Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold63
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 70646
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:7432 original size:12 final size:12
Alignment explanation
Indices: 7415--7443 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7405 TTTTGACTCC
7415 ATGAAGGAGAAA
1 ATGAAGGAGAAA
7427 ATGAAGGAGAAA
1 ATGAAGGAGAAA
7439 ATGAA
1 ATGAA
7444 TAGAAAGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.31, T:0.10
Consensus pattern (12 bp):
ATGAAGGAGAAA
Left flanking sequence: Indices 6915 -- 7414
AATCACCACTGATGTAAAGAATAAAAACACGTGAATATTTGGGGACTACATATCCTTTGAATAAT
CACCTTAGGCTGTAAAAGTTGTCACTTTATGAGTGAAAAACACCAAAGTTTTGTCCGCTTTGGGC
CGTATCGTTGAAAAATATTTTTTTCATCAAGCGCAAGTGGTTTAGTGGTAAAATCCAACGTTGCC
ATCGTTGGGCCCCTGGTTCGATTCCGGGCTTGCGCATCCTTTTTATAATTTTTTTGATATGTGAA
TGTAACGTTACATTTTTCTGAGGCTCATCTCTGAAAATTGTTAGATGCCCTAGTTGAGTGATTAA
AAAAAGGTGGGACGGAGTCCCGGGATGCAAAAAGGATGACACCGACGTGATTCGAACACGCGCAT
CTTACGATAACAGAAAACCCGTCCTGATGGAGAGGAAGCTTTCGCTTGAGTCTGCCGCCTTAGAC
CGCTCGGCCACAGTGCCATTTGTTGAGAGCGGAGATTTTGACTCC
Right flanking sequence: Indices 7444 -- 7943
TAGAAAGCGTGGGTTACGTCAGATAATGGGCGGGCTTTGGGAGAGTTTGGAGCTCTTGGAGGATG
TCGCTCATTCGAGTGAATGAATGTTTTATTGACATTTATGTTAGTAAAAGTCTGTGTGATCAGAG
ATGTTGGCTCCCATATACCTGGTTATGCACCTAACCAAATACGGTAGCCATCTAACTACGAGGTA
GTTACAGGAATGTAAACCTTAATCGGTTACATAAGCTACATTCCTGAATATTGTTAAACCTATAT
AGAACAGAGTCTCCCGACTATTGGGATCTTCATCTAATTCCATACCGCATTTCGTACCCTTCGAT
CTGAGTAAGAAATCCACCATGGCTAAGAACGACAAGAAATTCTCCAACGGCTCCTTCGGTGCCTT
GGCTAACGACCCAGAAGTCGGGTCGCAACAAGAGAATTCGTGGGTTTTCATAGCTTGTAAAGTCA
TGCTTCTGTTCACAAGTTTAGCGTCAGTCTAGTTTCTGAATCAGC
Found at i:13035 original size:12 final size:12
Alignment explanation
Indices: 13015--13066 Score: 86
Period size: 12 Copynumber: 4.3 Consensus size: 12
13005 ATTAGACGAA
*
13015 GGAAGGAGGCAG
1 GGAAAGAGGCAG
13027 GGAAAGAGGCAG
1 GGAAAGAGGCAG
13039 GGAAAGAGGCAG
1 GGAAAGAGGCAG
*
13051 GGAAGGAGGCAG
1 GGAAAGAGGCAG
13063 GGAA
1 GGAA
13067 TAGTGGAAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAAGAGGCAG
Left flanking sequence: Indices 12515 -- 13014
GTTTCTGTTTGTTCAAGGTGCCCCAGGTTTCGTAGGCCAAGTCGTACTCCGGGAGATACCCGCCA
TTGTCCAAGTAGATCGGTTTGTCGGAGTGGAACGTGGCAAAACCCGTCACCACCTTCAGGTACAG
CGGCTCGGGACCAGCCTCGAGCGAGTTGGGCGGAGTGAAGCACAGGGAGCCCCGGCTCGAGTTGA
GTTGCTCGGTCTTTTGCTCGAGCTTATCGAGGCACGGGAACAACATCTGGGGGTTCGAGCCGATT
TTGGCCCGTGGTTGCGATGCGGGCTTCCACCGGCGAGCAGAGAGCGATAGCTGGCGCACCCGGTT
CATTGAGAGTGTAATTGGCAATGATTTGGGGGTGTGGGGCTTGACCGCTATTTCCGTTGACCTCA
TCGCACGTGACACAGAGAACGTGATTGTGCATGACAGGGGTTTGATCGCGACGGCAAAGGTTACG
AGCGACGTGCTGGCGTACGCGAATACAGGGGTAAGATTAGACGAA
Right flanking sequence: Indices 13067 -- 13566
TAGTGGAAGCAGGGGTGGAAGAGAAGGGGAAAAAAAGAGCGATCAGTCAACAAACGACTCAGTGG
TTGCAAAAATTGTTTTGTCAACACAACTATTAGCGAGCCTCACTGGGAAATAGTAGGAAATAGTA
GGAGCATACCAGCCCTGGTCACCACAAATACCGCAGACCAGCACGTAGCACGGCATCTGGTCTGC
GCCAGGCAAGCACGGTTGCGTAGCAGCACGCATTTTATACCCGCGAGACCCGGTGGCGAGAGTTT
AACCTAGGATGGATTGACGATCAGCCAGAGTCATCAGCCCGAGCCAAACCAGAGCCATTCAAAAG
CAACCAAACCAGAGCGACAAACCCGATCGAGACAAACCCGATCGAGGGTGACCACGGACTGCTGT
CCTGTCTTATAGTTACGTCGGGGATAAGCACTAGGTCACGCATCCCACCTGCGGTTTGACGAGTA
ACGGGGTTTGACCAGAGAAAATACATGATGGGCGAATCAGATGAG
Found at i:13427 original size:15 final size:15
Alignment explanation
Indices: 13407--13437 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13397 AAACCAGAGC
13407 GACAAACCCGATCGA
1 GACAAACCCGATCGA
13422 GACAAACCCGATCGA
1 GACAAACCCGATCGA
13437 G
1 G
13438 GGTGACCACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.32, G:0.23, T:0.06
Consensus pattern (15 bp):
GACAAACCCGATCGA
Left flanking sequence: Indices 12907 -- 13406
GCACGTGACACAGAGAACGTGATTGTGCATGACAGGGGTTTGATCGCGACGGCAAAGGTTACGAG
CGACGTGCTGGCGTACGCGAATACAGGGGTAAGATTAGACGAAGGAAGGAGGCAGGGAAAGAGGC
AGGGAAAGAGGCAGGGAAGGAGGCAGGGAATAGTGGAAGCAGGGGTGGAAGAGAAGGGGAAAAAA
AGAGCGATCAGTCAACAAACGACTCAGTGGTTGCAAAAATTGTTTTGTCAACACAACTATTAGCG
AGCCTCACTGGGAAATAGTAGGAAATAGTAGGAGCATACCAGCCCTGGTCACCACAAATACCGCA
GACCAGCACGTAGCACGGCATCTGGTCTGCGCCAGGCAAGCACGGTTGCGTAGCAGCACGCATTT
TATACCCGCGAGACCCGGTGGCGAGAGTTTAACCTAGGATGGATTGACGATCAGCCAGAGTCATC
AGCCCGAGCCAAACCAGAGCCATTCAAAAGCAACCAAACCAGAGC
Right flanking sequence: Indices 13438 -- 13937
GGTGACCACGGACTGCTGTCCTGTCTTATAGTTACGTCGGGGATAAGCACTAGGTCACGCATCCC
ACCTGCGGTTTGACGAGTAACGGGGTTTGACCAGAGAAAATACATGATGGGCGAATCAGATGAGA
TCCTGCGAGATCGAGATCCAGCGGGGCACTGCGCGGGGTGAAGACGTGGTAAAAACGTGGTGGGG
GGTGTAAGAGTGGCGTCAGAATTGATCTCGTGGGTTTGAGGAGTAGACTTAAGAGTTAATATGGG
TTGAAGGTTGTAGTGCGTAATTTAACAACGGGAGTACGCTAGCGAGGATCAAAGAGTTTTAGAGT
GCGTAACGGTATAGAGACTCGGTTCGAATGAGCTGATTATGCGTTCGAGCCAGTGATCCCTCGGC
GTAACGGTCGTTGAATGCTACCGGTAGCATCAGTAGGCAATATGGTTACCAATTGAGCGTTGGTG
GTCTGGGGCACTGAGCGTGGCTACCCAGGCTTCAAGTGAGAATAG
Found at i:15063 original size:28 final size:27
Alignment explanation
Indices: 15014--15103 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 27
15004 AACATGAGAT
15014 AGGAGAGGAGAAGGAGGAAGGGGAAGA-
1 AGGAGAGGAGAAGGAGG-AGGGGAAGAG
15041 ATGGAGAGGAGAAGCGAGGAGGGGAAGAG
1 A-GGAGAGGAGAAG-GAGGAGGGGAAGAG
*
15070 AGGAG-GG-GAAGAGACGAGGGGAAGAG
1 AGGAGAGGAGAAG-GAGGAGGGGAAGAG
*
15096 ACGAGAGG
1 AGGAGAGG
15104 GGAAAAGAGG
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
26 21 0.38
27 5 0.09
28 25 0.45
29 5 0.09
ACGTcount: A:0.40, C:0.03, G:0.56, T:0.01
Consensus pattern (27 bp):
AGGAGAGGAGAAGGAGGAGGGGAAGAG
Left flanking sequence: Indices 14514 -- 15013
GGTGGCGGTGCTTGCACCGGTGCGCACCGACCCCCGGTTGTGGGCGGGGTTCGCGGCCAACGGGG
CGGCGGCGTTCCTCCTCCACTGGTGGTGCTTTGGCCCTCCCCTCACCGACCGCATCAACGCGGCC
ACTGGGGGCTACTGCGACGGGGACCTCGCAGTGAAGGGGACATACGAGTGCTACGCGCTAGGCCA
CACGTGGATTGACGGGTTTGACACCTCGAGCCATTGTTACTTGTTGGCGCAGTTCATTGTGTTGA
CGGGGTGTCTGTTGGTGCGCGCGCACCTCCCCCGCGCCGGCGACGAGGAGAGCCAGGCCAACTCC
ACCCAGGTGAAGCCCCGCGGGGTCGATGCGGGGCGGGTGCTTGGGTGGGTGTTGTTGGGGTGTTT
TGGGGTGGAGTTCTTGATCACGGCGTTGTTCTACCACACGTTGGCGGAGCGGGTGGTTGGGTACG
CCCTTGGGGTGGCCATTGTGCAAGTGGTGGTGTTGAACATGAGAT
Right flanking sequence: Indices 15104 -- 15603
GGAAAAGAGGGGAGGGGAGGTGTTTGGGTGTGACAATGACGAAAGCGATGAAAGACACGAACAAG
AGAAGAGACGAAGAAGGGGAGACAATGGTGGAAAGAATACGAAAGAGACAGTATTTTAAATCTCG
CCTACATCCACGACTCCTCACCTGATCCTACGGATTCTCGACCTGGTGCTGACTATTGCGCCCTT
TTCGCCCTCCACTTGCGCCACTTACGCTGCTCACGCTTACTAATCCCCTCCGCCTTGGCCCATTT
GCCACGTCCACCCCCACACAGCACTAATCCCGCTTTCGGGGTTGATTCCGTTCTCGGACGGCCAT
AGTTTCTGCTACCCGGGCTCACAACAGCCATCCTTATTTGTCACACCAGTGCTCGTAACGCCACT
CACACGATCCATAACAATCAACACGAACGCCCCACCAAAACAATCGCCACGCAAACAATTGCTCA
CATACACACTCTACACCGCACAATACACGCTCCCACGTCGCCCCA
Found at i:15067 original size:13 final size:13
Alignment explanation
Indices: 15018--15113 Score: 88
Period size: 13 Copynumber: 7.1 Consensus size: 13
15008 TGAGATAGGA
*
15018 GAGGAGAAG-GAG
1 GAGGGGAAGAGAG
15030 GAAGGGGAAGA-ATG
1 G-AGGGGAAGAGA-G
*
15044 GAGAGGAGAAGCGAG
1 GAG-GG-GAAGAGAG
15059 GAGGGGAAGAGAG
1 GAGGGGAAGAGAG
*
15072 GAGGGGAAGAGAC
1 GAGGGGAAGAGAG
15085 GAGGGGAAGAGACG
1 GAGGGGAAGAGA-G
*
15099 AGAGGGGAAAAGAG
1 -GAGGGGAAGAGAG
15113 G
1 G
15114 GGAGGGGAGG
Statistics
Matches: 70, Mismatches: 6, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
12 1 0.01
13 42 0.60
14 7 0.10
15 19 0.27
16 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.55, T:0.01
Consensus pattern (13 bp):
GAGGGGAAGAGAG
Left flanking sequence: Indices 14518 -- 15017
GCGGTGCTTGCACCGGTGCGCACCGACCCCCGGTTGTGGGCGGGGTTCGCGGCCAACGGGGCGGC
GGCGTTCCTCCTCCACTGGTGGTGCTTTGGCCCTCCCCTCACCGACCGCATCAACGCGGCCACTG
GGGGCTACTGCGACGGGGACCTCGCAGTGAAGGGGACATACGAGTGCTACGCGCTAGGCCACACG
TGGATTGACGGGTTTGACACCTCGAGCCATTGTTACTTGTTGGCGCAGTTCATTGTGTTGACGGG
GTGTCTGTTGGTGCGCGCGCACCTCCCCCGCGCCGGCGACGAGGAGAGCCAGGCCAACTCCACCC
AGGTGAAGCCCCGCGGGGTCGATGCGGGGCGGGTGCTTGGGTGGGTGTTGTTGGGGTGTTTTGGG
GTGGAGTTCTTGATCACGGCGTTGTTCTACCACACGTTGGCGGAGCGGGTGGTTGGGTACGCCCT
TGGGGTGGCCATTGTGCAAGTGGTGGTGTTGAACATGAGATAGGA
Right flanking sequence: Indices 15114 -- 15613
GGAGGGGAGGTGTTTGGGTGTGACAATGACGAAAGCGATGAAAGACACGAACAAGAGAAGAGACG
AAGAAGGGGAGACAATGGTGGAAAGAATACGAAAGAGACAGTATTTTAAATCTCGCCTACATCCA
CGACTCCTCACCTGATCCTACGGATTCTCGACCTGGTGCTGACTATTGCGCCCTTTTCGCCCTCC
ACTTGCGCCACTTACGCTGCTCACGCTTACTAATCCCCTCCGCCTTGGCCCATTTGCCACGTCCA
CCCCCACACAGCACTAATCCCGCTTTCGGGGTTGATTCCGTTCTCGGACGGCCATAGTTTCTGCT
ACCCGGGCTCACAACAGCCATCCTTATTTGTCACACCAGTGCTCGTAACGCCACTCACACGATCC
ATAACAATCAACACGAACGCCCCACCAAAACAATCGCCACGCAAACAATTGCTCACATACACACT
CTACACCGCACAATACACGCTCCCACGTCGCCCCACCCGCTTCCA
Found at i:22326 original size:9 final size:9
Alignment explanation
Indices: 22312--22336 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22302 GAGACAGTCG
22312 CCTAGGCAA
1 CCTAGGCAA
22321 CCTAGGCAA
1 CCTAGGCAA
22330 CCTAGGC
1 CCTAGGC
22337 CACTCACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.36, G:0.24, T:0.12
Consensus pattern (9 bp):
CCTAGGCAA
Left flanking sequence: Indices 21812 -- 22311
TGTGTCGAATACCGTCTTCTTACAAAGCATGTACCTGAGCTGACATTTGACGATCGTACCATGAG
ACGACTCGATATCAGACGAATTGCTTTCGGGTTGCAAGTGAAAATGCCAACCTAAAAATACATCA
CCAGCACGTAATTGAACCACGAGTTCCTTCACCGTTTAGCTCTAACATGTTCCCCCACACATTAT
GGGGGCACTCAAGATACACCGCATACTCCAACCACTTCCCTCAGAACAATACCCCTTCCCACCCT
AATTGCAAAACCAAAACCGTTGGTCCTACTTCTTCCCCCAACATGACAACTCCTGGATCACTATC
TCGTAAGAACTTCATTACTATACCGTTTATACGTACTATGATATGGCAGACCCATGACAACCGGA
AATGGCGAGTGAATCTTGACTGATGGCGAAGAGCCATAGTGTACCATCGTGGAAGACAGTACTGA
GTTTAATGCTATTAAGACAAGGTACGCTGGACCCGGAGACAGTCG
Right flanking sequence: Indices 22337 -- 22836
CACTCACCTAGGCACTACCCTCGGTTCCAAACACCCCGGGCTCAAACTTCACCACCATCACCGTG
ACATTGTCGGTGGTCAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTC
GGCCTCGTGCCGGAACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACA
CCCCGTCACACGCCAAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGA
CGCCCGATCACGAGGTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTT
GACCCGGTTCTTCATGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGG
CCTTGTGGTCGTACGTCAAACGGTAGGGCACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCC
ACGTTCAGCGTGTACATCATGCGACGGTGGCACGGTTGCGGGGTG
Found at i:22928 original size:15 final size:15
Alignment explanation
Indices: 22910--22952 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
22900 GCACCTGAAA
*
22910 CACCCCCTGTTTTTG
1 CACCCCCTGTTTTCG
*
22925 CACCCCCTGTTTGCG
1 CACCCCCTGTTTTCG
22940 CACCCCCTGTTTT
1 CACCCCCTGTTTT
22953 GCCACCGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.07, C:0.44, G:0.14, T:0.35
Consensus pattern (15 bp):
CACCCCCTGTTTTCG
Left flanking sequence: Indices 22410 -- 22909
GGTGGTCAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTCGGCCTCGT
GCCGGAACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACACCCCGTCA
CACGCCAAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGACGCCCGAT
CACGAGGTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTTGACCCGGT
TCTTCATGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGGCCTTGTGG
TCGTACGTCAAACGGTAGGGCACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCCACGTTCAG
CGTGTACATCATGCGACGGTGGCACGGTTGCGGGGTGAACTCGAAACCTGAAACACCCCCTGTTT
TCGCACCGGGTTCGGAGGTGCTGGTGGGGTCACCAGCACCTGAAA
Right flanking sequence: Indices 22953 -- 23452
GCCACCGTCCCCGGGTGGTTTGTCGTCTTTTTTCTCGGTGGCGTCGCCCTTGCTGGGATCGGTCT
CCCACCGTAACACCGCCACAGCAGCAGTGCATCCCAGCGTGCCCACCCCCTGGGTCTCGATCGCC
AGGTCTGCCATGCAAAACACCCGGTTTAGCAGCTCCCGCATGTCGTGCTGGCCCACCTGGGGGGC
CAGATCGGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTGCATGTTGTTGCCACAGTAGC
GGGCACAGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGCCCCAGTCCACTCGCTCGGCA
AAGTTGGCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAGGCGGTGTTTTTGTTCTCGGC
CACCCCGACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGTTGGGGTTCTGGTTCGGAATT
GGTCGCGTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGC
Found at i:22958 original size:15 final size:15
Alignment explanation
Indices: 22910--22958 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
22900 GCACCTGAAA
22910 CACCCCCTGTTTTTG-
1 CACCCCCTG-TTTTGC
22925 CACCCCCTG-TTTGC
1 CACCCCCTGTTTTGC
22939 GCACCCCCTGTTTTGC
1 -CACCCCCTGTTTTGC
22955 CACC
1 CACC
22959 GTCCCCGGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.13
15 22 0.71
16 5 0.16
ACGTcount: A:0.08, C:0.47, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCCCCTGTTTTGC
Left flanking sequence: Indices 22410 -- 22909
GGTGGTCAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTCGGCCTCGT
GCCGGAACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACACCCCGTCA
CACGCCAAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGACGCCCGAT
CACGAGGTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTTGACCCGGT
TCTTCATGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGGCCTTGTGG
TCGTACGTCAAACGGTAGGGCACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCCACGTTCAG
CGTGTACATCATGCGACGGTGGCACGGTTGCGGGGTGAACTCGAAACCTGAAACACCCCCTGTTT
TCGCACCGGGTTCGGAGGTGCTGGTGGGGTCACCAGCACCTGAAA
Right flanking sequence: Indices 22959 -- 23458
GTCCCCGGGTGGTTTGTCGTCTTTTTTCTCGGTGGCGTCGCCCTTGCTGGGATCGGTCTCCCACC
GTAACACCGCCACAGCAGCAGTGCATCCCAGCGTGCCCACCCCCTGGGTCTCGATCGCCAGGTCT
GCCATGCAAAACACCCGGTTTAGCAGCTCCCGCATGTCGTGCTGGCCCACCTGGGGGGCCAGATC
GGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTGCATGTTGTTGCCACAGTAGCGGGCAC
AGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGCCCCAGTCCACTCGCTCGGCAAAGTTG
GCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAGGCGGTGTTTTTGTTCTCGGCCACCCC
GACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGTTGGGGTTCTGGTTCGGAATTGGTCGC
GTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGCCGAGTG
Found at i:23651 original size:18 final size:19
Alignment explanation
Indices: 23628--23667 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
23618 GTGGGAATTG
23628 GGGTTAT-GTGTGAGATGA
1 GGGTTATCGTGTGAGATGA
23646 GGGTTATCGTGTGAGATGA
1 GGGTTATCGTGTGAGATGA
23665 GGG
1 GGG
23668 ATGGAAGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.20, C:0.03, G:0.47, T:0.30
Consensus pattern (19 bp):
GGGTTATCGTGTGAGATGA
Left flanking sequence: Indices 23128 -- 23627
TGCTGGCCCACCTGGGGGGCCAGATCGGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTG
CATGTTGTTGCCACAGTAGCGGGCACAGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGC
CCCAGTCCACTCGCTCGGCAAAGTTGGCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAG
GCGGTGTTTTTGTTCTCGGCCACCCCGACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGT
TGGGGTTCTGGTTCGGAATTGGTCGCGTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGC
CGAGTGGGGAGAAGGGTGGAGAGGTGGAGAAGGGTGGATGTAGACGGGTTTAGGGGGTGTAAAGG
GTGTAAAGGGGGTGTGTTGTGGAGGCAATTGGGTTCGATTGGGGTTTAGCGTGGCTATTGGGTAG
GGGTGTTTAGTATGGGTAAGGTTTGGTAGTGAGCAGTGGGAATTG
Right flanking sequence: Indices 23668 -- 24167
ATGGAAGTGGGCTGTTTACACTATATGAGCTGTGGTTCTATGTCTCTACGGCTGTTTTCGTAGTT
TGAGACGCGTTTCGTTGGAACTGTCGGTGGAAGCAGTGGAAGGTAGTGGGAAAAACAGAATTGCT
CAGAACTTCGATATGGAACTAATCAGACCAACCGACGTACCTAGGAATCGTACAGGTATGTTGTC
TGGAGCCAAGAAATGGCCAAGATCACCAGTTCGTTTCTGGTCCACCAACGCGTTACCGCAGTGGG
AAATAAGGTAGAGCTGTGGGCAGAGAGTACATTGGATGGTTTCGAAAGATTCCAACAGTCTTAAG
TGCTGGGCATTTGTATTTAAATCACCCGTTTCCTCCCTTTTTGTTTTACTACTCCCACCGTGTCG
CTCCCACTATCACTCCCACTATCACGCCCGTATCGCTCCCCACTACCGCCACAAAACCGATAGAT
CGTCTAGGTCTTGGCTAATATGTACGCACCAACCGTCGAGCCTCA
Found at i:24075 original size:12 final size:12
Alignment explanation
Indices: 24058--24082 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24048 CACCGTGTCG
24058 CTCCCACTATCA
1 CTCCCACTATCA
24070 CTCCCACTATCA
1 CTCCCACTATCA
24082 C
1 C
24083 GCCCGTATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (12 bp):
CTCCCACTATCA
Left flanking sequence: Indices 23558 -- 24057
GGGGTTTAGCGTGGCTATTGGGTAGGGGTGTTTAGTATGGGTAAGGTTTGGTAGTGAGCAGTGGG
AATTGGGGTTATGTGTGAGATGAGGGTTATCGTGTGAGATGAGGGATGGAAGTGGGCTGTTTACA
CTATATGAGCTGTGGTTCTATGTCTCTACGGCTGTTTTCGTAGTTTGAGACGCGTTTCGTTGGAA
CTGTCGGTGGAAGCAGTGGAAGGTAGTGGGAAAAACAGAATTGCTCAGAACTTCGATATGGAACT
AATCAGACCAACCGACGTACCTAGGAATCGTACAGGTATGTTGTCTGGAGCCAAGAAATGGCCAA
GATCACCAGTTCGTTTCTGGTCCACCAACGCGTTACCGCAGTGGGAAATAAGGTAGAGCTGTGGG
CAGAGAGTACATTGGATGGTTTCGAAAGATTCCAACAGTCTTAAGTGCTGGGCATTTGTATTTAA
ATCACCCGTTTCCTCCCTTTTTGTTTTACTACTCCCACCGTGTCG
Right flanking sequence: Indices 24083 -- 24582
GCCCGTATCGCTCCCCACTACCGCCACAAAACCGATAGATCGTCTAGGTCTTGGCTAATATGTAC
GCACCAACCGTCGAGCCTCACAACCAAATCAACTACAAAGTCCACCATCCCAAAGTCAACATCCA
CAAAGTACCATCCCCGCCCTCGTCAACCTCGGCTCTCACTGGGTATACTCCGAATAAGGCGCTTA
CATAATCACCCCATGGGGCAATCCCGGACCCATCGAAGCCCGAACACAAAACAGTGGTGGCAAAG
GGGCTCATTTATACACGTCTTATCGCGCTAGAGTCCCCGAGCTCCCAACTTTCCCCTCTTTCTCA
CCAGCTCTCAACTAATGATACTCTCCACGCCAGCCTCAAGACATTTCCACCCACATCCCCACCCT
CGAGACTTCCCACTCCTACACACCACGTCACAACCACCTCCCTACCGTCCCCGCTTCTCGTTCCT
TCATCCACCCCCTCCTCCAACGTCTCGCTAAGCCCTTGCAGTTTT
Found at i:24224 original size:14 final size:14
Alignment explanation
Indices: 24183--24226 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
24173 AAATCAACTA
24183 CAAAGTCCACCATCC
1 CAAAGT-CACCATCC
*
24198 CAAAGTCAACATCC
1 CAAAGTCACCATCC
24212 ACAAAGT-ACCATCC
1 -CAAAGTCACCATCC
24226 C
1 C
24227 CGCCCTCGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 13 0.50
15 12 0.46
ACGTcount: A:0.39, C:0.41, G:0.07, T:0.14
Consensus pattern (14 bp):
CAAAGTCACCATCC
Left flanking sequence: Indices 23683 -- 24182
TTACACTATATGAGCTGTGGTTCTATGTCTCTACGGCTGTTTTCGTAGTTTGAGACGCGTTTCGT
TGGAACTGTCGGTGGAAGCAGTGGAAGGTAGTGGGAAAAACAGAATTGCTCAGAACTTCGATATG
GAACTAATCAGACCAACCGACGTACCTAGGAATCGTACAGGTATGTTGTCTGGAGCCAAGAAATG
GCCAAGATCACCAGTTCGTTTCTGGTCCACCAACGCGTTACCGCAGTGGGAAATAAGGTAGAGCT
GTGGGCAGAGAGTACATTGGATGGTTTCGAAAGATTCCAACAGTCTTAAGTGCTGGGCATTTGTA
TTTAAATCACCCGTTTCCTCCCTTTTTGTTTTACTACTCCCACCGTGTCGCTCCCACTATCACTC
CCACTATCACGCCCGTATCGCTCCCCACTACCGCCACAAAACCGATAGATCGTCTAGGTCTTGGC
TAATATGTACGCACCAACCGTCGAGCCTCACAACCAAATCAACTA
Right flanking sequence: Indices 24227 -- 24726
CGCCCTCGTCAACCTCGGCTCTCACTGGGTATACTCCGAATAAGGCGCTTACATAATCACCCCAT
GGGGCAATCCCGGACCCATCGAAGCCCGAACACAAAACAGTGGTGGCAAAGGGGCTCATTTATAC
ACGTCTTATCGCGCTAGAGTCCCCGAGCTCCCAACTTTCCCCTCTTTCTCACCAGCTCTCAACTA
ATGATACTCTCCACGCCAGCCTCAAGACATTTCCACCCACATCCCCACCCTCGAGACTTCCCACT
CCTACACACCACGTCACAACCACCTCCCTACCGTCCCCGCTTCTCGTTCCTTCATCCACCCCCTC
CTCCAACGTCTCGCTAAGCCCTTGCAGTTTTGACCCCTGAGCTATTTTCTCACATGCCACACTCT
