Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold10
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 234117
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:279 original size:153 final size:153
Alignment explanation
Indices: 1--453 Score: 789
Period size: 153 Copynumber: 3.0 Consensus size: 153
1 TGGCTCGGGTATTGTTGACGTGACCACCGACTCCAACGGGTCCTTGGTCACTTCGACGTCCTCTT
1 TGGCTCGGGTATTGTTGACGTGACCACCGACTCCAACGGGTCCTTGGTCACTTCGACGTCCTCTT
*
66 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACCGAGTACACCACCACTTGGACCACCACT
66 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACT
131 GGTGCTGATGGTAAGCCCACGAC
131 GGTGCTGATGGTAAGCCCACGAC
154 TGGCTCGGGTATTGTTGACGTGACCACCGACTCCAACGGGTCCTTGGTCACTTCGACGTCCTCTT
1 TGGCTCGGGTATTGTTGACGTGACCACCGACTCCAACGGGTCCTTGGTCACTTCGACGTCCTCTT
* *
219 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGTACTGAGTACACCACCACCTGGACCACCACT
66 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACT
284 GGTGCTGATGGTAAGCCCACGAC
131 GGTGCTGATGGTAAGCCCACGAC
* * ** * * * *
307 TGGCTCGGGTATTGTCGACGTCATTACTGACTCTAACGGGTCTTTGGTCACTTCGACGTCTTCTT
1 TGGCTCGGGTATTGTTGACGTGACCACCGACTCCAACGGGTCCTTGGTCACTTCGACGTCCTCTT
*
372 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACC
66 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACT
*
437 GGTGCTGACGGTAAGCC
131 GGTGCTGATGGTAAGCC
454 TACTACGGGA
Statistics
Matches: 285, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 285 1.00
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.23
Consensus pattern (153 bp):
TGGCTCGGGTATTGTTGACGTGACCACCGACTCCAACGGGTCCTTGGTCACTTCGACGTCCTCTT
ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACT
GGTGCTGATGGTAAGCCCACGAC
Left flanking sequence: None
Right flanking sequence: Indices 454 -- 953
TACTACGGGAACTGGGATCGTTGATGTCACCACAGACCTGCACGGGTCCTTGGTTACAACCACGT
CGGTCGATGTGTTGCCTTGCCCTGTGTGTACGGCGTACCCCACTACTTGGACGACTACCGGTGCT
GATGGCAAGCCCACTGTCGGGACAGGGATTGTTGATGTGACGACCAACTCACAAGGCTCCATTGT
TACTTCGACCAAGTCTCAAGGAGGATGCCTCGTGTGCACTCAGTATACCACTACGTGGACCTCCT
CTGGTGACAACGGCCGCCCCACCACCGGTGCCGGCATTATCGACGTGACCACTGACGCCAACGGG
AACGTGATCACGTCAACAATGCAGTTGCCGTACACGGTGACCGCGTCGTGCCATGTGTGCGAGAC
CAAGCCCACGGTGGTGACCACGGTCATCGACTCTACCGTCACCATTACCCAAGGGTGTGACGTCA
TCGTGACCACCAACGCCGACGGGTCTCTCTACACCACCACCGAGT
Found at i:519 original size:153 final size:152
Alignment explanation
Indices: 1--507 Score: 725
Period size: 153 Copynumber: 3.3 Consensus size: 152
* *
1 TGGCTCGGGTATTGTTGACGTGACCACCGA-CTCCAACGGGTCCTTGGTCACTTCGACGTCCTCT
1 TGGCTCGGGTATTGTTGACGTCACCACAGACCT-C-ACGGGTCCTTGGTCACTTCGACGTCCTCT
*
65 TACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACCGAGTACACCACCACTTGGACCACCAC
64 TACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCAC
130 TGGTGCTGATGGTAAGCCCACGAC
129 TGGTGCTGATGGTAAGCCCACGAC
* *
154 TGGCTCGGGTATTGTTGACGTGACCACCGA-CTCCAACGGGTCCTTGGTCACTTCGACGTCCTCT
1 TGGCTCGGGTATTGTTGACGTCACCACAGACCT-C-ACGGGTCCTTGGTCACTTCGACGTCCTCT
* *
218 TACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGTACTGAGTACACCACCACCTGGACCACCAC
64 TACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCAC
283 TGGTGCTGATGGTAAGCCCACGAC
129 TGGTGCTGATGGTAAGCCCACGAC
* ** * * * *
307 TGGCTCGGGTATTGTCGACGTCATTACTGACTCTAACGGGTCTTTGGTCACTTCGACGTCTTCTT
1 TGGCTCGGGTATTGTTGACGTCACCACAGAC-CTCACGGGTCCTTGGTCACTTCGACGTCCTCTT
*
372 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACC
65 ACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACT
* * *
437 GGTGCTGACGGTAAGCCTACTAC
130 GGTGCTGATGGTAAGCCCACGAC
* * *
460 GGGAACT-GGG-ATCGTTGATGTCACCACAGACCTGCACGGGTCCTTGGT
1 TGG--CTCGGGTATTGTTGACGTCACCACAGACCT-CACGGGTCCTTGGT
508 TACAACCACG
Statistics
Matches: 323, Mismatches: 26, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
152 2 0.01
153 314 0.97
154 3 0.01
155 4 0.01
ACGTcount: A:0.19, C:0.31, G:0.27, T:0.23
Consensus pattern (152 bp):
TGGCTCGGGTATTGTTGACGTCACCACAGACCTCACGGGTCCTTGGTCACTTCGACGTCCTCTTA
CCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACTG
GTGCTGATGGTAAGCCCACGAC
Left flanking sequence: None
Right flanking sequence: Indices 508 -- 1007
TACAACCACGTCGGTCGATGTGTTGCCTTGCCCTGTGTGTACGGCGTACCCCACTACTTGGACGA
CTACCGGTGCTGATGGCAAGCCCACTGTCGGGACAGGGATTGTTGATGTGACGACCAACTCACAA
GGCTCCATTGTTACTTCGACCAAGTCTCAAGGAGGATGCCTCGTGTGCACTCAGTATACCACTAC
GTGGACCTCCTCTGGTGACAACGGCCGCCCCACCACCGGTGCCGGCATTATCGACGTGACCACTG
ACGCCAACGGGAACGTGATCACGTCAACAATGCAGTTGCCGTACACGGTGACCGCGTCGTGCCAT
GTGTGCGAGACCAAGCCCACGGTGGTGACCACGGTCATCGACTCTACCGTCACCATTACCCAAGG
GTGTGACGTCATCGTGACCACCAACGCCGACGGGTCTCTCTACACCACCACCGAGTACGACGGCG
TACAATCGACAGTTGCGGGTTACTCCGCTGTTTCTTCAGGTGACG
Found at i:1464 original size:27 final size:27
Alignment explanation
Indices: 1424--1486 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
1414 CTGCCACTCC
* *
1424 AGCACTCAACAACGAGTGCTTAGAACG
1 AGCACTCAAAAACGAGTACTTAGAACG
1451 AGCACTCAAAAACGAGTACTTAGAACG
1 AGCACTCAAAAACGAGTACTTAGAACG
1478 AGCACTCAA
1 AGCACTCAA
1487 GGTCACTCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.14
Consensus pattern (27 bp):
AGCACTCAAAAACGAGTACTTAGAACG
Left flanking sequence: Indices 924 -- 1423
CCGACGGGTCTCTCTACACCACCACCGAGTACGACGGCGTACAATCGACAGTTGCGGGTTACTCC
GCTGTTTCTTCAGGTGACGTGGCCCTTTCTCTGGCGGTGGTGATTGCCTCCACCGTGGCTGGCGA
TGCCACCACGTACACTCTTCCCTTGGGGACCACCACCATTCCTGAGGCCCAAGTTTCTTCGTACC
TCGGCGCCAACCTTCCGGGTGCCGTTGTTTCTTCCACCAACGCCGACGGGGATGTTGTTGTTTCC
ACGGTGGCGCCGGTTTCTCCTGACACGACGTCGCTGCCTTCGATTGTTGAAGGAGGCGCGTCGTC
GATCACCCGCTCCAAGATTTCGGTCGTGGTTGCGGGTATCGTTGCTGTTTTGCTTTTGTAAGGCG
TTTATACCCCGTTGTTTCGTTTATACGTGTTAATACACCCTTTGTATGATAACCACTGTGTAGGT
CTCGTGCAGACGCGTCGCAGGCTGGATCGATTGGCCTGCCACTCC
Right flanking sequence: Indices 1487 -- 1986
GGTCACTCACACTGATACACTACTTGGTATACACTCTGCCTTATCTCTACCACGCAAACACTTTG
AACGCCTCTTTTCAGCTCCACCAAACTCCGCCCAAATCCTCCCAACTCCACCAAAACCCACCCAG
GACCATTCACCTCCCCATTATAGCGTAGAAGGACGCAACCAGTGAACCCACACGCCTTACCGCGC
CACCTCATCCGTTGCGCCACCCGTCCACCTCCTTGGACCACATCCGGTTGCGAGCCCGCATAGTT
CCAGGCACTACAACAACCCGCGACCACGATAACGGCAGCGCTACCCACCCCCGCCATGTCGACCT
GTGCGTACAAACGGACACTGATCATCGGGCGTGGCAAGTTTGGCATTGTCTACAAGGGCCACCAC
AAGCAGACCAAGCAGAATGTCGCCATCAAAGTGCTCAACCTCGACACCGAGGAGGACGAGATCAC
CGACGTGCAACAGGAGATCCAGTTTTTGGCAGAGCTCCGCAACGT
Found at i:40847 original size:18 final size:18
Alignment explanation
Indices: 40809--40847 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
40799 CACAGGCGCC
**
40809 GGACCAGCAGACGGGTTG
1 GGACCAGCAGACGGGACG
40827 GGACCAGCAGACGGGACG
1 GGACCAGCAGACGGGACG
40845 GGA
1 GGA
40848 GCCTTGGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.46, T:0.05
Consensus pattern (18 bp):
GGACCAGCAGACGGGACG
Left flanking sequence: Indices 40309 -- 40808
GGGGCGGCTATCCCGGTCCAGCTACTACATTCGCCACAATTGTGATCGGTTGCTGCATAGGGTTG
ACCAGACCGTTTGCGCACAACCGAAATAGCAATCGATCTCGAGAAAGGAAGCTAGACCCGAACGC
CCCGGAGTTGCTCGACGGGGTTATCGTGCCCCCACAGCCAACGGTGAGTTTGACAGCATACACAT
TGCGTTGCGTTGACTTTGACAGCAAGATTGCTCCCGCGTATCGTTGGCTGACAATCGTTTCCTGT
GTCAGCGGACTAAACGTCGTCATACTACAGCGCGCGTACGCGTAACGGGTTAAAGGTCGAAAAGT
ATATTACCGAAAGGGAACAAAAGTAACTAAACGAAAGTAGAATCACAACAATCCGGCGACCAAGG
CGAGGGCACCGGCGACCTGGGGCAAGCCGTAGTTGGCAGCAGCACCCGAGTAGGTCGAGATCACC
GCGGGGCCCGTCGTAGGCACAGGAGCCTTGGATGGCACAGGCGCC
Right flanking sequence: Indices 40848 -- 41347
GCCTTGGTGGGGTTCACGGGACTGGTGACCACAGTGACACCGGAAGGAGGAACCACAGGCGCTTT
CGAGGGCTTGGTGTCGGGACCACCAGTAGTGATGGGATTCAAAGTGACAGTCTTACCACTAGTAG
TAATGGGGTTCACAGTGACAGTCTTGCCACCAGCACCAGGGGAAGTGGGCGCAGGCTTGACCGTG
GGGTATAAGGTGATCGTGGTGGGGGCAGGTGGGGGCACACCCGTGGTCGGGACCACGCAGTGGTG
GTCGGTGCACTTCTCCACAGGCAAGGTGACGGTAACGGTGGGCTTGGGGGGAGCACACTTGTCCT
CGTGGCAAACCACGTAGACGGTAGTCTTGGCCGAGGGGGCCGGGTGCTGGACACACTGGGCAGCT
CCACACTTGACGGTGACTGTCACCGTGGGGGCACAGGCGTTGCAATCGTCGGTGGGAACGCCGTG
CACGGTGGTCACACCAGTCTCGGTGGCGGAGTTAACCCCAGTGTT
Found at i:40978 original size:36 final size:36
Alignment explanation
Indices: 40931--41010 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
40921 TGGTGTCGGG
*
40931 ACCACCAGTAGTGATGGGATTCAAAGTGACAGTCTT
1 ACCACCAGTAGTAATGGGATTCAAAGTGACAGTCTT
* * *
40967 ACCACTAGTAGTAATGGGGTTCACAGTGACAGTCTT
1 ACCACCAGTAGTAATGGGATTCAAAGTGACAGTCTT
*
41003 GCCACCAG
1 ACCACCAG
41011 CACCAGGGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (36 bp):
ACCACCAGTAGTAATGGGATTCAAAGTGACAGTCTT
Left flanking sequence: Indices 40431 -- 40930
CCGAACGCCCCGGAGTTGCTCGACGGGGTTATCGTGCCCCCACAGCCAACGGTGAGTTTGACAGC
ATACACATTGCGTTGCGTTGACTTTGACAGCAAGATTGCTCCCGCGTATCGTTGGCTGACAATCG
TTTCCTGTGTCAGCGGACTAAACGTCGTCATACTACAGCGCGCGTACGCGTAACGGGTTAAAGGT
CGAAAAGTATATTACCGAAAGGGAACAAAAGTAACTAAACGAAAGTAGAATCACAACAATCCGGC
GACCAAGGCGAGGGCACCGGCGACCTGGGGCAAGCCGTAGTTGGCAGCAGCACCCGAGTAGGTCG
AGATCACCGCGGGGCCCGTCGTAGGCACAGGAGCCTTGGATGGCACAGGCGCCGGACCAGCAGAC
GGGTTGGGACCAGCAGACGGGACGGGAGCCTTGGTGGGGTTCACGGGACTGGTGACCACAGTGAC
ACCGGAAGGAGGAACCACAGGCGCTTTCGAGGGCTTGGTGTCGGG
Right flanking sequence: Indices 41011 -- 41510
CACCAGGGGAAGTGGGCGCAGGCTTGACCGTGGGGTATAAGGTGATCGTGGTGGGGGCAGGTGGG
GGCACACCCGTGGTCGGGACCACGCAGTGGTGGTCGGTGCACTTCTCCACAGGCAAGGTGACGGT
AACGGTGGGCTTGGGGGGAGCACACTTGTCCTCGTGGCAAACCACGTAGACGGTAGTCTTGGCCG
AGGGGGCCGGGTGCTGGACACACTGGGCAGCTCCACACTTGACGGTGACTGTCACCGTGGGGGCA
CAGGCGTTGCAATCGTCGGTGGGAACGCCGTGCACGGTGGTCACACCAGTCTCGGTGGCGGAGTT
AACCCCAGTGTTGGTCTCATCGATAATGGTAGAGCGGGTACCAGAGCCACCGTCGGTAGCGGAGT
TGGTGCCGGTGTTGCCGCCAGAGCCAGTAGCGGTGTTCGAGTTGTTGCCATCAGTGGCCGAGTTC
GTGCCAGTGTTCGTAGCAGAACCAGTGTCAGTGCCCGAGTTGATG
Found at i:41634 original size:12 final size:12
Alignment explanation
Indices: 41607--41683 Score: 109
Period size: 12 Copynumber: 6.4 Consensus size: 12
41597 GGTAGCCGAC
* *
41607 CCAGTGTTAGAA
1 CCAGTGTTGGAG
*
41619 CCAGTATTGGAG
1 CCAGTGTTGGAG
* *
41631 CCAGTGTTAGAA
1 CCAGTGTTGGAG
41643 CCAGTGTTGGAG
1 CCAGTGTTGGAG
41655 CCAGTGTTGGAG
1 CCAGTGTTGGAG
41667 CCAGTGTTGGAG
1 CCAGTGTTGGAG
41679 CCAGT
1 CCAGT
41684 CTCAGTAGCA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 57 1.00
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (12 bp):
CCAGTGTTGGAG
Left flanking sequence: Indices 41107 -- 41606
GGTCGGTGCACTTCTCCACAGGCAAGGTGACGGTAACGGTGGGCTTGGGGGGAGCACACTTGTCC
TCGTGGCAAACCACGTAGACGGTAGTCTTGGCCGAGGGGGCCGGGTGCTGGACACACTGGGCAGC
TCCACACTTGACGGTGACTGTCACCGTGGGGGCACAGGCGTTGCAATCGTCGGTGGGAACGCCGT
GCACGGTGGTCACACCAGTCTCGGTGGCGGAGTTAACCCCAGTGTTGGTCTCATCGATAATGGTA
GAGCGGGTACCAGAGCCACCGTCGGTAGCGGAGTTGGTGCCGGTGTTGCCGCCAGAGCCAGTAGC
GGTGTTCGAGTTGTTGCCATCAGTGGCCGAGTTCGTGCCAGTGTTCGTAGCAGAACCAGTGTCAG
TGCCCGAGTTGATGCCAGAGAAAGAGTCGCTGCCGGTGCCAGTAGCCGACCCAGTGTTGGAGCCG
GTCTCGGTGCCAGTAACGCTGCCAGTGTTGGAGTCGGTAGCCGAC
Right flanking sequence: Indices 41684 -- 42183
CTCAGTAGCAGAATTGGTACCAGTGGCAGTGTCAGTGGCAGAACCAGTGTTGGACCCGGTGTCAG
TCTCAGTGGCAGAGTTGGTGCCAGTGTTGGTGTCAGTAGCAGAGTCAGTGGGGGTGGCTGTCTCG
GTGGAGGACGACGACGACGCGGTCGAGGTGGGCGGGGTCACAGTAGAGGTACACTCACCACAGTT
GGCGGGAGGGTCAGAGGAAGGAGGAGCACCGTTGTATCTGATAGCATTGAGCAAGGGCACGCTGA
CGCCAATGAACAAGTGGGAAACCACCTCGAAGTTGTCCTCGTTGTACCCGGGTCCGATCAACACC
TGCTGCGACAAGGTGTTCAAGGGACCGCCGTAGAGAGTCAAGATACCGGTACCAGCGTCGTACTC
GTGGTTGAAAACGGGGGTGGTCATACCGATGATGTTCCCGTTACCAAAGCCTGCCACAGTGTAGG
GGTTAGCAGCGGTGACCGAAGTCAACAATAACTGGGCGCTGGGGT
Found at i:41634 original size:24 final size:24
Alignment explanation
Indices: 41607--41683 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
41597 GGTAGCCGAC
*
41607 CCAGTGTTAGAACCAGTATTGGAG
1 CCAGTGTTAGAACCAGTGTTGGAG
41631 CCAGTGTTAGAACCAGTGTTGGAG
1 CCAGTGTTAGAACCAGTGTTGGAG
* *
41655 CCAGTGTTGGAGCCAGTGTTGGAG
1 CCAGTGTTAGAACCAGTGTTGGAG
41679 CCAGT
1 CCAGT
41684 CTCAGTAGCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (24 bp):
CCAGTGTTAGAACCAGTGTTGGAG
Left flanking sequence: Indices 41107 -- 41606
GGTCGGTGCACTTCTCCACAGGCAAGGTGACGGTAACGGTGGGCTTGGGGGGAGCACACTTGTCC
TCGTGGCAAACCACGTAGACGGTAGTCTTGGCCGAGGGGGCCGGGTGCTGGACACACTGGGCAGC
TCCACACTTGACGGTGACTGTCACCGTGGGGGCACAGGCGTTGCAATCGTCGGTGGGAACGCCGT
GCACGGTGGTCACACCAGTCTCGGTGGCGGAGTTAACCCCAGTGTTGGTCTCATCGATAATGGTA
GAGCGGGTACCAGAGCCACCGTCGGTAGCGGAGTTGGTGCCGGTGTTGCCGCCAGAGCCAGTAGC
GGTGTTCGAGTTGTTGCCATCAGTGGCCGAGTTCGTGCCAGTGTTCGTAGCAGAACCAGTGTCAG
TGCCCGAGTTGATGCCAGAGAAAGAGTCGCTGCCGGTGCCAGTAGCCGACCCAGTGTTGGAGCCG
GTCTCGGTGCCAGTAACGCTGCCAGTGTTGGAGTCGGTAGCCGAC
Right flanking sequence: Indices 41684 -- 42183
CTCAGTAGCAGAATTGGTACCAGTGGCAGTGTCAGTGGCAGAACCAGTGTTGGACCCGGTGTCAG
TCTCAGTGGCAGAGTTGGTGCCAGTGTTGGTGTCAGTAGCAGAGTCAGTGGGGGTGGCTGTCTCG
GTGGAGGACGACGACGACGCGGTCGAGGTGGGCGGGGTCACAGTAGAGGTACACTCACCACAGTT
GGCGGGAGGGTCAGAGGAAGGAGGAGCACCGTTGTATCTGATAGCATTGAGCAAGGGCACGCTGA
CGCCAATGAACAAGTGGGAAACCACCTCGAAGTTGTCCTCGTTGTACCCGGGTCCGATCAACACC
TGCTGCGACAAGGTGTTCAAGGGACCGCCGTAGAGAGTCAAGATACCGGTACCAGCGTCGTACTC
GTGGTTGAAAACGGGGGTGGTCATACCGATGATGTTCCCGTTACCAAAGCCTGCCACAGTGTAGG
GGTTAGCAGCGGTGACCGAAGTCAACAATAACTGGGCGCTGGGGT
Found at i:72378 original size:15 final size:15
Alignment explanation
Indices: 72341--72379 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 15
72331 TGGTTGGCGT
72341 GTATGTGAGATGACA
1 GTATGTGAGATGACA
72356 GTA--T--GATGACA
1 GTATGTGAGATGACA
72367 GTATGTGAGATGA
1 GTATGTGAGATGA
72380 TATCTTAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 8
0.71 0.00 0.29
Matches are distributed among these distances:
11 10 0.50
13 2 0.10
15 8 0.40
ACGTcount: A:0.33, C:0.05, G:0.33, T:0.28
Consensus pattern (15 bp):
GTATGTGAGATGACA
Left flanking sequence: Indices 71841 -- 72340
CCCAGTACAAGGTCAAGGCCGTCGTGTGCCATAAGGGCACCTCGCCCCACACGGGCCACTACGTG
GCGTTTGTGCGCAAGGAGATCGAGGGCCAGGAGAAGTGGGTGTTGTTCAACGACGAGAAGGTGGT
GGAGGTGGACGACGAGACACCGGGCGACATCCGCAACAACGCCTACATCTACGTGTTTGAGCGGG
TGTAAATGGGGATCGATCGATCCATAGCTATAGAGTATAATAAGATAAACACGGCCGGACCAGGC
CCTGGTAACTAGGACGATACATGTAGCTGCAAGGGGTACTGGTTTTGTGTCCCCATGTGGTTGCT
GGCGACCCACGAGGTGTCGTTGCACGGCTGCGCTTGGTTGCTAGCCTTGTAGCAAGTTGGTCCGG
AAGCACGGTTATTTTTAAACTAAGGGTACAAAACGTACAACGGTTAATTTATTCTGGTTGATTGA
TGCTGGATTACGTTTGTGGAAGCAGGGGATCTGAGTGGTTGGCGT
Right flanking sequence: Indices 72380 -- 72879
TATCTTAGAGTTGAGCTCGGTCACATGAAAGAACGTACTACGAATATGACAACTATGTGATTGAA
ATTGCCTTCATCTACTGTATAGACCGAATTCGTCCTGCCTGTGCCAATACAACTCGTTTCGAGTT
AATCGGGAGCAAAAAACTCCAGCCGACCTCCGAAACTCCGATACCCGGCATCCCGAACCTGTGAT
CCCGGTATGCCGAAGCTCCGGTCCCCTCCCTGTGCCGAAGCTCCGTTCCCTCCCCTCCCACCCCT
TCCTGACTCGTCCATGCGGCTCCTCGCCGGAACCGCTCACCGGTTCCGCTGATAAAAATGCAACA
AGCGGCTGCGCGCTTGCAACATCGCCTCGGCCACCACGACGCCCGGAAAATCCCTAGCGCGGCGC
AAAGACTGGTCTCTTCGCAACCCGCACTGACTCCCACTAACCCCCTACCAACCCTCATGCCTCGG
CCTACCCCATTTCCCCGTCTACGATCGCCCGCATTGTGCCAATGA
Found at i:72630 original size:25 final size:25
Alignment explanation
Indices: 72582--72628 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
72572 GATCCCGGTA
72582 TGCCGAAGCTCCGGTCCCCTCCCTG
1 TGCCGAAGCTCCGGTCCCCTCCCTG
*
72607 TGCCGAAGCTCC-GTTCCCTCCC
1 TGCCGAAGCTCCGGTCCCCTCCC
72629 CTCCCACCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.09, C:0.49, G:0.21, T:0.21
Consensus pattern (25 bp):
TGCCGAAGCTCCGGTCCCCTCCCTG
Left flanking sequence: Indices 72082 -- 72581
AAACACGGCCGGACCAGGCCCTGGTAACTAGGACGATACATGTAGCTGCAAGGGGTACTGGTTTT
GTGTCCCCATGTGGTTGCTGGCGACCCACGAGGTGTCGTTGCACGGCTGCGCTTGGTTGCTAGCC
TTGTAGCAAGTTGGTCCGGAAGCACGGTTATTTTTAAACTAAGGGTACAAAACGTACAACGGTTA
ATTTATTCTGGTTGATTGATGCTGGATTACGTTTGTGGAAGCAGGGGATCTGAGTGGTTGGCGTG
TATGTGAGATGACAGTATGATGACAGTATGTGAGATGATATCTTAGAGTTGAGCTCGGTCACATG
AAAGAACGTACTACGAATATGACAACTATGTGATTGAAATTGCCTTCATCTACTGTATAGACCGA
ATTCGTCCTGCCTGTGCCAATACAACTCGTTTCGAGTTAATCGGGAGCAAAAAACTCCAGCCGAC
CTCCGAAACTCCGATACCCGGCATCCCGAACCTGTGATCCCGGTA
Right flanking sequence: Indices 72629 -- 73128
CTCCCACCCCTTCCTGACTCGTCCATGCGGCTCCTCGCCGGAACCGCTCACCGGTTCCGCTGATA
AAAATGCAACAAGCGGCTGCGCGCTTGCAACATCGCCTCGGCCACCACGACGCCCGGAAAATCCC
TAGCGCGGCGCAAAGACTGGTCTCTTCGCAACCCGCACTGACTCCCACTAACCCCCTACCAACCC
TCATGCCTCGGCCTACCCCATTTCCCCGTCTACGATCGCCCGCATTGTGCCAATGATCGACGCTC
GATTACCAACGTGGTCCGAACGCCGTCAAGGCGGGGAAGTTTCTTTTTTTCGCGGAGGGCATCGG
AGCACCCGCCGACAGCAAAGACCGCCAGCGGGTGGTACGAGGCCCCAAAACCTCTGTAGCAGCGT
CCCCTGTAGCCCTCGTCCACCAGCATCCTCCGGAAAAACGCATTATGCGGCCACCAGCAGCTGCG
TCGGCCTCCGGTGCGTTTTCTGATGAGTCATGCATGGTTATATAG
Found at i:75046 original size:10 final size:10
Alignment explanation
Indices: 74978--75039 Score: 110
Period size: 10 Copynumber: 6.4 Consensus size: 10
74968 CATTTCCACT
74978 CATCTCACAC
1 CATCTCACAC
74988 CATCT-ACAC
1 CATCTCACAC
74997 CATCTCACAC
1 CATCTCACAC
75007 CATCTCACAC
1 CATCTCACAC
75017 CATCTCACAC
1 CATCTCACAC
75027 CATC-CACAC
1 CATCTCACAC
75036 CATC
1 CATC
75040 CTCCACCCAC
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
9 18 0.35
10 33 0.65
ACGTcount: A:0.31, C:0.50, G:0.00, T:0.19
Consensus pattern (10 bp):
CATCTCACAC
Left flanking sequence: Indices 74478 -- 74977
TCTGCGAGTCTGTGAAGCTATCAAGCTGTAAGACCAGATCGTCGTCACCTGCTTCATATCGTGTT
TCAGCGGCCTTGAGCCCTGCGCGCCCCAAACACCAATGTAACCTCCTGATTGTGGCCTAATGACG
CGGCTATGCTCCGCTAAAAATAGCTGACAGCACGTTCATGGGTTGCAGCCGAAACGAGGGGGCAA
CTCCAGATGCGTGCTCATCGCATGTCCTTACCTCGCCGAACCAGAGCACCGTTTCGGCGTATTTT
CTCATCTGTAGGGACAGTCACAGGGCCACGGCAGGTGGAGCCACGCGGCTGAGCCTACCACGGGG
GCGTTACTACGTGAAACAAAGACTATTGTTGTGACAATGGTCGAACTCGAACCGCTGATCTGTGG
TCGGTATGCCTGTTTCACTCATTTTATACCCATTTTGCCGATTGTTTCCAAAACCAAGGAAAATC
TGAAACAATAAACCTCCCCACTACAAGACAATTCACATTTCCACT
Right flanking sequence: Indices 75040 -- 75539
CTCCACCCACTCCACCCACTCCATCTCCTTCTCATTGCCCCTGCTTCCATTCCCGTCCACATGTG
ATATGCACCTCACCAATGTGGCAATTCCACTACCCCTGGACAGAAGCTGCAGCTCGCCGCAGACG
GGTCGTCTGGTTGCCGACTGGGAACAGCGTCCATGTCGGATCGGCACTCCCGCACGTCATAGCCG
ACGTGATGGCCAGCACGCCATTGGCGTCCCAACCAGCACATAGTGGTTGCATGTAAGGCGGGGGT
CCGCTTCCATCGAACCTAAACCCGCCACAAAAACCCAGAGAGTAGTGTGAGCAGTGTCGGTTTGC
CCGTCGTGCCTGAGGGGCATCTGCATCTGTGCCATTGTACGGCGATAACGCCCCTGTAGTTGGTG
GTCCAGTGTTCACCACTGACGCGGCCCACGCGCCTTGCATCATCATACGGCCAGGCTTGGCAACC
GCATGAGCAAGCTGGCAGCAGCCGCGGAGTACCACGCAACGTATG
Found at i:75046 original size:29 final size:29
Alignment explanation
Indices: 74978--75039 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 29
74968 CATTTCCACT
74978 CATCTCACACCATCTACACCATCTCACAC
1 CATCTCACACCATCTACACCATCTCACAC
75007 CATCTCACACCATCTCACACCATC-CACAC
1 CATCTCACACCATCT-ACACCATCTCACAC
75036 CATC
1 CATC
75040 CTCCACCCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 24 0.75
30 8 0.25
ACGTcount: A:0.31, C:0.50, G:0.00, T:0.19
Consensus pattern (29 bp):
CATCTCACACCATCTACACCATCTCACAC
Left flanking sequence: Indices 74478 -- 74977
TCTGCGAGTCTGTGAAGCTATCAAGCTGTAAGACCAGATCGTCGTCACCTGCTTCATATCGTGTT
TCAGCGGCCTTGAGCCCTGCGCGCCCCAAACACCAATGTAACCTCCTGATTGTGGCCTAATGACG
CGGCTATGCTCCGCTAAAAATAGCTGACAGCACGTTCATGGGTTGCAGCCGAAACGAGGGGGCAA
CTCCAGATGCGTGCTCATCGCATGTCCTTACCTCGCCGAACCAGAGCACCGTTTCGGCGTATTTT
CTCATCTGTAGGGACAGTCACAGGGCCACGGCAGGTGGAGCCACGCGGCTGAGCCTACCACGGGG
