Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold62
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 23684
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:336 original size:11 final size:11
Alignment explanation
Indices: 298--345 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
288 ACGCCGACAC
298 CCGCGCCGCCG
1 CCGCGCCGCCG
* *
309 CCGAGCGCCACCA
1 CC--GCGCCGCCG
322 CCGCGCCGCCG
1 CCGCGCCGCCG
333 CCGCGCTCGCCG
1 CCGCGC-CGCCG
345 C
1 C
346 GGCCACCGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 15 0.50
12 6 0.20
13 9 0.30
ACGTcount: A:0.06, C:0.60, G:0.31, T:0.02
Consensus pattern (11 bp):
CCGCGCCGCCG
Left flanking sequence: Indices 1 -- 297
CCCCATGTCCCGCTCGGAGTTCGACGAGATCGTCGCCCAGGCGGCGCTCCCGCCCCCCAGCGTGA
GCGACGCCGAGGCGCGCTTCCGCAACAGCACCACCCACCCGGCCACCGTCGCCGACGACACCGCC
GCCCTCAAGCGCCACTTCGACCGCTTGAAGTACGTGTACTTGCAACAGGAGACCCGCGACCGGTT
CCTCCGCCACATCACCCAGGATCCCGCCCCCGTGGACGTGGCCGGGGCCGAGGCGCGCGCCGCCG
CCGCCAGCGCCGAGTTGGCCGGGGTCGACGCCGACAC
Right flanking sequence: Indices 346 -- 845
GGCCACCGACGAGTGGCACCGGCACCTCGCGGACACCGCGGCGGTGCTCGACCAGCACCGCGCGC
TCGACGACGAGATGGCGCGGCTCACGGCGTCGTTGCCCCCGGGGCACGCCCAGGTGCTCGCGCTG
GTGCCCCAGACGGCGGGGGCCGGCGCCGGGGACGTAGTGGACGTGGCCCAGCGCGAGCTCGAGCT
CCGGACTGCCGGGTTGAAGCAGGTGATCGACGAGCTCAGCAACACCCAGGTGGCGGTGGACCAGT
TGCACGACGAGCTCGCGCGGTTGGAGCTGGCGATCGACGCCGAGCAGCGGGCGGTGGAGGGGTTG
CGCCGGCAGCTGGCGGACCCCGGGGCCGAGGTGGCGCAGAACAACGCCCGGGCGCGGTGGTACCG
CGACGCCGCCGCGGTGGTGGAGGAGGTGGCGCGGGTGCGGGTGCGCACGGCGGAGGTGCCGCGCG
AGGGCGCGGGCCCCGCGGTGCGGTTGACGGTGGAGGTGCCCGGGC
Found at i:1335 original size:13 final size:13
Alignment explanation
Indices: 1319--1347 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1309 GGCGCATTCA
1319 CCGACACACTCAC
1 CCGACACACTCAC
1332 CCGACACACTCAC
1 CCGACACACTCAC
1345 CCG
1 CCG
1348 TTGACGCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.55, G:0.10, T:0.07
Consensus pattern (13 bp):
CCGACACACTCAC
Left flanking sequence: Indices 819 -- 1318
TGCGGTTGACGGTGGAGGTGCCCGGGCGCGCGGCGCCGCTTGCGGTGCGGTTTGACCCCGAGCAC
AAGCGGGTGGAGGAGGTGGAGCCCGCGCTCGGGGTGGCGGTGCCGGTGGCGGTGGGGTCGCAGTG
GGCGTTGGTGGAGTTTGTGGCGCAGGTGGTGAGCCAGTGGCGCGAGGGGGGCCGTGGAGAAGATG
AGGGGTTGCTGAGAGATTCCTAGATTAGCCACAAGGTGGCTGTATTCCTGGTCGCTACCCCCTGG
CGGTGGCTTTCAACCATGTGCTTGTCTACGAAGTGTTTTGAATATCTCCGGCTTACTTTGTTTGT
TGGTTACTTGTGGCGGTACAGGTAGCCACTGGTTCCACTGCTAAGCGGTGCCGTGGAGAACCTTT
TACAGCTGCTGTCCATGTGATTAATGCTAGACACGCCAGCACTTTCAACGTGCTTAGTCCAGAGT
CTTGTGCCATCTTACCGCTTCACTGAGGTCCACCTGGCGCATTCA
Right flanking sequence: Indices 1348 -- 1847
TTGACGCGTTCACCCGTTGACTCGTTACCCGTGCATGCGTTCACTCGCTGCGACACCCGTCCTTC
GCTGTTCATAGTCCTGAATCGATGGCACTAGTTAATTTCCAGCGTATCTACGGTTCTGTCACGAG
ACATAAAAAAATATTCCAAATTGGGCAAATTAGACGCAGCTGGATACGATGGGCCGATGGGTTTG
CTAAAGTCGCACGGGGGTGAACATTTACGGGCGGAGTTTTGCCGATATCGTCAGTCTTCTCAGCA
TTTGCGGTTAGAATCTTTTCTCAGCAATAGCTATTGTTCTCCACGCTATTATACCAAAAGAGGGT
ATGGCTCTTACAAAACTCGATACCACTCGCAAACCGACCGAATCTGTTACTTCGTCACTTCTGGT
GGCCCACACTTTGTCAAGCTACCTCAACACCACATATTCGCTAAATACGCATTAAAAAGATGATT
GACATACTCAATGCTTGCCAGAACTATCTATTTACTTCTCCCGAG
Found at i:1379 original size:15 final size:16
Alignment explanation
Indices: 1341--1379 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
1331 CCCGACACAC
1341 TCACCCGTTGACGCGT
1 TCACCCGTTGACGCGT
*
1357 TCACCCGTTGACTCGT
1 TCACCCGTTGACGCGT
1373 T-ACCCGT
1 TCACCCGT
1380 GCATGCGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.13, C:0.38, G:0.21, T:0.28
Consensus pattern (16 bp):
TCACCCGTTGACGCGT
Left flanking sequence: Indices 841 -- 1340
CGGGCGCGCGGCGCCGCTTGCGGTGCGGTTTGACCCCGAGCACAAGCGGGTGGAGGAGGTGGAGC
CCGCGCTCGGGGTGGCGGTGCCGGTGGCGGTGGGGTCGCAGTGGGCGTTGGTGGAGTTTGTGGCG
CAGGTGGTGAGCCAGTGGCGCGAGGGGGGCCGTGGAGAAGATGAGGGGTTGCTGAGAGATTCCTA
GATTAGCCACAAGGTGGCTGTATTCCTGGTCGCTACCCCCTGGCGGTGGCTTTCAACCATGTGCT
TGTCTACGAAGTGTTTTGAATATCTCCGGCTTACTTTGTTTGTTGGTTACTTGTGGCGGTACAGG
TAGCCACTGGTTCCACTGCTAAGCGGTGCCGTGGAGAACCTTTTACAGCTGCTGTCCATGTGATT
AATGCTAGACACGCCAGCACTTTCAACGTGCTTAGTCCAGAGTCTTGTGCCATCTTACCGCTTCA
CTGAGGTCCACCTGGCGCATTCACCGACACACTCACCCGACACAC
Right flanking sequence: Indices 1380 -- 1879
GCATGCGTTCACTCGCTGCGACACCCGTCCTTCGCTGTTCATAGTCCTGAATCGATGGCACTAGT
TAATTTCCAGCGTATCTACGGTTCTGTCACGAGACATAAAAAAATATTCCAAATTGGGCAAATTA
GACGCAGCTGGATACGATGGGCCGATGGGTTTGCTAAAGTCGCACGGGGGTGAACATTTACGGGC
GGAGTTTTGCCGATATCGTCAGTCTTCTCAGCATTTGCGGTTAGAATCTTTTCTCAGCAATAGCT
ATTGTTCTCCACGCTATTATACCAAAAGAGGGTATGGCTCTTACAAAACTCGATACCACTCGCAA
ACCGACCGAATCTGTTACTTCGTCACTTCTGGTGGCCCACACTTTGTCAAGCTACCTCAACACCA
CATATTCGCTAAATACGCATTAAAAAGATGATTGACATACTCAATGCTTGCCAGAACTATCTATT
TACTTCTCCCGAGAACAGATCATAATCCATACATCATACAACATC
Found at i:2280 original size:9 final size:9
Alignment explanation
Indices: 2241--2281 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
2231 TTGGACAACA
2241 GGGTTTTGC
1 GGGTTTTGC
**
2250 GACTTTTGC
1 GGGTTTTGC
*
2259 GGGCTTTGC
1 GGGTTTTGC
2268 GGGTTTTGC
1 GGGTTTTGC
2277 GGGTT
1 GGGTT
2282 GGTACCCATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.02, C:0.15, G:0.41, T:0.41
Consensus pattern (9 bp):
GGGTTTTGC
Left flanking sequence: Indices 1741 -- 2240
CCACACTTTGTCAAGCTACCTCAACACCACATATTCGCTAAATACGCATTAAAAAGATGATTGAC
ATACTCAATGCTTGCCAGAACTATCTATTTACTTCTCCCGAGAACAGATCATAATCCATACATCA
TACAACATCATCTATAGAACGCACAGTCTCCTCACTTCTCTGACTACCACTGTATGATGTTGGTT
GATTTTGGAGGTTTGGTGTGGCATAGACTTGCTGAAAACGAGTCGGACGGGACTGGTTGATACAT
TGAACGTGCGGGTATACACCGTAGCCGGGCGTGTTCGGTTGGGGCGAAGGGCTCATAGGTTGAGG
CGAAAAAGAAGGTGCAATGACATATCCATTTGCTGGGTAAGAAAGGGGCCGTGGGTAATATTTGA
CCTGTGTCGGGAACGGCGCGGGTGGGGTTTGTGCACCCACAAACGGATGCTGGACGGACGCCTGA
CCGTGAAATTGCGGATGGTAGGGCGAAGGATGCGCTTGGACAACA
Right flanking sequence: Indices 2282 -- 2781
GGTACCCATTAATATCTGTCCTTGAGGGAGCCTTGACATAATCTGTTCTACAATGGCGTCACAAA
CCTTGTCCAGCACCCTCGGTTGCGTTTTTGCTCGCTTCTGAGCCTCCTCGTGTCGACTAGGAGCC
CGCTTGGTTCTCGTCACCGGGACCTGACTCTCCACGCTCACTTGATCGTCCTGTGGTTGCGAAGA
GACCTTCTGATTAATTCCAGCACTCCTGATAAGGTACCAATGCTTGTCGAAAAGGTCCTCTGTCA
ATTGCCTCTCCTCTGGGCCACCAAGTAATCTGGCTATCTCGTGCGCACAGGGTATACCCATCGTG
TCCCTGAATCTCTGGGTACAGGGCGGGATATTGCGATTTTTGTCCCATTTTCTGAGCAATTCCAT
CGCTTCTTGCACCCTTTGGAGAGCCGCGGAAGCTATCACCCCAGCAACTTTCACGTACAAGTCCT
GCTTGTAAATCTTCAATGGTTTATCAATTTCCCTCCTTTGAAGGC
Found at i:4277 original size:9 final size:9
Alignment explanation
Indices: 4259--4301 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
4249 GCTCAGATTC
4259 AGAACCATT
1 AGAACCATT
*
4268 AGAGCCATT
1 AGAACCATT
4277 AGAACCATT
1 AGAACCATT
4286 AGAACCATT
1 AGAACCATT
4295 AGAACCA
1 AGAACCA
4302 CCAGAACCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.44, C:0.23, G:0.14, T:0.19
Consensus pattern (9 bp):
AGAACCATT
Left flanking sequence: Indices 3759 -- 4258
CGATGAACTGGGAGGGAACTGATTTGCAGAACAGGTGGGTGGTTGTGTTTACCGAAATTTTCGAC
TTGAGAATCGACAATCACCGGCGGTCGTCGCCGAAGCACCCAGACACCATCCGTCCTCGTGGCGT
TCATGGAGAATTTGCACTCACATCCTGTGGGACTTGACTTCTTTTGGCCGCTATCCAGAGACTTT
GCGTACCTGGTGCAAGCATAGCGGACCTTGTTCTTCCCCCCTCTTTCTCTAGCAAGCCCATAGCC
CCTATGCTTTGCCCAATCGTTCACATACTCGAATAATGATTCCTCGTCCGGCATCAGCTTGATTG
GAGGGAGTACGTTGAACTCGTCGACGTTTCTGGGTCTGTCAGAAAGACACTCTCGTGTGGCCTCA
GATGGCTCCAGGGGTGTTGTAGCTGTGTCTTCTACGGGCTCTCTAGCTTCGTCTGATGAGGGCAG
TGCACCAGTGGACTCTACACGGGCAGGAGTCTCTGGCTCAGATTC
Right flanking sequence: Indices 4302 -- 4801
CCAGAACCACCAGAACCCGCTTCTCTCGGGGCCAAGCGAACGAAGCAATCGTCTCGCAAGTCGGC
CACATCATCAGGTCTTAAGCGATCCAGCAGGGCAAAACCCATTTGAAAGCCGTCCTCAAAGTCGC
CAACATGGACGGTGTCGCAGTTGGCTAGTGTGTCAGCGTCTTGGGTGTCATCTTCAAGTACAGCA
GCGAGATTGGCCAGAGTGTTGGTCTCCTCTGGGGACTCAGACATGAGTCTCTCGTTACAGTCGAG
TGGATGTTGACAGAAAAATATTCGACGCACGCGTCTACACGCGTTCGAGACACATTCTTTGCAAA
TAAGGCGATAAGAAATATACTAAAAACAAAGAGAATATTTTGGTTTAAGCTTTGCTTGCAGAAAG
GCAAGTGGTTTGAAGTGAAAGCTGGTGGACCTCTTGGTTACTTTGCTTCAACACTCGCAGATGGG
AGTCCATTTTGGGTAAAAACTCTACAGTGAACAACAGCTTTCTCG
Found at i:4307 original size:18 final size:18
Alignment explanation
Indices: 4272--4310 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
4262 ACCATTAGAG
**
4272 CCATTAGAACCATTAGAA
1 CCATTAGAACCACCAGAA
4290 CCATTAGAACCACCAGAA
1 CCATTAGAACCACCAGAA
4308 CCA
1 CCA
4311 CCAGAACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.31, G:0.10, T:0.15
Consensus pattern (18 bp):
CCATTAGAACCACCAGAA
Left flanking sequence: Indices 3772 -- 4271
GGGAACTGATTTGCAGAACAGGTGGGTGGTTGTGTTTACCGAAATTTTCGACTTGAGAATCGACA
ATCACCGGCGGTCGTCGCCGAAGCACCCAGACACCATCCGTCCTCGTGGCGTTCATGGAGAATTT
GCACTCACATCCTGTGGGACTTGACTTCTTTTGGCCGCTATCCAGAGACTTTGCGTACCTGGTGC
AAGCATAGCGGACCTTGTTCTTCCCCCCTCTTTCTCTAGCAAGCCCATAGCCCCTATGCTTTGCC
CAATCGTTCACATACTCGAATAATGATTCCTCGTCCGGCATCAGCTTGATTGGAGGGAGTACGTT
GAACTCGTCGACGTTTCTGGGTCTGTCAGAAAGACACTCTCGTGTGGCCTCAGATGGCTCCAGGG
GTGTTGTAGCTGTGTCTTCTACGGGCTCTCTAGCTTCGTCTGATGAGGGCAGTGCACCAGTGGAC
TCTACACGGGCAGGAGTCTCTGGCTCAGATTCAGAACCATTAGAG
Right flanking sequence: Indices 4311 -- 4810
CCAGAACCCGCTTCTCTCGGGGCCAAGCGAACGAAGCAATCGTCTCGCAAGTCGGCCACATCATC
AGGTCTTAAGCGATCCAGCAGGGCAAAACCCATTTGAAAGCCGTCCTCAAAGTCGCCAACATGGA
CGGTGTCGCAGTTGGCTAGTGTGTCAGCGTCTTGGGTGTCATCTTCAAGTACAGCAGCGAGATTG
GCCAGAGTGTTGGTCTCCTCTGGGGACTCAGACATGAGTCTCTCGTTACAGTCGAGTGGATGTTG
ACAGAAAAATATTCGACGCACGCGTCTACACGCGTTCGAGACACATTCTTTGCAAATAAGGCGAT
AAGAAATATACTAAAAACAAAGAGAATATTTTGGTTTAAGCTTTGCTTGCAGAAAGGCAAGTGGT
TTGAAGTGAAAGCTGGTGGACCTCTTGGTTACTTTGCTTCAACACTCGCAGATGGGAGTCCATTT
TGGGTAAAAACTCTACAGTGAACAACAGCTTTCTCGCATAAAAGA
