGGATAGAAAGAAAGGAATGGAGGATAGGATGAAAAAATTAGAGGATAGAATGAAGGTATTG
GAGGTTAGAATGGAAGTAATAGAGGTGATCGAATGAAGGAAGGGGAAAGAATGAAGGAAGTAGAG
GATAGAATAAAAAATGGAGGTTTTAAAATAGAAGAAATAATGGTGATAGAACGAAAGATATAGAG
GATAGAATGAAAGAGATAGAGGACAAAATCAAAGAAATAGAGGAC
Found at i:24121 original size:20 final size:20
Alignment explanation
Indices: 24092--24148 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
24082 GTGATAGACT
*
24092 GGAAGTAATAGAGGATACAA
1 GGAAGAAATAGAGGATACAA
**
24112 GGAAGAAATAGAGGATGGAA
1 GGAAGAAATAGAGGATACAA
*
24132 TGAAGAAATAGAGGATA
1 GGAAGAAATAGAGGATA
24149 GAATGAAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.51, C:0.02, G:0.33, T:0.14
Consensus pattern (20 bp):
GGAAGAAATAGAGGATACAA
Left flanking sequence: Indices 23592 -- 24091
GGGTACGGCTACTTTGACATCGGCGAGGTTGACGTGCGGCTGGAGGAGATCTCGCGGGCCGAGCT
GTACTTGAACCTGCGCACCACCTCGCAGTTCCAGCTGCGGTACCAGTCGCGCCACCAGCTGCGGC
GCAACCTGAACCTGGACTTGCCGCGGTTGGCGCTGGACATCAAGGACAAGATGCTGCTTTCGGAG
AAGATCCGCGACCGGTTGCGGATGGACCTGGACGACAACTTGATGCCGCCGCGCGGGCTGAGCCT
GCTGCCCGAGCGGCGGTCGCCGCTGTTGCCGCGCGAGTTGTCGCCGCTGATGAAGGCGCGGGTGG
GCCGTGCGTTGGACATGTCGCACTATACGTAGGGGGGTGGCGTAGTGGCGTAGTGGCAGCGAAGT
AGCGATAGCGACGTAGCTACAGCGACCATAGCGGTTATTTATTTATTACGAATGAATGGAAGGAA
AGAGAATGGAAGGAAAGAGGATGGAATGAAAGGAGGTGATAGACT
Right flanking sequence: Indices 24149 -- 24648
GAATGAAGGTGTTAGAGAATAGAATGAACCACCTTAGAGGATAATGAAAGAAATAGAAGTGATAG
AATGAAGGGAATAGAGTATGGAATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGAAATAAGGG
TGATAGAATGAAAGATATAGAATGAAAGAAATAAAGGTGATAGAATAGAGGTGATAGAAATAGAG
GATAGAAAGAAAGGAATGGAGGATAGGATGAAAAAATTAGAGGATAGAATGAAGGTATTGGAGGT
TAGAATGGAAGTAATAGAGGTGATCGAATGAAGGAAGGGGAAAGAATGAAGGAAGTAGAGGATAG
AATAAAAAATGGAGGTTTTAAAATAGAAGAAATAATGGTGATAGAACGAAAGATATAGAGGATAG
AATGAAAGAGATAGAGGACAAAATCAAAGAAATAGAGGACAGAATGAATGAAATGGAATCAAGCA
ATAGAGGATAGGATGACAATATGAAATAAATAGAGGATACAATGA
Found at i:24217 original size:23 final size:21
Alignment explanation
Indices: 24191--24244 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 21
24181 CTTAGAGGAT
24191 AATGAAAGAAATAGAAGTGATAG
1 AATGAAAGAAATAG-AGT-ATAG
* * *
24214 AATGAAGGGAATAGAGTATGG
1 AATGAAAGAAATAGAGTATAG
*
24235 AATGGAAGAA
1 AATGAAAGAA
24245 TGAAAGAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 10 0.40
22 3 0.12
23 12 0.48
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (21 bp):
AATGAAAGAAATAGAGTATAG
Left flanking sequence: Indices 23691 -- 24190
CTGCGGTACCAGTCGCGCCACCAGCTGCGGCGCAACCTGAACCTGGACTTGCCGCGGTTGGCGCT
GGACATCAAGGACAAGATGCTGCTTTCGGAGAAGATCCGCGACCGGTTGCGGATGGACCTGGACG
ACAACTTGATGCCGCCGCGCGGGCTGAGCCTGCTGCCCGAGCGGCGGTCGCCGCTGTTGCCGCGC
GAGTTGTCGCCGCTGATGAAGGCGCGGGTGGGCCGTGCGTTGGACATGTCGCACTATACGTAGGG
GGGTGGCGTAGTGGCGTAGTGGCAGCGAAGTAGCGATAGCGACGTAGCTACAGCGACCATAGCGG
TTATTTATTTATTACGAATGAATGGAAGGAAAGAGAATGGAAGGAAAGAGGATGGAATGAAAGGA
GGTGATAGACTGGAAGTAATAGAGGATACAAGGAAGAAATAGAGGATGGAATGAAGAAATAGAGG
ATAGAATGAAGGTGTTAGAGAATAGAATGAACCACCTTAGAGGAT
Right flanking sequence: Indices 24245 -- 24744
TGAAAGAAATGGAGGTGAAAGAATGAAATAAGGGTGATAGAATGAAAGATATAGAATGAAAGAAA
TAAAGGTGATAGAATAGAGGTGATAGAAATAGAGGATAGAAAGAAAGGAATGGAGGATAGGATGA
AAAAATTAGAGGATAGAATGAAGGTATTGGAGGTTAGAATGGAAGTAATAGAGGTGATCGAATGA
AGGAAGGGGAAAGAATGAAGGAAGTAGAGGATAGAATAAAAAATGGAGGTTTTAAAATAGAAGAA
ATAATGGTGATAGAACGAAAGATATAGAGGATAGAATGAAAGAGATAGAGGACAAAATCAAAGAA
ATAGAGGACAGAATGAATGAAATGGAATCAAGCAATAGAGGATAGGATGACAATATGAAATAAAT
AGAGGATACAATGAGAGAAATAGAGGATAGAACGAAAGAAATAGAGGATAGAACTAAAGAATTAG
AGGATAAAATGAAGGTCTTAGAGGATAGAGTGAAAGAAATGAAGA
Found at i:24300 original size:14 final size:14
Alignment explanation
Indices: 24281--24307 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24271 AATAAGGGTG
24281 ATAGAATGAAAGAT
1 ATAGAATGAAAGAT
24295 ATAGAATGAAAGA
1 ATAGAATGAAAGA
24308 AATAAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.22, T:0.19
Consensus pattern (14 bp):
ATAGAATGAAAGAT
Left flanking sequence: Indices 23781 -- 24280
TCGGAGAAGATCCGCGACCGGTTGCGGATGGACCTGGACGACAACTTGATGCCGCCGCGCGGGCT
GAGCCTGCTGCCCGAGCGGCGGTCGCCGCTGTTGCCGCGCGAGTTGTCGCCGCTGATGAAGGCGC
GGGTGGGCCGTGCGTTGGACATGTCGCACTATACGTAGGGGGGTGGCGTAGTGGCGTAGTGGCAG
CGAAGTAGCGATAGCGACGTAGCTACAGCGACCATAGCGGTTATTTATTTATTACGAATGAATGG
AAGGAAAGAGAATGGAAGGAAAGAGGATGGAATGAAAGGAGGTGATAGACTGGAAGTAATAGAGG
ATACAAGGAAGAAATAGAGGATGGAATGAAGAAATAGAGGATAGAATGAAGGTGTTAGAGAATAG
AATGAACCACCTTAGAGGATAATGAAAGAAATAGAAGTGATAGAATGAAGGGAATAGAGTATGGA
ATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGAAATAAGGGTG
Right flanking sequence: Indices 24308 -- 24807
AATAAAGGTGATAGAATAGAGGTGATAGAAATAGAGGATAGAAAGAAAGGAATGGAGGATAGGAT
GAAAAAATTAGAGGATAGAATGAAGGTATTGGAGGTTAGAATGGAAGTAATAGAGGTGATCGAAT
GAAGGAAGGGGAAAGAATGAAGGAAGTAGAGGATAGAATAAAAAATGGAGGTTTTAAAATAGAAG
AAATAATGGTGATAGAACGAAAGATATAGAGGATAGAATGAAAGAGATAGAGGACAAAATCAAAG
AAATAGAGGACAGAATGAATGAAATGGAATCAAGCAATAGAGGATAGGATGACAATATGAAATAA
ATAGAGGATACAATGAGAGAAATAGAGGATAGAACGAAAGAAATAGAGGATAGAACTAAAGAATT
AGAGGATAAAATGAAGGTCTTAGAGGATAGAGTGAAAGAAATGAAGATGATAGCATGATGGTTTC
TGACGTGAGAGTGGCTATCCGAGGAATTGAGAATCCACTGTGGAA
Found at i:24351 original size:13 final size:15
Alignment explanation
Indices: 24305--24344 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
24295 ATAGAATGAA
*
24305 AGAAATAAAGGTGAT
1 AGAAATAGAGGTGAT
24320 AG-AATAGAGGTGAT
1 AGAAATAGAGGTGAT
24334 AGAAATAGAGG
1 AGAAATAGAGG
24345 ATAGAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (15 bp):
AGAAATAGAGGTGAT
Left flanking sequence: Indices 23805 -- 24304
CGGATGGACCTGGACGACAACTTGATGCCGCCGCGCGGGCTGAGCCTGCTGCCCGAGCGGCGGTC
GCCGCTGTTGCCGCGCGAGTTGTCGCCGCTGATGAAGGCGCGGGTGGGCCGTGCGTTGGACATGT
CGCACTATACGTAGGGGGGTGGCGTAGTGGCGTAGTGGCAGCGAAGTAGCGATAGCGACGTAGCT
ACAGCGACCATAGCGGTTATTTATTTATTACGAATGAATGGAAGGAAAGAGAATGGAAGGAAAGA
GGATGGAATGAAAGGAGGTGATAGACTGGAAGTAATAGAGGATACAAGGAAGAAATAGAGGATGG
AATGAAGAAATAGAGGATAGAATGAAGGTGTTAGAGAATAGAATGAACCACCTTAGAGGATAATG
AAAGAAATAGAAGTGATAGAATGAAGGGAATAGAGTATGGAATGGAAGAATGAAAGAAATGGAGG
TGAAAGAATGAAATAAGGGTGATAGAATGAAAGATATAGAATGAA
Right flanking sequence: Indices 24345 -- 24844
ATAGAAAGAAAGGAATGGAGGATAGGATGAAAAAATTAGAGGATAGAATGAAGGTATTGGAGGTT
AGAATGGAAGTAATAGAGGTGATCGAATGAAGGAAGGGGAAAGAATGAAGGAAGTAGAGGATAGA
ATAAAAAATGGAGGTTTTAAAATAGAAGAAATAATGGTGATAGAACGAAAGATATAGAGGATAGA
ATGAAAGAGATAGAGGACAAAATCAAAGAAATAGAGGACAGAATGAATGAAATGGAATCAAGCAA
TAGAGGATAGGATGACAATATGAAATAAATAGAGGATACAATGAGAGAAATAGAGGATAGAACGA
AAGAAATAGAGGATAGAACTAAAGAATTAGAGGATAAAATGAAGGTCTTAGAGGATAGAGTGAAA
GAAATGAAGATGATAGCATGATGGTTTCTGACGTGAGAGTGGCTATCCGAGGAATTGAGAATCCA
CTGTGGAAGTGTGACTATTCTCGCAAAGGTACGGTGTGTTTCTCT
Found at i:24407 original size:21 final size:20
Alignment explanation
Indices: 24341--24415 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
24331 GATAGAAATA
* *
24341 GAGGATAGAAAGAAAGGAATG
1 GAGGATAGAATG-AAGGATTG
* ** *
24362 GAGGATAGGATGAAAAAATTA
1 GAGGATAGAATG-AAGGATTG
24383 GAGGATAGAATGAAGGTATTG
1 GAGGATAGAATGAAGG-ATTG
*
24404 GAGGTTAGAATG
1 GAGGATAGAATG
24416 GAAGTAATAG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 2 0.05
21 40 0.95
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.19
Consensus pattern (20 bp):
GAGGATAGAATGAAGGATTG
Left flanking sequence: Indices 23841 -- 24340
GGGCTGAGCCTGCTGCCCGAGCGGCGGTCGCCGCTGTTGCCGCGCGAGTTGTCGCCGCTGATGAA
GGCGCGGGTGGGCCGTGCGTTGGACATGTCGCACTATACGTAGGGGGGTGGCGTAGTGGCGTAGT
GGCAGCGAAGTAGCGATAGCGACGTAGCTACAGCGACCATAGCGGTTATTTATTTATTACGAATG
AATGGAAGGAAAGAGAATGGAAGGAAAGAGGATGGAATGAAAGGAGGTGATAGACTGGAAGTAAT
AGAGGATACAAGGAAGAAATAGAGGATGGAATGAAGAAATAGAGGATAGAATGAAGGTGTTAGAG
AATAGAATGAACCACCTTAGAGGATAATGAAAGAAATAGAAGTGATAGAATGAAGGGAATAGAGT
ATGGAATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGAAATAAGGGTGATAGAATGAAAGATA
TAGAATGAAAGAAATAAAGGTGATAGAATAGAGGTGATAGAAATA
Right flanking sequence: Indices 24416 -- 24915
GAAGTAATAGAGGTGATCGAATGAAGGAAGGGGAAAGAATGAAGGAAGTAGAGGATAGAATAAAA
AATGGAGGTTTTAAAATAGAAGAAATAATGGTGATAGAACGAAAGATATAGAGGATAGAATGAAA
GAGATAGAGGACAAAATCAAAGAAATAGAGGACAGAATGAATGAAATGGAATCAAGCAATAGAGG
ATAGGATGACAATATGAAATAAATAGAGGATACAATGAGAGAAATAGAGGATAGAACGAAAGAAA
TAGAGGATAGAACTAAAGAATTAGAGGATAAAATGAAGGTCTTAGAGGATAGAGTGAAAGAAATG
AAGATGATAGCATGATGGTTTCTGACGTGAGAGTGGCTATCCGAGGAATTGAGAATCCACTGTGG
AAGTGTGACTATTCTCGCAAAGGTACGGTGTGTTTCTCTATACGTCATCGAACGTTCGTAAAGGG
CAGGCTTCCCCGACGGTCTGTCTGTCGGAGTACCTGGGCAGATTC
Found at i:24427 original size:42 final size:40
Alignment explanation
Indices: 24336--24476 Score: 115
Period size: 42 Copynumber: 3.4 Consensus size: 40
24326 GAGGTGATAG
* *
24336 AAATAGAGGATAGAAAGAAAGGAATGGAGGATAGGATGAAA
1 AAATAGAGGATAGAATG-AAGGAATGGAGGATAGAATGAAA
* * *
24377 AAATTAGAGGATAGAATGAAGGTATTGGAGGTTAGAATGGAAG
1 AAA-TAGAGGATAGAATGAAGG-AATGGAGGATAGAAT-GAAA
* * * *
24420 TAATAGAGGTGATCGAATGAAGGAA-GG-GGAAAGAATGAAGG
1 AAATAGA-G-GATAGAATGAAGGAATGGAGGATAGAATGAA-A
*
24461 AAGTAGAGGATAGAAT
1 AAATAGAGGATAGAAT
24477 AAAAAATGGA
Statistics
Matches: 81, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
39 7 0.09
40 4 0.05
41 20 0.25
42 31 0.38
43 7 0.09
44 12 0.15
ACGTcount: A:0.47, C:0.01, G:0.35, T:0.17
Consensus pattern (40 bp):
AAATAGAGGATAGAATGAAGGAATGGAGGATAGAATGAAA
Left flanking sequence: Indices 23836 -- 24335
CGCGCGGGCTGAGCCTGCTGCCCGAGCGGCGGTCGCCGCTGTTGCCGCGCGAGTTGTCGCCGCTG
ATGAAGGCGCGGGTGGGCCGTGCGTTGGACATGTCGCACTATACGTAGGGGGGTGGCGTAGTGGC
GTAGTGGCAGCGAAGTAGCGATAGCGACGTAGCTACAGCGACCATAGCGGTTATTTATTTATTAC
GAATGAATGGAAGGAAAGAGAATGGAAGGAAAGAGGATGGAATGAAAGGAGGTGATAGACTGGAA
GTAATAGAGGATACAAGGAAGAAATAGAGGATGGAATGAAGAAATAGAGGATAGAATGAAGGTGT
TAGAGAATAGAATGAACCACCTTAGAGGATAATGAAAGAAATAGAAGTGATAGAATGAAGGGAAT
AGAGTATGGAATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGAAATAAGGGTGATAGAATGAA
AGATATAGAATGAAAGAAATAAAGGTGATAGAATAGAGGTGATAG
Right flanking sequence: Indices 24477 -- 24976
AAAAAATGGAGGTTTTAAAATAGAAGAAATAATGGTGATAGAACGAAAGATATAGAGGATAGAAT
GAAAGAGATAGAGGACAAAATCAAAGAAATAGAGGACAGAATGAATGAAATGGAATCAAGCAATA
GAGGATAGGATGACAATATGAAATAAATAGAGGATACAATGAGAGAAATAGAGGATAGAACGAAA
GAAATAGAGGATAGAACTAAAGAATTAGAGGATAAAATGAAGGTCTTAGAGGATAGAGTGAAAGA
AATGAAGATGATAGCATGATGGTTTCTGACGTGAGAGTGGCTATCCGAGGAATTGAGAATCCACT
GTGGAAGTGTGACTATTCTCGCAAAGGTACGGTGTGTTTCTCTATACGTCATCGAACGTTCGTAA
AGGGCAGGCTTCCCCGACGGTCTGTCTGTCGGAGTACCTGGGCAGATTCCGCAGGACAATAGTCG
GCTATTAAATCTAATAAGAGCCTGACCATCAATTCAACAAAAAAT
Found at i:24428 original size:21 final size:21
Alignment explanation
Indices: 24381--24429 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
24371 ATGAAAAAAT
* *
24381 TAGAGGATAGAATGAAGGTAT
1 TAGAGGTTAGAATGAAGGTAA
*
24402 TGGAGGTTAGAATGGAA-GTAA
1 TAGAGGTTAGAAT-GAAGGTAA
24423 TAGAGGT
1 TAGAGGT
24430 GATCGAATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (21 bp):
TAGAGGTTAGAATGAAGGTAA
Left flanking sequence: Indices 23881 -- 24380
CGCGCGAGTTGTCGCCGCTGATGAAGGCGCGGGTGGGCCGTGCGTTGGACATGTCGCACTATACG
TAGGGGGGTGGCGTAGTGGCGTAGTGGCAGCGAAGTAGCGATAGCGACGTAGCTACAGCGACCAT
AGCGGTTATTTATTTATTACGAATGAATGGAAGGAAAGAGAATGGAAGGAAAGAGGATGGAATGA
AAGGAGGTGATAGACTGGAAGTAATAGAGGATACAAGGAAGAAATAGAGGATGGAATGAAGAAAT
AGAGGATAGAATGAAGGTGTTAGAGAATAGAATGAACCACCTTAGAGGATAATGAAAGAAATAGA
AGTGATAGAATGAAGGGAATAGAGTATGGAATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGA
AATAAGGGTGATAGAATGAAAGATATAGAATGAAAGAAATAAAGGTGATAGAATAGAGGTGATAG
AAATAGAGGATAGAAAGAAAGGAATGGAGGATAGGATGAAAAAAT
Right flanking sequence: Indices 24430 -- 24929
GATCGAATGAAGGAAGGGGAAAGAATGAAGGAAGTAGAGGATAGAATAAAAAATGGAGGTTTTAA
AATAGAAGAAATAATGGTGATAGAACGAAAGATATAGAGGATAGAATGAAAGAGATAGAGGACAA
AATCAAAGAAATAGAGGACAGAATGAATGAAATGGAATCAAGCAATAGAGGATAGGATGACAATA
TGAAATAAATAGAGGATACAATGAGAGAAATAGAGGATAGAACGAAAGAAATAGAGGATAGAACT
AAAGAATTAGAGGATAAAATGAAGGTCTTAGAGGATAGAGTGAAAGAAATGAAGATGATAGCATG
ATGGTTTCTGACGTGAGAGTGGCTATCCGAGGAATTGAGAATCCACTGTGGAAGTGTGACTATTC
TCGCAAAGGTACGGTGTGTTTCTCTATACGTCATCGAACGTTCGTAAAGGGCAGGCTTCCCCGAC
GGTCTGTCTGTCGGAGTACCTGGGCAGATTCCGCAGGACAATAGT
Found at i:24704 original size:21 final size:21
Alignment explanation
Indices: 24513--24705 Score: 110
Period size: 21 Copynumber: 9.2 Consensus size: 21
24503 AAATAATGGT
*
24513 GATAGAACGAAAGATATAGAG
1 GATAGAACGAAAGAAATAGAG
* *
24534 GATAGAATGAAAGAGATAGAG
1 GATAGAACGAAAGAAATAGAG
* *
24555 GACAAAATC-AAAGAAATAGAG
1 GATAGAA-CGAAAGAAATAGAG
* * *
24576 GACAGAATGAATGAAAT-G-G
1 GATAGAACGAAAGAAATAGAG
* * * *
24595 AAT-CAA-GCAATAGAGGATAGGAT
1 GATAGAACG-AA-AGA-AATA-GAG
* * *
24618 GACA-ATATGAAATAAATAGAG
1 GATAGA-ACGAAAGAAATAGAG
* * *
24639 GATACAATGAGAGAAATAGAG
1 GATAGAACGAAAGAAATAGAG
24660 GATAGAACGAAAGAAATAGAG
1 GATAGAACGAAAGAAATAGAG
* *
24681 GATAGAACTAAAGAATTAGAG
1 GATAGAACGAAAGAAATAGAG
24702 GATA
1 GATA
24706 AAATGAAGGT
Statistics
Matches: 132, Mismatches: 28, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
17 1 0.01
18 4 0.03
19 4 0.03
20 3 0.02
21 107 0.81
22 5 0.04
23 4 0.03
24 3 0.02
25 1 0.01
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.15
Consensus pattern (21 bp):
GATAGAACGAAAGAAATAGAG
Left flanking sequence: Indices 24013 -- 24512
CGGTTATTTATTTATTACGAATGAATGGAAGGAAAGAGAATGGAAGGAAAGAGGATGGAATGAAA
GGAGGTGATAGACTGGAAGTAATAGAGGATACAAGGAAGAAATAGAGGATGGAATGAAGAAATAG
AGGATAGAATGAAGGTGTTAGAGAATAGAATGAACCACCTTAGAGGATAATGAAAGAAATAGAAG
TGATAGAATGAAGGGAATAGAGTATGGAATGGAAGAATGAAAGAAATGGAGGTGAAAGAATGAAA
TAAGGGTGATAGAATGAAAGATATAGAATGAAAGAAATAAAGGTGATAGAATAGAGGTGATAGAA
ATAGAGGATAGAAAGAAAGGAATGGAGGATAGGATGAAAAAATTAGAGGATAGAATGAAGGTATT
GGAGGTTAGAATGGAAGTAATAGAGGTGATCGAATGAAGGAAGGGGAAAGAATGAAGGAAGTAGA
GGATAGAATAAAAAATGGAGGTTTTAAAATAGAAGAAATAATGGT
Right flanking sequence: Indices 24706 -- 25205
AAATGAAGGTCTTAGAGGATAGAGTGAAAGAAATGAAGATGATAGCATGATGGTTTCTGACGTGA
GAGTGGCTATCCGAGGAATTGAGAATCCACTGTGGAAGTGTGACTATTCTCGCAAAGGTACGGTG
TGTTTCTCTATACGTCATCGAACGTTCGTAAAGGGCAGGCTTCCCCGACGGTCTGTCTGTCGGAG
TACCTGGGCAGATTCCGCAGGACAATAGTCGGCTATTAAATCTAATAAGAGCCTGACCATCAATT
CAACAAAAAATCTACTGGCTCACCTAAGTTTTTTCGGTCCCATCTGGTTGATTACTTCGAACTAC
GGGTCCTGTACGATTGACGCACCGAAGGTAGACGTTGGCAATAACCAACCGGGTCATCTGCCGTC
TCGTCTGGGTCATCACCACTCTTAAACTACTATTGTTCCCCTGATAATATTCGGGATTGCCAATT
GTCGGGCCAATTGTCATTAACCTTTGCCAAGCCTTCTCATAACCC
Found at i:26047 original size:18 final size:18
Alignment explanation
Indices: 25990--26038 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
25980 TGCACGGGGG
* *
25990 CTAGCCGCTATGGAGTGA
1 CTAGCCTCTACGGAGTGA
26008 CTAGCCTCTACGGAGTGA
1 CTAGCCTCTACGGAGTGA
26026 CTAGCCTCTACGG
1 CTAGCCTCTACGG
26039 GCGTCCTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (18 bp):
CTAGCCTCTACGGAGTGA
Left flanking sequence: Indices 25490 -- 25989
CGTTTCAAAGCTACGTCACCAACCAGTTGAGAAACACTTCTTTCGACAATTCGTGCATACGTCGG
TGCCCGTACAGGGAATATGGCTCCAACATCACCGAGTTGTGTCTCTACCACACCACATACGATGG
GTTTTGCGTCGAGGACAGGGGCTTCAAGTTCAAGTCGCAGAAGCTCCTGTATCAGGAGGAGAGAA
AGAGCTCCTCGGACCTGTTGCCGTACCTCGGTTTCCTCGCACTCTTGGTGCCTGTGGCCCTTCTC
GTGTGGTGGATCGTGCACAAGAGGCGGAAGGCGAAGGCGGCTAAGCCTGAGTCCGCACCGGTGCA
GCCGGTGGTTGAGCTGCCCCCCGATGAGGATTTGCCCCCGTACACGAAGTCTGAGGCCCAGGTGG
TCTGCAAACCCGTCCCAGATGTGTGAGCGTTGACAGAATCTTATGTACCTACCTACCATATCAAG
ACTTTCCAGGAAGTAAGCCTCGTCCACTTCTCAAGTGCACGGGGG
Right flanking sequence: Indices 26039 -- 26538
GCGTCCTAGAGTTTTGTGCGCGCTGGCTACATACGGAAGGTTGCAACCACCCTAGCTCCGCATTC
CTGATCTATTTAGAAACGATATATGACATCCAGCATCGAGAGAACCTCAAGCACTGGCCATACAA
AACTCTACCAGTAGTGACTTACACTTTTGATCCAAAGTTCTTAAATAAAAACTCAATATAATCTG
AAAGGCTTCATTACTATGTCTGATTCTAGCCGGCGAGCCCTCCAGAGGGCTACGCGGGCGGTGGT
GGCTTGGCCAGCGCAGGCGGTGGTGGTTTGGCAGCGGCCGGGGGCGCTGGCTTCGGTTTGGCGTC
GGGCGGAGGCGGCTTCGCGTCCACTGGAGGCGGTGGTTTGGTTTCCAGGGGCGGAGGCGGTTTGC
TCGCGACCGGGGGCGGTGGTTTGGCTGCGGGAGCCGGGGGTTTCGGGGCCAGCGCTGGCGGCGGT
GCCTGTGGAAGACTGGCGGGAGGTTGGGTGGTGGTGGGAGGCGCC
