Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold58
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 34493
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2443 original size:20 final size:20
Alignment explanation
Indices: 2418--2455 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2408 TGAACCAATG
2418 GTCTCACGATGGAAGGACCA
1 GTCTCACGATGGAAGGACCA
*
2438 GTCTCACGATGGATGGAC
1 GTCTCACGATGGAAGGAC
2456 TAGGCAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.24, G:0.32, T:0.18
Consensus pattern (20 bp):
GTCTCACGATGGAAGGACCA
Left flanking sequence: Indices 1918 -- 2417
ACGGTCACAGGTCGGATGTTTACATCGGGCGGACCTATCACAGTTCGTATATTCGGCTTCTCTGG
GCTTAACACATTTGCATCCGAAACAGCGTCAGCATGGTGTTAGACCAGTCGATAGCTCATCGATG
AGAGTTTGCTTCAATGAGTTCGAAGCCGGTCAGACAACGTGGACAGGGCTTTCACCCTCTGGTTA
GATATAGATAAAAAAAAATCCCCACACGCCTCAGGTCAAGTTGCCCGCCCCAGGTAGCCCGAGAT
GGCAACCGCAGAAATGCGCGGTGTCTTGTTGGACCCAACTTTTCGTCGCTAAACTTAGTAAACCG
AGTGGGTGCACTGATACGATTGGCTCAACAAGTTTAAGCGGACGAGGCGACTATGATGTAATTTT
CGGAGAAGAAGTGGAGAAAAGTGGAGACCGTGCTTTTTCGTACCGAACCGAGCGGTCCGGCGGTG
TTGCGTAGAGTGCCCCTGATGAAGGAAGGCTAACATGAACCAATG
Right flanking sequence: Indices 2456 -- 2955
TAGGCAACCAAACATTACCCGTGGGTGAACGGAGCGGAGACGACATTTGCGGGCGTACCAGGAGT
ACCTGACCCTCGGAGTTATGCTCATGTATCATCCCACCCACCAACGCTGTATATGCCGCTCGTCG
CAGGTCGAGTTCCGGCCAGAACCAATGGGAGTGGCCCATTGCCAACACCACGGAGTTAGGCTTTA
CAGCACCTTTCCATGACCTTTCCCTACCCAGACTGGTTCTGGTGGTGGTCACTATATGCACTCCA
CACACCTCAGAGCAAATAGGTCCCAACGTAGCCCGCAACCGGTGAGAATTCTCAGCCTCCAACCA
TACCACACCACTAAAACACACCCAAATAACCAGACAAACAGCTCAAATTGCTTGCCAGCCTCCTC
CAAGAGCACACACCCCCCCCACTACCGTATATACAGGATAGTTTTTCACCACCCAAAACCCCACC
ACCGCCCACCCGCCCCACGCCAACCCACACCCACACCACACCCAC
Found at i:2944 original size:6 final size:6
Alignment explanation
Indices: 2933--2970 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
2923 CCCCACGCCA
2933 ACCCAC ACCCAC A-CCAC ACCCAC A-CCAC ACCCAC ACCC
1 ACCCAC ACCCAC ACCCAC ACCCAC ACCCAC ACCCAC ACCC
2971 CAAACCACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCCAC
Left flanking sequence: Indices 2433 -- 2932
GACCAGTCTCACGATGGATGGACTAGGCAACCAAACATTACCCGTGGGTGAACGGAGCGGAGACG
ACATTTGCGGGCGTACCAGGAGTACCTGACCCTCGGAGTTATGCTCATGTATCATCCCACCCACC
AACGCTGTATATGCCGCTCGTCGCAGGTCGAGTTCCGGCCAGAACCAATGGGAGTGGCCCATTGC
CAACACCACGGAGTTAGGCTTTACAGCACCTTTCCATGACCTTTCCCTACCCAGACTGGTTCTGG
TGGTGGTCACTATATGCACTCCACACACCTCAGAGCAAATAGGTCCCAACGTAGCCCGCAACCGG
TGAGAATTCTCAGCCTCCAACCATACCACACCACTAAAACACACCCAAATAACCAGACAAACAGC
TCAAATTGCTTGCCAGCCTCCTCCAAGAGCACACACCCCCCCCACTACCGTATATACAGGATAGT
TTTTCACCACCCAAAACCCCACCACCGCCCACCCGCCCCACGCCA
Right flanking sequence: Indices 2971 -- 3470
CAAACCACACCCCACTCCACCACCCCATTCCCCCGCCCCATTCCCTCCAGACCTCCTCGCCCACC
CATCGCCTTCCTATTCCGGCAAAATGNCGCGTCGCGCGGCTCTTTTCCCCTGCACAAAATTTCAT
CCTCACTCCTCCTCACCCCAACCATGGAAGACCAGCCCAACCTGGCCCCCTTGGATGCCTTGTTT
GGCGACCGCACACGTCGTTTCACCGACTTTCTCCAACCCCCCGCCGGAGACGGGTTGGTCCGCGA
CATCGAGGCGATGCTCGCCAAGCGACAGGTCCGGTTGACGGTGCTGATGGACGACATCCGGGAGT
TTGACCGTGAGCTCTGGCAGGGGCTTCTTACCAAGCCCGCAGAGTTCCTTCCGCCCGCCGAGCGT
GCGCTCAAGGACGTGGTGATGAACGTTTACGACCCCAATGTGCACCAGGCTGACCCCCACCAGCA
GTTCTACCTCGGGTTCCGGGGCGCATTTGGCCACCACCAGTTGAC
Found at i:2951 original size:11 final size:11
Alignment explanation
Indices: 2935--2969 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
2925 CCACGCCAAC
2935 CCACACCCACA
1 CCACACCCACA
2946 CCACACCCACA
1 CCACACCCACA
2957 CCACACCCACA
1 CCACACCCACA
2968 CC
1 CC
2970 CCAAACCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00
Consensus pattern (11 bp):
CCACACCCACA
Left flanking sequence: Indices 2435 -- 2934
CCAGTCTCACGATGGATGGACTAGGCAACCAAACATTACCCGTGGGTGAACGGAGCGGAGACGAC
ATTTGCGGGCGTACCAGGAGTACCTGACCCTCGGAGTTATGCTCATGTATCATCCCACCCACCAA
CGCTGTATATGCCGCTCGTCGCAGGTCGAGTTCCGGCCAGAACCAATGGGAGTGGCCCATTGCCA
ACACCACGGAGTTAGGCTTTACAGCACCTTTCCATGACCTTTCCCTACCCAGACTGGTTCTGGTG
GTGGTCACTATATGCACTCCACACACCTCAGAGCAAATAGGTCCCAACGTAGCCCGCAACCGGTG
AGAATTCTCAGCCTCCAACCATACCACACCACTAAAACACACCCAAATAACCAGACAAACAGCTC
AAATTGCTTGCCAGCCTCCTCCAAGAGCACACACCCCCCCCACTACCGTATATACAGGATAGTTT
TTCACCACCCAAAACCCCACCACCGCCCACCCGCCCCACGCCAAC
Right flanking sequence: Indices 2970 -- 3469
CCAAACCACACCCCACTCCACCACCCCATTCCCCCGCCCCATTCCCTCCAGACCTCCTCGCCCAC
CCATCGCCTTCCTATTCCGGCAAAATGNCGCGTCGCGCGGCTCTTTTCCCCTGCACAAAATTTCA
TCCTCACTCCTCCTCACCCCAACCATGGAAGACCAGCCCAACCTGGCCCCCTTGGATGCCTTGTT
TGGCGACCGCACACGTCGTTTCACCGACTTTCTCCAACCCCCCGCCGGAGACGGGTTGGTCCGCG
ACATCGAGGCGATGCTCGCCAAGCGACAGGTCCGGTTGACGGTGCTGATGGACGACATCCGGGAG
TTTGACCGTGAGCTCTGGCAGGGGCTTCTTACCAAGCCCGCAGAGTTCCTTCCGCCCGCCGAGCG
TGCGCTCAAGGACGTGGTGATGAACGTTTACGACCCCAATGTGCACCAGGCTGACCCCCACCAGC
AGTTCTACCTCGGGTTCCGGGGCGCATTTGGCCACCACCAGTTGA
Found at i:2955 original size:17 final size:17
Alignment explanation
Indices: 2933--2982 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
2923 CCCCACGCCA
2933 ACCCACACC-CACACCAC
1 ACCCACACCACAC-CCAC
2950 ACCCACACCACACCCAC
1 ACCCACACCACACCCAC
*
2967 ACCCCAAACCACACCC
1 A-CCCACACCACACCC
2983 CACTCCACCA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 14 0.47
18 16 0.53
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (17 bp):
ACCCACACCACACCCAC
Left flanking sequence: Indices 2433 -- 2932