GCGTTACTACGTGAAACAAAGACTATTGTTGTGACAATGGTCGAACTCGAACCGCTGATCTGTGG
TCGGTATGCCTGTTTCACTCATTTTATACCCATTTTGCCGATTGTTTCCAAAACCAAGGAAAATC
TGAAACAATAAACCTCCCCACTACAAGACAATTCACATTTCCACT
Right flanking sequence: Indices 75040 -- 75539
CTCCACCCACTCCACCCACTCCATCTCCTTCTCATTGCCCCTGCTTCCATTCCCGTCCACATGTG
ATATGCACCTCACCAATGTGGCAATTCCACTACCCCTGGACAGAAGCTGCAGCTCGCCGCAGACG
GGTCGTCTGGTTGCCGACTGGGAACAGCGTCCATGTCGGATCGGCACTCCCGCACGTCATAGCCG
ACGTGATGGCCAGCACGCCATTGGCGTCCCAACCAGCACATAGTGGTTGCATGTAAGGCGGGGGT
CCGCTTCCATCGAACCTAAACCCGCCACAAAAACCCAGAGAGTAGTGTGAGCAGTGTCGGTTTGC
CCGTCGTGCCTGAGGGGCATCTGCATCTGTGCCATTGTACGGCGATAACGCCCCTGTAGTTGGTG
GTCCAGTGTTCACCACTGACGCGGCCCACGCGCCTTGCATCATCATACGGCCAGGCTTGGCAACC
GCATGAGCAAGCTGGCAGCAGCCGCGGAGTACCACGCAACGTATG
Found at i:75682 original size:16 final size:17
Alignment explanation
Indices: 75653--75692 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
75643 GACCAGATCT
* *
75653 GTAGCACTGTCCCA-CC
1 GTAGCTCTGACCCACCC
75669 GTAGCTCTGACCCACCC
1 GTAGCTCTGACCCACCC
75686 GTAGCTC
1 GTAGCTC
75693 AGTCTCACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.17, C:0.42, G:0.20, T:0.20
Consensus pattern (17 bp):
GTAGCTCTGACCCACCC
Left flanking sequence: Indices 75153 -- 75652
GCAGCTCGCCGCAGACGGGTCGTCTGGTTGCCGACTGGGAACAGCGTCCATGTCGGATCGGCACT
CCCGCACGTCATAGCCGACGTGATGGCCAGCACGCCATTGGCGTCCCAACCAGCACATAGTGGTT
GCATGTAAGGCGGGGGTCCGCTTCCATCGAACCTAAACCCGCCACAAAAACCCAGAGAGTAGTGT
GAGCAGTGTCGGTTTGCCCGTCGTGCCTGAGGGGCATCTGCATCTGTGCCATTGTACGGCGATAA
CGCCCCTGTAGTTGGTGGTCCAGTGTTCACCACTGACGCGGCCCACGCGCCTTGCATCATCATAC
GGCCAGGCTTGGCAACCGCATGAGCAAGCTGGCAGCAGCCGCGGAGTACCACGCAACGTATGTCC
CGAAATAGCCAAAAGAAAGAGATTTTGAGATGGACCCTGCTCAGGCACACTTACGTCGGAAAACC
TAAAACCCGGCCCTGAGCCACAGCCTGGACAATAGGACCAGATCT
Right flanking sequence: Indices 75693 -- 76192
AGTCTCACCCATAGGCACCCATAGCCACCCGTAGCTCTTCCACCTGTAGCTCTTCCGCCCAGCCC
GCCATCGCACCAGTTTCCAGGTGGTGTCTGCCAGGCACCGCGGCCCTACCAGCTCACTGCAGGAA
CGGCATTTTTGCCCTGGAGTCCGAAGGGGTCGCGTCCACGGGCCACCACCAGGCGGAAAACCCAC
CACGGCGTCCCCCCACACCTCTAAAACCCCCCACCGTCCTCTTCCGCCTCAAAAACCTGGGCTTC
CACCTTCGTAACCACCCCCCGCGGTGGCAGTTGCAAACCTCAGACGCACCTCGCGCGTGGATCCA
AAAACGGGGCAACCACAAGCTTTTGGCCATTGAAAAAACCCGATTCGATTGGCACGGGCAACCAC
CAGTACCCCACCCCAGCACCCCACCCAGCTGATCCCTGCCCTGGCACATCCCCCGTTCCCGCGTC
CCTGTCCCTGTGCGCTGTAGGCGACCTCCACCTCCGAGGGAGCCC
Found at i:75741 original size:15 final size:15
Alignment explanation
Indices: 75717--75748 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
75707 GCACCCATAG
75717 CCACCCGTAGCTCTT
1 CCACCCGTAGCTCTT
*
75732 CCACCTGTAGCTCTT
1 CCACCCGTAGCTCTT
75747 CC
1 CC
75749 GCCCAGCCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.47, G:0.12, T:0.28
Consensus pattern (15 bp):
CCACCCGTAGCTCTT
Left flanking sequence: Indices 75217 -- 75716
TCCCGCACGTCATAGCCGACGTGATGGCCAGCACGCCATTGGCGTCCCAACCAGCACATAGTGGT
TGCATGTAAGGCGGGGGTCCGCTTCCATCGAACCTAAACCCGCCACAAAAACCCAGAGAGTAGTG
TGAGCAGTGTCGGTTTGCCCGTCGTGCCTGAGGGGCATCTGCATCTGTGCCATTGTACGGCGATA
ACGCCCCTGTAGTTGGTGGTCCAGTGTTCACCACTGACGCGGCCCACGCGCCTTGCATCATCATA
CGGCCAGGCTTGGCAACCGCATGAGCAAGCTGGCAGCAGCCGCGGAGTACCACGCAACGTATGTC
CCGAAATAGCCAAAAGAAAGAGATTTTGAGATGGACCCTGCTCAGGCACACTTACGTCGGAAAAC
CTAAAACCCGGCCCTGAGCCACAGCCTGGACAATAGGACCAGATCTGTAGCACTGTCCCACCGTA
GCTCTGACCCACCCGTAGCTCAGTCTCACCCATAGGCACCCATAG
Right flanking sequence: Indices 75749 -- 76248
GCCCAGCCCGCCATCGCACCAGTTTCCAGGTGGTGTCTGCCAGGCACCGCGGCCCTACCAGCTCA
CTGCAGGAACGGCATTTTTGCCCTGGAGTCCGAAGGGGTCGCGTCCACGGGCCACCACCAGGCGG
AAAACCCACCACGGCGTCCCCCCACACCTCTAAAACCCCCCACCGTCCTCTTCCGCCTCAAAAAC
CTGGGCTTCCACCTTCGTAACCACCCCCCGCGGTGGCAGTTGCAAACCTCAGACGCACCTCGCGC
GTGGATCCAAAAACGGGGCAACCACAAGCTTTTGGCCATTGAAAAAACCCGATTCGATTGGCACG
GGCAACCACCAGTACCCCACCCCAGCACCCCACCCAGCTGATCCCTGCCCTGGCACATCCCCCGT
TCCCGCGTCCCTGTCCCTGTGCGCTGTAGGCGACCTCCACCTCCGAGGGAGCCCCAACCACCCGT
ACCATGAGGTCGTTCATGCGCCATCGCCGCAACGAGCTGGGCAAT
Found at i:76531 original size:39 final size:39
Alignment explanation
Indices: 76488--76562 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
76478 ACTACCCGAA
76488 TTCCCAAAACTACACCCAGAACCAAAACTACACCCAAAT
1 TTCCCAAAACTACACCCAGAACCAAAACTACACCCAAAT
* *
76527 TTCCCAAAACTACACTCAGAACCAGAACTACACCCA
1 TTCCCAAAACTACACCCAGAACCAAAACTACACCCA
76563 GTACCCACAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.44, C:0.39, G:0.04, T:0.13
Consensus pattern (39 bp):
TTCCCAAAACTACACCCAGAACCAAAACTACACCCAAAT
Left flanking sequence: Indices 75988 -- 76487
AACCTCAGACGCACCTCGCGCGTGGATCCAAAAACGGGGCAACCACAAGCTTTTGGCCATTGAAA
AAACCCGATTCGATTGGCACGGGCAACCACCAGTACCCCACCCCAGCACCCCACCCAGCTGATCC
CTGCCCTGGCACATCCCCCGTTCCCGCGTCCCTGTCCCTGTGCGCTGTAGGCGACCTCCACCTCC
GAGGGAGCCCCAACCACCCGTACCATGAGGTCGTTCATGCGCCATCGCCGCAACGAGCTGGGCAA
TTCCATCGAGGAGGGCGACATCCTGGCACTCCTGGGACTCCTGATGCCGCCCCCACGGGCCTCCA
AGAGCGCTGCCGGTTCTGCCAGCCCGTCCCCCGTGATCCAGGCCAAACCCACCATGGGCCCGGTG
TCAGCCCAAAAGACCCCGACGTCGCTGCCGGTGGTGGGTCTGCACGGGCCCACGTTCACGCTGCC
CAAGGGCTACCAGAACTACGCCCAGAATTCACAGAACTACCCGAA
Right flanking sequence: Indices 76563 -- 77062
GTACCCACAGTTTGGCCAGGCGCCGGCGCCGATGCCAGCGCCCAAACAGCTGCCCAAGAAGTTGT
TGACGCCGATCCGCAACTTGTTTGGCCAGAAGCTGACCACTCCCGAGACGAAAAAGGGCCCGCCG
CCCACCCAGTCCCAGGGCACGCCCCGCCGCTACCTGGAGGAGGCCAGCGTGCTGCTGCGGCTGCG
GCCCACCAGCTTCTCGCGGGTGTCCTCCAACGACACCCCGCGCCCGCTGATGTTCAAGACCACCA
GCGCATCGCCCGCCAAACGCATGCTGGCCGACGAGGCCACCACCAGCCCGGTGGTGGTGCCCAAG
GGCTCGCCGCGCGCCACCCGCAACAAGGGGTTCGAGGTAATCAAGGGCAAGGCCTCGTTCAACAT
CGCGAAGCCGTTGGTGATTCTGGGGCCGCTCAGCCCGCCGGTGGTCACGCCCGGTGCCGCTGCCG
CAGCCCAGAGCGCCACCCCCGTCACCAGCGGGTCGCTGGCGCCGC
Found at i:76535 original size:21 final size:21
Alignment explanation
Indices: 76456--76563 Score: 92
Period size: 18 Copynumber: 5.6 Consensus size: 21
76446 GGGCTACCAG
* * *
76456 AACTACGCCCAGAATTCACAG
1 AACTACACCCAGAATTCCCAA
76477 AACT--ACCC-GAATTCCCAA
1 AACTACACCCAGAATTCCCAA
76495 AACTACACCCAGAA---CCAA
1 AACTACACCCAGAATTCCCAA
76513 AACTACACCCA-AATTTCCCAA
1 AACTACACCCAGAA-TTCCCAA
* *
76534 AACTACACTCAGAA---CCAG
1 AACTACACCCAGAATTCCCAA
76552 AACTACACCCAG
1 AACTACACCCAG
76564 TACCCACAGT
Statistics
Matches: 73, Mismatches: 6, Indels: 19
0.74 0.06 0.19
Matches are distributed among these distances:
17 2 0.03
18 41 0.56
19 3 0.04
20 4 0.05
21 21 0.29
22 2 0.03
ACGTcount: A:0.43, C:0.37, G:0.07, T:0.13
Consensus pattern (21 bp):
AACTACACCCAGAATTCCCAA
Left flanking sequence: Indices 75956 -- 76455
CTTCGTAACCACCCCCCGCGGTGGCAGTTGCAAACCTCAGACGCACCTCGCGCGTGGATCCAAAA
ACGGGGCAACCACAAGCTTTTGGCCATTGAAAAAACCCGATTCGATTGGCACGGGCAACCACCAG
TACCCCACCCCAGCACCCCACCCAGCTGATCCCTGCCCTGGCACATCCCCCGTTCCCGCGTCCCT
GTCCCTGTGCGCTGTAGGCGACCTCCACCTCCGAGGGAGCCCCAACCACCCGTACCATGAGGTCG
TTCATGCGCCATCGCCGCAACGAGCTGGGCAATTCCATCGAGGAGGGCGACATCCTGGCACTCCT
GGGACTCCTGATGCCGCCCCCACGGGCCTCCAAGAGCGCTGCCGGTTCTGCCAGCCCGTCCCCCG
TGATCCAGGCCAAACCCACCATGGGCCCGGTGTCAGCCCAAAAGACCCCGACGTCGCTGCCGGTG
GTGGGTCTGCACGGGCCCACGTTCACGCTGCCCAAGGGCTACCAG
Right flanking sequence: Indices 76564 -- 77063
TACCCACAGTTTGGCCAGGCGCCGGCGCCGATGCCAGCGCCCAAACAGCTGCCCAAGAAGTTGTT
GACGCCGATCCGCAACTTGTTTGGCCAGAAGCTGACCACTCCCGAGACGAAAAAGGGCCCGCCGC
CCACCCAGTCCCAGGGCACGCCCCGCCGCTACCTGGAGGAGGCCAGCGTGCTGCTGCGGCTGCGG
CCCACCAGCTTCTCGCGGGTGTCCTCCAACGACACCCCGCGCCCGCTGATGTTCAAGACCACCAG
CGCATCGCCCGCCAAACGCATGCTGGCCGACGAGGCCACCACCAGCCCGGTGGTGGTGCCCAAGG
GCTCGCCGCGCGCCACCCGCAACAAGGGGTTCGAGGTAATCAAGGGCAAGGCCTCGTTCAACATC
GCGAAGCCGTTGGTGATTCTGGGGCCGCTCAGCCCGCCGGTGGTCACGCCCGGTGCCGCTGCCGC
AGCCCAGAGCGCCACCCCCGTCACCAGCGGGTCGCTGGCGCCGCT
Found at i:77913 original size:12 final size:12
Alignment explanation
Indices: 77896--77920 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77886 CCACTACCTG
77896 GTGGACGAGTAC
1 GTGGACGAGTAC
77908 GTGGACGAGTAC
1 GTGGACGAGTAC
77920 G
1 G
77921 CTGAGGCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.44, T:0.16
Consensus pattern (12 bp):
GTGGACGAGTAC
Left flanking sequence: Indices 77396 -- 77895
GGCTCCTGGGCCGCGAGCTGGCGAGCCCGTTGCGGACGCCACAGCCACGGGCGCTGGTGCTGCTG
ATCCCGTCGCACTTGCTGACGCCGCTGACGGAGCCGCTGGTCGGGCCGGCTCCCGTGCCGCTTGT
GCGCGACGACGACATTGCCGAGGAGGACGAGATCGCCTACCTGGACGAGCTGGACGCGCTGGACC
TGCTGCAGTTCTCGTTCACCAAGGACGTGATTGGCGGGCGCAACACCTCGGTCAAGTACTACAAG
ACGCACAAGATGACGCCTACACCGCCGGCTCCCGCCGCCAACACGTTCTCCGAGCGTGACTTGGG
GTACGAGGTGGACGAGTTCAGCGACTACGACTACGAGATGAACGGGTACGGCGACGACGGCGACG
GCGAGGGCGACGTGGGCTACAACGACGCGCTCGGGCTCGAGGACGACGGCGTGGGCTACAACGGC
GCGTTGGACGACGCCAGCGGGTCGGGCTCGGACTACCACTACCTG
Right flanking sequence: Indices 77921 -- 78420
CTGAGGCTGAGTACGAGCCCGGATACGAGCCCGGATACGAGCCCGGGTACGAGCCCAAGTACACT
GAGCCCAAGTACACCGAGCCCAAGTATGTGGACGAGTACGCCGAGCCCAAGTACGTGGACGAGTA
CGGTGAGCCCAGGTTCTCCGAGCCCGCGTACACCGAGCCCGAGCTCGCGGCACCACCGCTGTTTG
GCCCCGTGGGCGACGACGAGCTGTTCCAGGACGACCAGCTGTACAACGACGACCAGCTGTACAAC
GACCGCCTGTACAAGAGCAAGGACGAGGAGCGGTTCCTCGGGTTGGGCGGCTCGCAGTACAGCGT
GCGTGGCCCGGTATCCGGCCCGATGTCCGGCCTGGTGCTGAGCGCGTTGGCCAGTGCCCGCGGCT
CCGACACCGCGTTGGAGGCCCGCCGGTCGCCGCTCACCCCACACAACCTCGACTTCCCGGCGGCC
AACCCGTTGACACCCGACGCCAGCCACGGCGCGCTGTCGCCAGAC
Found at i:77949 original size:12 final size:12
Alignment explanation
Indices: 77932--77976 Score: 81
Period size: 12 Copynumber: 3.8 Consensus size: 12
77922 TGAGGCTGAG
77932 TACGAGCCCGGA
1 TACGAGCCCGGA
77944 TACGAGCCCGGA
1 TACGAGCCCGGA
*
77956 TACGAGCCCGGG
1 TACGAGCCCGGA
77968 TACGAGCCC
1 TACGAGCCC
77977 AAGTACACTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.22, C:0.36, G:0.33, T:0.09
Consensus pattern (12 bp):
TACGAGCCCGGA
Left flanking sequence: Indices 77432 -- 77931
CGCCACAGCCACGGGCGCTGGTGCTGCTGATCCCGTCGCACTTGCTGACGCCGCTGACGGAGCCG
CTGGTCGGGCCGGCTCCCGTGCCGCTTGTGCGCGACGACGACATTGCCGAGGAGGACGAGATCGC
CTACCTGGACGAGCTGGACGCGCTGGACCTGCTGCAGTTCTCGTTCACCAAGGACGTGATTGGCG
GGCGCAACACCTCGGTCAAGTACTACAAGACGCACAAGATGACGCCTACACCGCCGGCTCCCGCC
GCCAACACGTTCTCCGAGCGTGACTTGGGGTACGAGGTGGACGAGTTCAGCGACTACGACTACGA
GATGAACGGGTACGGCGACGACGGCGACGGCGAGGGCGACGTGGGCTACAACGACGCGCTCGGGC
TCGAGGACGACGGCGTGGGCTACAACGGCGCGTTGGACGACGCCAGCGGGTCGGGCTCGGACTAC
CACTACCTGGTGGACGAGTACGTGGACGAGTACGCTGAGGCTGAG
Right flanking sequence: Indices 77977 -- 78476
AAGTACACTGAGCCCAAGTACACCGAGCCCAAGTATGTGGACGAGTACGCCGAGCCCAAGTACGT
GGACGAGTACGGTGAGCCCAGGTTCTCCGAGCCCGCGTACACCGAGCCCGAGCTCGCGGCACCAC
CGCTGTTTGGCCCCGTGGGCGACGACGAGCTGTTCCAGGACGACCAGCTGTACAACGACGACCAG
CTGTACAACGACCGCCTGTACAAGAGCAAGGACGAGGAGCGGTTCCTCGGGTTGGGCGGCTCGCA
GTACAGCGTGCGTGGCCCGGTATCCGGCCCGATGTCCGGCCTGGTGCTGAGCGCGTTGGCCAGTG
CCCGCGGCTCCGACACCGCGTTGGAGGCCCGCCGGTCGCCGCTCACCCCACACAACCTCGACTTC
CCGGCGGCCAACCCGTTGACACCCGACGCCAGCCACGGCGCGCTGTCGCCAGACACCCCGCTGCA
GTTGTTGGCGGCGTACCACGACGAGCCGCGCGACACCTACCAGAC
Found at i:77991 original size:15 final size:15
Alignment explanation
Indices: 77970--78011 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
77960 AGCCCGGGTA
77970 CGAGCCCAAGTACAC
1 CGAGCCCAAGTACAC
*
77985 TGAGCCCAAGTACAC
1 CGAGCCCAAGTACAC
78000 CGAGCCCAAGTA
1 CGAGCCCAAGTA
78012 TGTGGACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.36, G:0.21, T:0.10
Consensus pattern (15 bp):
CGAGCCCAAGTACAC
Left flanking sequence: Indices 77470 -- 77969
CACTTGCTGACGCCGCTGACGGAGCCGCTGGTCGGGCCGGCTCCCGTGCCGCTTGTGCGCGACGA
CGACATTGCCGAGGAGGACGAGATCGCCTACCTGGACGAGCTGGACGCGCTGGACCTGCTGCAGT
TCTCGTTCACCAAGGACGTGATTGGCGGGCGCAACACCTCGGTCAAGTACTACAAGACGCACAAG
ATGACGCCTACACCGCCGGCTCCCGCCGCCAACACGTTCTCCGAGCGTGACTTGGGGTACGAGGT
GGACGAGTTCAGCGACTACGACTACGAGATGAACGGGTACGGCGACGACGGCGACGGCGAGGGCG
ACGTGGGCTACAACGACGCGCTCGGGCTCGAGGACGACGGCGTGGGCTACAACGGCGCGTTGGAC
GACGCCAGCGGGTCGGGCTCGGACTACCACTACCTGGTGGACGAGTACGTGGACGAGTACGCTGA
GGCTGAGTACGAGCCCGGATACGAGCCCGGATACGAGCCCGGGTA
Right flanking sequence: Indices 78012 -- 78511
TGTGGACGAGTACGCCGAGCCCAAGTACGTGGACGAGTACGGTGAGCCCAGGTTCTCCGAGCCCG
CGTACACCGAGCCCGAGCTCGCGGCACCACCGCTGTTTGGCCCCGTGGGCGACGACGAGCTGTTC
CAGGACGACCAGCTGTACAACGACGACCAGCTGTACAACGACCGCCTGTACAAGAGCAAGGACGA
GGAGCGGTTCCTCGGGTTGGGCGGCTCGCAGTACAGCGTGCGTGGCCCGGTATCCGGCCCGATGT
CCGGCCTGGTGCTGAGCGCGTTGGCCAGTGCCCGCGGCTCCGACACCGCGTTGGAGGCCCGCCGG
TCGCCGCTCACCCCACACAACCTCGACTTCCCGGCGGCCAACCCGTTGACACCCGACGCCAGCCA
CGGCGCGCTGTCGCCAGACACCCCGCTGCAGTTGTTGGCGGCGTACCACGACGAGCCGCGCGACA
CCTACCAGACGCTCGAGCCGCCGCCGCCGCTTCTGGCACCCAAGG
Found at i:78040 original size:15 final size:15
Alignment explanation
Indices: 77970--78040 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
77960 AGCCCGGGTA
*
77970 CGAGCCCAAGTACAC
1 CGAGCCCAAGTACGC
* *
77985 TGAGCCCAAGTACAC
1 CGAGCCCAAGTACGC
*
78000 CGAGCCCAAGTATG-
1 CGAGCCCAAGTACGC
* * *
78014 TG-G-ACGAGTACGC
1 CGAGCCCAAGTACGC
78027 CGAGCCCAAGTACG
1 CGAGCCCAAGTACG
78041 TGGACGAGTA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
12 6 0.14
13 2 0.05
14 2 0.05
15 32 0.76
ACGTcount: A:0.30, C:0.32, G:0.27, T:0.11
Consensus pattern (15 bp):
CGAGCCCAAGTACGC
Left flanking sequence: Indices 77470 -- 77969
CACTTGCTGACGCCGCTGACGGAGCCGCTGGTCGGGCCGGCTCCCGTGCCGCTTGTGCGCGACGA
CGACATTGCCGAGGAGGACGAGATCGCCTACCTGGACGAGCTGGACGCGCTGGACCTGCTGCAGT
TCTCGTTCACCAAGGACGTGATTGGCGGGCGCAACACCTCGGTCAAGTACTACAAGACGCACAAG
ATGACGCCTACACCGCCGGCTCCCGCCGCCAACACGTTCTCCGAGCGTGACTTGGGGTACGAGGT
GGACGAGTTCAGCGACTACGACTACGAGATGAACGGGTACGGCGACGACGGCGACGGCGAGGGCG
ACGTGGGCTACAACGACGCGCTCGGGCTCGAGGACGACGGCGTGGGCTACAACGGCGCGTTGGAC
GACGCCAGCGGGTCGGGCTCGGACTACCACTACCTGGTGGACGAGTACGTGGACGAGTACGCTGA
GGCTGAGTACGAGCCCGGATACGAGCCCGGATACGAGCCCGGGTA
Right flanking sequence: Indices 78041 -- 78540
TGGACGAGTACGGTGAGCCCAGGTTCTCCGAGCCCGCGTACACCGAGCCCGAGCTCGCGGCACCA
CCGCTGTTTGGCCCCGTGGGCGACGACGAGCTGTTCCAGGACGACCAGCTGTACAACGACGACCA
GCTGTACAACGACCGCCTGTACAAGAGCAAGGACGAGGAGCGGTTCCTCGGGTTGGGCGGCTCGC
AGTACAGCGTGCGTGGCCCGGTATCCGGCCCGATGTCCGGCCTGGTGCTGAGCGCGTTGGCCAGT
GCCCGCGGCTCCGACACCGCGTTGGAGGCCCGCCGGTCGCCGCTCACCCCACACAACCTCGACTT
CCCGGCGGCCAACCCGTTGACACCCGACGCCAGCCACGGCGCGCTGTCGCCAGACACCCCGCTGC
AGTTGTTGGCGGCGTACCACGACGAGCCGCGCGACACCTACCAGACGCTCGAGCCGCCGCCGCCG
CTTCTGGCACCCAAGGTGTTCAACCGGCTGTACCACATGTCGGTG
Found at i:78052 original size:27 final size:27
Alignment explanation
Indices: 77993--78061 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
77983 ACTGAGCCCA
* *
77993 AGTACACCGAGCCCAAGTATGTGGACG
1 AGTACGCCGAGCCCAAGTACGTGGACG
78020 AGTACGCCGAGCCCAAGTACGTGGACG
1 AGTACGCCGAGCCCAAGTACGTGGACG
**
78047 AGTACGGTGAGCCCA
1 AGTACGCCGAGCCCA
78062 GGTTCTCCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.28, G:0.32, T:0.13
Consensus pattern (27 bp):
AGTACGCCGAGCCCAAGTACGTGGACG
Left flanking sequence: Indices 77493 -- 77992
GCCGCTGGTCGGGCCGGCTCCCGTGCCGCTTGTGCGCGACGACGACATTGCCGAGGAGGACGAGA
TCGCCTACCTGGACGAGCTGGACGCGCTGGACCTGCTGCAGTTCTCGTTCACCAAGGACGTGATT
GGCGGGCGCAACACCTCGGTCAAGTACTACAAGACGCACAAGATGACGCCTACACCGCCGGCTCC
CGCCGCCAACACGTTCTCCGAGCGTGACTTGGGGTACGAGGTGGACGAGTTCAGCGACTACGACT
ACGAGATGAACGGGTACGGCGACGACGGCGACGGCGAGGGCGACGTGGGCTACAACGACGCGCTC
GGGCTCGAGGACGACGGCGTGGGCTACAACGGCGCGTTGGACGACGCCAGCGGGTCGGGCTCGGA
CTACCACTACCTGGTGGACGAGTACGTGGACGAGTACGCTGAGGCTGAGTACGAGCCCGGATACG
AGCCCGGATACGAGCCCGGGTACGAGCCCAAGTACACTGAGCCCA
Right flanking sequence: Indices 78062 -- 78561
GGTTCTCCGAGCCCGCGTACACCGAGCCCGAGCTCGCGGCACCACCGCTGTTTGGCCCCGTGGGC
GACGACGAGCTGTTCCAGGACGACCAGCTGTACAACGACGACCAGCTGTACAACGACCGCCTGTA
CAAGAGCAAGGACGAGGAGCGGTTCCTCGGGTTGGGCGGCTCGCAGTACAGCGTGCGTGGCCCGG
TATCCGGCCCGATGTCCGGCCTGGTGCTGAGCGCGTTGGCCAGTGCCCGCGGCTCCGACACCGCG
TTGGAGGCCCGCCGGTCGCCGCTCACCCCACACAACCTCGACTTCCCGGCGGCCAACCCGTTGAC
ACCCGACGCCAGCCACGGCGCGCTGTCGCCAGACACCCCGCTGCAGTTGTTGGCGGCGTACCACG
ACGAGCCGCGCGACACCTACCAGACGCTCGAGCCGCCGCCGCCGCTTCTGGCACCCAAGGTGTTC
AACCGGCTGTACCACATGTCGGTGGAGCTGCTCGCGCTCAAGCCG
Found at i:78164 original size:15 final size:15
Alignment explanation
Indices: 78146--78194 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
78136 CTGTTCCAGG
78146 ACGACCAGCTGTACAA
1 ACGACCAGCTGTAC-A
78162 CGACGACCAGCTGTACA
1 --ACGACCAGCTGTACA
78179 ACGACC-GCCTGTACA
1 ACGACCAG-CTGTACA
78194 A
1 A
78195 GAGCAAGGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.47
17 1 0.03
18 14 0.47
ACGTcount: A:0.33, C:0.35, G:0.20, T:0.12
Consensus pattern (15 bp):
ACGACCAGCTGTACA
Left flanking sequence: Indices 77646 -- 78145
GTACTACAAGACGCACAAGATGACGCCTACACCGCCGGCTCCCGCCGCCAACACGTTCTCCGAGC
GTGACTTGGGGTACGAGGTGGACGAGTTCAGCGACTACGACTACGAGATGAACGGGTACGGCGAC
GACGGCGACGGCGAGGGCGACGTGGGCTACAACGACGCGCTCGGGCTCGAGGACGACGGCGTGGG
CTACAACGGCGCGTTGGACGACGCCAGCGGGTCGGGCTCGGACTACCACTACCTGGTGGACGAGT
ACGTGGACGAGTACGCTGAGGCTGAGTACGAGCCCGGATACGAGCCCGGATACGAGCCCGGGTAC
GAGCCCAAGTACACTGAGCCCAAGTACACCGAGCCCAAGTATGTGGACGAGTACGCCGAGCCCAA
GTACGTGGACGAGTACGGTGAGCCCAGGTTCTCCGAGCCCGCGTACACCGAGCCCGAGCTCGCGG
CACCACCGCTGTTTGGCCCCGTGGGCGACGACGAGCTGTTCCAGG
Right flanking sequence: Indices 78195 -- 78694
GAGCAAGGACGAGGAGCGGTTCCTCGGGTTGGGCGGCTCGCAGTACAGCGTGCGTGGCCCGGTAT
CCGGCCCGATGTCCGGCCTGGTGCTGAGCGCGTTGGCCAGTGCCCGCGGCTCCGACACCGCGTTG
GAGGCCCGCCGGTCGCCGCTCACCCCACACAACCTCGACTTCCCGGCGGCCAACCCGTTGACACC
CGACGCCAGCCACGGCGCGCTGTCGCCAGACACCCCGCTGCAGTTGTTGGCGGCGTACCACGACG
AGCCGCGCGACACCTACCAGACGCTCGAGCCGCCGCCGCCGCTTCTGGCACCCAAGGTGTTCAAC
CGGCTGTACCACATGTCGGTGGAGCTGCTCGCGCTCAAGCCGCCCGGTGGGCTGGCACGCCCGTC
GCCCAAGCCCGCGCGGCCCGAGGACTCGTTGTACGGCGACGACATCTTGGAGAACTACCTCGACA
TGAGCAAGCTGCCGACCACGGACCCGCCCACCGACCCCACGATGA
Found at i:78166 original size:18 final size:18
Alignment explanation
Indices: 78126--78183 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
78116 GCCCCGTGGG
* * *
78126 CGACGACGAGCTGTTCCA
1 CGACGACCAGCTGTACAA
*
78144 GGACGACCAGCTGTACAA
1 CGACGACCAGCTGTACAA
78162 CGACGACCAGCTGTACAA
1 CGACGACCAGCTGTACAA
78180 CGAC
1 CGAC
78184 CGCCTGTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.29, C:0.33, G:0.26, T:0.12
Consensus pattern (18 bp):
CGACGACCAGCTGTACAA
Left flanking sequence: Indices 77626 -- 78125
GGGCGCAACACCTCGGTCAAGTACTACAAGACGCACAAGATGACGCCTACACCGCCGGCTCCCGC
CGCCAACACGTTCTCCGAGCGTGACTTGGGGTACGAGGTGGACGAGTTCAGCGACTACGACTACG
AGATGAACGGGTACGGCGACGACGGCGACGGCGAGGGCGACGTGGGCTACAACGACGCGCTCGGG
CTCGAGGACGACGGCGTGGGCTACAACGGCGCGTTGGACGACGCCAGCGGGTCGGGCTCGGACTA
CCACTACCTGGTGGACGAGTACGTGGACGAGTACGCTGAGGCTGAGTACGAGCCCGGATACGAGC
CCGGATACGAGCCCGGGTACGAGCCCAAGTACACTGAGCCCAAGTACACCGAGCCCAAGTATGTG
GACGAGTACGCCGAGCCCAAGTACGTGGACGAGTACGGTGAGCCCAGGTTCTCCGAGCCCGCGTA
CACCGAGCCCGAGCTCGCGGCACCACCGCTGTTTGGCCCCGTGGG
Right flanking sequence: Indices 78184 -- 78683
CGCCTGTACAAGAGCAAGGACGAGGAGCGGTTCCTCGGGTTGGGCGGCTCGCAGTACAGCGTGCG
TGGCCCGGTATCCGGCCCGATGTCCGGCCTGGTGCTGAGCGCGTTGGCCAGTGCCCGCGGCTCCG
ACACCGCGTTGGAGGCCCGCCGGTCGCCGCTCACCCCACACAACCTCGACTTCCCGGCGGCCAAC
CCGTTGACACCCGACGCCAGCCACGGCGCGCTGTCGCCAGACACCCCGCTGCAGTTGTTGGCGGC
GTACCACGACGAGCCGCGCGACACCTACCAGACGCTCGAGCCGCCGCCGCCGCTTCTGGCACCCA