Found at i:26317 original size:24 final size:23
Alignment explanation
Indices: 26290--26334 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
26280 GGGCTACGCG
26290 GGCGGTGGTGGCTTGGCCAGCGCA
1 GGCGGTGGTGGCTTGG-CAGCGCA
*
26314 GGCGGTGGTGGTTTGGCAGCG
1 GGCGGTGGTGGCTTGGCAGCG
26335 GCCGGGGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.07, C:0.20, G:0.53, T:0.20
Consensus pattern (23 bp):
GGCGGTGGTGGCTTGGCAGCGCA
Left flanking sequence: Indices 25790 -- 26289
CTAAGCCTGAGTCCGCACCGGTGCAGCCGGTGGTTGAGCTGCCCCCCGATGAGGATTTGCCCCCG
TACACGAAGTCTGAGGCCCAGGTGGTCTGCAAACCCGTCCCAGATGTGTGAGCGTTGACAGAATC
TTATGTACCTACCTACCATATCAAGACTTTCCAGGAAGTAAGCCTCGTCCACTTCTCAAGTGCAC
GGGGGCTAGCCGCTATGGAGTGACTAGCCTCTACGGAGTGACTAGCCTCTACGGGCGTCCTAGAG
TTTTGTGCGCGCTGGCTACATACGGAAGGTTGCAACCACCCTAGCTCCGCATTCCTGATCTATTT
AGAAACGATATATGACATCCAGCATCGAGAGAACCTCAAGCACTGGCCATACAAAACTCTACCAG
TAGTGACTTACACTTTTGATCCAAAGTTCTTAAATAAAAACTCAATATAATCTGAAAGGCTTCAT
TACTATGTCTGATTCTAGCCGGCGAGCCCTCCAGAGGGCTACGCG
Right flanking sequence: Indices 26335 -- 26834
GCCGGGGGCGCTGGCTTCGGTTTGGCGTCGGGCGGAGGCGGCTTCGCGTCCACTGGAGGCGGTGG
TTTGGTTTCCAGGGGCGGAGGCGGTTTGCTCGCGACCGGGGGCGGTGGTTTGGCTGCGGGAGCCG
GGGGTTTCGGGGCCAGCGCTGGCGGCGGTGCCTGTGGAAGACTGGCGGGAGGTTGGGTGGTGGTG
GGAGGCGCCTGAGGAAGCCCTGGTGGAGCCTGAGCCACTGGAGGAGCCTGAGCCACTGGAGGGGC
CTGAGCCACTGGGGGAGCCTGTGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTG
GCAACCCAGGTGGCGCTTGAGGAAGGCCCGGTGGCGCTTGAGGAAGGCCCGGTGGAGCCTGTGGC
AACCCTGGAGGCGCCTGAGGCAACCCTGGAGGCTGAGGCAACCCTGGAGGCCCATGAGGCCCAGG
AGACCCCTGCGACCCCTCGTCGTCCACCCGCCGTCTCTTCCCTTC
Found at i:26575 original size:18 final size:18
Alignment explanation
Indices: 26545--26615 Score: 108
Period size: 18 Copynumber: 4.0 Consensus size: 18
26535 CGCCTGAGGA
*
26545 AGCC-CTGGTGGAGCCTG
1 AGCCACTGGAGGAGCCTG
26562 AGCCACTGGAGGAGCCTG
1 AGCCACTGGAGGAGCCTG
*
26580 AGCCACTGGAGGGGCCTG
1 AGCCACTGGAGGAGCCTG
*
26598 AGCCACTGGGGGAGCCTG
1 AGCCACTGGAGGAGCCTG
26616 TGGAAGGCCC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 4 0.08
18 45 0.92
ACGTcount: A:0.17, C:0.28, G:0.42, T:0.13
Consensus pattern (18 bp):
AGCCACTGGAGGAGCCTG
Left flanking sequence: Indices 26045 -- 26544
TAGAGTTTTGTGCGCGCTGGCTACATACGGAAGGTTGCAACCACCCTAGCTCCGCATTCCTGATC
TATTTAGAAACGATATATGACATCCAGCATCGAGAGAACCTCAAGCACTGGCCATACAAAACTCT
ACCAGTAGTGACTTACACTTTTGATCCAAAGTTCTTAAATAAAAACTCAATATAATCTGAAAGGC
TTCATTACTATGTCTGATTCTAGCCGGCGAGCCCTCCAGAGGGCTACGCGGGCGGTGGTGGCTTG
GCCAGCGCAGGCGGTGGTGGTTTGGCAGCGGCCGGGGGCGCTGGCTTCGGTTTGGCGTCGGGCGG
AGGCGGCTTCGCGTCCACTGGAGGCGGTGGTTTGGTTTCCAGGGGCGGAGGCGGTTTGCTCGCGA
CCGGGGGCGGTGGTTTGGCTGCGGGAGCCGGGGGTTTCGGGGCCAGCGCTGGCGGCGGTGCCTGT
GGAAGACTGGCGGGAGGTTGGGTGGTGGTGGGAGGCGCCTGAGGA
Right flanking sequence: Indices 26616 -- 27115
TGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCCAGGTGGCGCTTGAG
GAAGGCCCGGTGGCGCTTGAGGAAGGCCCGGTGGAGCCTGTGGCAACCCTGGAGGCGCCTGAGGC
AACCCTGGAGGCTGAGGCAACCCTGGAGGCCCATGAGGCCCAGGAGACCCCTGCGACCCCTCGTC
GTCCACCCGCCGTCTCTTCCCTTCGGGCTCGTCCCCAGAAACACCCCGCACCTTACAATCGCGCG
CGTAGTGGCCCACCTTCCCGCAGTTGTTGCACACCACGCTGGTGATGTCGAGCCGGGGCCGCAGC
TCGTCCACGTAGGGCTTGGTCTCGCGCAACGTCCCGTTGAGGATGGCCAAGTCGCGCAACTGGTT
GCGCTTGAGGTCGTTCTGGCCCACCGGCAGCTCGATGGCCTTGTTGACGATCTCCATCGCGAGCT
TCGACGCCACCGCGATCTTGTGCTGGGAGTCAGCGGTGATCACCA
Found at i:26633 original size:21 final size:21
Alignment explanation
Indices: 26608--26720 Score: 122
Period size: 21 Copynumber: 5.4 Consensus size: 21
26598 AGCCACTGGG
*
26608 GGAGCCTGTGGAAGGCCCGGT
1 GGAGCCTGAGGAAGGCCCGGT
* *
26629 GGAGCCTGAGGAAGACCAGGT
1 GGAGCCTGAGGAAGGCCCGGT
*
26650 GGAGCCTGTGGCAA--CCCAGGT
1 GGAGCCTGAGG-AAGGCCC-GGT
* *
26671 GGCGCTTGAGGAAGGCCCGGT
1 GGAGCCTGAGGAAGGCCCGGT
* *
26692 GGCGCTTGAGGAAGGCCCGGT
1 GGAGCCTGAGGAAGGCCCGGT
26713 GGAGCCTG
1 GGAGCCTG
26721 TGGCAACCCT
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
20 4 0.05
21 69 0.88
22 5 0.06
ACGTcount: A:0.18, C:0.24, G:0.45, T:0.13
Consensus pattern (21 bp):
GGAGCCTGAGGAAGGCCCGGT
Left flanking sequence: Indices 26108 -- 26607
TCTATTTAGAAACGATATATGACATCCAGCATCGAGAGAACCTCAAGCACTGGCCATACAAAACT
CTACCAGTAGTGACTTACACTTTTGATCCAAAGTTCTTAAATAAAAACTCAATATAATCTGAAAG
GCTTCATTACTATGTCTGATTCTAGCCGGCGAGCCCTCCAGAGGGCTACGCGGGCGGTGGTGGCT
TGGCCAGCGCAGGCGGTGGTGGTTTGGCAGCGGCCGGGGGCGCTGGCTTCGGTTTGGCGTCGGGC
GGAGGCGGCTTCGCGTCCACTGGAGGCGGTGGTTTGGTTTCCAGGGGCGGAGGCGGTTTGCTCGC
GACCGGGGGCGGTGGTTTGGCTGCGGGAGCCGGGGGTTTCGGGGCCAGCGCTGGCGGCGGTGCCT
GTGGAAGACTGGCGGGAGGTTGGGTGGTGGTGGGAGGCGCCTGAGGAAGCCCTGGTGGAGCCTGA
GCCACTGGAGGAGCCTGAGCCACTGGAGGGGCCTGAGCCACTGGG
Right flanking sequence: Indices 26721 -- 27220
TGGCAACCCTGGAGGCGCCTGAGGCAACCCTGGAGGCTGAGGCAACCCTGGAGGCCCATGAGGCC
CAGGAGACCCCTGCGACCCCTCGTCGTCCACCCGCCGTCTCTTCCCTTCGGGCTCGTCCCCAGAA
ACACCCCGCACCTTACAATCGCGCGCGTAGTGGCCCACCTTCCCGCAGTTGTTGCACACCACGCT
GGTGATGTCGAGCCGGGGCCGCAGCTCGTCCACGTAGGGCTTGGTCTCGCGCAACGTCCCGTTGA
GGATGGCCAAGTCGCGCAACTGGTTGCGCTTGAGGTCGTTCTGGCCCACCGGCAGCTCGATGGCC
TTGTTGACGATCTCCATCGCGAGCTTCGACGCCACCGCGATCTTGTGCTGGGAGTCAGCGGTGAT
CACCACGTGCAAATCGTCTGCGTGGGGCCCAGCGTCGTCAGACTTGCCGTCCTTGACCAGGCCCT
TCCCTCGGATGGCCAACTTGGCCCCCAGCTTCTCCTCGAGCTGGC
Found at i:26685 original size:63 final size:63
Alignment explanation
Indices: 26611--26744 Score: 196
Period size: 63 Copynumber: 2.1 Consensus size: 63
26601 CACTGGGGGA
* *
26611 GCCTGTGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCCAGGTGGC
1 GCCTGAGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCCAGGAGGC
* * * * * *
26674 GCTTGAGGAAGGCCCGGTGGCGCTTGAGGAAGGCCCGGTGGAGCCTGTGGCAACCCTGGAGGC
1 GCCTGAGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCCAGGAGGC
26737 GCCTGAGG
1 GCCTGAGG
26745 CAACCCTGGA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.17, C:0.25, G:0.44, T:0.13
Consensus pattern (63 bp):
GCCTGAGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCCAGGAGGC
Left flanking sequence: Indices 26111 -- 26610
ATTTAGAAACGATATATGACATCCAGCATCGAGAGAACCTCAAGCACTGGCCATACAAAACTCTA
CCAGTAGTGACTTACACTTTTGATCCAAAGTTCTTAAATAAAAACTCAATATAATCTGAAAGGCT
TCATTACTATGTCTGATTCTAGCCGGCGAGCCCTCCAGAGGGCTACGCGGGCGGTGGTGGCTTGG
CCAGCGCAGGCGGTGGTGGTTTGGCAGCGGCCGGGGGCGCTGGCTTCGGTTTGGCGTCGGGCGGA
GGCGGCTTCGCGTCCACTGGAGGCGGTGGTTTGGTTTCCAGGGGCGGAGGCGGTTTGCTCGCGAC
CGGGGGCGGTGGTTTGGCTGCGGGAGCCGGGGGTTTCGGGGCCAGCGCTGGCGGCGGTGCCTGTG
GAAGACTGGCGGGAGGTTGGGTGGTGGTGGGAGGCGCCTGAGGAAGCCCTGGTGGAGCCTGAGCC
ACTGGAGGAGCCTGAGCCACTGGAGGGGCCTGAGCCACTGGGGGA
Right flanking sequence: Indices 26745 -- 27244
CAACCCTGGAGGCTGAGGCAACCCTGGAGGCCCATGAGGCCCAGGAGACCCCTGCGACCCCTCGT
CGTCCACCCGCCGTCTCTTCCCTTCGGGCTCGTCCCCAGAAACACCCCGCACCTTACAATCGCGC
GCGTAGTGGCCCACCTTCCCGCAGTTGTTGCACACCACGCTGGTGATGTCGAGCCGGGGCCGCAG
CTCGTCCACGTAGGGCTTGGTCTCGCGCAACGTCCCGTTGAGGATGGCCAAGTCGCGCAACTGGT
TGCGCTTGAGGTCGTTCTGGCCCACCGGCAGCTCGATGGCCTTGTTGACGATCTCCATCGCGAGC
TTCGACGCCACCGCGATCTTGTGCTGGGAGTCAGCGGTGATCACCACGTGCAAATCGTCTGCGTG
GGGCCCAGCGTCGTCAGACTTGCCGTCCTTGACCAGGCCCTTCCCTCGGATGGCCAACTTGGCCC
CCAGCTTCTCCTCGAGCTGGCGCAAAGTGTTGCCTCTCGGGCCCA
Found at i:26741 original size:21 final size:21
Alignment explanation
Indices: 26716--26784 Score: 92
Period size: 21 Copynumber: 3.4 Consensus size: 21
26706 GCCCGGTGGA
*
26716 GCCTGTGGCAACCCTGGAGGC
1 GCCTGAGGCAACCCTGGAGGC
26737 GCCTGAGGCAACCCTGGA-G-
1 GCCTGAGGCAACCCTGGAGGC
26756 G-CTGAGGCAACCCTGGAGGC
1 GCCTGAGGCAACCCTGGAGGC
26776 -CCATGAGGC
1 GCC-TGAGGC
26785 CCAGGAGACC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
18 16 0.37
19 2 0.05
20 2 0.05
21 23 0.53
ACGTcount: A:0.19, C:0.32, G:0.38, T:0.12
Consensus pattern (21 bp):
GCCTGAGGCAACCCTGGAGGC
Left flanking sequence: Indices 26216 -- 26715
AAAACTCAATATAATCTGAAAGGCTTCATTACTATGTCTGATTCTAGCCGGCGAGCCCTCCAGAG
GGCTACGCGGGCGGTGGTGGCTTGGCCAGCGCAGGCGGTGGTGGTTTGGCAGCGGCCGGGGGCGC
TGGCTTCGGTTTGGCGTCGGGCGGAGGCGGCTTCGCGTCCACTGGAGGCGGTGGTTTGGTTTCCA
GGGGCGGAGGCGGTTTGCTCGCGACCGGGGGCGGTGGTTTGGCTGCGGGAGCCGGGGGTTTCGGG
GCCAGCGCTGGCGGCGGTGCCTGTGGAAGACTGGCGGGAGGTTGGGTGGTGGTGGGAGGCGCCTG
AGGAAGCCCTGGTGGAGCCTGAGCCACTGGAGGAGCCTGAGCCACTGGAGGGGCCTGAGCCACTG
GGGGAGCCTGTGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCCAGGT
GGCGCTTGAGGAAGGCCCGGTGGCGCTTGAGGAAGGCCCGGTGGA
Right flanking sequence: Indices 26785 -- 27284
CCAGGAGACCCCTGCGACCCCTCGTCGTCCACCCGCCGTCTCTTCCCTTCGGGCTCGTCCCCAGA
AACACCCCGCACCTTACAATCGCGCGCGTAGTGGCCCACCTTCCCGCAGTTGTTGCACACCACGC
TGGTGATGTCGAGCCGGGGCCGCAGCTCGTCCACGTAGGGCTTGGTCTCGCGCAACGTCCCGTTG
AGGATGGCCAAGTCGCGCAACTGGTTGCGCTTGAGGTCGTTCTGGCCCACCGGCAGCTCGATGGC
CTTGTTGACGATCTCCATCGCGAGCTTCGACGCCACCGCGATCTTGTGCTGGGAGTCAGCGGTGA
TCACCACGTGCAAATCGTCTGCGTGGGGCCCAGCGTCGTCAGACTTGCCGTCCTTGACCAGGCCC
TTCCCTCGGATGGCCAACTTGGCCCCCAGCTTCTCCTCGAGCTGGCGCAAAGTGTTGCCTCTCGG
GCCCAAAAGAAGACCGACGAAATTGATCCCAGGGTTGTCGTGCAC
Found at i:26762 original size:18 final size:18
Alignment explanation
Indices: 26712--26775 Score: 83
Period size: 18 Copynumber: 3.4 Consensus size: 18
26702 GAAGGCCCGG
* *
26712 TGGAGCCTGTGGCAACCC
1 TGGAGGCTGAGGCAACCC
26730 TGGAGGCGCCTGAGGCAACCC
1 TGGA-G-G-CTGAGGCAACCC
26751 TGGAGGCTGAGGCAACCC
1 TGGAGGCTGAGGCAACCC
26769 TGGAGGC
1 TGGAGGC
26776 CCATGAGGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 23 0.56
19 2 0.05
20 1 0.02
21 15 0.37
ACGTcount: A:0.19, C:0.30, G:0.39, T:0.12
Consensus pattern (18 bp):
TGGAGGCTGAGGCAACCC
Left flanking sequence: Indices 26212 -- 26711
AATAAAAACTCAATATAATCTGAAAGGCTTCATTACTATGTCTGATTCTAGCCGGCGAGCCCTCC
AGAGGGCTACGCGGGCGGTGGTGGCTTGGCCAGCGCAGGCGGTGGTGGTTTGGCAGCGGCCGGGG
GCGCTGGCTTCGGTTTGGCGTCGGGCGGAGGCGGCTTCGCGTCCACTGGAGGCGGTGGTTTGGTT
TCCAGGGGCGGAGGCGGTTTGCTCGCGACCGGGGGCGGTGGTTTGGCTGCGGGAGCCGGGGGTTT
CGGGGCCAGCGCTGGCGGCGGTGCCTGTGGAAGACTGGCGGGAGGTTGGGTGGTGGTGGGAGGCG
CCTGAGGAAGCCCTGGTGGAGCCTGAGCCACTGGAGGAGCCTGAGCCACTGGAGGGGCCTGAGCC
ACTGGGGGAGCCTGTGGAAGGCCCGGTGGAGCCTGAGGAAGACCAGGTGGAGCCTGTGGCAACCC
AGGTGGCGCTTGAGGAAGGCCCGGTGGCGCTTGAGGAAGGCCCGG
Right flanking sequence: Indices 26776 -- 27275
CCATGAGGCCCAGGAGACCCCTGCGACCCCTCGTCGTCCACCCGCCGTCTCTTCCCTTCGGGCTC
GTCCCCAGAAACACCCCGCACCTTACAATCGCGCGCGTAGTGGCCCACCTTCCCGCAGTTGTTGC
ACACCACGCTGGTGATGTCGAGCCGGGGCCGCAGCTCGTCCACGTAGGGCTTGGTCTCGCGCAAC
GTCCCGTTGAGGATGGCCAAGTCGCGCAACTGGTTGCGCTTGAGGTCGTTCTGGCCCACCGGCAG
CTCGATGGCCTTGTTGACGATCTCCATCGCGAGCTTCGACGCCACCGCGATCTTGTGCTGGGAGT
CAGCGGTGATCACCACGTGCAAATCGTCTGCGTGGGGCCCAGCGTCGTCAGACTTGCCGTCCTTG
ACCAGGCCCTTCCCTCGGATGGCCAACTTGGCCCCCAGCTTCTCCTCGAGCTGGCGCAAAGTGTT
GCCTCTCGGGCCCAAAAGAAGACCGACGAAATTGATCCCAGGGTT
Found at i:27944 original size:12 final size:12
Alignment explanation
Indices: 27924--27959 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
27914 GGGGGACGTG
*
27924 GAAGATGAAGTA
1 GAAGGTGAAGTA
27936 GAAGGTGAAGTA
1 GAAGGTGAAGTA
*
27948 AAAGGTGAAGTA
1 GAAGGTGAAGTA
27960 AAAAGGTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.36, T:0.17
Consensus pattern (12 bp):
GAAGGTGAAGTA
Left flanking sequence: Indices 27424 -- 27923
GTGTTGGTGCGGTTACCGCGCGAGTCGTAGCGTGGTGGTGGCAGAGGCTCCCGTCGGTACCCCGG
ATTGGCCTCTGTGTTGCCCAGAGGCAAGATCAGGGTCACCGGACGGCGTCGCGAGCGGGCAAACC
GGAAAATGTCGGCGATCTCCTCGACGCGGAACATGTGCTGGTAGGCGTCGATCTGCTCGGCTGTG
AGCTGGCCCAGGATGATGGTGTCATACTGTGCCAGCCCCATCTTCTTGCGTGGCAGCGGAGCTCC
CAGCCAGCGACTCATGGTGATGAGATGTGTGCGGCTTGAAATTCTGGTGCGGGTGAAGGTGGGTG
GTGGGTTTGGTGTGGGGGGAAATAGAGGGATGTGTGGGGAGTGTGGGGAGTGGAGTGGGTGATTG
GTGGTTGGGTTTGAATGTGTTTATGGCGGTGTTTTGGTAATTGGGTGGGGGGGTGGTATTTGTGT
TGTGGTTGAGGCTGAGAATGAGAGAGTGCACTAAAGGGGGACGTG
Right flanking sequence: Indices 27960 -- 28459
AAAAGGTGTGGTAAAAATTGTTTGTACTATAGAAGCTCTATATTTACTCTACCTTTACTCTACCT
TTGTTTTCATGAGGGATTGTAATACTTTTTTGGTTTCCTCGATATCTCTCTGTGAGACCCTACGC
GAATGAAGTGTCTAAGTGAGTTGGTGAAAATAAAGACCTGTGTCAATGTACATGTATAAAACCAA
ATCAGCTTGACGTTGTCTTGCCATAGATAACAATAGCATTTAGTTCTGCCCAATTCCACTCAAGT
TGACTCAATCTAATCTATTCCAGCTGACATCATGAACCATACTGTAATACAAATACCACCCCTTT
TCCTTTAAAACACCACCCCGCCGTGCTTTGCACCCGCTGTCGTTCCACCAATCAACCTCCATTCC
CCCATTGTATCCAATCGTAACAATCACTCCACCCCACACCACACTATCTGCCCTACTCATACAAC
CACATCCACCCCAGCAAACACTTCCAAACACACTAATCAAATAAA
Found at i:27975 original size:12 final size:12
Alignment explanation
Indices: 27929--27967 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
27919 ACGTGGAAGA
*
27929 TGAAGTAGAAGG
1 TGAAGTAAAAGG
27941 TGAAGTAAAAGG
1 TGAAGTAAAAGG
27953 TGAAGTAAAAAGG
1 TGAAGT-AAAAGG
27966 TG
1 TG
27968 TGGTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 17 0.68
13 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.36, T:0.18
Consensus pattern (12 bp):
TGAAGTAAAAGG
Left flanking sequence: Indices 27429 -- 27928
GGTGCGGTTACCGCGCGAGTCGTAGCGTGGTGGTGGCAGAGGCTCCCGTCGGTACCCCGGATTGG
CCTCTGTGTTGCCCAGAGGCAAGATCAGGGTCACCGGACGGCGTCGCGAGCGGGCAAACCGGAAA
ATGTCGGCGATCTCCTCGACGCGGAACATGTGCTGGTAGGCGTCGATCTGCTCGGCTGTGAGCTG
GCCCAGGATGATGGTGTCATACTGTGCCAGCCCCATCTTCTTGCGTGGCAGCGGAGCTCCCAGCC
AGCGACTCATGGTGATGAGATGTGTGCGGCTTGAAATTCTGGTGCGGGTGAAGGTGGGTGGTGGG
TTTGGTGTGGGGGGAAATAGAGGGATGTGTGGGGAGTGTGGGGAGTGGAGTGGGTGATTGGTGGT
TGGGTTTGAATGTGTTTATGGCGGTGTTTTGGTAATTGGGTGGGGGGGTGGTATTTGTGTTGTGG
TTGAGGCTGAGAATGAGAGAGTGCACTAAAGGGGGACGTGGAAGA
Right flanking sequence: Indices 27968 -- 28467
TGGTAAAAATTGTTTGTACTATAGAAGCTCTATATTTACTCTACCTTTACTCTACCTTTGTTTTC
ATGAGGGATTGTAATACTTTTTTGGTTTCCTCGATATCTCTCTGTGAGACCCTACGCGAATGAAG
TGTCTAAGTGAGTTGGTGAAAATAAAGACCTGTGTCAATGTACATGTATAAAACCAAATCAGCTT
GACGTTGTCTTGCCATAGATAACAATAGCATTTAGTTCTGCCCAATTCCACTCAAGTTGACTCAA
TCTAATCTATTCCAGCTGACATCATGAACCATACTGTAATACAAATACCACCCCTTTTCCTTTAA
AACACCACCCCGCCGTGCTTTGCACCCGCTGTCGTTCCACCAATCAACCTCCATTCCCCCATTGT
ATCCAATCGTAACAATCACTCCACCCCACACCACACTATCTGCCCTACTCATACAACCACATCCA
CCCCAGCAAACACTTCCAAACACACTAATCAAATAAATTTAAAGA
Found at i:28023 original size:11 final size:11
Alignment explanation
Indices: 28002--28026 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27992 AAGCTCTATA
28002 TTTACTCTACC
1 TTTACTCTACC
28013 TTTACTCTACC
1 TTTACTCTACC
28024 TTT
1 TTT
28027 GTTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTACTCTACC
Left flanking sequence: Indices 27502 -- 28001
TTGCCCAGAGGCAAGATCAGGGTCACCGGACGGCGTCGCGAGCGGGCAAACCGGAAAATGTCGGC
GATCTCCTCGACGCGGAACATGTGCTGGTAGGCGTCGATCTGCTCGGCTGTGAGCTGGCCCAGGA
TGATGGTGTCATACTGTGCCAGCCCCATCTTCTTGCGTGGCAGCGGAGCTCCCAGCCAGCGACTC
ATGGTGATGAGATGTGTGCGGCTTGAAATTCTGGTGCGGGTGAAGGTGGGTGGTGGGTTTGGTGT
GGGGGGAAATAGAGGGATGTGTGGGGAGTGTGGGGAGTGGAGTGGGTGATTGGTGGTTGGGTTTG
AATGTGTTTATGGCGGTGTTTTGGTAATTGGGTGGGGGGGTGGTATTTGTGTTGTGGTTGAGGCT
GAGAATGAGAGAGTGCACTAAAGGGGGACGTGGAAGATGAAGTAGAAGGTGAAGTAAAAGGTGAA
GTAAAAAGGTGTGGTAAAAATTGTTTGTACTATAGAAGCTCTATA
Right flanking sequence: Indices 28027 -- 28526
GTTTTCATGAGGGATTGTAATACTTTTTTGGTTTCCTCGATATCTCTCTGTGAGACCCTACGCGA
ATGAAGTGTCTAAGTGAGTTGGTGAAAATAAAGACCTGTGTCAATGTACATGTATAAAACCAAAT
CAGCTTGACGTTGTCTTGCCATAGATAACAATAGCATTTAGTTCTGCCCAATTCCACTCAAGTTG
ACTCAATCTAATCTATTCCAGCTGACATCATGAACCATACTGTAATACAAATACCACCCCTTTTC
CTTTAAAACACCACCCCGCCGTGCTTTGCACCCGCTGTCGTTCCACCAATCAACCTCCATTCCCC
CATTGTATCCAATCGTAACAATCACTCCACCCCACACCACACTATCTGCCCTACTCATACAACCA
CATCCACCCCAGCAAACACTTCCAAACACACTAATCAAATAAATTTAAAGAATACCACTTCTCCT
CTTCAACCCTTCAAAACGCCCCCTGTTCCCTTCCTCTTCCCCTTC
Found at i:31450 original size:17 final size:18
Alignment explanation
Indices: 31418--31451 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31408 TCCCAAGATT
31418 GAGAAGTTGTTGAAGAAC
1 GAGAAGTTGTTGAAGAAC
31436 GAGAAGTTG-TGAAGAA
1 GAGAAGTTGTTGAAGAA
31452 TATGAGCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.41, C:0.03, G:0.35, T:0.21
Consensus pattern (18 bp):
GAGAAGTTGTTGAAGAAC
Left flanking sequence: Indices 30918 -- 31417
GGTCCACTGTCCGAACCGCAACAATTGCACGCAGAATGTCTTCGTTTTATGATTTGGCACCCAAG
GACGCAAAGGGCGAGCCCTTCCCGTTCTCCCAGTTGAAGGGCAAGGTGGTGGTGATTGTCAATGT