GACCAGTCTCACGATGGATGGACTAGGCAACCAAACATTACCCGTGGGTGAACGGAGCGGAGACG
ACATTTGCGGGCGTACCAGGAGTACCTGACCCTCGGAGTTATGCTCATGTATCATCCCACCCACC
AACGCTGTATATGCCGCTCGTCGCAGGTCGAGTTCCGGCCAGAACCAATGGGAGTGGCCCATTGC
CAACACCACGGAGTTAGGCTTTACAGCACCTTTCCATGACCTTTCCCTACCCAGACTGGTTCTGG
TGGTGGTCACTATATGCACTCCACACACCTCAGAGCAAATAGGTCCCAACGTAGCCCGCAACCGG
TGAGAATTCTCAGCCTCCAACCATACCACACCACTAAAACACACCCAAATAACCAGACAAACAGC
TCAAATTGCTTGCCAGCCTCCTCCAAGAGCACACACCCCCCCCACTACCGTATATACAGGATAGT
TTTTCACCACCCAAAACCCCACCACCGCCCACCCGCCCCACGCCA
Right flanking sequence: Indices 2983 -- 3482
CACTCCACCACCCCATTCCCCCGCCCCATTCCCTCCAGACCTCCTCGCCCACCCATCGCCTTCCT
ATTCCGGCAAAATGNCGCGTCGCGCGGCTCTTTTCCCCTGCACAAAATTTCATCCTCACTCCTCC
TCACCCCAACCATGGAAGACCAGCCCAACCTGGCCCCCTTGGATGCCTTGTTTGGCGACCGCACA
CGTCGTTTCACCGACTTTCTCCAACCCCCCGCCGGAGACGGGTTGGTCCGCGACATCGAGGCGAT
GCTCGCCAAGCGACAGGTCCGGTTGACGGTGCTGATGGACGACATCCGGGAGTTTGACCGTGAGC
TCTGGCAGGGGCTTCTTACCAAGCCCGCAGAGTTCCTTCCGCCCGCCGAGCGTGCGCTCAAGGAC
GTGGTGATGAACGTTTACGACCCCAATGTGCACCAGGCTGACCCCCACCAGCAGTTCTACCTCGG
GTTCCGGGGCGCATTTGGCCACCACCAGTTGACTCCCCGCACCAT
Found at i:2994 original size:25 final size:23
Alignment explanation
Indices: 2935--2997 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
2925 CCACGCCAAC
* *
2935 CCACACCCACACCAC-ACCCACA
1 CCACACCCACACCCCAAACCACA
2957 CCACACCCACACCCCAAACCACA
1 CCACACCCACACCCCAAACCACA
*
2980 CCCCACTCCACCACCCCA
1 CCACAC-CCA-CACCCCA
2998 TTCCCCCGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.40
23 11 0.31
24 3 0.09
25 7 0.20
ACGTcount: A:0.33, C:0.65, G:0.00, T:0.02
Consensus pattern (23 bp):
CCACACCCACACCCCAAACCACA
Left flanking sequence: Indices 2435 -- 2934
CCAGTCTCACGATGGATGGACTAGGCAACCAAACATTACCCGTGGGTGAACGGAGCGGAGACGAC
ATTTGCGGGCGTACCAGGAGTACCTGACCCTCGGAGTTATGCTCATGTATCATCCCACCCACCAA
CGCTGTATATGCCGCTCGTCGCAGGTCGAGTTCCGGCCAGAACCAATGGGAGTGGCCCATTGCCA
ACACCACGGAGTTAGGCTTTACAGCACCTTTCCATGACCTTTCCCTACCCAGACTGGTTCTGGTG
GTGGTCACTATATGCACTCCACACACCTCAGAGCAAATAGGTCCCAACGTAGCCCGCAACCGGTG
AGAATTCTCAGCCTCCAACCATACCACACCACTAAAACACACCCAAATAACCAGACAAACAGCTC
AAATTGCTTGCCAGCCTCCTCCAAGAGCACACACCCCCCCCACTACCGTATATACAGGATAGTTT
TTCACCACCCAAAACCCCACCACCGCCCACCCGCCCCACGCCAAC
Right flanking sequence: Indices 2998 -- 3497
TTCCCCCGCCCCATTCCCTCCAGACCTCCTCGCCCACCCATCGCCTTCCTATTCCGGCAAAATGN
CGCGTCGCGCGGCTCTTTTCCCCTGCACAAAATTTCATCCTCACTCCTCCTCACCCCAACCATGG
AAGACCAGCCCAACCTGGCCCCCTTGGATGCCTTGTTTGGCGACCGCACACGTCGTTTCACCGAC
TTTCTCCAACCCCCCGCCGGAGACGGGTTGGTCCGCGACATCGAGGCGATGCTCGCCAAGCGACA
GGTCCGGTTGACGGTGCTGATGGACGACATCCGGGAGTTTGACCGTGAGCTCTGGCAGGGGCTTC
TTACCAAGCCCGCAGAGTTCCTTCCGCCCGCCGAGCGTGCGCTCAAGGACGTGGTGATGAACGTT
TACGACCCCAATGTGCACCAGGCTGACCCCCACCAGCAGTTCTACCTCGGGTTCCGGGGCGCATT
TGGCCACCACCAGTTGACTCCCCGCACCATTGACGCCAGTTTCTT
Found at i:6023 original size:11 final size:11
Alignment explanation
Indices: 6003--6033 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
5993 CCAGTCTTTT
6003 GACACGTCTTC
1 GACACGTCTTC
*
6014 GACACTTCTTC
1 GACACGTCTTC
6025 GACACGTCT
1 GACACGTCT
6034 CCACCACCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.29
Consensus pattern (11 bp):
GACACGTCTTC
Left flanking sequence: Indices 5503 -- 6002
GACAAGTTGGTGCTGGAGAACCGGGTGATGGTGTCCGACGGGTTGGTGTACAGAATCTAGGTTGT
ATTATATGTATTAATGAAAGAAATGGACCAAGGACGAGGGGGAAGGGTGGACGGTGGTGGACGGT
GGATGAGACACAGGTCGATCAGCTAGGTGAGATGAATTGCAACTAAGCTGTTTGAGGAGAGACTT
TGCATTTTAAGTGTGGTTCACTGAGACGACTCAATACCGTGATGGGGTTGCGATGGGGACGATTA
CCATGAAAAGAGGCAGGTTCCACACTCTTTATACTAAAACAAACACACTGAGAGAACCAGCTAAG
CCATTGACCCCATTTTGACTCTCTTCTCTTACTTCTGATTCCTAAAGCGGTTCTATACATCCTGC
ACAGAACAAAACAGGAAGACACCTCATTCCTCGACTCTACGCTTTATCAACCACTCTAAACCTCT
TGAACATTGTCTCTTTCCCCTCACTCTCGTCCCAACCAGTCTTTT
Right flanking sequence: Indices 6034 -- 6533
CCACCACCACTTTTCACACCCAAAACCCAGTGGTCCTAACCAAACCCATCTCATCTCCATGTCCC
TGGTCGCCCCCGAGGACGAGTTGTTGCTCCACAACCACACGACGCTCCCCAAAAACGTCAAGCGG
TACTGGAAGAAACGCTACCTGCTCTTTTCCCGCTTCGATGAGGGCGTCTACATGCTGCTGGAGCT
CTGGTACTCGGTGACACCAGAGGCGGTGGCCAAGTTCATTGCCAGACTCGTGTACGAAGTGATGT
ATCCCGAGTCCGCGGCCGCGAACGACGAGGTCGTGCGGGCACCAGCCTCTGTGATCGATGTGTGC
TGTGGGGGAGGCGGCAACACCATCCAGTTTGCCCGCTACTTTGACCGGGTGACGGCCGTAGACAT
CAACTCCGTCAACGTCACGTGTACTACCCATAACTGTGCTATATACGGGGTTGGAGACCGGGTCC
AGAGCGTGGTGGGCGACTGGAATGAGCTCAGCGACTCGATCGGCT
Found at i:12096 original size:15 final size:15
Alignment explanation
Indices: 12076--12120 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
12066 GAGTCAAGAC
12076 AGGTGTTTTATAGTG
1 AGGTGTTTTATAGTG
12091 AGGTGTTTTATAGTG
1 AGGTGTTTTATAGTG
* *
12106 AAGTGTATTATAGTG
1 AGGTGTTTTATAGTG
12121 TTGTGACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.44
Consensus pattern (15 bp):
AGGTGTTTTATAGTG
Left flanking sequence: Indices 11576 -- 12075
TACATTCGCACCGTCCGGACGAACGAGCAGGCTCGCATTGCCCGCGAAAAACAGGCGTTGGCCCC
GAAGGCCGTTGGCAAGCACACGGTTTTCGTGGACTCGGCCGACGCTGCCCGCGAGTTCGACCCCG
CCCAGCATTTTAACACCGACGAGTCGTTGATCAGCCGTCGCGAGAACCGGTTGCGGATGGACCAG
TTGCAGCTGGACAAGCCGCTTGCCAAGCTGCTTGACGCAGACACCCGGGCTCAGTTGCAGAAGGA
CCGGATGCGCCAGTTGCAGCAGTTGAAGCAGCGGGTGGAGCGGGAGAAGGAGCTCCGCGAGGTCG
AGTTGCGCATGGAGTACGCCAACGAGGTGATGAAGAAGGGCGCGAAGAAGAAAGTGTACCACGCC
GACGGCACCACGCTGTTCAAATGGGCCAAGGCACGGAAACGGTAGGGAATGGAATTTATAGAGTA
