sallet_3.scaffold.fasta.s46.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold63
Parameters: 2 7 7 80 10 50 500
Length:  70646

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7415--7443	12	2.4	12	100	0	58	58	0	31	10	1.31
13015--13066	12	4.3	12	95	0	86	38	7	53	0	1.30
13407--13437	15	2.1	15	100	0	62	38	32	22	6	1.80
15014--15103	28	3.3	27	83	11	105	40	3	55	1	1.24
15018--15113	13	7.1	13	76	16	88	40	3	55	1	1.23
22312--22336	9	2.8	9	100	0	50	28	36	24	12	1.91
22910--22952	15	2.9	15	89	0	68	6	44	13	34	1.72
22910--22958	15	3.3	15	83	16	66	8	46	14	30	1.73
23628--23667	19	2.2	19	95	4	73	20	2	47	30	1.63
24058--24082	12	2.1	12	100	0	50	24	52	0	24	1.48
24183--24226	14	3.1	14	81	12	54	38	40	6	13	1.71
25586--25649	21	3.2	20	88	4	94	42	6	35	15	1.72
25643--25681	20	2.0	20	89	0	60	23	7	33	35	1.83
25664--25710	20	2.3	20	81	0	58	21	6	40	31	1.78
28020--28083	22	3.0	22	81	6	69	53	28	17	1	1.53
28032--28078	11	4.4	10	92	7	67	51	29	19	0	1.47
28020--28083	33	2.0	32	87	3	92	53	28	17	1	1.53
30783--30829	13	3.5	13	85	2	58	38	21	14	25	1.92
34672--34724	16	3.4	16	73	2	54	18	18	28	33	1.95
35134--35168	18	1.9	18	100	0	70	8	40	28	22	1.84
35567--35645	21	3.8	21	93	0	131	25	26	34	13	1.94
36129--36185	24	2.4	24	84	0	78	19	24	52	3	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36172--36213	12	3.5	12	83	0	57	14	38	45	2	1.58
36212--36272	24	2.5	24	94	0	104	27	24	36	11	1.90
36256--36318	12	5.2	12	70	14	58	23	19	41	15	1.90
36232--36320	36	2.5	36	84	0	115	23	21	40	14	1.90
36470--36513	21	2.0	22	91	4	72	2	22	50	25	1.61
36542--36598	21	2.7	21	86	0	78	7	26	38	28	1.82
37165--37200	12	3.0	12	91	0	54	0	36	33	30	1.58
40867--40995	40	3.2	40	89	0	204	30	24	15	30	1.95
40811--40995	80	2.3	81	85	1	237	32	23	15	28	1.95
41763--41793	12	2.6	12	94	0	53	12	45	22	19	1.84
41956--42009	24	2.2	24	93	0	90	12	40	37	9	1.76
42556--42606	22	2.3	21	83	9	66	21	45	19	13	1.85
42595--42630	18	2.1	18	89	5	56	22	44	22	11	1.84
42909--42965	15	3.9	15	81	11	73	12	36	7	43	1.69
42918--42962	14	3.1	14	84	9	56	11	35	6	46	1.66
42923--42984	29	2.1	29	87	0	88	12	30	8	48	1.70
43036--43082	17	2.8	17	90	0	67	21	25	21	31	1.98
43057--43165	16	6.7	16	91	3	164	18	34	19	27	1.95
43057--43198	33	4.3	33	86	2	169	18	32	18	30	1.95
43216--43309	33	2.8	33	82	12	122	31	34	8	25	1.86
43367--43403	16	2.4	16	86	8	51	13	29	10	45	1.77
43720--43802	29	2.7	30	77	14	89	21	36	8	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43802--43987	25	7.5	25	92	1	234	36	39	9	14	1.79
43802--43979	12	14.3	12	87	5	221	37	39	10	13	1.78
43892--44044	25	5.6	30	84	5	129	32	39	7	20	1.81
44158--44235	36	2.2	36	97	0	147	6	38	25	29	1.81
44213--44245	12	2.8	12	100	0	66	6	36	33	24	1.80
45402--45434	12	2.8	12	100	0	66	18	27	39	15	1.90
45445--45469	12	2.1	12	100	0	50	20	40	32	8	1.81
45799--45863	11	6.1	11	94	3	98	46	9	35	9	1.68
46007--46108	35	2.9	35	88	0	141	30	7	50	11	1.67
47342--47401	8	7.5	8	88	0	93	10	15	36	38	1.80
48547--48611	14	4.8	13	80	3	58	16	7	55	20	1.65
48559--48611	14	3.8	14	77	7	63	16	7	54	20	1.66
51047--51085	13	3.1	13	92	7	71	51	15	17	15	1.77
51047--51083	12	3.0	12	96	4	65	51	16	16	16	1.77
51041--51160	16	7.9	16	80	13	123	44	15	22	17	1.87
51148--51259	16	6.9	16	85	2	134	28	20	19	31	1.97
51137--51257	32	3.7	32	88	2	152	30	21	19	28	1.97
51150--51257	32	3.3	32	88	1	153	28	21	19	30	1.97
53695--53729	14	2.5	14	95	0	61	28	5	57	8	1.52
54274--54304	11	2.7	12	90	10	55	16	51	6	25	1.68
55060--55106	6	8.3	6	77	13	55	42	2	38	17	1.61
55066--55125	15	4.2	15	79	14	56	40	3	38	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55051--55092	21	2.0	21	95	0	75	40	4	40	14	1.67
55108--55147	12	3.3	12	78	0	53	45	10	27	17	1.80
55263--55319	12	4.8	12	88	0	87	35	28	22	14	1.93
55367--55391	12	2.1	12	100	0	50	8	36	24	32	1.84
57142--57185	21	2.3	18	88	11	61	9	9	27	54	1.62
57142--57185	10	4.5	10	89	10	65	9	9	27	54	1.62
57187--57213	8	3.4	8	100	0	54	14	37	11	37	1.82
58274--58300	10	2.7	10	100	0	54	18	55	7	18	1.65
65995--66049	26	2.1	26	86	6	76	21	56	0	21	1.42
66443--66482	9	4.8	9	76	17	50	22	35	42	0	1.54
66438--66471	15	2.3	15	100	0	68	26	35	38	0	1.57
66431--66488	24	2.5	24	79	17	70	25	37	36	0	1.57
66477--66517	6	6.8	6	83	10	57	31	48	19	0	1.49
66934--66976	9	4.8	9	88	0	50	32	58	4	4	1.39
66921--66976	27	2.1	27	82	0	67	32	55	8	3	1.48
68764--68868	21	5.0	21	84	0	138	10	22	30	36	1.88
68764--68868	42	2.5	42	90	0	156	10	22	30	36	1.88
68975--69017	21	2.0	21	82	8	52	6	41	44	6	1.58
69107--69168	27	2.3	27	97	0	115	17	46	27	8	1.76

Tables:   1

The End!