Found at i:4316 original size:27 final size:27
Alignment explanation
Indices: 4258--4318 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
4248 GGCTCAGATT
* ** *
4258 CAGAACCATTAGAGCCATTAGAACCAT
1 CAGAACCATTAGAACCACCAGAACCAC
*
4285 TAGAACCATTAGAACCACCAGAACCAC
1 CAGAACCATTAGAACCACCAGAACCAC
4312 CAGAACC
1 CAGAACC
4319 CGCTTCTCTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.31, G:0.13, T:0.13
Consensus pattern (27 bp):
CAGAACCATTAGAACCACCAGAACCAC
Left flanking sequence: Indices 3758 -- 4257
ACGATGAACTGGGAGGGAACTGATTTGCAGAACAGGTGGGTGGTTGTGTTTACCGAAATTTTCGA
CTTGAGAATCGACAATCACCGGCGGTCGTCGCCGAAGCACCCAGACACCATCCGTCCTCGTGGCG
TTCATGGAGAATTTGCACTCACATCCTGTGGGACTTGACTTCTTTTGGCCGCTATCCAGAGACTT
TGCGTACCTGGTGCAAGCATAGCGGACCTTGTTCTTCCCCCCTCTTTCTCTAGCAAGCCCATAGC
CCCTATGCTTTGCCCAATCGTTCACATACTCGAATAATGATTCCTCGTCCGGCATCAGCTTGATT
GGAGGGAGTACGTTGAACTCGTCGACGTTTCTGGGTCTGTCAGAAAGACACTCTCGTGTGGCCTC
AGATGGCTCCAGGGGTGTTGTAGCTGTGTCTTCTACGGGCTCTCTAGCTTCGTCTGATGAGGGCA
GTGCACCAGTGGACTCTACACGGGCAGGAGTCTCTGGCTCAGATT
Right flanking sequence: Indices 4319 -- 4818
CGCTTCTCTCGGGGCCAAGCGAACGAAGCAATCGTCTCGCAAGTCGGCCACATCATCAGGTCTTA
AGCGATCCAGCAGGGCAAAACCCATTTGAAAGCCGTCCTCAAAGTCGCCAACATGGACGGTGTCG
CAGTTGGCTAGTGTGTCAGCGTCTTGGGTGTCATCTTCAAGTACAGCAGCGAGATTGGCCAGAGT
GTTGGTCTCCTCTGGGGACTCAGACATGAGTCTCTCGTTACAGTCGAGTGGATGTTGACAGAAAA
ATATTCGACGCACGCGTCTACACGCGTTCGAGACACATTCTTTGCAAATAAGGCGATAAGAAATA
TACTAAAAACAAAGAGAATATTTTGGTTTAAGCTTTGCTTGCAGAAAGGCAAGTGGTTTGAAGTG
AAAGCTGGTGGACCTCTTGGTTACTTTGCTTCAACACTCGCAGATGGGAGTCCATTTTGGGTAAA
AACTCTACAGTGAACAACAGCTTTCTCGCATAAAAGACAAAAAAT
Found at i:5852 original size:24 final size:24
Alignment explanation
Indices: 5825--5934 Score: 103
Period size: 24 Copynumber: 4.2 Consensus size: 24
5815 CCCGCACGAC
5825 CACCGGCACCGGCACCGCCGTTCG
1 CACCGGCACCGGCACCGCCGTTCG
* *
5849 CACCGGCACCCGCACCGGCACCGCCATTTG
1 CACC-G-----GCACCGGCACCGCCGTTCG
* *
5879 CACGGGCACCCGCACCGCCGTTCG
1 CACCGGCACCGGCACCGCCGTTCG
5903 CACCGGCACCGGCACCGGCCACGTTCG
1 CACCGGCACCGGCACC-G-C-CGTTCG
5930 CACCG
1 CACCG
5935 CCTTGCGCCC
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
24 34 0.49
25 2 0.03
26 1 0.01
27 11 0.16
29 1 0.01
30 20 0.29
ACGTcount: A:0.15, C:0.50, G:0.27, T:0.08
Consensus pattern (24 bp):
CACCGGCACCGGCACCGCCGTTCG
Left flanking sequence: Indices 5325 -- 5824
AGCAACACACCACCCAAAGCTCTTCCGAAAAGAACACCACTTTCTTAAACCACCCTCCTACATCG
TCTCCTACCTTGTCCCCTACCATCTCCTACCTTCTCCTACATGTCTCCTTCTTCTTATCGCACTG
TCTATAAATACCGGTACGCTGTGCACTGCGCTGGCTCCTCTCTAACTGGTCGACGCCGCCACCAC
GTCGTCGGGCGTCATCGCCTCTATCTTCGCAAGCTCGGCCGCGTACTGCGCGCGCTTCGCCGGGT
CCACGTCCCACGTCTTGGCCACGATCAAGTCCTTGATGGTGTCCTTGAGCACCAGCCGCTTGACC
ACGTTCAACAACTTGAGCTCGTTGAACGTCAAGTCGACGATCCCGTTGAGGGTCCCGCTCCCGGG
CTGCGCGGTGATCAGCCGGATGATCCGCGCCACCATGTACCGGTTCTCCACCATCTTCTTCTTGG
TCTGGAGCATGTTGGGCTGGCCAAGGGTGCCGGCACCCGCACGAC
Right flanking sequence: Indices 5935 -- 6434
CCTTGCGCCCCTCCCGCCCCCACCTGCCCCGTGCGCGCGCCAAAGAACGGGTCGATGGGCAACCC
CTCCACCAACGCCTCCACCCGGTAGTCGCGGAAGAACACCGGGTCGTCCTCGCGCCAGTGGGTGG
CCACCACGAGCTGGCGGATGGATGCGGGCCCGCGGCGGTCGTCCTCGATGAACCCGTCGTCGTCC
CCGTCGCCGCCCGCGTCGTCGTCGTCGTCGTCGCCGTCGGTGTCGATGTCCTCGCCGTCACTCCC
CTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCGTAGTCGACCCCGGCGAGCTCCGCGAGCGGGC
GCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTAGGGCGGGCGCCGG
TTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCCACCATCGCCGCCACGGTGGCCGCCGA
CGCCTCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGCGGGGGC
Found at i:5864 original size:30 final size:30
Alignment explanation
Indices: 5825--5921 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 30
5815 CCCGCACGAC
5825 CACCGGCACCGGCACCGCCGTTCGCACCGG
1 CACCGGCACCGGCACCGCCGTTCGCACCGG
* * *
5855 CACCCGCACCGGCACCGCCATTTGCA-C-G
1 CACCGGCACCGGCACCGCCGTTCGCACCGG
*
5883 ----GGCACCCGCACCGCCGTTCGCACCGG
1 CACCGGCACCGGCACCGCCGTTCGCACCGG
5909 CACCGGCACCGGC
1 CACCGGCACCGGC
5922 CACGTTCGCA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
24 18 0.34
25 1 0.02
26 1 0.02
28 1 0.02
29 1 0.02
30 31 0.58
ACGTcount: A:0.14, C:0.51, G:0.28, T:0.07
Consensus pattern (30 bp):
CACCGGCACCGGCACCGCCGTTCGCACCGG
Left flanking sequence: Indices 5325 -- 5824
AGCAACACACCACCCAAAGCTCTTCCGAAAAGAACACCACTTTCTTAAACCACCCTCCTACATCG
TCTCCTACCTTGTCCCCTACCATCTCCTACCTTCTCCTACATGTCTCCTTCTTCTTATCGCACTG
TCTATAAATACCGGTACGCTGTGCACTGCGCTGGCTCCTCTCTAACTGGTCGACGCCGCCACCAC
GTCGTCGGGCGTCATCGCCTCTATCTTCGCAAGCTCGGCCGCGTACTGCGCGCGCTTCGCCGGGT
CCACGTCCCACGTCTTGGCCACGATCAAGTCCTTGATGGTGTCCTTGAGCACCAGCCGCTTGACC
ACGTTCAACAACTTGAGCTCGTTGAACGTCAAGTCGACGATCCCGTTGAGGGTCCCGCTCCCGGG
CTGCGCGGTGATCAGCCGGATGATCCGCGCCACCATGTACCGGTTCTCCACCATCTTCTTCTTGG
TCTGGAGCATGTTGGGCTGGCCAAGGGTGCCGGCACCCGCACGAC
Right flanking sequence: Indices 5922 -- 6421
CACGTTCGCACCGCCTTGCGCCCCTCCCGCCCCCACCTGCCCCGTGCGCGCGCCAAAGAACGGGT
CGATGGGCAACCCCTCCACCAACGCCTCCACCCGGTAGTCGCGGAAGAACACCGGGTCGTCCTCG
CGCCAGTGGGTGGCCACCACGAGCTGGCGGATGGATGCGGGCCCGCGGCGGTCGTCCTCGATGAA
CCCGTCGTCGTCCCCGTCGCCGCCCGCGTCGTCGTCGTCGTCGTCGCCGTCGGTGTCGATGTCCT
CGCCGTCACTCCCCTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCGTAGTCGACCCCGGCGAGC
TCCGCGAGCGGGCGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTA
GGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCCACCATCGCCGCCA
CGGTGGCCGCCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGG
Found at i:6167 original size:12 final size:12
Alignment explanation
Indices: 6118--6168 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
6108 CTCGATGAAC
*
6118 CCGTCGTCGTCC
1 CCGTCGTCGTCG
*
6130 CCGTCGCCG-C-
1 CCGTCGTCGTCG
6140 CCG-CGTCGTCG
1 CCGTCGTCGTCG
*
6151 TCGTCGTCGTCG
1 CCGTCGTCGTCG
6163 CCGTCG
1 CCGTCG
6169 GTGTCGATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 4 0.12
10 4 0.12
11 3 0.09
12 21 0.66
ACGTcount: A:0.00, C:0.47, G:0.31, T:0.22
Consensus pattern (12 bp):
CCGTCGTCGTCG
Left flanking sequence: Indices 5618 -- 6117
TGATGGTGTCCTTGAGCACCAGCCGCTTGACCACGTTCAACAACTTGAGCTCGTTGAACGTCAAG
TCGACGATCCCGTTGAGGGTCCCGCTCCCGGGCTGCGCGGTGATCAGCCGGATGATCCGCGCCAC
CATGTACCGGTTCTCCACCATCTTCTTCTTGGTCTGGAGCATGTTGGGCTGGCCAAGGGTGCCGG
CACCCGCACGACCACCGGCACCGGCACCGCCGTTCGCACCGGCACCCGCACCGGCACCGCCATTT
GCACGGGCACCCGCACCGCCGTTCGCACCGGCACCGGCACCGGCCACGTTCGCACCGCCTTGCGC
CCCTCCCGCCCCCACCTGCCCCGTGCGCGCGCCAAAGAACGGGTCGATGGGCAACCCCTCCACCA
ACGCCTCCACCCGGTAGTCGCGGAAGAACACCGGGTCGTCCTCGCGCCAGTGGGTGGCCACCACG
AGCTGGCGGATGGATGCGGGCCCGCGGCGGTCGTCCTCGATGAAC
Right flanking sequence: Indices 6169 -- 6668
GTGTCGATGTCCTCGCCGTCACTCCCCTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCGTAGTC
GACCCCGGCGAGCTCCGCGAGCGGGCGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACC
AGGTGCCGGCGTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCC
ACCATCGCCGCCACGGTGGCCGCCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGC
GGGGGCGGGCGGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCCATCGGGGGCGACGCCGAGGTGC
CGCCGCGGAGCACCTCCTCCACCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGGCGGGGGCCACC
ACCATGTGCAGCAGCTCGAAGAACGGGAGGAAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCCTG
CGGCTGCNAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTG
Found at i:6641 original size:33 final size:32
Alignment explanation
Indices: 6599--6663 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 32
6589 AAGAACCGCG
6599 AGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGC
1 AGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGC
6631 NAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGC
1 -AGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGC
6664 TTTTGGACGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.09, C:0.43, G:0.34, T:0.12
Consensus pattern (32 bp):
AGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGC
Left flanking sequence: Indices 6099 -- 6598
GCGGTCGTCCTCGATGAACCCGTCGTCGTCCCCGTCGCCGCCCGCGTCGTCGTCGTCGTCGTCGC
CGTCGGTGTCGATGTCCTCGCCGTCACTCCCCTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCG
TAGTCGACCCCGGCGAGCTCCGCGAGCGGGCGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAG
GCACCAGGTGCCGGCGTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACC
GCGCCACCATCGCCGCCACGGTGGCCGCCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGGGG
TCGGCGGGGGCGGGCGGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCCATCGGGGGCGACGCCGA
GGTGCCGCCGCGGAGCACCTCCTCCACCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGGCGGGGG
CCACCACCATGTGCAGCAGCTCGAAGAACGGGAGGAAGAACCGCG
Right flanking sequence: Indices 6664 -- 7163
TTTTGGACGTCGGGCGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTT
CTGCGACGCCTCCTTGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCGCGCGCT
TCTTCTCCTCCCACCCGCGCTTCTTTTCCTCCCACTCGCGCCGGCGCTCGGCCTTTTCGGCGTCG
GCGGCGCGCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGCGCGCTCCTCCTCCTCGCGCTGCTT
CTTGGCCGCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCTCCTTGCGCTGGCGCTCGCGCTCGC
GCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGGCGGTTGGCCTCGGCCTGGAGCTTG
GCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTCGGGCGGGGCGTCGGGGGAGGCCGC
GGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGAGGTGTCGGGGGT
Found at i:6801 original size:21 final size:21
Alignment explanation
Indices: 6788--6834 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