ATGAATGTTATAATGGAGCAAGTGGGTTGGTTGAAGAGTCAAGAC
Right flanking sequence: Indices 12121 -- 12620
TTGTGACCTAGCAATTGTGATTAGACCGTAGAGAGTAAGGCGAAAACCGTAGGAGGAAAGGTTAC
TGAAAAGGGCTATCAACATCATCAAACTAATTCTTTGTCACTATTGCTACCTTTCAACAAACATC
AATTGCCACCTATCGACACACTTGACTCAATTGCGGAGGTTGGGCTGTCTATGAAGTTCAGCAAT
TGCAGAAAATAAGACAGTCTCTAAGCGCAGTCTCAAAGCCAGTCACAAAGCCAGTCAAAAGCCAG
TCACAAAGCACCTTACCAACTCTACAACGTCTCCAAAATGCTCAATGTATTCCGAAGTGAATGCT
ATCTATGTATACACTCTCAACAACCCGCCTCAGTCACCCGTCGTTCAAAGACTTCTCCAAGTATT
CCACAAACATCGGGGTGATCCGGGCAGGGTCCACCGTCCGCATGCGATTGAGCCCCACGTACGTC
CGTCGGATCCGCTGCAACTGTGCTGCCAGCGGCACCTGGGCCGGC
Found at i:12348 original size:13 final size:12
Alignment explanation
Indices: 12330--12389 Score: 68
Period size: 12 Copynumber: 5.0 Consensus size: 12
12320 GAAAATAAGA
*
12330 CAGTCTCTAAGC
1 CAGTCTCAAAGC
12342 GCAGTCTCAAAGC
1 -CAGTCTCAAAGC
*
12355 CAGTCACAAAGC
1 CAGTCTCAAAGC
*
12367 CAGTC-AAAAGC
1 CAGTCTCAAAGC
*
12378 CAGTCACAAAGC
1 CAGTCTCAAAGC
12390 ACCTTACCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
11 10 0.24
12 21 0.50
13 11 0.26
ACGTcount: A:0.37, C:0.32, G:0.18, T:0.13
Consensus pattern (12 bp):
CAGTCTCAAAGC
Left flanking sequence: Indices 11830 -- 12329
GAAGGACCGGATGCGCCAGTTGCAGCAGTTGAAGCAGCGGGTGGAGCGGGAGAAGGAGCTCCGCG
AGGTCGAGTTGCGCATGGAGTACGCCAACGAGGTGATGAAGAAGGGCGCGAAGAAGAAAGTGTAC
CACGCCGACGGCACCACGCTGTTCAAATGGGCCAAGGCACGGAAACGGTAGGGAATGGAATTTAT
AGAGTAATGAATGTTATAATGGAGCAAGTGGGTTGGTTGAAGAGTCAAGACAGGTGTTTTATAGT
GAGGTGTTTTATAGTGAAGTGTATTATAGTGTTGTGACCTAGCAATTGTGATTAGACCGTAGAGA
GTAAGGCGAAAACCGTAGGAGGAAAGGTTACTGAAAAGGGCTATCAACATCATCAAACTAATTCT
TTGTCACTATTGCTACCTTTCAACAAACATCAATTGCCACCTATCGACACACTTGACTCAATTGC
GGAGGTTGGGCTGTCTATGAAGTTCAGCAATTGCAGAAAATAAGA
Right flanking sequence: Indices 12390 -- 12889
ACCTTACCAACTCTACAACGTCTCCAAAATGCTCAATGTATTCCGAAGTGAATGCTATCTATGTA
TACACTCTCAACAACCCGCCTCAGTCACCCGTCGTTCAAAGACTTCTCCAAGTATTCCACAAACA
TCGGGGTGATCCGGGCAGGGTCCACCGTCCGCATGCGATTGAGCCCCACGTACGTCCGTCGGATC
CGCTGCAACTGTGCTGCCAGCGGCACCTGGGCCGGCAAATCCATTTTGAGGTCGCCAATCACCAC
CCGGCCTCCAAAATCCTTCTGTTTGAGCACCTCGGTCACCACCATCGACGTCTGGCGGTCCAACT
CCTGCACGAAGTCGATCGACCCGGTGGCCTTGACCGCTGTAGATGCGTTGGGAGTGGGTGGCTTC
TTCAACACGAGCGCCAGCCACATCTCGTCCACGGGCAACTCGTCCCCTTCGGGAGCAACCACCGA
GAACAACGGCAGGTCCCACCGCTGGTCGCCACGCGGCTCCTCGTA
Found at i:12378 original size:11 final size:12
Alignment explanation
Indices: 12338--12389 Score: 79
Period size: 12 Copynumber: 4.3 Consensus size: 12
12328 GACAGTCTCT
*
12338 AAGCGCAGTCTCA
1 AAGC-CAGTCACA
12351 AAGCCAGTCACA
1 AAGCCAGTCACA
12363 AAGCCAGTCA-A
1 AAGCCAGTCACA
12374 AAGCCAGTCACA
1 AAGCCAGTCACA
12386 AAGC
1 AAGC
12390 ACCTTACCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
11 11 0.30
12 22 0.59
13 4 0.11
ACGTcount: A:0.40, C:0.31, G:0.19, T:0.10
Consensus pattern (12 bp):
AAGCCAGTCACA
Left flanking sequence: Indices 11838 -- 12337
GGATGCGCCAGTTGCAGCAGTTGAAGCAGCGGGTGGAGCGGGAGAAGGAGCTCCGCGAGGTCGAG
TTGCGCATGGAGTACGCCAACGAGGTGATGAAGAAGGGCGCGAAGAAGAAAGTGTACCACGCCGA
CGGCACCACGCTGTTCAAATGGGCCAAGGCACGGAAACGGTAGGGAATGGAATTTATAGAGTAAT
GAATGTTATAATGGAGCAAGTGGGTTGGTTGAAGAGTCAAGACAGGTGTTTTATAGTGAGGTGTT
TTATAGTGAAGTGTATTATAGTGTTGTGACCTAGCAATTGTGATTAGACCGTAGAGAGTAAGGCG
AAAACCGTAGGAGGAAAGGTTACTGAAAAGGGCTATCAACATCATCAAACTAATTCTTTGTCACT
ATTGCTACCTTTCAACAAACATCAATTGCCACCTATCGACACACTTGACTCAATTGCGGAGGTTG
GGCTGTCTATGAAGTTCAGCAATTGCAGAAAATAAGACAGTCTCT
Right flanking sequence: Indices 12390 -- 12889
ACCTTACCAACTCTACAACGTCTCCAAAATGCTCAATGTATTCCGAAGTGAATGCTATCTATGTA
TACACTCTCAACAACCCGCCTCAGTCACCCGTCGTTCAAAGACTTCTCCAAGTATTCCACAAACA
TCGGGGTGATCCGGGCAGGGTCCACCGTCCGCATGCGATTGAGCCCCACGTACGTCCGTCGGATC
CGCTGCAACTGTGCTGCCAGCGGCACCTGGGCCGGCAAATCCATTTTGAGGTCGCCAATCACCAC
CCGGCCTCCAAAATCCTTCTGTTTGAGCACCTCGGTCACCACCATCGACGTCTGGCGGTCCAACT
CCTGCACGAAGTCGATCGACCCGGTGGCCTTGACCGCTGTAGATGCGTTGGGAGTGGGTGGCTTC
TTCAACACGAGCGCCAGCCACATCTCGTCCACGGGCAACTCGTCCCCTTCGGGAGCAACCACCGA
GAACAACGGCAGGTCCCACCGCTGGTCGCCACGCGGCTCCTCGTA
Found at i:13709 original size:18 final size:17
Alignment explanation
Indices: 13668--13738 Score: 85
Period size: 18 Copynumber: 4.2 Consensus size: 17
13658 TTCCCGCCAC
13668 CCTCTACCCCACCT-C-
1 CCTCTACCCCACCTCCT
*
13683 CCACTACCCCACCTCCAT
1 CCTCTACCCCACCTCC-T
13701 CCTCTACCCCACCTCCT
1 CCTCTACCCCACCTCCT
*
13718 CCGTCTACCCCGCCT-CT
1 CC-TCTACCCCACCTCCT
13735 CCTC
1 CCTC
13739 CCGCGTCTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
15 13 0.27
16 3 0.06
17 7 0.14
18 26 0.53
ACGTcount: A:0.13, C:0.63, G:0.03, T:0.21
Consensus pattern (17 bp):
CCTCTACCCCACCTCCT
Left flanking sequence: Indices 13168 -- 13667
CGTCGCTGTGGACGACTACGCTCATGTTGTGCCCGGGCAGCCCGGTCTGTTTGGCTTCGGCGATC
TTGGCTTGCAACGCCGCCACGAGATCTGTTACGTACCGCAGTTTCCCCAGCAGGGGGAGCCCCGT
GAAGGTGATGAGAGGCATGGTGAAAATTGATGCACGGGTGTAACTATATGAGGGAAGTGGATGAA
GTGGTGTAGGTAGCAGGTGGGGTGGGTAACGGGTGGTGTAGGTGGTAGCTGGCGGGATGAAAAGG
GTCTACGGGGGTCTGTGGCTCTAAAGCCGTAGTGGTGATTTGGGAGATTGCGTATTAGTGCCTAA
ATCGGCCTGTCGTTCCAGTCAACTGTGTTCCCTGTAGTCACTAAGATTTCACTAGACCTTGTGCC
CACTAGCTTCTATAGTTAATCTAAGTAGCCTCTTGCTCCCTTGTGCCAACACTACATCCACTCTC
AACTTCCCTTTTTACACATCCCATCACCATTTCAATTCCCGCCAC
Right flanking sequence: Indices 13739 -- 14238