TGCCTCCAAGTGTGGTTTTACTCCCCAGTACAAGGAGTTGGAGTCCCTCAACCAGCAATTTAAGG
ACCAGCCGGTGCAGATCATCGGGTTCCCGTGCAACCAGTTCAACAAGCAGGAGCCTGGCTCCGAT
GCTGACATCCAGAACTTCTGCCTGGTCAACTACGGGGTCACTTTCCCCGTGCTTGCCAAGATCGA
TGTCAACGGAGACAACGCTGACCCCGTGTACAAGTACTTGAAGGACCAGAAGGCGGGTTTGCTTG
GGTTGACCCGGATCAAGTGGAACTTTGAGAAGTTTTTGGTGGACCAGAACGGGCAGGTGGTCGAG
CGGTTTGGTCTGATCACCAAGCCCTCGAACTTGGCTCCCAAGATT
Right flanking sequence: Indices 31452 -- 31951
TATGAGCAGATTGCTTGTTAATGGTGTTTAATTGTAATGAATAATAAGGTAATTGGATAAGGCTT
GTAGGGGATAAAGTTAGTGGTGGTGGAGAAAAGGTGGATTTTATGGAGAAGAGGTGGGTTTGGTG
GAGAAGGTCGAGATTGCGTAGGATGAAGAAATGTGGAGTAGAGGACGAGCTTGTGATATGAGGGA
ATTGGTGGGGTTGTTGAAATTTCTGGAATTGTTTTATCGGTAGGGAGTTGGTGGGTAGTAGAGAG
TTGATAGGTCGAGTAGTTTCATTAGTGGTTTTCGAATTCCCCATCGGGAATCGTTAGCGGTAGAC
CGTTGACCGTTGCGCTAAGGTCTTGGCTTTTGTCGCTAAATACCCGGTGGTTCCGGTGGCTCAAA
TCCGTTGCCACAAAGACCACGTAATCTCCACTAAATTTTCAAATGCTAAAGCCGTCTAAACGGAC
TCCGTATAGCCACCCGTTTCAAGGGATCACCTTTCCAACTCTATT
Found at i:31583 original size:20 final size:20
Alignment explanation
Indices: 31537--31587 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
31527 AAGTTAGTGG
*
31537 TGGTGGAGAAAAGGTGGATT
1 TGGTGGAGAAGAGGTGGATT
** *
31557 TTATGGAGAAGAGGTGGGTT
1 TGGTGGAGAAGAGGTGGATT
31577 TGGTGGAGAAG
1 TGGTGGAGAAG
31588 GTCGAGATTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.47, T:0.25
Consensus pattern (20 bp):
TGGTGGAGAAGAGGTGGATT
Left flanking sequence: Indices 31037 -- 31536
ATTGTCAATGTTGCCTCCAAGTGTGGTTTTACTCCCCAGTACAAGGAGTTGGAGTCCCTCAACCA
GCAATTTAAGGACCAGCCGGTGCAGATCATCGGGTTCCCGTGCAACCAGTTCAACAAGCAGGAGC
CTGGCTCCGATGCTGACATCCAGAACTTCTGCCTGGTCAACTACGGGGTCACTTTCCCCGTGCTT
GCCAAGATCGATGTCAACGGAGACAACGCTGACCCCGTGTACAAGTACTTGAAGGACCAGAAGGC
GGGTTTGCTTGGGTTGACCCGGATCAAGTGGAACTTTGAGAAGTTTTTGGTGGACCAGAACGGGC
AGGTGGTCGAGCGGTTTGGTCTGATCACCAAGCCCTCGAACTTGGCTCCCAAGATTGAGAAGTTG
TTGAAGAACGAGAAGTTGTGAAGAATATGAGCAGATTGCTTGTTAATGGTGTTTAATTGTAATGA
ATAATAAGGTAATTGGATAAGGCTTGTAGGGGATAAAGTTAGTGG
Right flanking sequence: Indices 31588 -- 32087
GTCGAGATTGCGTAGGATGAAGAAATGTGGAGTAGAGGACGAGCTTGTGATATGAGGGAATTGGT
GGGGTTGTTGAAATTTCTGGAATTGTTTTATCGGTAGGGAGTTGGTGGGTAGTAGAGAGTTGATA
GGTCGAGTAGTTTCATTAGTGGTTTTCGAATTCCCCATCGGGAATCGTTAGCGGTAGACCGTTGA
CCGTTGCGCTAAGGTCTTGGCTTTTGTCGCTAAATACCCGGTGGTTCCGGTGGCTCAAATCCGTT
GCCACAAAGACCACGTAATCTCCACTAAATTTTCAAATGCTAAAGCCGTCTAAACGGACTCCGTA
TAGCCACCCGTTTCAAGGGATCACCTTTCCAACTCTATTCGCACTGGGCTCTTACCGACGCTAAC
CGAGCAACCACGCAACCCCGGCGAAACCACGCCCGAAGTCCCCAATGGCCACCTCCACACCCTCT
CCTCCACCTTCTCATCTTCCCCATACTCTTTTCCACCGCTCCCAG
Found at i:33669 original size:17 final size:15
Alignment explanation
Indices: 33647--33922 Score: 81
Period size: 14 Copynumber: 19.3 Consensus size: 15
33637 GAATGATAAC
33647 TCTAATGCTTCTGAAAT
1 TCTAATGCTTCTG--AT
* **
33664 TCTAATACCCCTG-T
1 TCTAATGCTTCTGAT
*
33678 TCTTATGCTTCT-AT
1 TCTAATGCTTCTGAT
33692 TCTAATGCTTCTGAAAT
1 TCTAATGCTTCTG--AT
*
33709 TCTAATACTTCT-ACT
1 TCTAATGCTTCTGA-T
* *
33724 T-TAATATCTT-T-AA
1 TCTAAT-GCTTCTGAT
* * *
33737 ACTAATACTTGT-AT
1 TCTAATGCTTCTGAT
*
33751 ACTAATGCTTCT-AT
1 TCTAATGCTTCTGAT
33765 TCTAATGCTTCTG-T
1 TCTAATGCTTCTGAT
*
33779 TCTGATGCTTCTGAAAT
1 TCTAATGCTTCTG--AT
* *
33796 TTTAATACTTCT-AT
1 TCTAATGCTTCTGAT
* *
33810 TCAAATACTTCT-AT
1 TCTAATGCTTCTGAT
** *
33824 TCTAAAACCTCT-AT
1 TCTAATGCTTCTGAT
* *
33838 TCTAATACCTCT-AT
1 TCTAATGCTTCTGAT
* *
33852 TCTATTACTTCT-AT
1 TCTAATGCTTCTGAT
* * *
33866 TCTATTACCTCT-AT
1 TCTAATGCTTCTGAT
*
33880 TCAAATGCTTCT-A-
1 TCTAATGCTTCTGAT
*
33893 TCAAATGC--CT-AT
1 TCTAATGCTTCTGAT
33905 TCTAATGCTTCT-AT
1 TCTAATGCTTCTGAT
33919 TCTA
1 TCTA
33923 CACTCTAGTC
Statistics
Matches: 209, Mismatches: 35, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
11 3 0.01
12 7 0.03
13 11 0.05
14 150 0.72
15 5 0.02
17 33 0.16
ACGTcount: A:0.27, C:0.22, G:0.06, T:0.45
Consensus pattern (15 bp):
TCTAATGCTTCTGAT
Left flanking sequence: Indices 33147 -- 33646
GTCAACGACTTTGGCTGGGACATGCCCGAGAACGCCGAGCTCGACGGGTTCACTTTGACGGGCCA
CGGGTACACCGCCAACGACATGCCTCTGGGCCGGCCCAAGGGGTCGGTGTACTGGCTGGGGCTCG
GCAACTTGTACTACTGGATCGATGTCGAGAACAAGGTGGGCGGGTTCTGGGCCGAGCAGATCTTG
CCGTTCTTGGACCCGGAGCTGACGAAGCACTACCGCCAATTTGAGACGGCGGTGTACAACCACTT
GTCGAAGAAGCACCATTTATAGCTAGACTAGATGAAGAAACGAAGGTATTTTTTGGGAATTGGGT
TGAGGTGATTTGCGAATGGTAGGGCTGTTCTTTCAAGTTGTGGTCGGCAGTTAAATTTACACGGT
TCTACTAGGACTCTTGATTGTTTAACAATTCCTAAGTAGTAATTGGGCTTTTGATTGTGACCGTA
TTTTGGCCTAGGGAAAGGACCAACTCTCGTATTGTGAATGATAAC
Right flanking sequence: Indices 33923 -- 34422
CACTCTAGTCCCATGTTCCTCGGGTCAAAATCTACAAGCTCTCGCGGCAACATGCGATGCTTCAA
CGTCACTACCACGTCGTACAAGTCCGGCTCCCAGGGGTACCGCCAGTGGTCCTTGTACCACTCAA
TGTGTCGGATCCATATGTTGTGTTCCCGGTGAATGTAGAACCCCGTAAGCATAAAGTAGGAACAC
AAAATGTTGAGGATAGCGAGAGCCATGGGATCGCGGTCGTACACGGCGTCGTGGAACCTGGGAAC
GGCATACAAAAACGACCGAAGTGTCATTGGCGACCTCTCGTGTACCCCCTCTACCACGAGCGTGC
TTAAAGCCAACAAGGCTTCCTCCATGGATGGGTCGTCGGTGTAGTGAAGGACGTCCTCGAGGAAA
GGAACCCTCCCTTGAGGCATAGATTGGATGCCCCCTCCGATCAACCTGAGCTCACTTTCGGAATA
GAATGGTCGCGAAAGCCGGTAAGACTGCTGGAACCCGCGAATTAG
Found at i:33694 original size:14 final size:14
Alignment explanation
Indices: 33677--33922 Score: 151
Period size: 14 Copynumber: 17.4 Consensus size: 14
33667 AATACCCCTG
*
33677 TTCTTATGCTTCTA
1 TTCTAATGCTTCTA
33691 TTCTAATGCTTCTGAAA
1 TTCTAATGCTTCT---A
*
33708 TTCTAATACTTCTA
1 TTCTAATGCTTCTA
*
33722 CTT-TAATATCTT-TA
1 -TTCTAAT-GCTTCTA
** * *
33736 AACTAATACTTGTA
1 TTCTAATGCTTCTA
*
33750 TACTAATGCTTCTA
1 TTCTAATGCTTCTA
*
33764 TTCTAATGCTTCTG
1 TTCTAATGCTTCTA
*
33778 TTCTGATGCTTCTGAAA
1 TTCTAATGCTTCT---A
* *
33795 TTTTAATACTTCTA
1 TTCTAATGCTTCTA
* *
33809 TTCAAATACTTCTA
1 TTCTAATGCTTCTA
** *
33823 TTCTAAAACCTCTA
1 TTCTAATGCTTCTA
* *
33837 TTCTAATACCTCTA
1 TTCTAATGCTTCTA
* *
33851 TTCTATTACTTCTA
1 TTCTAATGCTTCTA
* * *
33865 TTCTATTACCTCTA
1 TTCTAATGCTTCTA
*
33879 TTCAAATGCTTCTA
1 TTCTAATGCTTCTA
*
33893 -TCAAATGC--CTA
1 TTCTAATGCTTCTA
33904 TTCTAATGCTTCTA
1 TTCTAATGCTTCTA
33918 TTCTA
1 TTCTA
33923 CACTCTAGTC
Statistics
Matches: 189, Mismatches: 30, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
11 3 0.02
12 7 0.04
13 11 0.06
14 140 0.74
15 5 0.03
17 23 0.12
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.46
Consensus pattern (14 bp):
TTCTAATGCTTCTA
Left flanking sequence: Indices 33177 -- 33676
AACGCCGAGCTCGACGGGTTCACTTTGACGGGCCACGGGTACACCGCCAACGACATGCCTCTGGG
CCGGCCCAAGGGGTCGGTGTACTGGCTGGGGCTCGGCAACTTGTACTACTGGATCGATGTCGAGA
ACAAGGTGGGCGGGTTCTGGGCCGAGCAGATCTTGCCGTTCTTGGACCCGGAGCTGACGAAGCAC
TACCGCCAATTTGAGACGGCGGTGTACAACCACTTGTCGAAGAAGCACCATTTATAGCTAGACTA
GATGAAGAAACGAAGGTATTTTTTGGGAATTGGGTTGAGGTGATTTGCGAATGGTAGGGCTGTTC
TTTCAAGTTGTGGTCGGCAGTTAAATTTACACGGTTCTACTAGGACTCTTGATTGTTTAACAATT
CCTAAGTAGTAATTGGGCTTTTGATTGTGACCGTATTTTGGCCTAGGGAAAGGACCAACTCTCGT
ATTGTGAATGATAACTCTAATGCTTCTGAAATTCTAATACCCCTG
Right flanking sequence: Indices 33923 -- 34422
CACTCTAGTCCCATGTTCCTCGGGTCAAAATCTACAAGCTCTCGCGGCAACATGCGATGCTTCAA
CGTCACTACCACGTCGTACAAGTCCGGCTCCCAGGGGTACCGCCAGTGGTCCTTGTACCACTCAA
TGTGTCGGATCCATATGTTGTGTTCCCGGTGAATGTAGAACCCCGTAAGCATAAAGTAGGAACAC
AAAATGTTGAGGATAGCGAGAGCCATGGGATCGCGGTCGTACACGGCGTCGTGGAACCTGGGAAC
GGCATACAAAAACGACCGAAGTGTCATTGGCGACCTCTCGTGTACCCCCTCTACCACGAGCGTGC
TTAAAGCCAACAAGGCTTCCTCCATGGATGGGTCGTCGGTGTAGTGAAGGACGTCCTCGAGGAAA
GGAACCCTCCCTTGAGGCATAGATTGGATGCCCCCTCCGATCAACCTGAGCTCACTTTCGGAATA
GAATGGTCGCGAAAGCCGGTAAGACTGCTGGAACCCGCGAATTAG
Found at i:33843 original size:87 final size:87
Alignment explanation
Indices: 33665--33869 Score: 225
Period size: 87 Copynumber: 2.4 Consensus size: 87
33655 TTCTGAAATT
* * * *
33665 CTAATACCCCTGTTCTTATGCTTCTATTCTAATGCTTCTGAAATTCTAATACTTCTACTTTAATA
1 CTAATACCTCTATTCTAATGCTTCTATTCTAATGCTTCTGAAATTCTAATACTTCTACTTAAATA
* * *
33730 TCTTTAAACTAATACTTGTATA
66 TCTTTAAACTAAAACCTCTATA
* * * * *
33752 CTAATGCTTCTATTCTAATGCTTCTGTTCTGATGCTTCTGAAATTTTAATACTTCTA-TTCAAAT
1 CTAATACCTCTATTCTAATGCTTCTATTCTAATGCTTCTGAAATTCTAATACTTCTACTT-AAAT
** *
33816 A-CTTCTATTCTAAAACCTCTATT
65 ATCTT-TAAACTAAAACCTCTATA
* *
33839 CTAATACCTCTATTCTATTACTTCTATTCTA
1 CTAATACCTCTATTCTAATGCTTCTATTCTA
33870 TTACCTCTAT
Statistics
Matches: 95, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
86 5 0.05
87 90 0.95
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.46
Consensus pattern (87 bp):
CTAATACCTCTATTCTAATGCTTCTATTCTAATGCTTCTGAAATTCTAATACTTCTACTTAAATA
TCTTTAAACTAAAACCTCTATA
Left flanking sequence: Indices 33165 -- 33664
GACATGCCCGAGAACGCCGAGCTCGACGGGTTCACTTTGACGGGCCACGGGTACACCGCCAACGA
CATGCCTCTGGGCCGGCCCAAGGGGTCGGTGTACTGGCTGGGGCTCGGCAACTTGTACTACTGGA
TCGATGTCGAGAACAAGGTGGGCGGGTTCTGGGCCGAGCAGATCTTGCCGTTCTTGGACCCGGAG
CTGACGAAGCACTACCGCCAATTTGAGACGGCGGTGTACAACCACTTGTCGAAGAAGCACCATTT
ATAGCTAGACTAGATGAAGAAACGAAGGTATTTTTTGGGAATTGGGTTGAGGTGATTTGCGAATG
GTAGGGCTGTTCTTTCAAGTTGTGGTCGGCAGTTAAATTTACACGGTTCTACTAGGACTCTTGAT
TGTTTAACAATTCCTAAGTAGTAATTGGGCTTTTGATTGTGACCGTATTTTGGCCTAGGGAAAGG
ACCAACTCTCGTATTGTGAATGATAACTCTAATGCTTCTGAAATT
Right flanking sequence: Indices 33870 -- 34369
TTACCTCTATTCAAATGCTTCTATCAAATGCCTATTCTAATGCTTCTATTCTACACTCTAGTCCC
ATGTTCCTCGGGTCAAAATCTACAAGCTCTCGCGGCAACATGCGATGCTTCAACGTCACTACCAC
GTCGTACAAGTCCGGCTCCCAGGGGTACCGCCAGTGGTCCTTGTACCACTCAATGTGTCGGATCC
ATATGTTGTGTTCCCGGTGAATGTAGAACCCCGTAAGCATAAAGTAGGAACACAAAATGTTGAGG
ATAGCGAGAGCCATGGGATCGCGGTCGTACACGGCGTCGTGGAACCTGGGAACGGCATACAAAAA
CGACCGAAGTGTCATTGGCGACCTCTCGTGTACCCCCTCTACCACGAGCGTGCTTAAAGCCAACA
AGGCTTCCTCCATGGATGGGTCGTCGGTGTAGTGAAGGACGTCCTCGAGGAAAGGAACCCTCCCT
TGAGGCATAGATTGGATGCCCCCTCCGATCAACCTGAGCTCACTT
Found at i:35415 original size:13 final size:13
Alignment explanation
Indices: 35397--35458 Score: 83
Period size: 13 Copynumber: 4.8 Consensus size: 13
35387 CGGTAGGTCG
35397 GCTGTCAC-ATACA
1 GCTGTCACAAT-CA
35410 GCTGTCACAATCA
1 GCTGTCACAATCA
*
35423 GCTATCAC-ATACA
1 GCTGTCACAAT-CA
35436 GCTGTCACAATCA
1 GCTGTCACAATCA
35449 GCTGTCACAA
1 GCTGTCACAA
35459 GCATTTGGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
12 2 0.05
13 38 0.86
14 4 0.09
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.23
Consensus pattern (13 bp):
GCTGTCACAATCA
Left flanking sequence: Indices 34897 -- 35396
GGAGCTGGTGCACTCCTCTATCCGGGCTCCGGTGACGGTATGGTTGACCCAGGGGGACTCTTTCG
CGGGGTACTCACAATGACGCCCGGTGGCAGCGCAGTACTCGCAGGGGGTTCTTTGGTCACACTGG
AGTTAGTATCATTCTGTTGAGGCACTGGGACATACTCACTCTGATCCGTAGTCGCCGGCAACTGA
AGCATTTGTGGGCCTTGGGGCGAGGCATGTTACGCAACAATGCTTCCATGCATATTGACGTGCGG
CCGATCGATAAGGTGAGGAAACTTCCGCGTGTATCTATCAAGAGTCTTGGTGGGTGATCTGGTAG
GGAATTGCCCAGAGTGGGTCACAAGACCTGAAATGGTCAATTGTGTTGTGACTCGGGCGGGGCCT
TCAGAGCATATTCAGGGCGAACTACTCTAAGCATGAGAATCCAGGTCTACCCAGGTCTAGACTAC
ACAGGTTAGAGTGATGCTGAGCACTACGCCGGAGTCGGTAGGTCG
Right flanking sequence: Indices 35459 -- 35958
GCATTTGGACATTAACCTAATTATAATCAGTCATTGAGTAGCTCAGGGCGAGAATCTGTTCACAC
CCCTCGCAACCCAATTGCCTACCCTACCTAAGACTCTATCCACCGTCGTTCGCACTGCTTCACTA
GCCACACACTGTCTGCGTCACTTTTGTCCGATTGTCCCTGCGTCTTTGTGTTACGCCCAGCCGTG
CGACATCTCGTAATTGCGGCTCCATGTGACCGTAACTCCTATCTAGCCGAGCTGCCTCGCTACCG
TCCGGCCCTCCTGCACCCCTATCTAACCTATCACAGTGGCCGTGTTCTTAAACCACTCATTGGTG
GTACGAGCACAAAGCCTTTCAACACCAAAACGCAACCAATACCGCCAAAAAACCCCACACCGACA
CCACACCGACACCACACCGACACCACGACCCCTCACCCAGCCGCCCCGTGATCTCGCCCCCGCGC
TAACCGACGTTCTACCCCACCTCGTCCTTCTGTTTCATCTGGCCG
Found at i:35437 original size:26 final size:26
Alignment explanation
Indices: 35401--35457 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
35391 AGGTCGGCTG
35401 TCACATACAGCTGTCACAATCAGCTA
1 TCACATACAGCTGTCACAATCAGCTA
*
35427 TCACATACAGCTGTCACAATCAGCTG
1 TCACATACAGCTGTCACAATCAGCTA
35453 TCACA
1 TCACA
35458 AGCATTTGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.32, G:0.12, T:0.23
Consensus pattern (26 bp):
TCACATACAGCTGTCACAATCAGCTA
Left flanking sequence: Indices 34901 -- 35400
CTGGTGCACTCCTCTATCCGGGCTCCGGTGACGGTATGGTTGACCCAGGGGGACTCTTTCGCGGG
GTACTCACAATGACGCCCGGTGGCAGCGCAGTACTCGCAGGGGGTTCTTTGGTCACACTGGAGTT
AGTATCATTCTGTTGAGGCACTGGGACATACTCACTCTGATCCGTAGTCGCCGGCAACTGAAGCA
TTTGTGGGCCTTGGGGCGAGGCATGTTACGCAACAATGCTTCCATGCATATTGACGTGCGGCCGA
TCGATAAGGTGAGGAAACTTCCGCGTGTATCTATCAAGAGTCTTGGTGGGTGATCTGGTAGGGAA
TTGCCCAGAGTGGGTCACAAGACCTGAAATGGTCAATTGTGTTGTGACTCGGGCGGGGCCTTCAG
AGCATATTCAGGGCGAACTACTCTAAGCATGAGAATCCAGGTCTACCCAGGTCTAGACTACACAG
GTTAGAGTGATGCTGAGCACTACGCCGGAGTCGGTAGGTCGGCTG
Right flanking sequence: Indices 35458 -- 35957
AGCATTTGGACATTAACCTAATTATAATCAGTCATTGAGTAGCTCAGGGCGAGAATCTGTTCACA
CCCCTCGCAACCCAATTGCCTACCCTACCTAAGACTCTATCCACCGTCGTTCGCACTGCTTCACT
AGCCACACACTGTCTGCGTCACTTTTGTCCGATTGTCCCTGCGTCTTTGTGTTACGCCCAGCCGT
GCGACATCTCGTAATTGCGGCTCCATGTGACCGTAACTCCTATCTAGCCGAGCTGCCTCGCTACC
GTCCGGCCCTCCTGCACCCCTATCTAACCTATCACAGTGGCCGTGTTCTTAAACCACTCATTGGT
GGTACGAGCACAAAGCCTTTCAACACCAAAACGCAACCAATACCGCCAAAAAACCCCACACCGAC
ACCACACCGACACCACACCGACACCACGACCCCTCACCCAGCCGCCCCGTGATCTCGCCCCCGCG
CTAACCGACGTTCTACCCCACCTCGTCCTTCTGTTTCATCTGGCC
Found at i:35854 original size:11 final size:11
Alignment explanation
Indices: 35838--35874 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
35828 CCAAAAAACC
35838 CCACACCGACA
1 CCACACCGACA
35849 CCACACCGACA
1 CCACACCGACA
35860 CCACACCGACA
1 CCACACCGACA
35871 CCAC
1 CCAC
35875 GACCCCTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.57, G:0.08, T:0.00
Consensus pattern (11 bp):
CCACACCGACA
Left flanking sequence: Indices 35338 -- 35837
CAGGTCTAGACTACACAGGTTAGAGTGATGCTGAGCACTACGCCGGAGTCGGTAGGTCGGCTGTC
ACATACAGCTGTCACAATCAGCTATCACATACAGCTGTCACAATCAGCTGTCACAAGCATTTGGA
CATTAACCTAATTATAATCAGTCATTGAGTAGCTCAGGGCGAGAATCTGTTCACACCCCTCGCAA
CCCAATTGCCTACCCTACCTAAGACTCTATCCACCGTCGTTCGCACTGCTTCACTAGCCACACAC
TGTCTGCGTCACTTTTGTCCGATTGTCCCTGCGTCTTTGTGTTACGCCCAGCCGTGCGACATCTC
GTAATTGCGGCTCCATGTGACCGTAACTCCTATCTAGCCGAGCTGCCTCGCTACCGTCCGGCCCT
CCTGCACCCCTATCTAACCTATCACAGTGGCCGTGTTCTTAAACCACTCATTGGTGGTACGAGCA
CAAAGCCTTTCAACACCAAAACGCAACCAATACCGCCAAAAAACC
Right flanking sequence: Indices 35875 -- 36374
GACCCCTCACCCAGCCGCCCCGTGATCTCGCCCCCGCGCTAACCGACGTTCTACCCCACCTCGTC
CTTCTGTTTCATCTGGCCGGTCCCGCCCCGCGCTCGTAACCCGCGCGTGCTCGCAACCTTCCCCG
CGAATATAAACTCCACCACCTAGGCACCCAAACCATGGCTCCCGGGAAGAAGGACGCCGACTCGA
CGCGCAAAATCGCCCAGGTGACGCGTGCGCTCGTGGCCTGTGACCTGTGTCGCAAGCTCAAGACA
CGCTGCCACCGCGACCCGACGCTGCTGCGATGCCTCCGGTGCAACACCCTCGACAAGCGGTGCTC
GCACGAGATCAACCCCGGGGGGGCCAATGGCGCTATCAGCAAGGAGGGCACCAAGAACCAGAGCC
AGGCACACAAGCTCGAGCTGCTACAGGCGTCGGTGGACAAGATTTTGGCGGTCTTGCTGCAAAAC
GACTACCCACGAGTGGAGTCCCGGCCGCGGTTCGAGGCGTCGAGC
Found at i:35860 original size:6 final size:6
Alignment explanation
Indices: 35840--35872 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
35830 AAAAAACCCC
35840 ACACCG ACACC- ACACCG ACACC- ACACCG ACACC
1 ACACCG ACACCG ACACCG ACACCG ACACCG ACACC
35873 ACGACCCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.36, C:0.55, G:0.09, T:0.00
Consensus pattern (6 bp):
ACACCG
Left flanking sequence: Indices 35340 -- 35839
GGTCTAGACTACACAGGTTAGAGTGATGCTGAGCACTACGCCGGAGTCGGTAGGTCGGCTGTCAC
ATACAGCTGTCACAATCAGCTATCACATACAGCTGTCACAATCAGCTGTCACAAGCATTTGGACA
TTAACCTAATTATAATCAGTCATTGAGTAGCTCAGGGCGAGAATCTGTTCACACCCCTCGCAACC
CAATTGCCTACCCTACCTAAGACTCTATCCACCGTCGTTCGCACTGCTTCACTAGCCACACACTG
TCTGCGTCACTTTTGTCCGATTGTCCCTGCGTCTTTGTGTTACGCCCAGCCGTGCGACATCTCGT
AATTGCGGCTCCATGTGACCGTAACTCCTATCTAGCCGAGCTGCCTCGCTACCGTCCGGCCCTCC
TGCACCCCTATCTAACCTATCACAGTGGCCGTGTTCTTAAACCACTCATTGGTGGTACGAGCACA
AAGCCTTTCAACACCAAAACGCAACCAATACCGCCAAAAAACCCC
Right flanking sequence: Indices 35873 -- 36372
ACGACCCCTCACCCAGCCGCCCCGTGATCTCGCCCCCGCGCTAACCGACGTTCTACCCCACCTCG
TCCTTCTGTTTCATCTGGCCGGTCCCGCCCCGCGCTCGTAACCCGCGCGTGCTCGCAACCTTCCC
CGCGAATATAAACTCCACCACCTAGGCACCCAAACCATGGCTCCCGGGAAGAAGGACGCCGACTC
GACGCGCAAAATCGCCCAGGTGACGCGTGCGCTCGTGGCCTGTGACCTGTGTCGCAAGCTCAAGA