6778 TCCTCCGCCG
6788 CGCGCTTCTTCTCCTCCCACC
1 CGCGCTTCTTCTCCTCCCACC
* *
6809 CGCGCTTCTTTTCCTCCCACT
1 CGCGCTTCTTCTCCTCCCACC
6830 CGCGC
1 CGCGC
6835 CGGCGCTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.04, C:0.53, G:0.13, T:0.30
Consensus pattern (21 bp):
CGCGCTTCTTCTCCTCCCACC
Left flanking sequence: Indices 6288 -- 6787
CGCCAGGCACCAGGTGCCGGCGTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGG
GCAACCGCGCCACCATCGCCGCCACGGTGGCCGCCGACGCCTCGTTCATCGCCGCCGCCACCTCC
ACGGGGTCGGCGGGGGCGGGCGGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCCATCGGGGGCGA
CGCCGAGGTGCCGCCGCGGAGCACCTCCTCCACCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGG
CGGGGGCCACCACCATGTGCAGCAGCTCGAAGAACGGGAGGAAGAACCGCGAGTAGCCGTCCGCC
AGCGCCGCCTGCGGCTGCNAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTGGACGTCGGG
CGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTGCGACGCCTCCT
TGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCG
Right flanking sequence: Indices 6835 -- 7334
CGGCGCTCGGCCTTTTCGGCGTCGGCGGCGCGCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGC
GCGCTCCTCCTCCTCGCGCTGCTTCTTGGCCGCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCT
CCTTGCGCTGGCGCTCGCGCTCGCGCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGG
CGGTTGGCCTCGGCCTGGAGCTTGGCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTC
GGGCGGGGCGTCGGGGGAGGCCGCGGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGAGGTGTCGG
GGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGGGCCGGGTGGGCCGGGGGAGGGTGGGAC
GAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGGTATCTTTGCCGGGGGAGCGTCGTCGGG
CTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTGCTCGCGG
Found at i:6811 original size:23 final size:22
Alignment explanation
Indices: 6777--6834 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
6767 CGCGCTTGCG
*
6777 CTCCT-CCGCCGCGCGCTTCTT
1 CTCCTCCCACCGCGCGCTTCTT
6798 CTCCTCCCACC-CGCGCTTCTT
1 CTCCTCCCACCGCGCGCTTCTT
*
6819 TTCCTCCCACTCGCGC
1 CTCCTCCCAC-CGCGC
6835 CGGCGCTCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 24 0.75
22 5 0.16
23 3 0.09
ACGTcount: A:0.03, C:0.55, G:0.14, T:0.28
Consensus pattern (22 bp):
CTCCTCCCACCGCGCGCTTCTT
Left flanking sequence: Indices 6277 -- 6776
TGCTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAG
GAACTTGAGGGGCAACCGCGCCACCATCGCCGCCACGGTGGCCGCCGACGCCTCGTTCATCGCCG
CCGCCACCTCCACGGGGTCGGCGGGGGCGGGCGGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCC
ATCGGGGGCGACGCCGAGGTGCCGCCGCGGAGCACCTCCTCCACCGCGGCGGCGGCGCCGGGGGC
CGGGGCCGGGGCGGGGGCCACCACCATGTGCAGCAGCTCGAAGAACGGGAGGAAGAACCGCGAGT
AGCCGTCCGCCAGCGCCGCCTGCGGCTGCNAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTT
TGGACGTCGGGCGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTG
CGACGCCTCCTTGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCG
Right flanking sequence: Indices 6835 -- 7334
CGGCGCTCGGCCTTTTCGGCGTCGGCGGCGCGCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGC
GCGCTCCTCCTCCTCGCGCTGCTTCTTGGCCGCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCT
CCTTGCGCTGGCGCTCGCGCTCGCGCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGG
CGGTTGGCCTCGGCCTGGAGCTTGGCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTC
GGGCGGGGCGTCGGGGGAGGCCGCGGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGAGGTGTCGG
GGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGGGCCGGGTGGGCCGGGGGAGGGTGGGAC
GAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGGTATCTTTGCCGGGGGAGCGTCGTCGGG
CTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTGCTCGCGG
Found at i:6947 original size:15 final size:14
Alignment explanation
Indices: 6927--6956 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
6917 GCTGCTTCTT
6927 GGCCGCGCGCTCGGC
1 GGCCGCGCGCT-GGC
6942 GGCCGCGCGCTGGC
1 GGCCGCGCGCTGGC
6956 G
1 G
6957 CTCCTCCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.00, C:0.43, G:0.50, T:0.07
Consensus pattern (14 bp):
GGCCGCGCGCTGGC
Left flanking sequence: Indices 6427 -- 6926
GCGGGGGCGGGCGGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCCATCGGGGGCGACGCCGAGGT
GCCGCCGCGGAGCACCTCCTCCACCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGGCGGGGGCCA
CCACCATGTGCAGCAGCTCGAAGAACGGGAGGAAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCC
TGCGGCTGCNAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTGGACGTCGGGCGCCGGCTT
CGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTGCGACGCCTCCTTGCGGCGGC
GCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCGCGCGCTTCTTCTCCTCCCACCCGCGCTTC
TTTTCCTCCCACTCGCGCCGGCGCTCGGCCTTTTCGGCGTCGGCGGCGCGCTTCTTCTCCTCCTG
GAGGCGCCGGCGCTGGGCGCGCTCCTCCTCCTCGCGCTGCTTCTT
Right flanking sequence: Indices 6957 -- 7456
CTCCTCCTCCTTGCGCTGGCGCTCGCGCTCGCGCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGC
GCGCCTGGCGGTTGGCCTCGGCCTGGAGCTTGGCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCG
GCCCCGTCGGGCGGGGCGTCGGGGGAGGCCGCGGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGA
GGTGTCGGGGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGGGCCGGGTGGGCCGGGGGAG
GGTGGGACGAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGGTATCTTTGCCGGGGGAGCG
TCGTCGGGCTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTGCTCGCGGAGGGTTTTGGTT
GAGCGCGCGACGCGTCTGGTTGGCGCGGGCTCGCAACGGGATGCAGAAGTGAGCACAGTGAATAG
TGCAGGAGCACAGAAGCACAGTAGAAGCACGATAGGAGCACAGTA
Found at i:7121 original size:12 final size:12
Alignment explanation
Indices: 7106--7132 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7096 GGCGGGGCGT
7106 CGGGGGAGGCCG
1 CGGGGGAGGCCG
7118 CGGGGGAGGCCG
1 CGGGGGAGGCCG
7130 CGG
1 CGG
7133 TCTCGGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.67, T:0.00
Consensus pattern (12 bp):
CGGGGGAGGCCG
Left flanking sequence: Indices 6606 -- 7105
GTCCGCCAGCGCCGCCTGCGGCTGCNAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTGGA
CGTCGGGCGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTGCGAC
GCCTCCTTGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCGCGCGCTTCTTCTC
CTCCCACCCGCGCTTCTTTTCCTCCCACTCGCGCCGGCGCTCGGCCTTTTCGGCGTCGGCGGCGC
GCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGCGCGCTCCTCCTCCTCGCGCTGCTTCTTGGCC
GCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCTCCTTGCGCTGGCGCTCGCGCTCGCGCTCCTC
CTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGGCGGTTGGCCTCGGCCTGGAGCTTGGCGAGCT
GTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTCGGGCGGGGCGT
Right flanking sequence: Indices 7133 -- 7632
TCTCGGGGGTGGTGGAGGAGGTGTCGGGGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGG
GCCGGGTGGGCCGGGGGAGGGTGGGACGAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGG
TATCTTTGCCGGGGGAGCGTCGTCGGGCTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTG
CTCGCGGAGGGTTTTGGTTGAGCGCGCGACGCGTCTGGTTGGCGCGGGCTCGCAACGGGATGCAG
AAGTGAGCACAGTGAATAGTGCAGGAGCACAGAAGCACAGTAGAAGCACGATAGGAGCACAGTAA
CAACACAGCCCAAGCGAGTGGCAGCACCTTAGCAGCACGGTGGCAGCACTATAGTAGCAAGATGA
TAAGACAATACCGCTAAGACACAGACGAATTATCAAACTACGGGGTACACACAAAAACCTACGTT
AAATCATTTTTTAAGAAATTCTGACAATTTTCATTATTTATTTTC
Found at i:7643 original size:8 final size:8
Alignment explanation
Indices: 7630--7744 Score: 125
Period size: 8 Copynumber: 14.9 Consensus size: 8
7620 ATTATTTATT
7630 TTCAATTA
1 TTCAATTA
7638 TTCAA-TA
1 TTCAATTA
*
7645 TT-TATTA
1 TTCAATTA
7652 TTCAATTA
1 TTCAATTA
7660 TTCAATTA
1 TTCAATTA
7668 TTCAATTA
1 TTCAATTA
7676 TTCAATTA
1 TTCAATTA
*
7684 TTCAAATA
1 TTCAATTA
7692 TTCAATTA
1 TTCAATTA
*
7700 TACAA-TA
1 TTCAATTA
*
7707 CTCAATTCA
1 TTCAATT-A
7716 TTCAA-TA
1 TTCAATTA
*
7723 TTTAATTCA
1 TTCAATT-A
7732 TTC-A-TA
1 TTCAATTA
7738 TTCAATT
1 TTCAATT
7745 TATTAATACT
Statistics
Matches: 89, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
6 5 0.06
7 20 0.22
8 56 0.63
9 8 0.09
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (8 bp):
TTCAATTA
Left flanking sequence: Indices 7130 -- 7629
CGGTCTCGGGGGTGGTGGAGGAGGTGTCGGGGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGAC
GGGGCCGGGTGGGCCGGGGGAGGGTGGGACGAAGGCACTGGATGGACCAGTGGGTCGTCGCACCG
GGGTATCTTTGCCGGGGGAGCGTCGTCGGGCTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAG
GTGCTCGCGGAGGGTTTTGGTTGAGCGCGCGACGCGTCTGGTTGGCGCGGGCTCGCAACGGGATG
CAGAAGTGAGCACAGTGAATAGTGCAGGAGCACAGAAGCACAGTAGAAGCACGATAGGAGCACAG
TAACAACACAGCCCAAGCGAGTGGCAGCACCTTAGCAGCACGGTGGCAGCACTATAGTAGCAAGA
TGATAAGACAATACCGCTAAGACACAGACGAATTATCAAACTACGGGGTACACACAAAAACCTAC
GTTAAATCATTTTTTAAGAAATTCTGACAATTTTCATTATTTATT
Right flanking sequence: Indices 7745 -- 8244
TATTAATACTCTTCATTCAATCCGCCTCTCTTCAGTCAAGCGCCAACCGGTAGGCGTCGGAGTTG
GCGGCGAGCTCGGCCACCCACCCCACAAGCATATCTCTCATCGCATGGACGTCCCGCTTGGTGAT
CGAGCTCGAGTCCACGCGGGCGTAGAGCGCCCGGAACCGGTCGATCTCGGCGGGCGTAAGCACGG
GGGCCATGCTGGAAAACACCAGCGACGCCGTGAGCTTGAACAGGTCGTGGCGGAGCGCCCAGTGG
TAGCAGATTGCCTCGGGGTCCACAGGGCCCTCGAGCTCGTTGTACCTGGCGTAGTGGGTCAACTG
GCGGCCCAACTCGGGGGACAAGAAGGGGCAGTTGTGGGTTTGGGAAGGTGTTTGGGACCCGGAGG
TGGCTGTAGCGGGTTGGTGGGCCCAAGTAGACCCGGAACTTCGGGCCACTTGGCTGGACCCAGAG
CTTCGGGCCACTTGGCTGGACCGGGAGCCTCTGACCCCTTGGCCG
Found at i:8227 original size:27 final size:27
Alignment explanation
Indices: 8164--8227 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
8154 GGCCCAAGTA
*
8164 GACCCGGAACTTCGGGCCACTTGGCTG
1 GACCCGGAGCTTCGGGCCACTTGGCTG
*
8191 GACCCAGAGCTTCGGGCCACTTGGCTG