CCGCGTCTCTCGCCTCCCAATCCCTGCATCAACCGTTTTCTGTCACCTCGTCCTCCACCTCCTTT
ATCACTCTCTTTTCGTGCGGCTTTACCCATGAGCTTTCTCCCCAGACGGGTGTTCCCCAACTATA
ACCTCCCGCTCGCCAACTTCAAGGGCCACCATGCCAAGGCCCTCACCCGCTTGGGCCACCTAGCC
CCCCAGATCGACATCGTGCTCGAGATCCGCGATCTGCGAGCTCCCCTCCTGACCAAGAACGCCCT
CTTTGACCGGGTGCTTGCTCACAAGGACCGGCTTGTGGTGTACACGAAAAAAGACTTGGTCTCAG
GGCTCCGAAGTAAGGCATGGACCCAGGACGACCACCTCTTCATTGACGCCCGGTCGCGGGCAGAC
ACCAGACGGATCATCAACCGGCTCACCGAGCGGTACGACGCGATGGATCCGCCCCCTCCGCTTGG
TCTCCGGGCCCTCATTGTGGGTATGCCCAATGTCGGTAAGCTGAC
Found at i:15869 original size:24 final size:24
Alignment explanation
Indices: 15842--15892 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
15832 AGGTTTTGAC
* * *
15842 ACAGATTCTGAAACAGGGTCTGAA
1 ACAGAGTCCGAAACAGGGTCCGAA
*
15866 ACAGGGTCCGAAACAGGGTCCGAA
1 ACAGAGTCCGAAACAGGGTCCGAA
15890 ACA
1 ACA
15893 CTACCTGAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.27, T:0.14
Consensus pattern (24 bp):
ACAGAGTCCGAAACAGGGTCCGAA
Left flanking sequence: Indices 15342 -- 15841
ACTCTAACTAACACGCTGCCCGCTACTCCCCAATCAACGCATCAATATCCACGAACGCGCCAAAC
TCCGCCTCCTTCTTCACCTGCGGCTGCTCCAGCTTCGCCGTCTTCTCCACCGCAGGCTTCCACTT
CACCCCGAGCTCAGTCGCCGCCCGCTGGGCCTTGCGAAGATCGGGCTTCACAAGCGGGCCCTCGT
TCAGCGTGTTCACCGCCAAGATGTTCCCCAAATTGAACAAGTTCGACTTGGCGGGGTCCACAAGG
TTCTTGGCCACGAAGTCGGGCTCCGCGAGGAACTCCAGCAACAGCGGCGCCCCCAACAGCCGGGC
GATGATGTGCTTGAGCCCGTGCGAGTACTTGAACAACAGCGGCAGCCCCGCGGTGAGCCGCGAGT
CCACCGAGGGGCCCAGGACGTGCTCCACAGAGACCGGCTCCGTGTGCGCAAGCGCGAGTTTCGGG
TTGGAAATGACGGGTAGCGAATATGGGTCTGACAAAGGTTTTGAC
Right flanking sequence: Indices 15893 -- 16392
CTACCTGAGACCCGATCTCTCCCATCCTCCTCCTCCCTAAGCGTGTGCCCCTCGATAAACGCCTC
CATCGCCGCGAGCGCCCCCTCCTGGGGGAACTTCAGCGGCGCCGGCGCCGGCTGCGAGTAGTCGA
CCACGTCCTCCTCCAACTTGACGGGGCCCGAGTCAGCCTCGTCCCCCGAGTCAAACTCGTCCTCC
TCCTCCTCCTTCACTCCCCCGCGCTTCGGAGTGAGGTAGGGGAACTTGCCAAACTTTTCGTCCTC
CTTGAGCGCCAAGTTCACCATTATGAGCCCGGGCCGCCCCGCCCCCACGGCGAGCTCGACGGGGA
ACAACGCCGCCACGGCCACGGGGGCGCCGTCCTTGGGCACGTACCGCACCACCGCCACGCGGCCG
CTGGCGTGGAGCGCCCGCACAAACAGCGCGTACGCCCTCGCCAGCCCCCGGGGCACCACGTAGTT
CAGCTCCCCGGTGAGGTACGGCCAGGGCACCCCGGGGGCGAACCC
Found at i:16081 original size:18 final size:18
Alignment explanation
Indices: 16049--16084 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16039 CTTGACGGGG
**
16049 CCCGAGTCAGCCTCGTCC
1 CCCGAGTCAAACTCGTCC
16067 CCCGAGTCAAACTCGTCC
1 CCCGAGTCAAACTCGTCC
16085 TCCTCCTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.47, G:0.19, T:0.17
Consensus pattern (18 bp):
CCCGAGTCAAACTCGTCC
Left flanking sequence: Indices 15549 -- 16048
CCGCCAAGATGTTCCCCAAATTGAACAAGTTCGACTTGGCGGGGTCCACAAGGTTCTTGGCCACG
AAGTCGGGCTCCGCGAGGAACTCCAGCAACAGCGGCGCCCCCAACAGCCGGGCGATGATGTGCTT
GAGCCCGTGCGAGTACTTGAACAACAGCGGCAGCCCCGCGGTGAGCCGCGAGTCCACCGAGGGGC
CCAGGACGTGCTCCACAGAGACCGGCTCCGTGTGCGCAAGCGCGAGTTTCGGGTTGGAAATGACG
GGTAGCGAATATGGGTCTGACAAAGGTTTTGACACAGATTCTGAAACAGGGTCTGAAACAGGGTC
CGAAACAGGGTCCGAAACACTACCTGAGACCCGATCTCTCCCATCCTCCTCCTCCCTAAGCGTGT
GCCCCTCGATAAACGCCTCCATCGCCGCGAGCGCCCCCTCCTGGGGGAACTTCAGCGGCGCCGGC
GCCGGCTGCGAGTAGTCGACCACGTCCTCCTCCAACTTGACGGGG
Right flanking sequence: Indices 16085 -- 16584
TCCTCCTCCTCCTTCACTCCCCCGCGCTTCGGAGTGAGGTAGGGGAACTTGCCAAACTTTTCGTC
CTCCTTGAGCGCCAAGTTCACCATTATGAGCCCGGGCCGCCCCGCCCCCACGGCGAGCTCGACGG
GGAACAACGCCGCCACGGCCACGGGGGCGCCGTCCTTGGGCACGTACCGCACCACCGCCACGCGG
CCGCTGGCGTGGAGCGCCCGCACAAACAGCGCGTACGCCCTCGCCAGCCCCCGGGGCACCACGTA
GTTCAGCTCCCCGGTGAGGTACGGCCAGGGCACCCCGGGGGCGAACCCCAACACGTCCATCCCCG
CGGCGGTGGCGAGGGTTGCGGCCGCGGCCAAGTCGTCCAGCACCACCACCACGTCGCGTTTGGAG
TACTTGAACGCCAGCGTGCGCTCGACGGCCTCCACGGGGATCTTGCGGAACACGCGGTCGTCGTC
GTCGTCGGCGTCGTCGTCGTCGTACTCCTTGGTGTAGCTCAGGGT
Found at i:16539 original size:3 final size:3
Alignment explanation
Indices: 16531--16562 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
16521 GGAACACGCG
*
16531 GTC GTC GTC GTC GTC GGC GTC GTC GTC GTC GT
1 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GT
16563 ACTCCTTGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.31, G:0.38, T:0.31
Consensus pattern (3 bp):
GTC
Left flanking sequence: Indices 16031 -- 16530
TCCTCCAACTTGACGGGGCCCGAGTCAGCCTCGTCCCCCGAGTCAAACTCGTCCTCCTCCTCCTC
CTTCACTCCCCCGCGCTTCGGAGTGAGGTAGGGGAACTTGCCAAACTTTTCGTCCTCCTTGAGCG
CCAAGTTCACCATTATGAGCCCGGGCCGCCCCGCCCCCACGGCGAGCTCGACGGGGAACAACGCC
GCCACGGCCACGGGGGCGCCGTCCTTGGGCACGTACCGCACCACCGCCACGCGGCCGCTGGCGTG
GAGCGCCCGCACAAACAGCGCGTACGCCCTCGCCAGCCCCCGGGGCACCACGTAGTTCAGCTCCC
CGGTGAGGTACGGCCAGGGCACCCCGGGGGCGAACCCCAACACGTCCATCCCCGCGGCGGTGGCG
AGGGTTGCGGCCGCGGCCAAGTCGTCCAGCACCACCACCACGTCGCGTTTGGAGTACTTGAACGC
CAGCGTGCGCTCGACGGCCTCCACGGGGATCTTGCGGAACACGCG
Right flanking sequence: Indices 16563 -- 17062
ACTCCTTGGTGTAGCTCAGGGTGTGCCGCTTCACCTGCACCGGGTGCGCCCCCGCCACGGAGTAG
TCGGACCCCGGGGGCGCCTTCTCGACCCGCGCCGCGGGGTACACCGCCACCGGCAAGTTGACCAT
CCCCGCCCCGCTGGCCTCGGCGCCCCCGGGGCCCTCGCCCTCGGCGTCGCGCCCGATCCGGAGCA
CGCACTCCTTCTTGACGGGGTTGACCCGGCGCACGGGGGCGTGGCGCGCCACCGCCTGCCCCGGG
TGCTCGACCACGGCGGCGCCCCACGCGACCACCGCAGGCTGCCACGGCCCCAGCGCAGCGACCCC
GACCACGGTGACCCCGACCCCGTCAAAGCTGTCGGCGTAGTCGAGCGCCGCGGGGTCCCACCGGG
CGTCGCTCGAGATCACCACGAGCTCGCGGCCAAACTTGAGGTGGGGCTTGAGGTCGAAGTTGGCG
CGCGCCGCGCGCAACCCGGGGGCGAGCCCCGGCGCGGGGGGCGGG