AGGTGTTCAACCGGCTGTACCACATGTCGGTGGAGCTGCTCGCGCTCAAGCCGCCCGGTGGGCTG
GCACGCCCGTCGCCCAAGCCCGCGCGGCCCGAGGACTCGTTGTACGGCGACGACATCTTGGAGAA
CTACCTCGACATGAGCAAGCTGCCGACCACGGACCCGCCCACCGA
Found at i:79076 original size:30 final size:27
Alignment explanation
Indices: 79000--79077 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 27
78990 CCAGGAGCCT
*
79000 GTTCGCGGTGACCAGCTGGACGCGGTG
1 GTTCGCAGTGACCAGCTGGACGCGGTG
* *
79027 GTTCGCAGTCACGAGCTGGACGCGGTG
1 GTTCGCAGTGACCAGCTGGACGCGGTG
79054 GTTCGCAGCCATGACCAGCTGGAC
1 GTTCGCAG---TGACCAGCTGGAC
79078 CGTAGCCACC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 32 0.74
30 11 0.26
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.18
Consensus pattern (27 bp):
GTTCGCAGTGACCAGCTGGACGCGGTG
Left flanking sequence: Indices 78500 -- 78999
TGGCACCCAAGGTGTTCAACCGGCTGTACCACATGTCGGTGGAGCTGCTCGCGCTCAAGCCGCCC
GGTGGGCTGGCACGCCCGTCGCCCAAGCCCGCGCGGCCCGAGGACTCGTTGTACGGCGACGACAT
CTTGGAGAACTACCTCGACATGAGCAAGCTGCCGACCACGGACCCGCCCACCGACCCCACGATGA
CGCCGCCGCCGCCGATGTCGCAGACGCTGACGGTGCTGCTCGACTTGCTGCCGCTCATGGCACTC
AACCAGCTCAAGGCGCCCAACGGCACGTTTTTCCCACCGCTGGTGGCGGGGCTGATCCGTGGGTC
GAAGCGCGGGCTGGTGGACTACGACTCGGGCACGGGCACGGGGCTGTTGCGCGACGTGTTTGCCG
AGTTGGCGGCGGCACGGGCGGGCCACCGTCGCCGCGGGCTGGCGCCGACGCTGGACTGGCACCAC
CAGCTGTTTTTGCAGGCGCTGCAGAACTTCCATGGCCAGGAGCCT
Right flanking sequence: Indices 79078 -- 79577
CGTAGCCACCACGACCACTCGGACCTGGTATATCGCAGCCACCACCACCCGGTGTTTCGCCACCC
AGACCCGGTGTTTCGCAGCTACCACGACCTGATCAACGGCGATCTCAACGGCACCGCCGAGGACA
AAGCACGCGAGTTCGCCGAGTTTGCCGACAAGCGACGGCTGCTCCAGCTGTTTACAGACTCTGAA
GAGCCGCCACGACGCCTGCTCCAGCTGTTTGCCGACTCCGACGAGCCGCCGCGCCGCCACAGCAC
CCAGCTGACGATCTTGGAGATCACGGTGGACCGCGGGTACAAGCGCGCGAGCTACGACGGCTACG
TGCTGGCCACCGAGCTGTTGCTGGCGGGCCTGGCCCAGGCATCGCCCACCCAGTCGCCCCACTTG
ACGTCGCCCCACTTGGCCCCGCCGTCCGCGGTCAACCGCCAGCTGATCAGCCAGATGATGGAGCT
CTTGGGGTCGCTCGAGACCGAGGACGTGCCCATGGAGCACAAGCG
Found at i:79141 original size:21 final size:21
Alignment explanation
Indices: 79115--79158 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
79105 GTATATCGCA
79115 GCCA-CCACCACCCGGTGTTTC
1 GCCACCCA-CACCCGGTGTTTC
*
79136 GCCACCCAGACCCGGTGTTTC
1 GCCACCCACACCCGGTGTTTC
79157 GC
1 GC
79159 AGCTACCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.14, C:0.45, G:0.23, T:0.18
Consensus pattern (21 bp):
GCCACCCACACCCGGTGTTTC
Left flanking sequence: Indices 78615 -- 79114
GTACGGCGACGACATCTTGGAGAACTACCTCGACATGAGCAAGCTGCCGACCACGGACCCGCCCA
CCGACCCCACGATGACGCCGCCGCCGCCGATGTCGCAGACGCTGACGGTGCTGCTCGACTTGCTG
CCGCTCATGGCACTCAACCAGCTCAAGGCGCCCAACGGCACGTTTTTCCCACCGCTGGTGGCGGG
GCTGATCCGTGGGTCGAAGCGCGGGCTGGTGGACTACGACTCGGGCACGGGCACGGGGCTGTTGC
GCGACGTGTTTGCCGAGTTGGCGGCGGCACGGGCGGGCCACCGTCGCCGCGGGCTGGCGCCGACG
CTGGACTGGCACCACCAGCTGTTTTTGCAGGCGCTGCAGAACTTCCATGGCCAGGAGCCTGTTCG
CGGTGACCAGCTGGACGCGGTGGTTCGCAGTCACGAGCTGGACGCGGTGGTTCGCAGCCATGACC
AGCTGGACCGTAGCCACCACGACCACTCGGACCTGGTATATCGCA
Right flanking sequence: Indices 79159 -- 79658
AGCTACCACGACCTGATCAACGGCGATCTCAACGGCACCGCCGAGGACAAAGCACGCGAGTTCGC
CGAGTTTGCCGACAAGCGACGGCTGCTCCAGCTGTTTACAGACTCTGAAGAGCCGCCACGACGCC
TGCTCCAGCTGTTTGCCGACTCCGACGAGCCGCCGCGCCGCCACAGCACCCAGCTGACGATCTTG
GAGATCACGGTGGACCGCGGGTACAAGCGCGCGAGCTACGACGGCTACGTGCTGGCCACCGAGCT
GTTGCTGGCGGGCCTGGCCCAGGCATCGCCCACCCAGTCGCCCCACTTGACGTCGCCCCACTTGG
CCCCGCCGTCCGCGGTCAACCGCCAGCTGATCAGCCAGATGATGGAGCTCTTGGGGTCGCTCGAG
ACCGAGGACGTGCCCATGGAGCACAAGCGCAAGCTGGTGCACAACATGATGGGGTTGCTCACCGA
CTTGGAGCAGCAGATGCCGCCCGGCGAGCACCGCAACCTGATCTT
Found at i:79299 original size:42 final size:42
Alignment explanation
Indices: 79240--79322 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
79230 TGCCGACAAG
* *
79240 CGACGGCTGCTCCAGCTGTTTACAGACTCTGAAGAGCCGCCA
1 CGACGCCTGCTCCAGCTGTTTACAGACTCCGAAGAGCCGCCA
* * *
79282 CGACGCCTGCTCCAGCTGTTTGCCGACTCCGACGAGCCGCC
1 CGACGCCTGCTCCAGCTGTTTACAGACTCCGAAGAGCCGCC
79323 GCGCCGCCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.17, C:0.39, G:0.27, T:0.18
Consensus pattern (42 bp):
CGACGCCTGCTCCAGCTGTTTACAGACTCCGAAGAGCCGCCA
Left flanking sequence: Indices 78740 -- 79239
TGCTGCCGCTCATGGCACTCAACCAGCTCAAGGCGCCCAACGGCACGTTTTTCCCACCGCTGGTG
GCGGGGCTGATCCGTGGGTCGAAGCGCGGGCTGGTGGACTACGACTCGGGCACGGGCACGGGGCT
GTTGCGCGACGTGTTTGCCGAGTTGGCGGCGGCACGGGCGGGCCACCGTCGCCGCGGGCTGGCGC
CGACGCTGGACTGGCACCACCAGCTGTTTTTGCAGGCGCTGCAGAACTTCCATGGCCAGGAGCCT
GTTCGCGGTGACCAGCTGGACGCGGTGGTTCGCAGTCACGAGCTGGACGCGGTGGTTCGCAGCCA
TGACCAGCTGGACCGTAGCCACCACGACCACTCGGACCTGGTATATCGCAGCCACCACCACCCGG
TGTTTCGCCACCCAGACCCGGTGTTTCGCAGCTACCACGACCTGATCAACGGCGATCTCAACGGC
ACCGCCGAGGACAAAGCACGCGAGTTCGCCGAGTTTGCCGACAAG
Right flanking sequence: Indices 79323 -- 79822
GCGCCGCCACAGCACCCAGCTGACGATCTTGGAGATCACGGTGGACCGCGGGTACAAGCGCGCGA
GCTACGACGGCTACGTGCTGGCCACCGAGCTGTTGCTGGCGGGCCTGGCCCAGGCATCGCCCACC
CAGTCGCCCCACTTGACGTCGCCCCACTTGGCCCCGCCGTCCGCGGTCAACCGCCAGCTGATCAG
CCAGATGATGGAGCTCTTGGGGTCGCTCGAGACCGAGGACGTGCCCATGGAGCACAAGCGCAAGC
TGGTGCACAACATGATGGGGTTGCTCACCGACTTGGAGCAGCAGATGCCGCCCGGCGAGCACCGC
AACCTGATCTTCGACATGATGGCGACGTTGGACGCCATCGGCATGCGGTTGGACGAGGAGGCCGG
CGCGGCCGCGGTGGCGGACGACGAGCGCCGCCTGGACCGGCTGCTGGAACGGCGGATGCTGGTGG
CGTCGCTCGGCAACAAGCGCAACCTGATCAACAACATGATGCTGA
Found at i:80019 original size:9 final size:9
Alignment explanation
Indices: 80005--80030 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
79995 GTACGACGAG
80005 CAGCTGCCA
1 CAGCTGCCA
80014 CAGCTGCCA
1 CAGCTGCCA
80023 CAGCTGCC
1 CAGCTGCC
80031 GTTTCTCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.46, G:0.23, T:0.12
Consensus pattern (9 bp):
CAGCTGCCA
Left flanking sequence: Indices 79505 -- 80004
GCCAGCTGATCAGCCAGATGATGGAGCTCTTGGGGTCGCTCGAGACCGAGGACGTGCCCATGGAG
CACAAGCGCAAGCTGGTGCACAACATGATGGGGTTGCTCACCGACTTGGAGCAGCAGATGCCGCC
CGGCGAGCACCGCAACCTGATCTTCGACATGATGGCGACGTTGGACGCCATCGGCATGCGGTTGG
ACGAGGAGGCCGGCGCGGCCGCGGTGGCGGACGACGAGCGCCGCCTGGACCGGCTGCTGGAACGG
CGGATGCTGGTGGCGTCGCTCGGCAACAAGCGCAACCTGATCAACAACATGATGCTGACGCTTGC
CGCGCTCGATTTTTCGCTTCTCCCGGACGAGGCCGCGGCCAACGAGGTCCAGCTCCGCAAACGCA
AGCTGGAGAAGCACAACGAGCGCCCGCAGCTCGACCGCAAAACCACGCTGACGCTGGCGCTGCTG
ACGCTCACCCTGGACCCGCGCAAGCGCTACCTGTGGTACGACGAG
Right flanking sequence: Indices 80031 -- 80530
GTTTCTCCCGGTGAACCACCCGGCGTTCGCCAAGCGGGTGGCGCTGGACGACCTCGGCGAGGACT
TGCTCGACGAGATCAACCTGCTTCCCGCGGACTTTGACTTTGAGGAGCACGAGCGCACGCTGGCG
GCGGCTCTGGAGGCACTGCTGCCGCTGACACCGCGGTTCTTGCGGCTGAACTCGTACACCAAGAA
GCCCGTCAAGGCGGTGATGGAGTCGCGGTACCAGCTGCAGAAGATCCAGACCCACACCAAGACGG
TGACGTTTTACAAAAAGGGGTTGCTCAACCCGGAGGCGCTGCGGCTGCGGCTGGTGCTGCGGGCG
CCGCTGGTACGTCTGCAGGGTCTGTTTGCCCTGGTGACCGAGGAGGATGAAGAGTCGGGCCTGTG
GCGCAGCCAAGACATGCCGGCGCTTCCGTTTACTTTGGACCCCAAGTCCACCTTTGCATATAGCC
AGCCCGAGCTGGTGTCGTCCAACTCGAATTTGGGCACCATCACCG
Found at i:80715 original size:15 final size:15
Alignment explanation
Indices: 80674--80722 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
80664 TTATGACTGA
80674 TTTGACTGATTTGCG
1 TTTGACTGATTTGCG
*
80689 TTGGTTACTGATTTGCG
1 TT--TGACTGATTTGCG
80706 TTTGACTGATTTGCG
1 TTTGACTGATTTGCG
80721 TT
1 TT
80723 GATTGACTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 16 0.53
17 14 0.47
ACGTcount: A:0.12, C:0.12, G:0.27, T:0.49
Consensus pattern (15 bp):
TTTGACTGATTTGCG
Left flanking sequence: Indices 80174 -- 80673
CACTGCTGCCGCTGACACCGCGGTTCTTGCGGCTGAACTCGTACACCAAGAAGCCCGTCAAGGCG
GTGATGGAGTCGCGGTACCAGCTGCAGAAGATCCAGACCCACACCAAGACGGTGACGTTTTACAA
AAAGGGGTTGCTCAACCCGGAGGCGCTGCGGCTGCGGCTGGTGCTGCGGGCGCCGCTGGTACGTC
TGCAGGGTCTGTTTGCCCTGGTGACCGAGGAGGATGAAGAGTCGGGCCTGTGGCGCAGCCAAGAC
ATGCCGGCGCTTCCGTTTACTTTGGACCCCAAGTCCACCTTTGCATATAGCCAGCCCGAGCTGGT
GTCGTCCAACTCGAATTTGGGCACCATCACCGAGTCCTCGGGCAAATAAACACGGGCCCCGGCCC
AGAAGTAGTGAATGAGATGTAGAGAATAGGGAGAGAAGTAGGGTGTTGCTTATCTCAGGGTTGTT
ATTTATGACAAGGTCGTTGTTTATGACAGGTTCGTTTATGACTGA
Right flanking sequence: Indices 80723 -- 81222
GATTGACTGATTTACGTTGTTTGATTACGTTGTTTGATTACGTTGTTTGACTGATTACGTTGTTT
ACGACGGGTCGTTGTTTATGACTGGGTCGTTGTTTATGACTGCTTACGTTGTTATGAGTGCTCTG
CGTTGACTGATTTGCGTTGCTTACTGATAGTCGTAAGAGCACTGGCCTATGGGGCTTAGGCAGAG
GCGTTGCTTTGGCAGATGTTGGCCCACTACGCATGCCCACCACAACCGGAGTAACTCCGACCAAA
CCTTGTTTGGTTTCGGAAATGTGCCTACCCGAGTCAGGTCGGAAACGGCGAAACAAGGTTACGAG
AATAAACTGGGGACACTGCGATACCCAATCGGACGGAGCCCACAAACTAGGTTGGCAATGCACGC
AGGGTTCAGTGTCTGTCGATTCACGGACTGCATTTGCTGTCACTGCATGTCGCCTTCAAAGTCAA
TTGCACCTGCGTTTCCCGGGGTTATGAATCTACTATTCCTGTTTG
Found at i:80715 original size:32 final size:33
Alignment explanation
Indices: 80674--80740 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
80664 TTATGACTGA
* *
80674 TTTGACTGATTTGCGTTGGTT-ACTGATTTGCG
1 TTTGACTGATTTGCGTTGATTGACTGATTTACG
80706 TTTGACTGATTTGCGTTGATTGACTGATTTACG
1 TTTGACTGATTTGCGTTGATTGACTGATTTACG
80739 TT
1 TT
80741 GTTTGATTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 20 0.62
33 12 0.38
ACGTcount: A:0.15, C:0.12, G:0.25, T:0.48
Consensus pattern (33 bp):
TTTGACTGATTTGCGTTGATTGACTGATTTACG
Left flanking sequence: Indices 80174 -- 80673
CACTGCTGCCGCTGACACCGCGGTTCTTGCGGCTGAACTCGTACACCAAGAAGCCCGTCAAGGCG
GTGATGGAGTCGCGGTACCAGCTGCAGAAGATCCAGACCCACACCAAGACGGTGACGTTTTACAA
AAAGGGGTTGCTCAACCCGGAGGCGCTGCGGCTGCGGCTGGTGCTGCGGGCGCCGCTGGTACGTC
TGCAGGGTCTGTTTGCCCTGGTGACCGAGGAGGATGAAGAGTCGGGCCTGTGGCGCAGCCAAGAC
ATGCCGGCGCTTCCGTTTACTTTGGACCCCAAGTCCACCTTTGCATATAGCCAGCCCGAGCTGGT
GTCGTCCAACTCGAATTTGGGCACCATCACCGAGTCCTCGGGCAAATAAACACGGGCCCCGGCCC
AGAAGTAGTGAATGAGATGTAGAGAATAGGGAGAGAAGTAGGGTGTTGCTTATCTCAGGGTTGTT
ATTTATGACAAGGTCGTTGTTTATGACAGGTTCGTTTATGACTGA
Right flanking sequence: Indices 80741 -- 81240
GTTTGATTACGTTGTTTGATTACGTTGTTTGACTGATTACGTTGTTTACGACGGGTCGTTGTTTA
TGACTGGGTCGTTGTTTATGACTGCTTACGTTGTTATGAGTGCTCTGCGTTGACTGATTTGCGTT
GCTTACTGATAGTCGTAAGAGCACTGGCCTATGGGGCTTAGGCAGAGGCGTTGCTTTGGCAGATG
TTGGCCCACTACGCATGCCCACCACAACCGGAGTAACTCCGACCAAACCTTGTTTGGTTTCGGAA
ATGTGCCTACCCGAGTCAGGTCGGAAACGGCGAAACAAGGTTACGAGAATAAACTGGGGACACTG
CGATACCCAATCGGACGGAGCCCACAAACTAGGTTGGCAATGCACGCAGGGTTCAGTGTCTGTCG
ATTCACGGACTGCATTTGCTGTCACTGCATGTCGCCTTCAAAGTCAATTGCACCTGCGTTTCCCG
GGGTTATGAATCTACTATTCCTGTTTGTTTGCAAACATGTGCTAC
Found at i:80730 original size:18 final size:17
Alignment explanation
Indices: 80675--80743 Score: 90
Period size: 18 Copynumber: 4.1 Consensus size: 17
80665 TATGACTGAT
80675 TTGACTGATTTGCGTTGG
1 TTGACTGATTTGCGTT-G
80693 TT-ACTGATTTGCG-T-
1 TTGACTGATTTGCGTTG
80707 TTGACTGATTTGCGTTG
1 TTGACTGATTTGCGTTG
*
80724 ATTGACTGATTTACGTTG
1 -TTGACTGATTTGCGTTG
80742 TT
1 TT
80744 TGATTACGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
14 2 0.04
15 11 0.24
16 2 0.04
17 13 0.28
18 18 0.39
ACGTcount: A:0.14, C:0.12, G:0.26, T:0.48
Consensus pattern (17 bp):
TTGACTGATTTGCGTTG
Left flanking sequence: Indices 80175 -- 80674
ACTGCTGCCGCTGACACCGCGGTTCTTGCGGCTGAACTCGTACACCAAGAAGCCCGTCAAGGCGG
TGATGGAGTCGCGGTACCAGCTGCAGAAGATCCAGACCCACACCAAGACGGTGACGTTTTACAAA
AAGGGGTTGCTCAACCCGGAGGCGCTGCGGCTGCGGCTGGTGCTGCGGGCGCCGCTGGTACGTCT
GCAGGGTCTGTTTGCCCTGGTGACCGAGGAGGATGAAGAGTCGGGCCTGTGGCGCAGCCAAGACA
TGCCGGCGCTTCCGTTTACTTTGGACCCCAAGTCCACCTTTGCATATAGCCAGCCCGAGCTGGTG
TCGTCCAACTCGAATTTGGGCACCATCACCGAGTCCTCGGGCAAATAAACACGGGCCCCGGCCCA
GAAGTAGTGAATGAGATGTAGAGAATAGGGAGAGAAGTAGGGTGTTGCTTATCTCAGGGTTGTTA
TTTATGACAAGGTCGTTGTTTATGACAGGTTCGTTTATGACTGAT
Right flanking sequence: Indices 80744 -- 81243
TGATTACGTTGTTTGATTACGTTGTTTGACTGATTACGTTGTTTACGACGGGTCGTTGTTTATGA
CTGGGTCGTTGTTTATGACTGCTTACGTTGTTATGAGTGCTCTGCGTTGACTGATTTGCGTTGCT
TACTGATAGTCGTAAGAGCACTGGCCTATGGGGCTTAGGCAGAGGCGTTGCTTTGGCAGATGTTG
GCCCACTACGCATGCCCACCACAACCGGAGTAACTCCGACCAAACCTTGTTTGGTTTCGGAAATG
TGCCTACCCGAGTCAGGTCGGAAACGGCGAAACAAGGTTACGAGAATAAACTGGGGACACTGCGA
TACCCAATCGGACGGAGCCCACAAACTAGGTTGGCAATGCACGCAGGGTTCAGTGTCTGTCGATT
CACGGACTGCATTTGCTGTCACTGCATGTCGCCTTCAAAGTCAATTGCACCTGCGTTTCCCGGGG
TTATGAATCTACTATTCCTGTTTGTTTGCAAACATGTGCTACAGG
Found at i:80752 original size:13 final size:13
Alignment explanation
Indices: 80734--80772 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
80724 ATTGACTGAT
80734 TTACGTTGTTTGA
1 TTACGTTGTTTGA
80747 TTACGTTGTTTGA
1 TTACGTTGTTTGA
80760 TTACGTTGTTTGA
1 TTACGTTGTTTGA
80773 CTGATTACGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (13 bp):
TTACGTTGTTTGA
Left flanking sequence: Indices 80234 -- 80733
AGGCGGTGATGGAGTCGCGGTACCAGCTGCAGAAGATCCAGACCCACACCAAGACGGTGACGTTT
TACAAAAAGGGGTTGCTCAACCCGGAGGCGCTGCGGCTGCGGCTGGTGCTGCGGGCGCCGCTGGT
ACGTCTGCAGGGTCTGTTTGCCCTGGTGACCGAGGAGGATGAAGAGTCGGGCCTGTGGCGCAGCC
AAGACATGCCGGCGCTTCCGTTTACTTTGGACCCCAAGTCCACCTTTGCATATAGCCAGCCCGAG
CTGGTGTCGTCCAACTCGAATTTGGGCACCATCACCGAGTCCTCGGGCAAATAAACACGGGCCCC
GGCCCAGAAGTAGTGAATGAGATGTAGAGAATAGGGAGAGAAGTAGGGTGTTGCTTATCTCAGGG
TTGTTATTTATGACAAGGTCGTTGTTTATGACAGGTTCGTTTATGACTGATTTGACTGATTTGCG
TTGGTTACTGATTTGCGTTTGACTGATTTGCGTTGATTGACTGAT
Right flanking sequence: Indices 80773 -- 81272
CTGATTACGTTGTTTACGACGGGTCGTTGTTTATGACTGGGTCGTTGTTTATGACTGCTTACGTT
GTTATGAGTGCTCTGCGTTGACTGATTTGCGTTGCTTACTGATAGTCGTAAGAGCACTGGCCTAT
GGGGCTTAGGCAGAGGCGTTGCTTTGGCAGATGTTGGCCCACTACGCATGCCCACCACAACCGGA
GTAACTCCGACCAAACCTTGTTTGGTTTCGGAAATGTGCCTACCCGAGTCAGGTCGGAAACGGCG
AAACAAGGTTACGAGAATAAACTGGGGACACTGCGATACCCAATCGGACGGAGCCCACAAACTAG
GTTGGCAATGCACGCAGGGTTCAGTGTCTGTCGATTCACGGACTGCATTTGCTGTCACTGCATGT
CGCCTTCAAAGTCAATTGCACCTGCGTTTCCCGGGGTTATGAATCTACTATTCCTGTTTGTTTGC
AAACATGTGCTACAGGCTATTTCCGCCCCACCACGCGGCATGTCA
Found at i:80816 original size:18 final size:18
Alignment explanation
Indices: 80780--80829 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
80770 TGACTGATTA
*
80780 CGTTGTTTACGAC-GGGT
1 CGTTGTTTATGACTGGGT
80797 CGTTGTTTATGACTGGGT
1 CGTTGTTTATGACTGGGT
80815 CGTTGTTTATGACTG
1 CGTTGTTTATGACTG
80830 CTTACGTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 12 0.39
18 19 0.61
ACGTcount: A:0.12, C:0.14, G:0.32, T:0.42
Consensus pattern (18 bp):
CGTTGTTTATGACTGGGT
Left flanking sequence: Indices 80280 -- 80779
CACCAAGACGGTGACGTTTTACAAAAAGGGGTTGCTCAACCCGGAGGCGCTGCGGCTGCGGCTGG
TGCTGCGGGCGCCGCTGGTACGTCTGCAGGGTCTGTTTGCCCTGGTGACCGAGGAGGATGAAGAG
TCGGGCCTGTGGCGCAGCCAAGACATGCCGGCGCTTCCGTTTACTTTGGACCCCAAGTCCACCTT
TGCATATAGCCAGCCCGAGCTGGTGTCGTCCAACTCGAATTTGGGCACCATCACCGAGTCCTCGG
GCAAATAAACACGGGCCCCGGCCCAGAAGTAGTGAATGAGATGTAGAGAATAGGGAGAGAAGTAG
GGTGTTGCTTATCTCAGGGTTGTTATTTATGACAAGGTCGTTGTTTATGACAGGTTCGTTTATGA
CTGATTTGACTGATTTGCGTTGGTTACTGATTTGCGTTTGACTGATTTGCGTTGATTGACTGATT
TACGTTGTTTGATTACGTTGTTTGATTACGTTGTTTGACTGATTA
Right flanking sequence: Indices 80830 -- 81329
CTTACGTTGTTATGAGTGCTCTGCGTTGACTGATTTGCGTTGCTTACTGATAGTCGTAAGAGCAC
TGGCCTATGGGGCTTAGGCAGAGGCGTTGCTTTGGCAGATGTTGGCCCACTACGCATGCCCACCA
CAACCGGAGTAACTCCGACCAAACCTTGTTTGGTTTCGGAAATGTGCCTACCCGAGTCAGGTCGG
AAACGGCGAAACAAGGTTACGAGAATAAACTGGGGACACTGCGATACCCAATCGGACGGAGCCCA
CAAACTAGGTTGGCAATGCACGCAGGGTTCAGTGTCTGTCGATTCACGGACTGCATTTGCTGTCA
CTGCATGTCGCCTTCAAAGTCAATTGCACCTGCGTTTCCCGGGGTTATGAATCTACTATTCCTGT
TTGTTTGCAAACATGTGCTACAGGCTATTTCCGCCCCACCACGCGGCATGTCATGATTGCCCTCG
GGCGATGTCCGGTGGGGCTACCTTGACAACCCCGACTCTTGGCAT
Found at i:80857 original size:19 final size:19
Alignment explanation
Indices: 80760--80849 Score: 75
Period size: 18 Copynumber: 5.1 Consensus size: 19
80750 CGTTGTTTGA
*
80760 TTACGTTG-TT-TGACTGA
1 TTACGTTGTTTATGACTGC
* *
80777 TTACGTTGTTTACGAC-GG
1 TTACGTTGTTTATGACTGC
* *
80795 GT-CGTTGTTTATGACTGG
1 TTACGTTGTTTATGACTGC
*
80813 GT-CGTTGTTTATGACTGC
1 TTACGTTGTTTATGACTGC
*
80831 TTACGTTG-TTATGAGTGC
1 TTACGTTGTTTATGACTGC
80849 T
1 T
80850 CTGCGTTGAC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
17 20 0.32
18 34 0.55
19 8 0.13
ACGTcount: A:0.14, C:0.13, G:0.28, T:0.44
Consensus pattern (19 bp):
TTACGTTGTTTATGACTGC
Left flanking sequence: Indices 80260 -- 80759
CTGCAGAAGATCCAGACCCACACCAAGACGGTGACGTTTTACAAAAAGGGGTTGCTCAACCCGGA
GGCGCTGCGGCTGCGGCTGGTGCTGCGGGCGCCGCTGGTACGTCTGCAGGGTCTGTTTGCCCTGG
TGACCGAGGAGGATGAAGAGTCGGGCCTGTGGCGCAGCCAAGACATGCCGGCGCTTCCGTTTACT
TTGGACCCCAAGTCCACCTTTGCATATAGCCAGCCCGAGCTGGTGTCGTCCAACTCGAATTTGGG
CACCATCACCGAGTCCTCGGGCAAATAAACACGGGCCCCGGCCCAGAAGTAGTGAATGAGATGTA
GAGAATAGGGAGAGAAGTAGGGTGTTGCTTATCTCAGGGTTGTTATTTATGACAAGGTCGTTGTT
TATGACAGGTTCGTTTATGACTGATTTGACTGATTTGCGTTGGTTACTGATTTGCGTTTGACTGA
TTTGCGTTGATTGACTGATTTACGTTGTTTGATTACGTTGTTTGA
Right flanking sequence: Indices 80850 -- 81349
CTGCGTTGACTGATTTGCGTTGCTTACTGATAGTCGTAAGAGCACTGGCCTATGGGGCTTAGGCA
GAGGCGTTGCTTTGGCAGATGTTGGCCCACTACGCATGCCCACCACAACCGGAGTAACTCCGACC
AAACCTTGTTTGGTTTCGGAAATGTGCCTACCCGAGTCAGGTCGGAAACGGCGAAACAAGGTTAC
GAGAATAAACTGGGGACACTGCGATACCCAATCGGACGGAGCCCACAAACTAGGTTGGCAATGCA
CGCAGGGTTCAGTGTCTGTCGATTCACGGACTGCATTTGCTGTCACTGCATGTCGCCTTCAAAGT
CAATTGCACCTGCGTTTCCCGGGGTTATGAATCTACTATTCCTGTTTGTTTGCAAACATGTGCTA
CAGGCTATTTCCGCCCCACCACGCGGCATGTCATGATTGCCCTCGGGCGATGTCCGGTGGGGCTA
CCTTGACAACCCCGACTCTTGGCATCTTCTGGCACGAGCCGTATC
Found at i:93722 original size:12 final size:12
Alignment explanation
Indices: 93701--93738 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
93691 CAGCCCTCAC
93701 AGGG-GCTGCCA
1 AGGGTGCTGCCA
93712 AGGGTGCTGCCA
1 AGGGTGCTGCCA
93724 AGGGTGCTGCCA
1 AGGGTGCTGCCA
93736 AGG
1 AGG
93739 TCCCCAACGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.18, C:0.24, G:0.45, T:0.13
Consensus pattern (12 bp):
AGGGTGCTGCCA
Left flanking sequence: Indices 93201 -- 93700
TTTTCGGGGAAGAACTTGACGGCGAAGTTGGTGGCCGTGAACTGGGAATCATCCATACAGGTTAA
CAATGACGACAGCCGAATGAATTTGACGGCGGCCACGGTGGATGCCAAGTACATCTGCACCGTGA
GCGCTAACCATAAGTGCCACTTCATTTCCGGATAGACGTCTCGTTGACCAAGTGGCACGAATTTG
TATTTTTTTTCTCGGAAACGCGTCACAGCCTCTTTTGAGTCTGCTGCGCTTTGATCCGGGTTGGC
TGGGGGGACCGGTGGAATACGGGTGGAAAAGAGGGTGTAGGATTGTTGTGGCGAGAACTAAGGCT
ACAAGAGGGGATCGAATGCTTTCCAGGGCTTAGATGCGCCGCTAGCGCCTTGCGATCTCCTGATT
CCGTGCCAAAAAATGACTAGCGAAAGTGCGATTTGGCGTGCTAGTGCAGCCAAGCAAATGCTAAA
TTTCTTGATGTAGGGGCCAAGCCTGGCTTGCTGAGCAGCCCTCAC
Right flanking sequence: Indices 93739 -- 94238
TCCCCAACGTGGTGTTGCTTGCGTGTTTACCTTTGCTACGGACCTGAACGTTGTCGGGTAATGTG
GGGGGTCGCGTTAAAAATAGCGCAGGCTGAGGAAAACGGAGCAGTTACGTGTGCCAACTAAACAG
GGCCGTGGGGCGAAAGCGGTCTTGTGAGTGACTGAGTTCTGACACCTGGAACAGGGGGTGGGCTC
CTTAATTACTGGGGCCGACCACCGTGCTTAAATTACATACGTCTCCTCGCATGGACAACCAGCAG
CGCCCCGGTGGAACAAAGGACCGTCGCTCTCGGCGTTGCCACAACAATGCTACCTGTCACGCGGC
CAGGCACGGCGACAAATCAACGAACATCCCCCGCTATTCGCTGATGGCCTGCGTAACTCCCATTC
TTCTGTCATGACATCATCGGGCATGTTGGGGGGTGGCTGAGTGCATGTACCGAGCGACATTGGCA
CCATCGGTGTGGGCTGGGAATGCGTCAACCGCCAGTTGTCAGGCG
Found at i:102140 original size:23 final size:23
Alignment explanation
Indices: 102110--102193 Score: 141
Period size: 23 Copynumber: 3.7 Consensus size: 23
102100 CACTGGCTGT
* *
102110 TACCACCACTACCCCGAGAATCC
1 TACCACCACTACCCCCAGTATCC
102133 TACCACCACTACCCCCAGTATCC
1 TACCACCACTACCCCCAGTATCC
102156 TACCACCACTACCCCCAGTATCC
1 TACCACCACTACCCCCAGTATCC
*
102179 TACCACCACTTCCCC
1 TACCACCACTACCCC
