Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold62
Parameters: 2 7 7 80 10 50 500
Length:  23684

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
298--345
11
4.1
11
76
12
51
6
60
31
2
1.33
1319--1347
13
2.2
13
100
0
58
27
55
10
6
1.59
1341--1379
16
2.5
16
91
4
62
12
38
20
28
1.89
2241--2281
9
4.6
9
81
0
55
2
14
41
41
1.59
4259--4301
9
4.8
9
94
0
77
44
23
13
18
1.86
4272--4310
18
2.2
18
90
0
60
43
30
10
15
1.80
4258--4318
27
2.3
27
82
0
77
42
31
13
13
1.82
5825--5934
24
4.2
24
75
16
103
14
50
27
8
1.71
5825--5921
30
3.4
30
72
16
116
14
50
27
7
1.69
6118--6168
12
4.5
12
76
14
54
0
47
31
21
1.51
6599--6663
33
2.0
32
100
0
121
9
43
33
12
1.74
6788--6834
21
2.2
21
92
0
76
4
53
12
29
1.58
6777--6834
21
2.7
22
84
10
75
3
55
13
27
1.55
6927--6956
15
2.1
14
93
6
51
0
43
50
6
1.28
7106--7132
12
2.2
12
100
0
54
7
25
66
0
1.17
7630--7744
8
14.9
8
77
13
125
38
13
0
47
1.44
8164--8227
27
2.4
27
89
0
101
15
32
35
15
1.90
8175--8242
27
2.5
27
85
0
73
11
35
33
19
1.88
8697--8753
9
6.7
9
76
11
57
24
0
40
35
1.56
8698--8754
21
2.7
22
81
5
64
24
0
40
35
1.56
9136--9162
9
3.0
9
100
0
54
22
55
0
22
1.44
9463--9504
11
3.8
12
84
12
54
35
59
4
0
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9473--9524
16
3.2
16
83
10
61
34
63
1
0
1.06
9474--9525
22
2.3
23
80
9
63
32
65
1
0
1.04
9485--9526
11
3.8
11
78
12
50
30
69
0
0
0.89
9556--9582
12
2.2
12
100
0
54
7
40
11
40
1.69
10295--10321
8
3.4
8
100
0
54
51
22
11
14
1.73
10335--10428
27
3.9
24
84
8
111
10
15
50
23
1.76
10335--10428
12
7.8
12
83
11
111
10
15
50
23
1.76
11001--11045
21
2.1
21
95
0
81
37
6
26
28
1.82
16187--16223
16
2.3
16
100
0
74
24
45
8
21
1.78
16196--16232
16
2.3
16
90
0
56
27
43
5
24
1.76
16367--16421
19
2.8
20
86
5
85
30
34
1
32
1.69
16367--16428
20
3.2
20
86
4
90
32
35
1
30
1.68
16467--16514
9
4.9
10
87
7
64
31
58
0
10
1.32
17480--17545
12
5.5
12
87
0
78
45
27
18
9
1.79
17480--17550
36
2.0
36
88
0
106
45
29
16
8
1.77
18663--18714
19
2.8
19
82
5
63
40
11
32
15
1.83
18720--18754
12
2.8
12
95
4
61
40
17
34
8
1.80
18784--18876
11
8.5
11
75
10
75
44
15
26
13
1.84
18812--18873
21
2.9
22
83
9
76
48
12
24
14
1.79
18793--18863
32
2.2
32
87
5
108
43
15
28
12
1.83
19081--19129
9
5.2
9
95
5
80
12
20
57
10
1.64
19394--19418
10
2.5
10
100
0
50
44
32
24
0
1.54

Tables:   1

The End!