Found at i:17271 original size:2 final size:2
Alignment explanation
Indices: 17264--17290 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
17254 GGAAGCCATG
17264 GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT G
17291 GATGAGGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Left flanking sequence: Indices 16764 -- 17263
CCTTCTTGACGGGGTTGACCCGGCGCACGGGGGCGTGGCGCGCCACCGCCTGCCCCGGGTGCTCG
ACCACGGCGGCGCCCCACGCGACCACCGCAGGCTGCCACGGCCCCAGCGCAGCGACCCCGACCAC
GGTGACCCCGACCCCGTCAAAGCTGTCGGCGTAGTCGAGCGCCGCGGGGTCCCACCGGGCGTCGC
TCGAGATCACCACGAGCTCGCGGCCAAACTTGAGGTGGGGCTTGAGGTCGAAGTTGGCGCGCGCC
GCGCGCAACCCGGGGGCGAGCCCCGGCGCGGGGGGCGGGGCGGTGCTCACCGCGGCGTGCCACTG
GCGGAGGGTGTCGTAGGTGAAGGGGCCGTCGACAAAGAGGGTGTCGCCCGCGAGCACGAGCGCGA
GGCGGTCGAGCTTGCGCTTAGTGAGGAGCTGGGCGGCGCACTGCTCCCAGAGGTAGTCGGCTGCC
AGGACGTCGTCCAAGAGGAACACCGTCCACGCCTTGGAAGCCATG
Right flanking sequence: Indices 17291 -- 17790
GATGAGGTGGAGGGTGATGGGAGTGTGTAATGGGTGGTGTGCGTGGAGCGCGTGCGTGGTGCGCG
TCAGGTGTGGGTGGAAGATTGGGTGGGAGTGAGTTTGAGTGGTGTGAGTGAGAGTGAGTGAAAGT
GAGGGAGGGAGGGAGTGAGGTGGGGGAGGGTGTGAGGTGGGAAGGGAAGGAGGGTGAAAGAATGT
GTAGGCGTGGAGATGGTGGATCACGTGGGTAGAGTGTGGAGAGGTGAGAAAGGGTGTAGGGCTTA
TGGAGTGGTTACTGTGAGATGGGGATTATTGGGCTGGATGGTGTGAATGTAAGAGGGTGGTATTG
GATGAGGTAGAGCCGGGAGAGAACAAGCGTGTACCCAGAGACTACAGCAGAACCATGATTGGATA
GAAAGAGCTACCGTGAACCAATTGATGTGTAGGTGGGAACCGATGCCAACCTCTCAGCTCACGTA
GGTGAGGACGTGACACACTACTATCGCAACCAAAATTTCTCCATA
Found at i:17413 original size:19 final size:19
Alignment explanation
Indices: 17377--17415 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
17367 TGGAAGATTG
**
17377 GGTGGGAGTGAGTTTGAGT
1 GGTGGGAGTGAGAGTGAGT
*
17396 GGTGTGAGTGAGAGTGAGT
1 GGTGGGAGTGAGAGTGAGT
17415 G
1 G
17416 AAAGTGAGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.54, T:0.28
Consensus pattern (19 bp):
GGTGGGAGTGAGAGTGAGT
Left flanking sequence: Indices 16877 -- 17376
GCAGCGACCCCGACCACGGTGACCCCGACCCCGTCAAAGCTGTCGGCGTAGTCGAGCGCCGCGGG
GTCCCACCGGGCGTCGCTCGAGATCACCACGAGCTCGCGGCCAAACTTGAGGTGGGGCTTGAGGT
CGAAGTTGGCGCGCGCCGCGCGCAACCCGGGGGCGAGCCCCGGCGCGGGGGGCGGGGCGGTGCTC
ACCGCGGCGTGCCACTGGCGGAGGGTGTCGTAGGTGAAGGGGCCGTCGACAAAGAGGGTGTCGCC
CGCGAGCACGAGCGCGAGGCGGTCGAGCTTGCGCTTAGTGAGGAGCTGGGCGGCGCACTGCTCCC
AGAGGTAGTCGGCTGCCAGGACGTCGTCCAAGAGGAACACCGTCCACGCCTTGGAAGCCATGGTG
TGTGTGTGTGTGTGTGTGTGTGTGGATGAGGTGGAGGGTGATGGGAGTGTGTAATGGGTGGTGTG
CGTGGAGCGCGTGCGTGGTGCGCGTCAGGTGTGGGTGGAAGATTG
Right flanking sequence: Indices 17416 -- 17915
AAAGTGAGGGAGGGAGGGAGTGAGGTGGGGGAGGGTGTGAGGTGGGAAGGGAAGGAGGGTGAAAG
AATGTGTAGGCGTGGAGATGGTGGATCACGTGGGTAGAGTGTGGAGAGGTGAGAAAGGGTGTAGG
GCTTATGGAGTGGTTACTGTGAGATGGGGATTATTGGGCTGGATGGTGTGAATGTAAGAGGGTGG
TATTGGATGAGGTAGAGCCGGGAGAGAACAAGCGTGTACCCAGAGACTACAGCAGAACCATGATT
GGATAGAAAGAGCTACCGTGAACCAATTGATGTGTAGGTGGGAACCGATGCCAACCTCTCAGCTC
ACGTAGGTGAGGACGTGACACACTACTATCGCAACCAAAATTTCTCCATAGAAACTGGAGCAAAA
CTTCGATGCTCTCTATCTTATTTATCTCTTCTCTTCTCGTTCGTTTGTTTTCTGTTTCTCCTGGC
ATATGTTGAACTTGTGCCATCCGTACGTTCTCCAACCACCTAACT
Found at i:17449 original size:17 final size:17
Alignment explanation
Indices: 17418--17461 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
17408 AGTGAGTGAA
*
17418 AGTGAGG-GAGGGAGGG
1 AGTGAGGTGGGGGAGGG
17434 AGTGAGGTGGGGGAGGG
1 AGTGAGGTGGGGGAGGG
*
17451 TGTGAGGTGGG
1 AGTGAGGTGGG
17462 AAGGGAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.18, C:0.00, G:0.68, T:0.14
Consensus pattern (17 bp):
AGTGAGGTGGGGGAGGG
Left flanking sequence: Indices 16918 -- 17417
GTCGGCGTAGTCGAGCGCCGCGGGGTCCCACCGGGCGTCGCTCGAGATCACCACGAGCTCGCGGC
CAAACTTGAGGTGGGGCTTGAGGTCGAAGTTGGCGCGCGCCGCGCGCAACCCGGGGGCGAGCCCC
GGCGCGGGGGGCGGGGCGGTGCTCACCGCGGCGTGCCACTGGCGGAGGGTGTCGTAGGTGAAGGG
GCCGTCGACAAAGAGGGTGTCGCCCGCGAGCACGAGCGCGAGGCGGTCGAGCTTGCGCTTAGTGA
GGAGCTGGGCGGCGCACTGCTCCCAGAGGTAGTCGGCTGCCAGGACGTCGTCCAAGAGGAACACC
GTCCACGCCTTGGAAGCCATGGTGTGTGTGTGTGTGTGTGTGTGTGTGGATGAGGTGGAGGGTGA
TGGGAGTGTGTAATGGGTGGTGTGCGTGGAGCGCGTGCGTGGTGCGCGTCAGGTGTGGGTGGAAG
ATTGGGTGGGAGTGAGTTTGAGTGGTGTGAGTGAGAGTGAGTGAA
Right flanking sequence: Indices 17462 -- 17961
AAGGGAAGGAGGGTGAAAGAATGTGTAGGCGTGGAGATGGTGGATCACGTGGGTAGAGTGTGGAG
AGGTGAGAAAGGGTGTAGGGCTTATGGAGTGGTTACTGTGAGATGGGGATTATTGGGCTGGATGG
TGTGAATGTAAGAGGGTGGTATTGGATGAGGTAGAGCCGGGAGAGAACAAGCGTGTACCCAGAGA
CTACAGCAGAACCATGATTGGATAGAAAGAGCTACCGTGAACCAATTGATGTGTAGGTGGGAACC
GATGCCAACCTCTCAGCTCACGTAGGTGAGGACGTGACACACTACTATCGCAACCAAAATTTCTC
CATAGAAACTGGAGCAAAACTTCGATGCTCTCTATCTTATTTATCTCTTCTCTTCTCGTTCGTTT
GTTTTCTGTTTCTCCTGGCATATGTTGAACTTGTGCCATCCGTACGTTCTCCAACCACCTAACTA
CTTTCTACTTGCTGCCCCACCTTCTCTGACGCACCCCACGGCACC
Found at i:18455 original size:17 final size:17
Alignment explanation
Indices: 18430--18522 Score: 70
Period size: 17 Copynumber: 5.7 Consensus size: 17
18420 CAAAGCCAAT
*
18430 TCAAACACCAATACTGC
1 TCAACCACCAATACTGC
* * *
18447 TCAACCACCGATTCAGC
1 TCAACCACCAATACTGC
*
18464 TCAACCACCAA-A-T-A
1 TCAACCACCAATACTGC
*
18478 TCAACCACCAATTCTGC
1 TCAACCACCAATACTGC
* *
18495 TCCA-CACCAACTA-TTC
1 TCAACCACCAA-TACTGC
18511 TCAACCACCAAT
1 TCAACCACCAAT
18523 CATCCACCCT
Statistics
Matches: 57, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
14 11 0.19
16 13 0.23
17 33 0.58
ACGTcount: A:0.37, C:0.40, G:0.04, T:0.19
Consensus pattern (17 bp):