102194 ACCTCCACCG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.26, C:0.52, G:0.05, T:0.17
Consensus pattern (23 bp):
TACCACCACTACCCCCAGTATCC
Left flanking sequence: Indices 101610 -- 102109
CAATGGCTATCTGTGGCAGCGCACCGAAAACGAGTAAGTATACGGCTACTGCGGACGGGACGGGC
CTGTGCTGGGGTTGCTGGACCGGGTATTCCGCGCCAGCAGCGCTGAGCGCTATAGGCCACCGTGG
AGGATGAGCGATGGCATGGTGGTGTGACATGAGAGGTTGGTCCTGGAGAGACTGGTGTTGGTTAT
GTTTGGCTTAGCTGGAGGGTTTGGGAGGCAAAATGGAGAGGCGATGCGTCGGGGCTGCGCTGGGC
GTTCCGGGCCTTGCGTTACTGACGTGGTGCCTGGTACCTGGATCCGTACCTTGGGTCATCGTCGA
TACTTTCACCTCCAATTTGTTCCGATATGTTCCCTCTGATATCTTTTCCTCGATATCCTCCCTCC
TCCAGTTACTCCCTCCTCCCACCATCAGAGGGTGTATCCAGAAAGTACCGAAGCACCTGAGAGAA
GTTAGGAGACACAAAATCGAGATCTACTACAAAGCCACTGGCTGT
Right flanking sequence: Indices 102194 -- 102693
ACCTCCACCGCTCCTTTCCATTTGTAATACTAACGTTTAGTCCAGCGCAAGATCGTCATTCTTGG
CGATGGTGCCTGTGGTAAAACCTCCCTTTTGAACGTGTTCACCCGGGGCTACTTCCCCCAGGTGT
ACGAGCCCACCGTGTTTGAAAACTACGTCCACGACATTTTCATCGACGGTAAGCAGATCCAGTTG
CTGTTATGGGACACCGCTGGCCAGGAAGAATTCGACCGGTTGCGGTCGTTGTCGTACCTGGACAC
CCACTGCATCATGCTCTGTTTCTCCATCGACTCCCCCGACTCGTTGGAGAACGTCCAGCTGAAGT
GGGTGGGCGAGATCACCGACCACTGCGATGGCGTCAAGTTGGTGTTGGTGGCGCTCAAGTGCGAC
TTGCGGTCCAACGAGGAGACGGACTTGGAGCACAACCCCGAGGAGGAGTTCAACCCCTACGGAGG
CCACCAGCAGAAACGGATGATTTCTTACGACGAGGGGTTGGCGAT
Found at i:105966 original size:13 final size:14
Alignment explanation
Indices: 105948--105979 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
105938 GTAACGGCGA
105948 TGGGTGGT-AACAG
1 TGGGTGGTAAACAG
105961 TGGGTGGTAAACAG
1 TGGGTGGTAAACAG
105975 TGGGT
1 TGGGT
105980 ATACAGAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.22, C:0.06, G:0.47, T:0.25
Consensus pattern (14 bp):
TGGGTGGTAAACAG
Left flanking sequence: Indices 105448 -- 105947
TCCACCTGGCGAGGGGCTAGGAGCGACGGTTTCTCGGGCGACGGGGGCGCTGGCGTCCGTCGGGT
GCGGTTGCGGCGCTCGTCCATCACCCGGTCAAACACCCGGCCCTTGTCTGGCACCGCTGCTGGCG
CAGGAGCCACTCTGCTGAGAGCAGCCCAGTCCACCACCATCGCGTGGATCTTGTCGCCAACAAGG
TAGAAGAGGTACATGAGCGACGTGTACTCAAACACCACGGCGAGTGGACGCTCGCTAAGCACCGC
GGGAGCCACCACGTTGTCGCGGAACCAGCCCGTGGTCTTCGCGTCGGTGGAGGTGACGGCGAGAT
TCGACCATCGGATGACGGAGAGGGGCACGCGTTGGAAGTTGACGTAGCCCGGAACGCGGGTGAGC
GGCCCCGCCGGCGGGGCGATGGTCTCCACGTCGACGTCGAGCGTGGTGCCTTCGTCACAGACCAA
CCTCATGGCTCGGGTGTCGCGCGGTTTGGAGCGATGTAACGGCGA
Right flanking sequence: Indices 105980 -- 106479
ATACAGAAGGGTGGATAGAAAGTGCTACAGGCATCGAGACGGGGTAGAGCGGGTTGAGAATCAGG
GCTGTTGGTTTTTAGACTGGCTAGATCGTGCCACTACGCGATTGTATTGTTTGGGTAAACCAAGA
GTCCTTTCTCATCGATCAAGGTAGGATTGATTTAGCTAGCGTGGGTGATCAGAGTACCAATTCTC
ACTGAATTGACGTGTCACCGGTTCCCAGCTAGAATTCACCACCTCCACCACAGTTTCATCTGAGG
CCCACTGAAATAGTCTGGGCATAAGCGCACATAGCCCGACTTAATGGGACTAAACTTCTTGGCCT
ACTTCTATAGCCATCTTTTCTCTACGTCGCAAGTCTACACGATCCCAGCCTGTGTTGCGCATCCT
TTTAGTGCCCGCAACCGCCATTTGTGTCTTGTACGCTGATCACCCCATTTTGAGCCAAGCCCACC
CGTTTCATCCGTGACGACGAGCGAAACGAAACACCGTAGCCTCCA
Found at i:106587 original size:13 final size:13
Alignment explanation
Indices: 106569--106593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106559 CGATCAGCCG
106569 ACGGTACTCCGAA
1 ACGGTACTCCGAA
106582 ACGGTACTCCGA
1 ACGGTACTCCGA
106594 CACGACACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (13 bp):
ACGGTACTCCGAA
Left flanking sequence: Indices 106069 -- 106568
ATCGTGCCACTACGCGATTGTATTGTTTGGGTAAACCAAGAGTCCTTTCTCATCGATCAAGGTAG
GATTGATTTAGCTAGCGTGGGTGATCAGAGTACCAATTCTCACTGAATTGACGTGTCACCGGTTC
CCAGCTAGAATTCACCACCTCCACCACAGTTTCATCTGAGGCCCACTGAAATAGTCTGGGCATAA
GCGCACATAGCCCGACTTAATGGGACTAAACTTCTTGGCCTACTTCTATAGCCATCTTTTCTCTA
CGTCGCAAGTCTACACGATCCCAGCCTGTGTTGCGCATCCTTTTAGTGCCCGCAACCGCCATTTG
TGTCTTGTACGCTGATCACCCCATTTTGAGCCAAGCCCACCCGTTTCATCCGTGACGACGAGCGA
AACGAAACACCGTAGCCTCCACCCGCCGTAAACATTGTCCCAGGGGTAATTTCATCCCTGCTCGC
ATTCCTGATCGCACCTGCCGTGGTAGTCCGATTGACGATCAGCCG
Right flanking sequence: Indices 106594 -- 107093
CACGACACCCCGAACCCCACCACACCAACAACACTACGTAACCCCTCGTTTTCGTCTCCAATTCC
CACCACCTCTCCACGCTCCGCGTCGTAACTCACCGTATCGTCCCAATCGGGCCCTTTTGCCGCTC
TAGGCAATTTACAACCGTCGTCTCGTAACCACCACCACCGATCTACCCCCGCAACCACCGCCCAA
AACAGCAAAACCCCACCACCAGCGCTCCAACTGCAGTTGCAACCACCCACCCCAGCCCCCCGAGC
CCCGTAACCACCGCTGCTCCCCAGTTTCCCCGAGTTACCCGCGGCATCGCCCTGCAGCCGCACCT
CATCGATAACGCGACTGATTTGAGAACACAGGGCTATGTCTTACAACAAACTGATGGTGAGCGCC
CGGGTATACCTGACGGCACGGGTGTATGCCGACGCCAACGCCAACAAGCCCCAGAGCTACTGGGA
CTACGAAAACCACAAAATCGAGTGGGGCCACATTGGCAGCTACGA
Found at i:108032 original size:21 final size:21
Alignment explanation
Indices: 108006--108063 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
107996 GAGAAGTGGA
108006 GAATAGTGTGAATACGTAGAG
1 GAATAGTGTGAATACGTAGAG
* *
108027 GAATAGTGTGAATGCGTAGTG
1 GAATAGTGTGAATACGTAGAG
108048 GAAATAGTGTGAATAC
1 G-AATAGTGTGAATAC
108064 CCAGTAGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 20 0.61
22 13 0.39
ACGTcount: A:0.36, C:0.05, G:0.33, T:0.26
Consensus pattern (21 bp):
GAATAGTGTGAATACGTAGAG
Left flanking sequence: Indices 107506 -- 108005
CTTGCCGAGTTTTACCACAAGGGGATGGACTACAACGTGCGGGTGGCGCTGAGGTACCACAAGGG
CCCCGAGTTGTTGGTCAACCTCCAGCAGTACGACTACCTGCTTGACTTGTGGCTGGTGGGGTGTA
TGTTGGCGGCGATAGTCCTCAACAAGGAGCCGTTTTTCCGCGGCGACCTGAACAACGACCAGTTG
GTGCAGATCGCCAAGGTGTTGGGCACGGCCGACTTGATGGCCTACGTCAACAAATACGGGCTCAA
GTTGTCGCCCGAATACGACGACATTCTCGGAACTTATCCGCGCAAGCCGTGGTCGCAGTTCATTC
TGAAGGACACCCCGCTTGCGGTGCCCGAGGTGGTGGATCTAATCGACAAGCTCTTGACCTACGAC
CACCAGTTGCGGCCCACGGCGCAGGAGGCAATGGCACACCCGTTCTTCCACACCCAGTACTAGCA
TATTTAATAGATTACTAATACAGACGTTGAAATGAGAGAAGTGGA
Right flanking sequence: Indices 108064 -- 108563
CCAGTAGAAAATAGTGAAGCTTACGTTCCCAGACACCAAGAAAACTCTATTTGAGTGTATGTGAG
TATGACATGGTAAAAAACTCTATTTGATGTATGAGTATGACATGGTAAAAAACTCTATTTGATGT
ATGAGTATGACATGGTAACGTCAAATGAATCTATTCATTACCACAAGCAGACAACAGCCACCACC
GCGTCTCACCCACACCACCCTTTTGTCTGCATCGTGTTCCATATGTACCCCTTCCGTGACAATGC
CACCGAACCTTCGCTGCATCGTAAAATGGATCGACAGCCAAACCTACCCCCTCCTACGCCATCCC
CTCCTACGCCATTCGTAACTCTGTGTAATAAAAATACGTCGCATAAAACTACTTCTCGTGGTCAT
CGTCTATCGTGGGTGTCGGGAGACCCAGCGCGTCGACAGGCGGGCGCGACGAGTCGCCGCTGACC
ACGCCCTCGTGCTCGCTGGCACCCTCCGCCGGCTGGTGGCCGTGG
Found at i:108073 original size:22 final size:22
Alignment explanation
Indices: 108007--108079 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 22
107997 AGAAGTGGAG
*
108007 AATAGTGTGAATACGTAG-AGG
1 AATAGTGTGAATACGTAGTAGA
* *
108028 AATAGTGTGAATGCGTAGTGGA
1 AATAGTGTGAATACGTAGTAGA
**
108050 AATAGTGTGAATACCCAGTAGAA
1 AATAGTGTGAATACGTAGTAG-A
108073 AATAGTG
1 AATAGTG
108080 AAGCTTACGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 17 0.40
22 18 0.42
23 8 0.19
ACGTcount: A:0.38, C:0.07, G:0.30, T:0.25
Consensus pattern (22 bp):
AATAGTGTGAATACGTAGTAGA
Left flanking sequence: Indices 107507 -- 108006
TTGCCGAGTTTTACCACAAGGGGATGGACTACAACGTGCGGGTGGCGCTGAGGTACCACAAGGGC
CCCGAGTTGTTGGTCAACCTCCAGCAGTACGACTACCTGCTTGACTTGTGGCTGGTGGGGTGTAT
GTTGGCGGCGATAGTCCTCAACAAGGAGCCGTTTTTCCGCGGCGACCTGAACAACGACCAGTTGG
TGCAGATCGCCAAGGTGTTGGGCACGGCCGACTTGATGGCCTACGTCAACAAATACGGGCTCAAG
TTGTCGCCCGAATACGACGACATTCTCGGAACTTATCCGCGCAAGCCGTGGTCGCAGTTCATTCT
GAAGGACACCCCGCTTGCGGTGCCCGAGGTGGTGGATCTAATCGACAAGCTCTTGACCTACGACC
ACCAGTTGCGGCCCACGGCGCAGGAGGCAATGGCACACCCGTTCTTCCACACCCAGTACTAGCAT
ATTTAATAGATTACTAATACAGACGTTGAAATGAGAGAAGTGGAG
Right flanking sequence: Indices 108080 -- 108579
AAGCTTACGTTCCCAGACACCAAGAAAACTCTATTTGAGTGTATGTGAGTATGACATGGTAAAAA
ACTCTATTTGATGTATGAGTATGACATGGTAAAAAACTCTATTTGATGTATGAGTATGACATGGT
AACGTCAAATGAATCTATTCATTACCACAAGCAGACAACAGCCACCACCGCGTCTCACCCACACC
ACCCTTTTGTCTGCATCGTGTTCCATATGTACCCCTTCCGTGACAATGCCACCGAACCTTCGCTG
CATCGTAAAATGGATCGACAGCCAAACCTACCCCCTCCTACGCCATCCCCTCCTACGCCATTCGT
AACTCTGTGTAATAAAAATACGTCGCATAAAACTACTTCTCGTGGTCATCGTCTATCGTGGGTGT
CGGGAGACCCAGCGCGTCGACAGGCGGGCGCGACGAGTCGCCGCTGACCACGCCCTCGTGCTCGC
TGGCACCCTCCGCCGGCTGGTGGCCGTGGTGCGGATGCGGCACCG
Found at i:108171 original size:35 final size:35
Alignment explanation
Indices: 108104--108211 Score: 189
Period size: 35 Copynumber: 3.0 Consensus size: 35
108094 AGACACCAAG
108104 AAAACTCTATTTGAGTGTATGTGAGTATGACATGGTAA
1 AAAACTCTATTTGA-TGTA--TGAGTATGACATGGTAA
108142 AAAACTCTATTTGATGTATGAGTATGACATGGTAA
1 AAAACTCTATTTGATGTATGAGTATGACATGGTAA
108177 AAAACTCTATTTGATGTATGAGTATGACATGGTAA
1 AAAACTCTATTTGATGTATGAGTATGACATGGTAA
108212 CGTCAAATGA
Statistics
Matches: 70, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 52 0.74
37 4 0.06
38 14 0.20
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.34
Consensus pattern (35 bp):
AAAACTCTATTTGATGTATGAGTATGACATGGTAA
Left flanking sequence: Indices 107604 -- 108103
CTACCTGCTTGACTTGTGGCTGGTGGGGTGTATGTTGGCGGCGATAGTCCTCAACAAGGAGCCGT
TTTTCCGCGGCGACCTGAACAACGACCAGTTGGTGCAGATCGCCAAGGTGTTGGGCACGGCCGAC
TTGATGGCCTACGTCAACAAATACGGGCTCAAGTTGTCGCCCGAATACGACGACATTCTCGGAAC
TTATCCGCGCAAGCCGTGGTCGCAGTTCATTCTGAAGGACACCCCGCTTGCGGTGCCCGAGGTGG
TGGATCTAATCGACAAGCTCTTGACCTACGACCACCAGTTGCGGCCCACGGCGCAGGAGGCAATG
GCACACCCGTTCTTCCACACCCAGTACTAGCATATTTAATAGATTACTAATACAGACGTTGAAAT
GAGAGAAGTGGAGAATAGTGTGAATACGTAGAGGAATAGTGTGAATGCGTAGTGGAAATAGTGTG
AATACCCAGTAGAAAATAGTGAAGCTTACGTTCCCAGACACCAAG
Right flanking sequence: Indices 108212 -- 108711
CGTCAAATGAATCTATTCATTACCACAAGCAGACAACAGCCACCACCGCGTCTCACCCACACCAC
CCTTTTGTCTGCATCGTGTTCCATATGTACCCCTTCCGTGACAATGCCACCGAACCTTCGCTGCA
TCGTAAAATGGATCGACAGCCAAACCTACCCCCTCCTACGCCATCCCCTCCTACGCCATTCGTAA
CTCTGTGTAATAAAAATACGTCGCATAAAACTACTTCTCGTGGTCATCGTCTATCGTGGGTGTCG
GGAGACCCAGCGCGTCGACAGGCGGGCGCGACGAGTCGCCGCTGACCACGCCCTCGTGCTCGCTG
GCACCCTCCGCCGGCTGGTGGCCGTGGTGCGGATGCGGCACCGCCTCGTCGGCCAGCGTCACCGA
GGCAGTGTCATCCTCGTACTCGCCGTTGTCGTCGATCTTCTCGAGCGGCGCGTGGTTGAGCACCG
GGGTTCCGATAATCGTCGAGGGATAGCTGGGGGTCACCGGGGTGC
Found at i:108391 original size:15 final size:15
Alignment explanation
Indices: 108371--108400 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
108361 CCAAACCTAC
108371 CCCCTCCTACGCCAT
1 CCCCTCCTACGCCAT
108386 CCCCTCCTACGCCAT
1 CCCCTCCTACGCCAT
108401 TCGTAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.60, G:0.07, T:0.20
Consensus pattern (15 bp):
CCCCTCCTACGCCAT
Left flanking sequence: Indices 107871 -- 108370
AATCGACAAGCTCTTGACCTACGACCACCAGTTGCGGCCCACGGCGCAGGAGGCAATGGCACACC
CGTTCTTCCACACCCAGTACTAGCATATTTAATAGATTACTAATACAGACGTTGAAATGAGAGAA
GTGGAGAATAGTGTGAATACGTAGAGGAATAGTGTGAATGCGTAGTGGAAATAGTGTGAATACCC
AGTAGAAAATAGTGAAGCTTACGTTCCCAGACACCAAGAAAACTCTATTTGAGTGTATGTGAGTA
TGACATGGTAAAAAACTCTATTTGATGTATGAGTATGACATGGTAAAAAACTCTATTTGATGTAT
GAGTATGACATGGTAACGTCAAATGAATCTATTCATTACCACAAGCAGACAACAGCCACCACCGC
GTCTCACCCACACCACCCTTTTGTCTGCATCGTGTTCCATATGTACCCCTTCCGTGACAATGCCA
CCGAACCTTCGCTGCATCGTAAAATGGATCGACAGCCAAACCTAC
Right flanking sequence: Indices 108401 -- 108900
TCGTAACTCTGTGTAATAAAAATACGTCGCATAAAACTACTTCTCGTGGTCATCGTCTATCGTGG
GTGTCGGGAGACCCAGCGCGTCGACAGGCGGGCGCGACGAGTCGCCGCTGACCACGCCCTCGTGC
TCGCTGGCACCCTCCGCCGGCTGGTGGCCGTGGTGCGGATGCGGCACCGCCTCGTCGGCCAGCGT
CACCGAGGCAGTGTCATCCTCGTACTCGCCGTTGTCGTCGATCTTCTCGAGCGGCGCGTGGTTGA
GCACCGGGGTTCCGATAATCGTCGAGGGATAGCTGGGGGTCACCGGGGTGCCCGTGGTGGTGGCA
ATGGTGCCGCCCACCATGATCAGCTGCTTGCGCAACTGGGAGAACTCGGGGTCAAAGAGAACCTG
CGAGTGGACAATGAGCTTCTCAAGCACCTGGTTCATCGCGCCAAACTGGTTCACCAACAGGTCGA
GCAGCAGCGCCTCGGTGAGCGCCGGGCCTATCACCGTGGCCAAGT
Found at i:113595 original size:12 final size:12
Alignment explanation
Indices: 113572--113624 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
113562 GTCAGCAGCG
*
113572 GCGCCTGGGTCA
1 GCGCCAGGGTCA
*
113584 GCGCCAGTGTCA
1 GCGCCAGGGTCA
*
113596 GCGCCTGGGTCA
1 GCGCCAGGGTCA
* *
113608 GCGCCTGGGCCA
1 GCGCCAGGGTCA
113620 GCGCC
1 GCGCC
113625 GCGTCGTCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (12 bp):
GCGCCAGGGTCA
Left flanking sequence: Indices 113072 -- 113571
CTTGAGGATCGCCAGCGCCGTGTCCTGCTTGAGCAAGAACCCCATGAAGTTGCTCTCCAAGTGGT
TGACCAACTGCAACACCCGGTCCACCACGGGGTGCCGCTCCACCGTGCCGAGCTTGCCGTCGGCG
ATGGCCTGCAAGTAGTCGCTCACGAGCCGCACCACCACCTCGAACTGCGGGAAGAGCGGGAGGAT
CGCCACCACCGACGACACCGCCTTGGCCTCGTCGGGGCCGGCAAAGAGCATGAAGTGCACGAGCA
GGTCCACCGGCAGCGGGCCAAACTTGCCGGTGTCGGCGTTGTAGTTGAGATCGGGGTGGCGGGAC
GTCTGGAAGTAGGTGACGGTGGGGGGCCCGGTGGCGGCGGTGGCGAGCGGGTCCTCGTCCAAGGT
GGCGGTCAGGTGGTTGCGCCCGCCGTATAGGCTGCCGCCGCTGACAAGCGTGCCCGTGGACAGCG
CTGCGTACGACCCGTAGCCGAACGCCAGCGGCGCTGTCAGCAGCG
Right flanking sequence: Indices 113625 -- 114124
GCGTCGTCGAACTTGTCGGTTTTTGGCGTCATCGGCGTCATCGGCGGGTCGTCCACCAGGAACCG
CTTGAACTGGCTGGTTTTGTACAAATAGAGGTGCGAGCCACGCAACTCGGCCCGATAGGTGCGGG
CGGCGGCGTCGAGGTCGCCGGCGTGGGCGCCGGGAGCCACGTTGAGCCACTGGTGCTTGACCGGG
GTCAGGTCCCACTCCGGACGCACCAACCGCGCGATGTGGTCCACCTGGGGAGTGGCGGGTGCACC
CGCGAGGTCGCGGGGGTGCGACGCGTCGTCGGCGGACGCGGCGAGCGACACCGTGGCAGCGTACC
CGGCGCCGCTGCCCATCAGCTTGCGCTTATCTCGGTCTTTCCGTGACGACCAGATCTTTCTCATC
GACGGTGCACGGACTCGGGAACGTGAGGTGTCTTTTGGCGCGACGTGTGTTTATTTGAATTTTTG
GTGCAAAATTTTAGCCTGCTGCGGATATTTTTTTGGAGCCCGCGA
Found at i:113621 original size:24 final size:24
Alignment explanation
Indices: 113572--113624 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
113562 GTCAGCAGCG
* *
113572 GCGCCTGGGTCAGCGCCAGTGTCA
1 GCGCCTGGGTCAGCGCCAGGGCCA
*
113596 GCGCCTGGGTCAGCGCCTGGGCCA
1 GCGCCTGGGTCAGCGCCAGGGCCA
113620 GCGCC
1 GCGCC
113625 GCGTCGTCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (24 bp):
GCGCCTGGGTCAGCGCCAGGGCCA
Left flanking sequence: Indices 113072 -- 113571
CTTGAGGATCGCCAGCGCCGTGTCCTGCTTGAGCAAGAACCCCATGAAGTTGCTCTCCAAGTGGT
TGACCAACTGCAACACCCGGTCCACCACGGGGTGCCGCTCCACCGTGCCGAGCTTGCCGTCGGCG
ATGGCCTGCAAGTAGTCGCTCACGAGCCGCACCACCACCTCGAACTGCGGGAAGAGCGGGAGGAT
CGCCACCACCGACGACACCGCCTTGGCCTCGTCGGGGCCGGCAAAGAGCATGAAGTGCACGAGCA
GGTCCACCGGCAGCGGGCCAAACTTGCCGGTGTCGGCGTTGTAGTTGAGATCGGGGTGGCGGGAC
GTCTGGAAGTAGGTGACGGTGGGGGGCCCGGTGGCGGCGGTGGCGAGCGGGTCCTCGTCCAAGGT
GGCGGTCAGGTGGTTGCGCCCGCCGTATAGGCTGCCGCCGCTGACAAGCGTGCCCGTGGACAGCG
CTGCGTACGACCCGTAGCCGAACGCCAGCGGCGCTGTCAGCAGCG
Right flanking sequence: Indices 113625 -- 114124
GCGTCGTCGAACTTGTCGGTTTTTGGCGTCATCGGCGTCATCGGCGGGTCGTCCACCAGGAACCG
CTTGAACTGGCTGGTTTTGTACAAATAGAGGTGCGAGCCACGCAACTCGGCCCGATAGGTGCGGG
CGGCGGCGTCGAGGTCGCCGGCGTGGGCGCCGGGAGCCACGTTGAGCCACTGGTGCTTGACCGGG
GTCAGGTCCCACTCCGGACGCACCAACCGCGCGATGTGGTCCACCTGGGGAGTGGCGGGTGCACC
CGCGAGGTCGCGGGGGTGCGACGCGTCGTCGGCGGACGCGGCGAGCGACACCGTGGCAGCGTACC
CGGCGCCGCTGCCCATCAGCTTGCGCTTATCTCGGTCTTTCCGTGACGACCAGATCTTTCTCATC
GACGGTGCACGGACTCGGGAACGTGAGGTGTCTTTTGGCGCGACGTGTGTTTATTTGAATTTTTG
GTGCAAAATTTTAGCCTGCTGCGGATATTTTTTTGGAGCCCGCGA
Found at i:114265 original size:8 final size:8
Alignment explanation
Indices: 114252--114303 Score: 95
Period size: 8 Copynumber: 6.5 Consensus size: 8
114242 TGTGGGTGGT
114252 GTGGTAGA
1 GTGGTAGA
114260 GTGGTAGA
1 GTGGTAGA
114268 GTGGTAGA
1 GTGGTAGA
114276 GTGGTAGA
1 GTGGTAGA
*
114284 TTGGTAGA
1 GTGGTAGA
114292 GTGGTAGA
1 GTGGTAGA
114300 GTGG
1 GTGG
114304 GTGATTTGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 42 1.00
ACGTcount: A:0.23, C:0.00, G:0.50, T:0.27
Consensus pattern (8 bp):
GTGGTAGA
Left flanking sequence: Indices 113752 -- 114251
GGGCGGCGGCGTCGAGGTCGCCGGCGTGGGCGCCGGGAGCCACGTTGAGCCACTGGTGCTTGACC
GGGGTCAGGTCCCACTCCGGACGCACCAACCGCGCGATGTGGTCCACCTGGGGAGTGGCGGGTGC
ACCCGCGAGGTCGCGGGGGTGCGACGCGTCGTCGGCGGACGCGGCGAGCGACACCGTGGCAGCGT
ACCCGGCGCCGCTGCCCATCAGCTTGCGCTTATCTCGGTCTTTCCGTGACGACCAGATCTTTCTC
ATCGACGGTGCACGGACTCGGGAACGTGAGGTGTCTTTTGGCGCGACGTGTGTTTATTTGAATTT
TTGGTGCAAAATTTTAGCCTGCTGCGGATATTTTTTTGGAGCCCGCGAGGAGGGGGAACGAGCCC
GTCAGGGGGATCGGTCAATTGGTGGTGAGGGGTGGTGGTGGTGGTGGTGGGCGAGGGGTGTGGGG
TGTAGGTAAGGGTGGTAGAGTGGGAGAATGGGTGGTGTGGGTGGT
Right flanking sequence: Indices 114304 -- 114803
GTGATTTGGTGAGGTGGTGAGGTGGTGTGAATGTGGGTGGTGGTTTACGCGGTTTACGTAGGGAG
TGTAGGGGTTACGGACGTGTTCGCGGCCGTGGCATTGGCGTGGTTTGGCGGTGGTTGGCGGGGGT
TGGCGGTGGTTTGGCGTGGTTTAGGGCGCCCAGGGACACCAGGCGCCGGTCAGGTGGGTGACGCT
GGTGTAGGCAAGGTGGGTGACGGGTGCGTGGATGACAAGTGCGTGGGTGGGTTGTGTGTAGGGTG
GAGGAGACGAGTGCGTGGTGACGCGTGGGTTACGGCTACGGGTGGGGTACGTTCTGGGCTGGTTA
TGGGACGGCTATGTGGTTGCGTGTGGTTGCGTGTGGCACGCTGGTACGCTGGTACGCCTTGCCTC
CTCCAGTCACGAGCTTGGCTCCACATTCCGACGCCAGAATTCCATCGTCGATTAGCCTTCCCTGG
CAAGTCGTGCGTCGAGCCGCTGTCGCCTCCAAAAAATAATCAGGG
Found at i:114328 original size:25 final size:26
Alignment explanation
Indices: 114261--114333 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 26
114251 TGTGGTAGAG
*
114261 TGGTAGAGTGGTAGAGTGGT-AGA-T
1 TGGTAGAGTGGTAGAGTGGTGTGATT
114285 TGGTAGAGTGGTAGAGTGG-GTGATT
1 TGGTAGAGTGGTAGAGTGGTGTGATT
114310 TGGT-GAGGTGGT-GAGGTGGTGTGA
1 TGGTAGA-GTGGTAGA-GTGGTGTGA
114334 ATGTGGGTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
24 25 0.58
25 14 0.33
26 4 0.09
ACGTcount: A:0.19, C:0.00, G:0.51, T:0.30
Consensus pattern (26 bp):
TGGTAGAGTGGTAGAGTGGTGTGATT
Left flanking sequence: Indices 113761 -- 114260
CGTCGAGGTCGCCGGCGTGGGCGCCGGGAGCCACGTTGAGCCACTGGTGCTTGACCGGGGTCAGG
TCCCACTCCGGACGCACCAACCGCGCGATGTGGTCCACCTGGGGAGTGGCGGGTGCACCCGCGAG
GTCGCGGGGGTGCGACGCGTCGTCGGCGGACGCGGCGAGCGACACCGTGGCAGCGTACCCGGCGC
CGCTGCCCATCAGCTTGCGCTTATCTCGGTCTTTCCGTGACGACCAGATCTTTCTCATCGACGGT
GCACGGACTCGGGAACGTGAGGTGTCTTTTGGCGCGACGTGTGTTTATTTGAATTTTTGGTGCAA
AATTTTAGCCTGCTGCGGATATTTTTTTGGAGCCCGCGAGGAGGGGGAACGAGCCCGTCAGGGGG
ATCGGTCAATTGGTGGTGAGGGGTGGTGGTGGTGGTGGTGGGCGAGGGGTGTGGGGTGTAGGTAA
GGGTGGTAGAGTGGGAGAATGGGTGGTGTGGGTGGTGTGGTAGAG
Right flanking sequence: Indices 114334 -- 114833
ATGTGGGTGGTGGTTTACGCGGTTTACGTAGGGAGTGTAGGGGTTACGGACGTGTTCGCGGCCGT
GGCATTGGCGTGGTTTGGCGGTGGTTGGCGGGGGTTGGCGGTGGTTTGGCGTGGTTTAGGGCGCC
CAGGGACACCAGGCGCCGGTCAGGTGGGTGACGCTGGTGTAGGCAAGGTGGGTGACGGGTGCGTG
GATGACAAGTGCGTGGGTGGGTTGTGTGTAGGGTGGAGGAGACGAGTGCGTGGTGACGCGTGGGT
TACGGCTACGGGTGGGGTACGTTCTGGGCTGGTTATGGGACGGCTATGTGGTTGCGTGTGGTTGC
GTGTGGCACGCTGGTACGCTGGTACGCCTTGCCTCCTCCAGTCACGAGCTTGGCTCCACATTCCG
ACGCCAGAATTCCATCGTCGATTAGCCTTCCCTGGCAAGTCGTGCGTCGAGCCGCTGTCGCCTCC
AAAAAATAATCAGGGTGTCGGAACCCGGATTCGACTGGAACGCGA
Found at i:114418 original size:10 final size:10
Alignment explanation
Indices: 114403--114455 Score: 63
Period size: 10 Copynumber: 5.2 Consensus size: 10
114393 GGCCGTGGCA
114403 TTGGCGTGGT
1 TTGGCGTGGT
114413 TTGGCGGTGG-
1 TTGGC-GTGGT
* *
114423 TTGGCGGGGG
1 TTGGCGTGGT
114433 TTGGCGGTGGT
1 TTGGC-GTGGT
114444 TTGGCGTGGT
1 TTGGCGTGGT
114454 TT
1 TT
114456 AGGGCGCCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 3 0.08
10 22 0.59
11 12 0.32
ACGTcount: A:0.00, C:0.09, G:0.55, T:0.36
Consensus pattern (10 bp):
TTGGCGTGGT
Left flanking sequence: Indices 113903 -- 114402
CGACGCGTCGTCGGCGGACGCGGCGAGCGACACCGTGGCAGCGTACCCGGCGCCGCTGCCCATCA
GCTTGCGCTTATCTCGGTCTTTCCGTGACGACCAGATCTTTCTCATCGACGGTGCACGGACTCGG
GAACGTGAGGTGTCTTTTGGCGCGACGTGTGTTTATTTGAATTTTTGGTGCAAAATTTTAGCCTG
CTGCGGATATTTTTTTGGAGCCCGCGAGGAGGGGGAACGAGCCCGTCAGGGGGATCGGTCAATTG
GTGGTGAGGGGTGGTGGTGGTGGTGGTGGGCGAGGGGTGTGGGGTGTAGGTAAGGGTGGTAGAGT
GGGAGAATGGGTGGTGTGGGTGGTGTGGTAGAGTGGTAGAGTGGTAGAGTGGTAGATTGGTAGAG