GTGCACCTCCGTGCACCCTCGCGCACATATAACCACCCCACCCCCACCAACAACCACACCATGAC
CGAGTACCCTTACACGGCGAAAAACACGCCCCAGGAGTCCACCGA
Found at i:25610 original size:21 final size:20
Alignment explanation
Indices: 25586--25649 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 20
25576 GAGGTAGATA
25586 ATGAATGTATGAAAGAGACGG
1 ATGAATG-ATGAAAGAGACGG
*
25607 ATGAAGGCATGAAAGAGACGG
1 ATGAATG-ATGAAAGAGACGG
25628 ATGAATG-TGAAAGAGACGG
1 ATGAATGATGAAAGAGACGG
25647 ATG
1 ATG
25650 CGTTGATGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 15 0.38
21 25 0.62
ACGTcount: A:0.42, C:0.06, G:0.36, T:0.16
Consensus pattern (20 bp):
ATGAATGATGAAAGAGACGG
Left flanking sequence: Indices 25086 -- 25585
ACCAATTGCGTGCTGTGTACGCGTGTGGGCCGTTGGTGCAATTGCACCCCAAGTCGCAGCCCAAC
GTAGTGTTGAGAACTCTCCAGGGTGTAGTGAACCAAGTAGCGCCGTCGTTGCAGATCGACCTGGG
TCTCAAGTTTGACTACGTCACCCTGGACGACGAGTACCGCCAGTGGATGATTGACAAGAAGCCCA
AGCTCATTGGCACCGTGAGACAGTACAACGACATGTTTGCCCGCGGGAAGAAGCTCACCGAGCCC
GAGTTTGTTGCCAAGTGGCCCAAGAACCTTCCGTTGGTGATTGTCCACGGCACCGACGACTTTAT
CAACGACATCAAGGGGTCGCGGACGTTTGCGCCGTTGGTGCCCAAGGAGGTCGACTTTGAGTTGT
ACGAGGCCGAGAAGGGACGCCACTCGTTGTTTATCGAGAAGGAGGAGATCTTTAGACCCGTGGCG
GACCGGCTCATTGAGTTGGTGAGAAAGACGAAGTAGAGGTAGATA
Right flanking sequence: Indices 25650 -- 26149
CGTTGATGGATTTACGGATGTGTTAATGGATTGGTGGATGTGTGAATGGAATCGCGGATGTTAAC
CTCGATCCATTTCGACGAAGTAATAGAAGGGGTAGGGCCACCACGCGGATACGACTAACTAACGG
GCGTAAAAATAGCCCACGAGTCACCCTTCAAGGAGCAAAACCCCCGGGCCCACCAATTGGAGTCC
CTTGTCCAACCACAAAACCACCCGACTCGGCTGGAACCACTCCGGGTCCTCCGCATACTCCCACA
GGACCCTGCGTCAAAAATACACCACTACACCACGCCCAGACCCACTCCAACCCACCTCAAATTAC
CTCAAATAAATTACACGTGGCTCCCGGGGTTTTTTGACGCCACTACAACCCACTTTCTCCCACCA
CACCCTCATTCCATCGCATTTTGTCGGTCCCCATTTCCCCGGGCGTTAGCGAAAATTTTATGCAT
TTAAGCGTTTAACGGATTAGCTCACACAATGGGGTTCACCATCAA
Found at i:25668 original size:20 final size:20
Alignment explanation
Indices: 25643--25681 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25633 TGTGAAAGAG
*
25643 ACGGATGCGTTGATGGATTT
1 ACGGATGCGTTAATGGATTT
*
25663 ACGGATGTGTTAATGGATT
1 ACGGATGCGTTAATGGATT
25682 GGTGGATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.33, T:0.36
Consensus pattern (20 bp):
ACGGATGCGTTAATGGATTT
Left flanking sequence: Indices 25143 -- 25642
AGCCCAACGTAGTGTTGAGAACTCTCCAGGGTGTAGTGAACCAAGTAGCGCCGTCGTTGCAGATC
GACCTGGGTCTCAAGTTTGACTACGTCACCCTGGACGACGAGTACCGCCAGTGGATGATTGACAA
GAAGCCCAAGCTCATTGGCACCGTGAGACAGTACAACGACATGTTTGCCCGCGGGAAGAAGCTCA
CCGAGCCCGAGTTTGTTGCCAAGTGGCCCAAGAACCTTCCGTTGGTGATTGTCCACGGCACCGAC
GACTTTATCAACGACATCAAGGGGTCGCGGACGTTTGCGCCGTTGGTGCCCAAGGAGGTCGACTT
TGAGTTGTACGAGGCCGAGAAGGGACGCCACTCGTTGTTTATCGAGAAGGAGGAGATCTTTAGAC
CCGTGGCGGACCGGCTCATTGAGTTGGTGAGAAAGACGAAGTAGAGGTAGATAATGAATGTATGA
AAGAGACGGATGAAGGCATGAAAGAGACGGATGAATGTGAAAGAG
Right flanking sequence: Indices 25682 -- 26181
GGTGGATGTGTGAATGGAATCGCGGATGTTAACCTCGATCCATTTCGACGAAGTAATAGAAGGGG
TAGGGCCACCACGCGGATACGACTAACTAACGGGCGTAAAAATAGCCCACGAGTCACCCTTCAAG
GAGCAAAACCCCCGGGCCCACCAATTGGAGTCCCTTGTCCAACCACAAAACCACCCGACTCGGCT
GGAACCACTCCGGGTCCTCCGCATACTCCCACAGGACCCTGCGTCAAAAATACACCACTACACCA
CGCCCAGACCCACTCCAACCCACCTCAAATTACCTCAAATAAATTACACGTGGCTCCCGGGGTTT
TTTGACGCCACTACAACCCACTTTCTCCCACCACACCCTCATTCCATCGCATTTTGTCGGTCCCC
ATTTCCCCGGGCGTTAGCGAAAATTTTATGCATTTAAGCGTTTAACGGATTAGCTCACACAATGG
GGTTCACCATCAAGCAAAAGATCGATATCTGCTTGTATGCTGAGG
Found at i:25708 original size:20 final size:20
Alignment explanation
Indices: 25664--25710 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
25654 GATGGATTTA
* * *
25664 CGGATGTGTTAATGGATTGG
1 CGGATGTGTGAATGGAATCG
*
25684 TGGATGTGTGAATGGAATCG
1 CGGATGTGTGAATGGAATCG
25704 CGGATGT
1 CGGATGT
25711 TAACCTCGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.06, G:0.40, T:0.32
Consensus pattern (20 bp):
CGGATGTGTGAATGGAATCG
Left flanking sequence: Indices 25164 -- 25663
CTCTCCAGGGTGTAGTGAACCAAGTAGCGCCGTCGTTGCAGATCGACCTGGGTCTCAAGTTTGAC
TACGTCACCCTGGACGACGAGTACCGCCAGTGGATGATTGACAAGAAGCCCAAGCTCATTGGCAC
CGTGAGACAGTACAACGACATGTTTGCCCGCGGGAAGAAGCTCACCGAGCCCGAGTTTGTTGCCA
AGTGGCCCAAGAACCTTCCGTTGGTGATTGTCCACGGCACCGACGACTTTATCAACGACATCAAG
GGGTCGCGGACGTTTGCGCCGTTGGTGCCCAAGGAGGTCGACTTTGAGTTGTACGAGGCCGAGAA
GGGACGCCACTCGTTGTTTATCGAGAAGGAGGAGATCTTTAGACCCGTGGCGGACCGGCTCATTG
AGTTGGTGAGAAAGACGAAGTAGAGGTAGATAATGAATGTATGAAAGAGACGGATGAAGGCATGA
AAGAGACGGATGAATGTGAAAGAGACGGATGCGTTGATGGATTTA
Right flanking sequence: Indices 25711 -- 26210
TAACCTCGATCCATTTCGACGAAGTAATAGAAGGGGTAGGGCCACCACGCGGATACGACTAACTA
ACGGGCGTAAAAATAGCCCACGAGTCACCCTTCAAGGAGCAAAACCCCCGGGCCCACCAATTGGA
GTCCCTTGTCCAACCACAAAACCACCCGACTCGGCTGGAACCACTCCGGGTCCTCCGCATACTCC
CACAGGACCCTGCGTCAAAAATACACCACTACACCACGCCCAGACCCACTCCAACCCACCTCAAA
TTACCTCAAATAAATTACACGTGGCTCCCGGGGTTTTTTGACGCCACTACAACCCACTTTCTCCC
ACCACACCCTCATTCCATCGCATTTTGTCGGTCCCCATTTCCCCGGGCGTTAGCGAAAATTTTAT
GCATTTAAGCGTTTAACGGATTAGCTCACACAATGGGGTTCACCATCAAGCAAAAGATCGATATC
TGCTTGTATGCTGAGGCCCACCCCAAGATGACACAGCAGGAGCTT
Found at i:28045 original size:22 final size:22
Alignment explanation
Indices: 28020--28083 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
28010 AGACACACGT
*
28020 CACAGAAAAACTACAGACG-AAC
1 CACAGAAAAACCACAGA-GAAAC
*
28042 CACAGAGAAACCACAGAGAAAC
1 CACAGAAAAACCACAGAGAAAC
* *
28064 CACAG-AGAACCACAGCGAAA
1 CACAGAAAAACCACAGAGAAA
28084 GCACCCCGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.36
22 23 0.64
ACGTcount: A:0.53, C:0.28, G:0.17, T:0.02
Consensus pattern (22 bp):
CACAGAAAAACCACAGAGAAAC
Left flanking sequence: Indices 27520 -- 28019
TCCCGTGGGAGATCGACGAGCTTATAGCTTTGGTCAACGAGCGAAGCAAGGTGACCCTCATGTAC
ACCTCGCTCGAGGAGATCATTGACAGTTGTCTCTCTGAGACCCTTGACTACGAGGAGTTTCTACA
AATGGAGGACTTGGGGGACGACTGGTTGAAACGAGAGCTCACCGAGGCCGAAACCCCCGTGGCGA
AACGGTTCTCGCCCGCTCCGACGTTTGCCCAATACCCTGTGACCCCGGCCCCCGAGCCTGCGGTG
GCCGCGGCCGTGTCGTCGGTGTTAGAGCTTGTGGACCGGAACGTGCTCATGCTCCAGGATTCGAC
GGTGGCAGACTTGCAAAAGGCGCTTTTCGCGAATGCAATGCCTTAGGGGGAATCATCAGGCTCTT
TTCAGAAGTGCAATGCCACTAGAGGTCTAATTTACGGACACAATTTCTCATAGTATATGTAACAA
TATGACAGGTAACGGCGACGTTGTATGTCAAAGAGAGACACACGT
Right flanking sequence: Indices 28084 -- 28583
GCACCCCGGTCTCACTCACGTCACACTTCACCTCTCCCACTGTTGTATCCCGTTGTGACGTTGTC
TTACCCTATATGCACCACCACGACCAGCTCCGCTACCGCTCACCGGTAAGATCTCGGATGGGCAC
CACCGCCTTTACCGGCCACTCCGACACCCGTTCCGAGAAACTCCCACGCATAAACCCCGTTTCCT
CACATCGCCCTATGACATCATATCTCCGATGAGTCATATCACCCACCAAACCCCAGGTTTCGCAA
GCGAACGCCACAAAAGCACGATTCGCCACGTAACCCGCTACAAATCAGCCCACCGATCCCGTTAG
CCGCGGCCCGTCCCGGAAGCACCCCATGCATGGAATGTGATGGGGCTTTCGACATCGCCCCACAA
TCGGCCCGGGCGCGCAACCAAGCAAGGCGCGAGCCCTGGCTGGTACCAGGGGCTGAGACACGACA
TTGATCCCCGCAAAAGCAAAAACTGTCGTAGAATTGGGTGTTGTA
Found at i:28046 original size:11 final size:10
Alignment explanation
Indices: 28032--28078 Score: 67
Period size: 11 Copynumber: 4.4 Consensus size: 10
28022 CAGAAAAACT
28032 ACAGACGAACC
1 ACAGA-GAACC
28043 ACAGAGAAACC
1 ACAGAG-AACC
28054 ACAGAGAAACC
1 ACAGAG-AACC
28065 ACAGAGAACC
1 ACAGAGAACC
28075 ACAG
1 ACAG
28079 CGAAAGCACC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.26
11 26 0.74
ACGTcount: A:0.51, C:0.30, G:0.19, T:0.00
Consensus pattern (10 bp):
ACAGAGAACC
Left flanking sequence: Indices 27532 -- 28031
TCGACGAGCTTATAGCTTTGGTCAACGAGCGAAGCAAGGTGACCCTCATGTACACCTCGCTCGAG
GAGATCATTGACAGTTGTCTCTCTGAGACCCTTGACTACGAGGAGTTTCTACAAATGGAGGACTT
GGGGGACGACTGGTTGAAACGAGAGCTCACCGAGGCCGAAACCCCCGTGGCGAAACGGTTCTCGC
CCGCTCCGACGTTTGCCCAATACCCTGTGACCCCGGCCCCCGAGCCTGCGGTGGCCGCGGCCGTG
TCGTCGGTGTTAGAGCTTGTGGACCGGAACGTGCTCATGCTCCAGGATTCGACGGTGGCAGACTT
GCAAAAGGCGCTTTTCGCGAATGCAATGCCTTAGGGGGAATCATCAGGCTCTTTTCAGAAGTGCA
ATGCCACTAGAGGTCTAATTTACGGACACAATTTCTCATAGTATATGTAACAATATGACAGGTAA
CGGCGACGTTGTATGTCAAAGAGAGACACACGTCACAGAAAAACT
Right flanking sequence: Indices 28079 -- 28578
CGAAAGCACCCCGGTCTCACTCACGTCACACTTCACCTCTCCCACTGTTGTATCCCGTTGTGACG
TTGTCTTACCCTATATGCACCACCACGACCAGCTCCGCTACCGCTCACCGGTAAGATCTCGGATG
GGCACCACCGCCTTTACCGGCCACTCCGACACCCGTTCCGAGAAACTCCCACGCATAAACCCCGT
TTCCTCACATCGCCCTATGACATCATATCTCCGATGAGTCATATCACCCACCAAACCCCAGGTTT
CGCAAGCGAACGCCACAAAAGCACGATTCGCCACGTAACCCGCTACAAATCAGCCCACCGATCCC
GTTAGCCGCGGCCCGTCCCGGAAGCACCCCATGCATGGAATGTGATGGGGCTTTCGACATCGCCC
CACAATCGGCCCGGGCGCGCAACCAAGCAAGGCGCGAGCCCTGGCTGGTACCAGGGGCTGAGACA
CGACATTGATCCCCGCAAAAGCAAAAACTGTCGTAGAATTGGGTG
Found at i:28057 original size:33 final size:32
Alignment explanation
Indices: 28020--28083 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
28010 AGACACACGT
*
28020 CACAGAAAAACTACAGACGAACCACAGAGAAAC
1 CACAGAAAAACCACAGA-GAACCACAGAGAAAC
* *
28053 CACAGAGAAACCACAGAGAACCACAGCGAAA
1 CACAGAAAAACCACAGAGAACCACAGAGAAA
28084 GCACCCCGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.53, C:0.28, G:0.17, T:0.02
Consensus pattern (32 bp):
CACAGAAAAACCACAGAGAACCACAGAGAAAC
Left flanking sequence: Indices 27520 -- 28019
TCCCGTGGGAGATCGACGAGCTTATAGCTTTGGTCAACGAGCGAAGCAAGGTGACCCTCATGTAC
ACCTCGCTCGAGGAGATCATTGACAGTTGTCTCTCTGAGACCCTTGACTACGAGGAGTTTCTACA
AATGGAGGACTTGGGGGACGACTGGTTGAAACGAGAGCTCACCGAGGCCGAAACCCCCGTGGCGA
AACGGTTCTCGCCCGCTCCGACGTTTGCCCAATACCCTGTGACCCCGGCCCCCGAGCCTGCGGTG
GCCGCGGCCGTGTCGTCGGTGTTAGAGCTTGTGGACCGGAACGTGCTCATGCTCCAGGATTCGAC
GGTGGCAGACTTGCAAAAGGCGCTTTTCGCGAATGCAATGCCTTAGGGGGAATCATCAGGCTCTT
TTCAGAAGTGCAATGCCACTAGAGGTCTAATTTACGGACACAATTTCTCATAGTATATGTAACAA
TATGACAGGTAACGGCGACGTTGTATGTCAAAGAGAGACACACGT
Right flanking sequence: Indices 28084 -- 28583
GCACCCCGGTCTCACTCACGTCACACTTCACCTCTCCCACTGTTGTATCCCGTTGTGACGTTGTC
TTACCCTATATGCACCACCACGACCAGCTCCGCTACCGCTCACCGGTAAGATCTCGGATGGGCAC
CACCGCCTTTACCGGCCACTCCGACACCCGTTCCGAGAAACTCCCACGCATAAACCCCGTTTCCT
CACATCGCCCTATGACATCATATCTCCGATGAGTCATATCACCCACCAAACCCCAGGTTTCGCAA
GCGAACGCCACAAAAGCACGATTCGCCACGTAACCCGCTACAAATCAGCCCACCGATCCCGTTAG
CCGCGGCCCGTCCCGGAAGCACCCCATGCATGGAATGTGATGGGGCTTTCGACATCGCCCCACAA
TCGGCCCGGGCGCGCAACCAAGCAAGGCGCGAGCCCTGGCTGGTACCAGGGGCTGAGACACGACA
TTGATCCCCGCAAAAGCAAAAACTGTCGTAGAATTGGGTGTTGTA
Found at i:30812 original size:13 final size:13
Alignment explanation
Indices: 30783--30829 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
30773 TCCCTTCAGG
*
30783 ATTGCAAAACTTGA
1 ATTGC-AAACCTGA
*
30797 ATTGCATACCTGA
1 ATTGCAAACCTGA
*
30810 ATTGCAAACCCGA
1 ATTGCAAACCTGA
30823 ATTGCAA
1 ATTGCAA
30830 TTTATTTGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 24 0.83
14 5 0.17
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (13 bp):
ATTGCAAACCTGA
Left flanking sequence: Indices 30283 -- 30782
ACTTTGCCATCAACATCGATGTCAAGCACTACCACGAGCACTCGTTGGGCAAGGACGCCAATGCG
CGGGCTGCCACCTACATCGAGGCGTCGCTCGACGACAAGGTGCTGCGGTGGGGTGTGGGTATCCA
CACCGATGTATCGCAGGCGCTGTTCTTGTCGCTCATCTCGATTTTGAACGGGTTGGAGCGCGCTG
GCGAGATCAAGAAGTAGCATGTATTTATAGTGATGAACAACAAGAAAGGATAGAGGGTGATGGTG
GGAAACACACTTTGGGGTTGTACGTTAATCTCATGAATACTTCAGCCCAATTCAGGTTATATTCA
TGGTAGATCCGTTAGCAACGATTATAGTAGAGAAGTAGGTGATTGAAAGAGCAGCTTGATGACGC
TCAGTGACTGAGAGAGCAGCTTGCAGACTCACTAAATGCGTTATTAACAGTAAGAGCTAAAGGAG
TCTCGAAATTCGTTCTTACAAGTACTCAATTCTCGTCCCTTCAGG
Right flanking sequence: Indices 30830 -- 31329
TTTATTTGTGTGGATAAATCGTATACAAATACACCCCAGGTAAGAGCTTCGCTCCTCGGTAAACG
CTCAAAACTACCCATACCAATGGGACAAGCCTGTCATAATCTTCAGCCTAGCTCCAGCCCGTGTT
CTTTCACGTCCACCCCACCAGCGTCAAAATCACCTTCAGTAATCTCCTCTGCCCCCACCCAACAC
CTCAGATACCATATTATTACCGTTACATACTCGTTATCATTAGTTACTCCTTCTCTTCCGTGATC
AGCTCCGCCTCCTTCAAAATCGTGTCCATTTTCGCATCTAACTCGTCAAGCATCCGTTCGAGCTG
GGAGGCCTTGGACTCGGCATCGGCAATCTGCTTGTAGGTGTCGGCAATGTTGGCCGCAGAGTCGC
CCACGTCGGTGTTCCCGTTAGTCTCCTCCTGTGTCATATGGGTGGTGTAGGGATGGTGGTGTTTA
CGTGGTGCGGCTCACGTGATGGGTCCGACGGAAGTGACGGTAGGA
Found at i:34696 original size:16 final size:16
Alignment explanation
Indices: 34672--34724 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
34662 GAAGGTAATA
*
34672 TCTCTAGGTTAGAGGG
1 TCTCCAGGTTAGAGGG
* **
34688 TCTCCAGGTTAGTGAT
1 TCTCCAGGTTAGAGGG
*
34704 TCTTCAGGTTAGA-GG
1 TCTCCAGGTTAGAGGG
34719 TCTCCA
1 TCTCCA
34725 CGACAGTCAC
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
15 5 0.18
16 23 0.82
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (16 bp):
TCTCCAGGTTAGAGGG
Left flanking sequence: Indices 34172 -- 34671
TGTAGTTGAGACTATCTTGATTTAGTGAAAAGATAAAGAATACTGCTATGAATGACCATCCACCG
AAGGCCAGCCCACCGGCTGGTAATGTTTTCAACCCAAATTACGACAGTTCTTCGGGAGGCTATTA
GTTTACTAGTGACGTTTGCAATCTCCCCGAAGTAGAATTGTAGCAGCCATTTGACGCAAATAAGC
GTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCTGAGACAGGCCACTTTCACTAAGGAC
ATAGCACGTCTTGCCTCACCATCACGCTCACTGGGTGTCTAGCGGTGATGCACAGATATGGATTG
CTGCTGTGACTGTCCCTACGCCTAAGACCAGCCTACTTGCCGAGCAGGAAACTAACCACCGGCTG
GTAAAGGTTTTCACAGTATGTATTGACACATATTGAATTTACGAGGTGGCTGCAAATTACCCAGG
CTGCAAATTATCCAACGAATGTCAAGAAAGACCATGAAGGTAATA
Right flanking sequence: Indices 34725 -- 35224
CGACAGTCACTGGACTGGCTTGACACACCAAGTGGAACCACAAAATGTCCGTCTCCGTGTTCCCC
TCTGTTACCGTTGTCGTTCAACCCCAGCAGCGATAGTGCGACGAGTGTACACCTACCAGTTCTAC
ACGTTGTTCAGTGTGGCTGAGCCCTATTATATTTATTACTGAATGCTCTCGTCTATGGATATCTA
ATTGCTGAGCACGCTGTTCGCCGACACAATGCGGGCGCCACTGACCACACGGGTCAGCCGCGCGT
AGTACAACTCGCCCGACACCACGATGTCCGCCTTGGAGTCGTCCTCGGTCTCGTCGTAGATAGTC
GCGTCGCTCAGGTCCAGCACCTCCACGTCGTACTTGACCGAGGGGTCGTACTGCGGGATCTGGGG
CGCAAACCGGTACAGCGCCGGCGTCTCGTACTCCGCAGGCGTCTCGTACTCCGCGTAGGGCTGGT
AGCGCACGGCTTCCTCGTCGTCGTCGCTCTCCTCGTCCTCCTCCA
Found at i:35155 original size:18 final size:18
Alignment explanation
Indices: 35134--35168 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
35124 GTACAGCGCC
35134 GGCGTCTCGTACTCCGCA
1 GGCGTCTCGTACTCCGCA
35152 GGCGTCTCGTACTCCGC
1 GGCGTCTCGTACTCCGC
35169 GTAGGGCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.40, G:0.29, T:0.23
Consensus pattern (18 bp):
GGCGTCTCGTACTCCGCA
Left flanking sequence: Indices 34634 -- 35133
TTATCCAACGAATGTCAAGAAAGACCATGAAGGTAATATCTCTAGGTTAGAGGGTCTCCAGGTTA
GTGATTCTTCAGGTTAGAGGTCTCCACGACAGTCACTGGACTGGCTTGACACACCAAGTGGAACC
ACAAAATGTCCGTCTCCGTGTTCCCCTCTGTTACCGTTGTCGTTCAACCCCAGCAGCGATAGTGC
GACGAGTGTACACCTACCAGTTCTACACGTTGTTCAGTGTGGCTGAGCCCTATTATATTTATTAC
TGAATGCTCTCGTCTATGGATATCTAATTGCTGAGCACGCTGTTCGCCGACACAATGCGGGCGCC
ACTGACCACACGGGTCAGCCGCGCGTAGTACAACTCGCCCGACACCACGATGTCCGCCTTGGAGT
CGTCCTCGGTCTCGTCGTAGATAGTCGCGTCGCTCAGGTCCAGCACCTCCACGTCGTACTTGACC
GAGGGGTCGTACTGCGGGATCTGGGGCGCAAACCGGTACAGCGCC
Right flanking sequence: Indices 35169 -- 35668
GTAGGGCTGGTAGCGCACGGCTTCCTCGTCGTCGTCGCTCTCCTCGTCCTCCTCCACCACGCGGG
ACATCTCGTAGCTCAGGTACCGCTGGGCAAAGCTCGGGGGCTCCAGCAACAAGTGGCGGGTGGAG
AACAGCCGCTCCAACTCGTCGCCAAGCGCCAGCGCGTACATCAGCGGCGTCACCAGCTGGACCAG
CTCCAGCCGCGGGAGCTCGCGCTTGACCTCGTCCGGAGAAATGGTAAAGTCCCGGTCGAAGTAGG
TCACAAAGTCGTCGACGAGGCCCAGGTGGATCGAGTGGTCGAGGGTGGATTCGCCGCTGGCAAGA
CGCAGCGGGACGTGGCCACCAGAGGACACGCGGGGAGCAGAAGCAGCCACGGGAGCTCCCGAAAC
CGCCCGAGAACCGGGCTTGGAGCCATGGAAACCAGGCTTGGAGCCATGGAAACCGGGCTTGGAGC
CATGGAAACCACGCTTGGAGCCCTGAGAGCTCGTTCTCGACCCCT
Found at i:35596 original size:21 final size:21
Alignment explanation
Indices: 35567--35645 Score: 131
Period size: 21 Copynumber: 3.8 Consensus size: 21
35557 ACCGCCCGAG
*
35567 AACCGGGCTTGGAGCCATGGA
1 AACCAGGCTTGGAGCCATGGA
35588 AACCAGGCTTGGAGCCATGGA
1 AACCAGGCTTGGAGCCATGGA
*
35609 AACCGGGCTTGGAGCCATGGA
1 AACCAGGCTTGGAGCCATGGA
*
35630 AACCACGCTTGGAGCC
1 AACCAGGCTTGGAGCC
35646 CTGAGAGCTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (21 bp):
AACCAGGCTTGGAGCCATGGA
Left flanking sequence: Indices 35067 -- 35566
CACCTCCACGTCGTACTTGACCGAGGGGTCGTACTGCGGGATCTGGGGCGCAAACCGGTACAGCG
CCGGCGTCTCGTACTCCGCAGGCGTCTCGTACTCCGCGTAGGGCTGGTAGCGCACGGCTTCCTCG
TCGTCGTCGCTCTCCTCGTCCTCCTCCACCACGCGGGACATCTCGTAGCTCAGGTACCGCTGGGC
AAAGCTCGGGGGCTCCAGCAACAAGTGGCGGGTGGAGAACAGCCGCTCCAACTCGTCGCCAAGCG
CCAGCGCGTACATCAGCGGCGTCACCAGCTGGACCAGCTCCAGCCGCGGGAGCTCGCGCTTGACC
TCGTCCGGAGAAATGGTAAAGTCCCGGTCGAAGTAGGTCACAAAGTCGTCGACGAGGCCCAGGTG
GATCGAGTGGTCGAGGGTGGATTCGCCGCTGGCAAGACGCAGCGGGACGTGGCCACCAGAGGACA
CGCGGGGAGCAGAAGCAGCCACGGGAGCTCCCGAAACCGCCCGAG
Right flanking sequence: Indices 35646 -- 36145
CTGAGAGCTCGTTCTCGACCCCTGGCTCACGTGGCGTTCGGCCCCGCTCACTTGGCGTTTGTAGG
TGGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCTCGGGCCCGGGCTCCTCG
TGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCCACCGGCACCGCGTCCACGCA
GTCGCCCTGCTTCACGAACAACGACGAGTTGTCGCGGGTCACCTGCTCCCAGTTGGAGCCGCCGT
CCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGAGGGTGGCGCCCGAGGGA
GCACGCCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATTTTTTGGGCTCGGGCGC
CACCAGCGGCATCAGCACGTCGCGGACGAGCGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCT
GGCGCAGCGTGGGCGCGGTGGACGGCTGGGAGCCGGGAGCCAGCG
Found at i:36156 original size:24 final size:24
Alignment explanation
Indices: 36129--36185 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
36119 TGGACGGCTG
*
36129 GGAGCCGGGAGCCAGCGTGGGAGC
1 GGAGCCGGGAGCCAGCGAGGGAGC
* *
36153 GGAGCCAGGAGTCAGCGAGGGAGC
1 GGAGCCGGGAGCCAGCGAGGGAGC
*
36177 CGAGCCGGG
1 GGAGCCGGG
36186 GGCCGATCCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.25, G:0.53, T:0.04
Consensus pattern (24 bp):
GGAGCCGGGAGCCAGCGAGGGAGC
Left flanking sequence: Indices 35629 -- 36128
AAACCACGCTTGGAGCCCTGAGAGCTCGTTCTCGACCCCTGGCTCACGTGGCGTTCGGCCCCGCT
CACTTGGCGTTTGTAGGTGGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCT
CGGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCCACC
GGCACCGCGTCCACGCAGTCGCCCTGCTTCACGAACAACGACGAGTTGTCGCGGGTCACCTGCTC
CCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGA
GGGTGGCGCCCGAGGGAGCACGCCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGAT
TTTTTGGGCTCGGGCGCCACCAGCGGCATCAGCACGTCGCGGACGAGCGTCAGGGCCATGCGGTC
GACGTTGGCCAGCAGCTGGCGCAGCGTGGGCGCGGTGGACGGCTG
Right flanking sequence: Indices 36186 -- 36685
GGCCGATCCCGGAGCCGAGCCCGGAGCCAGGTTGGGAACAGACCCAGGAACCAGGTTGGGAACGG
TCCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCTCGGGAGCCAGATTCGGAACCAGGTTG
GGAGCACTCCCCGGCGCCAGCGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGC
CACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGT
CCGCCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTCTGGCGCGGCTCGTGGTGGATC
TGGGTCTGGTCGAGCTCGCTGGCGTGGTCGCCACTCTGGTTGGCGTGGAGCTCGCTCTGGTTGGC
GTGGAGCCCATTCTGGCTGGCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCG
TCTGGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCA
Found at i:36190 original size:12 final size:12
Alignment explanation
Indices: 36172--36213 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