TCAACCACCAATACTGC
Left flanking sequence: Indices 17930 -- 18429
GCCCCACCTTCTCTGACGCACCCCACGGCACCCCTCGCGTCCCATTATCTCCCGTTTCACGTCTG
GCCGACACCAGCCGCTCGAGCCCCGCCCTGACAATAGCCTTCCATTGCATGAGATTGGCTGCAAA
TTTCAGGTGGCTGCAAAAAGTGTAATTGGGAGAAAGAAATAATGGCCGTGTAATTAGACGTAAGT
GGGTGGGATATAGGGGACGTTGTTAGTAAAATTGGCTTCAACACTGGAATTTAAGCAACTGTTCG
AGTTATTTGTACGGTTCTGATTTCTATTTCAAGGACGCAACGAAGTAATAATTCACCACAAAAGA
GCCTACTGTTCAATAAGCCAGTTGAGCTGGTAAACCTCACTCAAGCTCATTCAACTCACGTACGA
ACTCCTTCTAGTTCACAAAAGTGCTAGTAGTAATGGGGTTGTTTTTCAGGCAAAGAAAATCGTTC
AAACCAACCCTAACCCACTAACCAACCCAATTGAGCAAAGCCAAT
Right flanking sequence: Indices 18523 -- 19022
CATCCACCCTTCCTATCTTCCTATTATGTCGTATTAATGGTATTACTTTTGTCCGGCAAATATAA
AAATAAATAAGGCGAGTTCTTTCGCTGCTCACTCGCTGCTAGCTCTCTTCCTTGAGCTCTTCAAA
CCGGCCCTGTTCCTGCCACTGCCTCACAGGGTTCTTGAACCCCAGGAACGTGCCCAACTGCTCCA
TGCGCTCAAACACGTGGAACAACTTCTCCGCCTCTCGCTCCTTCTCCTGCTCCAGCATCTCGGGC
TTCTTCTGCTCCACGCCCGCCGCGGCCGTCAAGATCAGCTTGAACAGCTGGTTGAGGGTGTACGC
CTCCAGCTGGGGAGCCACCAGCGGAGCCACCTCAAAGTAGCGTGGCTTGAGGTACTTGGAAACGT
CGATCGAGCTCGGCATCTCCAAGTGGTTGGCGTCGATGTACCCTTTGGCGTGGACGTACGAAACC
ACCTCCAAGAAATGCGTGTACCGTTTCTTGGGGCTGGGGTCGTAG
Found at i:18483 original size:31 final size:30
Alignment explanation
Indices: 18447--18522 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 30
18437 CCAATACTGC
*
18447 TCAACCACCGATTCAGCTCAACCACCAAATA
1 TCAACCACCAATTCAGCTCAA-CACCAAATA
* * *
18478 TCAACCACCAATTCTGCTCCACACCAACTATTC
1 TCAACCACCAATTCAGCTCAACACCAA--A-TA
18511 TCAACCACCAAT
1 TCAACCACCAAT
18523 CATCCACCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 6 0.16
31 18 0.47
32 1 0.03
33 13 0.34
ACGTcount: A:0.36, C:0.41, G:0.04, T:0.20
Consensus pattern (30 bp):
TCAACCACCAATTCAGCTCAACACCAAATA
Left flanking sequence: Indices 17947 -- 18446
GCACCCCACGGCACCCCTCGCGTCCCATTATCTCCCGTTTCACGTCTGGCCGACACCAGCCGCTC
GAGCCCCGCCCTGACAATAGCCTTCCATTGCATGAGATTGGCTGCAAATTTCAGGTGGCTGCAAA
AAGTGTAATTGGGAGAAAGAAATAATGGCCGTGTAATTAGACGTAAGTGGGTGGGATATAGGGGA
CGTTGTTAGTAAAATTGGCTTCAACACTGGAATTTAAGCAACTGTTCGAGTTATTTGTACGGTTC
TGATTTCTATTTCAAGGACGCAACGAAGTAATAATTCACCACAAAAGAGCCTACTGTTCAATAAG
CCAGTTGAGCTGGTAAACCTCACTCAAGCTCATTCAACTCACGTACGAACTCCTTCTAGTTCACA
AAAGTGCTAGTAGTAATGGGGTTGTTTTTCAGGCAAAGAAAATCGTTCAAACCAACCCTAACCCA
CTAACCAACCCAATTGAGCAAAGCCAATTCAAACACCAATACTGC
Right flanking sequence: Indices 18523 -- 19022
CATCCACCCTTCCTATCTTCCTATTATGTCGTATTAATGGTATTACTTTTGTCCGGCAAATATAA
AAATAAATAAGGCGAGTTCTTTCGCTGCTCACTCGCTGCTAGCTCTCTTCCTTGAGCTCTTCAAA
CCGGCCCTGTTCCTGCCACTGCCTCACAGGGTTCTTGAACCCCAGGAACGTGCCCAACTGCTCCA
TGCGCTCAAACACGTGGAACAACTTCTCCGCCTCTCGCTCCTTCTCCTGCTCCAGCATCTCGGGC
TTCTTCTGCTCCACGCCCGCCGCGGCCGTCAAGATCAGCTTGAACAGCTGGTTGAGGGTGTACGC
CTCCAGCTGGGGAGCCACCAGCGGAGCCACCTCAAAGTAGCGTGGCTTGAGGTACTTGGAAACGT
CGATCGAGCTCGGCATCTCCAAGTGGTTGGCGTCGATGTACCCTTTGGCGTGGACGTACGAAACC
ACCTCCAAGAAATGCGTGTACCGTTTCTTGGGGCTGGGGTCGTAG
Found at i:19396 original size:12 final size:12
Alignment explanation
Indices: 19379--19413 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
19369 GGGGATCGGA
19379 GGAGGTGGTGGC
1 GGAGGTGGTGGC
*
19391 GGAGGTGGTGGT
1 GGAGGTGGTGGC
*
19403 GGCGGTGGTGG
1 GGAGGTGGTGG
19414 GTGCAGGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.06, G:0.69, T:0.20
Consensus pattern (12 bp):
GGAGGTGGTGGC
Left flanking sequence: Indices 18879 -- 19378
TCAAAGTAGCGTGGCTTGAGGTACTTGGAAACGTCGATCGAGCTCGGCATCTCCAAGTGGTTGGC
GTCGATGTACCCTTTGGCGTGGACGTACGAAACCACCTCCAAGAAATGCGTGTACCGTTTCTTGG
GGCTGGGGTCGTAGCAGAGCTCAAAGTAGCAGTCCATGACGATCTGGCGGAGCTTGGTTTCGTCG
CCGGGCGTGAACTGGGCCTGCGACAGCGGCAGGCAGATCACCGCAAGCAGCTTCTCGTAGACAAG
AGGCACCTGGACCCGCGAGGGGAGCATGTCGCGCTTGAAGATGGAGATGAGCACGTTGTCAGCCT
CGTGGCGCATCAGCTTGGCCATAAACGTGATGAGGACAAAGAGGCCCAGCACGTCGTTGGCGGTG
GTGGTGTGGGGCGAGCTCGAGGTCAGAGTCACCAGCGGGCGGCCCGAGTCCGGGTGCGACGGGAG
GGAGGCACTGGAGGGGAGCACCGACGGAGGAGGCGGGGGATCGGA
Right flanking sequence: Indices 19414 -- 19913
GTGCAGGGACACTGGGTGCACTGGCAGTGGGTGTAGGGCCCGAGACAGAGGGTGCCTGGGCAGTG
GGTGCATTAGCAGTGGGTGCATGGGCAGTGGGTGCACCAGACGCAGAGCCAGTGGAGACCGGGAC
AGTCTCGGGCAAGGGTCCAGCGTTGTTACCGTTCTGCGAGGGAGTTTGAGTAATCTGGCCATTCT
GGCCATTCGGGCCAGTATGTTGAACAGTTTGTTGGACAGTCTGAGCATCGGTCTGTTGGCCAGTC
TGGGCACCGTTCTGGGTCTCAGGGGCCACCGCATTTTCAACGGTCTTGCCAGCCTCGCTGACCTT
CAAAGGACCGCCGTTCACGGCACTGTTGTCGCTCACGTCGCTGACACTACCCCTGAGCGCCCCCT
CCACGTCCAACTCAAAGTTGGACAAGTCGATGGCGCCAGTCAAAGGCTTGGTGCCGGTTACACCC
GTCGCACCAGCACCGATGGCACCAGCACCAGTCGCACCAGCACCA
Found at i:19412 original size:15 final size:15
Alignment explanation
Indices: 19375--19413 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
19365 GGCGGGGGAT
*
19375 CGGAGGAGGTGGTGG
1 CGGAGGTGGTGGTGG
19390 CGGAGGTGGTGGTGG
1 CGGAGGTGGTGGTGG
*
19405 CGGTGGTGG
1 CGGAGGTGG
19414 GTGCAGGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.08, C:0.08, G:0.67, T:0.18
Consensus pattern (15 bp):
CGGAGGTGGTGGTGG
Left flanking sequence: Indices 18875 -- 19374
CACCTCAAAGTAGCGTGGCTTGAGGTACTTGGAAACGTCGATCGAGCTCGGCATCTCCAAGTGGT
TGGCGTCGATGTACCCTTTGGCGTGGACGTACGAAACCACCTCCAAGAAATGCGTGTACCGTTTC
TTGGGGCTGGGGTCGTAGCAGAGCTCAAAGTAGCAGTCCATGACGATCTGGCGGAGCTTGGTTTC
GTCGCCGGGCGTGAACTGGGCCTGCGACAGCGGCAGGCAGATCACCGCAAGCAGCTTCTCGTAGA