1 GACCCGGAGCTTCGGGCCACTTGGCTG
*
8218 GACCGGGAGC
1 GACCCGGAGC
8228 CTCTGACCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.16, C:0.33, G:0.36, T:0.16
Consensus pattern (27 bp):
GACCCGGAGCTTCGGGCCACTTGGCTG
Left flanking sequence: Indices 7664 -- 8163
ATTATTCAATTATTCAATTATTCAAATATTCAATTATACAATACTCAATTCATTCAATATTTAAT
TCATTCATATTCAATTTATTAATACTCTTCATTCAATCCGCCTCTCTTCAGTCAAGCGCCAACCG
GTAGGCGTCGGAGTTGGCGGCGAGCTCGGCCACCCACCCCACAAGCATATCTCTCATCGCATGGA
CGTCCCGCTTGGTGATCGAGCTCGAGTCCACGCGGGCGTAGAGCGCCCGGAACCGGTCGATCTCG
GCGGGCGTAAGCACGGGGGCCATGCTGGAAAACACCAGCGACGCCGTGAGCTTGAACAGGTCGTG
GCGGAGCGCCCAGTGGTAGCAGATTGCCTCGGGGTCCACAGGGCCCTCGAGCTCGTTGTACCTGG
CGTAGTGGGTCAACTGGCGGCCCAACTCGGGGGACAAGAAGGGGCAGTTGTGGGTTTGGGAAGGT
GTTTGGGACCCGGAGGTGGCTGTAGCGGGTTGGTGGGCCCAAGTA
Right flanking sequence: Indices 8228 -- 8727
CTCTGACCCCTTGGCCGGTTCCCCGAGACAGCGAGCTCGAAGCGGTTCTCTGGTAGCGAAGGGTG
TCACGGCGCACCCGGGCGGTGTACTCAGCGATAGCCTCTGGTGATTCTCTCAGCTCGGGCGGCAA
CAGCTGCCACACCGCCTGCCTGAGCTCGAGGCGGTCGCGGACGGCCAAGAGCTCGTGGTTCTCGC
GCTGGAGAGCCAGGTCGCTGGCGCGGAGCTCGGCCAACTGGCGGAGGTGGTCGTCCGTCTGGCGT
CGGCTGGCGTCTCGGGCGGCCTCCACCACCGCCACGAGCACCTGCTGGTTGGGGAGGACGACGTT
GGTTTCCTCGCCGAGGAGGAGGGCAAAGAGCTCGCTGAGCTGGTCCTGGAGCCGGGCGACTTGGT
CCGGGGTGAGACAGAGGTCGGATGGAGCAGAGAGAGGGTCTGCAAAGTTGACCTGGGGCATGGTA
GTCGAGGGAGTGGGGGTAGTAATGGTAGTAGTAGTAGTAGTGGTG
Found at i:8240 original size:27 final size:27
Alignment explanation
Indices: 8175--8242 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
8165 ACCCGGAACT
* *
8175 TCGGGCCACTTGGCTGGACCCAGAGCT
1 TCGGACCACTTGGCTGGACCCAGAGCC
* **
8202 TCGGGCCACTTGGCTGGACCGGGAGCC
1 TCGGACCACTTGGCTGGACCCAGAGCC
* *
8229 TCTGACCCCTTGGC
1 TCGGACCACTTGGC
8243 CGGTTCCCCG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.12, C:0.35, G:0.34, T:0.19
Consensus pattern (27 bp):
TCGGACCACTTGGCTGGACCCAGAGCC
Left flanking sequence: Indices 7675 -- 8174
ATTCAATTATTCAAATATTCAATTATACAATACTCAATTCATTCAATATTTAATTCATTCATATT
CAATTTATTAATACTCTTCATTCAATCCGCCTCTCTTCAGTCAAGCGCCAACCGGTAGGCGTCGG
AGTTGGCGGCGAGCTCGGCCACCCACCCCACAAGCATATCTCTCATCGCATGGACGTCCCGCTTG
GTGATCGAGCTCGAGTCCACGCGGGCGTAGAGCGCCCGGAACCGGTCGATCTCGGCGGGCGTAAG
CACGGGGGCCATGCTGGAAAACACCAGCGACGCCGTGAGCTTGAACAGGTCGTGGCGGAGCGCCC
AGTGGTAGCAGATTGCCTCGGGGTCCACAGGGCCCTCGAGCTCGTTGTACCTGGCGTAGTGGGTC
AACTGGCGGCCCAACTCGGGGGACAAGAAGGGGCAGTTGTGGGTTTGGGAAGGTGTTTGGGACCC
GGAGGTGGCTGTAGCGGGTTGGTGGGCCCAAGTAGACCCGGAACT
Right flanking sequence: Indices 8243 -- 8742
CGGTTCCCCGAGACAGCGAGCTCGAAGCGGTTCTCTGGTAGCGAAGGGTGTCACGGCGCACCCGG
GCGGTGTACTCAGCGATAGCCTCTGGTGATTCTCTCAGCTCGGGCGGCAACAGCTGCCACACCGC
CTGCCTGAGCTCGAGGCGGTCGCGGACGGCCAAGAGCTCGTGGTTCTCGCGCTGGAGAGCCAGGT
CGCTGGCGCGGAGCTCGGCCAACTGGCGGAGGTGGTCGTCCGTCTGGCGTCGGCTGGCGTCTCGG
GCGGCCTCCACCACCGCCACGAGCACCTGCTGGTTGGGGAGGACGACGTTGGTTTCCTCGCCGAG
GAGGAGGGCAAAGAGCTCGCTGAGCTGGTCCTGGAGCCGGGCGACTTGGTCCGGGGTGAGACAGA
GGTCGGATGGAGCAGAGAGAGGGTCTGCAAAGTTGACCTGGGGCATGGTAGTCGAGGGAGTGGGG
GTAGTAATGGTAGTAGTAGTAGTAGTGGTGGTAGTGATAGTGGTA
Found at i:8711 original size:9 final size:9
Alignment explanation
Indices: 8697--8753 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
8687 AGGGAGTGGG
*
8697 GGTAGTAAT
1 GGTAGTAGT
8706 GGTAGTAGT
1 GGTAGTAGT
*
8715 AGTAGTAGT
1 GGTAGTAGT
*
8724 GGTGGTAGT
1 GGTAGTAGT
8733 -G-A-TAGT
1 GGTAGTAGT
*
8739 GGTAGTATT
1 GGTAGTAGT
8748 GGTAGT
1 GGTAGT
8754 GGAGGGAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 4 0.10
7 1 0.03
8 2 0.05
9 32 0.82
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (9 bp):
GGTAGTAGT
Left flanking sequence: Indices 8197 -- 8696
GAGCTTCGGGCCACTTGGCTGGACCGGGAGCCTCTGACCCCTTGGCCGGTTCCCCGAGACAGCGA
GCTCGAAGCGGTTCTCTGGTAGCGAAGGGTGTCACGGCGCACCCGGGCGGTGTACTCAGCGATAG
CCTCTGGTGATTCTCTCAGCTCGGGCGGCAACAGCTGCCACACCGCCTGCCTGAGCTCGAGGCGG
TCGCGGACGGCCAAGAGCTCGTGGTTCTCGCGCTGGAGAGCCAGGTCGCTGGCGCGGAGCTCGGC
CAACTGGCGGAGGTGGTCGTCCGTCTGGCGTCGGCTGGCGTCTCGGGCGGCCTCCACCACCGCCA
CGAGCACCTGCTGGTTGGGGAGGACGACGTTGGTTTCCTCGCCGAGGAGGAGGGCAAAGAGCTCG
CTGAGCTGGTCCTGGAGCCGGGCGACTTGGTCCGGGGTGAGACAGAGGTCGGATGGAGCAGAGAG
AGGGTCTGCAAAGTTGACCTGGGGCATGGTAGTCGAGGGAGTGGG
Right flanking sequence: Indices 8754 -- 9253
GGAGGGAATGGTGGTGGTAGTAGTGGTTTTGGTGGTAGTATTAGTATTAGTAGAGGTAGTGGTTG
TGTTGGTTGTGTACTTGTGGTTTACATGACGGTCTACAACGGTCTTAGTGGTTAACAAGAGCGTG
GAAGAAAGAGAAGAAGGTAAGGTAGAAAAGCAGGAAGAGAGAAGCAGGGAAGACACAAAAACAGG
GTTGGGAGAACAGTGTTACGGAAAGAATAGTACACTGAAAAGGTCCTTCTGTGAGTTTATTCGGT
AGGACTGGGATGGGTAGGCTATTTGTAGCGCATAGTATCTACAACAACCAAGTATCCTCCAGAAG
TGCACACTTGGGACCTTTAGTGGAGCCCAGCGAAGTAGCATCTACCACAACACTGCTCCAACTCT
CCCAACTCTCCCAACTCTCACTAAGCCATCACCACACCGCTTCCCTCACCTTCACTTAGCCTTGG
ACCATGCCACCACCCACATTAGCCATGTCTCCTGCCTAAACCACC
Found at i:8738 original size:21 final size:22
Alignment explanation
Indices: 8698--8754 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
8688 GGGAGTGGGG
*
8698 GTAGTAATGGTAGT-AGTAGTA
1 GTAGTAGTGGTAGTGAGTAGTA
* *
8719 GTAGTGGTGGTAGTGA-TAGTG
1 GTAGTAGTGGTAGTGAGTAGTA
*
8740 GTAGTATTGGTAGTG
1 GTAGTAGTGGTAGTG
8755 GAGGGAATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (22 bp):
GTAGTAGTGGTAGTGAGTAGTA
Left flanking sequence: Indices 8198 -- 8697
AGCTTCGGGCCACTTGGCTGGACCGGGAGCCTCTGACCCCTTGGCCGGTTCCCCGAGACAGCGAG
CTCGAAGCGGTTCTCTGGTAGCGAAGGGTGTCACGGCGCACCCGGGCGGTGTACTCAGCGATAGC
CTCTGGTGATTCTCTCAGCTCGGGCGGCAACAGCTGCCACACCGCCTGCCTGAGCTCGAGGCGGT
CGCGGACGGCCAAGAGCTCGTGGTTCTCGCGCTGGAGAGCCAGGTCGCTGGCGCGGAGCTCGGCC
AACTGGCGGAGGTGGTCGTCCGTCTGGCGTCGGCTGGCGTCTCGGGCGGCCTCCACCACCGCCAC
GAGCACCTGCTGGTTGGGGAGGACGACGTTGGTTTCCTCGCCGAGGAGGAGGGCAAAGAGCTCGC
TGAGCTGGTCCTGGAGCCGGGCGACTTGGTCCGGGGTGAGACAGAGGTCGGATGGAGCAGAGAGA
GGGTCTGCAAAGTTGACCTGGGGCATGGTAGTCGAGGGAGTGGGG
Right flanking sequence: Indices 8755 -- 9254
GAGGGAATGGTGGTGGTAGTAGTGGTTTTGGTGGTAGTATTAGTATTAGTAGAGGTAGTGGTTGT
GTTGGTTGTGTACTTGTGGTTTACATGACGGTCTACAACGGTCTTAGTGGTTAACAAGAGCGTGG
AAGAAAGAGAAGAAGGTAAGGTAGAAAAGCAGGAAGAGAGAAGCAGGGAAGACACAAAAACAGGG
TTGGGAGAACAGTGTTACGGAAAGAATAGTACACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTA
GGACTGGGATGGGTAGGCTATTTGTAGCGCATAGTATCTACAACAACCAAGTATCCTCCAGAAGT
GCACACTTGGGACCTTTAGTGGAGCCCAGCGAAGTAGCATCTACCACAACACTGCTCCAACTCTC
CCAACTCTCCCAACTCTCACTAAGCCATCACCACACCGCTTCCCTCACCTTCACTTAGCCTTGGA
CCATGCCACCACCCACATTAGCCATGTCTCCTGCCTAAACCACCG
Found at i:9150 original size:9 final size:9
Alignment explanation
Indices: 9136--9162 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
9126 CAACACTGCT
9136 CCAACTCTC
1 CCAACTCTC
9145 CCAACTCTC
1 CCAACTCTC
9154 CCAACTCTC
1 CCAACTCTC
9163 ACTAAGCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.56, G:0.00, T:0.22
Consensus pattern (9 bp):
CCAACTCTC
Left flanking sequence: Indices 8636 -- 9135
CGGATGGAGCAGAGAGAGGGTCTGCAAAGTTGACCTGGGGCATGGTAGTCGAGGGAGTGGGGGTA
GTAATGGTAGTAGTAGTAGTAGTGGTGGTAGTGATAGTGGTAGTATTGGTAGTGGAGGGAATGGT
GGTGGTAGTAGTGGTTTTGGTGGTAGTATTAGTATTAGTAGAGGTAGTGGTTGTGTTGGTTGTGT
ACTTGTGGTTTACATGACGGTCTACAACGGTCTTAGTGGTTAACAAGAGCGTGGAAGAAAGAGAA
GAAGGTAAGGTAGAAAAGCAGGAAGAGAGAAGCAGGGAAGACACAAAAACAGGGTTGGGAGAACA
GTGTTACGGAAAGAATAGTACACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGGATG
GGTAGGCTATTTGTAGCGCATAGTATCTACAACAACCAAGTATCCTCCAGAAGTGCACACTTGGG
ACCTTTAGTGGAGCCCAGCGAAGTAGCATCTACCACAACACTGCT
Right flanking sequence: Indices 9163 -- 9662
ACTAAGCCATCACCACACCGCTTCCCTCACCTTCACTTAGCCTTGGACCATGCCACCACCCACAT
TAGCCATGTCTCCTGCCTAAACCACCGTCAATTCGCTAATAAAACCGTCTACACCCACACAATCA
TTCTCCTACCCCACACACCACCCCATTTGTCTTCCCCATCCCACCCTCTCGCTCTACGCTCGTGC
GACCCACCGTCCACCTACGCCTCCTACCCAAAAAGACCACGCTTAGACCGTAACAACCCTATATA
ACCTCTCACCGAGTAAAACCCACGTAACAGTCACGTAAACCCACCCACAGACCACACCCAGACCA
CACCACACCCACACCACCCACACACCCCACCCACACCCCGTTTATGCCCGCTCCCGCCCGCCAAA
CCACGTCTTTTCACCCGTCTTTTCACCCGTGCCCGACCCGCGTTTTGAACACTTGACCACTTTTG
ACCACCAATGAAGCTTCTCTCTGTGGTGGCCCTCGCGGGCCTTGT
Found at i:9477 original size:11 final size:12
Alignment explanation
Indices: 9463--9504 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
9453 TCACGTAAAC
9463 CCAC-CCACAGA
1 CCACACCACAGA
9474 CCACACC-CAGA
1 CCACACCACAGA
*
9485 CCACACCACA-C
1 CCACACCACAGA
9496 CCACACCAC
1 CCACACCAC
9505 CCACACACCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 24 0.86
12 4 0.14
ACGTcount: A:0.36, C:0.60, G:0.05, T:0.00
Consensus pattern (12 bp):
CCACACCACAGA
Left flanking sequence: Indices 8963 -- 9462
GTTACGGAAAGAATAGTACACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGGATGGG
TAGGCTATTTGTAGCGCATAGTATCTACAACAACCAAGTATCCTCCAGAAGTGCACACTTGGGAC
CTTTAGTGGAGCCCAGCGAAGTAGCATCTACCACAACACTGCTCCAACTCTCCCAACTCTCCCAA
CTCTCACTAAGCCATCACCACACCGCTTCCCTCACCTTCACTTAGCCTTGGACCATGCCACCACC
CACATTAGCCATGTCTCCTGCCTAAACCACCGTCAATTCGCTAATAAAACCGTCTACACCCACAC
AATCATTCTCCTACCCCACACACCACCCCATTTGTCTTCCCCATCCCACCCTCTCGCTCTACGCT
CGTGCGACCCACCGTCCACCTACGCCTCCTACCCAAAAAGACCACGCTTAGACCGTAACAACCCT
ATATAACCTCTCACCGAGTAAAACCCACGTAACAGTCACGTAAAC
Right flanking sequence: Indices 9505 -- 10004
CCACACACCCCACCCACACCCCGTTTATGCCCGCTCCCGCCCGCCAAACCACGTCTTTTCACCCG
TCTTTTCACCCGTGCCCGACCCGCGTTTTGAACACTTGACCACTTTTGACCACCAATGAAGCTTC
TCTCTGTGGTGGCCCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTCGAG
TTCCTCGAGGCGGTGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTTGT
CGAGGACAACGCCCCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGA
TCCAGCAGGACTGGGACAACCACTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAAC
GAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTG
GGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGC
Found at i:9494 original size:16 final size:16
Alignment explanation
Indices: 9473--9524 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
9463 CCACCCACAG
*
9473 ACCACACCCAGACCAC
1 ACCACACCCACACCAC
9489 ACCACACCCACACCAC
1 ACCACACCCACACCAC
*
9505 -CCACACACCCCACCCAC
1 ACCACAC-CCACA-CCAC
9522 ACC
1 ACC
9525 CCGTTTATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 6 0.19
16 19 0.61
17 4 0.13
18 2 0.06
ACGTcount: A:0.35, C:0.63, G:0.02, T:0.00
Consensus pattern (16 bp):
ACCACACCCACACCAC
Left flanking sequence: Indices 8973 -- 9472
GAATAGTACACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGGATGGGTAGGCTATTT
GTAGCGCATAGTATCTACAACAACCAAGTATCCTCCAGAAGTGCACACTTGGGACCTTTAGTGGA
GCCCAGCGAAGTAGCATCTACCACAACACTGCTCCAACTCTCCCAACTCTCCCAACTCTCACTAA
GCCATCACCACACCGCTTCCCTCACCTTCACTTAGCCTTGGACCATGCCACCACCCACATTAGCC
ATGTCTCCTGCCTAAACCACCGTCAATTCGCTAATAAAACCGTCTACACCCACACAATCATTCTC
CTACCCCACACACCACCCCATTTGTCTTCCCCATCCCACCCTCTCGCTCTACGCTCGTGCGACCC
ACCGTCCACCTACGCCTCCTACCCAAAAAGACCACGCTTAGACCGTAACAACCCTATATAACCTC
TCACCGAGTAAAACCCACGTAACAGTCACGTAAACCCACCCACAG
Right flanking sequence: Indices 9525 -- 10024
CCGTTTATGCCCGCTCCCGCCCGCCAAACCACGTCTTTTCACCCGTCTTTTCACCCGTGCCCGAC
CCGCGTTTTGAACACTTGACCACTTTTGACCACCAATGAAGCTTCTCTCTGTGGTGGCCCTCGCG
GGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTCGAGTTCCTCGAGGCGGTGGCCGC
ACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTTGTCGAGGACAACGCCCCCGAGG
ACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGATCCAGCAGGACTGGGACAAC
CACTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGA
GTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCG
TGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACC
Found at i:9499 original size:22 final size:23
Alignment explanation
Indices: 9474--9525 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
9464 CACCCACAGA
*
9474 CCACACCCAGAC-CACACCACAC
1 CCACACCCACACACACACCACAC
* *
9496 CCACA-CCACCCACACACCCCAC
1 CCACACCCACACACACACCACAC
9518 CCACACCC
1 CCACACCC
9526 CGTTTATGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 4 0.16
22 19 0.76
23 2 0.08
ACGTcount: A:0.33, C:0.65, G:0.02, T:0.00
Consensus pattern (23 bp):
CCACACCCACACACACACCACAC
Left flanking sequence: Indices 8974 -- 9473
AATAGTACACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGGATGGGTAGGCTATTTG
TAGCGCATAGTATCTACAACAACCAAGTATCCTCCAGAAGTGCACACTTGGGACCTTTAGTGGAG
CCCAGCGAAGTAGCATCTACCACAACACTGCTCCAACTCTCCCAACTCTCCCAACTCTCACTAAG
CCATCACCACACCGCTTCCCTCACCTTCACTTAGCCTTGGACCATGCCACCACCCACATTAGCCA
TGTCTCCTGCCTAAACCACCGTCAATTCGCTAATAAAACCGTCTACACCCACACAATCATTCTCC
TACCCCACACACCACCCCATTTGTCTTCCCCATCCCACCCTCTCGCTCTACGCTCGTGCGACCCA
CCGTCCACCTACGCCTCCTACCCAAAAAGACCACGCTTAGACCGTAACAACCCTATATAACCTCT
CACCGAGTAAAACCCACGTAACAGTCACGTAAACCCACCCACAGA
Right flanking sequence: Indices 9526 -- 10025
CGTTTATGCCCGCTCCCGCCCGCCAAACCACGTCTTTTCACCCGTCTTTTCACCCGTGCCCGACC
CGCGTTTTGAACACTTGACCACTTTTGACCACCAATGAAGCTTCTCTCTGTGGTGGCCCTCGCGG
GCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTCGAGTTCCTCGAGGCGGTGGCCGCA
CACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTTGTCGAGGACAACGCCCCCGAGGA
CGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGATCCAGCAGGACTGGGACAACC
ACTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGAG
TGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCGT
GCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACCT
Found at i:9524 original size:11 final size:11
Alignment explanation
Indices: 9485--9526 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
9475 CACACCCAGA
*
9485 CCACACCACAC
1 CCACACCCCAC
9496 CCACACCACC-C
1 CCACACC-CCAC
*
9507 ACACACCCCAC
1 CCACACCCCAC
9518 CCACACCCC
1 CCACACCCC
9527 GTTTATGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 2 0.08
11 23 0.88
12 1 0.04
ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00
Consensus pattern (11 bp):
CCACACCCCAC
Left flanking sequence: Indices 8985 -- 9484
GAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGGATGGGTAGGCTATTTGTAGCGCATAGT
ATCTACAACAACCAAGTATCCTCCAGAAGTGCACACTTGGGACCTTTAGTGGAGCCCAGCGAAGT
AGCATCTACCACAACACTGCTCCAACTCTCCCAACTCTCCCAACTCTCACTAAGCCATCACCACA
CCGCTTCCCTCACCTTCACTTAGCCTTGGACCATGCCACCACCCACATTAGCCATGTCTCCTGCC
TAAACCACCGTCAATTCGCTAATAAAACCGTCTACACCCACACAATCATTCTCCTACCCCACACA
CCACCCCATTTGTCTTCCCCATCCCACCCTCTCGCTCTACGCTCGTGCGACCCACCGTCCACCTA
CGCCTCCTACCCAAAAAGACCACGCTTAGACCGTAACAACCCTATATAACCTCTCACCGAGTAAA
ACCCACGTAACAGTCACGTAAACCCACCCACAGACCACACCCAGA
Right flanking sequence: Indices 9527 -- 10026
GTTTATGCCCGCTCCCGCCCGCCAAACCACGTCTTTTCACCCGTCTTTTCACCCGTGCCCGACCC
GCGTTTTGAACACTTGACCACTTTTGACCACCAATGAAGCTTCTCTCTGTGGTGGCCCTCGCGGG
CCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTCGAGTTCCTCGAGGCGGTGGCCGCAC
ACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTTGTCGAGGACAACGCCCCCGAGGAC
GTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGATCCAGCAGGACTGGGACAACCA
CTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGAGT
GGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCGTG
CACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACCTG
Found at i:9573 original size:12 final size:12
Alignment explanation
Indices: 9556--9582 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9546 CGCCAAACCA
9556 CGTCTTTTCACC
1 CGTCTTTTCACC
9568 CGTCTTTTCACC
1 CGTCTTTTCACC
9580 CGT
1 CGT
9583 GCCCGACCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.41, G:0.11, T:0.41
Consensus pattern (12 bp):
CGTCTTTTCACC
Left flanking sequence: Indices 9056 -- 9555
AACAACCAAGTATCCTCCAGAAGTGCACACTTGGGACCTTTAGTGGAGCCCAGCGAAGTAGCATC
TACCACAACACTGCTCCAACTCTCCCAACTCTCCCAACTCTCACTAAGCCATCACCACACCGCTT
CCCTCACCTTCACTTAGCCTTGGACCATGCCACCACCCACATTAGCCATGTCTCCTGCCTAAACC
ACCGTCAATTCGCTAATAAAACCGTCTACACCCACACAATCATTCTCCTACCCCACACACCACCC
CATTTGTCTTCCCCATCCCACCCTCTCGCTCTACGCTCGTGCGACCCACCGTCCACCTACGCCTC
CTACCCAAAAAGACCACGCTTAGACCGTAACAACCCTATATAACCTCTCACCGAGTAAAACCCAC
GTAACAGTCACGTAAACCCACCCACAGACCACACCCAGACCACACCACACCCACACCACCCACAC
ACCCCACCCACACCCCGTTTATGCCCGCTCCCGCCCGCCAAACCA
Right flanking sequence: Indices 9583 -- 10082
GCCCGACCCGCGTTTTGAACACTTGACCACTTTTGACCACCAATGAAGCTTCTCTCTGTGGTGGC
CCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTCGAGTTCCTCGAGGCGG
TGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTTGTCGAGGACAACGCC
CCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGATCCAGCAGGACTG
GGACAACCACTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCA
CCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAAC
GGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACCTGGAGCCCGTGGA
GCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATGATTTT
Found at i:10306 original size:8 final size:8
Alignment explanation
Indices: 10295--10321 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
10285 TATTACGTTA
10295 ATACGAAC
1 ATACGAAC
10303 ATACGAAC
1 ATACGAAC
10311 ATACGAAC
1 ATACGAAC
10319 ATA
1 ATA
10322 TTGTAGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.22, G:0.11, T:0.15
Consensus pattern (8 bp):
ATACGAAC
Left flanking sequence: Indices 9795 -- 10294
CGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGATCCAGCAGGACTGGGACAACCACTTCCACG
TCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGAGTGGAACGAC
GACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTT
CGACGACTTGTACGCGATCAAGTCCGACGCCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCA
TTGGCGACGAGGGCCCGGTGATGATTTTCTACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGG
ATGAACGTGCTCTGGCACAACGCCGACGGGGGCAAGCACCGGTTTGTGTGGCGGTACATTGTAGC
GTAGGGGAGTGGGGACTGGTGGGACTGGCCGTGTGGGACGATGACACTGCCAACTAGTAGTGCCT
CACATAGTCGTAAGGTCAAGGTGACTTTCATTACTTATTACGTTA
Right flanking sequence: Indices 10322 -- 10821
TTGTAGAGTAGGTTGGTGGGCCTGGTGGTGGACCTGGTGGTGGTGGACCTGGTGGTGGACCTGGT
GGTGGACCTGGTGGTGAACGGTGGTGGACCAAGTGGTGGACCAAGTAGACTAGTGGAGGGTCAAG
TGCACTAGTGGTGGACTAGGTGGTGATAGCTATATAGGTGAATTTCTTGGGATGGCCCATTAACC
CAACTTAGACTAGACCTGTTACACAACCCAGCGTCGTCTTTTCGCACTTTGTCCTCGTCTAACGA
CTCGTATGTCAATCCACCACCACCGTTGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGAT
AGGCCCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTATGCCTAACCATCTACGGTA
GCCCTTTAATGCTGAGGAAGTCACAGGAATGTAAACCCGACCGGATCACGCAACCTACATTCTAT
TGGTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCCATC
Found at i:10372 original size:27 final size:24
Alignment explanation
Indices: 10335--10428 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 24
10325 TAGAGTAGGT
*
10335 TGGTGGGCCTGGTGGTGGACCTGGTGG
1 TGGTGGACCTGGTGGTGGACC---TGG
10362 TGGTGGACCTGGTGGTGGACCTGG
1 TGGTGGACCTGGTGGTGGACCTGG
*
10386 TGGTGGACCTGGTGGT-GAAC-GG
1 TGGTGGACCTGGTGGTGGACCTGG
**
10408 TGGTGGACCAAGTGGTGGACC
1 TGGTGGACCTGGTGGTGGACC
10429 AAGTAGACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
22 16 0.26
23 6 0.10
24 19 0.31
27 20 0.33
ACGTcount: A:0.11, C:0.16, G:0.50, T:0.23
Consensus pattern (24 bp):
TGGTGGACCTGGTGGTGGACCTGG
Left flanking sequence: Indices 9835 -- 10334
CAGGACTGGGACAACCACTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCT
CATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGT
GGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACCTGGAG
CCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATGATTTTCTACGGCGACTA
CAAGACCGAGGAGTTTGAGCAGTGGATGAACGTGCTCTGGCACAACGCCGACGGGGGCAAGCACC
GGTTTGTGTGGCGGTACATTGTAGCGTAGGGGAGTGGGGACTGGTGGGACTGGCCGTGTGGGACG
ATGACACTGCCAACTAGTAGTGCCTCACATAGTCGTAAGGTCAAGGTGACTTTCATTACTTATTA
CGTTAATACGAACATACGAACATACGAACATATTGTAGAGTAGGT
Right flanking sequence: Indices 10429 -- 10928
AAGTAGACTAGTGGAGGGTCAAGTGCACTAGTGGTGGACTAGGTGGTGATAGCTATATAGGTGAA
TTTCTTGGGATGGCCCATTAACCCAACTTAGACTAGACCTGTTACACAACCCAGCGTCGTCTTTT
CGCACTTTGTCCTCGTCTAACGACTCGTATGTCAATCCACCACCACCGTTGTGTAGACAACCACC
CGGACTCAGGGGTGTTTATGGATAGGCCCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTG
GTTATGCCTAACCATCTACGGTAGCCCTTTAATGCTGAGGAAGTCACAGGAATGTAAACCCGACC
GGATCACGCAACCTACATTCTATTGGTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCC
ATCTATTCCATAACCACACCCCTCGATCTGAGTAAGTAATCCACCATGGCTGAAAACGACAAGAC
ATCTCCCAAAAGTGCCTTCGGTCCCTTGGCTTCTGACCCCGAGGT
Found at i:10432 original size:12 final size:12
Alignment explanation
Indices: 10335--10428 Score: 111
Period size: 12 Copynumber: 7.8 Consensus size: 12
10325 TAGAGTAGGT
*
10335 TGGTGGGCCTGG
1 TGGTGGACCTGG
10347 TGGTGGACCTGGTGG
1 TGGTGGACC---TGG
10362 TGGTGGACCTGG
1 TGGTGGACCTGG
10374 TGGTGGACCTGG
1 TGGTGGACCTGG
10386 TGGTGGACCTGG
1 TGGTGGACCTGG
*
10398 TGGT-GAAC-GG
1 TGGTGGACCTGG
**
10408 TGGTGGACCAAG
1 TGGTGGACCTGG
10420 TGGTGGACC
1 TGGTGGACC
10429 AAGTAGACTA
Statistics
Matches: 73, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
10 6 0.08
11 6 0.08
12 49 0.67
15 12 0.16
ACGTcount: A:0.11, C:0.16, G:0.50, T:0.23
Consensus pattern (12 bp):
TGGTGGACCTGG
Left flanking sequence: Indices 9835 -- 10334
CAGGACTGGGACAACCACTTCCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCT
CATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGT
GGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACCTGGAG
CCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATGATTTTCTACGGCGACTA
CAAGACCGAGGAGTTTGAGCAGTGGATGAACGTGCTCTGGCACAACGCCGACGGGGGCAAGCACC
GGTTTGTGTGGCGGTACATTGTAGCGTAGGGGAGTGGGGACTGGTGGGACTGGCCGTGTGGGACG
ATGACACTGCCAACTAGTAGTGCCTCACATAGTCGTAAGGTCAAGGTGACTTTCATTACTTATTA
CGTTAATACGAACATACGAACATACGAACATATTGTAGAGTAGGT
Right flanking sequence: Indices 10429 -- 10928
AAGTAGACTAGTGGAGGGTCAAGTGCACTAGTGGTGGACTAGGTGGTGATAGCTATATAGGTGAA
TTTCTTGGGATGGCCCATTAACCCAACTTAGACTAGACCTGTTACACAACCCAGCGTCGTCTTTT
CGCACTTTGTCCTCGTCTAACGACTCGTATGTCAATCCACCACCACCGTTGTGTAGACAACCACC
CGGACTCAGGGGTGTTTATGGATAGGCCCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTG
GTTATGCCTAACCATCTACGGTAGCCCTTTAATGCTGAGGAAGTCACAGGAATGTAAACCCGACC
GGATCACGCAACCTACATTCTATTGGTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCC
ATCTATTCCATAACCACACCCCTCGATCTGAGTAAGTAATCCACCATGGCTGAAAACGACAAGAC
ATCTCCCAAAAGTGCCTTCGGTCCCTTGGCTTCTGACCCCGAGGT
Found at i:11027 original size:21 final size:21
Alignment explanation
Indices: 11001--11045 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
10991 GTTTGGACCA
11001 AATTGATGCTAAGTTAGAGAG
1 AATTGATGCTAAGTTAGAGAG
*
11022 AATTGATGCTAAGTTCGAGAG
1 AATTGATGCTAAGTTAGAGAG
11043 AAT
1 AAT
11046 CGAGAAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.29
Consensus pattern (21 bp):
AATTGATGCTAAGTTAGAGAG
Left flanking sequence: Indices 10501 -- 11000
GGATGGCCCATTAACCCAACTTAGACTAGACCTGTTACACAACCCAGCGTCGTCTTTTCGCACTT
TGTCCTCGTCTAACGACTCGTATGTCAATCCACCACCACCGTTGTGTAGACAACCACCCGGACTC
AGGGGTGTTTATGGATAGGCCCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTATGC
CTAACCATCTACGGTAGCCCTTTAATGCTGAGGAAGTCACAGGAATGTAAACCCGACCGGATCAC
GCAACCTACATTCTATTGGTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCCATCTATT
CCATAACCACACCCCTCGATCTGAGTAAGTAATCCACCATGGCTGAAAACGACAAGACATCTCCC
AAAAGTGCCTTCGGTCCCTTGGCTTCTGACCCCGAGGTCGGGTCCCAACATGATGAGGCGGAAAA
TGCCTTGAATTCTCTTTTGGTCAAAGTCATGGATCGTTTGGACCA
Right flanking sequence: Indices 11046 -- 11545
CGAGAAACTTGATTCACGCTTCGAGAAACTTCGCTTGGGTAACCTGGAGAACTGCACCAAACCTT
TGGTGAAGGACACCACCCTCCAGGCTCCTGTCGGCAAAACCCGCTCGTCTGAACCTGTATCCTGC
CTCGATACTTCCTTCATTATGGACTCGCTTCTCCCTGGCCACGACAATGACTTGCCCGATAAAGT
GAAGGTGCACATCAGTGACCAAGAACTTCTCGTTGCTAGCACACCTGACGCCATCATTGACCGGT
CTGACCCCGAGCATCCCAAGATTCGAACTGAACTCCTTACTCTTTATGTTTAGATGGCTTAGAAC
TACAGTCTTAACGTTTTGCACAGATACAGGAATGTAAAGTTAGCATCCAGGTCTTGCACCCTGGT
TGCAGCCACACCCAATTGGGATTGCCACCGGATCATCCCACTCACCACCCATGTAGGGCTAAAAA
TCCTCGTGATTTTTGCGTATGCTCAGACTTGTTACCAAAGGTCTA
Found at i:16208 original size:16 final size:16
Alignment explanation
Indices: 16187--16223 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
16177 CACGACGCTG
16187 GCCACCCATTACTCTA
1 GCCACCCATTACTCTA
16203 GCCACCCATTACTCTA
1 GCCACCCATTACTCTA
16219 GCCAC
1 GCCAC
16224 ACACTACTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.46, G:0.08, T:0.22
Consensus pattern (16 bp):
GCCACCCATTACTCTA
Left flanking sequence: Indices 15687 -- 16186
TGAGACTGAGAGCACTGCGGGCAAGACGGTTATAGGCAATCATTTAGATCACTGAGACAAGGTTG
CAGGGCCTCCCCAGCAAGAATTAGGGGGTGTTTACCCCGGAAACAAATTTGGTGGCTTAGCCACA
AACGACCCAAAAATGTTCCGTATACGATTAGTCGTGGCTGACAAATAGCAAGCCTCGGCTTTGTA
CAACCCAGGAGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTCGACGACTCGCAATAA
CTATTGCACCTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGGTATAGCCACCTGTTA
ATCCCTCAGAAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAGTTGCCGACTGCCGGT
GGCGTTTAGACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAACAGCACTTGTAATAGC
ATCCGGAATTTAACCGCCTGAGTATTACTCTAGTTCACGACGCTG
Right flanking sequence: Indices 16224 -- 16723
ACACTACTCCAACCTCGAATTCACCAACCTCACGCTATTCCAGCCTATATTCCTCCCACCTTACA
CAAAACTCCGGCTTTACTCATTACCCCCACTAAACTCTTCCATGTACCAAAACACGTCTCTGAAC
CGACGAACGGATAAACTCTACCATCATTTACACAACTCTACATCGTTTCCACAACTCTACCATCA
TTTCTACAACCCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTAC
ACCACCCTACACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTA
TCGCAAATCACCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAAC
GCCGTACGATTCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCT
CAGTAATTACCACCACCGACCACCACCATCCACCACGCCGGGCCC
Found at i:16231 original size:16 final size:16
Alignment explanation
Indices: 16196--16232 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
16186 GGCCACCCAT
* *
16196 TACTCTAGCCACCCAT
1 TACTCTAGCCACACAC
16212 TACTCTAGCCACACAC
1 TACTCTAGCCACACAC
16228 TACTC
1 TACTC
16233 CAACCTCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.43, G:0.05, T:0.24
Consensus pattern (16 bp):
TACTCTAGCCACACAC
Left flanking sequence: Indices 15696 -- 16195
GAGCACTGCGGGCAAGACGGTTATAGGCAATCATTTAGATCACTGAGACAAGGTTGCAGGGCCTC
CCCAGCAAGAATTAGGGGGTGTTTACCCCGGAAACAAATTTGGTGGCTTAGCCACAAACGACCCA
AAAATGTTCCGTATACGATTAGTCGTGGCTGACAAATAGCAAGCCTCGGCTTTGTACAACCCAGG
AGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTCGACGACTCGCAATAACTATTGCAC
CTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGGTATAGCCACCTGTTAATCCCTCAG
AAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAGTTGCCGACTGCCGGTGGCGTTTAG
ACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAACAGCACTTGTAATAGCATCCGGAAT
TTAACCGCCTGAGTATTACTCTAGTTCACGACGCTGGCCACCCAT
Right flanking sequence: Indices 16233 -- 16732
CAACCTCGAATTCACCAACCTCACGCTATTCCAGCCTATATTCCTCCCACCTTACACAAAACTCC
GGCTTTACTCATTACCCCCACTAAACTCTTCCATGTACCAAAACACGTCTCTGAACCGACGAACG
GATAAACTCTACCATCATTTACACAACTCTACATCGTTTCCACAACTCTACCATCATTTCTACAA
CCCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTACACCACCCTA
CACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCGCAAATC
ACCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCCGTACGA
TTCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAGTAATTA
CCACCACCGACCACCACCATCCACCACGCCGGGCCCACGCCTGGC
Found at i:16392 original size:20 final size:20
Alignment explanation
Indices: 16367--16421 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 20
16357 CGAACGGATA
16367 AACTCTACCATCATTTACAC
1 AACTCTACCATCATTTACAC
* *
16387 AACTCTA-CATCGTTTCCAC
1 AACTCTACCATCATTTACAC
16406 AACTCTACCATCATTT
1 AACTCTACCATCATTT
16422 CTACAACCCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.31, C:0.35, G:0.02, T:0.33
Consensus pattern (20 bp):
AACTCTACCATCATTTACAC
Left flanking sequence: Indices 15867 -- 16366
AGCCTCGGCTTTGTACAACCCAGGAGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTC
GACGACTCGCAATAACTATTGCACCTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGG
TATAGCCACCTGTTAATCCCTCAGAAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAG
TTGCCGACTGCCGGTGGCGTTTAGACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAAC
AGCACTTGTAATAGCATCCGGAATTTAACCGCCTGAGTATTACTCTAGTTCACGACGCTGGCCAC
CCATTACTCTAGCCACCCATTACTCTAGCCACACACTACTCCAACCTCGAATTCACCAACCTCAC
GCTATTCCAGCCTATATTCCTCCCACCTTACACAAAACTCCGGCTTTACTCATTACCCCCACTAA
ACTCTTCCATGTACCAAAACACGTCTCTGAACCGACGAACGGATA
Right flanking sequence: Indices 16422 -- 16921
CTACAACCCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTACACC
ACCCTACACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCG
CAAATCACCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCC
GTACGATTCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAG
TAATTACCACCACCGACCACCACCATCCACCACGCCGGGCCCACGCCTGGCCCCCTGGTCCACCC
TGGCCCACCCTCAAACCCCCTCTACACGCCCACACCCCTCTCCACCCGTTTTTCGCAAACCCCGA
GTTAACCTTTCGTTGCTCGTAGAGGCTCTTGGCGGCGTCTACGGAGCCTCACGCTGTATACACAC
CGGGCCCGTCCACCCAGCGGATCCCCCACCAACCGGGCTTAGGTG