36162 AGTCAGCGAG
*
36172 GGAGCCGAGCCG
1 GGAGCCGAGCCC
* *
36184 GGGGCCGATCCC
1 GGAGCCGAGCCC
36196 GGAGCCGAGCCC
1 GGAGCCGAGCCC
36208 GGAGCC
1 GGAGCC
36214 AGGTTGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.14, C:0.38, G:0.45, T:0.02
Consensus pattern (12 bp):
GGAGCCGAGCCC
Left flanking sequence: Indices 35672 -- 36171
TCACGTGGCGTTCGGCCCCGCTCACTTGGCGTTTGTAGGTGGGGATGGGGCCGGGAACAGAGTAC
ATGAGCGGCGCCGCCTTGGGCTCGGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCG
CGAGCCCGGCCGCGAGCCCACCGGCACCGCGTCCACGCAGTCGCCCTGCTTCACGAACAACGACG
AGTTGTCGCGGGTCACCTGCTCCCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGAC
GGCAGCTCGGGCATCAGCGCGAGGGTGGCGCCCGAGGGAGCACGCCCGCCCACCGAGTGCCACGG
CAAGTCCACCTTGAAGAGCGATTTTTTGGGCTCGGGCGCCACCAGCGGCATCAGCACGTCGCGGA
CGAGCGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCTGGCGCAGCGTGGGCGCGGTGGACGGC
TGGGAGCCGGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCAGCGAG
Right flanking sequence: Indices 36214 -- 36713
AGGTTGGGAACAGACCCAGGAACCAGGTTGGGAACGGTCCCAGGAACCAGGTTGGGAACCAGGTT
GGAAGCGGTCTCGGGAGCCAGATTCGGAACCAGGTTGGGAGCACTCCCCGGCGCCAGCGGCTGCT
TCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCACCGTGGAGTAGCCCATGGCACTGCGG
TGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCGCCAACGGGTGCACCAACGGACGCGC
TGGCTCGTGGTGGGTCTGGCGCGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGCGTGGT
CGCCACTCTGGTTGGCGTGGAGCTCGCTCTGGTTGGCGTGGAGCCCATTCTGGCTGGCGTACGCC
TGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCGTCTGGACCCGTGCCTGTTGTGCGGCCGC
CAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTTTCGGG
Found at i:36244 original size:24 final size:24
Alignment explanation
Indices: 36212--36272 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
36202 GAGCCCGGAG
36212 CCAGGTTGGGAACAGACCCAGGAA
1 CCAGGTTGGGAACAGACCCAGGAA
* *
36236 CCAGGTTGGGAACGGTCCCAGGAA
1 CCAGGTTGGGAACAGACCCAGGAA
36260 CCAGGTTGGGAAC
1 CCAGGTTGGGAAC
36273 CAGGTTGGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.25, G:0.36, T:0.11
Consensus pattern (24 bp):
CCAGGTTGGGAACAGACCCAGGAA
Left flanking sequence: Indices 35712 -- 36211
GGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCTCGGGCCCGGGCTCCTCGT
GCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCCACCGGCACCGCGTCCACGCAG
TCGCCCTGCTTCACGAACAACGACGAGTTGTCGCGGGTCACCTGCTCCCAGTTGGAGCCGCCGTC
CGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGAGGGTGGCGCCCGAGGGAG
CACGCCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATTTTTTGGGCTCGGGCGCC
ACCAGCGGCATCAGCACGTCGCGGACGAGCGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCTG
GCGCAGCGTGGGCGCGGTGGACGGCTGGGAGCCGGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCA
GCGAGGGAGCCGAGCCGGGGGCCGATCCCGGAGCCGAGCCCGGAG
Right flanking sequence: Indices 36273 -- 36772
CAGGTTGGAAGCGGTCTCGGGAGCCAGATTCGGAACCAGGTTGGGAGCACTCCCCGGCGCCAGCG
GCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCACCGTGGAGTAGCCCATGGCA
CTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCGCCAACGGGTGCACCAACGG
ACGCGCTGGCTCGTGGTGGGTCTGGCGCGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGG
CGTGGTCGCCACTCTGGTTGGCGTGGAGCTCGCTCTGGTTGGCGTGGAGCCCATTCTGGCTGGCG
TACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCGTCTGGACCCGTGCCTGTTGTGC
GGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTTTCGGGCGACTGCGGCAACA
CCAGCGGTCTCACCGTCTTCAGCCGGAGTGCGGGCGCGGGCGAGT
Found at i:36271 original size:12 final size:12
Alignment explanation
Indices: 36256--36318 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
36246 AACGGTCCCA
36256 GGAACCAGGTTG
1 GGAACCAGGTTG
36268 GGAACCAGGTT-
1 GGAACCAGGTTG
*
36279 GGAAGC-GGTCTCG
1 GGAACCAGGT-T-G
* * *
36292 GGAGCCAGATTC
1 GGAACCAGGTTG
36304 GGAACCAGGTTG
1 GGAACCAGGTTG
36316 GGA
1 GGA
36319 GCACTCCCCG
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
10 3 0.08
11 6 0.15
12 23 0.59
13 5 0.13
14 2 0.05
ACGTcount: A:0.24, C:0.19, G:0.41, T:0.16
Consensus pattern (12 bp):
GGAACCAGGTTG
Left flanking sequence: Indices 35756 -- 36255
GCTCGGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCC
ACCGGCACCGCGTCCACGCAGTCGCCCTGCTTCACGAACAACGACGAGTTGTCGCGGGTCACCTG
CTCCCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCG
CGAGGGTGGCGCCCGAGGGAGCACGCCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGC
GATTTTTTGGGCTCGGGCGCCACCAGCGGCATCAGCACGTCGCGGACGAGCGTCAGGGCCATGCG
GTCGACGTTGGCCAGCAGCTGGCGCAGCGTGGGCGCGGTGGACGGCTGGGAGCCGGGAGCCAGCG
TGGGAGCGGAGCCAGGAGTCAGCGAGGGAGCCGAGCCGGGGGCCGATCCCGGAGCCGAGCCCGGA
GCCAGGTTGGGAACAGACCCAGGAACCAGGTTGGGAACGGTCCCA
Right flanking sequence: Indices 36319 -- 36818
GCACTCCCCGGCGCCAGCGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCAC
CGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCG
CCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTCTGGCGCGGCTCGTGGTGGATCTGG
GTCTGGTCGAGCTCGCTGGCGTGGTCGCCACTCTGGTTGGCGTGGAGCTCGCTCTGGTTGGCGTG
GAGCCCATTCTGGCTGGCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCGTCT
GGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTT
TCGGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGCCGGAGTGCGGGCGCGGGCGAGTA
CAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAAACGTGTC
Found at i:36335 original size:36 final size:36
Alignment explanation
Indices: 36232--36320 Score: 115
Period size: 36 Copynumber: 2.5 Consensus size: 36
36222 AACAGACCCA
* * * *
36232 GGAACCAGGTTGGGAACGGTCCCAGGAACCAGGTTG
1 GGAACCAGGTTGGGAGCGGTCCCAGGAGCCAGATTC
* * *
36268 GGAACCAGGTTGGAAGCGGTCTCGGGAGCCAGATTC
1 GGAACCAGGTTGGGAGCGGTCCCAGGAGCCAGATTC
36304 GGAACCAGGTTGGGAGC
1 GGAACCAGGTTGGGAGC
36321 ACTCCCCGGC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.24, C:0.21, G:0.40, T:0.15
Consensus pattern (36 bp):
GGAACCAGGTTGGGAGCGGTCCCAGGAGCCAGATTC
Left flanking sequence: Indices 35732 -- 36231
AGTACATGAGCGGCGCCGCCTTGGGCTCGGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCC
ATCCGCGAGCCCGGCCGCGAGCCCACCGGCACCGCGTCCACGCAGTCGCCCTGCTTCACGAACAA
CGACGAGTTGTCGCGGGTCACCTGCTCCCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGA
ACGACGGCAGCTCGGGCATCAGCGCGAGGGTGGCGCCCGAGGGAGCACGCCCGCCCACCGAGTGC
CACGGCAAGTCCACCTTGAAGAGCGATTTTTTGGGCTCGGGCGCCACCAGCGGCATCAGCACGTC
GCGGACGAGCGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCTGGCGCAGCGTGGGCGCGGTGG
ACGGCTGGGAGCCGGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCAGCGAGGGAGCCGAGCCGGGG
GCCGATCCCGGAGCCGAGCCCGGAGCCAGGTTGGGAACAGACCCA
Right flanking sequence: Indices 36321 -- 36820
ACTCCCCGGCGCCAGCGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCACCG
TGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCGCC
AACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTCTGGCGCGGCTCGTGGTGGATCTGGGT
CTGGTCGAGCTCGCTGGCGTGGTCGCCACTCTGGTTGGCGTGGAGCTCGCTCTGGTTGGCGTGGA
GCCCATTCTGGCTGGCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCGTCTGG
ACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTTTC
GGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGCCGGAGTGCGGGCGCGGGCGAGTACA
AGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAAACGTGTCAG
Found at i:36499 original size:21 final size:22
Alignment explanation
Indices: 36470--36513 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
36460 ACCAACGGAC
*
36470 GCGCTGGCTCGTGGTGGGTCTG
1 GCGCTGGCTCGTGGTGGATCTG
36492 GCGC-GGCTCGTGGTGGATCTG
1 GCGCTGGCTCGTGGTGGATCTG
36513 G
1 G
36514 GTCTGGTCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.02, C:0.23, G:0.50, T:0.25
Consensus pattern (22 bp):
GCGCTGGCTCGTGGTGGATCTG
Left flanking sequence: Indices 35970 -- 36469
AGCACGCCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATTTTTTGGGCTCGGGCG
CCACCAGCGGCATCAGCACGTCGCGGACGAGCGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGC
TGGCGCAGCGTGGGCGCGGTGGACGGCTGGGAGCCGGGAGCCAGCGTGGGAGCGGAGCCAGGAGT
CAGCGAGGGAGCCGAGCCGGGGGCCGATCCCGGAGCCGAGCCCGGAGCCAGGTTGGGAACAGACC
CAGGAACCAGGTTGGGAACGGTCCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCTCGGGA
GCCAGATTCGGAACCAGGTTGGGAGCACTCCCCGGCGCCAGCGGCTGCTTCGACGACGGCGCCGA
GTGCGCAGCCACCATCGCCGCCACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCT
CGGTGGCCTTGCGCACGGGGTCCGCCAACGGGTGCACCAACGGAC
Right flanking sequence: Indices 36514 -- 37013
GTCTGGTCGAGCTCGCTGGCGTGGTCGCCACTCTGGTTGGCGTGGAGCTCGCTCTGGTTGGCGTG
GAGCCCATTCTGGCTGGCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCGTCT
GGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTT
TCGGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGCCGGAGTGCGGGCGCGGGCGAGTA
CAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAAACGTGTCAGGAATGTTCTTCTGGGCCA
GCTCGGACCGCGTGGGGCCCTGGGCAGAGGCACGGGCGGCACGGGGTGCTTCCGGAGCCGTGGTG
TGGTTGGTTTTGGTCTTCCCGTGGGTCTTCCCCTGGTCCGTCTTGCTCTGTTTCGGCCCCTGGTC
GCTCTGGGCGCCCAGTTTGCGTTTGATGCCCGAGAAGAGCGACGA
Found at i:36556 original size:21 final size:21
Alignment explanation
Indices: 36542--36598 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
36532 GCGTGGTCGC
36542 CACTCTGGTTGGCGTGGAGCT
1 CACTCTGGTTGGCGTGGAGCT
* *
36563 CGCTCTGGTTGGCGTGGAGCC
1 CACTCTGGTTGGCGTGGAGCT
* *
36584 CATTCTGGCTGGCGT
1 CACTCTGGTTGGCGT
36599 ACGCCTGTGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.07, C:0.26, G:0.39, T:0.28
Consensus pattern (21 bp):
CACTCTGGTTGGCGTGGAGCT
Left flanking sequence: Indices 36042 -- 36541
CGGCATCAGCACGTCGCGGACGAGCGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCTGGCGCA
GCGTGGGCGCGGTGGACGGCTGGGAGCCGGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCAGCGAG
GGAGCCGAGCCGGGGGCCGATCCCGGAGCCGAGCCCGGAGCCAGGTTGGGAACAGACCCAGGAAC
CAGGTTGGGAACGGTCCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCTCGGGAGCCAGAT
TCGGAACCAGGTTGGGAGCACTCCCCGGCGCCAGCGGCTGCTTCGACGACGGCGCCGAGTGCGCA
GCCACCATCGCCGCCACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGC
CTTGCGCACGGGGTCCGCCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTCTGGCGCG
GCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGCGTGGTCGC
Right flanking sequence: Indices 36599 -- 37098
ACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAGCGTCTGGACCCGTGCCTGTTGTGCG
GCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTTTCGGGCGACTGCGGCAACAC
CAGCGGTCTCACCGTCTTCAGCCGGAGTGCGGGCGCGGGCGAGTACAAGTGCTCGTACTCGTGGG
TGGTGCCTCGGGGGACAAACGTGTCAGGAATGTTCTTCTGGGCCAGCTCGGACCGCGTGGGGCCC
TGGGCAGAGGCACGGGCGGCACGGGGTGCTTCCGGAGCCGTGGTGTGGTTGGTTTTGGTCTTCCC
GTGGGTCTTCCCCTGGTCCGTCTTGCTCTGTTTCGGCCCCTGGTCGCTCTGGGCGCCCAGTTTGC
GTTTGATGCCCGAGAAGAGCGACGAGATGAATGAGCGCCGCTTCTTCGGGGTGGGAGTAGCCTCG
GTGGTCTCAGAAACCACCTGGGGGGCCTTAGCTTTCAGCTTCTCC
Found at i:37185 original size:12 final size:12
Alignment explanation
Indices: 37165--37200 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
37155 CGCCACCCCG
* *
37165 GTGGTCGTCTCT
1 GTGGCCGTCTCC
37177 GTGGCCGTCTCC
1 GTGGCCGTCTCC
37189 GTGGCCGTCTCC
1 GTGGCCGTCTCC
37201 ACGCCTGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.33, T:0.31
Consensus pattern (12 bp):
GTGGCCGTCTCC
Left flanking sequence: Indices 36665 -- 37164
CCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGGGGTTTTCGGGCGACTGCGGCAACACC
AGCGGTCTCACCGTCTTCAGCCGGAGTGCGGGCGCGGGCGAGTACAAGTGCTCGTACTCGTGGGT
GGTGCCTCGGGGGACAAACGTGTCAGGAATGTTCTTCTGGGCCAGCTCGGACCGCGTGGGGCCCT
GGGCAGAGGCACGGGCGGCACGGGGTGCTTCCGGAGCCGTGGTGTGGTTGGTTTTGGTCTTCCCG
TGGGTCTTCCCCTGGTCCGTCTTGCTCTGTTTCGGCCCCTGGTCGCTCTGGGCGCCCAGTTTGCG
TTTGATGCCCGAGAAGAGCGACGAGATGAATGAGCGCCGCTTCTTCGGGGTGGGAGTAGCCTCGG
TGGTCTCAGAAACCACCTGGGGGGCCTTAGCTTTCAGCTTCTCCTTCTTTGGCGACTCCACGTAC
CCGACGCTCGCCATGTTGGCCACGGTGGCCGTCTCCGCCACCCCG
Right flanking sequence: Indices 37201 -- 37700
ACGCCTGTGGCTGCCCCCCTGGCCGTCTCTGTGGTCTCATGACTTGCTCCGCGTGCTTTCTCCTT
CCGCCGCACCACCGTCCCGCTGCGGTTCCACTCGGGCTCCTTCTGCGCCACCGGGTACGCCACGG
GACTGTACGCCTTCACCGCGTACGGACGGGTCTCGGTGCAGAAGTGCTCGACGCCACTAGCGGTC
AGCTCTATCATCAGCACCGACACCGCGCCCACGCTGTCCCCGAGCGTCTTGTAGTACTGGGCCAC
CATTTTGCGCACGAACCGCGGCAACTCCGCGGCCCCGATCACCTTGGGCGCCACCACCACCAGCC
CCAGCCGGTTCTGGGCTGCCACCACGAGGCAGTCGAGGTCGTCCTCGCAGATGTGCGCGGTGACC
ACCGCCTCCACCGCAGGGTGCGAGTCCAAGAACCCGCCCATCTCCGCCAGATCAAGCACCTCCAA
GCAGAGCGCGATGGGCAGCTTGCAGAGCTCGTCGTTGTAGGCGTC
Found at i:40917 original size:40 final size:40
Alignment explanation
Indices: 40867--40995 Score: 204
Period size: 40 Copynumber: 3.2 Consensus size: 40
40857 ATGAGGCAGC
* *
40867 CCCATAGTCAACCTATTTATACCTGGAATTACTGAAGCAT
1 CCCATGGTCAACCTATTTATATCTGGAATTACTGAAGCAT
* * *
40907 CCCATGGTCAACCTATTAATGTCTGGAATTAGTGAAGCAT
1 CCCATGGTCAACCTATTTATATCTGGAATTACTGAAGCAT
*
40947 CCCATGGTCAACCTATTTATATCTGAAATTACTGAAGCAT
1 CCCATGGTCAACCTATTTATATCTGGAATTACTGAAGCAT
40987 CCCATGGTC
1 CCCATGGTC
40996 TACTAATGTC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (40 bp):
CCCATGGTCAACCTATTTATATCTGGAATTACTGAAGCAT
Left flanking sequence: Indices 40367 -- 40866
ACCTAATGTGTGACCAATACGGACAGCAACCGGTAAACAATAGAATGTGGAACAGAGGTAAACAT
GGGGAGGGAGAAGGGTGGAGGGAGAGGGTGTGGATGGAATAGACGGTAATAAGGTTGGGTGTAGC
AGTGGGGAATTAGACGGGGGGGAGATGAGGGTTTAGACAAGGGTTTAGACGACAGCACTATTACT
TGGCAGGGGCCATAGAGGCGAGCCCGATCCACAATGGACCCTGTCTGAATCACGCTGCGAACAGA
CATAATGCAAGGAGGCACGACATTGGAAGCTGGGGAGGAGTAGATGAAAACATTGCTGGTTTCAA
TGGCAATCTGGGAGCGAAGTAGGGATGAAGGCAATTGTGAAAGAGGGTTATGGGGGTAGAGTTGG
AACAGAAGCGGTATGTATGAAGACTTTACTTGTAGTATCGTATTAGTGCAATGGAATTACAGAAA
CATTCCCATGGTAAACCTCTAAATGTCTGAAATCAATGAGGCAGC
Right flanking sequence: Indices 40996 -- 41495
TACTAATGTCTGAAATTCATAAACCACGTATTAGTTAAGCTCACGCACAGGCAGATGAAGAACCA
CCGGGATATCATGGGTTCCTAGACGGCGAGATAATGAACTTGATTGGGCTGGTTTAAAGAACAGA
TATTGCGCGTAGTGAATGATTTAGGTCTATTTTGGCCATTGGGTTGGAAGCCTCGCCATTTCCTC
GAGACTTGCTGCCACCATTGTTCTCCACACTAGCCGTGTCATTGTTTATCCTCACTGTTGAAGTG
TTATCCAGGTATGTGGTTACCAAGTTATTAGTTGATAGAGAAGGCTCTCCAGGTATTGGGGTACC
AGCCATGGCTGAGAGTGCTAATTGTTTGCCACATAACCACTCATAGTCCAAATGTAGCTCGTTGG
TTCGCCTAACTAACGGTTCTGTAATAAGAGTGTTGTAACTTGATAAACCCGTAGGATCAACGTGT
GTTAAGATAGATAAAGAGGCGTATCTACACCAGAAGACTGGTAAG
Found at i:40977 original size:80 final size:81
Alignment explanation
Indices: 40811--40995 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 81
40801 AGTGCAATGG
* * * * *
40811 AATTACAGAAACATTCCCATGGTAAACCTCTAAATGTCTGAAATCAATGAGGCAGCCCCATAGTC
1 AATTACTGAAGCA-TCCCATGGTCAACCTATAAATGTCTGAAATCAATGAAGCAGCCCCATAGTC
*
40876 AACCTATTTATACCTGG
65 AACCTATTTATACCTGA
* * * * * *
40893 AATTACTGAAGCATCCCATGGTCAACCTATTAATGTCTGGAATTAGTGAAGCA-TCCCATGGTCA
1 AATTACTGAAGCATCCCATGGTCAACCTATAAATGTCTGAAATCAATGAAGCAGCCCCATAGTCA
*
40957 ACCTATTTATATCTGA
66 ACCTATTTATACCTGA
40973 AATTACTGAAGCATCCCATGGTC
1 AATTACTGAAGCATCCCATGGTC
40996 TACTAATGTC
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 46 0.51
81 33 0.37
82 11 0.12
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (81 bp):
AATTACTGAAGCATCCCATGGTCAACCTATAAATGTCTGAAATCAATGAAGCAGCCCCATAGTCA
ACCTATTTATACCTGA
Left flanking sequence: Indices 40311 -- 40810
TGGCCATGTGTGTCCCAATCGGGTTGGCAAAGGGCACGCCTGACGATGGCGGACGAACCTAATGT
GTGACCAATACGGACAGCAACCGGTAAACAATAGAATGTGGAACAGAGGTAAACATGGGGAGGGA
GAAGGGTGGAGGGAGAGGGTGTGGATGGAATAGACGGTAATAAGGTTGGGTGTAGCAGTGGGGAA
TTAGACGGGGGGGAGATGAGGGTTTAGACAAGGGTTTAGACGACAGCACTATTACTTGGCAGGGG
CCATAGAGGCGAGCCCGATCCACAATGGACCCTGTCTGAATCACGCTGCGAACAGACATAATGCA
AGGAGGCACGACATTGGAAGCTGGGGAGGAGTAGATGAAAACATTGCTGGTTTCAATGGCAATCT
GGGAGCGAAGTAGGGATGAAGGCAATTGTGAAAGAGGGTTATGGGGGTAGAGTTGGAACAGAAGC
GGTATGTATGAAGACTTTACTTGTAGTATCGTATTAGTGCAATGG
Right flanking sequence: Indices 40996 -- 41495
TACTAATGTCTGAAATTCATAAACCACGTATTAGTTAAGCTCACGCACAGGCAGATGAAGAACCA
CCGGGATATCATGGGTTCCTAGACGGCGAGATAATGAACTTGATTGGGCTGGTTTAAAGAACAGA
TATTGCGCGTAGTGAATGATTTAGGTCTATTTTGGCCATTGGGTTGGAAGCCTCGCCATTTCCTC
GAGACTTGCTGCCACCATTGTTCTCCACACTAGCCGTGTCATTGTTTATCCTCACTGTTGAAGTG
TTATCCAGGTATGTGGTTACCAAGTTATTAGTTGATAGAGAAGGCTCTCCAGGTATTGGGGTACC
AGCCATGGCTGAGAGTGCTAATTGTTTGCCACATAACCACTCATAGTCCAAATGTAGCTCGTTGG
TTCGCCTAACTAACGGTTCTGTAATAAGAGTGTTGTAACTTGATAAACCCGTAGGATCAACGTGT
GTTAAGATAGATAAAGAGGCGTATCTACACCAGAAGACTGGTAAG
Found at i:41783 original size:12 final size:12
Alignment explanation
Indices: 41763--41793 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
41753 TGCCCGCCGT
*
41763 GCTCATACCCGC
1 GCTCGTACCCGC
41775 GCTCGTACCCGC
1 GCTCGTACCCGC
41787 GCTCGTA
1 GCTCGTA
41794 GCCGGGCCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.45, G:0.23, T:0.19
Consensus pattern (12 bp):
GCTCGTACCCGC
Left flanking sequence: Indices 41263 -- 41762
GGTATGTGGTTACCAAGTTATTAGTTGATAGAGAAGGCTCTCCAGGTATTGGGGTACCAGCCATG
GCTGAGAGTGCTAATTGTTTGCCACATAACCACTCATAGTCCAAATGTAGCTCGTTGGTTCGCCT
AACTAACGGTTCTGTAATAAGAGTGTTGTAACTTGATAAACCCGTAGGATCAACGTGTGTTAAGA
TAGATAAAGAGGCGTATCTACACCAGAAGACTGGTAAGTGGTTTAATAGAGAGAGCTTGGCTCCT
TAACCGCTACCTGCTTACCAATTGATAGACACCAAGTGATAACCAAACATGGCTAGTCACCTACA
GATAAACGCAGACACGGGAAATTTATGATACTCTATCACTTACGCTCTTTCCAACCGTCGTAGCC
TTCACTCACTGCGTGTGTACTCTCGCCTCATCTATTGTCTATAAGTCTATGCTAGTATCCCCACT
CGCGCGGTCTCCCCGTCTGTTCTTCTCCGTAACCGTGCCCGCCGT
Right flanking sequence: Indices 41794 -- 42293
GCCGGGCCCGCCGTGCTCGTAGCCGCGTCCGTACGCCTGGTCTTGGTAGTACTCGCGTCCGCCCT
GGTCAGGGCCCTGGCCAAAGCCCCGGTACCCTCCGTTGTAGTCCGGAGGACCCTGGGGACCCTGC
CCGTAGCCCTGGTAGCCTCCGTGAGACTCTGGGTAGCCACCGGGGCCGTCGCGACCGTAGCCACC
GGGACCGTCGCGGCCGTAGCCCGGGGGCGCACCGTAGCTCATGTCGCCACGGCCTTCGCCACGGC
CGTCGGGACCGCCGTACCCGTGGTGCTCCCACTGCGGGGGCGCGTCGTGGTCGTGCTTGAAGTGG
TGCTCGATCTTGTTGGCGGCAATCGCCCCCAAGAGAGCGCCTCCGATCTTACCCAACGTGCCCCC
GTTGCTCATCTTGTTGCCTGCGTAGCCTCCCACAGCGGCACCGCTGATGGTGGACAAGAGGCCCC
GCTCCTGCGGCGGGTGGTCGTCGTTAGCGTAGGGGTTGTGGTGGG
Found at i:41983 original size:24 final size:24
Alignment explanation
Indices: 41956--42009 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
41946 GAGACTCTGG
*
41956 GTAGCCACCGGGGCCGTCGCGACC
1 GTAGCCACCGGGACCGTCGCGACC
*
41980 GTAGCCACCGGGACCGTCGCGGCC
1 GTAGCCACCGGGACCGTCGCGACC
42004 GTAGCC
1 GTAGCC
42010 CGGGGGCGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.13, C:0.41, G:0.37, T:0.09
Consensus pattern (24 bp):
GTAGCCACCGGGACCGTCGCGACC
Left flanking sequence: Indices 41456 -- 41955
GATAGATAAAGAGGCGTATCTACACCAGAAGACTGGTAAGTGGTTTAATAGAGAGAGCTTGGCTC
CTTAACCGCTACCTGCTTACCAATTGATAGACACCAAGTGATAACCAAACATGGCTAGTCACCTA
CAGATAAACGCAGACACGGGAAATTTATGATACTCTATCACTTACGCTCTTTCCAACCGTCGTAG