TGGTAGAGTGGGTGATTTGGTGAGGTGGTGAGGTGGTGTGAATGTGGGTGGTGGTTTACGCGGTT
TACGTAGGGAGTGTAGGGGTTACGGACGTGTTCGCGGCCGTGGCA
Right flanking sequence: Indices 114456 -- 114955
AGGGCGCCCAGGGACACCAGGCGCCGGTCAGGTGGGTGACGCTGGTGTAGGCAAGGTGGGTGACG
GGTGCGTGGATGACAAGTGCGTGGGTGGGTTGTGTGTAGGGTGGAGGAGACGAGTGCGTGGTGAC
GCGTGGGTTACGGCTACGGGTGGGGTACGTTCTGGGCTGGTTATGGGACGGCTATGTGGTTGCGT
GTGGTTGCGTGTGGCACGCTGGTACGCTGGTACGCCTTGCCTCCTCCAGTCACGAGCTTGGCTCC
ACATTCCGACGCCAGAATTCCATCGTCGATTAGCCTTCCCTGGCAAGTCGTGCGTCGAGCCGCTG
TCGCCTCCAAAAAATAATCAGGGTGTCGGAACCCGGATTCGACTGGAACGCGAGTGGCCGGCGGC
GCCATCGAGGGCGCCCTGGCACCGCTGGCGGCGGGAGCCCGAGGCGAGGCGGCCCACCGCACCAC
CACGCCACCGGGCCCGCGGTGGCCCCGTCAGCCGGCCCTGACTCG
Found at i:114428 original size:20 final size:21
Alignment explanation
Indices: 114403--114455 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
114393 GGCCGTGGCA
114403 TTGGCGTGGTTTGGCGGTGG-
1 TTGGCGTGGTTTGGCGGTGGT
* *
114423 TTGGCGGGGGTTGGCGGTGGT
1 TTGGCGTGGTTTGGCGGTGGT
114444 TTGGCGTGGTTT
1 TTGGCGTGGTTT
114456 AGGGCGCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.00, C:0.09, G:0.55, T:0.36
Consensus pattern (21 bp):
TTGGCGTGGTTTGGCGGTGGT
Left flanking sequence: Indices 113903 -- 114402
CGACGCGTCGTCGGCGGACGCGGCGAGCGACACCGTGGCAGCGTACCCGGCGCCGCTGCCCATCA
GCTTGCGCTTATCTCGGTCTTTCCGTGACGACCAGATCTTTCTCATCGACGGTGCACGGACTCGG
GAACGTGAGGTGTCTTTTGGCGCGACGTGTGTTTATTTGAATTTTTGGTGCAAAATTTTAGCCTG
CTGCGGATATTTTTTTGGAGCCCGCGAGGAGGGGGAACGAGCCCGTCAGGGGGATCGGTCAATTG
GTGGTGAGGGGTGGTGGTGGTGGTGGTGGGCGAGGGGTGTGGGGTGTAGGTAAGGGTGGTAGAGT
GGGAGAATGGGTGGTGTGGGTGGTGTGGTAGAGTGGTAGAGTGGTAGAGTGGTAGATTGGTAGAG
TGGTAGAGTGGGTGATTTGGTGAGGTGGTGAGGTGGTGTGAATGTGGGTGGTGGTTTACGCGGTT
TACGTAGGGAGTGTAGGGGTTACGGACGTGTTCGCGGCCGTGGCA
Right flanking sequence: Indices 114456 -- 114955
AGGGCGCCCAGGGACACCAGGCGCCGGTCAGGTGGGTGACGCTGGTGTAGGCAAGGTGGGTGACG
GGTGCGTGGATGACAAGTGCGTGGGTGGGTTGTGTGTAGGGTGGAGGAGACGAGTGCGTGGTGAC
GCGTGGGTTACGGCTACGGGTGGGGTACGTTCTGGGCTGGTTATGGGACGGCTATGTGGTTGCGT
GTGGTTGCGTGTGGCACGCTGGTACGCTGGTACGCCTTGCCTCCTCCAGTCACGAGCTTGGCTCC
ACATTCCGACGCCAGAATTCCATCGTCGATTAGCCTTCCCTGGCAAGTCGTGCGTCGAGCCGCTG
TCGCCTCCAAAAAATAATCAGGGTGTCGGAACCCGGATTCGACTGGAACGCGAGTGGCCGGCGGC
GCCATCGAGGGCGCCCTGGCACCGCTGGCGGCGGGAGCCCGAGGCGAGGCGGCCCACCGCACCAC
CACGCCACCGGGCCCGCGGTGGCCCCGTCAGCCGGCCCTGACTCG
Found at i:114655 original size:10 final size:10
Alignment explanation
Indices: 114640--114664 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
114630 GGGACGGCTA
114640 TGTGGTTGCG
1 TGTGGTTGCG
114650 TGTGGTTGCG
1 TGTGGTTGCG
114660 TGTGG
1 TGTGG
114665 CACGCTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.52, T:0.40
Consensus pattern (10 bp):
TGTGGTTGCG
Left flanking sequence: Indices 114140 -- 114639
CCGTCAGGGGGATCGGTCAATTGGTGGTGAGGGGTGGTGGTGGTGGTGGTGGGCGAGGGGTGTGG
GGTGTAGGTAAGGGTGGTAGAGTGGGAGAATGGGTGGTGTGGGTGGTGTGGTAGAGTGGTAGAGT
GGTAGAGTGGTAGATTGGTAGAGTGGTAGAGTGGGTGATTTGGTGAGGTGGTGAGGTGGTGTGAA
TGTGGGTGGTGGTTTACGCGGTTTACGTAGGGAGTGTAGGGGTTACGGACGTGTTCGCGGCCGTG
GCATTGGCGTGGTTTGGCGGTGGTTGGCGGGGGTTGGCGGTGGTTTGGCGTGGTTTAGGGCGCCC
AGGGACACCAGGCGCCGGTCAGGTGGGTGACGCTGGTGTAGGCAAGGTGGGTGACGGGTGCGTGG
ATGACAAGTGCGTGGGTGGGTTGTGTGTAGGGTGGAGGAGACGAGTGCGTGGTGACGCGTGGGTT
ACGGCTACGGGTGGGGTACGTTCTGGGCTGGTTATGGGACGGCTA
Right flanking sequence: Indices 114665 -- 115164
CACGCTGGTACGCTGGTACGCCTTGCCTCCTCCAGTCACGAGCTTGGCTCCACATTCCGACGCCA
GAATTCCATCGTCGATTAGCCTTCCCTGGCAAGTCGTGCGTCGAGCCGCTGTCGCCTCCAAAAAA
TAATCAGGGTGTCGGAACCCGGATTCGACTGGAACGCGAGTGGCCGGCGGCGCCATCGAGGGCGC
CCTGGCACCGCTGGCGGCGGGAGCCCGAGGCGAGGCGGCCCACCGCACCACCACGCCACCGGGCC
CGCGGTGGCCCCGTCAGCCGGCCCTGACTCGTCCTGCACTCCCCGATTCGCCATGCTTGACGCCT
CGTGACGACACTCCGAGACCCACCAGTTCAGGGGGTGGGGAGCGGAAACCACGTGTTTTGCGGGC
AGTTCGAGCGGGGCCATTGTAGAAGACGGCAGTAGGGCCTCGTCCACGGGCACCGCGCGTGCTCC
GCGTGGAACGTGCGGGTTCCTCGGGCCTGGCAATGACGCCACGTT
Found at i:115389 original size:17 final size:17
Alignment explanation
Indices: 115353--115399 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
115343 TTAGTCTACG
115353 GGGTGGCCGCGTACTGTGGTT
1 GGGTGGCCGCG---TGTGG-T
115374 GGGT-GCCGCGTGTGGT
1 GGGTGGCCGCGTGTGGT
115390 GGGTGGCCGC
1 GGGTGGCCGC
115400 ACACCGTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.20
17 10 0.40
20 6 0.24
21 4 0.16
ACGTcount: A:0.02, C:0.21, G:0.53, T:0.23
Consensus pattern (17 bp):
GGGTGGCCGCGTGTGGT
Left flanking sequence: Indices 114853 -- 115352
AGGGCGCCCTGGCACCGCTGGCGGCGGGAGCCCGAGGCGAGGCGGCCCACCGCACCACCACGCCA
CCGGGCCCGCGGTGGCCCCGTCAGCCGGCCCTGACTCGTCCTGCACTCCCCGATTCGCCATGCTT
GACGCCTCGTGACGACACTCCGAGACCCACCAGTTCAGGGGGTGGGGAGCGGAAACCACGTGTTT
TGCGGGCAGTTCGAGCGGGGCCATTGTAGAAGACGGCAGTAGGGCCTCGTCCACGGGCACCGCGC
GTGCTCCGCGTGGAACGTGCGGGTTCCTCGGGCCTGGCAATGACGCCACGTTTCACGCAGTTTAT
GCACCATCTCCCCAGCGATCGGGTGACTTTACCCAGGGACCGGGTCCGTGGCCACCACAACGGGT
TCCCCTCTTTTGCGGCATCGCCGTTGGCGAGGTTAAAGTTTAAGCTAGCGCCGATCCACGCATTG
GCCCACGCCTCGCTCGTACCGAGTGGTTAGTCCCATTAGTCTACG
Right flanking sequence: Indices 115400 -- 115899
ACACCGTGGTGTGGGTCAGCAGGTGATAGCCGAGGGACAGGCAAACGGGCTACGTGGCAACGTGG
CTGGCGGGCGTGTCGCGTATCACGGACCCTGGCGTCGCCAGCTGCTGCTCGGCCGCGGCGGGTGG
GGTCCAGTGGACACTATCGCCTCGTTCTATAAGCGAGATACTGGGTTGGCTGGGCTGCAGTTTGT
GTATGCGTGTCGCCGGTAAGAGGTGGCGAGGGAACGCTGACGCATGGAGTCCAACCACTACGAAT
CGAACCGCTTCGAGTCCAACCACTACGAGCCAAACCACTACGAGTCCAGCCACTACACGAGCCCA
ACTGCTATTTTCTAGTAACCCCGTAGGGCACAGCCACGAACTACGACGGGCTCGAATAGGCACCA
CTAACGATAATATTCGCGATTAAGCTTTTCGCGTCATCCTAACAGAAAGCGGCCAAAATACCTGC
ATCATCAAGCATCTGTGCTAAAAAATAGGCGCAGTATACACGCCG
Found at i:115680 original size:15 final size:15
Alignment explanation
Indices: 115641--115715 Score: 89
Period size: 15 Copynumber: 5.0 Consensus size: 15
115631 CTGACGCATG
115641 GAGTCCAACCACTAC
1 GAGTCCAACCACTAC
* * * *
115656 GAATCGAACCGCTTC
1 GAGTCCAACCACTAC
115671 GAGTCCAACCACTAC
1 GAGTCCAACCACTAC
115686 GAG-CCAAACCACTAC
1 GAGTCC-AACCACTAC
*
115701 GAGTCCAGCCACTAC
1 GAGTCCAACCACTAC
115716 ACGAGCCCAA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
14 2 0.04
15 45 0.92
16 2 0.04
ACGTcount: A:0.32, C:0.39, G:0.16, T:0.13
Consensus pattern (15 bp):
GAGTCCAACCACTAC
Left flanking sequence: Indices 115141 -- 115640
CGGGCCTGGCAATGACGCCACGTTTCACGCAGTTTATGCACCATCTCCCCAGCGATCGGGTGACT
TTACCCAGGGACCGGGTCCGTGGCCACCACAACGGGTTCCCCTCTTTTGCGGCATCGCCGTTGGC
GAGGTTAAAGTTTAAGCTAGCGCCGATCCACGCATTGGCCCACGCCTCGCTCGTACCGAGTGGTT
AGTCCCATTAGTCTACGGGGTGGCCGCGTACTGTGGTTGGGTGCCGCGTGTGGTGGGTGGCCGCA
CACCGTGGTGTGGGTCAGCAGGTGATAGCCGAGGGACAGGCAAACGGGCTACGTGGCAACGTGGC
TGGCGGGCGTGTCGCGTATCACGGACCCTGGCGTCGCCAGCTGCTGCTCGGCCGCGGCGGGTGGG
GTCCAGTGGACACTATCGCCTCGTTCTATAAGCGAGATACTGGGTTGGCTGGGCTGCAGTTTGTG
TATGCGTGTCGCCGGTAAGAGGTGGCGAGGGAACGCTGACGCATG
Right flanking sequence: Indices 115716 -- 116215
ACGAGCCCAACTGCTATTTTCTAGTAACCCCGTAGGGCACAGCCACGAACTACGACGGGCTCGAA
TAGGCACCACTAACGATAATATTCGCGATTAAGCTTTTCGCGTCATCCTAACAGAAAGCGGCCAA
AATACCTGCATCATCAAGCATCTGTGCTAAAAAATAGGCGCAGTATACACGCCGTGGAGGCCACC
ACCGCCAGGGGACCACGATAACCCCGCGTTGTCCTCCACCACACCGGGGGGCCGCAGACGGCGCT
AGCAGCAACCGCAGATCCCACCCGGAACCGACATGCCAACCGTGCATTCCCCGACACGCACCACG
AGTGGGCCGAGCCCGTTCGGGACATAACGCCCGGCTCCCGGCAGCACGACACGTCGTCTAGGGAT
ATTTTTTCCGGCCGGGATAATCGTTCGATGAAACCATTGTTAGACGCCAGCGACGGTAGCCGAGC
CAGGGTGACACCGCCACCGCCGCCCAGCGGGCCATTGTTGTGGTG
Found at i:116509 original size:80 final size:82
Alignment explanation
Indices: 116376--116551 Score: 266
Period size: 80 Copynumber: 2.2 Consensus size: 82
116366 AGACCAGTAA
* * * **
116376 AAAATAGAACGGGCTGTCTCAACCATCTCGTGGGGGCCACTGGCGATTGTAGACC-GCGGTGACG
1 AAAATAGAACGGGCTGTCTCAACCATCTCGTGGGGGCCACCGGCAATTATAGACCTAAGGTGACG
116440 TCA-TGGAGACCACCAG
66 TCATTGGAGACCACCAG
116456 AAAATAGAACGGGCTGTCTCAACCATCTCGTGGGGGCCACCGGCAATTATAGACCTAAGGTGACG
1 AAAATAGAACGGGCTGTCTCAACCATCTCGTGGGGGCCACCGGCAATTATAGACCTAAGGTGACG
*
116521 TCATTGGAGACCGCCAG
66 TCATTGGAGACCACCAG
**
116538 TTAATAGAACGGGC
1 AAAATAGAACGGGC
116552 AGTCCCAAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 52 0.60
81 10 0.12
82 24 0.28
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (82 bp):
AAAATAGAACGGGCTGTCTCAACCATCTCGTGGGGGCCACCGGCAATTATAGACCTAAGGTGACG
TCATTGGAGACCACCAG
Left flanking sequence: Indices 115876 -- 116375
AAAATAGGCGCAGTATACACGCCGTGGAGGCCACCACCGCCAGGGGACCACGATAACCCCGCGTT
GTCCTCCACCACACCGGGGGGCCGCAGACGGCGCTAGCAGCAACCGCAGATCCCACCCGGAACCG
ACATGCCAACCGTGCATTCCCCGACACGCACCACGAGTGGGCCGAGCCCGTTCGGGACATAACGC
CCGGCTCCCGGCAGCACGACACGTCGTCTAGGGATATTTTTTCCGGCCGGGATAATCGTTCGATG
AAACCATTGTTAGACGCCAGCGACGGTAGCCGAGCCAGGGTGACACCGCCACCGCCGCCCAGCGG
GCCATTGTTGTGGTGCTACGCCACCTGCGCGCGTGTCAAGTGCCGGTGCCAAGATTCGCAATTCC
CGCAAATCCGGGGTAACTCCGGCTATTCAGTGTTTGGCCACTGCATCGTCTAGCGGTGGTTAATT
ATAGACCCGTGACGTCATGGAGACCGCCAGAAAATAGACCAGTAA
Right flanking sequence: Indices 116552 -- 117051
AGTCCCAAATCGTGAAGAATCATCTCGTGCAGTCTCATCTCGCACAGTCTCATCTCGTACAGTCC
CAAACCATCTCGTGGCTCCAGTGGCATATTTTAGATCTACGGTCCCAGTAATTATCCAATAAATA
TGTATTCCCAATTGACTGTGGCTAACTAAACCCAAACGCCACAATCAAATACAAGTTAAGTACAG
TGATAAACCCCCACACCACCACCGCAAGCACCGCCACCCACGCCAGGTTGGCGTAGTCCTGGTAC
CCGGTGCACCGGAACCCGTCCTCGGGATCGGTGAACGGCAGCGGCTCGGGCGGCACCAACGTCAG
CGCCAGCGGCTGCGCCAGCACGGGGGCATCGATGAGCCGCTGCCGCTGCTGCCACTCGGTGTCGG
TCTCATCGTCGTCAAAGTTGCCGCACGGATGCAGGTTGCGCAAGTCCTGGAGCTTGATCGCCAGC
GGCAGCGCCTTGAACGGGTGGGTCATCAGGTCGCTGCGCACCCGG
Found at i:116589 original size:15 final size:15
Alignment explanation
Indices: 116571--116615 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
116561 TCGTGAAGAA
*
116571 TCATCTCGTGCAGTC
1 TCATCTCGTACAGTC
*
116586 TCATCTCGCACAGTC
1 TCATCTCGTACAGTC
116601 TCATCTCGTACAGTC
1 TCATCTCGTACAGTC
116616 CCAAACCATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.18, C:0.36, G:0.16, T:0.31
Consensus pattern (15 bp):
TCATCTCGTACAGTC
Left flanking sequence: Indices 116071 -- 116570
CCGGCTCCCGGCAGCACGACACGTCGTCTAGGGATATTTTTTCCGGCCGGGATAATCGTTCGATG
AAACCATTGTTAGACGCCAGCGACGGTAGCCGAGCCAGGGTGACACCGCCACCGCCGCCCAGCGG
GCCATTGTTGTGGTGCTACGCCACCTGCGCGCGTGTCAAGTGCCGGTGCCAAGATTCGCAATTCC
CGCAAATCCGGGGTAACTCCGGCTATTCAGTGTTTGGCCACTGCATCGTCTAGCGGTGGTTAATT
ATAGACCCGTGACGTCATGGAGACCGCCAGAAAATAGACCAGTAAAAAATAGAACGGGCTGTCTC
AACCATCTCGTGGGGGCCACTGGCGATTGTAGACCGCGGTGACGTCATGGAGACCACCAGAAAAT
AGAACGGGCTGTCTCAACCATCTCGTGGGGGCCACCGGCAATTATAGACCTAAGGTGACGTCATT
GGAGACCGCCAGTTAATAGAACGGGCAGTCCCAAATCGTGAAGAA
Right flanking sequence: Indices 116616 -- 117115
CCAAACCATCTCGTGGCTCCAGTGGCATATTTTAGATCTACGGTCCCAGTAATTATCCAATAAAT
ATGTATTCCCAATTGACTGTGGCTAACTAAACCCAAACGCCACAATCAAATACAAGTTAAGTACA
GTGATAAACCCCCACACCACCACCGCAAGCACCGCCACCCACGCCAGGTTGGCGTAGTCCTGGTA
CCCGGTGCACCGGAACCCGTCCTCGGGATCGGTGAACGGCAGCGGCTCGGGCGGCACCAACGTCA
GCGCCAGCGGCTGCGCCAGCACGGGGGCATCGATGAGCCGCTGCCGCTGCTGCCACTCGGTGTCG
GTCTCATCGTCGTCAAAGTTGCCGCACGGATGCAGGTTGCGCAAGTCCTGGAGCTTGATCGCCAG
CGGCAGCGCCTTGAACGGGTGGGTCATCAGGTCGCTGCGCACCCGGCCCTCGGGCTGCACCCGCG
GCTCGTCGCCGTCGCGCACCATGATGGGCACCCGCATGATGTGCT
Found at i:117476 original size:6 final size:6
Alignment explanation
Indices: 117465--117498 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
117455 AGTCCTCGTG
117465 GTCGGA GTCGGA GTCGGA GTCGGA GTCGGA GTCG
1 GTCGGA GTCGGA GTCGGA GTCGGA GTCGGA GTCG
117499 TCGCGAGGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.18, G:0.50, T:0.18
Consensus pattern (6 bp):
GTCGGA
Left flanking sequence: Indices 116965 -- 117464
CACGGATGCAGGTTGCGCAAGTCCTGGAGCTTGATCGCCAGCGGCAGCGCCTTGAACGGGTGGGT
CATCAGGTCGCTGCGCACCCGGCCCTCGGGCTGCACCCGCGGCTCGTCGCCGTCGCGCACCATGA
TGGGCACCCGCATGATGTGCTTCAGACAGGTGAAGTAGATGAGCGGGGCGGTGACCACAGGCAAC
AAGAGCAGCAACACCACTTGGGACCCGTTCAAAATGCTCAGGAGGCCCTCGCGGCCCAGCATCGT
CACCACCACCAAGCACGGGGCGATGGCGAGCGCACGGGTGATGAGCCGTCGGGTCACGGGGGGAA
ACAGCCAGTTGAGGTACCCCTCGCTGACCATCTGCCCAGCCAACGTGCACACCACCCCGGCACTC
TGGCCCAGGCAGAGAAGCGCGAGCGCAAATACAAACCCGGCGGTGGGCAGCAAGTGTTTTGTCAA
GAGGTTGTAGATGGTGAACAAGTCGGCGTTCAGGTAGTCCTCGTG
Right flanking sequence: Indices 117499 -- 117998
TCGCGAGGCGCCACCGCCTGTGCCCACGGGTCGCGCTGGGTGTTGTCGGCACCGAGGGTGGCACC
GGCCACGATGAGAATCGCCAGGTTGACGAAAAGCGCCACGGTAAAGAGGGAGACCACGAGCTCCC
AGATGGTGTAGTGCATGGTGGCGTTGATGGCGTGCACCAGCGGGCGGTACCCGTCGTCGTCGTCG
TCGGCGATCGTCAGGGTGTCCAGTGCCGGGCCCATCAGCGGGCCCACCGCCGGGCTCGGCTCCGG
GTCGGGCTCGTCGGGCGCGGGGCCGCGCGAGCACGCCAGCAGCTCGTAGTGGCCGTGCTTGATGT
CAAAGTCCTTGAGCCGCGCTTGCACGAGCCCCAGGCCCAAGTACAACGAGTGGGGCATCACGGTG
GCCCCGAGGATCGCGAGCGACAAGTAGAGGCCCAGCAGGTTGGCGCCGCCCTTGCCGTTCATGTC
CACGACGGCGGGGCTGGGGAGAAACCCCTTGAACACCTCCCACGA
Found at i:119649 original size:9 final size:9
Alignment explanation
Indices: 119635--119704 Score: 95
Period size: 9 Copynumber: 7.8 Consensus size: 9
119625 GGGCAGCGTC
119635 GTCACCATT
1 GTCACCATT
119644 GTCACCATT
1 GTCACCATT
*
119653 GTCACCCTT
1 GTCACCATT
*
119662 GTCACCCTT
1 GTCACCATT
*
119671 GTCACCATC
1 GTCACCATT
*
119680 GTCACCATC
1 GTCACCATT
*
119689 GTCACCATG
1 GTCACCATT
119698 GTCACCA
1 GTCACCA
119705 GTCAAGTGAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.20, C:0.40, G:0.13, T:0.27
Consensus pattern (9 bp):
GTCACCATT
Left flanking sequence: Indices 119135 -- 119634
AAGCTAGCTCTCAGCTAGCTCAGCTATTGTATTTGTTTGAGTTATGGGTTTCTCGTTCAGCTCGG
ACGAGTGACGGGAACACCGCTGTATGCAACTATTCCCTGCATTCGTAGACCTTTGTACTAATCTC
CCCACGCCTTACACGTGGGTTGAAACAGGGTATAGGGGCCCTTGGAATCATCGAAGAATCACACG
GTAGACTACACTTTCTCCCAGAGCATATGTCAATTTTTCCAAAATATTCCCGAATTCTAAAGTCT
TGGCTACGGGCCACAACAACCGAACAACATTGTATATTTCAGTAGACTATCCTAATACAGTCTGT
TCACTCAAGCGAGGAGAGCAAGACCAGCGGCCACGGCAGCAGCAACACCGAATTGAGGAATGTTT
CCAGCATTGATCATAGGCGCGACGGTGGGGACACCCTCCTGCGCGGAGTTGTCACCTTTATCGTC
GCCATCGCCACCGTCGGTAGAAGCTTGAACGGCAGGGGCAGCGTC
Right flanking sequence: Indices 119705 -- 120204
GTCAAGTGAACTTCGTAGGTGGCATCATCACCATCCCCTTCCTCCTCCAGGTCTTGATACTGGTG
GGGCTTTCCCTGGCCAGGGGTGTAGTCTTCGTCACTGGTGCTAGCACCCACTTTGATTGCTTCGT
CAGGAGCCTGGCTGTTAACCAAGCTGCCGCTCTTGATAGTCCATGTACCCTCGCCTGGAGCGTCG
GAGTACAGGAGCTTGCCATCCTTTAAAGCGACGTACTTGTCAGCCTTCCAGTCAACTAACAGTCC
GTCCCCGTTGTTGTACAACTCGACTTTTTGGCCCTCCTTCTGCTTGATATCACCATCCAACTCGA
AGGGAAGGTTGTCAAGCTGGACCATGTGGACGCCGGCAGACACGGCTAGAGAAATAAAGGCAGCA
ATAGATAAAGTGAAACGCATGGTGTGTGAATACTGGCGGTTTAGGGACCCCCTCCACCCATTTAT
ATACCGTTACTTCCAACACCAATGAGGAAAACTGTGACCCCCCAC
Found at i:127554 original size:27 final size:27
Alignment explanation
Indices: 127510--127576 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
127500 TCCATTTGAT
* *
127510 GGATAGCCTTGCTGAGGTGCTTGGGGA
1 GGATACCCTTGCTGAGGTGCTTGAGGA
* * *
127537 GGGTACCCTTGTTGAGGTGTTTGAGGA
1 GGATACCCTTGCTGAGGTGCTTGAGGA
*
127564 GGATAGCCTTGCT
1 GGATACCCTTGCT
127577 TTTCAAGGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.15, C:0.15, G:0.40, T:0.30
Consensus pattern (27 bp):
GGATACCCTTGCTGAGGTGCTTGAGGA
Left flanking sequence: Indices 127010 -- 127509
ATTTGCGCTTGACGAGGTGGTATTTCTCCTTAGAGAACCCCACTCTTTTGTACGCAGGTTGCCCC
TGATGGTCCACGCCCACCAAAAATACCCCAACATTGGATTTCATCAAAGTGAAGCCCCGGGACAC
CATCAAAATCGGAATACCGTAGACATCAAAAAATTCAATGACGTAGGCCCGTCCGGTGTTACTCA
TCTGCCGCTGGAGCACTGCCTTCATGCTTCCAGAGTCCCTCTCTCGGATGTACCCCACGGTGTTG
CCCTGTTCGTTGGTGATCAGGTACTGGTTCAAACAGTCCCAGCCCAACCACTGGTTCAATGGCTC
GTTGTGGCGCTTGACGTGAAGGCGATTGCACCCAAACACCGACATAAATGCTGGGGTCAAGTCAG
CATTGGTGACTTTCTCGACCTCCTGGTACTCGGGAGGGTGATCCTTGAAATCAGCTTGGTAGTCC
TTACCGGTGATGGGGGGCGGGTTGGCGCCATACTGTCCATTTGAT
Right flanking sequence: Indices 127577 -- 128076
TTTCAAGGGGGTACCCGTTTGGGCCCGTAGGGGGCATTCCGGGATTACCCGCGTACAGGGGTGGG
CTCTGCTGGGTTTGCTGGTTCCAGTTGTTGTGTTTCTCGTCCATGATTTGATACGTGTAGGTACA
TCACTCAATTTATAGCATGGATAGAGTTTCGTATTCTGTCAAGAGCCGTGTGACAGGGCTGAATG
TGTGCATTATGCATAATGCATAGCCCCATCACATAACAAACACCCGTGCTATTGCGGCTGCTTCC
ATGCAGAAAGGCAATGACTTCTACATCAGCCACCCACACTTGTTACAAAGGACCAATCACCCCTT
CACGTAATTTGGTTCGTCCTCGTAAATGCTCCGTGGTTTACCCGAACACGACAGGCTGAGTCACG
ATCATGAACCGATAATCTTTAAGCCTCATAGAAGCCTCAGTGTAAGCCTCCCGTTTAGCCATGGG
ATCATACGGTATGGTCATCCGTTAGACCAAGCCTTGGGGCTAGAT
Found at i:141583 original size:14 final size:14
Alignment explanation
Indices: 141564--141590 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
141554 AATCACAGCA
141564 ACAGAAATAAATTG
1 ACAGAAATAAATTG
141578 ACAGAAATAAATT
1 ACAGAAATAAATT
141591 TTCAATTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.11, T:0.22
Consensus pattern (14 bp):
ACAGAAATAAATTG
Left flanking sequence: Indices 141064 -- 141563
ACGATGCACCCGACCGACTTGCAGTGGGACTCGCCGTAGGTGGTGACTTTGAAAAGGGTACCGTA
CGAAGACATGGTGTGTGGGTGGTTCCTGGGGACGAAAAAGAGTCATGGTGCGGCGGTAAGATTTT
TCATTGGTTGCGAGCGCGGGCGGGGGAAAGCATGGGGTTGTGGTGGGGAAATGGAGGTGGATGGG
TGTGGTTGCGGTTGGTTTTGGGTTTGGGAGATGGTTAGAGTTGAGCTGTGTTGCTTTCTTTTGTA
TACAGGGATCCCAAGCTGAGTTATCGTGACCCTTTCCTCGTAGTCTGGTGACTCATGCCGGTAAA
GGGCCGTTTTTACTGCACACAAGCTCGATAACAAAGTGGTGTGATCTGCCCACTGAGGTCAGTCG
TCCGAGCGGGAGCGGTGGTGGGAAGTGGAGATTGCACGTGTGCAAGGGCTTCCAGCAACCTGAAA
GCTAAATCAATAATTTTTCACCACCAAAAGAAATAAATCACAGCA
Right flanking sequence: Indices 141591 -- 142090
TTCAATTGTGCATGCGAATTTGCAGCCAAAAGCACATAGCAACACACCTACAATTTCGAAGCCTT
TTCTACAAAAAGTTTATTCAATCTTCTATTGTCATTATTATCATTATATACATTTAGCTTAGTCA
AGTTCAGCGGCGTCAAGGTCATCGTCGTCGTCCATGTCCCAGTCGTCGTCACCCATGGTGTCGTC
CTCCGGAGGCGCCTCGTGGTTGGGAAGCACCACAAGCCCCTTGTCGCCCAAGGTCACCTTGGTGG
TTTCCTTGTCCAAAATCTGGCCCTTGAGCAACAACACTGCCATCTTGTTCAAGATCTCGGTCTGG
ATCAACCGGTTAAGAGGACGCGCACCCAAGTCGGGCGAGTACCCGTACTTGATCAAGTAGTCCAA
TGCAGGCTCGTCGAGCTCCAAGTGGATGTTGCGCCCGTTGGACGCGAACCGCTGCTGGATCTCGC
GCAACCGGATGTGGACAATCTTGGCGATCGCCTTCTTCGAGAGAC
Found at i:145485 original size:43 final size:43
Alignment explanation
Indices: 145424--145508 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
145414 TCACTAGAAC
145424 CATGGCCTACTCCTGGCCTACACAGGGACTATTTATGACCTAA
1 CATGGCCTACTCCTGGCCTACACAGGGACTATTTATGACCTAA
* * *
145467 CATGGCCTACTCCTGGCCTACACTGGGCCTATTTATGGCCTA
1 CATGGCCTACTCCTGGCCTACACAGGGACTATTTATGACCTA
145509 CCACTCAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (43 bp):
CATGGCCTACTCCTGGCCTACACAGGGACTATTTATGACCTAA
Left flanking sequence: Indices 144924 -- 145423
CGTGCCTACCACGCGGCTGAAGCGAGGTACGTGTGGGGCGTTTGAGCGTATGAATAGTTGGTTTC
ACGAAGGGATCTACAGACATCTGGTGATCATCGTACCTCCCCTGGCCCAAATGACACGAGTCAAA
TGCACCACGGACAGGTCGAAACGCTAAAAGACACCAAAATAAGGTAGCTACTCCTACCACCGCCG
AGCCGTGGCTGCCGTGCCCACATTTTCCCGCCGCAACCAACCCACTACCGCCCAATCAGTTTGCA
ACCGTACACCTTATCATGCATAGAAACGACAATGCATTCAGGATACATCCGGCATTACCGAGCCC
GCAGGACACGTGACGCCAATGATAATTCACCAGATGGAGACAACGAGAGGAGAAACAGTCGCCAT
TGAGTGTTTAATCACATTAGCTGCTATTTGAAAAGTTGTTGCAGCCGTACATTTTCGCTGTTTGC
ACCCCTAGCGTGCTAAATCTCTCTTTTACTGCGTCTCACTAGAAC
Right flanking sequence: Indices 145509 -- 146008
CCACTCAAATCACCTCCACCTCTTCTCAAAATGTGTATACCCTACCTTCTAACGACCGTAAAAAA
ACTGATTTTGCTGCTGCTGCTGCTGCTGGAACCCCGTAGCCTGAGGGCCAAACCCTGCCATTGTG
TTCTGCGGCATCATCTGCTGCATGGGTTGACCGTACGTCTGCTGAGGGAACTGCTGGAACTGTTG