CACGCTGCCACCGCGACCCGACGCTGCTGCGATGCCTCCGGTGCAACACCCTCGACAAGCGGTGC
TCGCACGAGATCAACCCCGGGGGGGCCAATGGCGCTATCAGCAAGGAGGGCACCAAGAACCAGAG
CCAGGCACACAAGCTCGAGCTGCTACAGGCGTCGGTGGACAAGATTTTGGCGGTCTTGCTGCAAA
ACGACTACCCACGAGTGGAGTCCCGGCCGCGGTTCGAGGCGTCGA
Found at i:37803 original size:25 final size:22
Alignment explanation
Indices: 37732--37791 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
37722 ATCACTGTGT
*
37732 GGTCTACTCTCTATCACCGGAC
1 GGTCTACTCTCTATCACTGGAC
*
37754 GGTCTAATCTCTATCACTGGAC
1 GGTCTACTCTCTATCACTGGAC
37776 GGTCTTACTCTCTATC
1 GGTC-TACTCTCTATC
37792 TCACTGGGCG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 24 0.71
23 10 0.29
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (22 bp):
GGTCTACTCTCTATCACTGGAC
Left flanking sequence: Indices 37232 -- 37731
GGAGAACTGGCAGCAGCTGTGGCTGCACTTGTTCTCGTTGCACCAGCTCGAGTTTGTCCGGCCCA
CCTTCCACTTCTGCGAGGTGGTGATGCGCCTCAAGCAGTGCCAGCTGCCCATGGAGCTTACGCTG
GACCCGGGCAACGAGCTGCGGATCCACACCGTGCTAGCGGCGTTGCTGGACGACGCCCGGGACGA
GGTGTGGACCCACGCGCTGCAGGTGCTTCAGATGGTGCACGAGATCGACCACGACTACTTTTCGC
ATGTGCTGGACCAGATCCAGTTCTTTTTCTTCTACTGTGCGTGGATGTGTCTCTGTATGCGCAGC
GACAAGACGCCTGATATCAGCGGTGACGTCGAGGCGTTGTGTGCGATGATGCGGGTGCTGGAGGG
GGACATTTTGGGCCGGTACTACTCGATCTTGGTGCGGTTGAACGAGGGGTACGAGGAGCGAGTGG
TGTAGGGTGGTGTCTGACTACAAGGACGGTCTACTATCACTGTGT
Right flanking sequence: Indices 37792 -- 38291
TCACTGGGCGGTTTTATCCTCACCTGGTTTGGTGGGGTGAGTAGGATACCGAGTTCACACTATAG
GTTGGTCTCTTACAGAGTATAAAGGAGAGAATGGGAAGAGAGAATGGGAAGAGAGAATGGGAAGA
GAGAATTGGGAAGAGAGAATGGGAAGAGAGAATTGGGAAGGAGAAAATTAGGAAGGAGAGAATTG
GGAGAGAATTAGGTTGGGTTGGTTTTTCGGTCGGTTCGGTCCTTTAATCGTGGTGGTCCTTTGGT
CGGGTTGCTCCTTCGGTCGGCCATTGACCTGGTAGTATCTACAGACTACGTTGTGCCACCAAAGT
GCCACCAACGTCTTCGTTGTTAGACGGTCCTTGGCAATCACCAACTTTGTACGTCTGAGTCACTC
TACTTGCAGCCAACCCTCGATGCGGTTGCGTAATTAACTCAAAGCGACTTCTCAATCCCACGACT
TCTCAATCCCGCGACTTATCAATCCCCAATTACCCTATTCTCTCC
Found at i:37899 original size:13 final size:13
Alignment explanation
Indices: 37881--37966 Score: 147
Period size: 13 Copynumber: 6.5 Consensus size: 13
37871 GAGTATAAAG
37881 GAGAGAATGGGAA
1 GAGAGAATGGGAA
37894 GAGAGAATGGGAA
1 GAGAGAATGGGAA
37907 GAGAGAATGGGAA
1 GAGAGAATGGGAA
37920 GAGAGAATTGGGAA
1 GAGAGAA-TGGGAA
37934 GAGAGAATGGGAA
1 GAGAGAATGGGAA
37947 GAGAGAATTGGGAA
1 GAGAGAA-TGGGAA
37961 G-GAGAA
1 GAGAGAA
37967 AATTAGGAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
13 51 0.72
14 20 0.28
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
GAGAGAATGGGAA
Left flanking sequence: Indices 37381 -- 37880
GGATCCACACCGTGCTAGCGGCGTTGCTGGACGACGCCCGGGACGAGGTGTGGACCCACGCGCTG
CAGGTGCTTCAGATGGTGCACGAGATCGACCACGACTACTTTTCGCATGTGCTGGACCAGATCCA
GTTCTTTTTCTTCTACTGTGCGTGGATGTGTCTCTGTATGCGCAGCGACAAGACGCCTGATATCA
GCGGTGACGTCGAGGCGTTGTGTGCGATGATGCGGGTGCTGGAGGGGGACATTTTGGGCCGGTAC
TACTCGATCTTGGTGCGGTTGAACGAGGGGTACGAGGAGCGAGTGGTGTAGGGTGGTGTCTGACT
ACAAGGACGGTCTACTATCACTGTGTGGTCTACTCTCTATCACCGGACGGTCTAATCTCTATCAC
TGGACGGTCTTACTCTCTATCTCACTGGGCGGTTTTATCCTCACCTGGTTTGGTGGGGTGAGTAG
GATACCGAGTTCACACTATAGGTTGGTCTCTTACAGAGTATAAAG
Right flanking sequence: Indices 37967 -- 38466
AATTAGGAAGGAGAGAATTGGGAGAGAATTAGGTTGGGTTGGTTTTTCGGTCGGTTCGGTCCTTT
AATCGTGGTGGTCCTTTGGTCGGGTTGCTCCTTCGGTCGGCCATTGACCTGGTAGTATCTACAGA
CTACGTTGTGCCACCAAAGTGCCACCAACGTCTTCGTTGTTAGACGGTCCTTGGCAATCACCAAC
TTTGTACGTCTGAGTCACTCTACTTGCAGCCAACCCTCGATGCGGTTGCGTAATTAACTCAAAGC
GACTTCTCAATCCCACGACTTCTCAATCCCGCGACTTATCAATCCCCAATTACCCTATTCTCTCC
ACAGCCCGCCCCTTTTCCCCCTTTCACCCTTCGACATTTTCGTGGCTTGGACCAAGCCTGCCTCG
CCTCGTCCCAACATTCTACCACTGACGCCATTCCCACTGCAATTGACAAATAACGGTTCACTGCG
TCTGCAGCGAATCAGCCCACCGAGCCTTTACCCGTGCCGGTGCGG
Found at i:37939 original size:27 final size:27
Alignment explanation
Indices: 37881--37993 Score: 167
Period size: 27 Copynumber: 4.1 Consensus size: 27
37871 GAGTATAAAG
37881 GAGAGAATGGGAAGAGAGAA-TGGGAA
1 GAGAGAATGGGAAGAGAGAATTGGGAA
37907 GAGAGAATGGGAAGAGAGAATTGGGAA
1 GAGAGAATGGGAAGAGAGAATTGGGAA
37934 GAGAGAATGGGAAGAGAGAATTGGGAA
1 GAGAGAATGGGAAGAGAGAATTGGGAA
* *
37961 GGAGAAAATTAGGAAGGAGAGAATTGGG-A
1 -GAGAGAA-TGGGAA-GAGAGAATTGGGAA
37990 GAGA
1 GAGA
37994 ATTAGGTTGG
Statistics
Matches: 81, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
26 20 0.25
27 33 0.41
28 10 0.12
29 6 0.07
30 12 0.15
ACGTcount: A:0.45, C:0.00, G:0.44, T:0.11
Consensus pattern (27 bp):
GAGAGAATGGGAAGAGAGAATTGGGAA
Left flanking sequence: Indices 37381 -- 37880
GGATCCACACCGTGCTAGCGGCGTTGCTGGACGACGCCCGGGACGAGGTGTGGACCCACGCGCTG
CAGGTGCTTCAGATGGTGCACGAGATCGACCACGACTACTTTTCGCATGTGCTGGACCAGATCCA
GTTCTTTTTCTTCTACTGTGCGTGGATGTGTCTCTGTATGCGCAGCGACAAGACGCCTGATATCA
GCGGTGACGTCGAGGCGTTGTGTGCGATGATGCGGGTGCTGGAGGGGGACATTTTGGGCCGGTAC
TACTCGATCTTGGTGCGGTTGAACGAGGGGTACGAGGAGCGAGTGGTGTAGGGTGGTGTCTGACT
ACAAGGACGGTCTACTATCACTGTGTGGTCTACTCTCTATCACCGGACGGTCTAATCTCTATCAC
TGGACGGTCTTACTCTCTATCTCACTGGGCGGTTTTATCCTCACCTGGTTTGGTGGGGTGAGTAG
GATACCGAGTTCACACTATAGGTTGGTCTCTTACAGAGTATAAAG
Right flanking sequence: Indices 37994 -- 38493
ATTAGGTTGGGTTGGTTTTTCGGTCGGTTCGGTCCTTTAATCGTGGTGGTCCTTTGGTCGGGTTG
CTCCTTCGGTCGGCCATTGACCTGGTAGTATCTACAGACTACGTTGTGCCACCAAAGTGCCACCA
ACGTCTTCGTTGTTAGACGGTCCTTGGCAATCACCAACTTTGTACGTCTGAGTCACTCTACTTGC
AGCCAACCCTCGATGCGGTTGCGTAATTAACTCAAAGCGACTTCTCAATCCCACGACTTCTCAAT
CCCGCGACTTATCAATCCCCAATTACCCTATTCTCTCCACAGCCCGCCCCTTTTCCCCCTTTCAC
CCTTCGACATTTTCGTGGCTTGGACCAAGCCTGCCTCGCCTCGTCCCAACATTCTACCACTGACG
CCATTCCCACTGCAATTGACAAATAACGGTTCACTGCGTCTGCAGCGAATCAGCCCACCGAGCCT
TTACCCGTGCCGGTGCGGCTGATCCGTCACAAATCCGGGCCGACC
Found at i:38247 original size:16 final size:16
Alignment explanation
Indices: 38226--38272 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
38216 TAACTCAAAG
38226 CGACTTCTCAATCCCA
1 CGACTTCTCAATCCCA
*
38242 CGACTTCTCAATCCCG
1 CGACTTCTCAATCCCA
*
38258 CGACTTATCAATCCC
1 CGACTTCTCAATCCC
38273 CAATTACCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.23, C:0.43, G:0.09, T:0.26
Consensus pattern (16 bp):
CGACTTCTCAATCCCA
Left flanking sequence: Indices 37726 -- 38225
CTGTGTGGTCTACTCTCTATCACCGGACGGTCTAATCTCTATCACTGGACGGTCTTACTCTCTAT
CTCACTGGGCGGTTTTATCCTCACCTGGTTTGGTGGGGTGAGTAGGATACCGAGTTCACACTATA
GGTTGGTCTCTTACAGAGTATAAAGGAGAGAATGGGAAGAGAGAATGGGAAGAGAGAATGGGAAG
AGAGAATTGGGAAGAGAGAATGGGAAGAGAGAATTGGGAAGGAGAAAATTAGGAAGGAGAGAATT
GGGAGAGAATTAGGTTGGGTTGGTTTTTCGGTCGGTTCGGTCCTTTAATCGTGGTGGTCCTTTGG
TCGGGTTGCTCCTTCGGTCGGCCATTGACCTGGTAGTATCTACAGACTACGTTGTGCCACCAAAG
TGCCACCAACGTCTTCGTTGTTAGACGGTCCTTGGCAATCACCAACTTTGTACGTCTGAGTCACT
CTACTTGCAGCCAACCCTCGATGCGGTTGCGTAATTAACTCAAAG
Right flanking sequence: Indices 38273 -- 38772
CAATTACCCTATTCTCTCCACAGCCCGCCCCTTTTCCCCCTTTCACCCTTCGACATTTTCGTGGC
TTGGACCAAGCCTGCCTCGCCTCGTCCCAACATTCTACCACTGACGCCATTCCCACTGCAATTGA
CAAATAACGGTTCACTGCGTCTGCAGCGAATCAGCCCACCGAGCCTTTACCCGTGCCGGTGCGGC
TGATCCGTCACAAATCCGGGCCGACCACCGCGAGTCCGGGGTTTGGACCACGTACCCCACGATAA
ACACCGATAAACACCCACACAAACACCACACAAACACCACACAAACACCCACACAAACAAGTAAA
TCAAACACACCTCACAATTACCTATGCACCACCCGCTACCATTATGCCACCTCACCGACACCGGG
ATTGTGAGCCCGCCACCTCACGTGCAACTCCGCCATTTGGTTGCCCAATAACGGGGTATAAATAG
GTTAATCCCAATAACTACCGCAATGGCTCCCTCTCACTTCGACAC
Found at i:38563 original size:11 final size:12
Alignment explanation
Indices: 38541--38591 Score: 88
Period size: 11 Copynumber: 4.4 Consensus size: 12
38531 AAACACCGAT
38541 AAACACCCACAC
1 AAACACCCACAC
38553 AAACA-CCACAC
1 AAACACCCACAC
38564 AAACA-CCACAC
1 AAACACCCACAC
38575 AAACACCCACAC
1 AAACACCCACAC
38587 AAACA
1 AAACA
38592 AGTAAATCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 22 0.58
12 16 0.42
ACGTcount: A:0.55, C:0.45, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACACCCACAC
Left flanking sequence: Indices 38041 -- 38540
GGTCCTTTGGTCGGGTTGCTCCTTCGGTCGGCCATTGACCTGGTAGTATCTACAGACTACGTTGT
GCCACCAAAGTGCCACCAACGTCTTCGTTGTTAGACGGTCCTTGGCAATCACCAACTTTGTACGT
CTGAGTCACTCTACTTGCAGCCAACCCTCGATGCGGTTGCGTAATTAACTCAAAGCGACTTCTCA
ATCCCACGACTTCTCAATCCCGCGACTTATCAATCCCCAATTACCCTATTCTCTCCACAGCCCGC
CCCTTTTCCCCCTTTCACCCTTCGACATTTTCGTGGCTTGGACCAAGCCTGCCTCGCCTCGTCCC
AACATTCTACCACTGACGCCATTCCCACTGCAATTGACAAATAACGGTTCACTGCGTCTGCAGCG
AATCAGCCCACCGAGCCTTTACCCGTGCCGGTGCGGCTGATCCGTCACAAATCCGGGCCGACCAC
CGCGAGTCCGGGGTTTGGACCACGTACCCCACGATAAACACCGAT
Right flanking sequence: Indices 38592 -- 39091
AGTAAATCAAACACACCTCACAATTACCTATGCACCACCCGCTACCATTATGCCACCTCACCGAC
ACCGGGATTGTGAGCCCGCCACCTCACGTGCAACTCCGCCATTTGGTTGCCCAATAACGGGGTAT
AAATAGGTTAATCCCAATAACTACCGCAATGGCTCCCTCTCACTTCGACACCCTCCAATTGCACG
CTGGCCAGCCCGTGGAGAAGCCCCACGGCGCCCGCGCCCCCCCGATCTACGCCACCACCTCGTAC
GTGTTTGACGACTCGAAGCACGGGGCCCAGTTGTTCGGGCTCGAGAAGCCGGGGATGATCTACTC
GCGGATCATGAACCCCACCAACGACGTGTTTGAGCAGAGAATGGCCGAGCTCGAGGGCGGGATCG
GTGCGTTGGCGTGCTCGTCGGGCCAGCTGGCCCAGTTCTTGGCGGTGGCCGGGTTGGCCCACGCC
GGCGACAACATCGTGTCGCTGACCTACTTGTACGGCGGCACCTAC
Found at i:38567 original size:23 final size:23
Alignment explanation
Indices: 38541--38591 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 23
38531 AAACACCGAT
38541 AAACACCCACACAAACA-CCACAC
1 AAACA-CCACACAAACACCCACAC
38564 AAACACCACACAAACACCCACAC
1 AAACACCACACAAACACCCACAC
38587 AAACA
1 AAACA
38592 AGTAAATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.55, C:0.45, G:0.00, T:0.00
Consensus pattern (23 bp):
AAACACCACACAAACACCCACAC
Left flanking sequence: Indices 38041 -- 38540
GGTCCTTTGGTCGGGTTGCTCCTTCGGTCGGCCATTGACCTGGTAGTATCTACAGACTACGTTGT
GCCACCAAAGTGCCACCAACGTCTTCGTTGTTAGACGGTCCTTGGCAATCACCAACTTTGTACGT
CTGAGTCACTCTACTTGCAGCCAACCCTCGATGCGGTTGCGTAATTAACTCAAAGCGACTTCTCA
ATCCCACGACTTCTCAATCCCGCGACTTATCAATCCCCAATTACCCTATTCTCTCCACAGCCCGC
CCCTTTTCCCCCTTTCACCCTTCGACATTTTCGTGGCTTGGACCAAGCCTGCCTCGCCTCGTCCC
AACATTCTACCACTGACGCCATTCCCACTGCAATTGACAAATAACGGTTCACTGCGTCTGCAGCG
AATCAGCCCACCGAGCCTTTACCCGTGCCGGTGCGGCTGATCCGTCACAAATCCGGGCCGACCAC
CGCGAGTCCGGGGTTTGGACCACGTACCCCACGATAAACACCGAT
Right flanking sequence: Indices 38592 -- 39091
AGTAAATCAAACACACCTCACAATTACCTATGCACCACCCGCTACCATTATGCCACCTCACCGAC
ACCGGGATTGTGAGCCCGCCACCTCACGTGCAACTCCGCCATTTGGTTGCCCAATAACGGGGTAT
AAATAGGTTAATCCCAATAACTACCGCAATGGCTCCCTCTCACTTCGACACCCTCCAATTGCACG
CTGGCCAGCCCGTGGAGAAGCCCCACGGCGCCCGCGCCCCCCCGATCTACGCCACCACCTCGTAC
GTGTTTGACGACTCGAAGCACGGGGCCCAGTTGTTCGGGCTCGAGAAGCCGGGGATGATCTACTC
GCGGATCATGAACCCCACCAACGACGTGTTTGAGCAGAGAATGGCCGAGCTCGAGGGCGGGATCG
GTGCGTTGGCGTGCTCGTCGGGCCAGCTGGCCCAGTTCTTGGCGGTGGCCGGGTTGGCCCACGCC
GGCGACAACATCGTGTCGCTGACCTACTTGTACGGCGGCACCTAC
Found at i:40163 original size:16 final size:16
Alignment explanation
Indices: 40144--40390 Score: 203
Period size: 16 Copynumber: 14.7 Consensus size: 16
40134 AGACTGACAG
40144 GAGAGACTGGAGAGTA
1 GAGAGACTGGAGAGTA
*
40160 GAGAGAATGGAGAGTA
1 GAGAGACTGGAGAGTA
*
40176 TAGAGACTGGAGAGTA
1 GAGAGACTGGAGAGTA
40192 GAGAGACTGGAGAGTA
1 GAGAGACTGGAGAGTA
*
40208 GAGACA-T-GAGAGTA
1 GAGAGACTGGAGAGTA
*
40222 GAGAGAATGGAGAGTATAGA
1 GAGAGACTGGAGAG--T--A
*
40242 GACTGGAGAGTGGAGAGTA
1 GA---GAGACTGGAGAGTA
* *
40261 GAGAGAATGGAGTGTA
1 GAGAGACTGGAGAGTA
* *
40277 TAGAGACTGGAGACTA
1 GAGAGACTGGAGAGTA
* *
40293 GAGTGACTGGATAGTA
1 GAGAGACTGGAGAGTA
* *
40309 GAGAGACTGGTGAGATT
1 GAGAGACTGGAGAG-TA
*
40326 GA-AGAGTGGAGAGTA
1 GAGAGACTGGAGAGTA
40341 GAGAGACTGGAAAGTGGAGATTA
1 GAGAGACTGG--A---GAG--TA
*
40364 GAGAGACTGGAGACTA
1 GAGAGACTGGAGAGTA
40380 GAGAGACTGGA
1 GAGAGACTGGA
40391 CAATAGGCAT
Statistics
Matches: 187, Mismatches: 26, Indels: 36
0.75 0.10 0.14
Matches are distributed among these distances:
14 12 0.06
15 5 0.03
16 129 0.69
17 3 0.02
18 4 0.02
19 3 0.02
20 3 0.02
21 5 0.03
23 23 0.12
ACGTcount: A:0.38, C:0.05, G:0.41, T:0.16
Consensus pattern (16 bp):
GAGAGACTGGAGAGTA
Left flanking sequence: Indices 39644 -- 40143
TCTTACAACGCCGCCAAGCTCTCGCAGTGGCTTGAGAAGCACCCCAACGTGGACTCGGTGCTGTA
CCTCGGGTTGGCGTCGCACCCCACCCACGAGTTGGCCAAGAAGTACCTCAACAACCAGGAGAACT
TTGGCGGTGCGTTGACTTTCTCGGTCAAGGACTTGCCCACCAAGTCGGACGACCCCTTCCAGGAG
GCTGCTGCCAAGTTTGTCGACCTGTTGAAGATCGCCTCCAACCTTGCCAACGTGGGTGACTCCAA
GACGTTGGTGATTGCGCCTTGGTACACCACCCACCAGCAGTTGGCGGACGACGAGAAGAAGGCTT
CGGGGGTGACCCCTGGGATGATCAGAGTGTCGATCGGTACCGAGTTTATTGACGACATTATTGAT
GACTTTGACCAGGCGTTCAAGACCGTCTACGGTAACTAGAGAATAGACAAGTGCTAGAAGAGTGA
GGGTGAGAGTGGAGAGAGTAGAGAGACTGGAGACTAGACTGACAG
Right flanking sequence: Indices 40391 -- 40890
CAATAGGCATTTGAAGAGGTAAAACTGTGGACCTTGGACAACAATAAGCCTTGTTTACAACAGTG
TGAGAATGTAGTGAAAACCAGAGTACAATAGAGTTCCTCGGGTACAATAGAGTTCTCGGGCAACG
GGGCTGGGTACAGTAGCCTCCTCCGAGTTTCTCAGGACAATAGAGTTCTGAGGACGCATACCGGG
CTAGGAAGTCCAGCCATGCTCGACCACCACGCAGTAGAGACAATAAGCACTAGGCGATTGCGAAC
CACTTTGAGGAAGCACGCTGTTTTCAAGTACGCTGGTTCCTTCGTTACCACTTCCCAGCACTCCG
CCAAGATCCCCGCCGGCCCTGTTGGCCCTGTTGGCCCTGTTGGGCGTTTCAGCCATGTTTCAGAC
ACTTCATGCATGATGAGGTATCCCATCGGTCGTATCCGGCTCCCTTCGCGGACCAGACGGTAACG
CTAAATCCCGTTTGGGTCAGGGGTCCCGACAAAACCCCTGAAAGA
Found at i:40278 original size:39 final size:39
Alignment explanation
Indices: 40215--40289 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
40205 GTAGAGACAT
40215 GAGAGTAGAGAGAATGGAGAGTATAGAGACTGGAGAGTG
1 GAGAGTAGAGAGAATGGAGAGTATAGAGACTGGAGAGTG
*
40254 GAGAGTAGAGAGAATGGAGTGTATAGAGACTGGAGA
1 GAGAGTAGAGAGAATGGAGAGTATAGAGACTGGAGA
40290 CTAGAGTGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.39, C:0.03, G:0.43, T:0.16
Consensus pattern (39 bp):
GAGAGTAGAGAGAATGGAGAGTATAGAGACTGGAGAGTG
Left flanking sequence: Indices 39715 -- 40214
GTTGGCGTCGCACCCCACCCACGAGTTGGCCAAGAAGTACCTCAACAACCAGGAGAACTTTGGCG
GTGCGTTGACTTTCTCGGTCAAGGACTTGCCCACCAAGTCGGACGACCCCTTCCAGGAGGCTGCT
GCCAAGTTTGTCGACCTGTTGAAGATCGCCTCCAACCTTGCCAACGTGGGTGACTCCAAGACGTT
GGTGATTGCGCCTTGGTACACCACCCACCAGCAGTTGGCGGACGACGAGAAGAAGGCTTCGGGGG
TGACCCCTGGGATGATCAGAGTGTCGATCGGTACCGAGTTTATTGACGACATTATTGATGACTTT
GACCAGGCGTTCAAGACCGTCTACGGTAACTAGAGAATAGACAAGTGCTAGAAGAGTGAGGGTGA
GAGTGGAGAGAGTAGAGAGACTGGAGACTAGACTGACAGGAGAGACTGGAGAGTAGAGAGAATGG
AGAGTATAGAGACTGGAGAGTAGAGAGACTGGAGAGTAGAGACAT
Right flanking sequence: Indices 40290 -- 40789
CTAGAGTGACTGGATAGTAGAGAGACTGGTGAGATTGAAGAGTGGAGAGTAGAGAGACTGGAAAG
TGGAGATTAGAGAGACTGGAGACTAGAGAGACTGGACAATAGGCATTTGAAGAGGTAAAACTGTG
GACCTTGGACAACAATAAGCCTTGTTTACAACAGTGTGAGAATGTAGTGAAAACCAGAGTACAAT
AGAGTTCCTCGGGTACAATAGAGTTCTCGGGCAACGGGGCTGGGTACAGTAGCCTCCTCCGAGTT
TCTCAGGACAATAGAGTTCTGAGGACGCATACCGGGCTAGGAAGTCCAGCCATGCTCGACCACCA
CGCAGTAGAGACAATAAGCACTAGGCGATTGCGAACCACTTTGAGGAAGCACGCTGTTTTCAAGT
ACGCTGGTTCCTTCGTTACCACTTCCCAGCACTCCGCCAAGATCCCCGCCGGCCCTGTTGGCCCT
GTTGGCCCTGTTGGGCGTTTCAGCCATGTTTCAGACACTTCATGC
Found at i:40346 original size:23 final size:23
Alignment explanation
Indices: 40330--40374 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
40320 GAGATTGAAG
40330 AGTGGAGAGTAGAGAGACTGGAA
1 AGTGGAGAGTAGAGAGACTGGAA
*
40353 AGTGGAGATTAGAGAGACTGGA
1 AGTGGAGAGTAGAGAGACTGGA
40375 GACTAGAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.42, T:0.16
Consensus pattern (23 bp):
AGTGGAGAGTAGAGAGACTGGAA
Left flanking sequence: Indices 39830 -- 40329
TTCCAGGAGGCTGCTGCCAAGTTTGTCGACCTGTTGAAGATCGCCTCCAACCTTGCCAACGTGGG
TGACTCCAAGACGTTGGTGATTGCGCCTTGGTACACCACCCACCAGCAGTTGGCGGACGACGAGA
AGAAGGCTTCGGGGGTGACCCCTGGGATGATCAGAGTGTCGATCGGTACCGAGTTTATTGACGAC
ATTATTGATGACTTTGACCAGGCGTTCAAGACCGTCTACGGTAACTAGAGAATAGACAAGTGCTA
GAAGAGTGAGGGTGAGAGTGGAGAGAGTAGAGAGACTGGAGACTAGACTGACAGGAGAGACTGGA
GAGTAGAGAGAATGGAGAGTATAGAGACTGGAGAGTAGAGAGACTGGAGAGTAGAGACATGAGAG
TAGAGAGAATGGAGAGTATAGAGACTGGAGAGTGGAGAGTAGAGAGAATGGAGTGTATAGAGACT
GGAGACTAGAGTGACTGGATAGTAGAGAGACTGGTGAGATTGAAG
Right flanking sequence: Indices 40375 -- 40874
GACTAGAGAGACTGGACAATAGGCATTTGAAGAGGTAAAACTGTGGACCTTGGACAACAATAAGC
CTTGTTTACAACAGTGTGAGAATGTAGTGAAAACCAGAGTACAATAGAGTTCCTCGGGTACAATA
GAGTTCTCGGGCAACGGGGCTGGGTACAGTAGCCTCCTCCGAGTTTCTCAGGACAATAGAGTTCT
GAGGACGCATACCGGGCTAGGAAGTCCAGCCATGCTCGACCACCACGCAGTAGAGACAATAAGCA