CCTTCACTCACTGCGTGTGTACTCTCGCCTCATCTATTGTCTATAAGTCTATGCTAGTATCCCCA
CTCGCGCGGTCTCCCCGTCTGTTCTTCTCCGTAACCGTGCCCGCCGTGCTCATACCCGCGCTCGT
ACCCGCGCTCGTAGCCGGGCCCGCCGTGCTCGTAGCCGCGTCCGTACGCCTGGTCTTGGTAGTAC
TCGCGTCCGCCCTGGTCAGGGCCCTGGCCAAAGCCCCGGTACCCTCCGTTGTAGTCCGGAGGACC
CTGGGGACCCTGCCCGTAGCCCTGGTAGCCTCCGTGAGACTCTGG
Right flanking sequence: Indices 42010 -- 42509
CGGGGGCGCACCGTAGCTCATGTCGCCACGGCCTTCGCCACGGCCGTCGGGACCGCCGTACCCGT
GGTGCTCCCACTGCGGGGGCGCGTCGTGGTCGTGCTTGAAGTGGTGCTCGATCTTGTTGGCGGCA
ATCGCCCCCAAGAGAGCGCCTCCGATCTTACCCAACGTGCCCCCGTTGCTCATCTTGTTGCCTGC
GTAGCCTCCCACAGCGGCACCGCTGATGGTGGACAAGAGGCCCCGCTCCTGCGGCGGGTGGTCGT
CGTTAGCGTAGGGGTTGTGGTGGGGGTCCATTGGTGGTGTTGCCGCGGTTGCTGGCGTGTTTTAT
ACCCGGTGGAGGTGGCTGAGTGGGTGGCAGCTGGACCCGGTGGTGTCACGGCTTAGCAACAAGCC
CTGGTAAGCCCCAAAGGCTGTGCCGCGGGGCGTAGAACACAGCCTGGAGGAGATATGGCTGTCAT
ATGGTGTTTAACTGGTCGTTGGTAACACCGTGATTCAGCCACATG
Found at i:42593 original size:22 final size:21
Alignment explanation
Indices: 42556--42606 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
42546 CCATACCGTT
*
42556 GAACTGCCACTTAGCCACCCGC
1 GAAC-GCCCCTTAGCCACCCGC
*
42578 GAATCGCCCCTTAGCCACCCGT
1 GAA-CGCCCCTTAGCCACCCGC
42600 GAACGCC
1 GAACGCC
42607 ACAGCCCCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 4 0.15
22 21 0.81
23 1 0.04
ACGTcount: A:0.22, C:0.45, G:0.20, T:0.14
Consensus pattern (21 bp):
GAACGCCCCTTAGCCACCCGC
Left flanking sequence: Indices 42056 -- 42555
TCGGGACCGCCGTACCCGTGGTGCTCCCACTGCGGGGGCGCGTCGTGGTCGTGCTTGAAGTGGTG
CTCGATCTTGTTGGCGGCAATCGCCCCCAAGAGAGCGCCTCCGATCTTACCCAACGTGCCCCCGT
TGCTCATCTTGTTGCCTGCGTAGCCTCCCACAGCGGCACCGCTGATGGTGGACAAGAGGCCCCGC
TCCTGCGGCGGGTGGTCGTCGTTAGCGTAGGGGTTGTGGTGGGGGTCCATTGGTGGTGTTGCCGC
GGTTGCTGGCGTGTTTTATACCCGGTGGAGGTGGCTGAGTGGGTGGCAGCTGGACCCGGTGGTGT
CACGGCTTAGCAACAAGCCCTGGTAAGCCCCAAAGGCTGTGCCGCGGGGCGTAGAACACAGCCTG
GAGGAGATATGGCTGTCATATGGTGTTTAACTGGTCGTTGGTAACACCGTGATTCAGCCACATGT
GTTGTATGTCTGAACACTGTTGAACTACCGCTTAGCCATACCGTT
Right flanking sequence: Indices 42607 -- 43106
ACAGCCCCGTGAATTGCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTACAA
CGCCTACGACGTGATCCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGAATGTGT
ACAATGGACCGACCATCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTGCCA
TGCTATGGTCCGCTTTTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAATCT
CCAGCCTCCTAGCCTCGTTCTATCAACATTTTATGCTCATGCCTAGCCTCTTTCACTCTAGCTTC
TTTCACTCCAGCTTCTTCCTTCTAGCTTCTTTCAATTCAGCTTTTTCGTTCTACCAACAGCTTCC
TATCTTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTCAAGGTCAGTCTATG
CTCATGGTCAGCCTATGCTCATGCCCAGCTATGCTCATGCCCAGC
Found at i:42617 original size:17 final size:18
Alignment explanation
Indices: 42595--42630 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
42585 CCCTTAGCCA
42595 CCCGTGAA-CGCCACAGC
1 CCCGTGAATCGCCACAGC
*
42612 CCCGTGAATTGCCACAGC
1 CCCGTGAATCGCCACAGC
42630 C
1 C
42631 ACCCGTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.22, C:0.44, G:0.22, T:0.11
Consensus pattern (18 bp):
CCCGTGAATCGCCACAGC
Left flanking sequence: Indices 42095 -- 42594
GCGTCGTGGTCGTGCTTGAAGTGGTGCTCGATCTTGTTGGCGGCAATCGCCCCCAAGAGAGCGCC
TCCGATCTTACCCAACGTGCCCCCGTTGCTCATCTTGTTGCCTGCGTAGCCTCCCACAGCGGCAC
CGCTGATGGTGGACAAGAGGCCCCGCTCCTGCGGCGGGTGGTCGTCGTTAGCGTAGGGGTTGTGG
TGGGGGTCCATTGGTGGTGTTGCCGCGGTTGCTGGCGTGTTTTATACCCGGTGGAGGTGGCTGAG
TGGGTGGCAGCTGGACCCGGTGGTGTCACGGCTTAGCAACAAGCCCTGGTAAGCCCCAAAGGCTG
TGCCGCGGGGCGTAGAACACAGCCTGGAGGAGATATGGCTGTCATATGGTGTTTAACTGGTCGTT
GGTAACACCGTGATTCAGCCACATGTGTTGTATGTCTGAACACTGTTGAACTACCGCTTAGCCAT
ACCGTTGAACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCA
Right flanking sequence: Indices 42631 -- 43130
ACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTACAACGCCTACGACGTGATCCAACCTTA
TGGACCACCTACGGATCCAGGACTTCCAACCAGGAATGTGTACAATGGACCGACCATCACGGCCG
AGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTGCCATGCTATGGTCCGCTTTTGTCCTCC
AGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAATCTCCAGCCTCCTAGCCTCGTTCTATC
AACATTTTATGCTCATGCCTAGCCTCTTTCACTCTAGCTTCTTTCACTCCAGCTTCTTCCTTCTA
GCTTCTTTCAATTCAGCTTTTTCGTTCTACCAACAGCTTCCTATCTTCCTATCAACAGCCTAAGC
CTCGTTCTCTATCAGCAGTTTATGCTCAAGGTCAGTCTATGCTCATGGTCAGCCTATGCTCATGC
CCAGCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTATGCTCA
Found at i:42933 original size:15 final size:15
Alignment explanation
Indices: 42909--42965 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
42899 ATGCTCATGC
*
42909 CTAGCCTCTTTCACT
1 CTAGCTTCTTTCACT
42924 CTAGCTTCTTTCACT
1 CTAGCTTCTTTCACT
*
42939 CCAGCTTC-TTC-CTT
1 CTAGCTTCTTTCAC-T
42953 CTAGCTTCTTTCA
1 CTAGCTTCTTTCA
42966 ATTCAGCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
13 1 0.03
14 11 0.31
15 24 0.67
ACGTcount: A:0.12, C:0.37, G:0.07, T:0.44
Consensus pattern (15 bp):
CTAGCTTCTTTCACT
Left flanking sequence: Indices 42409 -- 42908
CCCAAAGGCTGTGCCGCGGGGCGTAGAACACAGCCTGGAGGAGATATGGCTGTCATATGGTGTTT
AACTGGTCGTTGGTAACACCGTGATTCAGCCACATGTGTTGTATGTCTGAACACTGTTGAACTAC
CGCTTAGCCATACCGTTGAACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCACCCGTGAAC
GCCACAGCCCCGTGAATTGCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTA
CAACGCCTACGACGTGATCCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGAATG
TGTACAATGGACCGACCATCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTG
CCATGCTATGGTCCGCTTTTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAA
TCTCCAGCCTCCTAGCCTCGTTCTATCAACATTTTATGCTCATGC
Right flanking sequence: Indices 42966 -- 43465
ATTCAGCTTTTTCGTTCTACCAACAGCTTCCTATCTTCCTATCAACAGCCTAAGCCTCGTTCTCT
ATCAGCAGTTTATGCTCAAGGTCAGTCTATGCTCATGGTCAGCCTATGCTCATGCCCAGCTATGC
TCATGCCCAGCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTTATGCTCACGCTCAGCTATGC
TCATGGTTAGCTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTCCTTCTACCAACAGC
TTCTCAACAGCGTCCTATCACTATACCAACAGCTTCCTAACAGCTTCTTCAATATACCAACAGCT
TCAACTAACAGCGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTC
TGCTCATGCTTAGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAGCGT
TCTATCAGCTTCACCAGCTATCATCAGCTCTATCAACAGCTTTAG
Found at i:42960 original size:14 final size:14
Alignment explanation
Indices: 42918--42962 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
42908 CCTAGCCTCT
42918 TTCACTCTAGCTTC
1 TTCACTCTAGCTTC
*
42932 TTTCACTCCAGCTTC
1 -TTCACTCTAGCTTC
42947 TTC-CTTCTAGCTTC
1 TTCAC-TCTAGCTTC
42961 TT
1 TT
42963 TCAATTCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
15 13 0.48
ACGTcount: A:0.11, C:0.36, G:0.07, T:0.47
Consensus pattern (14 bp):
TTCACTCTAGCTTC
Left flanking sequence: Indices 42418 -- 42917
TGTGCCGCGGGGCGTAGAACACAGCCTGGAGGAGATATGGCTGTCATATGGTGTTTAACTGGTCG
TTGGTAACACCGTGATTCAGCCACATGTGTTGTATGTCTGAACACTGTTGAACTACCGCTTAGCC
ATACCGTTGAACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCACCCGTGAACGCCACAGCC
CCGTGAATTGCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTACAACGCCTA
CGACGTGATCCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGAATGTGTACAATG
GACCGACCATCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTGCCATGCTAT
GGTCCGCTTTTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAATCTCCAGCC
TCCTAGCCTCGTTCTATCAACATTTTATGCTCATGCCTAGCCTCT
Right flanking sequence: Indices 42963 -- 43462
TCAATTCAGCTTTTTCGTTCTACCAACAGCTTCCTATCTTCCTATCAACAGCCTAAGCCTCGTTC
TCTATCAGCAGTTTATGCTCAAGGTCAGTCTATGCTCATGGTCAGCCTATGCTCATGCCCAGCTA
TGCTCATGCCCAGCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTTATGCTCACGCTCAGCTA
TGCTCATGGTTAGCTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTCCTTCTACCAAC
AGCTTCTCAACAGCGTCCTATCACTATACCAACAGCTTCCTAACAGCTTCTTCAATATACCAACA
GCTTCAACTAACAGCGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGC
TTCTGCTCATGCTTAGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAG
CGTTCTATCAGCTTCACCAGCTATCATCAGCTCTATCAACAGCTT
Found at i:42965 original size:29 final size:29
Alignment explanation
Indices: 42923--42984 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
42913 CCTCTTTCAC
*
42923 TCTAGCTTCTTTCACTCCAGCTTCTTCCT
1 TCTAGCTTCTTTCAATCCAGCTTCTTCCT
* * *
42952 TCTAGCTTCTTTCAATTCAGCTTTTTCGT
1 TCTAGCTTCTTTCAATCCAGCTTCTTCCT
42981 TCTA
1 TCTA
42985 CCAACAGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.13, C:0.31, G:0.08, T:0.48
Consensus pattern (29 bp):
TCTAGCTTCTTTCAATCCAGCTTCTTCCT
Left flanking sequence: Indices 42423 -- 42922
CGCGGGGCGTAGAACACAGCCTGGAGGAGATATGGCTGTCATATGGTGTTTAACTGGTCGTTGGT
AACACCGTGATTCAGCCACATGTGTTGTATGTCTGAACACTGTTGAACTACCGCTTAGCCATACC
GTTGAACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCACCCGTGAACGCCACAGCCCCGTG
AATTGCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTACAACGCCTACGACG
TGATCCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGAATGTGTACAATGGACCG
ACCATCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTGCCATGCTATGGTCC
GCTTTTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAATCTCCAGCCTCCTA
GCCTCGTTCTATCAACATTTTATGCTCATGCCTAGCCTCTTTCAC
Right flanking sequence: Indices 42985 -- 43484
CCAACAGCTTCCTATCTTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTCAA
GGTCAGTCTATGCTCATGGTCAGCCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTATGCTCA
TGCCCAGCTATGCTCATGCCCAGCTTATGCTCACGCTCAGCTATGCTCATGGTTAGCTTATTCTC
ATTTCCAGCGTATGCTCATACTTAGCTTCTTCCTTCTACCAACAGCTTCTCAACAGCGTCCTATC
ACTATACCAACAGCTTCCTAACAGCTTCTTCAATATACCAACAGCTTCAACTAACAGCGTCCTAT
GGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTCTGCTCATGCTTAGCTTCTG
TCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAGCGTTCTATCAGCTTCACCAGCT
ATCATCAGCTCTATCAACAGCTTTAGCTTCGTGCTCTACCAACAG
Found at i:43061 original size:17 final size:17
Alignment explanation
Indices: 43036--43082 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
43026 TCTCTATCAG
*
43036 CAGTTTATGCTCAAGGT
1 CAGTCTATGCTCAAGGT
*
43053 CAGTCTATGCTCATGGT
1 CAGTCTATGCTCAAGGT
*
43070 CAGCCTATGCTCA
1 CAGTCTATGCTCA
43083 TGCCCAGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (17 bp):
CAGTCTATGCTCAAGGT
Left flanking sequence: Indices 42536 -- 43035
TACCGCTTAGCCATACCGTTGAACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCACCCGTG
AACGCCACAGCCCCGTGAATTGCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCT
CTACAACGCCTACGACGTGATCCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGA
ATGTGTACAATGGACCGACCATCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTG
CTGCCATGCTATGGTCCGCTTTTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTG
CAATCTCCAGCCTCCTAGCCTCGTTCTATCAACATTTTATGCTCATGCCTAGCCTCTTTCACTCT
AGCTTCTTTCACTCCAGCTTCTTCCTTCTAGCTTCTTTCAATTCAGCTTTTTCGTTCTACCAACA
GCTTCCTATCTTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAG
Right flanking sequence: Indices 43083 -- 43582
TGCCCAGCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTTATGCTCA
CGCTCAGCTATGCTCATGGTTAGCTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTCC
TTCTACCAACAGCTTCTCAACAGCGTCCTATCACTATACCAACAGCTTCCTAACAGCTTCTTCAA
TATACCAACAGCTTCAACTAACAGCGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTG
AATCAACAGCTTCTGCTCATGCTTAGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATT
CTACCAACAGCGTTCTATCAGCTTCACCAGCTATCATCAGCTCTATCAACAGCTTTAGCTTCGTG
CTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCTTCT
TTATTCTACCAACAGCTTCTTAACAGCGTCTTAACAGCTCTACAA
Found at i:43172 original size:16 final size:16
Alignment explanation
Indices: 43057--43165 Score: 164
Period size: 16 Copynumber: 6.7 Consensus size: 16
43047 CAAGGTCAGT
**
43057 CTATGCTCATGGTCAG
1 CTATGCTCATGCCCAG
43073 CCTATGCTCATGCCCAG
1 -CTATGCTCATGCCCAG
43090 CTATGCTCATGCCCAG
1 CTATGCTCATGCCCAG
43106 CTATGCTCATGCCCAG
1 CTATGCTCATGCCCAG
43122 CTATGCTCATGCCCAG
1 CTATGCTCATGCCCAG
* *
43138 CTTATGCTCACGCTCAG
1 C-TATGCTCATGCCCAG
43155 CTATGCTCATG
1 CTATGCTCATG
43166 GTTAGCTTAT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
16 58 0.67
17 28 0.33
ACGTcount: A:0.18, C:0.35, G:0.19, T:0.28
Consensus pattern (16 bp):
CTATGCTCATGCCCAG
Left flanking sequence: Indices 42557 -- 43056
AACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCACCCGTGAACGCCACAGCCCCGTGAATT
GCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTACAACGCCTACGACGTGAT
CCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGAATGTGTACAATGGACCGACCA
TCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTGCCATGCTATGGTCCGCTT
TTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAATCTCCAGCCTCCTAGCCT
CGTTCTATCAACATTTTATGCTCATGCCTAGCCTCTTTCACTCTAGCTTCTTTCACTCCAGCTTC
TTCCTTCTAGCTTCTTTCAATTCAGCTTTTTCGTTCTACCAACAGCTTCCTATCTTCCTATCAAC
AGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTCAAGGTCAGT
Right flanking sequence: Indices 43166 -- 43665
GTTAGCTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTCCTTCTACCAACAGCTTCTC
AACAGCGTCCTATCACTATACCAACAGCTTCCTAACAGCTTCTTCAATATACCAACAGCTTCAAC
TAACAGCGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTCTGCTC
ATGCTTAGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAGCGTTCTAT
CAGCTTCACCAGCTATCATCAGCTCTATCAACAGCTTTAGCTTCGTGCTCTACCAACAGCTTATG
CTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCTTCTTTATTCTACCAACAGCTT
CTTAACAGCGTCTTAACAGCTCTACAAAGCTTCCTAGCCTCTCTCTCCATCAACACCGTATGCTC
ATGCTTAACTCTTCAGCTTCTTTCATTCAGCTTTCATTCTACCAA
Found at i:43173 original size:33 final size:33
Alignment explanation
Indices: 43057--43198 Score: 169
Period size: 33 Copynumber: 4.3 Consensus size: 33
43047 CAAGGTCAGT
** *
43057 CTATGCTCATGGTCAGCCTATGCTCATGCCCAG
1 CTATGCTCATGCCCAGCTTATGCTCATGCCCAG
43090 CTATGCTCATGCCCAGC-TATGCTCATGCCCAG
1 CTATGCTCATGCCCAGCTTATGCTCATGCCCAG
* *
43122 CTATGCTCATGCCCAGCTTATGCTCACGCTCAG
1 CTATGCTCATGCCCAGCTTATGCTCATGCCCAG
*** * **
43155 CTATGCTCATGGTTAGCTTATTCTCATTTCCAG
1 CTATGCTCATGCCCAGCTTATGCTCATGCCCAG
43188 CGTATGCTCAT
1 C-TATGCTCAT
43199 ACTTAGCTTC
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
32 32 0.34
33 54 0.57
34 9 0.09
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.31
Consensus pattern (33 bp):
CTATGCTCATGCCCAGCTTATGCTCATGCCCAG
Left flanking sequence: Indices 42557 -- 43056
AACTGCCACTTAGCCACCCGCGAATCGCCCCTTAGCCACCCGTGAACGCCACAGCCCCGTGAATT
GCCACAGCCACCCGTAAACCACCCGTTGACCCAGTCTACGGGCTCTACAACGCCTACGACGTGAT
CCAACCTTATGGACCACCTACGGATCCAGGACTTCCAACCAGGAATGTGTACAATGGACCGACCA
TCACGGCCGAGATGCCCGTTCAGCCGTCCAGAGTGGACTGCCTGCTGCCATGCTATGGTCCGCTT
TTGTCCTCCAGCTCTCTCAGCACTACCAGTCACTACCACAGTTGCAATCTCCAGCCTCCTAGCCT
CGTTCTATCAACATTTTATGCTCATGCCTAGCCTCTTTCACTCTAGCTTCTTTCACTCCAGCTTC
TTCCTTCTAGCTTCTTTCAATTCAGCTTTTTCGTTCTACCAACAGCTTCCTATCTTCCTATCAAC
AGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTCAAGGTCAGT
Right flanking sequence: Indices 43199 -- 43698
ACTTAGCTTCTTCCTTCTACCAACAGCTTCTCAACAGCGTCCTATCACTATACCAACAGCTTCCT
AACAGCTTCTTCAATATACCAACAGCTTCAACTAACAGCGTCCTATGGTTCTATCAACAGCTCCT
GGCCTCGGTCTCTGAATCAACAGCTTCTGCTCATGCTTAGCTTCTGTCATTCAGCTTCTTTCCTA
TTCAGCTTCTCATTCTACCAACAGCGTTCTATCAGCTTCACCAGCTATCATCAGCTCTATCAACA
GCTTTAGCTTCGTGCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTT
TCATTTCAGCTTCTTTATTCTACCAACAGCTTCTTAACAGCGTCTTAACAGCTCTACAAAGCTTC
CTAGCCTCTCTCTCCATCAACACCGTATGCTCATGCTTAACTCTTCAGCTTCTTTCATTCAGCTT
TCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTT
Found at i:43285 original size:31 final size:33
Alignment explanation
Indices: 43216--43309 Score: 122
Period size: 33 Copynumber: 2.8 Consensus size: 33
43206 TTCTTCCTTC
*
43216 TACCAACAGCTT-CTCAACAGCGTCCTATCACTA
1 TACCAACAGCTTCCT-AACAGCGTCCTATCAATA
*
43249 TACCAACAGCTTCCTAACAGC-TTCT-TCAATA
1 TACCAACAGCTTCCTAACAGCGTCCTATCAATA
43280 TACCAACAGCTTCAACTAACAGCGTCCTAT
1 TACCAACAGCTTC--CTAACAGCGTCCTAT
43310 GGTTCTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
31 18 0.34
32 3 0.06
33 26 0.49
34 5 0.09
35 1 0.02
ACGTcount: A:0.32, C:0.34, G:0.09, T:0.26
Consensus pattern (33 bp):
TACCAACAGCTTCCTAACAGCGTCCTATCAATA
Left flanking sequence: Indices 42716 -- 43215
GACTTCCAACCAGGAATGTGTACAATGGACCGACCATCACGGCCGAGATGCCCGTTCAGCCGTCC
AGAGTGGACTGCCTGCTGCCATGCTATGGTCCGCTTTTGTCCTCCAGCTCTCTCAGCACTACCAG
TCACTACCACAGTTGCAATCTCCAGCCTCCTAGCCTCGTTCTATCAACATTTTATGCTCATGCCT
AGCCTCTTTCACTCTAGCTTCTTTCACTCCAGCTTCTTCCTTCTAGCTTCTTTCAATTCAGCTTT
TTCGTTCTACCAACAGCTTCCTATCTTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTT
TATGCTCAAGGTCAGTCTATGCTCATGGTCAGCCTATGCTCATGCCCAGCTATGCTCATGCCCAG
CTATGCTCATGCCCAGCTATGCTCATGCCCAGCTTATGCTCACGCTCAGCTATGCTCATGGTTAG
CTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTCCTTC
Right flanking sequence: Indices 43310 -- 43809
GGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTCTGCTCATGCTTAGCTTCTG
TCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAGCGTTCTATCAGCTTCACCAGCT
ATCATCAGCTCTATCAACAGCTTTAGCTTCGTGCTCTACCAACAGCTTATGCTCATGCTTGGTGT
CTGTCAATCTCAGCTTCTTTCATTTCAGCTTCTTTATTCTACCAACAGCTTCTTAACAGCGTCTT
AACAGCTCTACAAAGCTTCCTAGCCTCTCTCTCCATCAACACCGTATGCTCATGCTTAACTCTTC
AGCTTCTTTCATTCAGCTTTCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTTT
AGCTTCTATCAATATCACCTTTTTTCATTCTACCAGCAGCGTCCTATCAGCTTCCTATCCTCTAC
CAACAGCTCCTATCGCTTTTTCAATCTACCAACAGCTCAGCAACT
Found at i:43386 original size:14 final size:16
Alignment explanation
Indices: 43367--43403 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
43357 GCTCATGCTT
43367 AGCTTCTGT-C-ATTC
1 AGCTTCTGTCCTATTC
*
43381 AGCTTCTTTCCTATTC
1 AGCTTCTGTCCTATTC
43397 AGCTTCT
1 AGCTTCT
43404 CATTCTACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 11 0.55
ACGTcount: A:0.14, C:0.30, G:0.11, T:0.46
Consensus pattern (16 bp):
AGCTTCTGTCCTATTC
Left flanking sequence: Indices 42867 -- 43366
CCAGCCTCCTAGCCTCGTTCTATCAACATTTTATGCTCATGCCTAGCCTCTTTCACTCTAGCTTC
TTTCACTCCAGCTTCTTCCTTCTAGCTTCTTTCAATTCAGCTTTTTCGTTCTACCAACAGCTTCC
TATCTTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTCAAGGTCAGTCTATG
CTCATGGTCAGCCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTATGCTCATGCCCAGCTATG
CTCATGCCCAGCTTATGCTCACGCTCAGCTATGCTCATGGTTAGCTTATTCTCATTTCCAGCGTA
TGCTCATACTTAGCTTCTTCCTTCTACCAACAGCTTCTCAACAGCGTCCTATCACTATACCAACA
GCTTCCTAACAGCTTCTTCAATATACCAACAGCTTCAACTAACAGCGTCCTATGGTTCTATCAAC
AGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTCTGCTCATGCTT
Right flanking sequence: Indices 43404 -- 43903
CATTCTACCAACAGCGTTCTATCAGCTTCACCAGCTATCATCAGCTCTATCAACAGCTTTAGCTT
CGTGCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGC
TTCTTTATTCTACCAACAGCTTCTTAACAGCGTCTTAACAGCTCTACAAAGCTTCCTAGCCTCTC
TCTCCATCAACACCGTATGCTCATGCTTAACTCTTCAGCTTCTTTCATTCAGCTTTCATTCTACC
AACAGCTTATGCTCATACTCAGCTTCTTTCACTTTTAGCTTCTATCAATATCACCTTTTTTCATT
CTACCAGCAGCGTCCTATCAGCTTCCTATCCTCTACCAACAGCTCCTATCGCTTTTTCAATCTAC
CAACAGCTCAGCAACTACCAGCAGCAACTACCAGCAGCACTACCAGCAGCTTCTACCAACAGCAC
TACCAACAGCACTACCAACAGCACTACCAACAGCACTACCAACAG
Found at i:43795 original size:29 final size:30
Alignment explanation
Indices: 43720--43802 Score: 89
Period size: 29 Copynumber: 2.7 Consensus size: 30
43710 AATATCACCT
* *
43720 TTTTTCATTCTACCAGCAGCGTCCTATCAGC
1 TTTTTCAATCTACCAACAGC-TCCTATCAGC
* *
43751 TTCCTATC-CTCTACCAACAGCTCCTATC-GC
1 TT--TTTCAATCTACCAACAGCTCCTATCAGC
43781 TTTTTCAATCTACCAACAGCTC
1 TTTTTCAATCTACCAACAGCTC
43803 AGCAACTACC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
28 3 0.07
29 14 0.32
30 4 0.09
31 9 0.20
32 11 0.25
33 3 0.07
ACGTcount: A:0.22, C:0.36, G:0.08, T:0.34
Consensus pattern (30 bp):
TTTTTCAATCTACCAACAGCTCCTATCAGC
Left flanking sequence: Indices 43220 -- 43719
AACAGCTTCTCAACAGCGTCCTATCACTATACCAACAGCTTCCTAACAGCTTCTTCAATATACCA
ACAGCTTCAACTAACAGCGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAAC
AGCTTCTGCTCATGCTTAGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAA
CAGCGTTCTATCAGCTTCACCAGCTATCATCAGCTCTATCAACAGCTTTAGCTTCGTGCTCTACC
AACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCTTCTTTATTCT
ACCAACAGCTTCTTAACAGCGTCTTAACAGCTCTACAAAGCTTCCTAGCCTCTCTCTCCATCAAC
ACCGTATGCTCATGCTTAACTCTTCAGCTTCTTTCATTCAGCTTTCATTCTACCAACAGCTTATG
CTCATACTCAGCTTCTTTCACTTTTAGCTTCTATCAATATCACCT
Right flanking sequence: Indices 43803 -- 44302
AGCAACTACCAGCAGCAACTACCAGCAGCACTACCAGCAGCTTCTACCAACAGCACTACCAACAG
CACTACCAACAGCACTACCAACAGCACTACCAACAGCTTCTACCAACAGCACTATCAACAGCTTC
TACCAACAGCACTACCAACAGCTTCTACCAACAGCACTATCAACAGCTTCTACCAGCTTCTCACC
TCCTACCAACAGCTTCTACCAACAGCTCAGCACTACCAACAGCTTCTTAACAGCTATAACATCGT
CTCAGCGTCCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCACAGCGTCTCCGCAGGCTC
CCCCGCGCCCGCCTCGGCCGCAGGCGTCTCCTCCATCTTGTCCTCGGCTGGCGTCTCCATGGGCG
TCTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGTCTCCATGGGCGTCTCCTCCATCTCGCCC
ATCTCCGCCACCGGAGTGCCCGCCACGGGCGTGCCCCGCATCAGC
Found at i:43836 original size:25 final size:25
Alignment explanation
Indices: 43802--43987 Score: 234
Period size: 25 Copynumber: 7.5 Consensus size: 25
43792 ACCAACAGCT
* * *
43802 CAGCAACTACCAGCAGCAACTACCAG
1 CAGCTACTACCAACAGC-ACTACCAA
* *
43828 CAGC-ACTACCAGCAGCTTCTACCAA
1 CAGCTACTACCAACAGC-ACTACCAA
43853 CAGC-ACTACCAACAGCACTACCAA
1 CAGCTACTACCAACAGCACTACCAA
43877 CAGC-ACTACCAACAGCACTACCAA
1 CAGCTACTACCAACAGCACTACCAA
* *
43901 CAGCTTCTACCAACAGCACTATCAA
1 CAGCTACTACCAACAGCACTACCAA
*
43926 CAGCTTCTACCAACAGCACTACCAA
1 CAGCTACTACCAACAGCACTACCAA
* *
43951 CAGCTTCTACCAACAGCACTATCAA
1 CAGCTACTACCAACAGCACTACCAA
*
43976 CAGCTTCTACCA
1 CAGCTACTACCA
43988 GCTTCTCACC
Statistics
Matches: 150, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
24 35 0.23
25 111 0.74
26 4 0.03
ACGTcount: A:0.37, C:0.39, G:0.10, T:0.15
Consensus pattern (25 bp):
CAGCTACTACCAACAGCACTACCAA
Left flanking sequence: Indices 43302 -- 43801
CGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTCTGCTCATGCTT
AGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAGCGTTCTATCAGCTT
CACCAGCTATCATCAGCTCTATCAACAGCTTTAGCTTCGTGCTCTACCAACAGCTTATGCTCATG
CTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCTTCTTTATTCTACCAACAGCTTCTTAAC
AGCGTCTTAACAGCTCTACAAAGCTTCCTAGCCTCTCTCTCCATCAACACCGTATGCTCATGCTT
AACTCTTCAGCTTCTTTCATTCAGCTTTCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTT
TCACTTTTAGCTTCTATCAATATCACCTTTTTTCATTCTACCAGCAGCGTCCTATCAGCTTCCTA
TCCTCTACCAACAGCTCCTATCGCTTTTTCAATCTACCAACAGCT
Right flanking sequence: Indices 43988 -- 44487
GCTTCTCACCTCCTACCAACAGCTTCTACCAACAGCTCAGCACTACCAACAGCTTCTTAACAGCT
ATAACATCGTCTCAGCGTCCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCACAGCGTCT
CCGCAGGCTCCCCCGCGCCCGCCTCGGCCGCAGGCGTCTCCTCCATCTTGTCCTCGGCTGGCGTC
TCCATGGGCGTCTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGTCTCCATGGGCGTCTCCTC
CATCTCGCCCATCTCCGCCACCGGAGTGCCCGCCACGGGCGTGCCCCGCATCAGCGCGTCCACGT
CGCCGCGGCTGGCGTACAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTCCAAGTTCGCA
ATGGCCGTCGCGGCAAACTCGCCCACCTCAAACTGCACCACCGCACACCCCAGCGGCCGCCCGTC
GCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTC
Found at i:43837 original size:12 final size:12
Alignment explanation
Indices: 43802--43979 Score: 221
Period size: 12 Copynumber: 14.3 Consensus size: 12
43792 ACCAACAGCT
*
43802 CAGCAACTACCAG
1 CAGC-ACTACCAA
*
43815 CAGCAACTACCAG
1 CAGC-ACTACCAA
*
43828 CAGCACTACCAG
1 CAGCACTACCAA
*
43840 CAGCTTCTACCAA
1 CAGC-ACTACCAA
43853 CAGCACTACCAA
1 CAGCACTACCAA
43865 CAGCACTACCAA
1 CAGCACTACCAA
43877 CAGCACTACCAA
1 CAGCACTACCAA
43889 CAGCACTACCAA
1 CAGCACTACCAA
*
43901 CAGCTTCTACCAA
1 CAGC-ACTACCAA
*
43914 CAGCACTATCAA
1 CAGCACTACCAA
*
43926 CAGCTTCTACCAA
1 CAGC-ACTACCAA
43939 CAGCACTACCAA
1 CAGCACTACCAA
*
43951 CAGCTTCTACCAA
1 CAGC-ACTACCAA
*
43964 CAGCACTATCAA
1 CAGCACTACCAA
43976 CAGC
1 CAGC
43980 TTCTACCAGC
Statistics
Matches: 149, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
12 90 0.60
13 59 0.40
ACGTcount: A:0.37, C:0.39, G:0.10, T:0.13
Consensus pattern (12 bp):
CAGCACTACCAA
Left flanking sequence: Indices 43302 -- 43801
CGTCCTATGGTTCTATCAACAGCTCCTGGCCTCGGTCTCTGAATCAACAGCTTCTGCTCATGCTT
AGCTTCTGTCATTCAGCTTCTTTCCTATTCAGCTTCTCATTCTACCAACAGCGTTCTATCAGCTT
CACCAGCTATCATCAGCTCTATCAACAGCTTTAGCTTCGTGCTCTACCAACAGCTTATGCTCATG
CTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCTTCTTTATTCTACCAACAGCTTCTTAAC
AGCGTCTTAACAGCTCTACAAAGCTTCCTAGCCTCTCTCTCCATCAACACCGTATGCTCATGCTT
AACTCTTCAGCTTCTTTCATTCAGCTTTCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTT
TCACTTTTAGCTTCTATCAATATCACCTTTTTTCATTCTACCAGCAGCGTCCTATCAGCTTCCTA
TCCTCTACCAACAGCTCCTATCGCTTTTTCAATCTACCAACAGCT
Right flanking sequence: Indices 43980 -- 44479
TTCTACCAGCTTCTCACCTCCTACCAACAGCTTCTACCAACAGCTCAGCACTACCAACAGCTTCT
TAACAGCTATAACATCGTCTCAGCGTCCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCA
CAGCGTCTCCGCAGGCTCCCCCGCGCCCGCCTCGGCCGCAGGCGTCTCCTCCATCTTGTCCTCGG
CTGGCGTCTCCATGGGCGTCTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGTCTCCATGGGC
GTCTCCTCCATCTCGCCCATCTCCGCCACCGGAGTGCCCGCCACGGGCGTGCCCCGCATCAGCGC
GTCCACGTCGCCGCGGCTGGCGTACAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTCCA
AGTTCGCAATGGCCGTCGCGGCAAACTCGCCCACCTCAAACTGCACCACCGCACACCCCAGCGGC
CGCCCGTCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCC
Found at i:44011 original size:31 final size:30
Alignment explanation
Indices: 43892--44044 Score: 129
Period size: 25 Copynumber: 5.6 Consensus size: 30
43882 CTACCAACAG
43892 CACTACCAACAGCTTCTACCAACAG-----
1 CACTACCAACAGCTTCTACCAACAGCTCAC
*
43917 CACTATCAACAGCTTCTACCAACAG-----
1 CACTACCAACAGCTTCTACCAACAGCTCAC
43942 CACTACCAACAGCTTCTACCAACAG-----
1 CACTACCAACAGCTTCTACCAACAGCTCAC
* * **
43967 CACTATCAACAGCTTCTACCAGCTTCTCAC
1 CACTACCAACAGCTTCTACCAACAGCTCAC
* *
43997 CTCCTACCAACAGCTTCTACCAACAGCTCAG
1 C-ACTACCAACAGCTTCTACCAACAGCTCAC
44028 CACTACCAACAGCTTCT
1 CACTACCAACAGCTTCT
44045 TAACAGCTAT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
25 69 0.63
30 16 0.15
31 24 0.22
ACGTcount: A:0.32, C:0.40, G:0.08, T:0.20
Consensus pattern (30 bp):
CACTACCAACAGCTTCTACCAACAGCTCAC
Left flanking sequence: Indices 43392 -- 43891
TATTCAGCTTCTCATTCTACCAACAGCGTTCTATCAGCTTCACCAGCTATCATCAGCTCTATCAA
CAGCTTTAGCTTCGTGCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTC
TTTCATTTCAGCTTCTTTATTCTACCAACAGCTTCTTAACAGCGTCTTAACAGCTCTACAAAGCT
TCCTAGCCTCTCTCTCCATCAACACCGTATGCTCATGCTTAACTCTTCAGCTTCTTTCATTCAGC
TTTCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTTTAGCTTCTATCAATATCA
CCTTTTTTCATTCTACCAGCAGCGTCCTATCAGCTTCCTATCCTCTACCAACAGCTCCTATCGCT
TTTTCAATCTACCAACAGCTCAGCAACTACCAGCAGCAACTACCAGCAGCACTACCAGCAGCTTC
TACCAACAGCACTACCAACAGCACTACCAACAGCACTACCAACAG
Right flanking sequence: Indices 44045 -- 44544
TAACAGCTATAACATCGTCTCAGCGTCCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCA
CAGCGTCTCCGCAGGCTCCCCCGCGCCCGCCTCGGCCGCAGGCGTCTCCTCCATCTTGTCCTCGG
CTGGCGTCTCCATGGGCGTCTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGTCTCCATGGGC
GTCTCCTCCATCTCGCCCATCTCCGCCACCGGAGTGCCCGCCACGGGCGTGCCCCGCATCAGCGC
GTCCACGTCGCCGCGGCTGGCGTACAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTCCA
AGTTCGCAATGGCCGTCGCGGCAAACTCGCCCACCTCAAACTGCACCACCGCACACCCCAGCGGC
CGCCCGTCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTCGAACAAGTCAAA
CAAGTCCTCCTGCGACGTGACAAACGGCATGTTGGCCACGTACAC
Found at i:44202 original size:36 final size:36
Alignment explanation
Indices: 44158--44235 Score: 147
Period size: 36 Copynumber: 2.2 Consensus size: 36
44148 CAGGCGTCTC
*
44158 CTCCATCTTGTCCTCGGCTGGCGTCTCCATGGGCGT
1 CTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGT
44194 CTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGT
1 CTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGT
44230 CTCCAT
1 CTCCAT
44236 GGGCGTCTCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.06, C:0.38, G:0.26, T:0.29
Consensus pattern (36 bp):
CTCCATCTTGTCCTCGGCCGGCGTCTCCATGGGCGT
Left flanking sequence: Indices 43658 -- 44157
TCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTTTAGCTTCTATCAATATCACCTTTT
TTCATTCTACCAGCAGCGTCCTATCAGCTTCCTATCCTCTACCAACAGCTCCTATCGCTTTTTCA
ATCTACCAACAGCTCAGCAACTACCAGCAGCAACTACCAGCAGCACTACCAGCAGCTTCTACCAA
CAGCACTACCAACAGCACTACCAACAGCACTACCAACAGCACTACCAACAGCTTCTACCAACAGC
ACTATCAACAGCTTCTACCAACAGCACTACCAACAGCTTCTACCAACAGCACTATCAACAGCTTC
TACCAGCTTCTCACCTCCTACCAACAGCTTCTACCAACAGCTCAGCACTACCAACAGCTTCTTAA
CAGCTATAACATCGTCTCAGCGTCCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCACAG
CGTCTCCGCAGGCTCCCCCGCGCCCGCCTCGGCCGCAGGCGTCTC
Right flanking sequence: Indices 44236 -- 44735
GGGCGTCTCCTCCATCTCGCCCATCTCCGCCACCGGAGTGCCCGCCACGGGCGTGCCCCGCATCA
GCGCGTCCACGTCGCCGCGGCTGGCGTACAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCG
TCCAAGTTCGCAATGGCCGTCGCGGCAAACTCGCCCACCTCAAACTGCACCACCGCACACCCCAG
CGGCCGCCCGTCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTCGAACAAGT
CAAACAAGTCCTCCTGCGACGTGACAAACGGCATGTTGGCCACGTACACGGTGTCGGACGCAGGC
CCACCGCCCACCACCCCGGCCGTGAACTCGGAGTTGGCCACGGGCGCAGGCCGCTCGCGCTGCCG
CTCCCCGCGCTCCTGCCGCTCGGGCCGCTCGCGCTCGCTGCGGTCGCCGCGCCCGGGCCGGAGAT
CCAACCGCCGGCCCGCGATCTCGTACCCCTGAAACATGTCAAGAG
Found at i:44250 original size:15 final size:12
Alignment explanation
Indices: 44213--44245 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
44203 GTCCTCGGCC
44213 GGCGTCTCCATG
1 GGCGTCTCCATG
44225 GGCGTCTCCATG
1 GGCGTCTCCATG
44237 GGCGTCTCC
1 GGCGTCTCC
44246 TCCATCTCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.36, G:0.33, T:0.24
Consensus pattern (12 bp):
GGCGTCTCCATG
Left flanking sequence: Indices 43713 -- 44212
ATCACCTTTTTTCATTCTACCAGCAGCGTCCTATCAGCTTCCTATCCTCTACCAACAGCTCCTAT
CGCTTTTTCAATCTACCAACAGCTCAGCAACTACCAGCAGCAACTACCAGCAGCACTACCAGCAG
CTTCTACCAACAGCACTACCAACAGCACTACCAACAGCACTACCAACAGCACTACCAACAGCTTC
TACCAACAGCACTATCAACAGCTTCTACCAACAGCACTACCAACAGCTTCTACCAACAGCACTAT
CAACAGCTTCTACCAGCTTCTCACCTCCTACCAACAGCTTCTACCAACAGCTCAGCACTACCAAC
AGCTTCTTAACAGCTATAACATCGTCTCAGCGTCCATCAACACAGCTCTTATTCGTCTATGTGTC
TATTTCACAGCGTCTCCGCAGGCTCCCCCGCGCCCGCCTCGGCCGCAGGCGTCTCCTCCATCTTG
TCCTCGGCTGGCGTCTCCATGGGCGTCTCCATCTTGTCCTCGGCC
Right flanking sequence: Indices 44246 -- 44745
TCCATCTCGCCCATCTCCGCCACCGGAGTGCCCGCCACGGGCGTGCCCCGCATCAGCGCGTCCAC
GTCGCCGCGGCTGGCGTACAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTCCAAGTTCG
CAATGGCCGTCGCGGCAAACTCGCCCACCTCAAACTGCACCACCGCACACCCCAGCGGCCGCCCG
TCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTCGAACAAGTCAAACAAGTC
CTCCTGCGACGTGACAAACGGCATGTTGGCCACGTACACGGTGTCGGACGCAGGCCCACCGCCCA
CCACCCCGGCCGTGAACTCGGAGTTGGCCACGGGCGCAGGCCGCTCGCGCTGCCGCTCCCCGCGC
TCCTGCCGCTCGGGCCGCTCGCGCTCGCTGCGGTCGCCGCGCCCGGGCCGGAGATCCAACCGCCG
GCCCGCGATCTCGTACCCCTGAAACATGTCAAGAGCCCGGGCCGC
Found at i:45419 original size:12 final size:12
Alignment explanation
Indices: 45402--45434 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
45392 CGGTCGTAGC
45402 CCAGACGGTGGT
1 CCAGACGGTGGT
45414 CCAGACGGTGGT
1 CCAGACGGTGGT
45426 CCAGACGGT
1 CCAGACGGT
45435 CGCGGTCGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.15
Consensus pattern (12 bp):
CCAGACGGTGGT
Left flanking sequence: Indices 44902 -- 45401
GGTGGTGAGCGGCCCAAACGTCTCGGGGTTGGGCGGCTGGCGCTCGCGCTGGCGGTCCCGCGGCA
CCCGCTCGCGCCGCTCGTCACGCCGCCGGGGCTCCGCCGGAGGCTGGTCCTGCCGCACAAAAATC
TCGCGGCCCCGCATCTGCTGGTGGTTGAACATGTCGATGGCGCGGTCGACGTCATCGCGCAGGCG
GAACTCGACGGTGGCCATCCCGCGCGACCGCCCGCGGTTGGTGACGATGTCGGCCCGCACCACCT
CGAAGCCGGCGCCGGCGTCGTCAAACATCCGCTGCACGTCGAACGCCAGCAGGTCGTACGGCAAG
TTGCCGATGAAGATCAGGTTGTCGAAGTTGCGCTCCAGCTTGTTGCGGGTGTCGTCGTCGTCCAT
GGTGGAGAACGCCGGCGGCGGCGGCCCCTGGCGGCTGCGCAGGTTGAAGTCGCGCCCGCGGAAGG
TGCGTTCCTGGCGGTCGTAGCCCAGCCCGCGGTCGCGGTCGTAGC
Right flanking sequence: Indices 45435 -- 45934
CGCGGTCGTAACGGTCCAGGCCACGGTCCAGGCCATAACGGTCCTGGCGGTCGTAGCCGTCGCGG
CTGCCACGGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGTTCCCGCGGCGGGCGCGGCCGTCGTA
GCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGCGTCGCGGCGGGGCAGCCGGTCGCGCT
GGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCGTGGGGGCTCCGGCAGCGGGCGGGTG
GCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCATGTCCATGGTTGTCGACGTTGATGGGTTGCG
CGCGCGGTGAAAAATGAAGTAGCGTAGGGGAAGCGAGGGGAAGGCATGGAAGGCATAGAGAAGGC
ATAGAGAAGGCATAGAGAAGACATAGAGAAGACATAGAGGATGGGTGGGGAGGGGACGAGTGGTG
GGTGTGGTAGTGTGGTGACTTGTGGGTGGTCGAGTGGTTGGACTG
Found at i:45462 original size:12 final size:12
Alignment explanation
Indices: 45445--45469 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45435 CGCGGTCGTA
45445 ACGGTCCAGGCC
1 ACGGTCCAGGCC
45457 ACGGTCCAGGCC
1 ACGGTCCAGGCC
45469 A
1 A
45470 TAACGGTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.40, G:0.32, T:0.08
Consensus pattern (12 bp):
ACGGTCCAGGCC
Left flanking sequence: Indices 44945 -- 45444
TCGCGCTGGCGGTCCCGCGGCACCCGCTCGCGCCGCTCGTCACGCCGCCGGGGCTCCGCCGGAGG
CTGGTCCTGCCGCACAAAAATCTCGCGGCCCCGCATCTGCTGGTGGTTGAACATGTCGATGGCGC
GGTCGACGTCATCGCGCAGGCGGAACTCGACGGTGGCCATCCCGCGCGACCGCCCGCGGTTGGTG
ACGATGTCGGCCCGCACCACCTCGAAGCCGGCGCCGGCGTCGTCAAACATCCGCTGCACGTCGAA
CGCCAGCAGGTCGTACGGCAAGTTGCCGATGAAGATCAGGTTGTCGAAGTTGCGCTCCAGCTTGT
TGCGGGTGTCGTCGTCGTCCATGGTGGAGAACGCCGGCGGCGGCGGCCCCTGGCGGCTGCGCAGG
TTGAAGTCGCGCCCGCGGAAGGTGCGTTCCTGGCGGTCGTAGCCCAGCCCGCGGTCGCGGTCGTA
GCCCAGACGGTGGTCCAGACGGTGGTCCAGACGGTCGCGGTCGTA
Right flanking sequence: Indices 45470 -- 45969
TAACGGTCCTGGCGGTCGTAGCCGTCGCGGCTGCCACGGTTGTCGCGGCCTCCGCGCCCGCGGCG
GTCGTTCCCGCGGCGGGCGCGGCCGTCGTAGCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCGC
GGGCGTCGCGGCGGGGCAGCCGGTCGCGCTGGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACGG
GCGCGTGGGGGCTCCGGCAGCGGGCGGGTGGCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCAT
GTCCATGGTTGTCGACGTTGATGGGTTGCGCGCGCGGTGAAAAATGAAGTAGCGTAGGGGAAGCG
AGGGGAAGGCATGGAAGGCATAGAGAAGGCATAGAGAAGGCATAGAGAAGACATAGAGAAGACAT
AGAGGATGGGTGGGGAGGGGACGAGTGGTGGGTGTGGTAGTGTGGTGACTTGTGGGTGGTCGAGT
GGTTGGACTGGTTTATATGGTTTGGGCCTTTTCAGTAGTGTTTTT
Found at i:45824 original size:11 final size:11
Alignment explanation
Indices: 45799--45863 Score: 98
Period size: 11 Copynumber: 6.1 Consensus size: 11
45789 GAAGCGAGGG
45799 GAAGGCAT-G-
1 GAAGGCATAGA
45808 GAAGGCATAGA
1 GAAGGCATAGA
45819 GAAGGCATAGA
1 GAAGGCATAGA
45830 GAAGGCATAGA
1 GAAGGCATAGA
*
45841 GAAGACATAGA
1 GAAGGCATAGA
*
45852 GAAGACATAGA
1 GAAGGCATAGA
45863 G
1 G
45864 GATGGGTGGG
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
9 8 0.15
10 1 0.02
11 44 0.83
ACGTcount: A:0.46, C:0.09, G:0.35, T:0.09
Consensus pattern (11 bp):
GAAGGCATAGA
Left flanking sequence: Indices 45299 -- 45798
AACGCCGGCGGCGGCGGCCCCTGGCGGCTGCGCAGGTTGAAGTCGCGCCCGCGGAAGGTGCGTTC
CTGGCGGTCGTAGCCCAGCCCGCGGTCGCGGTCGTAGCCCAGACGGTGGTCCAGACGGTGGTCCA
GACGGTCGCGGTCGTAACGGTCCAGGCCACGGTCCAGGCCATAACGGTCCTGGCGGTCGTAGCCG
TCGCGGCTGCCACGGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGTTCCCGCGGCGGGCGCGGCC
GTCGTAGCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGCGTCGCGGCGGGGCAGCCGGT
CGCGCTGGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCGTGGGGGCTCCGGCAGCGGG
CGGGTGGCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCATGTCCATGGTTGTCGACGTTGATGG
GTTGCGCGCGCGGTGAAAAATGAAGTAGCGTAGGGGAAGCGAGGG
Right flanking sequence: Indices 45864 -- 46363
GATGGGTGGGGAGGGGACGAGTGGTGGGTGTGGTAGTGTGGTGACTTGTGGGTGGTCGAGTGGTT
GGACTGGTTTATATGGTTTGGGCCTTTTCAGTAGTGTTTTTTGATAGGTAGGGACAATGGGGTTA
GGAGCAAGACAGTTGGGAGCTACGGTGGTAGAGAGAAGGAGGTAGTAGTGGGAGCAACGGTGGGA
GAGCGAAGGAGATAGCAGGGGGAGCAACGGTGGGAGAGAGAAGGTGATAGACGTGGGGAAGCAGG
GAGAATGACGGTGGCGAGGCGAACTGGGAAGTTGGGTGGTGTAGATGTGTAGAGCCAGCGAGATA
CCGGGTGTAGGCATCACGAGAGACAGCATTGAGACGCCATGTTTACCGGCGGGATTGGTGGGACA
GACTGGGTAGACCGGCGAGAAACCTAGATACGAGGAATCAACGAACACTGATTTAACGTGATTTG
ACGTGAATGTTTGACATGAATGTCTGACGACGAATTAGATAAGAA
Found at i:46046 original size:35 final size:35
Alignment explanation
Indices: 46007--46108 Score: 141
Period size: 35 Copynumber: 2.9 Consensus size: 35
45997 GCAAGACAGT
* * * *
46007 TGGGAGCTACGGTGGTAGAGAGAAGGAGGTAGTAG
1 TGGGAGCAACGGTGGGAGAGAGAAGGAGATAGCAG
*
46042 TGGGAGCAACGGTGGGAGAGCGAAGGAGATAGCAG
1 TGGGAGCAACGGTGGGAGAGAGAAGGAGATAGCAG
* *
46077 GGGGAGCAACGGTGGGAGAGAGAAGGTGATAG
1 TGGGAGCAACGGTGGGAGAGAGAAGGAGATAG
46109 ACGTGGGGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 59 1.00
ACGTcount: A:0.30, C:0.08, G:0.50, T:0.12
Consensus pattern (35 bp):
TGGGAGCAACGGTGGGAGAGAGAAGGAGATAGCAG
Left flanking sequence: Indices 45507 -- 46006
GGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGTTCCCGCGGCGGGCGCGGCCGTCGTAGCGGTCG
CGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGCGTCGCGGCGGGGCAGCCGGTCGCGCTGGGGCGA
TCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCGTGGGGGCTCCGGCAGCGGGCGGGTGGCGCTAC
TTACTCTCGAGTAGTCGTCTAGGTCCATGTCCATGGTTGTCGACGTTGATGGGTTGCGCGCGCGG
TGAAAAATGAAGTAGCGTAGGGGAAGCGAGGGGAAGGCATGGAAGGCATAGAGAAGGCATAGAGA
AGGCATAGAGAAGACATAGAGAAGACATAGAGGATGGGTGGGGAGGGGACGAGTGGTGGGTGTGG
TAGTGTGGTGACTTGTGGGTGGTCGAGTGGTTGGACTGGTTTATATGGTTTGGGCCTTTTCAGTA
