Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold58
Parameters: 2 7 7 80 10 50 500
Length:  34493

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2418--2455
20
1.9
20
94
0
67
26
23
31
18
1.97
2933--2970
6
6.7
6
88
11
62
34
65
0
0
0.93
2935--2969
11
3.2
11
100
0
70
34
65
0
0
0.93
2933--2982
18
2.9
17
88
8
66
36
64
0
0
0.94
2935--2997
22
2.7
23
85
7
74
33
65
0
1
1.03
6003--6033
11
2.8
11
90
0
53
19
35
16
29
1.93
12076--12120
15
3.0
15
93
0
72
24
0
31
44
1.54
12330--12389
12
5.0
12
85
6
68
36
31
18
13
1.89
12338--12389
12
4.3
12
90
7
79
40
30
19
9
1.83
13668--13738
18
4.2
17
83
11
85
12
63
2
21
1.41
15842--15892
24
2.1
24
85
0
66
37
21
27
13
1.91
16049--16084
18
2.0
18
88
0
54
16
47
19
16
1.83
16531--16562
3
10.7
3
93
0
55
0
31
37
31
1.58
17264--17290
2
13.5
2
100
0
54
0
0
51
48
1.00
17377--17415
19
2.1
19
85
0
51
17
0
53
28
1.44
17418--17461
17
2.6
17
89
3
63
18
0
68
13
1.22
18430--18522
17
5.7
17
69
13
70
36
39
4
19
1.71
18447--18522
31
2.4
30
82
8
80
35
40
3
19
1.70
19379--19413
12
2.9
12
91
0
52
5
5
68
20
1.31
19375--19413
15
2.6
15
91
0
60
7
7
66
17
1.40
19463--19514
15
3.5
15
86
0
77
13
15
50
21
1.78
19638--19687
24
2.1
24
84
0
64
12
24
34
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19864--19924
15
4.1
15
87
8
88
24
47
21
6
1.74
19960--19993
9
3.8
9
96
0
50
14
61
0
23
1.33
20952--20998
25
1.9
24
95
4
85
25
0
63
10
1.26
20954--20999
12
3.7
13
75
18
53
26
0
65
8
1.21
21311--21350
20
2.0
21
95
5
73
15
7
67
10
1.41
21937--21979
11
3.8
12
87
9
63
13
9
37
39
1.78
21932--21979
11
4.3
11
84
5
60
12
8
37
41
1.73
21932--21979
23
2.1
23
88
3
71
12
8
37
41
1.73
22469--22536
27
2.5
25
86
9
73
1
27
4
66
1.20
22483--22536
26
2.1
25
89
6
81
0
29
3
66
1.09
22987--23026
8
4.9
8
87
6
62
15
12
35
37
1.85
22987--23044
9
6.8
9
88
5
68
20
12
31
36
1.89
22987--23044
25
2.3
26
87
3
82
20
12
31
36
1.89
23382--23427
8
5.8
8
81
0
56
21
13
10
54
1.69
25397--25442
21
2.2
20
88
7
74
15
45
34
4
1.66
28740--28795
9
6.0
9
87
4
76
30
25
33
10
1.90
29599--29670
20
3.6
20
79
3
74
30
41
9
18
1.82
32194--32259
3
20.7
3
74
22
55
34
0
65
0
0.93
32194--32257
7
8.9
7
81
11
51
35
0
64
0
0.94
32196--32264
10
6.3
10
76
17
66
36
0
63
0
0.94
32180--32250
35
2.0
35
86
8
99
35
4
60
0
1.16
32478--32503
10
2.6
10
100
0
52
0
7
53
38
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32653--32690
11
3.5
11
88
0
58
26
39
15
18
1.91
32680--32717
20
1.9
20
94
0
67
15
39
18
26
1.91
32681--32743
20
3.0
20
79
9
56
20
42
14
22
1.88

Tables:   1

The End!