CTGCTGGGGCTGCTGGGTCTGTTGCTGAAATTGGGGCTGCTGCTGCTGTTGCTGCTGCTGTTGTT
GTTGTTGTTGTTGCAATTGGGCCATCGTGGGTTGTCCTGTAGCATTGTTAGCCAACCCAGCAGCA
AACTGAGGCTGCTGGGCCCCCGTGGGCTGGCTGTACATCGACATAATGTTTTGTTTGGTGGCCTG
CTGTTGCAAAAACTGCGGGGTTTGTTGCATGAGCTGCTGCTGGTGTTGCGGGTTCAGCGGGTCCA
AGTACTGCTGCCCGTTGGAGTCGATGTACGACACCTGGCCCGTCA
Found at i:145495 original size:22 final size:22
Alignment explanation
Indices: 145427--145497 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
145417 CTAGAACCAT
*
145427 GGCCTACTCCTGGCCTACACAG
1 GGCCTACTCCTGGCCTACACTG
* * ** *
145449 GGACTATTTATGACCTA-ACAT-
1 GGCCTACTCCTGGCCTACAC-TG
145470 GGCCTACTCCTGGCCTACACTG
1 GGCCTACTCCTGGCCTACACTG
145492 GGCCTA
1 GGCCTA
145498 TTTATGGCCT
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
21 15 0.43
22 20 0.57
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.24
Consensus pattern (22 bp):
GGCCTACTCCTGGCCTACACTG
Left flanking sequence: Indices 144927 -- 145426
GCCTACCACGCGGCTGAAGCGAGGTACGTGTGGGGCGTTTGAGCGTATGAATAGTTGGTTTCACG
AAGGGATCTACAGACATCTGGTGATCATCGTACCTCCCCTGGCCCAAATGACACGAGTCAAATGC
ACCACGGACAGGTCGAAACGCTAAAAGACACCAAAATAAGGTAGCTACTCCTACCACCGCCGAGC
CGTGGCTGCCGTGCCCACATTTTCCCGCCGCAACCAACCCACTACCGCCCAATCAGTTTGCAACC
GTACACCTTATCATGCATAGAAACGACAATGCATTCAGGATACATCCGGCATTACCGAGCCCGCA
GGACACGTGACGCCAATGATAATTCACCAGATGGAGACAACGAGAGGAGAAACAGTCGCCATTGA
GTGTTTAATCACATTAGCTGCTATTTGAAAAGTTGTTGCAGCCGTACATTTTCGCTGTTTGCACC
CCTAGCGTGCTAAATCTCTCTTTTACTGCGTCTCACTAGAACCAT
Right flanking sequence: Indices 145498 -- 145997
TTTATGGCCTACCACTCAAATCACCTCCACCTCTTCTCAAAATGTGTATACCCTACCTTCTAACG
ACCGTAAAAAAACTGATTTTGCTGCTGCTGCTGCTGCTGGAACCCCGTAGCCTGAGGGCCAAACC
CTGCCATTGTGTTCTGCGGCATCATCTGCTGCATGGGTTGACCGTACGTCTGCTGAGGGAACTGC
TGGAACTGTTGCTGCTGGGGCTGCTGGGTCTGTTGCTGAAATTGGGGCTGCTGCTGCTGTTGCTG
CTGCTGTTGTTGTTGTTGTTGTTGCAATTGGGCCATCGTGGGTTGTCCTGTAGCATTGTTAGCCA
ACCCAGCAGCAAACTGAGGCTGCTGGGCCCCCGTGGGCTGGCTGTACATCGACATAATGTTTTGT
TTGGTGGCCTGCTGTTGCAAAAACTGCGGGGTTTGTTGCATGAGCTGCTGCTGGTGTTGCGGGTT
CAGCGGGTCCAAGTACTGCTGCCCGTTGGAGTCGATGTACGACAC
Found at i:145505 original size:22 final size:22
Alignment explanation
Indices: 145437--145509 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
145427 GGCCTACTCC
* *
145437 TGGCCTACACAGGGACTATTTA
1 TGGCCTACACTGGGCCTATTTA
* * **
145459 TGACCTA-ACAT-GGCCTACTCC
1 TGGCCTACAC-TGGGCCTATTTA
145480 TGGCCTACACTGGGCCTATTTA
1 TGGCCTACACTGGGCCTATTTA
145502 TGGCCTAC
1 TGGCCTAC
145510 CACTCAAATC
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
21 15 0.39
22 23 0.61
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (22 bp):
TGGCCTACACTGGGCCTATTTA
Left flanking sequence: Indices 144937 -- 145436
CGGCTGAAGCGAGGTACGTGTGGGGCGTTTGAGCGTATGAATAGTTGGTTTCACGAAGGGATCTA
CAGACATCTGGTGATCATCGTACCTCCCCTGGCCCAAATGACACGAGTCAAATGCACCACGGACA
GGTCGAAACGCTAAAAGACACCAAAATAAGGTAGCTACTCCTACCACCGCCGAGCCGTGGCTGCC
GTGCCCACATTTTCCCGCCGCAACCAACCCACTACCGCCCAATCAGTTTGCAACCGTACACCTTA
TCATGCATAGAAACGACAATGCATTCAGGATACATCCGGCATTACCGAGCCCGCAGGACACGTGA
CGCCAATGATAATTCACCAGATGGAGACAACGAGAGGAGAAACAGTCGCCATTGAGTGTTTAATC
ACATTAGCTGCTATTTGAAAAGTTGTTGCAGCCGTACATTTTCGCTGTTTGCACCCCTAGCGTGC
TAAATCTCTCTTTTACTGCGTCTCACTAGAACCATGGCCTACTCC
Right flanking sequence: Indices 145510 -- 146009
CACTCAAATCACCTCCACCTCTTCTCAAAATGTGTATACCCTACCTTCTAACGACCGTAAAAAAA
CTGATTTTGCTGCTGCTGCTGCTGCTGGAACCCCGTAGCCTGAGGGCCAAACCCTGCCATTGTGT
TCTGCGGCATCATCTGCTGCATGGGTTGACCGTACGTCTGCTGAGGGAACTGCTGGAACTGTTGC
TGCTGGGGCTGCTGGGTCTGTTGCTGAAATTGGGGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTG
TTGTTGTTGTTGCAATTGGGCCATCGTGGGTTGTCCTGTAGCATTGTTAGCCAACCCAGCAGCAA
ACTGAGGCTGCTGGGCCCCCGTGGGCTGGCTGTACATCGACATAATGTTTTGTTTGGTGGCCTGC
TGTTGCAAAAACTGCGGGGTTTGTTGCATGAGCTGCTGCTGGTGTTGCGGGTTCAGCGGGTCCAA
GTACTGCTGCCCGTTGGAGTCGATGTACGACACCTGGCCCGTCAC
Found at i:145756 original size:12 final size:12
Alignment explanation
Indices: 145741--145766 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
145731 AAATTGGGGC
145741 TGCTGCTGCTGT
1 TGCTGCTGCTGT
145753 TGCTGCTGCTGT
1 TGCTGCTGCTGT
145765 TG
1 TG
145767 TTGTTGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.35, T:0.42
Consensus pattern (12 bp):
TGCTGCTGCTGT
Left flanking sequence: Indices 145241 -- 145740
CCGAGCCCGCAGGACACGTGACGCCAATGATAATTCACCAGATGGAGACAACGAGAGGAGAAACA
GTCGCCATTGAGTGTTTAATCACATTAGCTGCTATTTGAAAAGTTGTTGCAGCCGTACATTTTCG
CTGTTTGCACCCCTAGCGTGCTAAATCTCTCTTTTACTGCGTCTCACTAGAACCATGGCCTACTC
CTGGCCTACACAGGGACTATTTATGACCTAACATGGCCTACTCCTGGCCTACACTGGGCCTATTT
ATGGCCTACCACTCAAATCACCTCCACCTCTTCTCAAAATGTGTATACCCTACCTTCTAACGACC
GTAAAAAAACTGATTTTGCTGCTGCTGCTGCTGCTGGAACCCCGTAGCCTGAGGGCCAAACCCTG
CCATTGTGTTCTGCGGCATCATCTGCTGCATGGGTTGACCGTACGTCTGCTGAGGGAACTGCTGG
AACTGTTGCTGCTGGGGCTGCTGGGTCTGTTGCTGAAATTGGGGC
Right flanking sequence: Indices 145767 -- 146266
TTGTTGTTGTTGTTGCAATTGGGCCATCGTGGGTTGTCCTGTAGCATTGTTAGCCAACCCAGCAG
CAAACTGAGGCTGCTGGGCCCCCGTGGGCTGGCTGTACATCGACATAATGTTTTGTTTGGTGGCC
TGCTGTTGCAAAAACTGCGGGGTTTGTTGCATGAGCTGCTGCTGGTGTTGCGGGTTCAGCGGGTC
CAAGTACTGCTGCCCGTTGGAGTCGATGTACGACACCTGGCCCGTCACAGGGTCGGTGTACTGGT
AGATTTGGGGCTGGCCCGACACCATTCCTGGAAGCCCCGTGGGCGTCAGCGCCACCGGAGGCGTG
CCAGCGGTGTTCCACCACTCGTCGCTACCCTGAGGAGCTGACTGCGCACTGGGAGCGGGCAGGGC
TCCCGTGGCCTGGCCCGCCAACCCAGGGCGTCTCCGGGGAAGCGCGGGCGCAATCTCATCCTGGT
TGGGATTCACTTTCAGGTCCTGCTGCAAGATCTCCAACGCCTCGT
Found at i:152009 original size:24 final size:24
Alignment explanation
Indices: 151971--152033 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
151961 TCTTTGTGAG
* * *
151971 TGCTGGGCCCGTGGGAGTGAGTGC
1 TGCTGGCCCCGTGGGAGTAAGGGC
* *
151995 TGCTGGCCCCTTGGGGGTAAGGGC
1 TGCTGGCCCCGTGGGAGTAAGGGC
* *
152019 TGCGGGCCCGGTGGG
1 TGCTGGCCCCGTGGG
152034 GGTGGCTGAC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.06, C:0.24, G:0.51, T:0.19
Consensus pattern (24 bp):
TGCTGGCCCCGTGGGAGTAAGGGC
Left flanking sequence: Indices 151471 -- 151970
GATTGGCTACGACCTCTCCTTGTTTTCTACATTATTTTTTTTTCCCACACGCTTCACGGGGTCTC
TATGACCACTACTTGCAAAATGGTTATGCCGACAGCCCTGACGCACTGATCTGACTTTTCATCGG
GTTTCGTTCAAGGGCCTAAGCACCCCAGAGATCATTTATAGTGTTTCCCAGGTGTAGCAACCCGT
AAAGCTTGGACGGCGTAATCTACAACTTCCCTCGGCGTTTGTGCCAGGTGACATCGATCGTGGCC
CCTGCTATCTATTGTATGCTATTACTGTCCCCGAGACTCTTCCGGGGTGCTCGTTTTTGCCCGCT
TTGAAGTCTCGGACGGAGGTGCTGGTCGCTTCCGTTTCATAAACACCGATGAGGCTGCTGCCACC
AGGGCCGCGGAGGGGGCTGGTTTCGGCAGTGGCGATGCCTTTGCCGAAGTCGCCGCGGCGGCGGC
CATTGCCAGGAGCTTCGTCAGCGACCCGTTTGGGGTCTTTGTGAG
Right flanking sequence: Indices 152034 -- 152533
GGTGGCTGACGTTCCGCGCGGCATCCGTGGTACCTCCATCGCCGGTCGTGTCGGATTGAGGGGTT
TGTACGAGGTGACTGCCGGCCCGCTAGGAGCCGCGCTGGTTGACGACGGGCCCGATGGCACTCCC
ACGGGGTTAAATTTGGGCCGTCCGTTGGTGCCTCGACCCATACGCTTGAACCGCTCCTTGTCGAT
CTCGTGACACTCCTCAAACTTGGGTAACTCGTGAGGATCTAGCAAGCCCTCAGCAAAGAACGGGT
CGCGCATTGCATCTGCCGCGTTCGCTCGTTTGTAAGGGTCTAATGTGAGCATCCGTGCAAGCAAT
GCCACGGCTTCCGGAGGCATCAACTCCGAAAACCTTGTCTCCAAACTGCGTTTTGCCGTGAGCCC
TAGGTTGTAGTCGGTTTTGTTGGGCAACAGCATCGCTGCTGGCCACTCTAATGGCAGTCCGCACA
ATTGAAACACCAATTGCGCTTGGTGGGCATCAGTCTTCCCCACCA
Found at i:168705 original size:10 final size:10
Alignment explanation
Indices: 168690--168719 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
168680 TGCTAGACAG
168690 AGCCATTGGA
1 AGCCATTGGA
168700 AGCCATTGGA
1 AGCCATTGGA
168710 AGCCATTGGA
1 AGCCATTGGA
168720 TGGGATGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (10 bp):
AGCCATTGGA
Left flanking sequence: Indices 168190 -- 168689
CAAAGTCATATTAGTGGCCACTGAACCCGCAGGTGTTGCCGTTCTACTGAACATACTGGTGCCGT
CAAACCCCTAGTGCTAGTGTTTGCTTCATGAGTCTACCCTCGAGTCTTGCCATCCAAATAGACAA
CGAACAGCAGGCGCTGGAGTTTGTTCGAATGCACCCCCTGGGGGTGTTTGTGGAGGAAAATGGTC
ACACCTACGGGGTGGCCGAGCCCGCCAAATTGATGGAGTTCAACAACCAGAGGGGTGTGCACGAC
GACACCCTTCACCAGATCATGGTGAAACAAAAGGAAGTGGTGGACCACTTGATGCGGTAGGGGAC
ATGCACCTGGGCGCCACAGCCCGGATGCTCTTGCACGACTGTAGAATGGACTGAACGACCACTGG
CTGGTCAGAGATAGAATGCTTAGGCACACTGCACGTATTAATTGCACAATACACGAAGAATTTGA
GGGGACGATGAGGAGAAGGGAGAAACAGGGCGAAGTGCTAGACAG
Right flanking sequence: Indices 168720 -- 169219
TGGGATGGAAAGGGAAGAAAGGGTGTCTGAACGTGCTGGAATGCCTCTCATTGGTGTCAGTTCGG
GGTTAGTTCAGACCTTGAGTACTCATCGAGCTAGGATTCTACTCTAAATCCATCGGATTTATACG
CCCCATCGGTAGTATCACACGTATAGGATTACAGCGACGCAATCCATTGAGAACACCAAAACTAT
GGCTCTTACAGCGAGTGGATTCAACTCTAAAATCCATCGGATTTATAAGCCCCATAGTTGTAATA
CACGTATAGGAAAATTGTCATAGTCTATTGAGAGCACCAAAAACCATGGCTTAGCCCTAGACTAC
CATAGCCTAGACTCTCATATCTCAAGACCATCGTAGCAGACCATCAAATCCCAACACCATCCCAT
CAAAGCCAACCCTCCATCTGAGACCATCTCTACACCTTGATTTCCCCCACCGCCCAGCCCTTACA
TGACATAAATTACTACTATATCCCCCCCAACCCATTGCGCAAGTT
Found at i:174260 original size:15 final size:15
Alignment explanation
Indices: 174240--174270 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
174230 GTTTTTCGGG
174240 GGTGGCAGTGCCTAT
1 GGTGGCAGTGCCTAT
*
174255 GGTGGCCGTGCCTAT
1 GGTGGCAGTGCCTAT
174270 G
1 G
174271 CTGTATTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.23, G:0.42, T:0.26
Consensus pattern (15 bp):
GGTGGCAGTGCCTAT
Left flanking sequence: Indices 173740 -- 174239
GGGCTGCGCGTGCTGCCCGAGCCAGCCGTGCGCTGGAATTGGGCACGGCCGTGGCCCCCGTTGCT
GAGTCCGACTTCCGGGATTTGACGGAGCGGGTCACCGTATACCGCGATTTGTTGCTGGAAATCTC
CAAGTACCGTCGGTTCACCATCCCCTACCAGCTGGCGTGGCGCAAGCACCACTTCTTCTCGTCGA
TAGCCATTGTGGCTGCCCTCCATTTGGTGGTGGTGTTTTCGCTGGTGTGCATGGACCCGGTGTCT
GCCGGGGTGATCATGTTCATTTCGTGTGCCGTGGGCATTCTGGGGGTGATCAACGGGCTCATTTG
GGGCCTCGGAGTGCGGGCCGAGCTGCGGGCGTTGCAGGAGGTCCAGCAGCAGGTGAAGGACAAGG
TGGACGCGATCAAGAACGAACTCAACGAACTCATTGACATGCCAGCGGTCGAGGACGACCTTTAA
TACCATAGAATAGATTAGACTTAGTTAATAGGAAGGTTTTTCGGG
Right flanking sequence: Indices 174271 -- 174770
CTGTATTGTACTAAAAATGCTAACTGGGTTTCCAATTGGGTCTCAAACAGAGCTCTCGGGCTCAG
GCAAATAACGGTTTCGACATCACCGCGCCCAACCACGGGCCTCGGTTGACCACCTCTACCGCACT
GGGCACCTCGTGCTCAACGTTGGGCCGGGCCAGGATCGAGGACACATAGGTGCTGAACAAGATGG
CGTGGCCCATCAACGCGGTGCTGAACTTGTCCGCGTCCTCGGGCTGGATGCGAATGACCGCCTCC
AACCCCTGGCGGTGCAACACGTCGAAGTGGCTGGCGCTGCCCACGAGGCCGTACATGTTGGACAC
GGCAGCCATCACCAACGTCTTCCACGAAATGAGGTCGATCTCCTCGTTGTCGACGTTCTTGCCGT
CCAACGCGGTGCTGGGAACCACCTTAAGATGGAGATAATACCATGTGGGCTCTATCCCCGTCATT
GGGAGGAAGCGATGGGGTGTCTTGGTTATGATGCACTGGTCACTT
Found at i:175303 original size:10 final size:10
Alignment explanation
Indices: 175288--175315 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
175278 CAATTCCGGC
175288 AACCTTCTAG
1 AACCTTCTAG
175298 AACCTTCTAG
1 AACCTTCTAG
175308 AACCTTCT
1 AACCTTCT
175316 CCATGGTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (10 bp):
AACCTTCTAG
Left flanking sequence: Indices 174788 -- 175287
AAACGAATATTGAAAAACGCGGTTTGGGCCTAGTGAGCACTACGCGTGGAGTTGAGAGAAGCAGA
TTTGGGGGCTTTACAGAGAGCTAGGGTGGACAGAATGCAAAAAAAGAACGCCCGGCGGGATTCGA
ACCCGCGATCTTCACCGTAATCCAATTGTAACCGGAAAGTGACGCCTTGCCATTGGGCCACGGGC
GCAGTTATTAGACCGAGTGAGTGGTGGTCGGTGGTGTGGTGGTGGAGAGAGGGAGCCATTTGCTA
GCCAGCAATTGGGATCTACAGCGGGCTGTGCACCTAGGAACATAGATGTGACATGCAAGAAGCTG
CAGGTTGTGGAATTGAGTGCAGATTTTCATATGGAGGGTGGTTGTAGCGAGATTTGGGCCGATCA
AGATCGGGAGTAAACGGCCACAAAGCACGAAACCGTTGACACTACAAGGCTCATACCACATCAGT
AGGTGGCATACCACCCGCAAACATCTCCTAGCCACCAATTCCGGC
Right flanking sequence: Indices 175316 -- 175815
CCATGGTACGCGATACTTCGAGAAACCCCCAGAAGGTTCGAGAAGGCTGCCACAGCCACGCCAAG
ACTGGTATAAATACAGAGGGAGTCAATCACTAGTCCTTCACTTTTTACAACAAACACATAATGAC
AAGAGCTATCGGTATTGACTTGGGAACCACCTATTCCTGTGTGGCCCAGTTCCAAAACGACAGAT
GTGACATTATTGCTAACGACCAGGGTAACCGAACCACCCCGTCGTTTGTGGCATTCACCGACACT
GAACGTTTGATTGGTGATGCTGCCAAGAACCAGGCGGCGATGAACCCCGCCAACACCGTTTTTGA
CGCCAAGCGGTTGATTGGTCGCAAATTCAACGACCCTGAGGTCCAGGAGGACATGAAGCATTTCC
CCTTCAAGGTGGTTGACAAGGCCGGCAAGCCGGTGATCCAGGTGGAATTCAAAGGTGAGAACAAG
ACTTTCTCTCCCGAGGAGATTTCCCTGATGGTGCTTACAAAGATG
Found at i:178568 original size:9 final size:9
Alignment explanation
Indices: 178538--178582 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
178528 CGGAGGCTGG
*
178538 GGAGGGCCC
1 GGAGGACCC
* *
178547 GGTGGACCT
1 GGAGGACCC
178556 GGAGGACCC
1 GGAGGACCC
178565 GGAGGACCC
1 GGAGGACCC
178574 GGAGGACCC
1 GGAGGACCC
178583 TGGGGGTAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.18, C:0.31, G:0.47, T:0.04
Consensus pattern (9 bp):
GGAGGACCC
Left flanking sequence: Indices 178038 -- 178537
CAAGCTTAGCGATGGAGTCCATCAACAGTTTGGCGTCGCCCGAAGGGGCCGAGTTTGAGCTACCC
AGCTCAGCAGACTCTTGGGCCGGTGGCTGCTGGGCTTGCTGCTGGTACTGGTTCGAGTACTGCTC
GTACTTCAGCGATCCCAGGAGCGACTGCGACCCGGGAGCACCGTAGGACAGGTAGTTGTCATATT
TGGCGTGCTTGCGCCCACCACGCCGGTGGCCTCCACGGCTCTTGGGCGGCTGGTGGCCAGCTATG
CCCACGTTGTACGGCGTGGGCCCGTTACCCCGTTCGCCACGATCGCGGTCGCCGCGGTCCTGGTA
CCGGTTGTAGCCCTTGTTGTCGTTACGGGCCTCCGAGTACCGGTTGCCACTCCAGGGAGCACCCG
TGGGTGGAGAAGGCACAAACGGCTGGGGTCCCGGGCCCTGCGGTGGCAGAGGCTCAAACGGAGGG
TACTGTTGGGGAGGGTAGTTGTTGTAGCCACCGTACGGAGGCTGG
Right flanking sequence: Indices 178583 -- 179082
TGGGGGTAGCCCATGGGCATAGGCGGCGGGCCACCCGAGTACGGCGGCACTGGAGGCGGGGTCCC
GTTGCCGTAGGGAGCCATCGGAGGCGGTGTGGCCCCGTAGGGAGACATAGGGGGTGGAGTAGCTC
CGTAGGGCGGCTGGAACCCAGGCGGAGGCGGCCCGTAGGGAGCAAACTGGGGAGGCTGGGGCTGG
AAACCGCCGTAAGCCTGGCCTGGAGGAGGCCCAGAAGGCGCCTGGCTGGGCTTGGGCTCGGGCAG
CGCGGGCGCAACCGAGCCACCGCGCTTTTGGCGAGCCGTCTGGAGCAAGTTGGCGGCCTCATCGG
GGTCGATGGCCGCGTACTCGTCAAACTTGACTCCACCGTCAGCGTCAGCCTCAAACGTTTGCAAG
TCTACGTTGTGCTCGTTGATAATGCAGCACCCAAGCACCCCCAGGTAGGCGGCATCGGCCACCGC
ATCGGAGAGCGCCCGGTGGGTCACGTCCTCGGTGTCCGCCACCAA
Found at i:180235 original size:12 final size:12
Alignment explanation
Indices: 180218--180252 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
180208 AGCAGACACC
180218 GCTGGCGACGCT
1 GCTGGCGACGCT
180230 GCTGGCGACGCT
1 GCTGGCGACGCT
* *
180242 ACGGGCGACGC
1 GCTGGCGACGC
180253 GGCCGCTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.11, C:0.34, G:0.43, T:0.11
Consensus pattern (12 bp):
GCTGGCGACGCT
Left flanking sequence: Indices 179718 -- 180217
GCTGGCGGAACCGGCCGACAATGGCGTCCATCTGCTGGCGCTGGGGCAAGTCCGAGAACTCGGGC
AGCGCCAACTCGGCCACCACGTTGTCGTAGATCGCCCGGAGCGGGTGGGCGGCAAACGCCGCGTC
CATGTCGAACAGGGGCTGTTGAGGCGTGGGCGTGGGCAGTTTCGCCGCCACCGGTGGCTTGGGTG
GGAGCCGGGCCAGCGCTGGAGGCTCGGGGAACGGCACAAAGTCCGGCAACTGCTCCCACCGGTCG
GGCTGGGCGTCGTGCGGGGTGTCTGGAAGCGTCAGCGAGCCCATTTCCGGGCGCGCAGGCATACT
ACTGCTGCCAGCGGAGCCCGTGGTGGGTGCTACCGCGGTTGGTTCGCCCGCTGACGGCTCCTCGA
GGCCCTCGGGCTCGTAGGCATCGTCGTCGCTGGCGTCGAAATCGTAGGTGTTGGCCGCAGAGCCA
GCGTCACCCTTGGGCGAGGCGGCTGGCGACGCAGCAGCAGACACC
Right flanking sequence: Indices 180253 -- 180752
GGCCGCTGAGGGGACCGATGCCTGCTCGGAGGCTTCCGGAGCCAATTGGGCGTCACGGGGCTCTT
CTACGGGCACCACGGGGCTGGGCACGTGCGGGGTGCCACTGGTATCGGTGTCAACTAGCGGGGTG
GCGGCTGAGACGCCGTCTGGGCTGTCCGCGGGGGTGCCCGTGCTGTCCGGAGGGGTGGATACCCG
GGGCTCGGGGGCTGGAGAGTTGTCCATCCGGCTAGCTAAGTGTCTGGAGCAAGAGGAGGCGGAAT
GGGTGGCCAGTGGTGCCTGCGTAGAGGATAGAATAGAGTTCCTGGGCGCCTGTGGTTGGCCAACG
GTTGATGATGGGAGACATCGTAGCGCGAGAAAAAGACGGAGCAGGTGTCCTGCACACGGCGATGA
CAGGTGGACGGAGAGATAAGCAGGTGGGGCACGAGCGGGAGGGGTAGGGTGCCTGGGGCTGGGTG
TGGTGGGAGGGGTGGTTAGGAAGGTGGTGGTGGTGGTGGGTGTGG
Found at i:180941 original size:12 final size:13
Alignment explanation
Indices: 180898--180938 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
180888 TGTCGGAATA
*
180898 GGGTGTAGATATG
1 GGGTGTAGAGATG
*
180911 GGGTGTAGAGGTG
1 GGGTGTAGAGATG
180924 GGGTGTAGAGATG
1 GGGTGTAGAGATG
180937 GG
1 GG
180939 TGTGCTGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.56, T:0.24
Consensus pattern (13 bp):
GGGTGTAGAGATG
Left flanking sequence: Indices 180398 -- 180897
TCTGGGCTGTCCGCGGGGGTGCCCGTGCTGTCCGGAGGGGTGGATACCCGGGGCTCGGGGGCTGG
AGAGTTGTCCATCCGGCTAGCTAAGTGTCTGGAGCAAGAGGAGGCGGAATGGGTGGCCAGTGGTG
CCTGCGTAGAGGATAGAATAGAGTTCCTGGGCGCCTGTGGTTGGCCAACGGTTGATGATGGGAGA
CATCGTAGCGCGAGAAAAAGACGGAGCAGGTGTCCTGCACACGGCGATGACAGGTGGACGGAGAG
ATAAGCAGGTGGGGCACGAGCGGGAGGGGTAGGGTGCCTGGGGCTGGGTGTGGTGGGAGGGGTGG
TTAGGAAGGTGGTGGTGGTGGTGGGTGTGGCAAATTGGGTTGGTCGAGCGGTTTGTGACCGGTCT
GTGGCTGGTGTCGGCGAAAATGGCATAAAGTGTCGGAAGAGGGGTGTGGGAATGTGAATGATGGT
GGGGTAGAGGCAATAGGTAGGGGGTGTAGGTGAGGTGTCGGAATA
Right flanking sequence: Indices 180939 -- 181438
TGTGCTGTTAGTTTCGTGTGCTGACGTTGGTTTTGTGTCTGGAATTAGGCTGCATCGACGAAGAT
GTCCACGAATCGCTCAAGCAGCGCGTACCGCAGTACGGACACTTCTAGCATACCGACTACTGAAA
CTGCTCACGCCAGTGTCTGGGGGTGCTTGATGCTACTTGCAACATGACTGGTCACGTGCCGGGTG
TGACTGACGACGCCCACTCCGTATTCTGGGGGGTTGCCTCTACCCTAGCAATTGGTGGAATTCTT
TGTATTGTCTCGTCCGCTCTACCACCTTCCAACGTAACTGTGGCTATAAACCTTTCTGAGTTCTA
TTGGTGAACCGATTTTCACCAATTACCTACCGTAGACAACCCATGCACACCAACCGAAACACCCA
TACACACCAAAACGGCCCAAACCAATCCCAAACCCATCCCAAACCCCCACCCTCCTCTTCCGCCC
ACCCTTTCCACCAGCTTCTCCCGCTCTTGCCACCGGGATTCCACT
Found at i:181374 original size:11 final size:11
Alignment explanation
Indices: 181344--181374 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
181334 ACCAAAACGG
*
181344 CCCAAACCAAT
1 CCCAAACCCAT
181355 CCCAAACCCAT
1 CCCAAACCCAT
181366 CCCAAACCC
1 CCCAAACCC
181375 CCACCCTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.39, C:0.55, G:0.00, T:0.06
Consensus pattern (11 bp):
CCCAAACCCAT
Left flanking sequence: Indices 180844 -- 181343
AATGATGGTGGGGTAGAGGCAATAGGTAGGGGGTGTAGGTGAGGTGTCGGAATAGGGTGTAGATA
TGGGGTGTAGAGGTGGGGTGTAGAGATGGGTGTGCTGTTAGTTTCGTGTGCTGACGTTGGTTTTG
TGTCTGGAATTAGGCTGCATCGACGAAGATGTCCACGAATCGCTCAAGCAGCGCGTACCGCAGTA
CGGACACTTCTAGCATACCGACTACTGAAACTGCTCACGCCAGTGTCTGGGGGTGCTTGATGCTA
CTTGCAACATGACTGGTCACGTGCCGGGTGTGACTGACGACGCCCACTCCGTATTCTGGGGGGTT
GCCTCTACCCTAGCAATTGGTGGAATTCTTTGTATTGTCTCGTCCGCTCTACCACCTTCCAACGT
AACTGTGGCTATAAACCTTTCTGAGTTCTATTGGTGAACCGATTTTCACCAATTACCTACCGTAG
ACAACCCATGCACACCAACCGAAACACCCATACACACCAAAACGG
Right flanking sequence: Indices 181375 -- 181874
CCACCCTCCTCTTCCGCCCACCCTTTCCACCAGCTTCTCCCGCTCTTGCCACCGGGATTCCACTG
CAGCAAGAGTGCATATGCGCATACCCGATCAATCCAGTCGCCACCAACCCCCATCCCAACCCGCG
TATCCCTCGAGCGCTTTTCCCCACTTATAGCGCCTTCTATCCCCTAGCGCCTTCCCCCAGCATTT
GCATTTCGCCGATTGGCGCCGGCCACCATGGATAGACAGACGTTCTTCTTCCTCTTGATCATCAT
GATCTTCTTGTGGTTTCCCCTGGACAACGAGCAGGCCCACAACAGCAGCGAGCAGCGGGCGCTCG
ACCTCTTCCACAACCACACCCGCACGCTGTACCAGGAGTTGGTCAACACGCCCCCGTGGGCCGGA
TACGGGAACATAACGGGGTTCCAGTTATCGTACCAGGACCACCTAGACGGACACAACGCGTCGCA
GTGGCCGCTCCACAAGTACTCCGAAAAGCACCCGTTCCAGCACAA
Found at i:184212 original size:23 final size:24
Alignment explanation
Indices: 184185--184239 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
184175 AGGATCGATT
*
184185 AGCCTCGATTACAGCCTCGA-TAC
1 AGCCTCGATCACAGCCTCGAGTAC
* * *
184208 AGCCTTGATCATAGCCTTGAGTAC
1 AGCCTCGATCACAGCCTCGAGTAC
*
184232 AACCTCGA
1 AGCCTCGA
184240 ACAATAAGAC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (24 bp):
AGCCTCGATCACAGCCTCGAGTAC
Left flanking sequence: Indices 183685 -- 184184
GAGAACGGGTTCCTGCTGGAGGTGTTGGAGGGGATCAAGCTTGGGGCCGACGAGCCCGCCAAGGC
AGGCATCACCAACTGTGTGTGCACGTGTCCCATCTGTATGACCACGTTGACGTTGCCCATTGTCG
CCGAGGCCCTGAAGGCGCTGGCGGTGTCGCGCAAGGAGTACATGATCACTCCGTGCCACCACATT
TTCCACGCCGAGTGTCTTGAGTCGTGGATGAAGTACAAGCTTCAGTGTCCCGTGTGTCGCCAGGC
ATTGCCTCCGATCTAACTATGTAATGAATAATGAATAGAATCAGGGTATGAACTATTAGCTCAGC