GTGTTTTTTGATAGGTAGGGACAATGGGGTTAGGAGCAAGACAGT
Right flanking sequence: Indices 46109 -- 46608
ACGTGGGGAAGCAGGGAGAATGACGGTGGCGAGGCGAACTGGGAAGTTGGGTGGTGTAGATGTGT
AGAGCCAGCGAGATACCGGGTGTAGGCATCACGAGAGACAGCATTGAGACGCCATGTTTACCGGC
GGGATTGGTGGGACAGACTGGGTAGACCGGCGAGAAACCTAGATACGAGGAATCAACGAACACTG
ATTTAACGTGATTTGACGTGAATGTTTGACATGAATGTCTGACGACGAATTAGATAAGAATGCGG
TGAGTATCCTGTAAACCTCGCAAGGGAGGCAACATTGACTTGTACTGATCAGACGTTTGTCAGAG
GCAATACTTGCGAGATTGCTCAATAGTGATCCACCGCTAGACACCCAGTGAGAGTGATGTAGGTA
AGACGTGACGTGTTAGTTCACGCACTTGTATCAGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACC
CCCCAACGCTTATTTGCGTCAATTGGCTGCTACAATTCTATTCCG
Found at i:47353 original size:8 final size:8
Alignment explanation
Indices: 47342--47401 Score: 93
Period size: 8 Copynumber: 7.5 Consensus size: 8
47332 TATACTGGCG
47342 GTCTGGTA
1 GTCTGGTA
47350 GTCTGGTA
1 GTCTGGTA
47358 GTCTGGTA
1 GTCTGGTA
*
47366 GTCCGGTA
1 GTCTGGTA
*
47374 GTCTGGTC
1 GTCTGGTA
47382 GTCTGGTA
1 GTCTGGTA
*
47390 GTTTGGTA
1 GTCTGGTA
47398 GTCT
1 GTCT
47402 TTAACCTTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 46 1.00
ACGTcount: A:0.10, C:0.15, G:0.37, T:0.38
Consensus pattern (8 bp):
GTCTGGTA
Left flanking sequence: Indices 46842 -- 47341
ATCATTACACTTTGTTATTCCCGACTATTGAGACTCCCAGCTAATTCCATAACCGTATATCGTAC
CCGTCGATCTGTGTAACCATGGCGAAGAACGACGACAAATTCACCAACGGAACCTTTGGCCCCAA
TTTGACCCCGAAGCCGGGTCGCAACGAAAAGGTATACTAGTGACGTAGGATTCTGTAAGCTGGAA
CCTGGCAAGCTGGAACCAGGTAATAGTTGTGACCTCATAACTCGGCCTTGACGAGAACAGGTCGG
CCAAACCGGTAAACCAATAGATCACCTGTCACTGGTGAAATAGCCACCAGGTAATCTGGTAGCCT
GCGTATTGAATATGAGTTTGAAGAATACAATTTTGATGATTTTTACTAAGTTATTTAATTTAAAA
AAACGAACATAGTAATTGTTTATGTTTTGTTCAACCATGTCCATTGAGAATGGTAGCGAGTAATC
TGGTATTCTGGTGATCCGGTAATCTTTTAATTTCGTATACTGGCG
Right flanking sequence: Indices 47402 -- 47901
TTAACCTTGTATACTGGCAGCTTCCTAGCCTTGTAGTCTGTGATAGCCTCGACTTCTACCCCCAG
TCCTACGTCTACCTCATAAATCATTCTATTGCTAGTTCTATCACTTCTCGGGCATCGGCAACACA
TGCCGCCGGTCCACCTCCGTCTCCTTGTTCACCTCCTCCTCGCCGTCAAACTTGAGCCGCACCTG
GTCCTTCCGGTGCCCCACCACCGTCAGCGTGTAGAACGTGGTGGTTTCCGGGTACCGGGCCAACA
CCCTCGTCCCGTAGGGATACGGCTGCAACAGCTTGGCCTCGCTGGGCACCGGAATGAGCAAGATC
TCCTTGTAGCTCGCCTTGAACGTCTGCCCCGGGTTGTTGTTCTCGTCGGGCTCGGGGTCCCGGAT
CTCAAACTTCGTCCCGTCCGCCGTCACCTTCATCACCTCGCACTGGATCCACTCCTCCATGTGGC
GGTTGCGCAACCGGAACGCCACCTCCAGCCCCACCACGATGGGCT
Found at i:48566 original size:14 final size:13
Alignment explanation
Indices: 48547--48611 Score: 58
Period size: 14 Copynumber: 4.8 Consensus size: 13
48537 GATAGGCCTT
*
48547 GGTAGTGGGGACTG
1 GGTAGTGAGG-CTG
48561 GGTAGTGAGGCTG
1 GGTAGTGAGGCTG
*
48574 GGGAGTGAGGCTG
1 GGTAGTGAGGCTG
* *
48587 TGGTAGCGAGACTG
1 -GGTAGTGAGGCTG
*
48601 TGGGAGTGAGG
1 -GGTAGTGAGG
48612 GCAGGTACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
13 15 0.36
14 27 0.64
ACGTcount: A:0.17, C:0.08, G:0.55, T:0.20
Consensus pattern (13 bp):
GGTAGTGAGGCTG
Left flanking sequence: Indices 48047 -- 48546
CTCCAGTTTGACCCGTTCCAGGGCCTGGAGGTGGCTGATGATCGTCTGGAGGTTCTCCTGCGACG
TCTGGATCAACCGCTTGGCACTGGCCAAGTTGCTGCGGTGGTCCCCGATCTCCTCCACCGCACTG
GCCTTGGCTCCGTCGTCCATCGCGCCAATCTTGTCGTCGGTCATGTCGTCAAACACGTTCCCAAA
CAGGAGCAGCAGGTTGGCGTTGCATATGTCCTGCAACAGCGTGATGACGATGTCCCAGTGGCCCT
CTGTTTCCAGCGACACGGCCATGGCTGTTGTTTTTCGGGCGCGCTACCATGAAGTGGTGGAGACG
GTGGTGTGGGGGAGAGTGGGAGGGAAGGTGGGGAATGGAAGAAGGTGAAGGGGTTGGGAGTGGGG
TGTGGTAAGGGAGGGGGTGTGTGGGTGTGAAGTGGGTGAGGGTGGTGGGTGTGGTGCCGAGGCGG
TGGTAGTGAGGTGATGGTAGTGCGACTATGGAGACGATAGGCCTT
Right flanking sequence: Indices 48612 -- 49111
GCAGGTACTAGTGTCGTGTGTTGAGAGGTAGCAGTTTATCGATTGGCTAGAAACTTGGTTTGGTG
GTGGAAAACCTCACCGTTGGAGTATTCCCTAAAGACGATTGTGGGGTCAAGTACACGAGTTGGGA
TAATAAAATTGGGTCTACACGTTAGTTGAGTGACAGGGAATACAAGCTACTGTGATGTGAAGTCA
TGTCTCCTCCACTCTGTGCCCATTGCGACCGATTCTTCCTAGATCGGGTTCTCAGATTTCTCCTG
TACCTAACCCCACGGTACGAATGGCTGCAAAATGTATGTGAAGTGACACAACAAAACTCCCAACA
ACCACTAGTTAAAATGTTAGAATCATGTGGGCTAACCGCATTTGCAAGTGTTTAAATTAGTACAA
CCTCCAACAGAGTTGCATCTGTTTGTGTTTTTTACAACTGCTTCCACTTGCTTCCACCTGCAGCC
CTGTCAGTAACCAACTGCTCAACCTTCCTATTCCATTTGTGTTTC
Found at i:48580 original size:13 final size:14
Alignment explanation
Indices: 48559--48611 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
48549 TAGTGGGGAC
48559 TGGGTAGTGAGGCTG
1 TGGG-AGTGAGGCTG
48574 -GGGAGTGAGGCTG
1 TGGGAGTGAGGCTG
* * *
48587 TGGTAGCGAGACTG
1 TGGGAGTGAGGCTG
48601 TGGGAGTGAGG
1 TGGGAGTGAGG
48612 GCAGGTACTA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.17, C:0.08, G:0.55, T:0.21
Consensus pattern (14 bp):
TGGGAGTGAGGCTG
Left flanking sequence: Indices 48059 -- 48558
CCGTTCCAGGGCCTGGAGGTGGCTGATGATCGTCTGGAGGTTCTCCTGCGACGTCTGGATCAACC
GCTTGGCACTGGCCAAGTTGCTGCGGTGGTCCCCGATCTCCTCCACCGCACTGGCCTTGGCTCCG
TCGTCCATCGCGCCAATCTTGTCGTCGGTCATGTCGTCAAACACGTTCCCAAACAGGAGCAGCAG
GTTGGCGTTGCATATGTCCTGCAACAGCGTGATGACGATGTCCCAGTGGCCCTCTGTTTCCAGCG
ACACGGCCATGGCTGTTGTTTTTCGGGCGCGCTACCATGAAGTGGTGGAGACGGTGGTGTGGGGG
AGAGTGGGAGGGAAGGTGGGGAATGGAAGAAGGTGAAGGGGTTGGGAGTGGGGTGTGGTAAGGGA
GGGGGTGTGTGGGTGTGAAGTGGGTGAGGGTGGTGGGTGTGGTGCCGAGGCGGTGGTAGTGAGGT
GATGGTAGTGCGACTATGGAGACGATAGGCCTTGGTAGTGGGGAC
Right flanking sequence: Indices 48612 -- 49111
GCAGGTACTAGTGTCGTGTGTTGAGAGGTAGCAGTTTATCGATTGGCTAGAAACTTGGTTTGGTG
GTGGAAAACCTCACCGTTGGAGTATTCCCTAAAGACGATTGTGGGGTCAAGTACACGAGTTGGGA
TAATAAAATTGGGTCTACACGTTAGTTGAGTGACAGGGAATACAAGCTACTGTGATGTGAAGTCA
TGTCTCCTCCACTCTGTGCCCATTGCGACCGATTCTTCCTAGATCGGGTTCTCAGATTTCTCCTG
TACCTAACCCCACGGTACGAATGGCTGCAAAATGTATGTGAAGTGACACAACAAAACTCCCAACA
ACCACTAGTTAAAATGTTAGAATCATGTGGGCTAACCGCATTTGCAAGTGTTTAAATTAGTACAA
CCTCCAACAGAGTTGCATCTGTTTGTGTTTTTTACAACTGCTTCCACTTGCTTCCACCTGCAGCC
CTGTCAGTAACCAACTGCTCAACCTTCCTATTCCATTTGTGTTTC
Found at i:51065 original size:13 final size:13
Alignment explanation
Indices: 51047--51085 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
51037 CTGCAAAGTG
51047 GCTGCAAATAAAA
1 GCTGCAAATAAAA
51060 GCTGCAAAT-AAA
1 GCTGCAAATAAAA
51072 GCTGCAAATAAAA
1 GCTGCAAATAAAA
51085 G
1 G
51086 TGGCTGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (13 bp):
GCTGCAAATAAAA
Left flanking sequence: Indices 50547 -- 51046
GTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGCATGTTGG
CAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATCTGGGAA
CCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTAAAATGGG
GAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCAAAGTTTTGCGAGCGTCAGG
CCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATACAAGTGAT
CAATTGATGAAACAAAGTAGTAATAGAAAATACCCGTAAGCCCACGTGAAGGCCCACATGAAGGA
GTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCATCTGCTC
CCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTGCAAAGTG
Right flanking sequence: Indices 51086 -- 51585
TGGCTGCAAATAGAAGTGACCGCAAATAAAAGTGGCTGCAAATAAAAGTGCGCAAATTCCAAAGT
GGCTGCAAATCTCAGTGTCTGCAAATTCCAAATGGCTGCAAATCTCAGTGTCTGCAAATTTCAGT
GTCTGCAAATTTCAATGGCTGCAAATTTCAATGGCTGCAAATTTGCAGATTTCAAAATGGTTGCA
AATGTCAACTTAACTCTTACACATTGCAACGGTTCTATCTCACCAGCTACAATCCTCCTGCTCTA
GCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTTCGCCCGTTGAGCTTTGCGTTCGG
TGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGTCTTGGACGGCGGATGGCGGCCGG
GAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTCGTACCCGGGTGCGGGCTCCGAC
ACCTCCTCGGCCTCGGAGATCGCCTCGTGGTACGTGGGCACCTCC
Found at i:51074 original size:12 final size:12
Alignment explanation
Indices: 51047--51083 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
51037 CTGCAAAGTG
51047 GCTGCAAATAAAA
1 GCTGCAAAT-AAA
51060 GCTGCAAATAAA
1 GCTGCAAATAAA
51072 GCTGCAAATAAA
1 GCTGCAAATAAA
51084 AGTGGCTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (12 bp):
GCTGCAAATAAA
Left flanking sequence: Indices 50547 -- 51046
GTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGCATGTTGG
CAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATCTGGGAA
CCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTAAAATGGG
GAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCAAAGTTTTGCGAGCGTCAGG
CCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATACAAGTGAT
CAATTGATGAAACAAAGTAGTAATAGAAAATACCCGTAAGCCCACGTGAAGGCCCACATGAAGGA
GTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCATCTGCTC
CCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTGCAAAGTG
Right flanking sequence: Indices 51084 -- 51583
AGTGGCTGCAAATAGAAGTGACCGCAAATAAAAGTGGCTGCAAATAAAAGTGCGCAAATTCCAAA
GTGGCTGCAAATCTCAGTGTCTGCAAATTCCAAATGGCTGCAAATCTCAGTGTCTGCAAATTTCA
GTGTCTGCAAATTTCAATGGCTGCAAATTTCAATGGCTGCAAATTTGCAGATTTCAAAATGGTTG
CAAATGTCAACTTAACTCTTACACATTGCAACGGTTCTATCTCACCAGCTACAATCCTCCTGCTC
TAGCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTTCGCCCGTTGAGCTTTGCGTTC
GGTGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGTCTTGGACGGCGGATGGCGGCC
GGGAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTCGTACCCGGGTGCGGGCTCCG
ACACCTCCTCGGCCTCGGAGATCGCCTCGTGGTACGTGGGCACCT
Found at i:51093 original size:16 final size:16
Alignment explanation
Indices: 51041--51160 Score: 123
Period size: 16 Copynumber: 7.9 Consensus size: 16
51031 CATTGACTGC
51041 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
51057 AAA---GCTGCAAAT-
1 AAAGTGGCTGCAAATA
51069 AAA---GCTGCAAATA
1 AAAGTGGCTGCAAATA
51082 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
* * *
51098 GAAGTGACCGCAAATA
1 AAAGTGGCTGCAAATA
51114 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
*
51130 AAAGT-GC-GCAAATTCC
1 AAAGTGGCTGCAAA-T-A
51146 AAAGTGGCTGCAAAT
1 AAAGTGGCTGCAAAT
51161 CTCAGTGTCT
Statistics
Matches: 89, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
12 12 0.13
13 12 0.13
14 5 0.06
15 3 0.03
16 49 0.55
17 3 0.03
18 5 0.06
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (16 bp):
AAAGTGGCTGCAAATA
Left flanking sequence: Indices 50541 -- 51040
ATTTCGGTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGCA
TGTTGGCAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATC
TGGGAACCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTAA
AATGGGGAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCAAAGTTTTGCGAGC
GTCAGGCCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATACA
AGTGATCAATTGATGAAACAAAGTAGTAATAGAAAATACCCGTAAGCCCACGTGAAGGCCCACAT
GAAGGAGTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCAT
CTGCTCCCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTGC
Right flanking sequence: Indices 51161 -- 51660
CTCAGTGTCTGCAAATTCCAAATGGCTGCAAATCTCAGTGTCTGCAAATTTCAGTGTCTGCAAAT
TTCAATGGCTGCAAATTTCAATGGCTGCAAATTTGCAGATTTCAAAATGGTTGCAAATGTCAACT
TAACTCTTACACATTGCAACGGTTCTATCTCACCAGCTACAATCCTCCTGCTCTAGCTCTATCTG
TTTGTTCATTAGTCATCAATGCGTGCTATTTTCGCCCGTTGAGCTTTGCGTTCGGTGGTTTGGGC
GACTTCAAGAGATTAGTGACGATTTTCTTGGTCTTGGACGGCGGATGGCGGCCGGGAGCGGGTGT
GGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTCGTACCCGGGTGCGGGCTCCGACACCTCCTCGG
CCTCGGAGATCGCCTCGTGGTACGTGGGCACCTCCAGCGGCGTCCGCACCTTTTCCCCCGACACA
GGGATGTCAAAGTACCCCAGCGGCTCGTTCTGCGAGTCGAGCGAC
Found at i:51167 original size:16 final size:16
Alignment explanation
Indices: 51148--51259 Score: 134
Period size: 16 Copynumber: 6.9 Consensus size: 16
51138 CAAATTCCAA
*
51148 AGTGGCTGCAAATCTC
1 AGTGGCTGCAAATTTC
* *
51164 AGTGTCTGCAAATTCC
1 AGTGGCTGCAAATTTC
* *
51180 AAATGGCTGCAAATCTC
1 -AGTGGCTGCAAATTTC
*
51197 AGTGTCTGCAAATTTC
1 AGTGGCTGCAAATTTC
*
51213 AGTGTCTGCAAATTTC
1 AGTGGCTGCAAATTTC
*
51229 AATGGCTGCAAATTTC
1 AGTGGCTGCAAATTTC
*
51245 AATGGCTGCAAATTT
1 AGTGGCTGCAAATTT
51260 GCAGATTTCA
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
16 71 0.86
17 12 0.14
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (16 bp):
AGTGGCTGCAAATTTC
Left flanking sequence: Indices 50648 -- 51147
GTTGGTGCCCGGTGTGTGAAATCTGGGAACCCAAAACAGAGGAAACGCTGAAACTCACCGGGCAC
CAGTTACCCGTGCACCACTGTAAAATGGGGAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAG
TCTTGTTGCAAAGTTTTGCGAGCGTCAGGCCGAGGATCGGTACGTATGGCCCAAACTATGAGACC
CGGGCAGCCGCTGAAGAAATACAAGTGATCAATTGATGAAACAAAGTAGTAATAGAAAATACCCG
TAAGCCCACGTGAAGGCCCACATGAAGGAGTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCAC
CGCCTTCTCTATGCCCTCTTCATCTGCTCCCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGAC
TGCAAAGTGGCTGCAAATAAAAGCTGCAAATAAAGCTGCAAATAAAAGTGGCTGCAAATAGAAGT
GACCGCAAATAAAAGTGGCTGCAAATAAAAGTGCGCAAATTCCAA
Right flanking sequence: Indices 51260 -- 51759
GCAGATTTCAAAATGGTTGCAAATGTCAACTTAACTCTTACACATTGCAACGGTTCTATCTCACC
AGCTACAATCCTCCTGCTCTAGCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTTCG
CCCGTTGAGCTTTGCGTTCGGTGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGTCT
TGGACGGCGGATGGCGGCCGGGAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTCG
TACCCGGGTGCGGGCTCCGACACCTCCTCGGCCTCGGAGATCGCCTCGTGGTACGTGGGCACCTC
CAGCGGCGTCCGCACCTTTTCCCCCGACACAGGGATGTCAAAGTACCCCAGCGGCTCGTTCTGCG
AGTCGAGCGACACGTCCTCGGTGTGGCGGTTGTACACCGGCGGCGGCAGCAAGTTGCGGTCCGCC
GCCAGCGTCACCTCGGCCCCGGGACTCAACTTGCGGAAAAGCGGC
Found at i:51192 original size:33 final size:32
Alignment explanation
Indices: 51137--51257 Score: 152
Period size: 32 Copynumber: 3.7 Consensus size: 32
51127 ATAAAAGTGC
51137 GCAAATTCCAAAGTGGCTGCAAATCTCAGTGTCT
1 GCAAATTCC-AA-TGGCTGCAAATCTCAGTGTCT
51171 GCAAATTCCAAATGGCTGCAAATCTCAGTGTCT
1 GCAAATTCC-AATGGCTGCAAATCTCAGTGTCT
* * * * * *
51204 GCAAATTTCAGTGTCTGCAAATTTCAATGGCT
1 GCAAATTCCAATGGCTGCAAATCTCAGTGTCT
*
51236 GCAAATTTCAATGGCTGCAAAT
1 GCAAATTCCAATGGCTGCAAAT
51258 TTGCAGATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
32 38 0.48
33 29 0.37
34 12 0.15
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (32 bp):
GCAAATTCCAATGGCTGCAAATCTCAGTGTCT
Left flanking sequence: Indices 50637 -- 51136
CGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATCTGGGAACCCAAAACAGAGGAAACGCTGAAAC
TCACCGGGCACCAGTTACCCGTGCACCACTGTAAAATGGGGAGGAATGAAACGTATCGTCGGGTG
GGGACGCTAAGTCTTGTTGCAAAGTTTTGCGAGCGTCAGGCCGAGGATCGGTACGTATGGCCCAA
ACTATGAGACCCGGGCAGCCGCTGAAGAAATACAAGTGATCAATTGATGAAACAAAGTAGTAATA
GAAAATACCCGTAAGCCCACGTGAAGGCCCACATGAAGGAGTTGGGAGGGACCGCCTGCGGTTCC
CCGGCTTCCACCGCCTTCTCTATGCCCTCTTCATCTGCTCCCGTTTTTCCGCTTTCCTCCGGTGT
GGTGCATTGACTGCAAAGTGGCTGCAAATAAAAGCTGCAAATAAAGCTGCAAATAAAAGTGGCTG
CAAATAGAAGTGACCGCAAATAAAAGTGGCTGCAAATAAAAGTGC
Right flanking sequence: Indices 51258 -- 51757
TTGCAGATTTCAAAATGGTTGCAAATGTCAACTTAACTCTTACACATTGCAACGGTTCTATCTCA
CCAGCTACAATCCTCCTGCTCTAGCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTT
CGCCCGTTGAGCTTTGCGTTCGGTGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGT
CTTGGACGGCGGATGGCGGCCGGGAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGT
CGTACCCGGGTGCGGGCTCCGACACCTCCTCGGCCTCGGAGATCGCCTCGTGGTACGTGGGCACC
TCCAGCGGCGTCCGCACCTTTTCCCCCGACACAGGGATGTCAAAGTACCCCAGCGGCTCGTTCTG
CGAGTCGAGCGACACGTCCTCGGTGTGGCGGTTGTACACCGGCGGCGGCAGCAAGTTGCGGTCCG
CCGCCAGCGTCACCTCGGCCCCGGGACTCAACTTGCGGAAAAGCG
Found at i:51259 original size:32 final size:32
Alignment explanation
Indices: 51150--51257 Score: 153
Period size: 32 Copynumber: 3.3 Consensus size: 32
51140 AATTCCAAAG
*
51150 TGGCTGCAAATCTCAGTGTCTGCAAATTCCAAA
1 TGGCTGCAAATCTCAGTGTCTGCAAATTTC-AA
*
51183 TGGCTGCAAATCTCAGTGTCTGCAAATTTCAG
1 TGGCTGCAAATCTCAGTGTCTGCAAATTTCAA
* * * *
51215 TGTCTGCAAATTTCAATGGCTGCAAATTTCAA
1 TGGCTGCAAATCTCAGTGTCTGCAAATTTCAA
51247 TGGCTGCAAAT
1 TGGCTGCAAAT
51258 TTGCAGATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
32 38 0.57
33 29 0.43
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (32 bp):
TGGCTGCAAATCTCAGTGTCTGCAAATTTCAA
Left flanking sequence: Indices 50650 -- 51149
TGGTGCCCGGTGTGTGAAATCTGGGAACCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCA
GTTACCCGTGCACCACTGTAAAATGGGGAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTC
TTGTTGCAAAGTTTTGCGAGCGTCAGGCCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCG
GGCAGCCGCTGAAGAAATACAAGTGATCAATTGATGAAACAAAGTAGTAATAGAAAATACCCGTA
AGCCCACGTGAAGGCCCACATGAAGGAGTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCG
CCTTCTCTATGCCCTCTTCATCTGCTCCCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTG
CAAAGTGGCTGCAAATAAAAGCTGCAAATAAAGCTGCAAATAAAAGTGGCTGCAAATAGAAGTGA
CCGCAAATAAAAGTGGCTGCAAATAAAAGTGCGCAAATTCCAAAG
Right flanking sequence: Indices 51258 -- 51757
TTGCAGATTTCAAAATGGTTGCAAATGTCAACTTAACTCTTACACATTGCAACGGTTCTATCTCA
CCAGCTACAATCCTCCTGCTCTAGCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTT
CGCCCGTTGAGCTTTGCGTTCGGTGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGT
CTTGGACGGCGGATGGCGGCCGGGAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGT
CGTACCCGGGTGCGGGCTCCGACACCTCCTCGGCCTCGGAGATCGCCTCGTGGTACGTGGGCACC
TCCAGCGGCGTCCGCACCTTTTCCCCCGACACAGGGATGTCAAAGTACCCCAGCGGCTCGTTCTG
CGAGTCGAGCGACACGTCCTCGGTGTGGCGGTTGTACACCGGCGGCGGCAGCAAGTTGCGGTCCG
CCGCCAGCGTCACCTCGGCCCCGGGACTCAACTTGCGGAAAAGCG
Found at i:53714 original size:14 final size:14
Alignment explanation
Indices: 53695--53729 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
53685 GCGATGGGAA
53695 GGTAGGGCGAAGAG
1 GGTAGGGCGAAGAG
53709 GGTAGGGCGAAGAG
1 GGTAGGGCGAAGAG
*
53723 AGTAGGG
1 GGTAGGG
53730 AGTGGAGACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.06, G:0.57, T:0.09
Consensus pattern (14 bp):
GGTAGGGCGAAGAG
Left flanking sequence: Indices 53195 -- 53694
CCGCGAAGTGGGCCTAGCCGGTTTTTTCTTGGGACTTTGGCCGGGGTCGTTGCTGTTTGGGGTTT
CTTTTGCTTCAGCCGCATGCACCGTTCGGTTGCGGATCGGGCCCGGGGCCGGTGACGGGTAACGT
TCGGTGCCGCCAGCGAACCCGCGAACAAACCGGGGTGCAACCGAACCGTGAGTTTCCGGCGTAGA
CGACCCGTTGGCCCTCAGGGCGTGTTCTGCCTGCATCTGTGCCATGCACATGTGGTCCCAGATAC
GGAACGCGACAACCGTTGGTGCGAGTGATAAGCGGGGTAGGCGGTGGTGGCGGGATGGCGGAGCG
ATTGGGGGTAGCCAGGTGGGTTGGTGGGTAGTGGGGATGGTGGTGGAGGTTTTCTACGGGGCTGG
TGGGCGTTTAATGGGCGGGGGCTCGCTGGGTGGGGGTCCGAAGCCTGTGCGTGTTTCACCTGAAT
ATTTTTTAAACGTGGTCGGAAGCGGCACATTGGAGGCGATGGGAA
Right flanking sequence: Indices 53730 -- 54229
AGTGGAGACGGTTGGGGGGTATGGTTTGTGGTAAGAGAAGGTGTTCTGATTTTTTGTTTCTTTTT
GGCTTCTTTCTATATGGTGGTGTGTCGGTGTTCATTGCAAATAGCCGGTTTTGTGGCCTTCTGCC
CGGATTCGTGTCGCTCTTGGCGATCTCGTCTGTGGAAATGTCACGTCGCATTGGGTTGGGTCAAT
TGGGGGGTAATTTGCCGAGAGCTGTAGATGTGTTGGGTGGTTGGGAAGTCTACATCGGCCTTGGC
CTAGAAGTGGTTGGGTAGTTATTCTGATTACAACTGGTGACTGATAAAAAGGGCTGTTGATTTAA
AAGTAGTCCCGGTTGCAATAGGGCCAAAGAAAGTCACCGCAAGCAGCTCATAACATTGCTCAACT
TGCACGTCGCCAACGTCATACAGCCTATTCCCAAAGTGCGATGGATATTACCCCTTTCGACCATC
ACCACAAACACCACCTAGAACACCGGAAAAATACAACAGCCACCC
