sallet_3.scaffold.fasta.s43.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold10
Parameters: 2 7 7 80 10 50 500
Length:  234117

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--453	153	3.0	153	95	0	789	18	31	26	22	1.97
1--507	153	3.3	152	89	2	725	18	30	27	23	1.98
1424--1486	27	2.3	27	94	0	108	41	25	19	14	1.89
40809--40847	18	2.2	18	90	0	60	25	23	46	5	1.73
40931--41010	36	2.2	36	86	0	115	28	22	25	23	1.99
41607--41683	12	6.4	12	87	0	109	23	18	33	24	1.96
41607--41683	24	3.2	24	94	0	127	23	18	33	24	1.96
72341--72379	11	2.9	15	71	28	50	33	5	33	28	1.79
72582--72628	25	1.9	25	91	4	78	8	48	21	21	1.76
74978--75039	10	6.4	10	94	5	110	30	50	0	19	1.48
74978--75039	29	2.1	29	94	5	108	30	50	0	19	1.48
75653--75692	16	2.4	17	87	4	55	17	42	20	20	1.89
75717--75748	15	2.1	15	94	0	55	12	46	12	28	1.78
76488--76562	39	1.9	39	94	0	132	44	38	4	13	1.62
76456--76563	18	5.6	21	74	19	92	42	37	7	12	1.72
77896--77920	12	2.1	12	100	0	50	24	16	44	16	1.86
77932--77976	12	3.8	12	96	0	81	22	35	33	8	1.85
77970--78011	15	2.8	15	92	0	75	33	35	21	9	1.86
77970--78040	15	4.9	15	71	10	58	29	32	26	11	1.91
77993--78061	27	2.6	27	90	0	102	27	27	31	13	1.93
78146--78194	15	3.1	15	85	14	55	32	34	20	12	1.90
78126--78183	18	3.2	18	87	0	80	29	32	25	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79000--79077	27	2.8	27	84	5	102	15	28	38	17	1.91
79115--79158	21	2.1	21	87	8	63	13	45	22	18	1.84
79240--79322	42	2.0	42	87	0	121	16	38	26	18	1.92
80005--80030	9	2.9	9	100	0	52	19	46	23	11	1.82
80674--80722	15	3.1	15	83	11	71	12	12	26	48	1.75
80674--80740	32	2.1	33	91	2	109	14	11	25	47	1.79
80675--80743	18	4.1	17	82	16	90	14	11	26	47	1.78
80734--80772	13	3.0	13	100	0	78	15	7	23	53	1.67
80780--80829	18	2.8	18	93	3	84	12	14	32	42	1.82
80760--80849	18	5.1	19	81	9	75	14	13	27	44	1.82
93701--93738	12	3.2	12	96	3	69	18	23	44	13	1.85
102110--102193	23	3.7	23	95	0	141	26	52	4	16	1.63
105948--105979	14	2.4	14	94	5	57	21	6	46	25	1.74
106569--106593	13	1.9	13	100	0	50	28	32	24	16	1.96
108006--108063	21	2.7	21	89	2	89	36	5	32	25	1.78
108007--108079	22	3.3	22	82	3	85	38	6	30	24	1.81
108104--108211	35	3.0	35	95	4	189	36	8	21	34	1.83
108371--108400	15	2.0	15	100	0	60	13	60	6	20	1.55
113572--113624	12	4.4	12	87	0	61	9	37	39	13	1.77
113572--113624	24	2.2	24	89	0	79	9	37	39	13	1.77
114252--114303	8	6.5	8	95	0	95	23	0	50	26	1.50
114261--114333	24	2.9	26	82	15	84	19	0	50	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114403--114455	10	5.2	10	80	13	63	0	9	54	35	1.33
114403--114455	20	2.6	21	84	3	81	0	9	54	35	1.33
114640--114664	10	2.5	10	100	0	50	0	8	52	40	1.31
115353--115399	17	2.6	17	80	19	51	2	21	53	23	1.57
115641--115715	15	5.0	15	79	6	89	32	38	16	13	1.87
116376--116551	80	2.2	82	89	2	266	27	25	29	18	1.98
116571--116615	15	3.0	15	90	0	72	17	35	15	31	1.92
117465--117498	6	5.7	6	100	0	68	14	17	50	17	1.79
119635--119704	9	7.8	9	93	0	95	20	40	12	27	1.88
127510--127576	27	2.5	27	80	0	80	14	14	40	29	1.87
141564--141590	14	1.9	14	100	0	54	59	7	11	22	1.56
145424--145508	43	2.0	43	92	0	143	21	31	20	27	1.97
145427--145497	22	3.3	22	67	11	65	21	33	21	23	1.97
145437--145509	22	3.4	22	70	11	69	21	30	20	27	1.98
145741--145766	12	2.2	12	100	0	52	0	23	34	42	1.54
151971--152033	24	2.6	24	79	0	63	6	23	50	19	1.70
168690--168719	10	3.0	10	100	0	60	30	20	30	20	1.97
174240--174270	15	2.1	15	93	0	53	9	22	41	25	1.84
175288--175315	10	2.8	10	100	0	56	28	32	7	32	1.84
178538--178582	9	5.0	9	86	0	63	17	31	46	4	1.68
180218--180252	12	2.9	12	91	0	52	11	34	42	11	1.77
180898--180938	13	3.2	13	89	0	64	19	0	56	24	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181344--181374	11	2.8	11	95	0	53	38	54	0	6	1.26
184185--184239	23	2.3	24	78	3	58	27	30	18	23	1.97
185737--185797	18	3.3	18	90	2	86	32	49	4	13	1.63
189640--189765	14	9.2	14	83	12	156	0	0	49	50	1.06
189645--189811	6	28.0	6	81	14	141	0	3	44	50	1.23
189645--189793	20	7.6	20	79	15	159	0	2	46	51	1.17
195635--196146	144	3.6	144	87	1	686	22	25	30	21	1.98
195420--196173	288	2.6	294	78	5	801	22	24	31	21	1.98
210703--210847	6	24.0	6	84	14	147	0	3	45	51	1.18
210703--210812	26	4.2	26	97	1	202	0	0	49	50	1.00
212873--212940	21	3.2	21	95	0	118	20	25	22	32	1.98
212873--212951	21	3.8	21	93	1	115	20	26	21	31	1.98
219125--219154	15	2.0	15	100	0	60	26	26	26	20	1.99
219920--219944	12	2.1	12	100	0	50	24	16	44	16	1.86
221391--221436	9	5.4	9	75	15	53	36	30	32	0	1.58
221390--221436	24	2.0	24	86	0	67	38	29	31	0	1.58
227106--227142	10	3.7	10	88	0	56	18	27	10	43	1.83
229982--230016	18	1.9	18	88	0	52	5	42	31	20	1.75
230237--230277	13	3.2	13	100	0	82	21	14	46	17	1.84
232557--232736	63	2.9	63	80	5	168	26	25	24	24	2.00
232594--232755	63	2.6	63	81	4	184	24	27	24	24	2.00

Tables:   1

The End!