CAAGAGGCACCTGGACCCGCGAGGGGAGCATGTCGCGCTTGAAGATGGAGATGAGCACGTTGTCA
GCCTCGTGGCGCATCAGCTTGGCCATAAACGTGATGAGGACAAAGAGGCCCAGCACGTCGTTGGC
GGTGGTGGTGTGGGGCGAGCTCGAGGTCAGAGTCACCAGCGGGCGGCCCGAGTCCGGGTGCGACG
GGAGGGAGGCACTGGAGGGGAGCACCGACGGAGGAGGCGGGGGAT
Right flanking sequence: Indices 19414 -- 19913
GTGCAGGGACACTGGGTGCACTGGCAGTGGGTGTAGGGCCCGAGACAGAGGGTGCCTGGGCAGTG
GGTGCATTAGCAGTGGGTGCATGGGCAGTGGGTGCACCAGACGCAGAGCCAGTGGAGACCGGGAC
AGTCTCGGGCAAGGGTCCAGCGTTGTTACCGTTCTGCGAGGGAGTTTGAGTAATCTGGCCATTCT
GGCCATTCGGGCCAGTATGTTGAACAGTTTGTTGGACAGTCTGAGCATCGGTCTGTTGGCCAGTC
TGGGCACCGTTCTGGGTCTCAGGGGCCACCGCATTTTCAACGGTCTTGCCAGCCTCGCTGACCTT
CAAAGGACCGCCGTTCACGGCACTGTTGTCGCTCACGTCGCTGACACTACCCCTGAGCGCCCCCT
CCACGTCCAACTCAAAGTTGGACAAGTCGATGGCGCCAGTCAAAGGCTTGGTGCCGGTTACACCC
GTCGCACCAGCACCGATGGCACCAGCACCAGTCGCACCAGCACCA
Found at i:19483 original size:15 final size:15
Alignment explanation
Indices: 19463--19514 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
19453 CCGAGACAGA
*
19463 GGGTGCCTGGGCAGT
1 GGGTGCATGGGCAGT
**
19478 GGGTGCATTAGCAGT
1 GGGTGCATGGGCAGT
19493 GGGTGCATGGGCAGT
1 GGGTGCATGGGCAGT
19508 GGGTGCA
1 GGGTGCA
19515 CCAGACGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.13, C:0.15, G:0.50, T:0.21
Consensus pattern (15 bp):
GGGTGCATGGGCAGT
Left flanking sequence: Indices 18963 -- 19462
TGGACGTACGAAACCACCTCCAAGAAATGCGTGTACCGTTTCTTGGGGCTGGGGTCGTAGCAGAG
CTCAAAGTAGCAGTCCATGACGATCTGGCGGAGCTTGGTTTCGTCGCCGGGCGTGAACTGGGCCT
GCGACAGCGGCAGGCAGATCACCGCAAGCAGCTTCTCGTAGACAAGAGGCACCTGGACCCGCGAG
GGGAGCATGTCGCGCTTGAAGATGGAGATGAGCACGTTGTCAGCCTCGTGGCGCATCAGCTTGGC
CATAAACGTGATGAGGACAAAGAGGCCCAGCACGTCGTTGGCGGTGGTGGTGTGGGGCGAGCTCG
AGGTCAGAGTCACCAGCGGGCGGCCCGAGTCCGGGTGCGACGGGAGGGAGGCACTGGAGGGGAGC
ACCGACGGAGGAGGCGGGGGATCGGAGGAGGTGGTGGCGGAGGTGGTGGTGGCGGTGGTGGGTGC
AGGGACACTGGGTGCACTGGCAGTGGGTGTAGGGCCCGAGACAGA
Right flanking sequence: Indices 19515 -- 20014
CCAGACGCAGAGCCAGTGGAGACCGGGACAGTCTCGGGCAAGGGTCCAGCGTTGTTACCGTTCTG
CGAGGGAGTTTGAGTAATCTGGCCATTCTGGCCATTCGGGCCAGTATGTTGAACAGTTTGTTGGA
CAGTCTGAGCATCGGTCTGTTGGCCAGTCTGGGCACCGTTCTGGGTCTCAGGGGCCACCGCATTT
TCAACGGTCTTGCCAGCCTCGCTGACCTTCAAAGGACCGCCGTTCACGGCACTGTTGTCGCTCAC
GTCGCTGACACTACCCCTGAGCGCCCCCTCCACGTCCAACTCAAAGTTGGACAAGTCGATGGCGC
CAGTCAAAGGCTTGGTGCCGGTTACACCCGTCGCACCAGCACCGATGGCACCAGCACCAGTCGCA
CCAGCACCAGTCGCACCAGCGGTCGCACTCACTCCCGCACCCGTACTTCCTCCGTTCACTCCACT
CACTCCACTCCCTCCACTCCCTCCCGCATTCGCCCCACTCACACT
Found at i:19687 original size:24 final size:24
Alignment explanation
Indices: 19638--19687 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
19628 TTGAACAGTT
*
19638 TGTTGGACAGTCTGAGCATCGGTC
1 TGTTGGACAGTCTGAGCACCGGTC
* * *
19662 TGTTGGCCAGTCTGGGCACCGTTC
1 TGTTGGACAGTCTGAGCACCGGTC
19686 TG
1 TG
19688 GGTCTCAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (24 bp):
TGTTGGACAGTCTGAGCACCGGTC
Left flanking sequence: Indices 19138 -- 19637
GAGGCACCTGGACCCGCGAGGGGAGCATGTCGCGCTTGAAGATGGAGATGAGCACGTTGTCAGCC
TCGTGGCGCATCAGCTTGGCCATAAACGTGATGAGGACAAAGAGGCCCAGCACGTCGTTGGCGGT
GGTGGTGTGGGGCGAGCTCGAGGTCAGAGTCACCAGCGGGCGGCCCGAGTCCGGGTGCGACGGGA
GGGAGGCACTGGAGGGGAGCACCGACGGAGGAGGCGGGGGATCGGAGGAGGTGGTGGCGGAGGTG
GTGGTGGCGGTGGTGGGTGCAGGGACACTGGGTGCACTGGCAGTGGGTGTAGGGCCCGAGACAGA
GGGTGCCTGGGCAGTGGGTGCATTAGCAGTGGGTGCATGGGCAGTGGGTGCACCAGACGCAGAGC
CAGTGGAGACCGGGACAGTCTCGGGCAAGGGTCCAGCGTTGTTACCGTTCTGCGAGGGAGTTTGA
GTAATCTGGCCATTCTGGCCATTCGGGCCAGTATGTTGAACAGTT
Right flanking sequence: Indices 19688 -- 20187
GGTCTCAGGGGCCACCGCATTTTCAACGGTCTTGCCAGCCTCGCTGACCTTCAAAGGACCGCCGT
TCACGGCACTGTTGTCGCTCACGTCGCTGACACTACCCCTGAGCGCCCCCTCCACGTCCAACTCA
AAGTTGGACAAGTCGATGGCGCCAGTCAAAGGCTTGGTGCCGGTTACACCCGTCGCACCAGCACC
GATGGCACCAGCACCAGTCGCACCAGCACCAGTCGCACCAGCGGTCGCACTCACTCCCGCACCCG
TACTTCCTCCGTTCACTCCACTCACTCCACTCCCTCCACTCCCTCCCGCATTCGCCCCACTCACA
CTCGTCATCACCGGGGCCGTGGCACCACCCTCAGAATTATTCCGCGAGTTCGCCACCGAGTCGCA
CTCGCCACACTCCACCCCCAACCGGCACGTGTACTCCATCAACTGGTGGTGGAGATACTGCATCA
ACGCGTCGCCAAACTCGGGGCAGTGGCGGCACACATACCCAATGT
Found at i:19890 original size:15 final size:15
Alignment explanation
Indices: 19864--19924 Score: 88
Period size: 15 Copynumber: 4.1 Consensus size: 15
19854 GTGCCGGTTA
*
19864 CACCCGTCGCACCAG
1 CACCAGTCGCACCAG
*
19879 CACC-GATGGCACCAG
1 CACCAG-TCGCACCAG
19894 CACCAGTCGCACCAG
1 CACCAGTCGCACCAG
19909 CACCAGTCGCACCAG
1 CACCAGTCGCACCAG
19924 C
1 C
19925 GGTCGCACTC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
14 1 0.02
15 40 0.95
16 1 0.02
ACGTcount: A:0.25, C:0.48, G:0.21, T:0.07
Consensus pattern (15 bp):
CACCAGTCGCACCAG
Left flanking sequence: Indices 19364 -- 19863
AGGCGGGGGATCGGAGGAGGTGGTGGCGGAGGTGGTGGTGGCGGTGGTGGGTGCAGGGACACTGG
GTGCACTGGCAGTGGGTGTAGGGCCCGAGACAGAGGGTGCCTGGGCAGTGGGTGCATTAGCAGTG
GGTGCATGGGCAGTGGGTGCACCAGACGCAGAGCCAGTGGAGACCGGGACAGTCTCGGGCAAGGG
TCCAGCGTTGTTACCGTTCTGCGAGGGAGTTTGAGTAATCTGGCCATTCTGGCCATTCGGGCCAG
TATGTTGAACAGTTTGTTGGACAGTCTGAGCATCGGTCTGTTGGCCAGTCTGGGCACCGTTCTGG
GTCTCAGGGGCCACCGCATTTTCAACGGTCTTGCCAGCCTCGCTGACCTTCAAAGGACCGCCGTT
CACGGCACTGTTGTCGCTCACGTCGCTGACACTACCCCTGAGCGCCCCCTCCACGTCCAACTCAA
AGTTGGACAAGTCGATGGCGCCAGTCAAAGGCTTGGTGCCGGTTA
Right flanking sequence: Indices 19925 -- 20424
GGTCGCACTCACTCCCGCACCCGTACTTCCTCCGTTCACTCCACTCACTCCACTCCCTCCACTCC