Found at i:54289 original size:12 final size:12
Alignment explanation
Indices: 54274--54304 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
54264 CCCTCTCTCC
54274 CACCCCTTATCG
1 CACCCCTTATCG
54286 CA-CCCTTATCG
1 CACCCCTTATCG
54297 CACCCCTT
1 CACCCCTT
54305 TGCCTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.16, C:0.52, G:0.06, T:0.26
Consensus pattern (12 bp):
CACCCCTTATCG
Left flanking sequence: Indices 53774 -- 54273
TCTGATTTTTTGTTTCTTTTTGGCTTCTTTCTATATGGTGGTGTGTCGGTGTTCATTGCAAATAG
CCGGTTTTGTGGCCTTCTGCCCGGATTCGTGTCGCTCTTGGCGATCTCGTCTGTGGAAATGTCAC
GTCGCATTGGGTTGGGTCAATTGGGGGGTAATTTGCCGAGAGCTGTAGATGTGTTGGGTGGTTGG
GAAGTCTACATCGGCCTTGGCCTAGAAGTGGTTGGGTAGTTATTCTGATTACAACTGGTGACTGA
TAAAAAGGGCTGTTGATTTAAAAGTAGTCCCGGTTGCAATAGGGCCAAAGAAAGTCACCGCAAGC
AGCTCATAACATTGCTCAACTTGCACGTCGCCAACGTCATACAGCCTATTCCCAAAGTGCGATGG
ATATTACCCCTTTCGACCATCACCACAAACACCACCTAGAACACCGGAAAAATACAACAGCCACC
CTACATACACCCCAGTACACCGCTCTACATCGCCACCCTCTCTCC
Right flanking sequence: Indices 54305 -- 54804
TGCCTCTTCTCCCCTTTCCTTCCCTCGTGCTCACCCACCCATCTCTTTTCGCTCATCGCAGGCAT
CGCGACTCATCACCACACCATGAGACAGAAGCGAGCCAAGAGCTACCGCAAGCACATGGCGGTGT
ACGTGCACACCTTCAAGTTCCGCGAGCCCTACCAGACGATTGTCGACCTGGGCCTCGTCGAGCTC
TGCCACAAGAACCGCTACGACCTCGCCAAGGGCCTCGAGCGCACCGTCCAGGCCCCGATCAAGGT
GATGATCACCCAGTGCCTGATGGAGGAGCTCTACAAGACCAAGAACCAGGAGGCGATTGACATTG
CCAAGCGGTTTGAGCGCAGACGGTGCAACCACAAGCCCGCGGTGGGCGGCGACGAGTGTATCGAG
CTGATCACTGCTGTCAACGGGGCCAACAAGTTCCGGTACGTCATCGCGGCCCAGCTGGAGGAGTT
GCGTCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTTAT
Found at i:55069 original size:6 final size:6
Alignment explanation
Indices: 55060--55106 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
55050 GCGAGGATGG
* *
55060 TGAGAA TGAGAA CGAGAA TG-G-- TGAGAA TGAGAA TGGGAA TGAGAA
1 TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA
55105 TG
1 TG
55107 GTGGTAACGA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
3 2 0.06
4 1 0.03
5 1 0.03
6 30 0.88
ACGTcount: A:0.43, C:0.02, G:0.38, T:0.17
Consensus pattern (6 bp):
TGAGAA
Left flanking sequence: Indices 54560 -- 55059
AAGGTGATGATCACCCAGTGCCTGATGGAGGAGCTCTACAAGACCAAGAACCAGGAGGCGATTGA
CATTGCCAAGCGGTTTGAGCGCAGACGGTGCAACCACAAGCCCGCGGTGGGCGGCGACGAGTGTA
TCGAGCTGATCACTGCTGTCAACGGGGCCAACAAGTTCCGGTACGTCATCGCGGCCCAGCTGGAG
GAGTTGCGTCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTTATGAAACAGCTGGTGAT
GGTGATGGAGCACATGCTGGACGCCACCAAGAGACAGAACGAGGCCACCGAGGCCGCCAAGTTGA
CGCTGGGGCTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCACAAGAAGCGCAAGGCCAAG
GGCCCCAACCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAGCGAGGAGCCGTCGCAGAA
GAAGACCCGCCGGAAACGGGGAAAGAAGAAGGAGGGCGAGGATGG
Right flanking sequence: Indices 55107 -- 55606
GTGGTAACGAAAATGGTGACGAAAATGACAACGAAAATGGTCAGGACCACGAGCAGGACCACAAG
ACAAACACCGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGACTCTGAATAATTTGCATAGGTAAT
ACACTGGGATTGAACGGTAGACACTATAGAGCACCGTGTAGAACACCGCGTAGAACACCGTGTAA
AACACCGTGTAGAACACCCAGTTCCGTGTAGCGCTCAAAACGTCTGCTTAGACTACAGACCACTT
CGCTTTGTGCCACGCTTTGTGCCACATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTCGATGTT
TCAGATCTTGTTTCACCTATCACTTCTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGA
CTAGCCATGCACACCAACGCACCACCCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCG
ACGCGTCCTCGCTTAGCCCTATTGTGTCAGCTCGTGGTTGCTCTG
Found at i:55086 original size:15 final size:15
Alignment explanation
Indices: 55066--55125 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
55056 ATGGTGAGAA
55066 TGAGAACGAGAATGG
1 TGAGAACGAGAATGG
*
55081 TGAGAATGAGAAT-G
1 TGAGAACGAGAATGG
*
55095 -G-GAATGAGAATGG
1 TGAGAACGAGAATGG
*
55108 TG-GTAACGAAAATGG
1 TGAG-AACGAGAATGG
55123 TGA
1 TGA
55126 CGAAAATGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 10 0.26
13 2 0.05
14 3 0.08
15 23 0.61
ACGTcount: A:0.40, C:0.03, G:0.38, T:0.18
Consensus pattern (15 bp):
TGAGAACGAGAATGG
Left flanking sequence: Indices 54566 -- 55065
ATGATCACCCAGTGCCTGATGGAGGAGCTCTACAAGACCAAGAACCAGGAGGCGATTGACATTGC
CAAGCGGTTTGAGCGCAGACGGTGCAACCACAAGCCCGCGGTGGGCGGCGACGAGTGTATCGAGC
TGATCACTGCTGTCAACGGGGCCAACAAGTTCCGGTACGTCATCGCGGCCCAGCTGGAGGAGTTG
CGTCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTTATGAAACAGCTGGTGATGGTGAT
GGAGCACATGCTGGACGCCACCAAGAGACAGAACGAGGCCACCGAGGCCGCCAAGTTGACGCTGG
GGCTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCACAAGAAGCGCAAGGCCAAGGGCCCC
AACCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAGCGAGGAGCCGTCGCAGAAGAAGAC
CCGCCGGAAACGGGGAAAGAAGAAGGAGGGCGAGGATGGTGAGAA
Right flanking sequence: Indices 55126 -- 55625
CGAAAATGACAACGAAAATGGTCAGGACCACGAGCAGGACCACAAGACAAACACCGACGCTCCGG
CTGTGCCTGAGCCTGAGGCTGACTCTGAATAATTTGCATAGGTAATACACTGGGATTGAACGGTA
GACACTATAGAGCACCGTGTAGAACACCGCGTAGAACACCGTGTAAAACACCGTGTAGAACACCC
AGTTCCGTGTAGCGCTCAAAACGTCTGCTTAGACTACAGACCACTTCGCTTTGTGCCACGCTTTG
TGCCACATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTCGATGTTTCAGATCTTGTTTCACCTA
TCACTTCTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGACTAGCCATGCACACCAACG
CACCACCCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCGACGCGTCCTCGCTTAGCCC
TATTGTGTCAGCTCGTGGTTGCTCTGTTGGTAACACAGTGGCACC
Found at i:55100 original size:21 final size:21
Alignment explanation
Indices: 55051--55092 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
55041 AGAAGGAGGG
*
55051 CGAGGATGGTGAGAATGAGAA
1 CGAGAATGGTGAGAATGAGAA
55072 CGAGAATGGTGAGAATGAGAA
1 CGAGAATGGTGAGAATGAGAA
55093 TGGGAATGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.40, T:0.14
Consensus pattern (21 bp):
CGAGAATGGTGAGAATGAGAA
Left flanking sequence: Indices 54551 -- 55050
GCCCCGATCAAGGTGATGATCACCCAGTGCCTGATGGAGGAGCTCTACAAGACCAAGAACCAGGA
GGCGATTGACATTGCCAAGCGGTTTGAGCGCAGACGGTGCAACCACAAGCCCGCGGTGGGCGGCG
ACGAGTGTATCGAGCTGATCACTGCTGTCAACGGGGCCAACAAGTTCCGGTACGTCATCGCGGCC
CAGCTGGAGGAGTTGCGTCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTTATGAAACA
GCTGGTGATGGTGATGGAGCACATGCTGGACGCCACCAAGAGACAGAACGAGGCCACCGAGGCCG
CCAAGTTGACGCTGGGGCTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCACAAGAAGCGC
AAGGCCAAGGGCCCCAACCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAGCGAGGAGCC
GTCGCAGAAGAAGACCCGCCGGAAACGGGGAAAGAAGAAGGAGGG
Right flanking sequence: Indices 55093 -- 55592
TGGGAATGAGAATGGTGGTAACGAAAATGGTGACGAAAATGACAACGAAAATGGTCAGGACCACG
AGCAGGACCACAAGACAAACACCGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGACTCTGAATAA
TTTGCATAGGTAATACACTGGGATTGAACGGTAGACACTATAGAGCACCGTGTAGAACACCGCGT
AGAACACCGTGTAAAACACCGTGTAGAACACCCAGTTCCGTGTAGCGCTCAAAACGTCTGCTTAG
ACTACAGACCACTTCGCTTTGTGCCACGCTTTGTGCCACATTGCGCCACGCGGTACGCGTCGGTG
GCGTGTTCGATGTTTCAGATCTTGTTTCACCTATCACTTCTCACTCACCGATGATCTGCGGTTAC
TCACGACTAGCAGACTAGCCATGCACACCAACGCACCACCCCCACGCCACCTCCACGCCAATTAT
CACCTGTCACCGCGACGCGTCCTCGCTTAGCCCTATTGTGTCAGC
Found at i:55123 original size:12 final size:12
Alignment explanation
Indices: 55108--55147 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
55098 ATGAGAATGG
55108 TGGTAACGAAAA
1 TGGTAACGAAAA
*
55120 TGGTGACGAAAA
1 TGGTAACGAAAA
**
55132 TGACAACGAAAA
1 TGGTAACGAAAA
55144 TGGT
1 TGGT
55148 CAGGACCACG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.28, T:0.17
Consensus pattern (12 bp):
TGGTAACGAAAA
Left flanking sequence: Indices 54608 -- 55107
AACCAGGAGGCGATTGACATTGCCAAGCGGTTTGAGCGCAGACGGTGCAACCACAAGCCCGCGGT
GGGCGGCGACGAGTGTATCGAGCTGATCACTGCTGTCAACGGGGCCAACAAGTTCCGGTACGTCA
TCGCGGCCCAGCTGGAGGAGTTGCGTCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTT
ATGAAACAGCTGGTGATGGTGATGGAGCACATGCTGGACGCCACCAAGAGACAGAACGAGGCCAC
CGAGGCCGCCAAGTTGACGCTGGGGCTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCACA
AGAAGCGCAAGGCCAAGGGCCCCAACCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAGC
GAGGAGCCGTCGCAGAAGAAGACCCGCCGGAAACGGGGAAAGAAGAAGGAGGGCGAGGATGGTGA
GAATGAGAACGAGAATGGTGAGAATGAGAATGGGAATGAGAATGG
Right flanking sequence: Indices 55148 -- 55647
CAGGACCACGAGCAGGACCACAAGACAAACACCGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGA
CTCTGAATAATTTGCATAGGTAATACACTGGGATTGAACGGTAGACACTATAGAGCACCGTGTAG
AACACCGCGTAGAACACCGTGTAAAACACCGTGTAGAACACCCAGTTCCGTGTAGCGCTCAAAAC
GTCTGCTTAGACTACAGACCACTTCGCTTTGTGCCACGCTTTGTGCCACATTGCGCCACGCGGTA
CGCGTCGGTGGCGTGTTCGATGTTTCAGATCTTGTTTCACCTATCACTTCTCACTCACCGATGAT
CTGCGGTTACTCACGACTAGCAGACTAGCCATGCACACCAACGCACCACCCCCACGCCACCTCCA
CGCCAATTATCACCTGTCACCGCGACGCGTCCTCGCTTAGCCCTATTGTGTCAGCTCGTGGTTGC
TCTGTTGGTAACACAGTGGCACCCGGAAACCACGCAGTAACCACA
Found at i:55283 original size:12 final size:12
Alignment explanation
Indices: 55263--55319 Score: 87
Period size: 12 Copynumber: 4.8 Consensus size: 12
55253 GTAGACACTA
*
55263 TAGAGCACCGTG
1 TAGAACACCGTG
*
55275 TAGAACACCGCG
1 TAGAACACCGTG
55287 TAGAACACCGTG
1 TAGAACACCGTG
*
55299 TAAAACACCGTG
1 TAGAACACCGTG
55311 TAGAACACC
1 TAGAACACC
55320 CAGTTCCGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 40 1.00
ACGTcount: A:0.35, C:0.28, G:0.23, T:0.14
Consensus pattern (12 bp):
TAGAACACCGTG
Left flanking sequence: Indices 54763 -- 55262
TCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTTATGAAACAGCTGGTGATGGTGATGG
AGCACATGCTGGACGCCACCAAGAGACAGAACGAGGCCACCGAGGCCGCCAAGTTGACGCTGGGG
CTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCACAAGAAGCGCAAGGCCAAGGGCCCCAA
CCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAGCGAGGAGCCGTCGCAGAAGAAGACCC
GCCGGAAACGGGGAAAGAAGAAGGAGGGCGAGGATGGTGAGAATGAGAACGAGAATGGTGAGAAT
GAGAATGGGAATGAGAATGGTGGTAACGAAAATGGTGACGAAAATGACAACGAAAATGGTCAGGA
CCACGAGCAGGACCACAAGACAAACACCGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGACTCTG
AATAATTTGCATAGGTAATACACTGGGATTGAACGGTAGACACTA
Right flanking sequence: Indices 55320 -- 55819
CAGTTCCGTGTAGCGCTCAAAACGTCTGCTTAGACTACAGACCACTTCGCTTTGTGCCACGCTTT
GTGCCACATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTCGATGTTTCAGATCTTGTTTCACCT
ATCACTTCTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGACTAGCCATGCACACCAAC
GCACCACCCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCGACGCGTCCTCGCTTAGCC
CTATTGTGTCAGCTCGTGGTTGCTCTGTTGGTAACACAGTGGCACCCGGAAACCACGCAGTAACC
ACACCTCGAGAAAAACGTACGAAAACGCGACCGAGCCATGAGTGAAAACCAGCAAAACTACCGCT
ACAAACCCGCTACAACCTCACCCCGACCCCCCTCATCACCTACCCCCGCGCTACCGACCATTATT
CCCCCACAGCCTCAGCTTTGTCCTTCACCCAACAGAACAAAGAAA
Found at i:55384 original size:12 final size:12
Alignment explanation
Indices: 55367--55391 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55357 CAGACCACTT
55367 CGCTTTGTGCCA
1 CGCTTTGTGCCA
55379 CGCTTTGTGCCA
1 CGCTTTGTGCCA
55391 C
1 C
55392 ATTGCGCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.36, G:0.24, T:0.32
Consensus pattern (12 bp):
CGCTTTGTGCCA
Left flanking sequence: Indices 54867 -- 55366
CCGAGGCCGCCAAGTTGACGCTGGGGCTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCAC
AAGAAGCGCAAGGCCAAGGGCCCCAACCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAG
CGAGGAGCCGTCGCAGAAGAAGACCCGCCGGAAACGGGGAAAGAAGAAGGAGGGCGAGGATGGTG
AGAATGAGAACGAGAATGGTGAGAATGAGAATGGGAATGAGAATGGTGGTAACGAAAATGGTGAC
GAAAATGACAACGAAAATGGTCAGGACCACGAGCAGGACCACAAGACAAACACCGACGCTCCGGC
TGTGCCTGAGCCTGAGGCTGACTCTGAATAATTTGCATAGGTAATACACTGGGATTGAACGGTAG
ACACTATAGAGCACCGTGTAGAACACCGCGTAGAACACCGTGTAAAACACCGTGTAGAACACCCA
GTTCCGTGTAGCGCTCAAAACGTCTGCTTAGACTACAGACCACTT
Right flanking sequence: Indices 55392 -- 55891
ATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTCGATGTTTCAGATCTTGTTTCACCTATCACTT
CTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGACTAGCCATGCACACCAACGCACCAC
CCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCGACGCGTCCTCGCTTAGCCCTATTGT
GTCAGCTCGTGGTTGCTCTGTTGGTAACACAGTGGCACCCGGAAACCACGCAGTAACCACACCTC
GAGAAAAACGTACGAAAACGCGACCGAGCCATGAGTGAAAACCAGCAAAACTACCGCTACAAACC
CGCTACAACCTCACCCCGACCCCCCTCATCACCTACCCCCGCGCTACCGACCATTATTCCCCCAC
AGCCTCAGCTTTGTCCTTCACCCAACAGAACAAAGAAATGCAAGGGTTTAGTGCGCGCATGCACC
TGCGTTACCCCCGATCAGCCAGCAAAGTGGGCCCACCCAGGCCCC
Found at i:57166 original size:21 final size:18
Alignment explanation
Indices: 57142--57185 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 18
57132 GTACGTACTT
57142 TGTTTGTACGTGGTTTGTAC
1 TGTTTGTACGT-GTTT-TAC
57162 GTGTTTGTACGTGTTTTAC
1 -TGTTTGTACGTGTTTTAC
57181 TGTTT
1 TGTTT
57186 TACTGTCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.22
19 3 0.13
20 4 0.17
21 11 0.48
ACGTcount: A:0.09, C:0.09, G:0.27, T:0.55
Consensus pattern (18 bp):
TGTTTGTACGTGTTTTAC
Left flanking sequence: Indices 56642 -- 57141
CTGGGCGGGCTCAAAGACATCTTTGGCCAGCCGATCCAGCAGCAGGATATGAGCAACCCCACCCG
ATCCCGCAACGAGCGCCCCCTTGACACCATCCGGGGGTTTGAGTATGCTATCACCGGTGATCTCG
GGTACCGTGACCAGTTGGAGACCACGCGGTTGGGGTGGGGGTTCCACGAAGACTTCCACTACGCC
AACTTGAACGAGAGCGCGCGTGCTGCCACCTCCGCAGGTCCGGGAGGGGCAGCGGACATGGGGTT
CGCCCGGCCCCAGTTTGCCGAGCAGGCGATGTACCAGGCAGGGAACTATCTGGCGCTGAGTTTGA
AGGAGGCGGGAGGTAAAAAGAAGAAGAAGAAGGGAGGGTTGTTTGGCCGCAAGAAGTGATTTTAT
GTAACGCTGTACGAGTATATGTTTTGGGAAAAAGTGTAGGCAGATGGGCTAGGTGGTAGGTTTGG
TGTGCTATGTGTGTTGGTTGTGTTGGTGTGTGTTTGTACGTACTT
Right flanking sequence: Indices 57186 -- 57685
TACTGTCTCACTGTCTCACTGTCTCACTTCGTTTGTACGTGAATTGTACGTGTTGTACGTAAGCC
TGTGAAAAATTCCCTCGGACGGGATAACGCGTCTCTGCGTGGATCGCGGGGAAGACAATGACACC
GCGCAAAATCGCCTGTTGTGTGGTGGCGTGTGTGTGCGAGGGTGTTTAAGACTCTGTTTCACCTT
CCCGCCCCCGCTTGCGTGGCGCGGTCATCTAGCGTCGCATTTGATCGCTGCGTAAGTACGCTATT
AGACGGGAACGGAAGGAGCAGTGGGGTGGAGGAGAGGGGACACGAACAGGGGTGGTGGGACACGC
GACGAAGAAGGCGTGCTGGGGGGTGGAGAGTAGGTGGGAAGTGGGTAAAAGGTGGGAAGTGGATA
AGGTGGGCAAAGTGTGGTTTAAATGGGAAGTGTAAAATGGTGGCTATGAAGTTGACCAGTATACC
CACGCGTTGATTCAGAGAGTGTTCAGGTTGTTCAAGTACCCACAT
Found at i:57169 original size:10 final size:10
Alignment explanation
Indices: 57142--57185 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
57132 GTACGTACTT
57142 TGTTTGTACG
1 TGTTTGTACG
57152 TGGTTTGTACG
1 T-GTTTGTACG
57163 TGTTTGTACG
1 TGTTTGTACG
57173 TGTTT-TAC-
1 TGTTTGTACG
57181 TGTTT
1 TGTTT
57186 TACTGTCTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 5 0.15
9 3 0.09
10 15 0.45
11 10 0.30
ACGTcount: A:0.09, C:0.09, G:0.27, T:0.55
Consensus pattern (10 bp):
TGTTTGTACG
Left flanking sequence: Indices 56642 -- 57141
CTGGGCGGGCTCAAAGACATCTTTGGCCAGCCGATCCAGCAGCAGGATATGAGCAACCCCACCCG
ATCCCGCAACGAGCGCCCCCTTGACACCATCCGGGGGTTTGAGTATGCTATCACCGGTGATCTCG
GGTACCGTGACCAGTTGGAGACCACGCGGTTGGGGTGGGGGTTCCACGAAGACTTCCACTACGCC
AACTTGAACGAGAGCGCGCGTGCTGCCACCTCCGCAGGTCCGGGAGGGGCAGCGGACATGGGGTT
CGCCCGGCCCCAGTTTGCCGAGCAGGCGATGTACCAGGCAGGGAACTATCTGGCGCTGAGTTTGA
AGGAGGCGGGAGGTAAAAAGAAGAAGAAGAAGGGAGGGTTGTTTGGCCGCAAGAAGTGATTTTAT
GTAACGCTGTACGAGTATATGTTTTGGGAAAAAGTGTAGGCAGATGGGCTAGGTGGTAGGTTTGG
TGTGCTATGTGTGTTGGTTGTGTTGGTGTGTGTTTGTACGTACTT
Right flanking sequence: Indices 57186 -- 57685
TACTGTCTCACTGTCTCACTGTCTCACTTCGTTTGTACGTGAATTGTACGTGTTGTACGTAAGCC
TGTGAAAAATTCCCTCGGACGGGATAACGCGTCTCTGCGTGGATCGCGGGGAAGACAATGACACC
GCGCAAAATCGCCTGTTGTGTGGTGGCGTGTGTGTGCGAGGGTGTTTAAGACTCTGTTTCACCTT
CCCGCCCCCGCTTGCGTGGCGCGGTCATCTAGCGTCGCATTTGATCGCTGCGTAAGTACGCTATT
AGACGGGAACGGAAGGAGCAGTGGGGTGGAGGAGAGGGGACACGAACAGGGGTGGTGGGACACGC
GACGAAGAAGGCGTGCTGGGGGGTGGAGAGTAGGTGGGAAGTGGGTAAAAGGTGGGAAGTGGATA
AGGTGGGCAAAGTGTGGTTTAAATGGGAAGTGTAAAATGGTGGCTATGAAGTTGACCAGTATACC
CACGCGTTGATTCAGAGAGTGTTCAGGTTGTTCAAGTACCCACAT
Found at i:57198 original size:8 final size:8
Alignment explanation
Indices: 57187--57213 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
57177 TTACTGTTTT
57187 ACTGTCTC
1 ACTGTCTC
57195 ACTGTCTC
1 ACTGTCTC
57203 ACTGTCTC
1 ACTGTCTC
57211 ACT
1 ACT
57214 TCGTTTGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.15, C:0.37, G:0.11, T:0.37
Consensus pattern (8 bp):
ACTGTCTC
Left flanking sequence: Indices 56687 -- 57186
GATATGAGCAACCCCACCCGATCCCGCAACGAGCGCCCCCTTGACACCATCCGGGGGTTTGAGTA
TGCTATCACCGGTGATCTCGGGTACCGTGACCAGTTGGAGACCACGCGGTTGGGGTGGGGGTTCC
ACGAAGACTTCCACTACGCCAACTTGAACGAGAGCGCGCGTGCTGCCACCTCCGCAGGTCCGGGA
GGGGCAGCGGACATGGGGTTCGCCCGGCCCCAGTTTGCCGAGCAGGCGATGTACCAGGCAGGGAA
CTATCTGGCGCTGAGTTTGAAGGAGGCGGGAGGTAAAAAGAAGAAGAAGAAGGGAGGGTTGTTTG
GCCGCAAGAAGTGATTTTATGTAACGCTGTACGAGTATATGTTTTGGGAAAAAGTGTAGGCAGAT
GGGCTAGGTGGTAGGTTTGGTGTGCTATGTGTGTTGGTTGTGTTGGTGTGTGTTTGTACGTACTT
TGTTTGTACGTGGTTTGTACGTGTTTGTACGTGTTTTACTGTTTT
Right flanking sequence: Indices 57214 -- 57713
TCGTTTGTACGTGAATTGTACGTGTTGTACGTAAGCCTGTGAAAAATTCCCTCGGACGGGATAAC
GCGTCTCTGCGTGGATCGCGGGGAAGACAATGACACCGCGCAAAATCGCCTGTTGTGTGGTGGCG
TGTGTGTGCGAGGGTGTTTAAGACTCTGTTTCACCTTCCCGCCCCCGCTTGCGTGGCGCGGTCAT
CTAGCGTCGCATTTGATCGCTGCGTAAGTACGCTATTAGACGGGAACGGAAGGAGCAGTGGGGTG
GAGGAGAGGGGACACGAACAGGGGTGGTGGGACACGCGACGAAGAAGGCGTGCTGGGGGGTGGAG
AGTAGGTGGGAAGTGGGTAAAAGGTGGGAAGTGGATAAGGTGGGCAAAGTGTGGTTTAAATGGGA
AGTGTAAAATGGTGGCTATGAAGTTGACCAGTATACCCACGCGTTGATTCAGAGAGTGTTCAGGT
TGTTCAAGTACCCACATAGCTCTTGTTCTTCTTCGCTCGTGTTCG
Found at i:58289 original size:10 final size:10
Alignment explanation
Indices: 58274--58300 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
58264 ACCACTACAG
58274 CCACCTCTGA
1 CCACCTCTGA
58284 CCACCTCTGA
1 CCACCTCTGA
58294 CCACCTC
1 CCACCTC
58301 CCCTCTCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.56, G:0.07, T:0.19
Consensus pattern (10 bp):
CCACCTCTGA
Left flanking sequence: Indices 57774 -- 58273
GTCGTATAACTACGAGCCACGCTAATAACCAAAAAAGGCAAAATAGACTCAATGGCACGTCCACC
AAGTGCTCCCTACAAATACATGTGGCGAGATCGCCGGGGGTGGCTTAAACGTGCACGGCGATCCG
CGAGACACACCCGGGCTGCTGAACACCACTTTGCGTAGTTCCATCCCGCAATACGCCGTAGCGTA
GACTAGTGCCCGACTATCTGTGGTGTCCACCCAAAACACCCGCCACCCTCCCCACGCTTCTTCCC
ACGGCCACACCGCCCGGTGCCCCTGTGGGGTAGATCCACCCCTGGAGTCGATCCCTGCCCTCCAC
TTCCCGTTTCGGTAGCTTGCATCCACGTGGATAACCCCAGTGGACCACCCGGTGCTTCCCCTCGT
CATGAGCCACCTTCCTAAAACAAAGGCTCGGCTAAGCCAAACAATACAACGTCTCGGCTGCGCCT
GTCGTATCACGCCCACCAAGGTAAGTGGTGCCCGAACCACTACAG
Right flanking sequence: Indices 58301 -- 58800
CCCTCTCTCCTCTGCTCTCGTCACAAACCGTGTTTCAGACTCGTACCCCATACATCCGCCCAAAC
ACCACCAGGCGCCAACCGTAACCTACCAACTACCTACCAACTACACAATCAAACCCTTACTAGAA
CCCACACCGCTAAACCACCCCCCTCCATCGCCGCCCGACAATGCTCCGAAACATTCCGACGTACC
TCCACCCGCACTCTCCATTATGCACCTTGACGATGTCCTGTCGATCCCCACGCGTAGACGTACCC
ACCCAAAACACGGGCAAACACCCGATCGCCCACACAAACCCACCCACCCCACCAACCCCCGCCCG
TAAACCACCCCGTAGCCCCGCCACCAGGCCCGCCCAGCCCCCACCGTGGTCCCCGGTACCTGCGT
GCGGCTCGGTTTCACAGTGGAATGCGTGTTGAAACACGTCGCATTCACCGGCAAAGTTTCGAAAC
ACGCCCAGCCATGGACACCGAGATGTTGGAGCCTCCGCGCCAGGT