CTAGGCGATTGCGAACCACTTTGAGGAAGCACGCTGTTTTCAAGTACGCTGGTTCCTTCGTTACC
ACTTCCCAGCACTCCGCCAAGATCCCCGCCGGCCCTGTTGGCCCTGTTGGCCCTGTTGGGCGTTT
CAGCCATGTTTCAGACACTTCATGCATGATGAGGTATCCCATCGGTCGTATCCGGCTCCCTTCGC
GGACCAGACGGTAACGCTAAATCCCGTTTGGGTCAGGGGTCCCGA
Found at i:40383 original size:23 final size:23
Alignment explanation
Indices: 40334--40384 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
40324 TTGAAGAGTG
* *
40334 GAGAGTAGAGAGACTGGAAAGTG
1 GAGAGTAGAGAGACTGGAAACTA
* *
40357 GAGATTAGAGAGACTGGAGACTA
1 GAGAGTAGAGAGACTGGAAACTA
40380 GAGAG
1 GAGAG
40385 ACTGGACAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.41, T:0.14
Consensus pattern (23 bp):
GAGAGTAGAGAGACTGGAAACTA
Left flanking sequence: Indices 39834 -- 40333
AGGAGGCTGCTGCCAAGTTTGTCGACCTGTTGAAGATCGCCTCCAACCTTGCCAACGTGGGTGAC
TCCAAGACGTTGGTGATTGCGCCTTGGTACACCACCCACCAGCAGTTGGCGGACGACGAGAAGAA
GGCTTCGGGGGTGACCCCTGGGATGATCAGAGTGTCGATCGGTACCGAGTTTATTGACGACATTA
TTGATGACTTTGACCAGGCGTTCAAGACCGTCTACGGTAACTAGAGAATAGACAAGTGCTAGAAG
AGTGAGGGTGAGAGTGGAGAGAGTAGAGAGACTGGAGACTAGACTGACAGGAGAGACTGGAGAGT
AGAGAGAATGGAGAGTATAGAGACTGGAGAGTAGAGAGACTGGAGAGTAGAGACATGAGAGTAGA
GAGAATGGAGAGTATAGAGACTGGAGAGTGGAGAGTAGAGAGAATGGAGTGTATAGAGACTGGAG
ACTAGAGTGACTGGATAGTAGAGAGACTGGTGAGATTGAAGAGTG
Right flanking sequence: Indices 40385 -- 40884
ACTGGACAATAGGCATTTGAAGAGGTAAAACTGTGGACCTTGGACAACAATAAGCCTTGTTTACA
ACAGTGTGAGAATGTAGTGAAAACCAGAGTACAATAGAGTTCCTCGGGTACAATAGAGTTCTCGG
GCAACGGGGCTGGGTACAGTAGCCTCCTCCGAGTTTCTCAGGACAATAGAGTTCTGAGGACGCAT
ACCGGGCTAGGAAGTCCAGCCATGCTCGACCACCACGCAGTAGAGACAATAAGCACTAGGCGATT
GCGAACCACTTTGAGGAAGCACGCTGTTTTCAAGTACGCTGGTTCCTTCGTTACCACTTCCCAGC
ACTCCGCCAAGATCCCCGCCGGCCCTGTTGGCCCTGTTGGCCCTGTTGGGCGTTTCAGCCATGTT
TCAGACACTTCATGCATGATGAGGTATCCCATCGGTCGTATCCGGCTCCCTTCGCGGACCAGACG
GTAACGCTAAATCCCGTTTGGGTCAGGGGTCCCGACAAAACCCCT
Found at i:40515 original size:18 final size:19
Alignment explanation
Indices: 40478--40515 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
40468 GAAAACCAGA
40478 GTACAATAGAGTTCCTCGG
1 GTACAATAGAGTTCCTCGG
40497 GTACAATAGAGTT-CTCGG
1 GTACAATAGAGTTCCTCGG
40515 G
1 G
40516 CAACGGGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (19 bp):
GTACAATAGAGTTCCTCGG
Left flanking sequence: Indices 39978 -- 40477
CCCCTGGGATGATCAGAGTGTCGATCGGTACCGAGTTTATTGACGACATTATTGATGACTTTGAC
CAGGCGTTCAAGACCGTCTACGGTAACTAGAGAATAGACAAGTGCTAGAAGAGTGAGGGTGAGAG
TGGAGAGAGTAGAGAGACTGGAGACTAGACTGACAGGAGAGACTGGAGAGTAGAGAGAATGGAGA
GTATAGAGACTGGAGAGTAGAGAGACTGGAGAGTAGAGACATGAGAGTAGAGAGAATGGAGAGTA
TAGAGACTGGAGAGTGGAGAGTAGAGAGAATGGAGTGTATAGAGACTGGAGACTAGAGTGACTGG
ATAGTAGAGAGACTGGTGAGATTGAAGAGTGGAGAGTAGAGAGACTGGAAAGTGGAGATTAGAGA
GACTGGAGACTAGAGAGACTGGACAATAGGCATTTGAAGAGGTAAAACTGTGGACCTTGGACAAC
AATAAGCCTTGTTTACAACAGTGTGAGAATGTAGTGAAAACCAGA
Right flanking sequence: Indices 40516 -- 41015
CAACGGGGCTGGGTACAGTAGCCTCCTCCGAGTTTCTCAGGACAATAGAGTTCTGAGGACGCATA
CCGGGCTAGGAAGTCCAGCCATGCTCGACCACCACGCAGTAGAGACAATAAGCACTAGGCGATTG
CGAACCACTTTGAGGAAGCACGCTGTTTTCAAGTACGCTGGTTCCTTCGTTACCACTTCCCAGCA
CTCCGCCAAGATCCCCGCCGGCCCTGTTGGCCCTGTTGGCCCTGTTGGGCGTTTCAGCCATGTTT
CAGACACTTCATGCATGATGAGGTATCCCATCGGTCGTATCCGGCTCCCTTCGCGGACCAGACGG
TAACGCTAAATCCCGTTTGGGTCAGGGGTCCCGACAAAACCCCTGAAAGACCCACCACCTCGCTC
TCGCTCTACATCTCGTAAACAGCCACCGGTGCCCGCCCCACCCTCGCTTTCCCTGTTCGTCCCGA
CGCCCGCCCGACGTAATCGTGCCTCGACCTACGTTTTTCTCGCAG
Found at i:40744 original size:9 final size:9
Alignment explanation
Indices: 40730--40758 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
40720 GATCCCCGCC
40730 GGCCCTGTT
1 GGCCCTGTT
40739 GGCCCTGTT
1 GGCCCTGTT
40748 GGCCCTGTT
1 GGCCCTGTT
40757 GG
1 GG
40759 GCGTTTCAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.38, T:0.31
Consensus pattern (9 bp):
GGCCCTGTT
Left flanking sequence: Indices 40230 -- 40729
GGAGAGTATAGAGACTGGAGAGTGGAGAGTAGAGAGAATGGAGTGTATAGAGACTGGAGACTAGA
GTGACTGGATAGTAGAGAGACTGGTGAGATTGAAGAGTGGAGAGTAGAGAGACTGGAAAGTGGAG
ATTAGAGAGACTGGAGACTAGAGAGACTGGACAATAGGCATTTGAAGAGGTAAAACTGTGGACCT
TGGACAACAATAAGCCTTGTTTACAACAGTGTGAGAATGTAGTGAAAACCAGAGTACAATAGAGT
TCCTCGGGTACAATAGAGTTCTCGGGCAACGGGGCTGGGTACAGTAGCCTCCTCCGAGTTTCTCA
GGACAATAGAGTTCTGAGGACGCATACCGGGCTAGGAAGTCCAGCCATGCTCGACCACCACGCAG
TAGAGACAATAAGCACTAGGCGATTGCGAACCACTTTGAGGAAGCACGCTGTTTTCAAGTACGCT
GGTTCCTTCGTTACCACTTCCCAGCACTCCGCCAAGATCCCCGCC
Right flanking sequence: Indices 40759 -- 41258
GCGTTTCAGCCATGTTTCAGACACTTCATGCATGATGAGGTATCCCATCGGTCGTATCCGGCTCC
CTTCGCGGACCAGACGGTAACGCTAAATCCCGTTTGGGTCAGGGGTCCCGACAAAACCCCTGAAA
GACCCACCACCTCGCTCTCGCTCTACATCTCGTAAACAGCCACCGGTGCCCGCCCCACCCTCGCT
TTCCCTGTTCGTCCCGACGCCCGCCCGACGTAATCGTGCCTCGACCTACGTTTTTCTCGCAGGGA
GCCCAGACGTGTTGTTTACCCTGTTTCACCACGAGCCGAGCCCCTCGCGTAGAATGCGCCGGGCA
GACACCGTCCCGGCCCGACATTCCGGAGCGAGCCACGGTGGCGGTCGTCGTCGCGGGTGGGCCGC
ACTGACCTTCCCCATGCGTCGCAAAGCTTAATTAGATACGTCGGAGCCACACACGTAGACCGAGC
CCACAATGGCTCCACCACGCCCGTCCAGGCCACCACACCCCACTG
Found at i:41985 original size:4 final size:4
Alignment explanation
Indices: 41972--42031 Score: 54
Period size: 4 Copynumber: 15.0 Consensus size: 4
41962 AGGCGAGTGT
*
41972 GTGG GT-G GTGG GT-G GTGG TTTGG GT-G GTGG GTGG TGTGG GTGG CGTGG
1 GTGG GTGG GTGG GTGG GTGG -GTGG GTGG GTGG GTGG -GTGG GTGG -GTGG
*
42020 GTGG TTGG GTGG
1 GTGG GTGG GTGG
42032 ATGCGGGGTG
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
3 9 0.20
4 26 0.57
5 11 0.24
ACGTcount: A:0.00, C:0.02, G:0.67, T:0.32
Consensus pattern (4 bp):
GTGG
Left flanking sequence: Indices 41472 -- 41971
GCACGTTGCGGCAGTGGTTCCGCGACGGCCGAGGGCCCCTGGGCAAGGTGGCGGTGGTGGACGTG
CGCGACTCCGATTTTATGGGGGGGCACATCCGTGGGTGCTTGCACTTCCCCAGTGGCGAGTTGCC
CGACCGGATGCCCGAGTTGCAGAAGCAGATCTTGGACATGGACGCCCGCGACGTGGTGTTCCACT
GTGCCCTCAGCCAGGTGCGGGGCCCGCTGTCCACCCTCAAGTTTTTACGGGCCAATGCGGCGGGG
CTGGACGACCGCCTCAAGGTGTTGCGGGTGTATGTGCTCAAGGGCGGGTTTACGCGGTGGCAGCA
GGACTACGGCGAGGACTCCGAGGTGACCGAGGGGTATAATAAGCAGTTGTGGCAGGCTGAGTTTT
AGGGCGTTACGGTGGCTGAGCTGCCTACGGTATGTGGTTTATAGAAAGGGCTGTGCCCGGATGGA
CATTAATATAGGATCTGGTGATGTTGACAGAGTGTAGGCGAGTGT
Right flanking sequence: Indices 42032 -- 42531
ATGCGGGGTGACTGCGGGTCTCGTATGCGATGCTGGTACAAACAGAATACGAGGGTCATGTGAAT
GTATCTGGCATTGGGATCTATGGTCGCAGGAACTACTGCGGGTGGACGAGAAGGGAAGGATGGTG
GGTGGGTGGGGTGTGGGAATGGTGGGAATGGTGGGAATGTGTAGTATTAGGGTTTTGGGGTTGTT
GGCTGTTCTATGGTTGTGACGGTTTTGATGTTCCGTGTTTTGTGTAGTTTGAGAAGCGTCTACAG
AGCGTCTACAAGGCGTCCACAGTTGGTGGGGATGGCTCTGGTGGTGCAAAAATCGGGGAGTGATT
ATGGTCCAAAAAGTGGTTAGCTGATTACTGTCTTCTCGACGGTTCGCATGCATCGCTCACTTGCT
CGATGTTCCCCCCATTGACGGGAATTCCCGTCCGACTAATGCCCAAGTAGCCAAGCTTAATGTTT
CGTGGTGCGAATGGAACCTAGACCGCAAAAGAAAGGAGAACAATA
Found at i:41999 original size:9 final size:8
Alignment explanation
Indices: 41972--42031 Score: 54
Period size: 9 Copynumber: 7.5 Consensus size: 8
41962 AGGCGAGTGT
41972 GTGGGT-G
1 GTGGGTGG
41979 GTGGGT-G
1 GTGGGTGG
*
41986 GTGGTTTGG
1 GTGG-GTGG
41995 GT-GGTGG
1 GTGGGTGG
42002 GTGGTGTGG
1 GTGG-GTGG
42011 GTGGCGTGG
1 GTGG-GTGG
*
42020 GTGGTTGG
1 GTGGGTGG
42028 GTGG
1 GTGG
42032 ATGCGGGGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
7 16 0.36
8 10 0.22
9 19 0.42
ACGTcount: A:0.00, C:0.02, G:0.67, T:0.32
Consensus pattern (8 bp):
GTGGGTGG
Left flanking sequence: Indices 41472 -- 41971
GCACGTTGCGGCAGTGGTTCCGCGACGGCCGAGGGCCCCTGGGCAAGGTGGCGGTGGTGGACGTG
CGCGACTCCGATTTTATGGGGGGGCACATCCGTGGGTGCTTGCACTTCCCCAGTGGCGAGTTGCC
CGACCGGATGCCCGAGTTGCAGAAGCAGATCTTGGACATGGACGCCCGCGACGTGGTGTTCCACT
GTGCCCTCAGCCAGGTGCGGGGCCCGCTGTCCACCCTCAAGTTTTTACGGGCCAATGCGGCGGGG
CTGGACGACCGCCTCAAGGTGTTGCGGGTGTATGTGCTCAAGGGCGGGTTTACGCGGTGGCAGCA
GGACTACGGCGAGGACTCCGAGGTGACCGAGGGGTATAATAAGCAGTTGTGGCAGGCTGAGTTTT
AGGGCGTTACGGTGGCTGAGCTGCCTACGGTATGTGGTTTATAGAAAGGGCTGTGCCCGGATGGA
CATTAATATAGGATCTGGTGATGTTGACAGAGTGTAGGCGAGTGT
Right flanking sequence: Indices 42032 -- 42531
ATGCGGGGTGACTGCGGGTCTCGTATGCGATGCTGGTACAAACAGAATACGAGGGTCATGTGAAT
GTATCTGGCATTGGGATCTATGGTCGCAGGAACTACTGCGGGTGGACGAGAAGGGAAGGATGGTG
GGTGGGTGGGGTGTGGGAATGGTGGGAATGGTGGGAATGTGTAGTATTAGGGTTTTGGGGTTGTT
GGCTGTTCTATGGTTGTGACGGTTTTGATGTTCCGTGTTTTGTGTAGTTTGAGAAGCGTCTACAG
AGCGTCTACAAGGCGTCCACAGTTGGTGGGGATGGCTCTGGTGGTGCAAAAATCGGGGAGTGATT
ATGGTCCAAAAAGTGGTTAGCTGATTACTGTCTTCTCGACGGTTCGCATGCATCGCTCACTTGCT
CGATGTTCCCCCCATTGACGGGAATTCCCGTCCGACTAATGCCCAAGTAGCCAAGCTTAATGTTT
CGTGGTGCGAATGGAACCTAGACCGCAAAAGAAAGGAGAACAATA
Found at i:42006 original size:26 final size:25
Alignment explanation
Indices: 41972--42041 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 25
41962 AGGCGAGTGT
**
41972 GTGGGTGGTGGGTGGTGGTTTGGGTG
1 GTGGGTGGTGGG-GGTGGCGTGGGTG
*
41998 GTGGGTGGTGTGGGTGGCGTGGGTG
1 GTGGGTGGTGGGGGTGGCGTGGGTG
42023 GTTGGGTGGATGCGGGGTG
1 G-TGGGTGG-TG-GGGGTG
42042 ACTGCGGGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 12 0.32
26 18 0.49
27 2 0.05
28 5 0.14
ACGTcount: A:0.01, C:0.03, G:0.66, T:0.30
Consensus pattern (25 bp):
GTGGGTGGTGGGGGTGGCGTGGGTG
Left flanking sequence: Indices 41472 -- 41971
GCACGTTGCGGCAGTGGTTCCGCGACGGCCGAGGGCCCCTGGGCAAGGTGGCGGTGGTGGACGTG
CGCGACTCCGATTTTATGGGGGGGCACATCCGTGGGTGCTTGCACTTCCCCAGTGGCGAGTTGCC
CGACCGGATGCCCGAGTTGCAGAAGCAGATCTTGGACATGGACGCCCGCGACGTGGTGTTCCACT
GTGCCCTCAGCCAGGTGCGGGGCCCGCTGTCCACCCTCAAGTTTTTACGGGCCAATGCGGCGGGG
CTGGACGACCGCCTCAAGGTGTTGCGGGTGTATGTGCTCAAGGGCGGGTTTACGCGGTGGCAGCA
GGACTACGGCGAGGACTCCGAGGTGACCGAGGGGTATAATAAGCAGTTGTGGCAGGCTGAGTTTT
AGGGCGTTACGGTGGCTGAGCTGCCTACGGTATGTGGTTTATAGAAAGGGCTGTGCCCGGATGGA
CATTAATATAGGATCTGGTGATGTTGACAGAGTGTAGGCGAGTGT
Right flanking sequence: Indices 42042 -- 42541
ACTGCGGGTCTCGTATGCGATGCTGGTACAAACAGAATACGAGGGTCATGTGAATGTATCTGGCA
TTGGGATCTATGGTCGCAGGAACTACTGCGGGTGGACGAGAAGGGAAGGATGGTGGGTGGGTGGG
GTGTGGGAATGGTGGGAATGGTGGGAATGTGTAGTATTAGGGTTTTGGGGTTGTTGGCTGTTCTA
TGGTTGTGACGGTTTTGATGTTCCGTGTTTTGTGTAGTTTGAGAAGCGTCTACAGAGCGTCTACA
AGGCGTCCACAGTTGGTGGGGATGGCTCTGGTGGTGCAAAAATCGGGGAGTGATTATGGTCCAAA
AAGTGGTTAGCTGATTACTGTCTTCTCGACGGTTCGCATGCATCGCTCACTTGCTCGATGTTCCC
CCCATTGACGGGAATTCCCGTCCGACTAATGCCCAAGTAGCCAAGCTTAATGTTTCGTGGTGCGA
ATGGAACCTAGACCGCAAAAGAAAGGAGAACAATACAGATCCAGA
Found at i:42186 original size:9 final size:9
Alignment explanation
Indices: 42174--42200 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
42164 TGGGTGGGGT
42174 GTGGGAATG
1 GTGGGAATG
42183 GTGGGAATG
1 GTGGGAATG
42192 GTGGGAATG
1 GTGGGAATG
42201 TGTAGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.56, T:0.22
Consensus pattern (9 bp):
GTGGGAATG
Left flanking sequence: Indices 41674 -- 42173
CAGCCAGGTGCGGGGCCCGCTGTCCACCCTCAAGTTTTTACGGGCCAATGCGGCGGGGCTGGACG
ACCGCCTCAAGGTGTTGCGGGTGTATGTGCTCAAGGGCGGGTTTACGCGGTGGCAGCAGGACTAC
GGCGAGGACTCCGAGGTGACCGAGGGGTATAATAAGCAGTTGTGGCAGGCTGAGTTTTAGGGCGT
TACGGTGGCTGAGCTGCCTACGGTATGTGGTTTATAGAAAGGGCTGTGCCCGGATGGACATTAAT
ATAGGATCTGGTGATGTTGACAGAGTGTAGGCGAGTGTGTGGGTGGTGGGTGGTGGTTTGGGTGG
TGGGTGGTGTGGGTGGCGTGGGTGGTTGGGTGGATGCGGGGTGACTGCGGGTCTCGTATGCGATG
CTGGTACAAACAGAATACGAGGGTCATGTGAATGTATCTGGCATTGGGATCTATGGTCGCAGGAA
CTACTGCGGGTGGACGAGAAGGGAAGGATGGTGGGTGGGTGGGGT
Right flanking sequence: Indices 42201 -- 42700
TGTAGTATTAGGGTTTTGGGGTTGTTGGCTGTTCTATGGTTGTGACGGTTTTGATGTTCCGTGTT
TTGTGTAGTTTGAGAAGCGTCTACAGAGCGTCTACAAGGCGTCCACAGTTGGTGGGGATGGCTCT
GGTGGTGCAAAAATCGGGGAGTGATTATGGTCCAAAAAGTGGTTAGCTGATTACTGTCTTCTCGA
CGGTTCGCATGCATCGCTCACTTGCTCGATGTTCCCCCCATTGACGGGAATTCCCGTCCGACTAA
TGCCCAAGTAGCCAAGCTTAATGTTTCGTGGTGCGAATGGAACCTAGACCGCAAAAGAAAGGAGA
ACAATACAGATCCAGAGTAGTCTACACGCTAACGCTGGGTCTGGTGGTGCCAGCACTACGTCGGC
CCTGTTCCCGCAACTTCTCTCGCCTGCTTGTAGCTCTGCCTCTTCCTTGCTCCCGTGACGCAACC
GTGACTAGCAATTATGTACGGGTGACGGGTCACCTCGAAAATTTC
Found at i:44492 original size:16 final size:16
Alignment explanation
Indices: 44453--44516 Score: 65
Period size: 16 Copynumber: 4.0 Consensus size: 16
44443 CTTTTGAAAA
*
44453 TTTAATAACCAAATTG
1 TTTAATTACCAAATTG
** *
44469 TTGGATTACCAATTTG
1 TTTAATTACCAAATTG
*
44485 TTTAATTATCAAATTG
1 TTTAATTACCAAATTG
* *
44501 TTTTATTATCAAATTG
1 TTTAATTACCAAATTG
44517 CACTGTAACA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (16 bp):
TTTAATTACCAAATTG
Left flanking sequence: Indices 43953 -- 44452
GTACCAGTTTGAGTTCACCTACGACCTCGAGGTCGTGTTCCACCAGGCCAACGCATATGAGTGGA
CGGTGTACCAGGCGCTCGTGGTGCAGGCGATCAAGAAGTGGTACGAAGTGAGGCGCAAGCTCAAC
AAGCACGACCTCATCGACGTGTGCCACAAGGCGGAGCGGTTGGCGGACGAGTGGATCGGGCACTA
AGCACGCGTGGCTACAAATTGCCAAGTTGGGACGAGCGCGATGCAAGCGAACTTTGTGGAGGACC
CTGGAGAGAAAATACCTGCTAGACTAGTCAAAATAGATCAAATTGAACGTGCTTTTAAAAAGGAG
TATGAGGGGAAAGTAACCGCCTTTTTCCCACGGTCGAGGTTGGTATACTACTAGAGACTAGACTC
AGGATTATATAAAATGTTGAACTGACCCTGCCTAATCTGGCCGCATTCGAAACGACCAGACAGTC
TTGAGGTTGTTTGATACTAAGAAAATAGCATTAGGCTTTTGAAAA
Right flanking sequence: Indices 44517 -- 45016
CACTGTAACAGGGCAAATTTTAGGCACTAATGCCAAAAGAATGAGCCGTACATTACCTCTCACCC
CATTACCAACCTGTATCAACTTGATCGGGCACAAATGCCAAAATGAGCCCTACTTTGCCTCTCAC
CAATTACCAACCTGTATCACCTTGAACATTTATTTACCATTAAATAAGACTCGGCCCGTCGTAGT
TCGAGTACACCGGCTGCTGGCGCAACTGCTGCTGCGCCTGTTGCAAGTACTGCTGCTGCTGGGCG
TGCTGCTGGGTTTGGGGAAACACCGGTACCGTGGGCATGTTCTCGAGCCCGCCCGCGGTGGCCTG
GCGCACGATCTGCGCCGGCTGGCCCTGGTTCTGCGCGTCAAACAACTGCGAGGTGGCGTCGCTCA
CCTTGAACGGGTTGGTGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCTGGGAGAAGGAGAGC
GCGGTGGTGCCGGACCCTGTGGCAAACCGCAGCTGGGCAAACGGG
Found at i:45162 original size:15 final size:15
Alignment explanation
Indices: 45144--45178 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
45134 TGTTGGAGCG
*
45144 GCTGGGGCGTCTGCT
1 GCTGGGGCGGCTGCT
45159 GCTGGGGCGGCTGCT
1 GCTGGGGCGGCTGCT
45174 GCTGG
1 GCTGG
45179 AAGTTGAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.51, T:0.23
Consensus pattern (15 bp):
GCTGGGGCGGCTGCT
Left flanking sequence: Indices 44644 -- 45143
CACCAATTACCAACCTGTATCACCTTGAACATTTATTTACCATTAAATAAGACTCGGCCCGTCGT
AGTTCGAGTACACCGGCTGCTGGCGCAACTGCTGCTGCGCCTGTTGCAAGTACTGCTGCTGCTGG
GCGTGCTGCTGGGTTTGGGGAAACACCGGTACCGTGGGCATGTTCTCGAGCCCGCCCGCGGTGGC
CTGGCGCACGATCTGCGCCGGCTGGCCCTGGTTCTGCGCGTCAAACAACTGCGAGGTGGCGTCGC
TCACCTTGAACGGGTTGGTGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCTGGGAGAAGGAG
AGCGCGGTGGTGCCGGACCCTGTGGCAAACCGCAGCTGGGCAAACGGGTTTTGTTCTGCCCCCGT
GGCCTGGGCCGCGAACGGGTTCAGCCCGGTGGCCGTGGCCTGGAGCGGCGCCAGCCCCAGCCGGT
TGAAGGTTCCGTTCATGAACGGGTTGGTCAGCTGGTGTTGGAGCG
Right flanking sequence: Indices 45179 -- 45678
AAGTTGAACAGGCCCGTCAGCTGCACCGGGTTGAACTGGAACTGGTTGGTCTGCTGGGGCTGGAA
CTGGTTCTGCTGGTACTGCGCGGTTTGCTGGGGCTGGAACTGGCTCTGCTGGGCCTGGGCCTGGG
CTGTCTGTTGGGCCTGTAACTGGGCCTGAGCCTGGGCCTGGGCCTGGGCCGTCTGTTGAGCCTGC
AAGGCCTGTTGCTGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAACTGGGCCTGTGCTTGAGCCTG
CGCTTGAGCCTGCGCTTGAGCCTGAGCCTGTGCTTGCGCTTGCGCTGTTTGTTGCGCCTGCAAGG
CCGTCTGCTGCGGGACAAACGCAAAGCCCTGGTTGGGCCCGTCAAACAGGAAGAGCGTGTCGAAC
TGCGACGCGTACGGGTTGGCGCCAAACGCCAGGGTGGCTGTCTGGACCAGGCCCACGCTGGGCTG
GATCGGAGCCTGTTGGCCCTGGTAGAGCCCCATCTGGCCCTGGTT
Found at i:45320 original size:24 final size:24
Alignment explanation
Indices: 45288--45372 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 24
45278 TGGAACTGGC
45288 TCTGCTGGGCCTGGGCCTGGGCTG
1 TCTGCTGGGCCTGGGCCTGGGCTG
* ***
45312 TCTGTTGGGCCTGTAACTGGGCCTG
1 TCTGCTGGGCCTGGGCCTGGG-CTG
* *
45337 --AGCCTGGGCCTGGGCCTGGGCCG
1 TCTG-CTGGGCCTGGGCCTGGGCTG
* *
45360 TCTGTTGAGCCTG
1 TCTGCTGGGCCTG
45373 CAAGGCCTGT
Statistics
Matches: 44, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
23 3 0.07
24 37 0.84
25 4 0.09
ACGTcount: A:0.05, C:0.28, G:0.41, T:0.26
Consensus pattern (24 bp):
TCTGCTGGGCCTGGGCCTGGGCTG
Left flanking sequence: Indices 44788 -- 45287
TTGGGGAAACACCGGTACCGTGGGCATGTTCTCGAGCCCGCCCGCGGTGGCCTGGCGCACGATCT
GCGCCGGCTGGCCCTGGTTCTGCGCGTCAAACAACTGCGAGGTGGCGTCGCTCACCTTGAACGGG
TTGGTGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCTGGGAGAAGGAGAGCGCGGTGGTGCC