GTAGGTCCGATAGAATTTACGCTGAAAACTTGATTCTTGAGAGGCTATTGTACAAGTGACAGGCC
GTTATTATATGCATCGAATACCCACCCACTCAGGCACGAATTAAAATCAAGATCAAGCCGGGTCG
AGCTGCCGTAAGGCTCTGAAAGTTACTACAAACCGAGGATCGATT
Right flanking sequence: Indices 184240 -- 184739
ACAATAAGACCTGCGTAAACTATTCTTCCACCTCTCTCCTCAGACCACACCTCCCAACCATCGGG
GCTGAGACTCATCGCCATATCGTATCGTACGTCTGTCTGCTGCGGGCATTGTCCTCATTTTCGCT
TGCTTCTCCCGTCGCCGGTGGCCATTGTTGCGGGGATACCTGCAGCACCGAGGCACAAAAGGAAG
GTCAACCCGGATCTCCGGAAACACGCCGAAACCCACCAAGTTTCGCCCAAAGATACGCCCAAAAA
TACCACCAGGTCTTCTGACAGGACCCCACACTGCGCACCCGCTCGCCCCGGTGACAGGTGTCAGC
ACACCCTTAATTAGCCGCGTCGGCTCGGCTATCGCGTAGTCATGTACCTCTGCGGTGGTCGGATG
CCTCACGTGCAAATGAGGCCACACTAACCTCACACCCTAACTAACCACTTTAGACCCGCTAGAAC
CGCCCCGGTCGATCGCCAGCTCGCGGCGGCTATCGATCGTGTCGG
Found at i:185758 original size:18 final size:18
Alignment explanation
Indices: 185737--185797 Score: 86
Period size: 18 Copynumber: 3.3 Consensus size: 18
185727 CACCCACACA
185737 CACCCATACCGCTAATAC
1 CACCCATACCGCTAATAC
185755 CACCCATACCGCTAATAC
1 CACCCATACCGCTAATAC
* * *
185773 CACCCACACTGCTAACCAC
1 CACCCATACCGCTAA-TAC
185792 CACCCA
1 CACCCA
185798 CCATGAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
18 31 0.79
19 8 0.21
ACGTcount: A:0.33, C:0.49, G:0.05, T:0.13
Consensus pattern (18 bp):
CACCCATACCGCTAATAC
Left flanking sequence: Indices 185237 -- 185736
TAAGTAGCTGTAACACCATTCGTGACCCCTGCCGGTATTTGAGTTCTGTGTTGTTTGTGCTGACC
GGCTCCACTTCCCCAACGCAGTCCCCGCCCCTCTGTTTGCCCCTGCGCCTTGAAAGCCTCGTTTT
GACAAGCAATTAGACGTGGCTCTACCGGGGTTTGTGACTAGACACGAGACCAGACGACACTTCGC
CCGACACCTGGACGCTGTTTGTTCCCTGCTGTGCTGTGCCTCCCCCCATTGATTGTTGCGTACCC
ACCGTGAGCAGCAACCCGGAGATAACAGACGCGACCGTCGGTACCGATTCTTGATAGCCGAGGGT
ACTGGTTGCTCAACCGTGCTACACAAACGAGACACTGGAGACCGCTATCCGCTGGACTCCACTGC
ATCCGCAAACCCACACCACTAGCTGAACAACCTACAACCAGTGCACCACACCACCCAACCACTCG
GAATAACCCGTGCCTACCCAATCCCACAACCCACACACCCACACA
Right flanking sequence: Indices 185798 -- 186297
CCATGAGTTTCATGATCGTGCCCCCCGTGAGCTACCAAACCAAAAAGAAGCTCCAGGCACAGGAG
GAAAAGAAAAAGGCCCACAAGAAAAAGAAGTCGCTGTGGCTGGGCCTGGGCCTGGGCCTGCTGGC
AGCACTGATCGCCCCCAGCACCTTTCTGGCCGAGTCCCACGACCTGATCCGCTCCGACCGCTCGT
CGCGGTCCGACGCCACCGTGCCCCAGCTGGTGGGCTCGATGCTGCTGGCAGCGTCACACGAGCGT
GGACGGGCCAACCTGATGGCCCTGGACGTCCGTAGCGAAGTGCGGCTGATGCTCAGCGGCGTCGA
CGAGTCCAGTGACGTGGGCAGCACCTCGCTGCGCAAGAAACTGAAGCTGAGGCTCAAAAAGATCT
TCTCGAGGAAGAGCGACGACTTTCTGGCATCGCTGGCCACCCTCGCAGATGAGGCGAGCAGCCGC
AAGAGCAGCGACAGCCGCCGAGACAGCGCGCCCGAGCCGCCCAGG
Found at i:189659 original size:14 final size:14
Alignment explanation
Indices: 189640--189765 Score: 156
Period size: 14 Copynumber: 9.2 Consensus size: 14
189630 CCCCCTTTCA
*
189640 TTGGTGTGTTGATG
1 TTGGTGTGTTGGTG
189654 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
189668 TT-G-GTGTTGGTG
1 TTGGTGTGTTGGTG
189680 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
189694 TTGGTGT-TGGTGTG
1 TTGGTGTGTTG-GTG
189708 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
189722 TT-G-GTGTTGGTG
1 TTGGTGTGTTGGTG
*
189734 -TGTTGGTGTTGGTG
1 TTGGT-GTGTTGGTG
189748 TTGGTGGTGTTGGTG
1 TTGGT-GTGTTGGTG
189763 TTG
1 TTG
189766 TTGTTTGTTG
Statistics
Matches: 99, Mismatches: 5, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
11 1 0.01
12 20 0.20
13 5 0.05
14 55 0.56
15 18 0.18
ACGTcount: A:0.01, C:0.00, G:0.49, T:0.50
Consensus pattern (14 bp):
TTGGTGTGTTGGTG
Left flanking sequence: Indices 189140 -- 189639
TCGCTTGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGGAGGCAGCGACAAGCAAAAAGA
AAATCAAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCGTGG
TGATACTTGCTCACCACAGCCTCGGTGCTGCTTCTACTTCTGATGGAGTCTCTCGGCAGGGTCAT
TATTCGTTGGCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGCTTGTT
ACTGGTGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGC
TTCTACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATC
GCCACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTAGCCA
TATGAGAGACGAGATCAGAAGTACTAGCGGTACCACCCCCTTTCA
Right flanking sequence: Indices 189766 -- 190265
TTGTTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGCTGTTTTAAGGGTTGG
ATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTATCCGATTCGATTCGTTGGATCG
GGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGTTGTGCCATTGGTATCCAATCCGGGTTTCTAT
AATTGTTTAGTTAAGCACTTGGTGCGCCTTGGGGATGGCCTGCATGAGCGGGCTACCCTGAAGCC
GTACTGGATGCTTATTGTCGTATATAGGATATATACAGGTTCGCCATAATCAACGCTATCTACGG
TACCAACAGTAAAGTCACGTGATCCAGATCACACGACGTGTAAGCCGCATTAGGCATTATAGCTC
GTAATGCGGCTAACATAACGTGTTATGTAATGCTCGTAAAGTCTTGGGCGAATTCTGAAGGGTCG
TCGTATAGCTCGTCGTATAGTGGGGGTGGTCGTTTGTTAGAGGGG
Found at i:189668 original size:6 final size:6
Alignment explanation
Indices: 189645--189811 Score: 141
Period size: 6 Copynumber: 28.0 Consensus size: 6
189635 TTTCATTGGT
*
189645 GTGTTG ATGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTTG
* *
189697 GTGTTG GTG-TG TTGGT- GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTTG
* * *
189745 GTGTT- G-G-TG GTGTTG GTGTTG TTGTT- -TGTTG CTGTTG CTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG
* * * *
189788 CTGTTG CTGTTG CTGTTG CTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG
189812 CTGCTGTTTT
Statistics
Matches: 142, Mismatches: 6, Indels: 26
0.82 0.03 0.15
Matches are distributed among these distances:
3 1 0.01
4 6 0.04
5 9 0.06
6 106 0.75
7 6 0.04
8 14 0.10
ACGTcount: A:0.01, C:0.04, G:0.45, T:0.51
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 189145 -- 189644
TGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGGAGGCAGCGACAAGCAAAAAGAAAATC
AAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGCTTCTACTTCTGATGGAGTCTCTCGGCAGGGTCATTATTC
GTTGGCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGCTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTAGCCATATGA
GAGACGAGATCAGAAGTACTAGCGGTACCACCCCCTTTCATTGGT
Right flanking sequence: Indices 189812 -- 190311
CTGCTGTTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTATCC
GATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGTTGTGCCATTGGT
ATCCAATCCGGGTTTCTATAATTGTTTAGTTAAGCACTTGGTGCGCCTTGGGGATGGCCTGCATG
AGCGGGCTACCCTGAAGCCGTACTGGATGCTTATTGTCGTATATAGGATATATACAGGTTCGCCA
TAATCAACGCTATCTACGGTACCAACAGTAAAGTCACGTGATCCAGATCACACGACGTGTAAGCC
GCATTAGGCATTATAGCTCGTAATGCGGCTAACATAACGTGTTATGTAATGCTCGTAAAGTCTTG
GGCGAATTCTGAAGGGTCGTCGTATAGCTCGTCGTATAGTGGGGGTGGTCGTTTGTTAGAGGGGG
CCGTTTACACATTCAGACGCACTGAAATTTATTAGAGGGGGCCGG
Found at i:189670 original size:20 final size:20
Alignment explanation
Indices: 189645--189793 Score: 159
Period size: 20 Copynumber: 7.6 Consensus size: 20
189635 TTTCATTGGT
*
189645 GTGTTGATGTTGGTGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
*
189665 GTGTTGGTGTTGGTGT-TGG
1 GTGTTGGTGTTGGTGTGTTG
189684 TGTGTTGGTGTT-G-GTGTT-
1 -GTGTTGGTGTTGGTGTGTTG
189702 G-G-T-GTGTTGGTGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
189719 GTGTTGGTGTTGGTGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
189739 GTGTTGGTGTTGGTGGTGTTG
1 GTGTTGGTGTTGGT-GTGTTG
* *
189760 GTGTTGTTGTTTGTTGCTGTTG
1 GTGTTGGTG-TTGGTG-TGTTG
* *
189782 CTGTTGCTGTTG
1 GTGTTGGTGTTG
189794 CTGTTGCTGT
Statistics
Matches: 111, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
14 5 0.05
15 2 0.02
16 6 0.05
17 2 0.02
18 3 0.03
19 5 0.05
20 54 0.49
21 18 0.16
22 16 0.14
ACGTcount: A:0.01, C:0.02, G:0.46, T:0.51
Consensus pattern (20 bp):
GTGTTGGTGTTGGTGTGTTG
Left flanking sequence: Indices 189145 -- 189644
TGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGGAGGCAGCGACAAGCAAAAAGAAAATC
AAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGCTTCTACTTCTGATGGAGTCTCTCGGCAGGGTCATTATTC
GTTGGCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGCTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTAGCCATATGA
GAGACGAGATCAGAAGTACTAGCGGTACCACCCCCTTTCATTGGT
Right flanking sequence: Indices 189794 -- 190293
CTGTTGCTGTTGCTGTTGCTGCTGTTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTG
GTGGTGTCAGTGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCT
GTTGGTTGTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTTTAGTTAAGCACTTGGTGCGCC
TTGGGGATGGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGATGCTTATTGTCGTATATAGG
ATATATACAGGTTCGCCATAATCAACGCTATCTACGGTACCAACAGTAAAGTCACGTGATCCAGA
TCACACGACGTGTAAGCCGCATTAGGCATTATAGCTCGTAATGCGGCTAACATAACGTGTTATGT
AATGCTCGTAAAGTCTTGGGCGAATTCTGAAGGGTCGTCGTATAGCTCGTCGTATAGTGGGGGTG
GTCGTTTGTTAGAGGGGGCCGTTTACACATTCAGACGCACTGAAA
Found at i:195881 original size:144 final size:144
Alignment explanation
Indices: 195635--196146 Score: 686
Period size: 144 Copynumber: 3.6 Consensus size: 144
195625 GGAAGTCTGA
* * *
195635 GTGGTCAACGAGCCATCCTCGTCGGTGGTCACAATAACAACCCCAGAGTCGGTGGCAGTGAAGCC
1 GTGGTCAACGAGCCATCTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTGGCAGTGGAGCC
* ** ** * * * * * *
195700 ATCTTCATCGGTGGTGGCATAAGT--AATGGTGTACTCGGTGCACTCCTCGCAAGTGGGGCGAGG
66 ATCTTCATCCGTGGTCTCCCAGGTCGAA--GTGTGCTCGGTGCACTCCTCACAAGTAGGACGGGG
195763 AATGACCGAGGTCAGG
129 AATGACCGAGGTCAGG
* * * * *
195779 GTGGTCAACGAGCCATTTTCGTCAGTGGTCACAATCACCACACCAGAGTCAGTGGCAGTGGAGCC
1 GTGGTCAACGAGCCATCTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTGGCAGTGGAGCC
* * *
195844 ATCTTCGTCCGTGGTCTCCCAGGTCGAAGTGTGCTCGGTGCACTCCTCACAGGTTGGACGGGGAA
66 ATCTTCATCCGTGGTCTCCCAGGTCGAAGTGTGCTCGGTGCACTCCTCACAAGTAGGACGGGGAA
195909 TGACCGAGGTCAGG
131 TGACCGAGGTCAGG
* * *
195923 GTGGTCAACGAGCCGTCTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTAGCAGTGTAGCC
1 GTGGTCAACGAGCCATCTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTGGCAGTGGAGCC
* * * * *
195988 ATTTTCGTCCGTAGTCTCCCAGGTCGAAGTGTGCTCAGTACACTCCTCACAAGTAGGACGGGGAA
66 ATCTTCATCCGTGGTCTCCCAGGTCGAAGTGTGCTCGGTGCACTCCTCACAAGTAGGACGGGGAA
196053 TGACCGAGGTCAGG
131 TGACCGAGGTCAGG
* * *
196067 GTGGTCAACGAGCCGTCGTCGTCAGTGGTCACAATAACAATCCCAGAGTCGGTGGCAGTGGAGCC
1 GTGGTCAACGAGCCATCTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTGGCAGTGGAGCC
*
196132 ATCTTCATCGGTGGT
66 ATCTTCATCCGTGGT
196147 GGCATAAGTC
Statistics
Matches: 323, Mismatches: 43, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
144 321 0.99
146 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.21
Consensus pattern (144 bp):
GTGGTCAACGAGCCATCTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTGGCAGTGGAGCC
ATCTTCATCCGTGGTCTCCCAGGTCGAAGTGTGCTCGGTGCACTCCTCACAAGTAGGACGGGGAA
TGACCGAGGTCAGG
Left flanking sequence: Indices 195135 -- 195634
CGGATGAGGAGTACTCATTGCAATCAACGCATTCCGTAGAGGTTTCGAAGGTTTTCACTGAAGTG
GCCAATTGACCATTTTCGTCACTTGTCACAACAACAGCACCAGAACTGGTGGAAGTCGAGCCATC
TTCTTCAATTGTCTCCCATGTACTAGCGTATTCAGTGCACTCCTTACACTCAAGATCAGAAAACA
GGGAGATTGAAGTGGTCAACGACTCTTGTTCTTCAGTATTCACATCTGCAGAGCCAATGGCAGTC
GATTCAACTCCGTCGGAGTTGGTGTAAGTCGAAGTGTGATCAGTGCACTCCTCACAGGTAGGACG
GGGAATGATTGAGGTCATGGAGGTTAACAAGCCGTCTTCGTCGGTGGTCACAGTAACAATCGCAG
AGTCGGAGGCAGTGGAGCCGTCCTCGTCGGTAGTCTCCCAAGTGGAAGTGTACTCAGTGCACTCC
TCACAGTAGTCAGAGTTGGTCGGCCGAGGAAGCGTGGAAGTCTGA
Right flanking sequence: Indices 196147 -- 196646
GGCATAAGTCGTGGTGTACTCGGTGCAATCCACGCAGGTGGTACCAGGGCTAGTTGTAGCTAGGG
TCTCAGCCTCTTTGTCGGGGACCACCGTAGACTCTGCCGGTGGATACTGTAATTTGGTTGTAGTC
GACGTAGAGGTGGTGTGACTTGAGGATTCTGACGACAGAGTACTTGAGGTTGAAGTGGTCGAGGA
AGACAGGACAACGCATGAAGGTGTTTTGCATTGTAATGGAGGACACAGCCCACACTCTTCGGCAA
TCGCGGCTCCTTCAGGAACAGGGCCGCGGTATTTAAATACTAGACCATTTTCCAACTGACCGTAT
TCGCAAACAAAAAGGTCTCTGTCATATCCAGGTCCTAAGTCAATTTTGACCGACGTTTTATACCA
TTCATGGGTGTAGCGAATATATCTTCCATCGTAGACAAAATTCTGCAGAATCCCACTGAGTTCCA
TACCCTCACCAAATCCACGGATAGTCATGTTATTTTTGACCCAAC
Found at i:196171 original size:288 final size:294
Alignment explanation
Indices: 195420--196173 Score: 801
Period size: 288 Copynumber: 2.6 Consensus size: 294
195410 GAGTTGGTGT
* * ** * * *
195420 AAGTCGAAGTGTGATCAGTGCACTCCTCACAGGTAGGACGGGGAATGATTGAGGTCATGGAGGTT
1 AAGTCGAAGTGTGCTCAGTGCACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTC
* * * * * * *
195485 AACAAGCCGTCTTCGTCGGTGGTCACAGTAACAATCGCAGAGTCGGAGGCAGTGGAGCCGTCCTC
66 AACGAGCCGTCTTCGTCAGTGGTCACAATAACAATCCCAGAGTCGGTGGCAGTGGAGCCATCTTC
* * * *
195550 GTCGGTAGTCTCCCAAGTGGAAGTGTACTCAGTGCACTCCTCACAGTAGTCAGAGTTGGTCGGCC
131 GTCGGTGGTCTCCCAAGTCGAAGTGTACTCGGTGCACTCCT-ACA--AG-CAGAGTTGGACGG-C
* * *
195615 GAGGAAGCGTGGAAGTCTGAGTGGTCAACGAGCCATCCTCGTCGGTGGTCACAATAACAACCCCA
191 GAGGAAGCG-CGAAGTCAGAGTGGTCAACGAGCCATCCTCGTCAGTGGTCACAATAACAACCCCA
* * * * *
195680 GAGTCGGTGGCAGTGAAGCCATCTTCATCGGTGGTGGCAT
255 GAGTCGGTAGCAGTGAAGCCATCTTCATCCGTAGTCGCAC
* * * * * *
195720 AAGT--AATGGTGTACTCGGTGCACTCCTCGCAAGTGGGGCGAGGAATGACCGAGGTCAGGGTGG
1 AAGTCGAA--GTGTGCTCAGTGCACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGG
* * * * *
195783 TCAACGAGCCATTTTCGTCAGTGGTCACAATCACCA-CACCAGAGTCAGTGGCAGTGGAGCCATC
64 TCAACGAGCCGTCTTCGTCAGTGGTCACAATAACAATC-CCAGAGTCGGTGGCAGTGGAGCCATC
* * *
195847 TTCGTCCGTGGTCTCCCAGGTCGAAGTGTGCTCGGTGCACTCCT-C-A-CAG-GTTGGAC-G-G-
128 TTCGTCGGTGGTCTCCCAAGTCGAAGTGTACTCGGTGCACTCCTACAAGCAGAGTTGGACGGCGA
* * * *
195905 GGAATGAC-CGAGGTCAGGGTGGTCAACGAGCCGTCTTCGTCAGTGGTCACAATAACAACCCCAG
193 GGAA-G-CGCGAAGTCAGAGTGGTCAACGAGCCATCCTCGTCAGTGGTCACAATAACAACCCCAG
* * * * *
195969 AGTCGGTAGCAGTGTAGCCATTTTCGTCCGTAGTCTCCC
256 AGTCGGTAGCAGTGAAGCCATCTTCATCCGTAGTCGCAC
* *
196008 AGGTCGAAGTGTGCTCAGTACACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTC
1 AAGTCGAAGTGTGCTCAGTGCACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTC
*
196073 AACGAGCCGTCGTCGTCAGTGGTCACAATAACAATCCCAGAGTCGGTGGCAGTGGAGCCATCTTC
66 AACGAGCCGTCTTCGTCAGTGGTCACAATAACAATCCCAGAGTCGGTGGCAGTGGAGCCATCTTC
* ** ** **
196138 ATCGGTGGTGGCATAAGTCGTGGTGTACTCGGTGCA
131 GTCGGTGGTCTCCCAAGTCGAAGTGTACTCGGTGCA
196174 ATCCACGCAG
Statistics
Matches: 373, Mismatches: 73, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
288 218 0.58
289 3 0.01
290 3 0.01
291 1 0.00
292 6 0.02
293 3 0.01
295 1 0.00
298 3 0.01
299 1 0.00
300 134 0.36
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.21
Consensus pattern (294 bp):
AAGTCGAAGTGTGCTCAGTGCACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTC
AACGAGCCGTCTTCGTCAGTGGTCACAATAACAATCCCAGAGTCGGTGGCAGTGGAGCCATCTTC
GTCGGTGGTCTCCCAAGTCGAAGTGTACTCGGTGCACTCCTACAAGCAGAGTTGGACGGCGAGGA
AGCGCGAAGTCAGAGTGGTCAACGAGCCATCCTCGTCAGTGGTCACAATAACAACCCCAGAGTCG
GTAGCAGTGAAGCCATCTTCATCCGTAGTCGCAC
Left flanking sequence: Indices 194920 -- 195419
TGACTCCGAGAAATGCAACAGAGAGACATCCTCGGTGTTGATTTCGACTTGCGATACAACCAGTT
CAGAACGAAGCGTAGAGTCAAAGTCACACTCAGAACATTCGGTGTCCAGAGCAGGTGAAGGAATG
AGAGTGGTCGAGGGGCTTTCTCCTGCGATAGTGTTATCAGTGTTACCAGAATTAGTTGCATGAAC
ATCGGCATCCCCGTGGTTCTCGGATGAGGAGTACTCATTGCAATCAACGCATTCCGTAGAGGTTT
CGAAGGTTTTCACTGAAGTGGCCAATTGACCATTTTCGTCACTTGTCACAACAACAGCACCAGAA
CTGGTGGAAGTCGAGCCATCTTCTTCAATTGTCTCCCATGTACTAGCGTATTCAGTGCACTCCTT
ACACTCAAGATCAGAAAACAGGGAGATTGAAGTGGTCAACGACTCTTGTTCTTCAGTATTCACAT
CTGCAGAGCCAATGGCAGTCGATTCAACTCCGTCGGAGTTGGTGT
Right flanking sequence: Indices 196174 -- 196673
ATCCACGCAGGTGGTACCAGGGCTAGTTGTAGCTAGGGTCTCAGCCTCTTTGTCGGGGACCACCG
TAGACTCTGCCGGTGGATACTGTAATTTGGTTGTAGTCGACGTAGAGGTGGTGTGACTTGAGGAT
TCTGACGACAGAGTACTTGAGGTTGAAGTGGTCGAGGAAGACAGGACAACGCATGAAGGTGTTTT
GCATTGTAATGGAGGACACAGCCCACACTCTTCGGCAATCGCGGCTCCTTCAGGAACAGGGCCGC
GGTATTTAAATACTAGACCATTTTCCAACTGACCGTATTCGCAAACAAAAAGGTCTCTGTCATAT
CCAGGTCCTAAGTCAATTTTGACCGACGTTTTATACCATTCATGGGTGTAGCGAATATATCTTCC
ATCGTAGACAAAATTCTGCAGAATCCCACTGAGTTCCATACCCTCACCAAATCCACGGATAGTCA
TGTTATTTTTGACCCAACCGAGATATCCAGTTGAGCCAGGGCCAA
Found at i:210714 original size:6 final size:6
Alignment explanation
Indices: 210703--210847 Score: 147
Period size: 6 Copynumber: 24.0 Consensus size: 6
210693 TTTTATTGGT
210703 GTGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTTG
210755 GTGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTT- G-G-TG GTGTTG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG
* * * * * *
210802 GTGTTG TTGTT- -TGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG
210848 TTTTAAGGGT
Statistics
Matches: 127, Mismatches: 1, Indels: 22
0.85 0.01 0.15
Matches are distributed among these distances:
3 1 0.01
4 6 0.05
5 2 0.02
6 97 0.76
7 6 0.05
8 15 0.12
ACGTcount: A:0.00, C:0.03, G:0.46, T:0.51
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 210203 -- 210702
GCACCCTGCAAGCCCGGCTCCATTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAAGAAATCA
AAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTTATGGAGTCTCCCGGCTGGGTCATTATCC
GTTGGCGCTTCGCGCGATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGG
TAGGTTGGCCACCTACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGG
GAGACGATATCAGAAGTACTAGCGGTACCACCCCCTTTTATTGGT
Right flanking sequence: Indices 210848 -- 211347
TTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTATCCGATTCG
ATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATTGGCATCCAA
TCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGAGTAGCCTGCATGAGCGGG
CTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATATATACAGGTTCGCCATAAT
CAACGCTGTCTACGGTATCAATGGTAAAGTCACGTGATCAAAGTCACACGACCTGTAAGCCGCAT
TAGGCTATATAGCTCGTAAAGCGGCTAACATAACGTGTTATGTAATGCTCGTAATGTCTTCGTCG
TATAGCTCGTCGTATAGTCGGGGTGGTCATTTGTTAGAGGGGGCCGTTTTTACCTGCAGACCTCT
GAAATTTGTTAGAGGGGGCCGGTTACTAGTTGGTCACGTGATCAG
Found at i:210736 original size:26 final size:26
Alignment explanation
Indices: 210703--210812 Score: 202
Period size: 26 Copynumber: 4.2 Consensus size: 26
210693 TTTTATTGGT
210703 GTGTTGGTGTTGGTGTGTTGGTGTTG
1 GTGTTGGTGTTGGTGTGTTGGTGTTG
210729 GTGTTGGTGTTGGTGTGTTGGTGTTG
1 GTGTTGGTGTTGGTGTGTTGGTGTTG
210755 GTGTTGGTGTTGGTGTGTTGGTGTTG
1 GTGTTGGTGTTGGTGTGTTGGTGTTG
210781 GTGTTGGTGTTGGTGGTGTTGGTGTTG
1 GTGTTGGTGTTGGT-GTGTTGGTGTTG
*
210808 TTGTT
1 GTGTT
210813 TGTTGCTGTT
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
26 66 0.80
27 16 0.20
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (26 bp):
GTGTTGGTGTTGGTGTGTTGGTGTTG
Left flanking sequence: Indices 210203 -- 210702
GCACCCTGCAAGCCCGGCTCCATTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAAGAAATCA
AAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTTATGGAGTCTCCCGGCTGGGTCATTATCC
GTTGGCGCTTCGCGCGATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGG
TAGGTTGGCCACCTACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGG
GAGACGATATCAGAAGTACTAGCGGTACCACCCCCTTTTATTGGT
Right flanking sequence: Indices 210813 -- 211312
TGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTTTAAGGGTTGGATGCCAATGGCTCCTTT
TCCCCCTGTTGGTGGTGTCAGTGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGT
TTTTTCCCCCTGTTGGTGGTGCCATTGGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCA
CTGGGTGCGCCTTCGGAGTAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATAT
TGTAGTATATAGGATATATACAGGTTCGCCATAATCAACGCTGTCTACGGTATCAATGGTAAAGT
CACGTGATCAAAGTCACACGACCTGTAAGCCGCATTAGGCTATATAGCTCGTAAAGCGGCTAACA
TAACGTGTTATGTAATGCTCGTAATGTCTTCGTCGTATAGCTCGTCGTATAGTCGGGGTGGTCAT
TTGTTAGAGGGGGCCGTTTTTACCTGCAGACCTCTGAAATTTGTT
Found at i:212902 original size:21 final size:21
Alignment explanation
Indices: 212873--212940 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
212863 AATCAAACAT
*
212873 TGACCACTTACGGTGCTTGTC
1 TGACAACTTACGGTGCTTGTC
212894 TGACAACTTACGGTGCTTGTC
1 TGACAACTTACGGTGCTTGTC
*
212915 TGACAACTTACAGTGCTTGTC
1 TGACAACTTACGGTGCTTGTC
212936 TGACA
1 TGACA
212941 CCTACAGTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (21 bp):
TGACAACTTACGGTGCTTGTC
Left flanking sequence: Indices 212373 -- 212872
CAAATGCCTATATCATCTGTCTACCCGATATTAGGCTCTGTATGCGTCCCTCTTACCATTTTGGG
TGTAGTCACGTGATACACTTCATAGAAGCGACGCCTAATATCCCCCACCGGTCTGATTTCCGGTT
GTTGAGAAGGTTCAAGCACTCTAAACCACGTAAAACACCCTTTTAAGTGCCCGCGCAGCCATCCC
TACATGCAACCTCTGTCTAAAACGCGCTTTCGGGCATTAGGCGGTTAAAATACCCCCTATAGCTG
TCTTCAGATGTGCCACCAGCGTCAAAGCACTGCCTACATACCCAAGAAACGCCCCTCTGTACAAC
CCACCCAGACCCAGCCACGCCAAGTCTCCTGCTCGTATTTTACGATGCAGCGGCCGTGGTTCCTG
ACCGTCTCCTGCAGATAAGCAACCTAAACAACGTGTAAAGGTTGCTGTTGACACCAGAGCCACGA
GCGTCAGCAGCCATGCCGTTGATCACACGTGTCGTAATCAAACAT
Right flanking sequence: Indices 212941 -- 213440
CCTACAGTGCTCTAATGCAGACATCAGTGGCCATCACCAGGCACAGACGTCAGCCAGTACTAATC
ACTAGTCACGTCAATTGACCAGCCAAGTGGTTGCTTCATGGTGGACGTCATCAACCTGGTGGCTT
GGTCGCCATCTTCAATCACATTCACCATTCTTTGCACATTTTCTGAAAAATTCAAACCAGTATCT
TAATACTACACTGTATAAAGTGCCATACAACCTACAGTTCCACTCCCCTCACCACACCACTACAC
TACTAGGTCACCACCCCGCCCCCCACCACACCCTCACACCCCATCCCCCACCAACCACTCTCAAC
CGTCCTCTCCCCCCACTTTTCCCACGGTGCCTCCACCTATCCAAAATTACCTATTTCGGCGACCC
GCCTCACGTGACCTGGCCCGTTGCAAACCTCCGCGCGTTCGCACTATTTTTCACTCTCTACCAAG
CTCTGTTTATCCACTGCCTATCCACAACCCCCACCTCCATGAGCT
Found at i:212948 original size:20 final size:21
Alignment explanation
Indices: 212873--212951 Score: 115
Period size: 21 Copynumber: 3.8 Consensus size: 21
212863 AATCAAACAT
* *
212873 TGACCACTTACGGTGCTTGTC
1 TGACAACTTACAGTGCTTGTC
*
212894 TGACAACTTACGGTGCTTGTC
1 TGACAACTTACAGTGCTTGTC
212915 TGACAACTTACAGTGCTTGTC
1 TGACAACTTACAGTGCTTGTC
*
212936 TGAC-ACCTACAGTGCT
1 TGACAACTTACAGTGCT
212952 CTAATGCAGA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
20 11 0.20
21 44 0.80
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
TGACAACTTACAGTGCTTGTC
Left flanking sequence: Indices 212373 -- 212872
CAAATGCCTATATCATCTGTCTACCCGATATTAGGCTCTGTATGCGTCCCTCTTACCATTTTGGG
TGTAGTCACGTGATACACTTCATAGAAGCGACGCCTAATATCCCCCACCGGTCTGATTTCCGGTT
GTTGAGAAGGTTCAAGCACTCTAAACCACGTAAAACACCCTTTTAAGTGCCCGCGCAGCCATCCC
TACATGCAACCTCTGTCTAAAACGCGCTTTCGGGCATTAGGCGGTTAAAATACCCCCTATAGCTG
TCTTCAGATGTGCCACCAGCGTCAAAGCACTGCCTACATACCCAAGAAACGCCCCTCTGTACAAC
CCACCCAGACCCAGCCACGCCAAGTCTCCTGCTCGTATTTTACGATGCAGCGGCCGTGGTTCCTG
ACCGTCTCCTGCAGATAAGCAACCTAAACAACGTGTAAAGGTTGCTGTTGACACCAGAGCCACGA
GCGTCAGCAGCCATGCCGTTGATCACACGTGTCGTAATCAAACAT
Right flanking sequence: Indices 212952 -- 213451
CTAATGCAGACATCAGTGGCCATCACCAGGCACAGACGTCAGCCAGTACTAATCACTAGTCACGT
CAATTGACCAGCCAAGTGGTTGCTTCATGGTGGACGTCATCAACCTGGTGGCTTGGTCGCCATCT
TCAATCACATTCACCATTCTTTGCACATTTTCTGAAAAATTCAAACCAGTATCTTAATACTACAC
TGTATAAAGTGCCATACAACCTACAGTTCCACTCCCCTCACCACACCACTACACTACTAGGTCAC
CACCCCGCCCCCCACCACACCCTCACACCCCATCCCCCACCAACCACTCTCAACCGTCCTCTCCC
CCCACTTTTCCCACGGTGCCTCCACCTATCCAAAATTACCTATTTCGGCGACCCGCCTCACGTGA
CCTGGCCCGTTGCAAACCTCCGCGCGTTCGCACTATTTTTCACTCTCTACCAAGCTCTGTTTATC
CACTGCCTATCCACAACCCCCACCTCCATGAGCTCCACGCTGCTG
Found at i:219143 original size:15 final size:15
Alignment explanation
Indices: 219125--219154 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
219115 CTCTAAGGAC
219125 GACTCTAAGGACTCG
1 GACTCTAAGGACTCG
219140 GACTCTAAGGACTCG
1 GACTCTAAGGACTCG
219155 AACACCAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (15 bp):
GACTCTAAGGACTCG
Left flanking sequence: Indices 218625 -- 219124
CTGGCGACGTGGCGCTCGTGATTGACGCTGTGGACGCTGTGTGCAGCTTGGAGTTGCCGGTACCC
GCGGTGCTCGAGGACTTTGTGTGGAACCGGGTGGTGTGCGAGCCGCTGGTGCACTTGCGGTTGGG
CTACTTGCACGGGGTGTTGGACTACGTGGCGGCCAACGACGCGGTGCGGACCAAGATCTTTTTGT
TTAAGCACGTGGTGAACGCGGTGCTTGTGTACGACAAGGCGCGGTACGGGCTGTTGAAGCACTTG
GTTGGCGTGGAGAGCGACTTTGCGGAGGAGGCAGAGTATAGGAAGCGGGTGGATGGGAAGGAGAA
GGGGGAGAAGGAAGGGAAGGAGGTTAAGGACGAGGACGAGGAGATGGAGGAGAAGGACGAGTCGA
AGGCGAACGGGTCCATGGAGTCTAACGAGGAGGCAGAGAAAGAGTCTAAGGAGAAGGATGAGGAG
AAGGAGAAGGACGAGAAAGACTCTAAAGACGAAGGCTCTAAGGAC
Right flanking sequence: Indices 219155 -- 219654
AACACCAAGGACGAGTCTGACTCCAACGACTCCAAGGACAAGACCGCTGTCTCGTCTGCTGCCTC
TCCCCCCCCACCCCACCTCCTCCCGGGCCTCCCGCAGCAACTGTGGGTGTCCAAGGTCCACGAAA
CCATCTGGCAGGCCAACAAGGACATCATCCACAACCGCCTGGCGGGCTTCCTCGACAACTACCGC
TACGTGTTGCTCGAGCTCACCGCCATCTTGCTCGACGGCGCGCCCGACCACCTCGAGGAGGTTCG
CAAGGACATCATCAAGTTTGCGTGGAACTACCTCAAGCTCGACGACCACATCACCAAGCAGGTGG
CGTACGTGACCACGGCGTTGTTCATCCTGAAGTTCGACACGCCGACGCCGTTGGTGACCCAGGTG
TTCATGGCCCTTTTGAAAACGCACCAGAGCGAGTGCCGCCACTTGGTGCGCCAGGCACTCGACTT
GTTGGCGCCGGTGATGGCCGCGCGCCCGGCCGGGCTGTGGTTGCG
Found at i:219937 original size:12 final size:12
Alignment explanation
Indices: 219920--219944 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
219910 GGGCAAGGAG
219920 GTCAAGGACGGT
1 GTCAAGGACGGT
219932 GTCAAGGACGGT
1 GTCAAGGACGGT
219944 G
1 G
219945 ATAAAGACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.44, T:0.16
Consensus pattern (12 bp):
GTCAAGGACGGT
Left flanking sequence: Indices 219420 -- 219919
ACATCATCAAGTTTGCGTGGAACTACCTCAAGCTCGACGACCACATCACCAAGCAGGTGGCGTAC
GTGACCACGGCGTTGTTCATCCTGAAGTTCGACACGCCGACGCCGTTGGTGACCCAGGTGTTCAT
GGCCCTTTTGAAAACGCACCAGAGCGAGTGCCGCCACTTGGTGCGCCAGGCACTCGACTTGTTGG
CGCCGGTGATGGCCGCGCGCCCGGCCGGGCTGTGGTTGCGCTGGCCGCGGCGGGTGATCTCCGAG
GACGGCTTCAACGTCACCAACGTGCTCAACGTGTACCAGTTCATTGTCCACCACCCGGACTTGTT
CTTCCCGGCGCGCGAGCACTTTATCGGCAACATGATCACAGCCATGGGCAAGTTGACCATCCAGG
TGAACCCTGCGATCGAGAACCAGGTGTTGGCGATCGAGCTTTCCGAGTTGATTTTGAAGTGGGAG
AACAAGGCGAACGAGGTGAAGAAGGAGGGGGACAAGGGCAAGGAG
Right flanking sequence: Indices 219945 -- 220444
ATAAAGACGATGCCATGGATGGAGGCAATGACGACGACGACGACGCCATGGATGTCGACGACGAC
ACCAAGAAGGATGACGTCACCAAGGACAACGCCAATGACGTCACCAATGACTCCACCAACTCTAC
TGCCAATGACTCCACGTCCACCGACGACTTTGGCACCTCGCCCGGGTACTCGGTCCCGTTTGGCC
AGCGCGAGGCGTGTGTCACCTTCCTCATCCGCTACGTGTGCATCCTGCCCCAACGAGCATCCGAA
CTGGAGCTCGGCCAAAAGGCACTCGGCATCCTCTACGAGCTCTTGCTGCCCGCCCACTGGCTGCT
GGTGCTGGTCAAGCTCACGTTCTTCGAAAAGTTCTTGTTGCTGAACGACTTGAACCTGGCGCTGG
TGCTTGGCTACTGCCTCAACGCGTTAGAAGTGCTCGGGGTGGTGCTCGAGTGGAAGCTGGCCGAG
TGGATCGTGGCCAACTTGGCGTATCTCCACCGCCTCGTGGAAAAG
Found at i:221403 original size:9 final size:9
Alignment explanation
Indices: 221391--221436 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
221381 CACGGCAATA
221391 ACGGCAACG
1 ACGGCAACG
* *
221400 ACGGGAACA
1 ACGGCAACG
221409 ACGGCAACG
1 ACGGCAACG
221418 A---CAACG
1 ACGGCAACG
221424 ACGGCAACG
1 ACGGCAACG
221433 ACGG
1 ACGG
221437 GATGGAAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
6 6 0.20
9 24 0.80
ACGTcount: A:0.37, C:0.30, G:0.33, T:0.00
Consensus pattern (9 bp):
ACGGCAACG
Left flanking sequence: Indices 220891 -- 221390
GCTCGACAAGGACACGTTGGAGAAGATCATCCGCATCGTCAAGGGGTGGGTGTTTGACCGCACCG
ACTTGTTCCCCACCACCAAGGAGAAGGCGGTGATTCTCGGCAAGATGATGGTGTTTGAGATCCGC
GGCGAGCCCGCGTTGCTGAAGGAGTTCTACCAGATCATCGTCGACATCTTCGAGGACGACCTGTT
CCTGTGCTCCGAGCTCACGGTGCGCATGGAGCAGCCGTTCCTCGTGGGCACGCGGCTGGCGGACG
TGGGCATCCGCCGCAAGCTCATGCTGATCTTGACCAGCCTGCTCGAGGTGGACATCGCCAAGCGG
TTGTACTACGTGGTGCGCCAGCAAAACTGGGAGTACCTCGCGGACTACCCGTGGCTCAACCAGGC
GCTCCAGTTGTTGTTGGGCCTGTTTGATCCCGAGTACCCGCTCCGGCTCGTGGAGCTGGAGCCGC
GGTTGGCGCCGCTCACAGCTTTCCCCTACAGGGCCCACGGCAATA
Right flanking sequence: Indices 221437 -- 221936
GATGGAAGTAGACCTGGAGGCGAGTCCCGAGCTCGCCCGCCTCTTGGCCGACCACAACGCGTTCC
TCGCGCTGCTCGACGTGGACGCGGGCCAGCTCATCGAGCCGCTCGTGGACACCTTCTACCAGCTG
CCGGCGTGTGTGGCGGCCGCGTGGTCGCAGTTGTTCCCGTTGGCGTTCTCCGCCATCCCCCGTGG
CGAGCACTTGGACTTCACCCGGGCGATGGTGGTGCTCCTCTCCAAGGACTACCACACCCGCCAGG
TGGACTCGCGGCCCAACGTGGTGCAGATGTTGCTCGACGGGGCGCTGCGGTGCGGGCTCGAGCTC
CCGCCCTTGGCGGTGGAGTGCTTGGGCGCCAACTTCGACGCGTGGACCCAGGCGATTGCGCTCTT
GGAGGCCACCGAGGAGCGCACCGCCCAGGCCGCCACCGCCGACGTGCGCGAGGTGACGCAGGACG
CGCTCGCCAAGCTCTACGCGCTGCTCCGCGAGGACGACATGTTCT
Found at i:221422 original size:24 final size:24
Alignment explanation
Indices: 221390--221436 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
221380 CCACGGCAAT
* *
221390 AACGGCAACGACGGGAACAACGGC
1 AACGACAACGACGGCAACAACGGC
*
221414 AACGACAACGACGGCAACGACGG
1 AACGACAACGACGGCAACAACGG
221437 GATGGAAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.30, G:0.32, T:0.00
Consensus pattern (24 bp):
AACGACAACGACGGCAACAACGGC
Left flanking sequence: Indices 220890 -- 221389
TGCTCGACAAGGACACGTTGGAGAAGATCATCCGCATCGTCAAGGGGTGGGTGTTTGACCGCACC
GACTTGTTCCCCACCACCAAGGAGAAGGCGGTGATTCTCGGCAAGATGATGGTGTTTGAGATCCG
CGGCGAGCCCGCGTTGCTGAAGGAGTTCTACCAGATCATCGTCGACATCTTCGAGGACGACCTGT
TCCTGTGCTCCGAGCTCACGGTGCGCATGGAGCAGCCGTTCCTCGTGGGCACGCGGCTGGCGGAC
GTGGGCATCCGCCGCAAGCTCATGCTGATCTTGACCAGCCTGCTCGAGGTGGACATCGCCAAGCG
GTTGTACTACGTGGTGCGCCAGCAAAACTGGGAGTACCTCGCGGACTACCCGTGGCTCAACCAGG
CGCTCCAGTTGTTGTTGGGCCTGTTTGATCCCGAGTACCCGCTCCGGCTCGTGGAGCTGGAGCCG
CGGTTGGCGCCGCTCACAGCTTTCCCCTACAGGGCCCACGGCAAT
Right flanking sequence: Indices 221437 -- 221936
GATGGAAGTAGACCTGGAGGCGAGTCCCGAGCTCGCCCGCCTCTTGGCCGACCACAACGCGTTCC
TCGCGCTGCTCGACGTGGACGCGGGCCAGCTCATCGAGCCGCTCGTGGACACCTTCTACCAGCTG
CCGGCGTGTGTGGCGGCCGCGTGGTCGCAGTTGTTCCCGTTGGCGTTCTCCGCCATCCCCCGTGG
CGAGCACTTGGACTTCACCCGGGCGATGGTGGTGCTCCTCTCCAAGGACTACCACACCCGCCAGG
TGGACTCGCGGCCCAACGTGGTGCAGATGTTGCTCGACGGGGCGCTGCGGTGCGGGCTCGAGCTC
CCGCCCTTGGCGGTGGAGTGCTTGGGCGCCAACTTCGACGCGTGGACCCAGGCGATTGCGCTCTT
GGAGGCCACCGAGGAGCGCACCGCCCAGGCCGCCACCGCCGACGTGCGCGAGGTGACGCAGGACG
CGCTCGCCAAGCTCTACGCGCTGCTCCGCGAGGACGACATGTTCT
Found at i:227121 original size:10 final size:10
Alignment explanation
Indices: 227106--227142 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
227096 TATAATCTTG
227106 CGTCTATTTA
1 CGTCTATTTA
227116 CGTCTATTTA
1 CGTCTATTTA
* *
227126 CGTCTACTCA
1 CGTCTATTTA
227136 CGTCTAT
1 CGTCTAT
227143 ACATCTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.19, C:0.27, G:0.11, T:0.43
Consensus pattern (10 bp):
CGTCTATTTA
Left flanking sequence: Indices 226606 -- 227105
AACGTGCTTCGCATTTGCAGCCACTACCGAGGCACTACCGATGCTTATTTCTTTTTTCGGACCTG
TTACCGAGGCTCATCGCTGCGGTTACGAGCGCGGGGTAACAATAGACTGGGGTCATGTGGTGTGG
AGTTCCGAGCTGAGAGGGAGGTAATGGGCGGCGAAGACAGGGTCAATGGGTAATAATAACAGCTT
GGGAGTGTTTACAAGGCCCGAATTGGTATATCTGACAAAAATCGTAGTTTTTTGAGCCTGTTTCG
CCGTATTCGCCCTCCACCAGCCACCGCGACTTCCTCGGCCCAGCTCGGAGTCCCGATGTTCCATG
CATTTGCGGTTGCACAAGCAGAGGGAAACAGCCGAGGCTGAGGAACGGTCACATCAGCCACTAAG
CACATGGCCAACCACCGTGCACATGGCTCGCTTGGCAATCAGTCTTCCGAGGCTTGACCCACCAA
GACCTCACACCTCTAACTCCCCTAATTACAATCCATATAATCTTG
Right flanking sequence: Indices 227143 -- 227642
ACATCTGGTGTTACATCACACGAATGCACTATTTACATCACTTCGCCTTCATTCTCTCGTAAAGC
GCCCGTTCCACCAGCGGAAACACCTTCTGGCTGAGCTCCACCCCCTCGCTCACCCACACCCCGTA
GGCCCCCATCATGTTGGCCATCATCACGTCGGTGAACAACCGGTCGCCCACCACCGCGATCTCGT
GGGCTCCAATGCCAAACTTACTGTAGTAGTCTAAAATCTCCTGGTGGCACCCGGGCTTCTTGGTC
AGGTGGCGCAACACCAGCACCCCCGTGTTGGCCTCGAGGGCCTTGGCCTGGGCGTGGTCCACGTC
GTCGTTGGTCCCCGCCAGGTTCGACACAATGAGCAACCGGTCCTCGTAGTGGCTCTTGAGCTTGT
CCCAGGTCGACTGGTACGCGGGCCACACCTTGTCGTCGCCGTCCTCCGCAAAGCAGTTGTCCTTG
TCGACAACAACCCCTCGGATGTGGCTGGCTACAGGCACGGGGAGC
Found at i:230003 original size:18 final size:18
Alignment explanation
Indices: 229982--230016 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
229972 TGTACTTGCT
229982 GCTGCCGCTGCCACTGCC
1 GCTGCCGCTGCCACTGCC
* *
230000 GCTGCTGCTGGCACTGC
1 GCTGCCGCTGCCACTGC
230017 TGTCACGGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.43, G:0.31, T:0.20
Consensus pattern (18 bp):
GCTGCCGCTGCCACTGCC
Left flanking sequence: Indices 229482 -- 229981
GTGAAGCGCAAGCGTTTTGAAGAACGTGCCAAGCACTACGCCAAGGGCCAGCTGGCCACGCTCAA
GGAGTTCCACCGGGTCAACAACCAGTTCCGGCTGCGCAAAATGACCGCTCGCGACATTGCTCTGG
CCTACCGCGACTTGTTCAAGGTGCTGGAAGCGGAGACCGCGTTGTTGGTGCACGATTTTGCGGCG
GTGATGGCTGCCCAGCCCGACTTGGCCGAGCAGCTCAACCAGGTGGCGGACCAGCAGAGCCAGGA
GCAGCTGCAGAACGCCCAGTTCCCTGTGCTCACCAAGCTGGCGCGGCTGACCCCAGTGTTGAACC
AGGGGTGGGTGGGCACGTCGCAGGGTCTGCGTAGGGACAACTTCCCTGTGCTCAAAAAGAAGGCT
CCCGTGGCCACCAAGGCTCCTCTCTCGTACAACGGGATCGTGGCTCCCCAGCCCACCCACCGGGT
GAGCGTCAACCGCCAGCAGGCCAACTTCACCCCGCTGTACTTGCT
Right flanking sequence: Indices 230017 -- 230516
TGTCACGGGCGCCGCTGGTGAATGACAACCGGTTCCCTGCGCTTCAGAAGAAGGAGAAGAAGAAG
ATTGCTCGGGTGAACCAGTACAACATCCCCGACCCGAACTCGTGGGGGGCCCAGATGGGGCTGCT
GTCACGACGGGAAGCCGACTTTGGCGTTGGCATCAAGGTGGTGGACAAACGTAAGGGGAAGAAGA
AGGCGCACAACACGTCGGACTTGTTGTAGACACGGTGGGTAGACACGGTGGGTAGACACGGTGGG
TGGCCCCGCCTCATTATAGAAATGCATGGTTAGGACGAAGGAGGAGAAGTGGGTGAGGGATAGAG
AAGGGGAGAGAGGTATGGTAGATAGAACGAATAGAGATAGATTGAAAGGTTGATATGCTGCAGAT
GCTTCTAGGGTGTATGCAATTGGGGAACTACGTCGCTCAGAGCACTTGGGTGGGCCAACGCCTAC
TGCTCTAAATGTGAAAAGTGTATTGTTTGACGCATTCATAGGTTA
Found at i:230255 original size:13 final size:13
Alignment explanation
Indices: 230237--230277 Score: 82
Period size: 13 Copynumber: 3.2 Consensus size: 13
230227 CGGACTTGTT
230237 GTAGACACGGTGG
1 GTAGACACGGTGG
230250 GTAGACACGGTGG
1 GTAGACACGGTGG
230263 GTAGACACGGTGG
1 GTAGACACGGTGG
230276 GT
1 GT
230278 GGCCCCGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.22, C:0.15, G:0.46, T:0.17
Consensus pattern (13 bp):
GTAGACACGGTGG
Left flanking sequence: Indices 229737 -- 230236
CAGGAGCAGCTGCAGAACGCCCAGTTCCCTGTGCTCACCAAGCTGGCGCGGCTGACCCCAGTGTT
GAACCAGGGGTGGGTGGGCACGTCGCAGGGTCTGCGTAGGGACAACTTCCCTGTGCTCAAAAAGA
AGGCTCCCGTGGCCACCAAGGCTCCTCTCTCGTACAACGGGATCGTGGCTCCCCAGCCCACCCAC
CGGGTGAGCGTCAACCGCCAGCAGGCCAACTTCACCCCGCTGTACTTGCTGCTGCCGCTGCCACT
GCCGCTGCTGCTGGCACTGCTGTCACGGGCGCCGCTGGTGAATGACAACCGGTTCCCTGCGCTTC
AGAAGAAGGAGAAGAAGAAGATTGCTCGGGTGAACCAGTACAACATCCCCGACCCGAACTCGTGG
GGGGCCCAGATGGGGCTGCTGTCACGACGGGAAGCCGACTTTGGCGTTGGCATCAAGGTGGTGGA
CAAACGTAAGGGGAAGAAGAAGGCGCACAACACGTCGGACTTGTT
Right flanking sequence: Indices 230278 -- 230777
GGCCCCGCCTCATTATAGAAATGCATGGTTAGGACGAAGGAGGAGAAGTGGGTGAGGGATAGAGA
AGGGGAGAGAGGTATGGTAGATAGAACGAATAGAGATAGATTGAAAGGTTGATATGCTGCAGATG
CTTCTAGGGTGTATGCAATTGGGGAACTACGTCGCTCAGAGCACTTGGGTGGGCCAACGCCTACT
GCTCTAAATGTGAAAAGTGTATTGTTTGACGCATTCATAGGTTATAGTCTTTTCCCATTCTTTGC
TAGGCACTAGTCTATCAATTTAGCAATTTGTTAGTATCATGTGACCTTAATCACGTGACTTTTAT
ATTTCGAACAGAGGTTCTCCTGGGCCTTATTTTCTCGAAATTTTTTTGCGTCGTTCTTATAGCGT
CCGGGTGCTCTTATGGTGAGTTGCAGGCTTATGTAGCTTGGTCTCGCTCCCATGGATGACCCATT
GGGCAACCACAAGCAATTTTGCTTATGTGCACTACAATTCCGTAG
Found at i:232624 original size:63 final size:63
Alignment explanation
Indices: 232557--232736 Score: 168
Period size: 63 Copynumber: 2.9 Consensus size: 63
232547 CAGTGGTTGG
* * *
232557 CAGCTCCAATGAAGAGAAAGATT-CGTCAGTTTGGGTTTCGTCAACGAGACCATCTTCAGTAGA
1 CAGCTCCAATGAAGAG-AAGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATCATCAGTAGA
* * * * * *
232620 CAGCTCCACTGCAGAGACGGTTCCTTCAGTCTGGGTCTCGTCAACGAGACCATCATCATTAGA
1 CAGCTCCAATGAAGAGAAGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATCATCAGTAGA
* * * * * * *
232683 CAGCTGC-ATGGCAGAGATGGATT-CATCGGTCTGGATCTTGTCAACGAGACCATC
1 CAGCTCCAAT-GAAGAGA-AGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATC
232737 CTCGGTGGAC
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
62 5 0.05
63 89 0.92
64 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (63 bp):
CAGCTCCAATGAAGAGAAGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATCATCAGTAGA
Left flanking sequence: Indices 232057 -- 232556
TGGTTGTCTTTGGTGTCGGACAATTGATCATCTCTCGAGGTAGGGGACAGCGACCCGTTGGAGTC
GGTGTTCTTCGCATAATCCTCAACGTTTAAGCCACCAGTGTCACTCGATTGGAGACTGTCAAGAG
TCTCTAAGGTTTGAGAGCTTGCAAAGTTCTCGGTGATTGTGGTATGGTGCCCACTGATGGAGGTT
GGAACCTCTCTGAAGTTTGACACCGTTGCGGATTTGTCAAGACGAGCAGAATCCAGAGTCAGCAA
CACGCCACGGTCGGTGGTCGGTGGTTCCTTGGAATCGTCGGAGTCTCCGGAAGTAATGGAGCCTT
CGGAGGTTGTTCTTGGAGAACCTCCCAGCGAATCAGTCTCGACCACCGAACCAGTTGAAGATGTC
AACAGAGGCTTTTCGTGGTCACTGAGACTTTCGTTGATGGAAAGCTCCAGTTCGGAGAAGGTGTT
GGATCCGTCAGTTTCAGCTGCGTCAACGAGTCCGTCAGTGGTTGG
Right flanking sequence: Indices 232737 -- 233236
CTCGGTGGACAGTTCCACTACGGTCATGGTACTGGATTCGGCAGTTGGAGTTGCTTCAACAAGAC
TGTCGGTGGTAGCCAGCTCCAGTCCCGAGGTGATACTGGATTCGTCAGTTTGGATTGCGTCAACG
ATACCATCATTCAGCTCCAGTTCCAAGGCGGTAATAGCTTCGTCAGTCTGAGTTGGGCCAACGAA
ACCGTCAGTAGTAAACAGCTCCAGTTCCGAGGTGTTACTGGACTGGTCCGTTTGAGCTGTGTCAA
CGAAACCATCATTGGTAGACAGCTCCACTGCAGAAACGGTTCCATCAGTTCGGGTCCCGCCAGCG
AGACCATCATCAGTAGACAGCTCCACTGCGGAGATAGTACTGGATCCATCACTCTTTGTTGCGTC
AACTAGACCATCATTAGTGGAAAGCTTCAGTTCCGACGTAGCACTGGATTCCTCAGTTTGAATCT
CATCGACAATACCATCATCGGTTGACAGCTCCAGTTCCAAGGTGG
Found at i:232748 original size:63 final size:63
Alignment explanation
Indices: 232594--232755 Score: 184
Period size: 63 Copynumber: 2.6 Consensus size: 63
232584 AGTTTGGGTT
* * *
232594 TCGTCAACGAGACCATCTTCAGTAGACAGCTCCACTGCAGAGACGGTTCCTTCAGTCTGGGTC
1 TCGTCAACGAGACCATCATCAGTAGACAGCTCCACTGCAGAGACGGTTCCATCAGTCTGGATC
* * * *
232657 TCGTCAACGAGACCATCATCATTAGACAGCTGCA-TGGCAGAGATGGATT-CATCGGTCTGGATC
1 TCGTCAACGAGACCATCATCAGTAGACAGCTCCACT-GCAGAGACGG-TTCCATCAGTCTGGATC
* * * * *
232720 TTGTCAACGAGACCATCCTCGGTGGACAGTTCCACT
1 TCGTCAACGAGACCATCATCAGTAGACAGCTCCACT
232756 ACGGTCATGG
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
62 1 0.01
63 78 0.95
64 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (63 bp):
TCGTCAACGAGACCATCATCAGTAGACAGCTCCACTGCAGAGACGGTTCCATCAGTCTGGATC
Left flanking sequence: Indices 232094 -- 232593
AGGTAGGGGACAGCGACCCGTTGGAGTCGGTGTTCTTCGCATAATCCTCAACGTTTAAGCCACCA
GTGTCACTCGATTGGAGACTGTCAAGAGTCTCTAAGGTTTGAGAGCTTGCAAAGTTCTCGGTGAT
TGTGGTATGGTGCCCACTGATGGAGGTTGGAACCTCTCTGAAGTTTGACACCGTTGCGGATTTGT
CAAGACGAGCAGAATCCAGAGTCAGCAACACGCCACGGTCGGTGGTCGGTGGTTCCTTGGAATCG
TCGGAGTCTCCGGAAGTAATGGAGCCTTCGGAGGTTGTTCTTGGAGAACCTCCCAGCGAATCAGT
CTCGACCACCGAACCAGTTGAAGATGTCAACAGAGGCTTTTCGTGGTCACTGAGACTTTCGTTGA
TGGAAAGCTCCAGTTCGGAGAAGGTGTTGGATCCGTCAGTTTCAGCTGCGTCAACGAGTCCGTCA
GTGGTTGGCAGCTCCAATGAAGAGAAAGATTCGTCAGTTTGGGTT
Right flanking sequence: Indices 232756 -- 233255
ACGGTCATGGTACTGGATTCGGCAGTTGGAGTTGCTTCAACAAGACTGTCGGTGGTAGCCAGCTC
CAGTCCCGAGGTGATACTGGATTCGTCAGTTTGGATTGCGTCAACGATACCATCATTCAGCTCCA
GTTCCAAGGCGGTAATAGCTTCGTCAGTCTGAGTTGGGCCAACGAAACCGTCAGTAGTAAACAGC
TCCAGTTCCGAGGTGTTACTGGACTGGTCCGTTTGAGCTGTGTCAACGAAACCATCATTGGTAGA
CAGCTCCACTGCAGAAACGGTTCCATCAGTTCGGGTCCCGCCAGCGAGACCATCATCAGTAGACA
GCTCCACTGCGGAGATAGTACTGGATCCATCACTCTTTGTTGCGTCAACTAGACCATCATTAGTG
GAAAGCTTCAGTTCCGACGTAGCACTGGATTCCTCAGTTTGAATCTCATCGACAATACCATCATC
GGTTGACAGCTCCAGTTCCAAGGTGGTATTGGATTCGTCACTCAG
Done.