Found at i:16422 original size:20 final size:20
Alignment explanation
Indices: 16367--16428 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
16357 CGAACGGATA
*
16367 AACTCTACCATCATTTACAC
1 AACTCTACCATCATTTCCAC
*
16387 AACTCTA-CATCGTTTCCAC
1 AACTCTACCATCATTTCCAC
*
16406 AACTCTACCATCATTTCTAC
1 AACTCTACCATCATTTCCAC
16426 AAC
1 AAC
16429 CCTAACCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 17 0.46
20 20 0.54
ACGTcount: A:0.32, C:0.35, G:0.02, T:0.31
Consensus pattern (20 bp):
AACTCTACCATCATTTCCAC
Left flanking sequence: Indices 15867 -- 16366
AGCCTCGGCTTTGTACAACCCAGGAGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTC
GACGACTCGCAATAACTATTGCACCTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGG
TATAGCCACCTGTTAATCCCTCAGAAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAG
TTGCCGACTGCCGGTGGCGTTTAGACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAAC
AGCACTTGTAATAGCATCCGGAATTTAACCGCCTGAGTATTACTCTAGTTCACGACGCTGGCCAC
CCATTACTCTAGCCACCCATTACTCTAGCCACACACTACTCCAACCTCGAATTCACCAACCTCAC
GCTATTCCAGCCTATATTCCTCCCACCTTACACAAAACTCCGGCTTTACTCATTACCCCCACTAA
ACTCTTCCATGTACCAAAACACGTCTCTGAACCGACGAACGGATA
Right flanking sequence: Indices 16429 -- 16928
CCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTACACCACCCTAC
ACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCGCAAATCA
CCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCCGTACGAT
TCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAGTAATTAC
CACCACCGACCACCACCATCCACCACGCCGGGCCCACGCCTGGCCCCCTGGTCCACCCTGGCCCA
CCCTCAAACCCCCTCTACACGCCCACACCCCTCTCCACCCGTTTTTCGCAAACCCCGAGTTAACC
TTTCGTTGCTCGTAGAGGCTCTTGGCGGCGTCTACGGAGCCTCACGCTGTATACACACCGGGCCC
GTCCACCCAGCGGATCCCCCACCAACCGGGCTTAGGTGGAACACC
Found at i:16487 original size:10 final size:10
Alignment explanation
Indices: 16467--16514 Score: 64
Period size: 9 Copynumber: 4.9 Consensus size: 10
16457 CACCACCAGC
16467 CCCTCACACCA
1 CCCT-ACACCA
16478 CCCTACACCA
1 CCCTACACCA
16488 CCCTACA-CA
1 CCCTACACCA
*
16497 CCCTACA-AA
1 CCCTACACCA
16506 CCCTACACC
1 CCCTACACC
16515 CTCGGAAGCG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 17 0.50
10 13 0.38
11 4 0.12
ACGTcount: A:0.31, C:0.58, G:0.00, T:0.10
Consensus pattern (10 bp):
CCCTACACCA
Left flanking sequence: Indices 15967 -- 16466
TTTTTCGTGTTTCGACCTGCCTTCGGTGGGTATAGCCACCTGTTAATCCCTCAGAAGCAACGCGT
CTGGCTTTGTAACCAGCCGAGTTTCACGAGTTGCCGACTGCCGGTGGCGTTTAGACAGTGTGTGT
CGAGGGAGCCACAGTGCCCGTTTTTTGAACAGCACTTGTAATAGCATCCGGAATTTAACCGCCTG
AGTATTACTCTAGTTCACGACGCTGGCCACCCATTACTCTAGCCACCCATTACTCTAGCCACACA
CTACTCCAACCTCGAATTCACCAACCTCACGCTATTCCAGCCTATATTCCTCCCACCTTACACAA
AACTCCGGCTTTACTCATTACCCCCACTAAACTCTTCCATGTACCAAAACACGTCTCTGAACCGA
CGAACGGATAAACTCTACCATCATTTACACAACTCTACATCGTTTCCACAACTCTACCATCATTT
CTACAACCCTAACCCACAACCAAACCACCACCCACCACCACCAGC
Right flanking sequence: Indices 16515 -- 17014
CTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCGCAAATCACCCCGCTTCTCCACAACGTTT
GGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCCGTACGATTCTCCTGTGCAACGTAGCGTT
TTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAGTAATTACCACCACCGACCACCACCATCC
ACCACGCCGGGCCCACGCCTGGCCCCCTGGTCCACCCTGGCCCACCCTCAAACCCCCTCTACACG
CCCACACCCCTCTCCACCCGTTTTTCGCAAACCCCGAGTTAACCTTTCGTTGCTCGTAGAGGCTC
TTGGCGGCGTCTACGGAGCCTCACGCTGTATACACACCGGGCCCGTCCACCCAGCGGATCCCCCA
CCAACCGGGCTTAGGTGGAACACCCCAAGCACCACAAAACACCACCACCGTCCACTCTCCACCAC
TCCCACGCCCACCGCCCAGCCCTGAACCCCTCCTCGCCACCCCTC
Found at i:17497 original size:12 final size:12
Alignment explanation
Indices: 17480--17545 Score: 78
Period size: 12 Copynumber: 5.5 Consensus size: 12
17470 GGCTGTTTCG
*
17480 GAAACCAAGTCT
1 GAAACCAAGACT
*
17492 GAAACCAAGGCT
1 GAAACCAAGACT
*
17504 GAAACCAACACT
1 GAAACCAAGACT
*
17516 GAAACCAACACT
1 GAAACCAAGACT
* *
17528 GAAACGAAGGCT
1 GAAACCAAGACT
17540 GAAACC
1 GAAACC
17546 CACACCCTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (12 bp):
GAAACCAAGACT
Left flanking sequence: Indices 16980 -- 17479
ACCGCCCAGCCCTGAACCCCTCCTCGCCACCCCTCGGCTGCCCCTGACGACGCCAGCTTCGGTCA
CATCTCGTCCTGACATCATGCTGCAGCAATGAGGCAATATCCCTGTGTCTCCCCCGCTCTGGTAC
GCGCACGACACAGCCAAAAAAAATTTTGTCGTCATCAAGTCAAAAACAGTGCACCCCCCAGGCGT
TCCGAGACGAACTTACACAACTCCCCTTTTCGACAGCGATGAACAATCTGCGCTCTACCCCGGCG
CGTCCCCCCTGGACGGTGGCGGTGGCCTCGTGCGCCGTTGCGTTTCTCCACATGGTGTACACCTG
GCTCCACCGGGTGTTGGTGACGGTGGTGGTCCACGACGAGCCCGCGGCGACGGCGTTGTTCCCGA
GCAAGGGCAAGCTCGACCACGTGCGCAAGCTCCCGAGCAAGCAGCAAGCGTCGCTTTTCCCTCCC
AGCCCGCGGATGGCGTTGTCTCCGGTATCCCAGCCGGCTGTTTCG
Right flanking sequence: Indices 17546 -- 18045
CACACCCTTTCCAAGACTTTTCCCACCATGACCCCCACCCTCTGTCTGACGGGCCTCACCACCCA
CATCCTCCCGTTCAAAAACGAGAACGGCGAGCTCGAGTGGACGTTTGCCGACGGCGGCGAGGAGC
TCGACGCGTTCCGCATGCTGCCCTCGGACGGCTCGGTGGACGGCTCGCCCGCCAAGGCGTTGCTG
CTGCTGCTGCTGGACAACTTGGCCGAGTCGCCCGACGACGACAAGGTGCACGCGTGCCCGTACTG
CGACACCACGTTCAAGATCCGCGGGTACTTGACCCGCCACTTGAAGAAGCACGCGACGAAAAAGG
CGTACCTGTGCCCGTTCCACAAGTTTTCCACCTACACCGACGACAACAACGTGCCGCACAAGTGC
CACCCCACCGGCGGGTTCTCTCGCCGCGACACCTACAAAACCCACCTCAAATCGCGCCACTTCAC
CTACCCCAACGGCACCAAAACGAAGGACCGCGGCCAGCTGCCGGG
Found at i:17530 original size:36 final size:36
Alignment explanation
Indices: 17480--17550 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
17470 GGCTGTTTCG
**
17480 GAAACCAAGTCTGAAACCAAGGCTGAAACCAACACT
1 GAAACCAACACTGAAACCAAGGCTGAAACCAACACT
* *
17516 GAAACCAACACTGAAACGAAGGCTGAAACCCACAC
1 GAAACCAACACTGAAACCAAGGCTGAAACCAACAC
17551 CCTTTCCAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.30, G:0.17, T:0.08
Consensus pattern (36 bp):
GAAACCAACACTGAAACCAAGGCTGAAACCAACACT
Left flanking sequence: Indices 16980 -- 17479
ACCGCCCAGCCCTGAACCCCTCCTCGCCACCCCTCGGCTGCCCCTGACGACGCCAGCTTCGGTCA
CATCTCGTCCTGACATCATGCTGCAGCAATGAGGCAATATCCCTGTGTCTCCCCCGCTCTGGTAC
GCGCACGACACAGCCAAAAAAAATTTTGTCGTCATCAAGTCAAAAACAGTGCACCCCCCAGGCGT
TCCGAGACGAACTTACACAACTCCCCTTTTCGACAGCGATGAACAATCTGCGCTCTACCCCGGCG
CGTCCCCCCTGGACGGTGGCGGTGGCCTCGTGCGCCGTTGCGTTTCTCCACATGGTGTACACCTG
GCTCCACCGGGTGTTGGTGACGGTGGTGGTCCACGACGAGCCCGCGGCGACGGCGTTGTTCCCGA
GCAAGGGCAAGCTCGACCACGTGCGCAAGCTCCCGAGCAAGCAGCAAGCGTCGCTTTTCCCTCCC
AGCCCGCGGATGGCGTTGTCTCCGGTATCCCAGCCGGCTGTTTCG
Right flanking sequence: Indices 17551 -- 18050
CCTTTCCAAGACTTTTCCCACCATGACCCCCACCCTCTGTCTGACGGGCCTCACCACCCACATCC
TCCCGTTCAAAAACGAGAACGGCGAGCTCGAGTGGACGTTTGCCGACGGCGGCGAGGAGCTCGAC
GCGTTCCGCATGCTGCCCTCGGACGGCTCGGTGGACGGCTCGCCCGCCAAGGCGTTGCTGCTGCT
GCTGCTGGACAACTTGGCCGAGTCGCCCGACGACGACAAGGTGCACGCGTGCCCGTACTGCGACA
CCACGTTCAAGATCCGCGGGTACTTGACCCGCCACTTGAAGAAGCACGCGACGAAAAAGGCGTAC
CTGTGCCCGTTCCACAAGTTTTCCACCTACACCGACGACAACAACGTGCCGCACAAGTGCCACCC
CACCGGCGGGTTCTCTCGCCGCGACACCTACAAAACCCACCTCAAATCGCGCCACTTCACCTACC
CCAACGGCACCAAAACGAAGGACCGCGGCCAGCTGCCGGGCTCGT
Found at i:18699 original size:19 final size:19
Alignment explanation
Indices: 18663--18714 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
18653 GATGAGAACG
18663 AGAACGTG-G-ACGTGAGA
1 AGAACGTGAGAACGTGAGA
*
18680 AGAACGTGAGAACGTTAGA
1 AGAACGTGAGAACGTGAGA
* *
18699 AAAACGTTAGAACGTG
1 AGAACGTGAGAACGTG
18715 GACGTGAGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 8 0.28
18 1 0.03
19 20 0.69
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15
Consensus pattern (19 bp):
AGAACGTGAGAACGTGAGA
Left flanking sequence: Indices 18163 -- 18662
GAAGAAGCTCGAGAAACAGGCGAAGCAGGGGCTTCCCCAGGAGGCGTTTGAGGCCCTGTTGGCCC
AGGACAACACCACCCCGTCCACCAACACCCCGGTGGCGCCCGGGTACGACTACCACACGCTGCCG
GGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTGAACCCGCA
GTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCTGGCGACCC
CGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCGGGTTCCAG
GACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAAGTGCCGCT
TTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCA
CCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACG
Right flanking sequence: Indices 18715 -- 19214
GACGTGAGACGTGAAACGAGACGTGAAACGAGACCGTGAATACGTGGACGTTGATTAGAACGAAA
TCACGAACGAAATCGTGAACGAAGCGTGAGCTAAACGTGAAAAACGTGAAGGAAAGCGTGAACTA
AACGTGAAAAAACGTGAACTTAACGTGAACGAGAACAACGTGACGCGAGAACAGTTTGAACCACA
GCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAGTCACCCGCCCGGGAACTGCCTGGCA
GAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTTATTAGGTGGCCAGCGGAGCTGGCCT
GTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCA
GGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGA
TTGTCCTTGGAATGTCGTCTCGTTGCGGGACCTTTGTTTCTGCAC
Found at i:18737 original size:12 final size:12
Alignment explanation
Indices: 18720--18754 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
18710 ACGTGGACGT
18720 GAGACGTGAAAC
1 GAGACGTGAAAC
18732 GAGACGTGAAAC
1 GAGACGTGAAAC
18744 GAGACCGTGAA
1 GAGA-CGTGAA
18755 TACGTGGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.40, C:0.17, G:0.34, T:0.09
Consensus pattern (12 bp):
GAGACGTGAAAC
Left flanking sequence: Indices 18220 -- 18719
GTTGGCCCAGGACAACACCACCCCGTCCACCAACACCCCGGTGGCGCCCGGGTACGACTACCACA
CGCTGCCGGGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTG
AACCCGCAGTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCT
GGCGACCCCGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCG
GGTTCCAGGACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAA
GTGCCGCTTTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAA
GCTAGGCACCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACGAGAACGTGGACG
TGAGAAGAACGTGAGAACGTTAGAAAAACGTTAGAACGTGGACGT
Right flanking sequence: Indices 18755 -- 19254
TACGTGGACGTTGATTAGAACGAAATCACGAACGAAATCGTGAACGAAGCGTGAGCTAAACGTGA
AAAACGTGAAGGAAAGCGTGAACTAAACGTGAAAAAACGTGAACTTAACGTGAACGAGAACAACG
TGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAG
TCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTT
ATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTG
AGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGCTCATGTGG
GGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGGACCTTTGTTTC
TGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGT
Found at i:18799 original size:12 final size:11
Alignment explanation
Indices: 18784--18876 Score: 75
Period size: 11 Copynumber: 8.5 Consensus size: 11
18774 ACGAAATCAC
18784 GAACGAAATCGT
1 GAACGAAA-CGT
*
18796 GAACGAAGCGT
1 GAACGAAACGT
* *
18807 GAGCTAAACGT
1 GAACGAAACGT
18818 GAA--AAACGT
1 GAACGAAACGT
*
18827 GAAGGAAAGCGT
1 GAACGAAA-CGT
*
18839 GAACTAAACGT
1 GAACGAAACGT
*
18850 GAA-AAAACGT
1 GAACGAAACGT
**
18860 GAACTTAACGT
1 GAACGAAACGT
18871 GAACGA
1 GAACGA
18877 GAACAACGTG
Statistics
Matches: 65, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
9 9 0.14
10 9 0.14
11 31 0.48
12 16 0.25
ACGTcount: A:0.44, C:0.15, G:0.27, T:0.14
Consensus pattern (11 bp):
GAACGAAACGT
Left flanking sequence: Indices 18284 -- 18783
ACGCTGCCGGGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCT
GAACCCGCAGTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGC
TGGCGACCCCGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGC
GGGTTCCAGGACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAA
AGTGCCGCTTTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAA
AGCTAGGCACCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACGAGAACGTGGAC
GTGAGAAGAACGTGAGAACGTTAGAAAAACGTTAGAACGTGGACGTGAGACGTGAAACGAGACGT
GAAACGAGACCGTGAATACGTGGACGTTGATTAGAACGAAATCAC
Right flanking sequence: Indices 18877 -- 19376
GAACAACGTGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCC
CAAAGAAGTCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGGGTA
TGTAATTTATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACAGGG
TAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGC
TCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGGACC
TTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGAGACCCCA
CCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGACATTGTC
GTGTGCGTTGGGCATTGTTCTCGGCCAGGTGGATCGAGCACAGCC
Found at i:18860 original size:21 final size:22
Alignment explanation
Indices: 18812--18873 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
18802 AGCGTGAGCT
18812 AAACGTGAA--AAACGTGAAGGA
1 AAACGTGAACTAAACGTGAA-GA
*
18833 AAGCGTGAACTAAACGTGAA-A
1 AAACGTGAACTAAACGTGAAGA
*
18854 AAACGTGAACTTAACGTGAA
1 AAACGTGAACTAAACGTGAA
18874 CGAGAACAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 27 0.75
23 9 0.25
ACGTcount: A:0.48, C:0.13, G:0.24, T:0.15
Consensus pattern (22 bp):
AAACGTGAACTAAACGTGAAGA
Left flanking sequence: Indices 18312 -- 18811
TTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTGAACCCGCAGTTTGCCTTGGCCCCGAAC
CTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCTGGCGACCCCGTTTGACGCCCACGCGCC
GGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCGGGTTCCAGGACGACTACGGCGACGACT
TTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAAGTGCCGCTTTTCACGGCCTAGGGATGC
AACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCACCGGGCTGGCAGTGGCTCT
GGCATTCGAAGCACGAGATGAGAACGAGAACGTGGACGTGAGAAGAACGTGAGAACGTTAGAAAA
ACGTTAGAACGTGGACGTGAGACGTGAAACGAGACGTGAAACGAGACCGTGAATACGTGGACGTT
GATTAGAACGAAATCACGAACGAAATCGTGAACGAAGCGTGAGCT
Right flanking sequence: Indices 18874 -- 19373
CGAGAACAACGTGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGAC
GCCCAAAGAAGTCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGG
GTATGTAATTTATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACA
GGGTAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTG
GGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGG
ACCTTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGAGACC
CCACCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGACATT
GTCGTGTGCGTTGGGCATTGTTCTCGGCCAGGTGGATCGAGCACA
Found at i:18874 original size:32 final size:32
Alignment explanation
Indices: 18793--18863 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 32
18783 CGAACGAAAT
*
18793 CGTGAACG-AAGCGTGAGCTAAACGTGAAAAA
1 CGTGAACGAAAGCGTGAACTAAACGTGAAAAA
*
18824 CGTGAAGGAAAGCGTGAACTAAACGTGAAAAAA
1 CGTGAACGAAAGCGTGAACTAAACGTG-AAAAA
18857 CGTGAAC
1 CGTGAAC
18864 TTAACGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 7 0.20
32 17 0.49
33 11 0.31
ACGTcount: A:0.44, C:0.15, G:0.28, T:0.13
Consensus pattern (32 bp):
CGTGAACGAAAGCGTGAACTAAACGTGAAAAA
Left flanking sequence: Indices 18293 -- 18792
GGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTGAACCCGCA
GTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCTGGCGACCC
CGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCGGGTTCCAG
GACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAAGTGCCGCT
TTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCA
CCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACGAGAACGTGGACGTGAGAAGA
ACGTGAGAACGTTAGAAAAACGTTAGAACGTGGACGTGAGACGTGAAACGAGACGTGAAACGAGA
CCGTGAATACGTGGACGTTGATTAGAACGAAATCACGAACGAAAT
Right flanking sequence: Indices 18864 -- 19363
TTAACGTGAACGAGAACAACGTGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCG
AATGCTGGACGCCCAAAGAAGTCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATG
AAACTATTGGGTATGTAATTTATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTT
GAAAATCACAGGGTAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAG
GCGTGGGTTGGGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTC
TCGTTGCGGGACCTTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAG
TAGCGAGACCCCACCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGG
GGAAGACATTGTCGTGTGCGTTGGGCATTGTTCTCGGCCAGGTGG
Found at i:19106 original size:9 final size:9
Alignment explanation
Indices: 19081--19129 Score: 80
Period size: 9 Copynumber: 5.2 Consensus size: 9
19071 GTAGGCGTGA
19081 GGCAGGCGT
1 GGCAGGCGT
19090 GAGGCAGGCGT
1 --GGCAGGCGT
19101 GGCAGGCGT
1 GGCAGGCGT
19110 GGCAGGCGT
1 GGCAGGCGT
19119 GGCAGGCGT
1 GGCAGGCGT
19128 GG
1 GG
19130 GTTGGGCTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 29 0.76
11 9 0.24
ACGTcount: A:0.12, C:0.20, G:0.57, T:0.10
Consensus pattern (9 bp):
GGCAGGCGT
Left flanking sequence: Indices 18581 -- 19080
CTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCACCGGGCTGGCAGTGGCTCTGGCATTCGA
AGCACGAGATGAGAACGAGAACGTGGACGTGAGAAGAACGTGAGAACGTTAGAAAAACGTTAGAA
CGTGGACGTGAGACGTGAAACGAGACGTGAAACGAGACCGTGAATACGTGGACGTTGATTAGAAC
GAAATCACGAACGAAATCGTGAACGAAGCGTGAGCTAAACGTGAAAAACGTGAAGGAAAGCGTGA
ACTAAACGTGAAAAAACGTGAACTTAACGTGAACGAGAACAACGTGACGCGAGAACAGTTTGAAC
CACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAGTCACCCGCCCGGGAACTGCCT
GGCAGAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTTATTAGGTGGCCAGCGGAGCTG
GCCTGTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTGA
Right flanking sequence: Indices 19130 -- 19629
GTTGGGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTG
CGGGACCTTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGA
GACCCCACCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGA
CATTGTCGTGTGCGTTGGGCATTGTTCTCGGCCAGGTGGATCGAGCACAGCCTCGCCTCGATCTC
TGGGCACAAAGGGCCACAAAGGGCCACAAGAAGGTGCAGCGGGCATGGTGGACGCGTGTAGAGCC
AGCTGGGAATTTTTTTTGTGTGTGAGAAGCGTCGTTCTCGAGTGTTGTTCGTCTTAAGTCGTGAC
GAGATAGGGAATAACGGGCGGACAATGTCGCGGTGTCGCGTCGAGTCGGCCCTCGGAGTTAAGGG
TTTGGAGGGGCGGAATAGGGGCAGGGCGAGCGCGACGGGGGTATT
Found at i:19409 original size:10 final size:10
Alignment explanation
Indices: 19394--19418 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
19384 GATCTCTGGG
19394 CACAAAGGGC
1 CACAAAGGGC
19404 CACAAAGGGC
1 CACAAAGGGC
19414 CACAA
1 CACAA
19419 GAAGGTGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00
Consensus pattern (10 bp):
CACAAAGGGC
Left flanking sequence: Indices 18894 -- 19393
AACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAGTCACCCGCC
CGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTTATTAGGTGG
CCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTGAGGCAGGCG
TGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGCTCATGTGGGGCTGATCA
GGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGGACCTTTGTTTCTGCACTGGT
GGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGAGACCCCACCCGCTAGCCGCTATTG
TCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGACATTGTCGTGTGCGTTGGGCATTG
TTCTCGGCCAGGTGGATCGAGCACAGCCTCGCCTCGATCTCTGGG
Right flanking sequence: Indices 19419 -- 19918
GAAGGTGCAGCGGGCATGGTGGACGCGTGTAGAGCCAGCTGGGAATTTTTTTTGTGTGTGAGAAG
CGTCGTTCTCGAGTGTTGTTCGTCTTAAGTCGTGACGAGATAGGGAATAACGGGCGGACAATGTC
GCGGTGTCGCGTCGAGTCGGCCCTCGGAGTTAAGGGTTTGGAGGGGCGGAATAGGGGCAGGGCGA
GCGCGACGGGGGTATTTGGGGCCTGGAGAATTGCGTGTAGGTTTTGGACGCCCGAAGGTTTTCAA
AGTGGAGAGGGGAAGACTCGGGAAGTCAGCTGAGTGTTCGGAAAATTGACCGTGATACGAGTGTC
AAAAATGTAATCTACTAGAGCAATTAATCCACTAGACGCTCTCACAATTGTGCCTACTGACAGCC
CGAGAAATCTGGCCCAGAACTTTGGTCCTAAAAATTAGCCCAAGAAAATAGAAAGCCCTATTTTT
AACCTTATAAACCCGTGGCTCGGCGTTTCGTACACCAACCAAAGC
Done.