GGACCCTGTGGCAAACCGCAGCTGGGCAAACGGGTTTTGTTCTGCCCCCGTGGCCTGGGCCGCGA
ACGGGTTCAGCCCGGTGGCCGTGGCCTGGAGCGGCGCCAGCCCCAGCCGGTTGAAGGTTCCGTTC
ATGAACGGGTTGGTCAGCTGGTGTTGGAGCGGCTGGGGCGTCTGCTGCTGGGGCGGCTGCTGCTG
GAAGTTGAACAGGCCCGTCAGCTGCACCGGGTTGAACTGGAACTGGTTGGTCTGCTGGGGCTGGA
ACTGGTTCTGCTGGTACTGCGCGGTTTGCTGGGGCTGGAACTGGC
Right flanking sequence: Indices 45373 -- 45872
CAAGGCCTGTTGCTGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAACTGGGCCTGTGCTTGAGCCT
GCGCTTGAGCCTGCGCTTGAGCCTGAGCCTGTGCTTGCGCTTGCGCTGTTTGTTGCGCCTGCAAG
GCCGTCTGCTGCGGGACAAACGCAAAGCCCTGGTTGGGCCCGTCAAACAGGAAGAGCGTGTCGAA
CTGCGACGCGTACGGGTTGGCGCCAAACGCCAGGGTGGCTGTCTGGACCAGGCCCACGCTGGGCT
GGATCGGAGCCTGTTGGCCCTGGTAGAGCCCCATCTGGCCCTGGTTCTGGCCCATAGGCTGGCTC
TGGCCCTGGCTCTGGACTTGTCCTTGACTTTGAGGTTGTCCCTGGCTCTGGCTCTGACCCTGTGC
TTGGTTCTGCCCCTGTGACGCCCACGGGTTGTACTGCTGCACCACCAAGCTCGTGCGGTTCTCGT
TCTCCTTCTCCGCCGCCTGCTGGAACTTCTGCGGCACCTCCACCT
Found at i:45347 original size:6 final size:6
Alignment explanation
Indices: 45328--45358 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
45318 GGGCCTGTAA
*
45328 CTGGGC CTGAGC CTGGGC CTGGGC CTGGGC C
1 CTGGGC CTGGGC CTGGGC CTGGGC CTGGGC C
45359 GTCTGTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.03, C:0.35, G:0.45, T:0.16
Consensus pattern (6 bp):
CTGGGC
Left flanking sequence: Indices 44828 -- 45327
CCCGCGGTGGCCTGGCGCACGATCTGCGCCGGCTGGCCCTGGTTCTGCGCGTCAAACAACTGCGA
GGTGGCGTCGCTCACCTTGAACGGGTTGGTGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCT
GGGAGAAGGAGAGCGCGGTGGTGCCGGACCCTGTGGCAAACCGCAGCTGGGCAAACGGGTTTTGT
TCTGCCCCCGTGGCCTGGGCCGCGAACGGGTTCAGCCCGGTGGCCGTGGCCTGGAGCGGCGCCAG
CCCCAGCCGGTTGAAGGTTCCGTTCATGAACGGGTTGGTCAGCTGGTGTTGGAGCGGCTGGGGCG
TCTGCTGCTGGGGCGGCTGCTGCTGGAAGTTGAACAGGCCCGTCAGCTGCACCGGGTTGAACTGG
AACTGGTTGGTCTGCTGGGGCTGGAACTGGTTCTGCTGGTACTGCGCGGTTTGCTGGGGCTGGAA
CTGGCTCTGCTGGGCCTGGGCCTGGGCTGTCTGTTGGGCCTGTAA
Right flanking sequence: Indices 45359 -- 45858
GTCTGTTGAGCCTGCAAGGCCTGTTGCTGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAACTGGGC
CTGTGCTTGAGCCTGCGCTTGAGCCTGCGCTTGAGCCTGAGCCTGTGCTTGCGCTTGCGCTGTTT
GTTGCGCCTGCAAGGCCGTCTGCTGCGGGACAAACGCAAAGCCCTGGTTGGGCCCGTCAAACAGG
AAGAGCGTGTCGAACTGCGACGCGTACGGGTTGGCGCCAAACGCCAGGGTGGCTGTCTGGACCAG
GCCCACGCTGGGCTGGATCGGAGCCTGTTGGCCCTGGTAGAGCCCCATCTGGCCCTGGTTCTGGC
CCATAGGCTGGCTCTGGCCCTGGCTCTGGACTTGTCCTTGACTTTGAGGTTGTCCCTGGCTCTGG
CTCTGACCCTGTGCTTGGTTCTGCCCCTGTGACGCCCACGGGTTGTACTGCTGCACCACCAAGCT
CGTGCGGTTCTCGTTCTCCTTCTCCGCCGCCTGCTGGAACTTCTG
Found at i:45393 original size:12 final size:12
Alignment explanation
Indices: 45376--45411 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
45366 GAGCCTGCAA
45376 GGCCTGTTGCTG
1 GGCCTGTTGCTG
45388 GGCCTGTTGCTG
1 GGCCTGTTGCTG
45400 GGCCTGTTGCTG
1 GGCCTGTTGCTG
45412 AGCCAACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.42, T:0.33
Consensus pattern (12 bp):
GGCCTGTTGCTG
Left flanking sequence: Indices 44876 -- 45375
GCGTCAAACAACTGCGAGGTGGCGTCGCTCACCTTGAACGGGTTGGTGCCCGTGGACACCGGACG
GATCGGTTGCTGGGGCTGGGAGAAGGAGAGCGCGGTGGTGCCGGACCCTGTGGCAAACCGCAGCT
GGGCAAACGGGTTTTGTTCTGCCCCCGTGGCCTGGGCCGCGAACGGGTTCAGCCCGGTGGCCGTG
GCCTGGAGCGGCGCCAGCCCCAGCCGGTTGAAGGTTCCGTTCATGAACGGGTTGGTCAGCTGGTG
TTGGAGCGGCTGGGGCGTCTGCTGCTGGGGCGGCTGCTGCTGGAAGTTGAACAGGCCCGTCAGCT
GCACCGGGTTGAACTGGAACTGGTTGGTCTGCTGGGGCTGGAACTGGTTCTGCTGGTACTGCGCG
GTTTGCTGGGGCTGGAACTGGCTCTGCTGGGCCTGGGCCTGGGCTGTCTGTTGGGCCTGTAACTG
GGCCTGAGCCTGGGCCTGGGCCTGGGCCGTCTGTTGAGCCTGCAA
Right flanking sequence: Indices 45412 -- 45911
AGCCAACTGGGCCTGTGCTTGAGCCTGCGCTTGAGCCTGCGCTTGAGCCTGAGCCTGTGCTTGCG
CTTGCGCTGTTTGTTGCGCCTGCAAGGCCGTCTGCTGCGGGACAAACGCAAAGCCCTGGTTGGGC
CCGTCAAACAGGAAGAGCGTGTCGAACTGCGACGCGTACGGGTTGGCGCCAAACGCCAGGGTGGC
TGTCTGGACCAGGCCCACGCTGGGCTGGATCGGAGCCTGTTGGCCCTGGTAGAGCCCCATCTGGC
CCTGGTTCTGGCCCATAGGCTGGCTCTGGCCCTGGCTCTGGACTTGTCCTTGACTTTGAGGTTGT
CCCTGGCTCTGGCTCTGACCCTGTGCTTGGTTCTGCCCCTGTGACGCCCACGGGTTGTACTGCTG
CACCACCAAGCTCGTGCGGTTCTCGTTCTCCTTCTCCGCCGCCTGCTGGAACTTCTGCGGCACCT
CCACCTTCTTGCCCTTCAGCGCCAAGTACTGCTGGCGGTTGTGCT
Found at i:45423 original size:21 final size:21
Alignment explanation
Indices: 45397--45436 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
45387 GGGCCTGTTG
45397 CTGGGCCTGTTGC-TGAGCCAA
1 CTGGGCCTG-TGCTTGAGCCAA
45418 CTGGGCCTGTGCTTGAGCC
1 CTGGGCCTGTGCTTGAGCC
45437 TGCGCTTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.10, C:0.30, G:0.35, T:0.25
Consensus pattern (21 bp):
CTGGGCCTGTGCTTGAGCCAA
Left flanking sequence: Indices 44897 -- 45396
GCGTCGCTCACCTTGAACGGGTTGGTGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCTGGGA
GAAGGAGAGCGCGGTGGTGCCGGACCCTGTGGCAAACCGCAGCTGGGCAAACGGGTTTTGTTCTG
CCCCCGTGGCCTGGGCCGCGAACGGGTTCAGCCCGGTGGCCGTGGCCTGGAGCGGCGCCAGCCCC
AGCCGGTTGAAGGTTCCGTTCATGAACGGGTTGGTCAGCTGGTGTTGGAGCGGCTGGGGCGTCTG
CTGCTGGGGCGGCTGCTGCTGGAAGTTGAACAGGCCCGTCAGCTGCACCGGGTTGAACTGGAACT
GGTTGGTCTGCTGGGGCTGGAACTGGTTCTGCTGGTACTGCGCGGTTTGCTGGGGCTGGAACTGG
CTCTGCTGGGCCTGGGCCTGGGCTGTCTGTTGGGCCTGTAACTGGGCCTGAGCCTGGGCCTGGGC
CTGGGCCGTCTGTTGAGCCTGCAAGGCCTGTTGCTGGGCCTGTTG
Right flanking sequence: Indices 45437 -- 45936
TGCGCTTGAGCCTGCGCTTGAGCCTGAGCCTGTGCTTGCGCTTGCGCTGTTTGTTGCGCCTGCAA
GGCCGTCTGCTGCGGGACAAACGCAAAGCCCTGGTTGGGCCCGTCAAACAGGAAGAGCGTGTCGA
ACTGCGACGCGTACGGGTTGGCGCCAAACGCCAGGGTGGCTGTCTGGACCAGGCCCACGCTGGGC
TGGATCGGAGCCTGTTGGCCCTGGTAGAGCCCCATCTGGCCCTGGTTCTGGCCCATAGGCTGGCT
CTGGCCCTGGCTCTGGACTTGTCCTTGACTTTGAGGTTGTCCCTGGCTCTGGCTCTGACCCTGTG
CTTGGTTCTGCCCCTGTGACGCCCACGGGTTGTACTGCTGCACCACCAAGCTCGTGCGGTTCTCG
TTCTCCTTCTCCGCCGCCTGCTGGAACTTCTGCGGCACCTCCACCTTCTTGCCCTTCAGCGCCAA
GTACTGCTGGCGGTTGTGCTCGAAGTTGGGGTCGTCCAAGTACTC
Found at i:45443 original size:12 final size:12
Alignment explanation
Indices: 45422--45462 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
45412 AGCCAACTGG
*
45422 GCCTGTGCTTGA
1 GCCTGCGCTTGA
45434 GCCTGCGCTTGA
1 GCCTGCGCTTGA
45446 GCCTGCGCTTGA
1 GCCTGCGCTTGA
45458 GCCTG
1 GCCTG
45463 AGCCTGTGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.07, C:0.32, G:0.34, T:0.27
Consensus pattern (12 bp):
GCCTGCGCTTGA
Left flanking sequence: Indices 44922 -- 45421
TGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCTGGGAGAAGGAGAGCGCGGTGGTGCCGGAC
CCTGTGGCAAACCGCAGCTGGGCAAACGGGTTTTGTTCTGCCCCCGTGGCCTGGGCCGCGAACGG
GTTCAGCCCGGTGGCCGTGGCCTGGAGCGGCGCCAGCCCCAGCCGGTTGAAGGTTCCGTTCATGA
ACGGGTTGGTCAGCTGGTGTTGGAGCGGCTGGGGCGTCTGCTGCTGGGGCGGCTGCTGCTGGAAG
TTGAACAGGCCCGTCAGCTGCACCGGGTTGAACTGGAACTGGTTGGTCTGCTGGGGCTGGAACTG
GTTCTGCTGGTACTGCGCGGTTTGCTGGGGCTGGAACTGGCTCTGCTGGGCCTGGGCCTGGGCTG
TCTGTTGGGCCTGTAACTGGGCCTGAGCCTGGGCCTGGGCCTGGGCCGTCTGTTGAGCCTGCAAG
GCCTGTTGCTGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAACTGG
Right flanking sequence: Indices 45463 -- 45962
AGCCTGTGCTTGCGCTTGCGCTGTTTGTTGCGCCTGCAAGGCCGTCTGCTGCGGGACAAACGCAA
AGCCCTGGTTGGGCCCGTCAAACAGGAAGAGCGTGTCGAACTGCGACGCGTACGGGTTGGCGCCA
AACGCCAGGGTGGCTGTCTGGACCAGGCCCACGCTGGGCTGGATCGGAGCCTGTTGGCCCTGGTA
GAGCCCCATCTGGCCCTGGTTCTGGCCCATAGGCTGGCTCTGGCCCTGGCTCTGGACTTGTCCTT
GACTTTGAGGTTGTCCCTGGCTCTGGCTCTGACCCTGTGCTTGGTTCTGCCCCTGTGACGCCCAC
GGGTTGTACTGCTGCACCACCAAGCTCGTGCGGTTCTCGTTCTCCTTCTCCGCCGCCTGCTGGAA
CTTCTGCGGCACCTCCACCTTCTTGCCCTTCAGCGCCAAGTACTGCTGGCGGTTGTGCTCGAAGT
TGGGGTCGTCCAAGTACTCCTCGAGCGACAGCGTCAACGCGGTGG
Found at i:45447 original size:33 final size:33
Alignment explanation
Indices: 45385--45448 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
45375 AGGCCTGTTG
* *
45385 CTGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAA
1 CTGGGCCTGTTGCTGAGCCTGTCGCTGAGCCAA
45418 CTGGGCCTG-TGCTTGAGCCTG-CGCTTGAGCC
1 CTGGGCCTGTTGC-TGAGCCTGTCGC-TGAGCC
45449 TGCGCTTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 5 0.19
33 22 0.81
ACGTcount: A:0.08, C:0.30, G:0.36, T:0.27
Consensus pattern (33 bp):
CTGGGCCTGTTGCTGAGCCTGTCGCTGAGCCAA
Left flanking sequence: Indices 44885 -- 45384
AACTGCGAGGTGGCGTCGCTCACCTTGAACGGGTTGGTGCCCGTGGACACCGGACGGATCGGTTG
CTGGGGCTGGGAGAAGGAGAGCGCGGTGGTGCCGGACCCTGTGGCAAACCGCAGCTGGGCAAACG
GGTTTTGTTCTGCCCCCGTGGCCTGGGCCGCGAACGGGTTCAGCCCGGTGGCCGTGGCCTGGAGC
GGCGCCAGCCCCAGCCGGTTGAAGGTTCCGTTCATGAACGGGTTGGTCAGCTGGTGTTGGAGCGG
CTGGGGCGTCTGCTGCTGGGGCGGCTGCTGCTGGAAGTTGAACAGGCCCGTCAGCTGCACCGGGT
TGAACTGGAACTGGTTGGTCTGCTGGGGCTGGAACTGGTTCTGCTGGTACTGCGCGGTTTGCTGG
GGCTGGAACTGGCTCTGCTGGGCCTGGGCCTGGGCTGTCTGTTGGGCCTGTAACTGGGCCTGAGC
CTGGGCCTGGGCCTGGGCCGTCTGTTGAGCCTGCAAGGCCTGTTG
Right flanking sequence: Indices 45449 -- 45948
TGCGCTTGAGCCTGAGCCTGTGCTTGCGCTTGCGCTGTTTGTTGCGCCTGCAAGGCCGTCTGCTG
CGGGACAAACGCAAAGCCCTGGTTGGGCCCGTCAAACAGGAAGAGCGTGTCGAACTGCGACGCGT
ACGGGTTGGCGCCAAACGCCAGGGTGGCTGTCTGGACCAGGCCCACGCTGGGCTGGATCGGAGCC
TGTTGGCCCTGGTAGAGCCCCATCTGGCCCTGGTTCTGGCCCATAGGCTGGCTCTGGCCCTGGCT
CTGGACTTGTCCTTGACTTTGAGGTTGTCCCTGGCTCTGGCTCTGACCCTGTGCTTGGTTCTGCC
CCTGTGACGCCCACGGGTTGTACTGCTGCACCACCAAGCTCGTGCGGTTCTCGTTCTCCTTCTCC
GCCGCCTGCTGGAACTTCTGCGGCACCTCCACCTTCTTGCCCTTCAGCGCCAAGTACTGCTGGCG
GTTGTGCTCGAAGTTGGGGTCGTCCAAGTACTCCTCGAGCGACAG
Found at i:45455 original size:24 final size:24
Alignment explanation
Indices: 45422--45480 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
45412 AGCCAACTGG
* * *
45422 GCCTGTGCTTGAGCCTGCGCTTGA
1 GCCTGCGCTTGAGCCTGAGCCTGA
*
45446 GCCTGCGCTTGAGCCTGAGCCTGT
1 GCCTGCGCTTGAGCCTGAGCCTGA
*
45470 GCTTGCGCTTG
1 GCCTGCGCTTG
45481 CGCTGTTTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.31, G:0.34, T:0.29
Consensus pattern (24 bp):
GCCTGCGCTTGAGCCTGAGCCTGA
Left flanking sequence: Indices 44922 -- 45421
TGCCCGTGGACACCGGACGGATCGGTTGCTGGGGCTGGGAGAAGGAGAGCGCGGTGGTGCCGGAC
CCTGTGGCAAACCGCAGCTGGGCAAACGGGTTTTGTTCTGCCCCCGTGGCCTGGGCCGCGAACGG
GTTCAGCCCGGTGGCCGTGGCCTGGAGCGGCGCCAGCCCCAGCCGGTTGAAGGTTCCGTTCATGA
ACGGGTTGGTCAGCTGGTGTTGGAGCGGCTGGGGCGTCTGCTGCTGGGGCGGCTGCTGCTGGAAG
TTGAACAGGCCCGTCAGCTGCACCGGGTTGAACTGGAACTGGTTGGTCTGCTGGGGCTGGAACTG
GTTCTGCTGGTACTGCGCGGTTTGCTGGGGCTGGAACTGGCTCTGCTGGGCCTGGGCCTGGGCTG
TCTGTTGGGCCTGTAACTGGGCCTGAGCCTGGGCCTGGGCCTGGGCCGTCTGTTGAGCCTGCAAG
GCCTGTTGCTGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAACTGG
Right flanking sequence: Indices 45481 -- 45980
CGCTGTTTGTTGCGCCTGCAAGGCCGTCTGCTGCGGGACAAACGCAAAGCCCTGGTTGGGCCCGT
CAAACAGGAAGAGCGTGTCGAACTGCGACGCGTACGGGTTGGCGCCAAACGCCAGGGTGGCTGTC
TGGACCAGGCCCACGCTGGGCTGGATCGGAGCCTGTTGGCCCTGGTAGAGCCCCATCTGGCCCTG
GTTCTGGCCCATAGGCTGGCTCTGGCCCTGGCTCTGGACTTGTCCTTGACTTTGAGGTTGTCCCT
GGCTCTGGCTCTGACCCTGTGCTTGGTTCTGCCCCTGTGACGCCCACGGGTTGTACTGCTGCACC
ACCAAGCTCGTGCGGTTCTCGTTCTCCTTCTCCGCCGCCTGCTGGAACTTCTGCGGCACCTCCAC
CTTCTTGCCCTTCAGCGCCAAGTACTGCTGGCGGTTGTGCTCGAAGTTGGGGTCGTCCAAGTACT
CCTCGAGCGACAGCGTCAACGCGGTGGGCGCGTGCTTGATGGTGG
Found at i:45712 original size:18 final size:18
Alignment explanation
Indices: 45691--45777 Score: 54
Period size: 18 Copynumber: 4.8 Consensus size: 18
45681 GGCCCATAGG
*
45691 CTGGCTCTGGCCCTGGCT
1 CTGGCTCTGTCCCTGGCT
* *
45709 CTGGACT-TGTCCTTGACT
1 CTGG-CTCTGTCCCTGGCT
* *
45727 TTGAGGT-TGTCCCTGGCT
1 CTG-GCTCTGTCCCTGGCT
*
45745 CTGGCTCTGACCCTGTGCT
1 CTGGCTCTGTCCCTG-GCT
* *
45764 -TGGTTCTGCCCCTG
1 CTGGCTCTGTCCCTG
45778 TGACGCCCAC
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
17 2 0.04
18 45 0.85
19 6 0.11
ACGTcount: A:0.05, C:0.32, G:0.29, T:0.34
Consensus pattern (18 bp):
CTGGCTCTGTCCCTGGCT
Left flanking sequence: Indices 45191 -- 45690
CCCGTCAGCTGCACCGGGTTGAACTGGAACTGGTTGGTCTGCTGGGGCTGGAACTGGTTCTGCTG
GTACTGCGCGGTTTGCTGGGGCTGGAACTGGCTCTGCTGGGCCTGGGCCTGGGCTGTCTGTTGGG
CCTGTAACTGGGCCTGAGCCTGGGCCTGGGCCTGGGCCGTCTGTTGAGCCTGCAAGGCCTGTTGC
TGGGCCTGTTGCTGGGCCTGTTGCTGAGCCAACTGGGCCTGTGCTTGAGCCTGCGCTTGAGCCTG
CGCTTGAGCCTGAGCCTGTGCTTGCGCTTGCGCTGTTTGTTGCGCCTGCAAGGCCGTCTGCTGCG
GGACAAACGCAAAGCCCTGGTTGGGCCCGTCAAACAGGAAGAGCGTGTCGAACTGCGACGCGTAC
GGGTTGGCGCCAAACGCCAGGGTGGCTGTCTGGACCAGGCCCACGCTGGGCTGGATCGGAGCCTG
TTGGCCCTGGTAGAGCCCCATCTGGCCCTGGTTCTGGCCCATAGG
Right flanking sequence: Indices 45778 -- 46277
TGACGCCCACGGGTTGTACTGCTGCACCACCAAGCTCGTGCGGTTCTCGTTCTCCTTCTCCGCCG
CCTGCTGGAACTTCTGCGGCACCTCCACCTTCTTGCCCTTCAGCGCCAAGTACTGCTGGCGGTTG
TGCTCGAAGTTGGGGTCGTCCAAGTACTCCTCGAGCGACAGCGTCAACGCGGTGGGCGCGTGCTT
GATGGTGGGCACGTGGAGCTTGGTGGCGTACTCCAAGTGCTTGGCCACCCGGAGATAGTCGATCA
CGTACTTGGTCTGGTCGACAAACTTGGTGTAGATCTTGAGCGCGCGCTCGGCGTCGTACTTCAGC
ATCTCGAAGTAGTGCTCTAGGAGGTTGATCACCCCCTCGTTGAGCTCCTGGAAGAGCGCCAAGAG
ATCGTTGACGAGCAACCGGAACAGCGTCAACACCACGTCGTTCAGAATGTCGCTCTCGCTGAAGC
TGTTCTTCAAGAGCGCATCGATCTGCTTCTGCACCAGCTCCAGCT
Found at i:47502 original size:8 final size:8
Alignment explanation
Indices: 47488--47570 Score: 86
Period size: 8 Copynumber: 11.0 Consensus size: 8
47478 GGTTATGGTG
47488 GTAGGGTA
1 GTAGGGTA
*
47496 ATAGGGTA
1 GTAGGGTA
47504 GTA-GGTA
1 GTAGGGTA
47511 GTA-GG--
1 GTAGGGTA
47516 GTAGGGTA
1 GTAGGGTA
47524 GTAGGGTA
1 GTAGGGTA
*
47532 ATAGGGTA
1 GTAGGGTA
47540 GTAGGGT-
1 GTAGGGTA
* *
47547 GGAGGGTG
1 GTAGGGTA
*
47555 GTAGAGTA
1 GTAGGGTA
47563 GTAGGGTA
1 GTAGGGTA
47571 TGGTGAGTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
5 3 0.05
6 2 0.03
7 15 0.24
8 42 0.68
ACGTcount: A:0.27, C:0.00, G:0.49, T:0.24
Consensus pattern (8 bp):
GTAGGGTA
Left flanking sequence: Indices 46988 -- 47487
CCCGGGTGGTGCGATTCTGGAAACAGGCGAGTGTTTCTTGGGGTGTGGTGGCCACGTATAGCACG
TTCGATTCTCTGACGGCCTGGGTTGGGGCGGCGATTCGACGGATCACTGGTGGACGGTCGAGGCG
AAGCAGCCAGGCAACGGGAGAAGTCGAAAAAAAAAAAGCAGCGGGGGGTCTGGGAACACGTGTGG
AATGTAGCCAGGTCGGTGGATGCGCTTTGTGGGTGGTGTGGGCGCTGTGGTGGGAGACTCGGGTC
GGCCGGTGAAGGTGGCTGGTTTGTTGCGCAAAAAATGCGGGCTGTGAAAAATGAGTGGGACGGCT
ACCGGGCCGGGAATGGGTGGGGAACCGGGTTTTTGGGGTGGTAGCATGGTTGGGGGTGAGTTGGG
GGTGGCTGGGTGTGGGCTGGGTGTGAGCTGGGGCCTGGTGGAGGGCCCAGATGGGGTGAGCCCGT
TGCCGAACGGTGATAGGCCGCGAGGCAAGATTGGTGGTTATGGTG
Right flanking sequence: Indices 47571 -- 48070
TGGTGAGTTGGTTAGGTGGGAGATTAGAGTTCAAGTGGTTATATTTTGTTTGGTGTAGCTTAGAG
TTTTGTTAAGTTGATGTTTGTATTCCCGTGTGAATTGAGGTGGTAGTGTTGTTTGCCACAATGCA
CTAGACAATAGATCCAGAAGCGAGCGGTCGTTTTTCGAGCCAACGCCAGTATTGCGTGGTCGCCT
CGGAGACAGGATTCCGCGGTGAGACAGGACGGCCATGCCCCACAGTCGCCGATCTCGTCTATTTG
CCTTGGCGTTAGCCGAGCCAGGGGCCGGTGAAACGAGAGGAGCCATCCGGGGACGGGGCTTTGTG
GTGGCCATCACGTGTAGCGTCTGCCTCTTTGTGATAGGGGACTAGGCCCTAGGTGGTGGCAGGTG
GTGGCAGAGGCAGGTGGTAACACTAACCGACGCCACCAGATGCGACTCCTATCGTCACGGATTGA
GGCCAATAGGACTTACGGGTTGTCACCTGCCAGTCTACTCCACTC
Found at i:48089 original size:19 final size:19
Alignment explanation
Indices: 48065--48143 Score: 86
Period size: 19 Copynumber: 4.1 Consensus size: 19
48055 CCAGTCTACT
* *
48065 CCACTCCTATGACACCTTA
1 CCACTCCTATTACACCCTA
*
48084 CCACTCCTATTTCACCCTA
1 CCACTCCTATTACACCCTA
**
48103 CGTCTCCTATTACACCCTA
1 CCACTCCTATTACACCCTA
* *
48122 CCTCTCCTATTAAATCCCTA
1 CCACTCCTATTACA-CCCTA
48142 CC
1 CC
48144 TCTACTATTC
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 44 0.86
20 7 0.14
ACGTcount: A:0.23, C:0.44, G:0.03, T:0.30
Consensus pattern (19 bp):
CCACTCCTATTACACCCTA
Left flanking sequence: Indices 47565 -- 48064
AGGGTATGGTGAGTTGGTTAGGTGGGAGATTAGAGTTCAAGTGGTTATATTTTGTTTGGTGTAGC
TTAGAGTTTTGTTAAGTTGATGTTTGTATTCCCGTGTGAATTGAGGTGGTAGTGTTGTTTGCCAC
AATGCACTAGACAATAGATCCAGAAGCGAGCGGTCGTTTTTCGAGCCAACGCCAGTATTGCGTGG
TCGCCTCGGAGACAGGATTCCGCGGTGAGACAGGACGGCCATGCCCCACAGTCGCCGATCTCGTC
TATTTGCCTTGGCGTTAGCCGAGCCAGGGGCCGGTGAAACGAGAGGAGCCATCCGGGGACGGGGC
TTTGTGGTGGCCATCACGTGTAGCGTCTGCCTCTTTGTGATAGGGGACTAGGCCCTAGGTGGTGG
CAGGTGGTGGCAGAGGCAGGTGGTAACACTAACCGACGCCACCAGATGCGACTCCTATCGTCACG
GATTGAGGCCAATAGGACTTACGGGTTGTCACCTGCCAGTCTACT
Right flanking sequence: Indices 48144 -- 48643
TCTACTATTCCATCTCTACTCCGCTCCCAGTCCAACCCTACTATTACTATTTTTATCCTATTCCA
TCCCATTTATTCCTATTACTATCGTCTCCACTCCCACTATTCCTACTCAATACCCACTCCACTCC
TACTCTACTTCCTTCACTCCTACTCTACTATCTTCAATGCTATCCCCTTCCTTCTCTATATCTCT
ATTGTCTATCTACTTCCCTCCGTGCACGGCCCGCGAGAGCTCCCGCAAGTACCCGTCCTCGGCCA