Found at i:66024 original size:26 final size:26
Alignment explanation
Indices: 65995--66049 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
65985 TGCTCTTCAC
65995 CCTACTCCTCACCACCCTA-TCCACCA
1 CCTACTCCTCACCACCC-ACTCCACCA
* *
66021 CCTACTCTTCACCACTCACTCCACCA
1 CCTACTCCTCACCACCCACTCCACCA
66047 CCT
1 CCT
66050 TCACCCCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.22, C:0.56, G:0.00, T:0.22
Consensus pattern (26 bp):
CCTACTCCTCACCACCCACTCCACCA
Left flanking sequence: Indices 65495 -- 65994
GCCGTCGTGAACCAACGAGGTTCTGAGGACAACCTTCAAGCAGTCCTCGATGGAGACGGCCTGCT
CGGTTTCCTGCTGGGGAACTTCTTCGATAACTTCGGTGTCAGACATATTAGTAACTTGTCAGTAT
TAACTTCGTCCAAGTGGTGAGTGAAAAATTGGTTTGAAAATTTTTAAAGGGTTGGCGTGTGCAGG
CTGCGAGGTGCATGATGGGGGAGAGATGAAGGAAGAAAAGGGTGGGGCGAAGAAGGAGGAGATGT
AGTATGGAGAGAGATGGTGTGGAGTGCTAAGCTAACAGTTGTTTGTTTGCCTTTGGTTTGGTGTC
CCTGGTGTACCTGTCTGATCCACAATTAATGATTTTGTATTGTGCACGTGACTTTAGGGTACAAC
CCTATTTAAGAGTATAACCAAGACCATCACCACTCCTACCACAGCATCCCCGGCCAGCAAGCGTG
CTAGTCGCACCACGACTACTCTACTCTTACCACCCTGCTCTTCAC
Right flanking sequence: Indices 66050 -- 66549
TCACCCCTCTCGTCCTATCATTATCTGTATTCAAGCATTATCTACATCCTAAGCATTGTCCAACA
AGTAGTTGGTGGCCTCGGCCACATCCCACTGCTGCTTGCGCAACGCCTCGAGCGAGGTGGAGTAG
TCAAACCCCATCCCCACGAGCTCCTGCACCGACGCCTCCTGGTCAGTGGAGAGCGGCTGGTCGGA
GCTGGTCTTGGAAGGCACGGACCCACCAGAGGGAACGGTGGGGGTGCCCGTAGGGGTCCCCGCGG
GGGAACCAGCGCCCACAATGCCAGCAGCACCGGTGGCAGGCGCAGAGGTGGGCTCGCGAGTGGCG
TCCTCGAGCTTGGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCATTCGTCGTCACCGCCAGCACC
AGAGCCAGCAGGGCCAGAGCCAGCAGGGCCAGCGGGGCCAGCACCAGCACCAGCACCAAGGCCAG
CACCAGCACCAGCTCCGTAGTTGGCAACACCCGACACCGAGCGGG
Found at i:66455 original size:9 final size:9
Alignment explanation
Indices: 66443--66482 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
66433 CAGCACCAGA
66443 GCCAGCAGG
1 GCCAGCAGG
66452 GCCAG-A--
1 GCCAGCAGG
66458 GCCAGCAGG
1 GCCAGCAGG
*
66467 GCCAGCGGG
1 GCCAGCAGG
66476 GCCAGCA
1 GCCAGCA
66483 CCAGCACCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
6 5 0.19
7 1 0.04
8 1 0.04
9 19 0.73
ACGTcount: A:0.23, C:0.35, G:0.42, T:0.00
Consensus pattern (9 bp):
GCCAGCAGG
Left flanking sequence: Indices 65943 -- 66442
AAGCGTGCTAGTCGCACCACGACTACTCTACTCTTACCACCCTGCTCTTCACCCTACTCCTCACC
ACCCTATCCACCACCTACTCTTCACCACTCACTCCACCACCTTCACCCCTCTCGTCCTATCATTA
TCTGTATTCAAGCATTATCTACATCCTAAGCATTGTCCAACAAGTAGTTGGTGGCCTCGGCCACA
TCCCACTGCTGCTTGCGCAACGCCTCGAGCGAGGTGGAGTAGTCAAACCCCATCCCCACGAGCTC
CTGCACCGACGCCTCCTGGTCAGTGGAGAGCGGCTGGTCGGAGCTGGTCTTGGAAGGCACGGACC
CACCAGAGGGAACGGTGGGGGTGCCCGTAGGGGTCCCCGCGGGGGAACCAGCGCCCACAATGCCA
GCAGCACCGGTGGCAGGCGCAGAGGTGGGCTCGCGAGTGGCGTCCTCGAGCTTGGCGTTGCCAAA
CCCGGCAAAGAGCTGCTCCCATTCGTCGTCACCGCCAGCACCAGA
Right flanking sequence: Indices 66483 -- 66982
CCAGCACCAGCACCAAGGCCAGCACCAGCACCAGCTCCGTAGTTGGCAACACCCGACACCGAGCG
GGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGGGGAACT
CCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCGTCCTTG
GCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGCCAGCTT
GCCCTGCGGCAGCTGCGACCGCTGGAACAGCTCCACCGCGTCGTCAAACTTCTCGCCACGGGCCT
CCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCGATGCGG
GACCGGGCAGCAGCAGCGCCAGCGGCAGCTCCAACGCCAGCAGCAGTGCCAGCAGCAGCACCACC
ACCAACACCACCAGCTCCACCAGCTCCACCAACACCACCCTCGTC
Found at i:66458 original size:15 final size:15
Alignment explanation
Indices: 66438--66471 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
66428 ACCGCCAGCA
66438 CCAGAGCCAGCAGGG
1 CCAGAGCCAGCAGGG
66453 CCAGAGCCAGCAGGG
1 CCAGAGCCAGCAGGG
66468 CCAG
1 CCAG
66472 CGGGGCCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.35, G:0.38, T:0.00
Consensus pattern (15 bp):
CCAGAGCCAGCAGGG
Left flanking sequence: Indices 65938 -- 66437
CCAGCAAGCGTGCTAGTCGCACCACGACTACTCTACTCTTACCACCCTGCTCTTCACCCTACTCC
TCACCACCCTATCCACCACCTACTCTTCACCACTCACTCCACCACCTTCACCCCTCTCGTCCTAT
CATTATCTGTATTCAAGCATTATCTACATCCTAAGCATTGTCCAACAAGTAGTTGGTGGCCTCGG
CCACATCCCACTGCTGCTTGCGCAACGCCTCGAGCGAGGTGGAGTAGTCAAACCCCATCCCCACG
AGCTCCTGCACCGACGCCTCCTGGTCAGTGGAGAGCGGCTGGTCGGAGCTGGTCTTGGAAGGCAC
GGACCCACCAGAGGGAACGGTGGGGGTGCCCGTAGGGGTCCCCGCGGGGGAACCAGCGCCCACAA
TGCCAGCAGCACCGGTGGCAGGCGCAGAGGTGGGCTCGCGAGTGGCGTCCTCGAGCTTGGCGTTG
CCAAACCCGGCAAAGAGCTGCTCCCATTCGTCGTCACCGCCAGCA
Right flanking sequence: Indices 66472 -- 66971
CGGGGCCAGCACCAGCACCAGCACCAAGGCCAGCACCAGCACCAGCTCCGTAGTTGGCAACACCC
GACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTT
CTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACA
TGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCG
AACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGGAACAGCTCCACCGCGTCGTCAAACTTCTC
GCCACGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCT
CGTCGATGCGGGACCGGGCAGCAGCAGCGCCAGCGGCAGCTCCAACGCCAGCAGCAGTGCCAGCA
GCAGCACCACCACCAACACCACCAGCTCCACCAGCTCCACCAACA
Found at i:66477 original size:24 final size:24
Alignment explanation
Indices: 66431--66488 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
66421 CGTCGTCACC
66431 GCCAGCACCAG-A--GCCAGCAGG
1 GCCAGCACCAGCAGGGCCAGCAGG
*
66452 GCCAG-AGCCAGCAGGGCCAGCGGG
1 GCCAGCA-CCAGCAGGGCCAGCAGG
66476 GCCAGCACCAGCA
1 GCCAGCACCAGCA
66489 CCAGCACCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.03
21 9 0.29
22 1 0.03
24 19 0.61
25 1 0.03
ACGTcount: A:0.26, C:0.38, G:0.36, T:0.00
Consensus pattern (24 bp):
GCCAGCACCAGCAGGGCCAGCAGG
Left flanking sequence: Indices 65931 -- 66430
TCCCCGGCCAGCAAGCGTGCTAGTCGCACCACGACTACTCTACTCTTACCACCCTGCTCTTCACC
CTACTCCTCACCACCCTATCCACCACCTACTCTTCACCACTCACTCCACCACCTTCACCCCTCTC
GTCCTATCATTATCTGTATTCAAGCATTATCTACATCCTAAGCATTGTCCAACAAGTAGTTGGTG
GCCTCGGCCACATCCCACTGCTGCTTGCGCAACGCCTCGAGCGAGGTGGAGTAGTCAAACCCCAT
CCCCACGAGCTCCTGCACCGACGCCTCCTGGTCAGTGGAGAGCGGCTGGTCGGAGCTGGTCTTGG
AAGGCACGGACCCACCAGAGGGAACGGTGGGGGTGCCCGTAGGGGTCCCCGCGGGGGAACCAGCG
CCCACAATGCCAGCAGCACCGGTGGCAGGCGCAGAGGTGGGCTCGCGAGTGGCGTCCTCGAGCTT
GGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCATTCGTCGTCACC
Right flanking sequence: Indices 66489 -- 66988
CCAGCACCAAGGCCAGCACCAGCACCAGCTCCGTAGTTGGCAACACCCGACACCGAGCGGGACGG
GCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGT
CGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGC
TCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTG
CGGCAGCTGCGACCGCTGGAACAGCTCCACCGCGTCGTCAAACTTCTCGCCACGGGCCTCCTCCT
CGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCGATGCGGGACCGG
GCAGCAGCAGCGCCAGCGGCAGCTCCAACGCCAGCAGCAGTGCCAGCAGCAGCACCACCACCAAC
ACCACCAGCTCCACCAGCTCCACCAACACCACCCTCGTCACCCTC
Found at i:66488 original size:6 final size:6
Alignment explanation
Indices: 66477--66517 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
66467 GCCAGCGGGG
*
66477 CCAGCA CCAGCA CCAGCA CCAAG-G CCAGCA CCAGCA CCAGC
1 CCAGCA CCAGCA CCAGCA CC-AGCA CCAGCA CCAGCA CCAGC
66518 TCCGTAGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 2 0.06
6 27 0.87
7 2 0.06
ACGTcount: A:0.32, C:0.49, G:0.20, T:0.00
Consensus pattern (6 bp):
CCAGCA
Left flanking sequence: Indices 65977 -- 66476
TACCACCCTGCTCTTCACCCTACTCCTCACCACCCTATCCACCACCTACTCTTCACCACTCACTC
CACCACCTTCACCCCTCTCGTCCTATCATTATCTGTATTCAAGCATTATCTACATCCTAAGCATT
GTCCAACAAGTAGTTGGTGGCCTCGGCCACATCCCACTGCTGCTTGCGCAACGCCTCGAGCGAGG
TGGAGTAGTCAAACCCCATCCCCACGAGCTCCTGCACCGACGCCTCCTGGTCAGTGGAGAGCGGC
TGGTCGGAGCTGGTCTTGGAAGGCACGGACCCACCAGAGGGAACGGTGGGGGTGCCCGTAGGGGT
CCCCGCGGGGGAACCAGCGCCCACAATGCCAGCAGCACCGGTGGCAGGCGCAGAGGTGGGCTCGC
GAGTGGCGTCCTCGAGCTTGGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCATTCGTCGTCACCG
CCAGCACCAGAGCCAGCAGGGCCAGAGCCAGCAGGGCCAGCGGGG
Right flanking sequence: Indices 66518 -- 67017
TCCGTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGT
TCGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAG
TTGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAA
CTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGGAACAGCTCCA
CCGCGTCGTCAAACTTCTCGCCACGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCG
CGGATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCAGCAGCAGCGCCAGCGGCAGCTCCAAC
GCCAGCAGCAGTGCCAGCAGCAGCACCACCACCAACACCACCAGCTCCACCAGCTCCACCAACAC
CACCCTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGA
Found at i:66946 original size:9 final size:9
Alignment explanation
Indices: 66934--66976 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
66924 GCAGCAGCAC
66934 CACCACCAA
1 CACCACCAA
*
66943 CACCACCAG
1 CACCACCAA
* *
66952 CTCCACCAG
1 CACCACCAA
*
66961 CTCCACCAA
1 CACCACCAA
66970 CACCACC
1 CACCACC
66977 CTCGTCACCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.33, C:0.58, G:0.05, T:0.05
Consensus pattern (9 bp):
CACCACCAA
Left flanking sequence: Indices 66434 -- 66933
AGCACCAGAGCCAGCAGGGCCAGAGCCAGCAGGGCCAGCGGGGCCAGCACCAGCACCAGCACCAA
GGCCAGCACCAGCACCAGCTCCGTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCA
GGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGC
CACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGG
CCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGC
GACCGCTGGAACAGCTCCACCGCGTCGTCAAACTTCTCGCCACGGGCCTCCTCCTCGGAGTCCGA
CTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCAGCAGCAG
CGCCAGCGGCAGCTCCAACGCCAGCAGCAGTGCCAGCAGCAGCAC
Right flanking sequence: Indices 66977 -- 67476
CTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCG
ACAGCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCC
ACCCGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGG
GTTGTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGC
CCACCATGCCACCGACCACGCCCTGCGAGTAGTGGAACTCCAGGCCCGACGGCAGCGTGATGGGG
GTCTCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTC
GATCAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCGGCGCCAGCCGCACCGGCAACGGCTC
CTGCAATGGCCATCCCGGCCCCAGAGCCAAACCCGTGCTGGTCGG
Found at i:66951 original size:27 final size:27
Alignment explanation
Indices: 66921--66976 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
66911 AGCAGCAGTG
* *
66921 CCAGCAGCAGCACCACCACCAACACCA
1 CCAGCACCACCACCACCACCAACACCA
* * *
66948 CCAGCTCCACCAGCTCCACCAACACCA
1 CCAGCACCACCACCACCACCAACACCA
66975 CC
1 CC
66977 CTCGTCACCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.55, G:0.09, T:0.04
Consensus pattern (27 bp):
CCAGCACCACCACCACCACCAACACCA
Left flanking sequence: Indices 66421 -- 66920
CGTCGTCACCGCCAGCACCAGAGCCAGCAGGGCCAGAGCCAGCAGGGCCAGCGGGGCCAGCACCA
GCACCAGCACCAAGGCCAGCACCAGCACCAGCTCCGTAGTTGGCAACACCCGACACCGAGCGGGA
CGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGGGGAACTCCT
CGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCGTCCTTGGCC
TGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCC
CTGCGGCAGCTGCGACCGCTGGAACAGCTCCACCGCGTCGTCAAACTTCTCGCCACGGGCCTCCT
CCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCGATGCGGGAC
CGGGCAGCAGCAGCGCCAGCGGCAGCTCCAACGCCAGCAGCAGTG
Right flanking sequence: Indices 66977 -- 67476
CTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCG
ACAGCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCC
ACCCGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGG
GTTGTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGC
CCACCATGCCACCGACCACGCCCTGCGAGTAGTGGAACTCCAGGCCCGACGGCAGCGTGATGGGG
GTCTCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTC
GATCAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCGGCGCCAGCCGCACCGGCAACGGCTC
CTGCAATGGCCATCCCGGCCCCAGAGCCAAACCCGTGCTGGTCGG
Found at i:68782 original size:21 final size:21
Alignment explanation
Indices: 68764--68868 Score: 138
Period size: 21 Copynumber: 5.0 Consensus size: 21
68754 TACAGGCCCC
*
68764 GGCTAGGCTGGTTTTGGCCCT
1 GGCTAGGCTGGTTTTGACCCT
* * *
68785 GGTTAGACTGATTTTGACCCT
1 GGCTAGGCTGGTTTTGACCCT
68806 GGCTAGGCTGGTTTTGACCCT
1 GGCTAGGCTGGTTTTGACCCT
* *
68827 GGCTAGGCTGATTTTGACCTT
1 GGCTAGGCTGGTTTTGACCCT
* *
68848 GGCTAGCCTGGTTTTGTCCCT
1 GGCTAGGCTGGTTTTGACCCT
68869 CCCTGTCACC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 71 1.00
ACGTcount: A:0.10, C:0.23, G:0.30, T:0.36
Consensus pattern (21 bp):
GGCTAGGCTGGTTTTGACCCT
Left flanking sequence: Indices 68264 -- 68763
GATGTCCTTCTTGGCCTGGCGCACCCGTGCCAACTCGGCCTCGGCCCGGGCCCGTTTGTCGCCGA
GCAGCGTGGTCTGCGACGCCAACAGCTTGATCTGGTTCTGGTAGTTGGCCACGTCGGTGGTGGCC
TGCGAGAGCTCCTTCAGGTCCAGTTCCGCGAGGAGATCGCGGTTCTCGGGGAAGTACCCGTGGGT
GGGGGTGCCCAGCGGCGACGACGCGTAGGCGGCGCCAGCGAGCCCGGCAGCGGCACCAGCAGCGA
GCCCGGCGGCCGCCATGGTCCCGTGGCCGGGCGACTGGGCGCCTGGCGAGGCCACGCGGTCGGTT
CTGGGCGGTGGAGGCACTGCTCTGAGCGCGTCGTAGTTGGGCGAAAGGGGGGGTTGGGCCTGGGA
AGCCAGAGGCTGGGAAGCCTGAGACTGAGACTGGGTCAGTGCCTGGTAACCAGGAGGACCCAGAG
GCTGAGAAGTCTGGCTGTGGCCCGTTTGGCTCTGGTACAGGCCCC
Right flanking sequence: Indices 68869 -- 69368
CCCTGTCACCCACCAACGCCTGCCCAAACGACAGCGTGGGCTTAAACCCGCCCGTAAGCGCCGTC
CGCACCCGTGGCAAGTCCCCGGTGCCCGCAGGCGTCAACTCCGCCCGGTCCGGCGCCGGCAGCGC
CTGGTGCGGCAGCGGCAGCCCGAAAATGTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCTGGA
CGGGCGGGTTGGGACCACTCTGGCCCGACGGAGCACCCACCAGCCCCTGACCCGATGGCACCGCA
GGCAACCCCTGGCCCGATGGCACCGCAGGCAACCCCTGGCTCGGCGGCGCCGTGTGGCCCACCTG
GTTCTGGTACTGGTTCAACAGCTGGATCAACAGGTCCGGCACCACGTTGGGCAACTTCTGGCCCG
CCAACCGCTTCTGCACCAAAAACACGGCGATGGCAAACTCCAACCGCGAGAAAACCCCCGTGTTC
TGCACATCAGCAAGGTCCCAGATGGTGGCCAAGTCCTGCTGCGAG
Found at i:68810 original size:42 final size:42
Alignment explanation
Indices: 68764--68868 Score: 156
Period size: 42 Copynumber: 2.5 Consensus size: 42
68754 TACAGGCCCC
* *
68764 GGCTAGGCTGGTTTTGGCCCTGGTTAGACTGATTTTGACCCT
1 GGCTAGGCTGGTTTTGACCCTGGCTAGACTGATTTTGACCCT
* *
68806 GGCTAGGCTGGTTTTGACCCTGGCTAGGCTGATTTTGACCTT
1 GGCTAGGCTGGTTTTGACCCTGGCTAGACTGATTTTGACCCT
* *
68848 GGCTAGCCTGGTTTTGTCCCT
1 GGCTAGGCTGGTTTTGACCCT
68869 CCCTGTCACC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.10, C:0.23, G:0.30, T:0.36
Consensus pattern (42 bp):
GGCTAGGCTGGTTTTGACCCTGGCTAGACTGATTTTGACCCT
Left flanking sequence: Indices 68264 -- 68763
GATGTCCTTCTTGGCCTGGCGCACCCGTGCCAACTCGGCCTCGGCCCGGGCCCGTTTGTCGCCGA
GCAGCGTGGTCTGCGACGCCAACAGCTTGATCTGGTTCTGGTAGTTGGCCACGTCGGTGGTGGCC
TGCGAGAGCTCCTTCAGGTCCAGTTCCGCGAGGAGATCGCGGTTCTCGGGGAAGTACCCGTGGGT
GGGGGTGCCCAGCGGCGACGACGCGTAGGCGGCGCCAGCGAGCCCGGCAGCGGCACCAGCAGCGA
GCCCGGCGGCCGCCATGGTCCCGTGGCCGGGCGACTGGGCGCCTGGCGAGGCCACGCGGTCGGTT
CTGGGCGGTGGAGGCACTGCTCTGAGCGCGTCGTAGTTGGGCGAAAGGGGGGGTTGGGCCTGGGA
AGCCAGAGGCTGGGAAGCCTGAGACTGAGACTGGGTCAGTGCCTGGTAACCAGGAGGACCCAGAG
GCTGAGAAGTCTGGCTGTGGCCCGTTTGGCTCTGGTACAGGCCCC
Right flanking sequence: Indices 68869 -- 69368
CCCTGTCACCCACCAACGCCTGCCCAAACGACAGCGTGGGCTTAAACCCGCCCGTAAGCGCCGTC
CGCACCCGTGGCAAGTCCCCGGTGCCCGCAGGCGTCAACTCCGCCCGGTCCGGCGCCGGCAGCGC
CTGGTGCGGCAGCGGCAGCCCGAAAATGTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCTGGA
CGGGCGGGTTGGGACCACTCTGGCCCGACGGAGCACCCACCAGCCCCTGACCCGATGGCACCGCA
GGCAACCCCTGGCCCGATGGCACCGCAGGCAACCCCTGGCTCGGCGGCGCCGTGTGGCCCACCTG
GTTCTGGTACTGGTTCAACAGCTGGATCAACAGGTCCGGCACCACGTTGGGCAACTTCTGGCCCG
CCAACCGCTTCTGCACCAAAAACACGGCGATGGCAAACTCCAACCGCGAGAAAACCCCCGTGTTC
TGCACATCAGCAAGGTCCCAGATGGTGGCCAAGTCCTGCTGCGAG
Found at i:68999 original size:21 final size:21
Alignment explanation
Indices: 68975--69017 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
68965 GCGTCAACTC
68975 CGCCCGGTCCGGC-GCCGGCAG
1 CGCCCGGTCCGGCAG-CGGCAG
* *
68996 CGCCTGGTGCGGCAGCGGCAG
1 CGCCCGGTCCGGCAGCGGCAG
69017 C
1 C
69018 CCGAAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.42, G:0.44, T:0.07
Consensus pattern (21 bp):
CGCCCGGTCCGGCAGCGGCAG
Left flanking sequence: Indices 68475 -- 68974
GACGACGCGTAGGCGGCGCCAGCGAGCCCGGCAGCGGCACCAGCAGCGAGCCCGGCGGCCGCCAT
GGTCCCGTGGCCGGGCGACTGGGCGCCTGGCGAGGCCACGCGGTCGGTTCTGGGCGGTGGAGGCA
CTGCTCTGAGCGCGTCGTAGTTGGGCGAAAGGGGGGGTTGGGCCTGGGAAGCCAGAGGCTGGGAA
GCCTGAGACTGAGACTGGGTCAGTGCCTGGTAACCAGGAGGACCCAGAGGCTGAGAAGTCTGGCT
GTGGCCCGTTTGGCTCTGGTACAGGCCCCGGCTAGGCTGGTTTTGGCCCTGGTTAGACTGATTTT
GACCCTGGCTAGGCTGGTTTTGACCCTGGCTAGGCTGATTTTGACCTTGGCTAGCCTGGTTTTGT
CCCTCCCTGTCACCCACCAACGCCTGCCCAAACGACAGCGTGGGCTTAAACCCGCCCGTAAGCGC
CGTCCGCACCCGTGGCAAGTCCCCGGTGCCCGCAGGCGTCAACTC
Right flanking sequence: Indices 69018 -- 69517
CCGAAAATGTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCTGGACGGGCGGGTTGGGACCACT
CTGGCCCGACGGAGCACCCACCAGCCCCTGACCCGATGGCACCGCAGGCAACCCCTGGCCCGATG
GCACCGCAGGCAACCCCTGGCTCGGCGGCGCCGTGTGGCCCACCTGGTTCTGGTACTGGTTCAAC
AGCTGGATCAACAGGTCCGGCACCACGTTGGGCAACTTCTGGCCCGCCAACCGCTTCTGCACCAA
AAACACGGCGATGGCAAACTCCAACCGCGAGAAAACCCCCGTGTTCTGCACATCAGCAAGGTCCC
AGATGGTGGCCAAGTCCTGCTGCGAGAGCTTCAGCCCCACAAGGTACGCCACCACCTGGTCCGGC
TGCAACTGGCCCAGCTTCAGCTTGTCCAAGTTGGTGAAGATCTGGTTGAACTGCTGCGCCTGGTG
CGGCGTGGCCACCCACTCCGCCAGCGTGGCGAGCTTGGTGATGGG
Found at i:69167 original size:27 final size:27
Alignment explanation
Indices: 69107--69168 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
69097 CACCCACCAG
*
69107 CCCCTGACCCGATGGCACCGCAGGCAA
1 CCCCTGGCCCGATGGCACCGCAGGCAA
69134 CCCCTGGCCCGATGGCACCGCAGGCAA
1 CCCCTGGCCCGATGGCACCGCAGGCAA
69161 CCCCTGGC
1 CCCCTGGC
69169 TCGGCGGCGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.18, C:0.47, G:0.27, T:0.08
Consensus pattern (27 bp):
CCCCTGGCCCGATGGCACCGCAGGCAA
Left flanking sequence: Indices 68607 -- 69106
GCTCTGAGCGCGTCGTAGTTGGGCGAAAGGGGGGGTTGGGCCTGGGAAGCCAGAGGCTGGGAAGC
CTGAGACTGAGACTGGGTCAGTGCCTGGTAACCAGGAGGACCCAGAGGCTGAGAAGTCTGGCTGT
GGCCCGTTTGGCTCTGGTACAGGCCCCGGCTAGGCTGGTTTTGGCCCTGGTTAGACTGATTTTGA
CCCTGGCTAGGCTGGTTTTGACCCTGGCTAGGCTGATTTTGACCTTGGCTAGCCTGGTTTTGTCC
CTCCCTGTCACCCACCAACGCCTGCCCAAACGACAGCGTGGGCTTAAACCCGCCCGTAAGCGCCG
TCCGCACCCGTGGCAAGTCCCCGGTGCCCGCAGGCGTCAACTCCGCCCGGTCCGGCGCCGGCAGC
GCCTGGTGCGGCAGCGGCAGCCCGAAAATGTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCTG
GACGGGCGGGTTGGGACCACTCTGGCCCGACGGAGCACCCACCAG
Right flanking sequence: Indices 69169 -- 69668
TCGGCGGCGCCGTGTGGCCCACCTGGTTCTGGTACTGGTTCAACAGCTGGATCAACAGGTCCGGC
ACCACGTTGGGCAACTTCTGGCCCGCCAACCGCTTCTGCACCAAAAACACGGCGATGGCAAACTC
CAACCGCGAGAAAACCCCCGTGTTCTGCACATCAGCAAGGTCCCAGATGGTGGCCAAGTCCTGCT
GCGAGAGCTTCAGCCCCACAAGGTACGCCACCACCTGGTCCGGCTGCAACTGGCCCAGCTTCAGC
TTGTCCAAGTTGGTGAAGATCTGGTTGAACTGCTGCGCCTGGTGCGGCGTGGCCACCCACTCCGC
CAGCGTGGCGAGCTTGGTGATGGGCTGCTGCAGCAACAGCCCCTGTCTCAGAAGCCCGGCCCCCT
GCGGGTGGATCACGGTGGTGTTCTGCAGCATCATCAGCGCCGCCAGCACCTGGCGCTGGCCCTGC
CCGTCCCCGACCCCCAGCCAGATCAGCTCGGGCAAAAACGGCGGC
Done.