CCTCCACCAACTTGTCCATGTACTCCACATTAGGGCCCAGCGGCCCGTGCGACGTCCGGATCACC
GCCGCAGTGTCCTCGACCAGCTCGGGGCCCACAAACAGCTCGTTGTCCACCGTGCCGATGTAGAT
CCCGGACACGATCTTGTAGTGGTTGCTGCCCACCGTGTCCAACGTTTCGAGCACCGGGTGGGTGC
TGTTGCCCGTGTCGGTGATGACGAACGGCACTTGGTGCGCGGTGT
Found at i:48142 original size:20 final size:19
Alignment explanation
Indices: 48068--48152 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 19
48058 GTCTACTCCA
* * * *
48068 CTCCTATGACACCTTACCA
1 CTCCTATTAAACCCTACCT
** *
48087 CTCCTATTTCACCCTACGT
1 CTCCTATTAAACCCTACCT
*
48106 CTCCTATTACACCCTACCT
1 CTCCTATTAAACCCTACCT
48125 CTCCTATTAAATCCCTACCT
1 CTCCTATTAAA-CCCTACCT
*
48145 CTACTATT
1 CTCCTATT
48153 CCATCTCTAC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
19 41 0.73
20 15 0.27
ACGTcount: A:0.22, C:0.41, G:0.02, T:0.34
Consensus pattern (19 bp):
CTCCTATTAAACCCTACCT
Left flanking sequence: Indices 47568 -- 48067
GTATGGTGAGTTGGTTAGGTGGGAGATTAGAGTTCAAGTGGTTATATTTTGTTTGGTGTAGCTTA
GAGTTTTGTTAAGTTGATGTTTGTATTCCCGTGTGAATTGAGGTGGTAGTGTTGTTTGCCACAAT
GCACTAGACAATAGATCCAGAAGCGAGCGGTCGTTTTTCGAGCCAACGCCAGTATTGCGTGGTCG
CCTCGGAGACAGGATTCCGCGGTGAGACAGGACGGCCATGCCCCACAGTCGCCGATCTCGTCTAT
TTGCCTTGGCGTTAGCCGAGCCAGGGGCCGGTGAAACGAGAGGAGCCATCCGGGGACGGGGCTTT
GTGGTGGCCATCACGTGTAGCGTCTGCCTCTTTGTGATAGGGGACTAGGCCCTAGGTGGTGGCAG
GTGGTGGCAGAGGCAGGTGGTAACACTAACCGACGCCACCAGATGCGACTCCTATCGTCACGGAT
TGAGGCCAATAGGACTTACGGGTTGTCACCTGCCAGTCTACTCCA
Right flanking sequence: Indices 48153 -- 48652
CCATCTCTACTCCGCTCCCAGTCCAACCCTACTATTACTATTTTTATCCTATTCCATCCCATTTA
TTCCTATTACTATCGTCTCCACTCCCACTATTCCTACTCAATACCCACTCCACTCCTACTCTACT
TCCTTCACTCCTACTCTACTATCTTCAATGCTATCCCCTTCCTTCTCTATATCTCTATTGTCTAT
CTACTTCCCTCCGTGCACGGCCCGCGAGAGCTCCCGCAAGTACCCGTCCTCGGCCACCTCCACCA
ACTTGTCCATGTACTCCACATTAGGGCCCAGCGGCCCGTGCGACGTCCGGATCACCGCCGCAGTG
TCCTCGACCAGCTCGGGGCCCACAAACAGCTCGTTGTCCACCGTGCCGATGTAGATCCCGGACAC
GATCTTGTAGTGGTTGCTGCCCACCGTGTCCAACGTTTCGAGCACCGGGTGGGTGCTGTTGCCCG
TGTCGGTGATGACGAACGGCACTTGGTGCGCGGTGTACCCGTCCT
Found at i:49333 original size:12 final size:12
Alignment explanation
Indices: 49316--49359 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
49306 CTCATGACAC
49316 GTTCGTTCAACG
1 GTTCGTTCAACG
49328 GTTCGTGCTCAACG
1 GTTCGT--TCAACG
* *
49342 GTTTGCTCAACG
1 GTTCGTTCAACG
49354 GTTCGT
1 GTTCGT
49360 ATAATTTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 16 0.62
14 10 0.38
ACGTcount: A:0.14, C:0.25, G:0.27, T:0.34
Consensus pattern (12 bp):
GTTCGTTCAACG
Left flanking sequence: Indices 48816 -- 49315
GAGCAGCACCAAGGTGACCACGCGCCCGGGCAGCTCGGGGGTGCCGCGGTGGTCGCTCAGCGACT
GCCAGAAGCGCCGCACGTACCCGGTGAGGTACCCGGTGACCCGCACGGCGTAGTGGGGCGGCGGC
TTGAAGATGAGCAGCCCGTAGCCGATGATCCACGCTCCCTCGTCTGTAGTCATGGTATGACGTAA
TGTGTGAAAAAGTGTGGCTAAATAGGAAGGAGATGAGGGGGAATGGGTAGGAGTCTGTGAGTAAT
GTGCTAGAGCACACCGTGACGTAGAGAACACCGTGAGGGAACACACCGTGAGATGAGCCCACCGT
GATGGACTGTCCACCGTGACGTAAAGCATGTTGGGTAGTGGCCAGAGTTGGCTTGGATCATATGT
CAAAATGTGGGGTAGCCCCAGATACGGTTTACGACACGTTCGACACGCTCGTGCGTTACACCCGT
CACTGCTCTTGACAGGATGCGGGGTAGCTTAAAGGCTCATGACAC
Right flanking sequence: Indices 49360 -- 49859
ATAATTTTTCACATTTTTCACCTAGACCATGGACGTTAAGCGACGTCAACCAACCTACAATCAGT
ATTTCACGAACAGTTTATTCATCAAACAAGTTCTATATGCAACCATTATCATCAATAAGTCATTC
TAAGACCAAAAAGAAGTAAATACAGGGTTCCGACTGGCGGACAGCAGCTCACACGCTTACTGGTT
CTCGGGACGGAGCTTGCGCACCTCCTTGCCGACTCTCCAGATCTCCATGTCACGGATAGTCTGCA
ACTCCTTCTCGAGCTTCTCACGGTAGTCGGGAGAAGAGTTGAAGTCAAGCGAGCGCTGGGTCTCC
TTGCCGGTCTTGACCGAGTCGTAAAGGTCCTCGAACACGGGCTTGAGGGCCTTCTTGAACACGGG
GTACCAGTCCAAGGCACCACGTCTGGCGGTGGTGGAGCACGCGTCGTACATGTAGTCCATACCGT
ACTTGCCGATCAAGGGGTAAAGAGACTGGGTGGCCTCCTCAACGG
Found at i:49341 original size:14 final size:14
Alignment explanation
Indices: 49322--49359 Score: 62
Period size: 12 Copynumber: 2.9 Consensus size: 14
49312 ACACGTTCGT
49322 TCAACGGTTCGTGC
1 TCAACGGTTCGTGC
49336 TCAACGGTT--TGC
1 TCAACGGTTCGTGC
49348 TCAACGGTTCGT
1 TCAACGGTTCGT
49360 ATAATTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 12 0.55
14 10 0.45
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (14 bp):
TCAACGGTTCGTGC
Left flanking sequence: Indices 48822 -- 49321
CACCAAGGTGACCACGCGCCCGGGCAGCTCGGGGGTGCCGCGGTGGTCGCTCAGCGACTGCCAGA
AGCGCCGCACGTACCCGGTGAGGTACCCGGTGACCCGCACGGCGTAGTGGGGCGGCGGCTTGAAG
ATGAGCAGCCCGTAGCCGATGATCCACGCTCCCTCGTCTGTAGTCATGGTATGACGTAATGTGTG
AAAAAGTGTGGCTAAATAGGAAGGAGATGAGGGGGAATGGGTAGGAGTCTGTGAGTAATGTGCTA
GAGCACACCGTGACGTAGAGAACACCGTGAGGGAACACACCGTGAGATGAGCCCACCGTGATGGA
CTGTCCACCGTGACGTAAAGCATGTTGGGTAGTGGCCAGAGTTGGCTTGGATCATATGTCAAAAT
GTGGGGTAGCCCCAGATACGGTTTACGACACGTTCGACACGCTCGTGCGTTACACCCGTCACTGC
TCTTGACAGGATGCGGGGTAGCTTAAAGGCTCATGACACGTTCGT
Right flanking sequence: Indices 49360 -- 49859
ATAATTTTTCACATTTTTCACCTAGACCATGGACGTTAAGCGACGTCAACCAACCTACAATCAGT
ATTTCACGAACAGTTTATTCATCAAACAAGTTCTATATGCAACCATTATCATCAATAAGTCATTC
TAAGACCAAAAAGAAGTAAATACAGGGTTCCGACTGGCGGACAGCAGCTCACACGCTTACTGGTT
CTCGGGACGGAGCTTGCGCACCTCCTTGCCGACTCTCCAGATCTCCATGTCACGGATAGTCTGCA
ACTCCTTCTCGAGCTTCTCACGGTAGTCGGGAGAAGAGTTGAAGTCAAGCGAGCGCTGGGTCTCC
TTGCCGGTCTTGACCGAGTCGTAAAGGTCCTCGAACACGGGCTTGAGGGCCTTCTTGAACACGGG
GTACCAGTCCAAGGCACCACGTCTGGCGGTGGTGGAGCACGCGTCGTACATGTAGTCCATACCGT
ACTTGCCGATCAAGGGGTAAAGAGACTGGGTGGCCTCCTCAACGG
Found at i:51706 original size:13 final size:13
Alignment explanation
Indices: 51684--51728 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
51674 CTGTTTCCGC
51684 CTGC-AATCCTGG
1 CTGCAAATCCTGG
51696 CTGCAAATCCTGG
1 CTGCAAATCCTGG
51709 CTGCAAGA-CCTGG
1 CTGCAA-ATCCTGG
51722 CTGCAAA
1 CTGCAAA
51729 ACCCATCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.16
13 25 0.81
14 1 0.03
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (13 bp):
CTGCAAATCCTGG
Left flanking sequence: Indices 51184 -- 51683
GTAGTGGGGTAGGTATAGTAGTTATAGGGAGTGTTGGATTGTAATAGGTCATCGCAACCGTTGAA
CAATAGGAGGGGATGAGCCGTGGGGCATTTGGGTGGAGTGTTTGGCTTAAAATGTTTATTAGATG
GTTTAGTATTCCGGTTTAGTTTGCCGGCTAGTTTGCTCGTTTCGTTTTCTGACTCCTCCTCGACT
GGGCTGTGGGCTTCCATGCATGGCTTGCTCCGGTTCCGCCGTGCCTGTCGCCTGTTTCGGTGACT
GCCCCGATAATGCACGATGCCGGCGATGGAGATATATCGCCGGATCAGCTCCGGTCGGGCGGATG
AGTGAGGTGGGGAGTGAGTCAGAGTGGTGGGCGAGTGGGTGGGTGATTTTGAACCCTCTGTTGGT
ACACTATACAATCAAGCAATATGACGTTGGTGGAGAGTCGAGACTCGTCATTGGACTCAATCACT
TAGAACGGCTGTTAGGCCCGTTAGCCCGATCTAGTCTGTTTCCGC
Right flanking sequence: Indices 51729 -- 52228
ACCCATCAAATATACAATTCACTCCAAACACCAAACCACCGCAATTTCAACCGAACCCACACTCT
GGGCCGCCGTGCATAATCGTCGTGGCTCCAGATTCCACCAAAAGCAACGAGCCGAATTTCGTATC
GATCGCCGGCCCGTTTCATCTGGATGGTGGTCGAAGAGAGCAAGGACCCCAGAATACGCCACAGC
ACGCCTGACCCCACAAAAACGCCAGCCAAGACTTTGATCGGCCCCACATTGTTCTTGCACACCAC
CATGGCGGCCATTTCAACAGCAACCGGCAACCACCAGGCCACCATCCCTGCCCAGAAACAGTGAA
ATTTGTGAAATTTCAGCCAAGACAAAAGCACCTTTGTTTGTTCACGCTGTGGTGGCTACACCCCG
TTTGCGTCTGAATGTAGCCGTTTGTAGGTCTCGACCATCGCTTTATCAGTCTTGTCAATGCTTTT
GAGTTTCACCCAACTGACAATCTACAATGGTCGTTGATTATTGTT
Found at i:52254 original size:18 final size:19
Alignment explanation
Indices: 52231--52275 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
52221 TTATTGTTCA
52231 ATTAACGTATTACTC-TTC
1 ATTAACGTATTACTCTTTC
* *
52249 ATTAACGTATTAGTCTTTT
1 ATTAACGTATTACTCTTTC
52268 ATTAACGT
1 ATTAACGT
52276 TCTAGCCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTAACGTATTACTCTTTC
Left flanking sequence: Indices 51731 -- 52230
CCATCAAATATACAATTCACTCCAAACACCAAACCACCGCAATTTCAACCGAACCCACACTCTGG
GCCGCCGTGCATAATCGTCGTGGCTCCAGATTCCACCAAAAGCAACGAGCCGAATTTCGTATCGA
TCGCCGGCCCGTTTCATCTGGATGGTGGTCGAAGAGAGCAAGGACCCCAGAATACGCCACAGCAC
GCCTGACCCCACAAAAACGCCAGCCAAGACTTTGATCGGCCCCACATTGTTCTTGCACACCACCA
TGGCGGCCATTTCAACAGCAACCGGCAACCACCAGGCCACCATCCCTGCCCAGAAACAGTGAAAT
TTGTGAAATTTCAGCCAAGACAAAAGCACCTTTGTTTGTTCACGCTGTGGTGGCTACACCCCGTT
TGCGTCTGAATGTAGCCGTTTGTAGGTCTCGACCATCGCTTTATCAGTCTTGTCAATGCTTTTGA
GTTTCACCCAACTGACAATCTACAATGGTCGTTGATTATTGTTCA
Right flanking sequence: Indices 52276 -- 52775
TCTAGCCTATGTAATGGGTTTCACCAGACAGACTGGTCTTCTACTTCTTATCGAGTCTAAACGTA
GCCCAGATTCGGTCCACGTCCAGTTGACCGTCTGTGACCAGTCAGTCTGTGGTCAGTCCAATTGA
TCAGTTTAACCGATCTGACCAGTCTGATTGACCACCAGTCTAACCGACCACCAGTTTAACGATCT
GAAATCAGTCACCTAACGGTTTTAACCAGTTTAGCCTGTTAGCCTGTCTAACCAGTCTAACCAGT
CTCACTGTCTAACCAGCCTAACCAACTCACTGTTTAACCAATCCTCCAACTCACTGAAAATCCAG
CCAGTTGCATCCCCTCTACACTCTTCTAGTCGTTATTCATTATCGTGAGTCGTAATAAATCGTAA
GGTACTATCGTACATGCATAGCTCCCAACTTGTGGAAGAGCTCGTCGATCTGCTGGTGGAACTCA
AGGTCGTCGTCCGCATCCATGTCGCACCACAGCTTCGTCAGCTTC
Found at i:52444 original size:16 final size:16
Alignment explanation
Indices: 52435--52465 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
52425 CAGTCTGATT
52435 GACCACCAGTCTAACC
1 GACCACCAGTCTAACC
*
52451 GACCACCAGTTTAAC
1 GACCACCAGTCTAAC
52466 GATCTGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.39, G:0.13, T:0.16
Consensus pattern (16 bp):
GACCACCAGTCTAACC
Left flanking sequence: Indices 51935 -- 52434
CACAAAAACGCCAGCCAAGACTTTGATCGGCCCCACATTGTTCTTGCACACCACCATGGCGGCCA
TTTCAACAGCAACCGGCAACCACCAGGCCACCATCCCTGCCCAGAAACAGTGAAATTTGTGAAAT
TTCAGCCAAGACAAAAGCACCTTTGTTTGTTCACGCTGTGGTGGCTACACCCCGTTTGCGTCTGA
ATGTAGCCGTTTGTAGGTCTCGACCATCGCTTTATCAGTCTTGTCAATGCTTTTGAGTTTCACCC
AACTGACAATCTACAATGGTCGTTGATTATTGTTCAATTAACGTATTACTCTTCATTAACGTATT
AGTCTTTTATTAACGTTCTAGCCTATGTAATGGGTTTCACCAGACAGACTGGTCTTCTACTTCTT
ATCGAGTCTAAACGTAGCCCAGATTCGGTCCACGTCCAGTTGACCGTCTGTGACCAGTCAGTCTG
TGGTCAGTCCAATTGATCAGTTTAACCGATCTGACCAGTCTGATT
Right flanking sequence: Indices 52466 -- 52965
GATCTGAAATCAGTCACCTAACGGTTTTAACCAGTTTAGCCTGTTAGCCTGTCTAACCAGTCTAA
CCAGTCTCACTGTCTAACCAGCCTAACCAACTCACTGTTTAACCAATCCTCCAACTCACTGAAAA
TCCAGCCAGTTGCATCCCCTCTACACTCTTCTAGTCGTTATTCATTATCGTGAGTCGTAATAAAT
CGTAAGGTACTATCGTACATGCATAGCTCCCAACTTGTGGAAGAGCTCGTCGATCTGCTGGTGGA
ACTCAAGGTCGTCGTCCGCATCCATGTCGCACCACAGCTTCGTCAGCTTCACCAGCAGAATCAAC
GTGGGAAGGGTGTTGTCGAACCCGTCGTCGCGCGGAAGCGCGTCAAACGTCGTGGGCGCGCGCGA
GAACTCGTTGTCGAACACGTCGGTGTCCAGCACGTCGTCGTAGTCGTCAATGGTGAACCCAAACG
CCAGCTTGAGCTCAAACTGCGCCACAAAGTCCGCGAGCAGCCGCT
Found at i:52536 original size:9 final size:9
Alignment explanation
Indices: 52516--52559 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
52506 CTGTTAGCCT
52516 GTCTAACCA
1 GTCTAACCA
52525 GTCTAACCA
1 GTCTAACCA
* *
52534 GTCTCA-CT
1 GTCTAACCA
52542 GTCTAACCA
1 GTCTAACCA
*
52551 GCCTAACCA
1 GTCTAACCA
52560 ACTCACTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
8 6 0.21
9 23 0.79
ACGTcount: A:0.30, C:0.36, G:0.11, T:0.23
Consensus pattern (9 bp):
GTCTAACCA
Left flanking sequence: Indices 52016 -- 52515
CAACCACCAGGCCACCATCCCTGCCCAGAAACAGTGAAATTTGTGAAATTTCAGCCAAGACAAAA
GCACCTTTGTTTGTTCACGCTGTGGTGGCTACACCCCGTTTGCGTCTGAATGTAGCCGTTTGTAG
GTCTCGACCATCGCTTTATCAGTCTTGTCAATGCTTTTGAGTTTCACCCAACTGACAATCTACAA
TGGTCGTTGATTATTGTTCAATTAACGTATTACTCTTCATTAACGTATTAGTCTTTTATTAACGT
TCTAGCCTATGTAATGGGTTTCACCAGACAGACTGGTCTTCTACTTCTTATCGAGTCTAAACGTA
GCCCAGATTCGGTCCACGTCCAGTTGACCGTCTGTGACCAGTCAGTCTGTGGTCAGTCCAATTGA
TCAGTTTAACCGATCTGACCAGTCTGATTGACCACCAGTCTAACCGACCACCAGTTTAACGATCT
GAAATCAGTCACCTAACGGTTTTAACCAGTTTAGCCTGTTAGCCT
Right flanking sequence: Indices 52560 -- 53059
ACTCACTGTTTAACCAATCCTCCAACTCACTGAAAATCCAGCCAGTTGCATCCCCTCTACACTCT
TCTAGTCGTTATTCATTATCGTGAGTCGTAATAAATCGTAAGGTACTATCGTACATGCATAGCTC
CCAACTTGTGGAAGAGCTCGTCGATCTGCTGGTGGAACTCAAGGTCGTCGTCCGCATCCATGTCG
CACCACAGCTTCGTCAGCTTCACCAGCAGAATCAACGTGGGAAGGGTGTTGTCGAACCCGTCGTC
GCGCGGAAGCGCGTCAAACGTCGTGGGCGCGCGCGAGAACTCGTTGTCGAACACGTCGGTGTCCA
GCACGTCGTCGTAGTCGTCAATGGTGAACCCAAACGCCAGCTTGAGCTCAAACTGCGCCACAAAG
TCCGCGAGCAGCCGCTGCGCGGGCTCCGCCACCACCAACGTGGTGGTGAACGTCTCAAACGTCGC
CGCGTTCATGTTGGGGTAGATGTCGTACAACACCAGTGGCAGCAG
Found at i:52543 original size:26 final size:25
Alignment explanation
Indices: 52514--52591 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 25
52504 GCCTGTTAGC
* *
52514 CTGTCTAACCAGTCTAACCAGTCTCA
1 CTGTCTAACCAGCCTAACCA-ACTCA
52540 CTGTCTAACCAGCCTAACCAACTCA
1 CTGTCTAACCAGCCTAACCAACTCA
* *
52565 CTGTTTAACCAATCCT--CCAACTCA
1 CTGTCTAACC-AGCCTAACCAACTCA
52589 CTG
1 CTG
52592 AAAATCCAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
24 11 0.23
25 13 0.28
26 23 0.49
ACGTcount: A:0.28, C:0.37, G:0.09, T:0.26
Consensus pattern (25 bp):
CTGTCTAACCAGCCTAACCAACTCA
Left flanking sequence: Indices 52014 -- 52513
GGCAACCACCAGGCCACCATCCCTGCCCAGAAACAGTGAAATTTGTGAAATTTCAGCCAAGACAA
AAGCACCTTTGTTTGTTCACGCTGTGGTGGCTACACCCCGTTTGCGTCTGAATGTAGCCGTTTGT
AGGTCTCGACCATCGCTTTATCAGTCTTGTCAATGCTTTTGAGTTTCACCCAACTGACAATCTAC
AATGGTCGTTGATTATTGTTCAATTAACGTATTACTCTTCATTAACGTATTAGTCTTTTATTAAC
GTTCTAGCCTATGTAATGGGTTTCACCAGACAGACTGGTCTTCTACTTCTTATCGAGTCTAAACG
TAGCCCAGATTCGGTCCACGTCCAGTTGACCGTCTGTGACCAGTCAGTCTGTGGTCAGTCCAATT
GATCAGTTTAACCGATCTGACCAGTCTGATTGACCACCAGTCTAACCGACCACCAGTTTAACGAT
CTGAAATCAGTCACCTAACGGTTTTAACCAGTTTAGCCTGTTAGC
Right flanking sequence: Indices 52592 -- 53091
AAAATCCAGCCAGTTGCATCCCCTCTACACTCTTCTAGTCGTTATTCATTATCGTGAGTCGTAAT
AAATCGTAAGGTACTATCGTACATGCATAGCTCCCAACTTGTGGAAGAGCTCGTCGATCTGCTGG
TGGAACTCAAGGTCGTCGTCCGCATCCATGTCGCACCACAGCTTCGTCAGCTTCACCAGCAGAAT
CAACGTGGGAAGGGTGTTGTCGAACCCGTCGTCGCGCGGAAGCGCGTCAAACGTCGTGGGCGCGC
GCGAGAACTCGTTGTCGAACACGTCGGTGTCCAGCACGTCGTCGTAGTCGTCAATGGTGAACCCA
AACGCCAGCTTGAGCTCAAACTGCGCCACAAAGTCCGCGAGCAGCCGCTGCGCGGGCTCCGCCAC
CACCAACGTGGTGGTGAACGTCTCAAACGTCGCCGCGTTCATGTTGGGGTAGATGTCGTACAACA
CCAGTGGCAGCAGCACAAACGCGCGGTAGTTGGCGTCCGCCACCG
Found at i:53191 original size:18 final size:18
Alignment explanation
Indices: 53165--53207 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
53155 AGTCCGCGTG
* *
53165 GGCGGCGTTGTACTCGCC
1 GGCGGCGTTGAACCCGCC
*
53183 GGCGTCGTTGAACCCGCC
1 GGCGGCGTTGAACCCGCC
53201 GGCGGCG
1 GGCGGCG
53208 CGGTCAAACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.35, G:0.42, T:0.16
Consensus pattern (18 bp):
GGCGGCGTTGAACCCGCC
Left flanking sequence: Indices 52665 -- 53164
AGGTACTATCGTACATGCATAGCTCCCAACTTGTGGAAGAGCTCGTCGATCTGCTGGTGGAACTC
AAGGTCGTCGTCCGCATCCATGTCGCACCACAGCTTCGTCAGCTTCACCAGCAGAATCAACGTGG
GAAGGGTGTTGTCGAACCCGTCGTCGCGCGGAAGCGCGTCAAACGTCGTGGGCGCGCGCGAGAAC
TCGTTGTCGAACACGTCGGTGTCCAGCACGTCGTCGTAGTCGTCAATGGTGAACCCAAACGCCAG
CTTGAGCTCAAACTGCGCCACAAAGTCCGCGAGCAGCCGCTGCGCGGGCTCCGCCACCACCAACG
TGGTGGTGAACGTCTCAAACGTCGCCGCGTTCATGTTGGGGTAGATGTCGTACAACACCAGTGGC
AGCAGCACAAACGCGCGGTAGTTGGCGTCCGCCACCGTGGTGGGCTTGAACGGCGCCGTCCCGTA
GATGGCGGTGAGCATGGTGATGCCCAAGCCCCAGTAGTCCGCGTG
Right flanking sequence: Indices 53208 -- 53707
CGGTCAAACATCTCGGGCGCCATGTACTTTTCCGTGCCCACGTTCATGTCGTCCGTGACCAAGCT
GGTGGTGGCCAACCCCCAGTCGCACAACTTGAAGCGGCCCCACTGGTCGTACAAGATGTTTTCGG
GCTTGATGTCGCGGTGGTAGACGCCGTGGGCGTGCGCGTGGGCCACCGCGGCGCCAATGTCCTGG
GCCAACCGCACACACTCGTCGTTGGTCAAGTCGCGCTCGTGCACCAAGTCGTACACGTCACCCAC
ACACCGCTCCAACACAAGCACGGTGGCGTCGCCGTCGACAAAGTGGTCCAAGAGCTGGCACACCC
CGGGGTGGGGCCCGATCCGCCGCAACATCTCGATCTCCCGCTCGGCAATCCGCCGTTTGCGCACC
CGCTTGACACACACGTCGGTGTTGGTGGTGCGGTCGGTGGCGAGGGACACCAGTCCGAACAGCCC
GTTTTGGAGCTCGCGAACGACACTGTATCTGTCCATGCAAAATAT
Found at i:54493 original size:12 final size:11
Alignment explanation
Indices: 54468--54498 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
54458 CTGTGTCATG
54468 TGTCACTGGAC
1 TGTCACTGGAC
54479 TGTCACTGCGAC
1 TGTCACTG-GAC
54491 TGTCACTG
1 TGTCACTG
54499 TGGTGGCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (11 bp):
TGTCACTGGAC
Left flanking sequence: Indices 53968 -- 54467
GTGGAAGCGGTGGCGGTGGCCGTGGGCGCGCGTGTGTGGGTGCGGTAGGGGGGTGGTTGGCAGGG
GGCGCCGTGCATTGTCCCGTAGGCGCCCGTGGCGCCCATTCCGCTCGGGCTCAGCGCATTGTGGC
ACCAAAAGAAAGTGTGGGGAATTGTTGGCCCCACACGACCAAAAGAAATGGGAACAGAAATTGGG
CCACAGCAATTGCCAAGGGGACGGTGGGGTGACCGGGGCCCGGGGTGTGGCGGCGACGGTGCGCT
TCGGTGTGTTCTCTAGCGGTGGCTTAGCCCGTGCGCTGGGCGCCCCTGGTTATCGCCCGTACGTG
TCATTTGCGCATGGCGCATCGTGTGATAGATCCCTATTTGGGATTTGCCCGAATCAGGCGGTTAC
GTAAGCTGGGAAAGGGGTATCGGCGTCATTACGCCGAGAGTGGGGCCACTTCGTAGCGTGATGGG
CCAGCAGGATGTGGCGTGTTGGGGAGGGGACGGCTCTGTGTCATG
Right flanking sequence: Indices 54499 -- 54998
TGGTGGCGATAAGGCAGATAAGGCTCTGTGTCACTTGGTGGCAGATAACGCACGGTGACACTGCT
CCTACTGATAATCACGGTTCATTATATTACGGCTATTAGCTGATCTAGACTTAGAACAATGCGGC
AACGAGCCCGGCGCCAATAACGAACAGGCCCATCTCGACGGCGGCGACTCCGGCCTTCAGCGACA
GCTCCTTGGACTTGGTCTCAGCCTTGGACGCCGACTTGGCGTCGGACTTGGCCTCGGACTTGGCG
TCCGACTTGGCGTCAGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGC
CAGGGCCAGCGCCTCCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACT
TGGCCTCAGAGGCGTCAGACTTGGCGTCCGATTTGGCCTCAGAAGCGTCAGACTTGGCCTCGGCC
TTGTCGTCGGACTTGTCTTCGGACTTGTGGTCCGAGTGGTCCATC
Found at i:54731 original size:12 final size:12
Alignment explanation
Indices: 54724--54772 Score: 71
Period size: 12 Copynumber: 4.1 Consensus size: 12
54714 GCCTTGGACG
54724 CCGACTTGGCGT
1 CCGACTTGGCGT
* *
54736 CGGACTTGGCCT
1 CCGACTTGGCGT
*
54748 CGGACTTGGCGT
1 CCGACTTGGCGT
54760 CCGACTTGGCGT
1 CCGACTTGGCGT
54772 C
1 C
54773 AGAGGCCTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.08, C:0.33, G:0.35, T:0.24
Consensus pattern (12 bp):
CCGACTTGGCGT
Left flanking sequence: Indices 54224 -- 54723
CGCTTCGGTGTGTTCTCTAGCGGTGGCTTAGCCCGTGCGCTGGGCGCCCCTGGTTATCGCCCGTA
CGTGTCATTTGCGCATGGCGCATCGTGTGATAGATCCCTATTTGGGATTTGCCCGAATCAGGCGG
TTACGTAAGCTGGGAAAGGGGTATCGGCGTCATTACGCCGAGAGTGGGGCCACTTCGTAGCGTGA
TGGGCCAGCAGGATGTGGCGTGTTGGGGAGGGGACGGCTCTGTGTCATGTGTCACTGGACTGTCA
CTGCGACTGTCACTGTGGTGGCGATAAGGCAGATAAGGCTCTGTGTCACTTGGTGGCAGATAACG
CACGGTGACACTGCTCCTACTGATAATCACGGTTCATTATATTACGGCTATTAGCTGATCTAGAC
TTAGAACAATGCGGCAACGAGCCCGGCGCCAATAACGAACAGGCCCATCTCGACGGCGGCGACTC
CGGCCTTCAGCGACAGCTCCTTGGACTTGGTCTCAGCCTTGGACG
Right flanking sequence: Indices 54773 -- 55272
AGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGCCAGGGCCAGCGCCT
CCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACTTGGCCTCAGAGGCG
TCAGACTTGGCGTCCGATTTGGCCTCAGAAGCGTCAGACTTGGCCTCGGCCTTGTCGTCGGACTT
GTCTTCGGACTTGTGGTCCGAGTGGTCCATCGACATCGCGCCGTGGTCCATGGAGGCGTGGTCCA
TGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGAGTGGTCCATGGTGGCATGGTCCATTGAC
CCGTGGTCCATCATCGAGTGGTCCATGTGGTCCATCGAAGACTCCTCGGCCTTGACCATGGCCAA
GGCAAGCGCACTCAACACAAGCAATTGCATTCTGTAGTGGGTTTACTGACAACCTTGCCGTCGGT
GGCGTATTTATACCCGGAATAAGCCCGTCTCGGGACATCGGGCGT
Found at i:54741 original size:36 final size:36
Alignment explanation
Indices: 54701--54772 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
54691 ACAGCTCCTT
* *
54701 GGACTTGGTCTCAGCCTTGGACG-CCGACTTGGCGTC
1 GGACTTGGCCTCAGACTTGG-CGTCCGACTTGGCGTC
*
54737 GGACTTGGCCTCGGACTTGGCGTCCGACTTGGCGTC
1 GGACTTGGCCTCAGACTTGGCGTCCGACTTGGCGTC
54773 AGAGGCCTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 2 0.06
36 30 0.94
ACGTcount: A:0.10, C:0.31, G:0.35, T:0.25
Consensus pattern (36 bp):
GGACTTGGCCTCAGACTTGGCGTCCGACTTGGCGTC
Left flanking sequence: Indices 54201 -- 54700
CCCGGGGTGTGGCGGCGACGGTGCGCTTCGGTGTGTTCTCTAGCGGTGGCTTAGCCCGTGCGCTG
GGCGCCCCTGGTTATCGCCCGTACGTGTCATTTGCGCATGGCGCATCGTGTGATAGATCCCTATT
TGGGATTTGCCCGAATCAGGCGGTTACGTAAGCTGGGAAAGGGGTATCGGCGTCATTACGCCGAG
AGTGGGGCCACTTCGTAGCGTGATGGGCCAGCAGGATGTGGCGTGTTGGGGAGGGGACGGCTCTG
TGTCATGTGTCACTGGACTGTCACTGCGACTGTCACTGTGGTGGCGATAAGGCAGATAAGGCTCT
GTGTCACTTGGTGGCAGATAACGCACGGTGACACTGCTCCTACTGATAATCACGGTTCATTATAT
TACGGCTATTAGCTGATCTAGACTTAGAACAATGCGGCAACGAGCCCGGCGCCAATAACGAACAG
GCCCATCTCGACGGCGGCGACTCCGGCCTTCAGCGACAGCTCCTT
Right flanking sequence: Indices 54773 -- 55272
AGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGCCAGGGCCAGCGCCT
CCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACTTGGCCTCAGAGGCG
TCAGACTTGGCGTCCGATTTGGCCTCAGAAGCGTCAGACTTGGCCTCGGCCTTGTCGTCGGACTT
GTCTTCGGACTTGTGGTCCGAGTGGTCCATCGACATCGCGCCGTGGTCCATGGAGGCGTGGTCCA
TGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGAGTGGTCCATGGTGGCATGGTCCATTGAC
CCGTGGTCCATCATCGAGTGGTCCATGTGGTCCATCGAAGACTCCTCGGCCTTGACCATGGCCAA
GGCAAGCGCACTCAACACAAGCAATTGCATTCTGTAGTGGGTTTACTGACAACCTTGCCGTCGGT
GGCGTATTTATACCCGGAATAAGCCCGTCTCGGGACATCGGGCGT
Found at i:54743 original size:24 final size:24
Alignment explanation
Indices: 54716--54768 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
54706 TGGTCTCAGC
*
54716 CTTGGACGCCGACTTGGCGTCGGA
1 CTTGGACGCCGACTTGGCGTCCGA
* * *
54740 CTTGGCCTCGGACTTGGCGTCCGA
1 CTTGGACGCCGACTTGGCGTCCGA
54764 CTTGG
1 CTTGG
54769 CGTCAGAGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.09, C:0.30, G:0.36, T:0.25
Consensus pattern (24 bp):
CTTGGACGCCGACTTGGCGTCCGA
Left flanking sequence: Indices 54216 -- 54715
CGACGGTGCGCTTCGGTGTGTTCTCTAGCGGTGGCTTAGCCCGTGCGCTGGGCGCCCCTGGTTAT
CGCCCGTACGTGTCATTTGCGCATGGCGCATCGTGTGATAGATCCCTATTTGGGATTTGCCCGAA
TCAGGCGGTTACGTAAGCTGGGAAAGGGGTATCGGCGTCATTACGCCGAGAGTGGGGCCACTTCG
TAGCGTGATGGGCCAGCAGGATGTGGCGTGTTGGGGAGGGGACGGCTCTGTGTCATGTGTCACTG
GACTGTCACTGCGACTGTCACTGTGGTGGCGATAAGGCAGATAAGGCTCTGTGTCACTTGGTGGC
AGATAACGCACGGTGACACTGCTCCTACTGATAATCACGGTTCATTATATTACGGCTATTAGCTG
ATCTAGACTTAGAACAATGCGGCAACGAGCCCGGCGCCAATAACGAACAGGCCCATCTCGACGGC
GGCGACTCCGGCCTTCAGCGACAGCTCCTTGGACTTGGTCTCAGC
Right flanking sequence: Indices 54769 -- 55268
CGTCAGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGCCAGGGCCAGC
GCCTCCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACTTGGCCTCAGA
GGCGTCAGACTTGGCGTCCGATTTGGCCTCAGAAGCGTCAGACTTGGCCTCGGCCTTGTCGTCGG
ACTTGTCTTCGGACTTGTGGTCCGAGTGGTCCATCGACATCGCGCCGTGGTCCATGGAGGCGTGG
TCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGAGTGGTCCATGGTGGCATGGTCCAT
TGACCCGTGGTCCATCATCGAGTGGTCCATGTGGTCCATCGAAGACTCCTCGGCCTTGACCATGG
CCAAGGCAAGCGCACTCAACACAAGCAATTGCATTCTGTAGTGGGTTTACTGACAACCTTGCCGT
CGGTGGCGTATTTATACCCGGAATAAGCCCGTCTCGGGACATCGG
Found at i:54963 original size:12 final size:12
Alignment explanation
Indices: 54934--54981 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
54924 GCCTCAGAAG
* *
54934 CGTCAGACTTGG
1 CGTCGGACTTGT
* *
54946 CCTCGGCCTTGT
1 CGTCGGACTTGT
54958 CGTCGGACTTGT
1 CGTCGGACTTGT
*
54970 CTTCGGACTTGT
1 CGTCGGACTTGT
54982 GGTCCGAGTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.08, C:0.29, G:0.29, T:0.33
Consensus pattern (12 bp):
CGTCGGACTTGT
Left flanking sequence: Indices 54434 -- 54933
TGGCGTGTTGGGGAGGGGACGGCTCTGTGTCATGTGTCACTGGACTGTCACTGCGACTGTCACTG
TGGTGGCGATAAGGCAGATAAGGCTCTGTGTCACTTGGTGGCAGATAACGCACGGTGACACTGCT
CCTACTGATAATCACGGTTCATTATATTACGGCTATTAGCTGATCTAGACTTAGAACAATGCGGC
AACGAGCCCGGCGCCAATAACGAACAGGCCCATCTCGACGGCGGCGACTCCGGCCTTCAGCGACA
GCTCCTTGGACTTGGTCTCAGCCTTGGACGCCGACTTGGCGTCGGACTTGGCCTCGGACTTGGCG
TCCGACTTGGCGTCAGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGC
CAGGGCCAGCGCCTCCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACT
TGGCCTCAGAGGCGTCAGACTTGGCGTCCGATTTGGCCTCAGAAG
Right flanking sequence: Indices 54982 -- 55481
GGTCCGAGTGGTCCATCGACATCGCGCCGTGGTCCATGGAGGCGTGGTCCATGGTGGCATGGTCC
ATTGACCCGTGGTCCATCATCGAGTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCAT
CGAGTGGTCCATGTGGTCCATCGAAGACTCCTCGGCCTTGACCATGGCCAAGGCAAGCGCACTCA
ACACAAGCAATTGCATTCTGTAGTGGGTTTACTGACAACCTTGCCGTCGGTGGCGTATTTATACC
CGGAATAAGCCCGTCTCGGGACATCGGGCGTGGTCCGGTCACCGTCCGCATGAGACGAGATTGTG
CCCTCGGTAAACTCGCTTGCGGGGCTTGGGAGCGATAGACAGGTCTCGGTGGGCGTTTACTAACG
GTTACTACGCATCGCTGGTTGCCAAAAGCAACCAACACTGCCAACCAGAGGCCCGTGGACTCGAG
GTGTGAGCAATTTACCCACTGGTTTCGGACGCAAATACCACGCGG
Found at i:54975 original size:24 final size:24
Alignment explanation
Indices: 54934--54981 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
54924 GCCTCAGAAG
*
54934 CGTCAGACTTGGCCTCGGCCTTGT
1 CGTCAGACTTGGCCTCGGACTTGT
* * *
54958 CGTCGGACTTGTCTTCGGACTTGT
1 CGTCAGACTTGGCCTCGGACTTGT
54982 GGTCCGAGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.08, C:0.29, G:0.29, T:0.33
Consensus pattern (24 bp):
CGTCAGACTTGGCCTCGGACTTGT
Left flanking sequence: Indices 54434 -- 54933
TGGCGTGTTGGGGAGGGGACGGCTCTGTGTCATGTGTCACTGGACTGTCACTGCGACTGTCACTG
TGGTGGCGATAAGGCAGATAAGGCTCTGTGTCACTTGGTGGCAGATAACGCACGGTGACACTGCT
CCTACTGATAATCACGGTTCATTATATTACGGCTATTAGCTGATCTAGACTTAGAACAATGCGGC
AACGAGCCCGGCGCCAATAACGAACAGGCCCATCTCGACGGCGGCGACTCCGGCCTTCAGCGACA
GCTCCTTGGACTTGGTCTCAGCCTTGGACGCCGACTTGGCGTCGGACTTGGCCTCGGACTTGGCG
TCCGACTTGGCGTCAGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGC
CAGGGCCAGCGCCTCCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACT
TGGCCTCAGAGGCGTCAGACTTGGCGTCCGATTTGGCCTCAGAAG
Right flanking sequence: Indices 54982 -- 55481
GGTCCGAGTGGTCCATCGACATCGCGCCGTGGTCCATGGAGGCGTGGTCCATGGTGGCATGGTCC
ATTGACCCGTGGTCCATCATCGAGTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCAT
CGAGTGGTCCATGTGGTCCATCGAAGACTCCTCGGCCTTGACCATGGCCAAGGCAAGCGCACTCA
ACACAAGCAATTGCATTCTGTAGTGGGTTTACTGACAACCTTGCCGTCGGTGGCGTATTTATACC
CGGAATAAGCCCGTCTCGGGACATCGGGCGTGGTCCGGTCACCGTCCGCATGAGACGAGATTGTG
CCCTCGGTAAACTCGCTTGCGGGGCTTGGGAGCGATAGACAGGTCTCGGTGGGCGTTTACTAACG
GTTACTACGCATCGCTGGTTGCCAAAAGCAACCAACACTGCCAACCAGAGGCCCGTGGACTCGAG
GTGTGAGCAATTTACCCACTGGTTTCGGACGCAAATACCACGCGG
Found at i:55029 original size:15 final size:15
Alignment explanation
Indices: 55009--55108 Score: 67
Period size: 15 Copynumber: 6.7 Consensus size: 15
54999 GACATCGCGC
*
55009 CGTGGTCCATGGAGG
1 CGTGGTCCATGGACG
**
55024 CGTGGTCCATGGTGG
1 CGTGGTCCATGGACG
* * *
55039 CATGGTCCATTGACC
1 CGTGGTCCATGGACG
*
55054 CGTGGTCCAT-CATCG
1 CGTGGTCCATGGA-CG
* **
55069 AGTGGTCCATGGTGG
1 CGTGGTCCATGGACG
* * *
55084 CATGGTCCATTGACC
1 CGTGGTCCATGGACG
55099 CGTGGTCCAT
1 CGTGGTCCAT
55109 CATCGAGTGG
Statistics
Matches: 63, Mismatches: 20, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
14 1 0.02
15 62 0.98
ACGTcount: A:0.14, C:0.26, G:0.34, T:0.26
Consensus pattern (15 bp):
CGTGGTCCATGGACG
Left flanking sequence: Indices 54509 -- 55008
AAGGCAGATAAGGCTCTGTGTCACTTGGTGGCAGATAACGCACGGTGACACTGCTCCTACTGATA
ATCACGGTTCATTATATTACGGCTATTAGCTGATCTAGACTTAGAACAATGCGGCAACGAGCCCG
GCGCCAATAACGAACAGGCCCATCTCGACGGCGGCGACTCCGGCCTTCAGCGACAGCTCCTTGGA
CTTGGTCTCAGCCTTGGACGCCGACTTGGCGTCGGACTTGGCCTCGGACTTGGCGTCCGACTTGG
CGTCAGAGGCCTCGGACTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGCCAGGGCCAGC
GCCTCCGTAGACGCCGCAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACTTGGCCTCAGA
GGCGTCAGACTTGGCGTCCGATTTGGCCTCAGAAGCGTCAGACTTGGCCTCGGCCTTGTCGTCGG
ACTTGTCTTCGGACTTGTGGTCCGAGTGGTCCATCGACATCGCGC
Right flanking sequence: Indices 55109 -- 55608
CATCGAGTGGTCCATGTGGTCCATCGAAGACTCCTCGGCCTTGACCATGGCCAAGGCAAGCGCAC
TCAACACAAGCAATTGCATTCTGTAGTGGGTTTACTGACAACCTTGCCGTCGGTGGCGTATTTAT
ACCCGGAATAAGCCCGTCTCGGGACATCGGGCGTGGTCCGGTCACCGTCCGCATGAGACGAGATT
GTGCCCTCGGTAAACTCGCTTGCGGGGCTTGGGAGCGATAGACAGGTCTCGGTGGGCGTTTACTA
ACGGTTACTACGCATCGCTGGTTGCCAAAAGCAACCAACACTGCCAACCAGAGGCCCGTGGACTC
GAGGTGTGAGCAATTTACCCACTGGTTTCGGACGCAAATACCACGCGGGTGAGGGGGCTTATGGC
GAGATACCCCGCCTGAGTGAACGTGGCTGTCCTAGCCCGTGGACCCGTCCGTGGCAAAAAGGGGT
AGGTACTAACGATGCCCGGTTTCGGCTTAGCGGTTGTGCTGGTTA
Found at i:55057 original size:45 final size:45
Alignment explanation
Indices: 55025--55124 Score: 200
Period size: 45 Copynumber: 2.2 Consensus size: 45
55015 CCATGGAGGC
55025 GTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGA
1 GTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGA
55070 GTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGA
1 GTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGA
55115 GTGGTCCATG
1 GTGGTCCATG
55125 TGGTCCATCG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.27
Consensus pattern (45 bp):
GTGGTCCATGGTGGCATGGTCCATTGACCCGTGGTCCATCATCGA
Left flanking sequence: Indices 54525 -- 55024
TGTGTCACTTGGTGGCAGATAACGCACGGTGACACTGCTCCTACTGATAATCACGGTTCATTATA
TTACGGCTATTAGCTGATCTAGACTTAGAACAATGCGGCAACGAGCCCGGCGCCAATAACGAACA
GGCCCATCTCGACGGCGGCGACTCCGGCCTTCAGCGACAGCTCCTTGGACTTGGTCTCAGCCTTG
GACGCCGACTTGGCGTCGGACTTGGCCTCGGACTTGGCGTCCGACTTGGCGTCAGAGGCCTCGGA
CTTGGGAGCCTCAGTGGTGCCAGAGGGGGCCTCCGTAGCCAGGGCCAGCGCCTCCGTAGACGCCG
CAGACTCGGCAGTGGCCATCGCCGACGACTCGGCGGACTTGGCCTCAGAGGCGTCAGACTTGGCG
TCCGATTTGGCCTCAGAAGCGTCAGACTTGGCCTCGGCCTTGTCGTCGGACTTGTCTTCGGACTT
GTGGTCCGAGTGGTCCATCGACATCGCGCCGTGGTCCATGGAGGC
Right flanking sequence: Indices 55125 -- 55624
TGGTCCATCGAAGACTCCTCGGCCTTGACCATGGCCAAGGCAAGCGCACTCAACACAAGCAATTG
CATTCTGTAGTGGGTTTACTGACAACCTTGCCGTCGGTGGCGTATTTATACCCGGAATAAGCCCG
TCTCGGGACATCGGGCGTGGTCCGGTCACCGTCCGCATGAGACGAGATTGTGCCCTCGGTAAACT
CGCTTGCGGGGCTTGGGAGCGATAGACAGGTCTCGGTGGGCGTTTACTAACGGTTACTACGCATC
GCTGGTTGCCAAAAGCAACCAACACTGCCAACCAGAGGCCCGTGGACTCGAGGTGTGAGCAATTT
ACCCACTGGTTTCGGACGCAAATACCACGCGGGTGAGGGGGCTTATGGCGAGATACCCCGCCTGA
GTGAACGTGGCTGTCCTAGCCCGTGGACCCGTCCGTGGCAAAAAGGGGTAGGTACTAACGATGCC
CGGTTTCGGCTTAGCGGTTGTGCTGGTTACATCGCGACTGCTGGG
Found at i:55843 original size:9 final size:9
Alignment explanation
Indices: 55829--55857 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
55819 AGTGGGAGAA
55829 AGCATTCCG
1 AGCATTCCG
55838 AGCATTCCG
1 AGCATTCCG
55847 AGCATTCCG
1 AGCATTCCG
55856 AG
1 AG
55858 GAGGAGTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (9 bp):
AGCATTCCG
Left flanking sequence: Indices 55329 -- 55828
GGCTTGGGAGCGATAGACAGGTCTCGGTGGGCGTTTACTAACGGTTACTACGCATCGCTGGTTGC
CAAAAGCAACCAACACTGCCAACCAGAGGCCCGTGGACTCGAGGTGTGAGCAATTTACCCACTGG
TTTCGGACGCAAATACCACGCGGGTGAGGGGGCTTATGGCGAGATACCCCGCCTGAGTGAACGTG
GCTGTCCTAGCCCGTGGACCCGTCCGTGGCAAAAAGGGGTAGGTACTAACGATGCCCGGTTTCGG
CTTAGCGGTTGTGCTGGTTACATCGCGACTGCTGGGCTCCAATGGCTACGAGCTGGCCCCCTGGA
AGCGGACGGGTGCTGCGGTTACCCCTCGCCGTTGCGTTATAATTTGCCGTCACGCCGACTCTTGT
CGGCCGTCGTCCACGTCCGACATCCGGATCGAACCACCTTTCTCCGCATTTTGGAAAATCTTCGA
AAATGTGGGTAAAATAGGAAGAGAAGGAGAGATCAAGTGGGAGAA
Right flanking sequence: Indices 55858 -- 56357
GAGGAGTCAGCTTGTAGGACCTTGGGGAAAATGGCGAGGATTTTCTTGTAATTGGTGTAGACGAC
TTGTTTTTCACAGTGTTAAATCCGACTCGTAAACTATTGTTAAACCCGAGCGATCGTCCTAGAAA
TCGCCATTGTTTCGCAACATAGTCGTACCAGTTGATTCCTACGGTTTCACCCCAGAATGGTGGCC
CAATTCTTTGTCAGCCTCTGTGTATTCCATCGTCAGCCTTCGTGTGTTCCCTACCCTTCCAATCC
CTCTACACTTACTCCACTCAAGAAGCAAACTCACTTCAACAACTAATTTCAATTCAACAACTAAA
CTCACTTCAACAACCACTCCAAACCAGTCATAAAATATCTCATTATTTCCTATCCATTACTATAT
AAACCGTTCCTTCTCACAACTTCTGCTTCGGGCTGAGGTGTTGGTACACCGTGGACTCGAACTTG
CGATACGACTCAAGCGTCACCTCGTCCAAAAAGGGTAATATGGAA
Found at i:56173 original size:18 final size:18
Alignment explanation
Indices: 56144--56196 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
56134 CTCAAGAAGC
*
56144 AAACTCACTTCAACAACT
1 AAACTCAATTCAACAACT
**
56162 AATTTCAATTCAACAACT
1 AAACTCAATTCAACAACT
*
56180 AAACTCACTTCAACAAC
1 AAACTCAATTCAACAAC
56197 CACTCCAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (18 bp):
AAACTCAATTCAACAACT
Left flanking sequence: Indices 55644 -- 56143
GCCCCCTGGAAGCGGACGGGTGCTGCGGTTACCCCTCGCCGTTGCGTTATAATTTGCCGTCACGC
CGACTCTTGTCGGCCGTCGTCCACGTCCGACATCCGGATCGAACCACCTTTCTCCGCATTTTGGA
AAATCTTCGAAAATGTGGGTAAAATAGGAAGAGAAGGAGAGATCAAGTGGGAGAAAGCATTCCGA
GCATTCCGAGCATTCCGAGGAGGAGTCAGCTTGTAGGACCTTGGGGAAAATGGCGAGGATTTTCT
TGTAATTGGTGTAGACGACTTGTTTTTCACAGTGTTAAATCCGACTCGTAAACTATTGTTAAACC
CGAGCGATCGTCCTAGAAATCGCCATTGTTTCGCAACATAGTCGTACCAGTTGATTCCTACGGTT
TCACCCCAGAATGGTGGCCCAATTCTTTGTCAGCCTCTGTGTATTCCATCGTCAGCCTTCGTGTG
TTCCCTACCCTTCCAATCCCTCTACACTTACTCCACTCAAGAAGC
Right flanking sequence: Indices 56197 -- 56696
CACTCCAAACCAGTCATAAAATATCTCATTATTTCCTATCCATTACTATATAAACCGTTCCTTCT
CACAACTTCTGCTTCGGGCTGAGGTGTTGGTACACCGTGGACTCGAACTTGCGATACGACTCAAG
CGTCACCTCGTCCAAAAAGGGTAATATGGAACCACCCCAGATGCCGGCGATCTTGTTCTTCAAAT
CGATCCAGTAGTAGATGTTACCAATGCCCAGCCAGTAGATGGACCCCTCGGGCCGGCCCAGGGGC
AACGTCAGCCGGTTGTACGCGTGGCCCGTCAACGTCCACCCGTCCTCGGGGGCGTCGTCGTCCAA
GTCCCACCCCAAGTCGTTCACCATCGGCGCCACCCCGAGCCAGGGAGCCAAGTGGTTATGCATAG
CGTAGTTGATGGTGCGGGCCAGCACCAACTGGTGCCCGTCGTCTGTGCGGCCCTCGTTGAGGTAC
ACGCGGAGGAACGTGAGGTAGTCGCCAATGGTGCCCCAGCACCCC
Done.