CTCCCGCATTCGCCCCACTCACACTCGTCATCACCGGGGCCGTGGCACCACCCTCAGAATTATTC
CGCGAGTTCGCCACCGAGTCGCACTCGCCACACTCCACCCCCAACCGGCACGTGTACTCCATCAA
CTGGTGGTGGAGATACTGCATCAACGCGTCGCCAAACTCGGGGCAGTGGCGGCACACATACCCAA
TGTCGCGCCGGCGCGACTCCGGGTCCCCCGTCACTATAATCGTGATCACGTTCACCAAGTGCTGC
TCGAGCTTCAGCGGGGGCATGCGCCGCGCCCGCACCGCGGTGAAGTGCAGCACCACCGTGTGCAA
CACCTCCGCTGAGGTGTGCTGGGGGTACTTGTGGTACAACAGGTACATCGCCTTGAGCACCTCGA
TGGTGGCCTCGGGCTCGAGCTGGTGGTCCACACAGTAGCCGAGCC
Found at i:19972 original size:9 final size:9
Alignment explanation
Indices: 19960--19993 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
19950 CTTCCTCCGT
19960 TCACTCCAC
1 TCACTCCAC
19969 TCACTCCAC
1 TCACTCCAC
*
19978 TCCCTCCAC
1 TCACTCCAC
*
19987 TCCCTCC
1 TCACTCC
19994 CGCATTCGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.15, C:0.62, G:0.00, T:0.24
Consensus pattern (9 bp):
TCACTCCAC
Left flanking sequence: Indices 19460 -- 19959
AGAGGGTGCCTGGGCAGTGGGTGCATTAGCAGTGGGTGCATGGGCAGTGGGTGCACCAGACGCAG
AGCCAGTGGAGACCGGGACAGTCTCGGGCAAGGGTCCAGCGTTGTTACCGTTCTGCGAGGGAGTT
TGAGTAATCTGGCCATTCTGGCCATTCGGGCCAGTATGTTGAACAGTTTGTTGGACAGTCTGAGC
ATCGGTCTGTTGGCCAGTCTGGGCACCGTTCTGGGTCTCAGGGGCCACCGCATTTTCAACGGTCT
TGCCAGCCTCGCTGACCTTCAAAGGACCGCCGTTCACGGCACTGTTGTCGCTCACGTCGCTGACA
CTACCCCTGAGCGCCCCCTCCACGTCCAACTCAAAGTTGGACAAGTCGATGGCGCCAGTCAAAGG
CTTGGTGCCGGTTACACCCGTCGCACCAGCACCGATGGCACCAGCACCAGTCGCACCAGCACCAG
TCGCACCAGCGGTCGCACTCACTCCCGCACCCGTACTTCCTCCGT
Right flanking sequence: Indices 19994 -- 20493
CGCATTCGCCCCACTCACACTCGTCATCACCGGGGCCGTGGCACCACCCTCAGAATTATTCCGCG
AGTTCGCCACCGAGTCGCACTCGCCACACTCCACCCCCAACCGGCACGTGTACTCCATCAACTGG
TGGTGGAGATACTGCATCAACGCGTCGCCAAACTCGGGGCAGTGGCGGCACACATACCCAATGTC
GCGCCGGCGCGACTCCGGGTCCCCCGTCACTATAATCGTGATCACGTTCACCAAGTGCTGCTCGA
GCTTCAGCGGGGGCATGCGCCGCGCCCGCACCGCGGTGAAGTGCAGCACCACCGTGTGCAACACC
TCCGCTGAGGTGTGCTGGGGGTACTTGTGGTACAACAGGTACATCGCCTTGAGCACCTCGATGGT
GGCCTCGGGCTCGAGCTGGTGGTCCACACAGTAGCCGAGCCCGCGGTCCAAGATGTGCCCGGTGA
CCGCAAGCAACTCCGCGTCCTCCAGGGCGATCCCGTCGTAGAGCA
Found at i:20991 original size:25 final size:24
Alignment explanation
Indices: 20952--20998 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
20942 GGAGGGGGGT
20952 GTGGAGGAGGTGAGGGAGAGAGTG
1 GTGGAGGAGGTGAGGGAGAGAGTG
20976 GTGGAGGGAGGTGAGGGAGAGAG
1 GTGGA-GGAGGTGAGGGAGAGAG
20999 GAGGTGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.64, T:0.11
Consensus pattern (24 bp):
GTGGAGGAGGTGAGGGAGAGAGTG
Left flanking sequence: Indices 20452 -- 20951
CAAGCAACTCCGCGTCCTCCAGGGCGATCCCGTCGTAGAGCACGAGGAACACGAGCCGGTAGCCT
GCCACCATGTCGGCGGTGGTGGCCTCGGGAAGTGCAGCGAGGTGCTGCACCACGTGCCGGAGCAC
CTGGTTCAGGTAGTAGGGGGTGAAGTAGCACTGGTGGAGCAGCCGGTTCACCAACAACACGTTCA
GCACCACCGCGATCATCGCCTGCTGGTCGGCGCGGTTGTCGTGGGCCGGGTCGGTGAGGGTGTGC
ACGATCTGCTGGAGCTGGCGCTCGTCAACCGCCCGGCACCACTCGCTGGAGCGGGCCTGCTGGCG
CAAATGGGCAATATCCATGGGGTGCCAGCACTGAGTCTTTGCTTGATGTGTGGAGCGAACGCACC
ATGCACCGATAAAAGTCGCTGTGGGGGAATGGGCCGGGTGTGTGCAGGGCGCGAGGCGGCGAGTG
CAACCGAGGGGAGGCGTGGAGGTGAGAGGAGTGGTGGAGGGGGGT
Right flanking sequence: Indices 20999 -- 21498
GAGGTGGTGGTTTACGTTGGAGGAGAGGGACGAGAGGTGGTCTAGGGTGGCGAGGGTGGAAGTGA
GGTGCAGAGGTGGATCGGCAGAGTGGCCGCGCGCCTTTGCGGTGCCTCGGTGGCGCCAGGACGCA
CCGGGGCCAGGGCTCAGTGCGATCGGAGCCGACGTAGGTCGGGCTAAAGGCCCAGGGCTGCATCG
GCTGCACGGCGTGTCCCATGCACAGGGGGTGCCTTCCGGATTAGTCGATCGGTTGCACATTAGGC
AAGTGGGCTGCCGAGGGGTGGCGACGAGCCGAGGTTGCGAGTGGGGTGGAGAGCGGTGGTGGGAG
GAGGAGGCGCGGTGTGGGAGGAGGAGGAGGACGAGGCGGAGGGAGTGACGCGGAGGAGAGGGAGG
GGAAGGAAAGAAGCGGGATGACGTAGTGGAGGTGACTCAGGCGCAAGGACACAAAGGGAGGAGGC
AGAGGCAGAGTGAGGGAGTGGCAAAGAGGCAGAGGCAGAAGCAAT
Found at i:20999 original size:13 final size:13
Alignment explanation
Indices: 20954--20999 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
20944 AGGGGGGTGT
20954 GGAG-GAGGTGAG
1 GGAGAGAGGTGAG
20966 GGAGAGA-GTG-G
1 GGAGAGAGGTGAG
*
20977 TGGAGGGAGGTGAG
1 -GGAGAGAGGTGAG
20991 GGAGAGAGG
1 GGAGAGAGG
21000 AGGTGGTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
11 1 0.04
12 13 0.46
13 13 0.46
14 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.65, T:0.09
Consensus pattern (13 bp):
GGAGAGAGGTGAG
Left flanking sequence: Indices 20454 -- 20953
AGCAACTCCGCGTCCTCCAGGGCGATCCCGTCGTAGAGCACGAGGAACACGAGCCGGTAGCCTGC
CACCATGTCGGCGGTGGTGGCCTCGGGAAGTGCAGCGAGGTGCTGCACCACGTGCCGGAGCACCT
GGTTCAGGTAGTAGGGGGTGAAGTAGCACTGGTGGAGCAGCCGGTTCACCAACAACACGTTCAGC
ACCACCGCGATCATCGCCTGCTGGTCGGCGCGGTTGTCGTGGGCCGGGTCGGTGAGGGTGTGCAC
GATCTGCTGGAGCTGGCGCTCGTCAACCGCCCGGCACCACTCGCTGGAGCGGGCCTGCTGGCGCA
AATGGGCAATATCCATGGGGTGCCAGCACTGAGTCTTTGCTTGATGTGTGGAGCGAACGCACCAT
GCACCGATAAAAGTCGCTGTGGGGGAATGGGCCGGGTGTGTGCAGGGCGCGAGGCGGCGAGTGCA
ACCGAGGGGAGGCGTGGAGGTGAGAGGAGTGGTGGAGGGGGGTGT
Right flanking sequence: Indices 21000 -- 21499
AGGTGGTGGTTTACGTTGGAGGAGAGGGACGAGAGGTGGTCTAGGGTGGCGAGGGTGGAAGTGAG
GTGCAGAGGTGGATCGGCAGAGTGGCCGCGCGCCTTTGCGGTGCCTCGGTGGCGCCAGGACGCAC
CGGGGCCAGGGCTCAGTGCGATCGGAGCCGACGTAGGTCGGGCTAAAGGCCCAGGGCTGCATCGG
CTGCACGGCGTGTCCCATGCACAGGGGGTGCCTTCCGGATTAGTCGATCGGTTGCACATTAGGCA
AGTGGGCTGCCGAGGGGTGGCGACGAGCCGAGGTTGCGAGTGGGGTGGAGAGCGGTGGTGGGAGG
AGGAGGCGCGGTGTGGGAGGAGGAGGAGGACGAGGCGGAGGGAGTGACGCGGAGGAGAGGGAGGG
GAAGGAAAGAAGCGGGATGACGTAGTGGAGGTGACTCAGGCGCAAGGACACAAAGGGAGGAGGCA
GAGGCAGAGTGAGGGAGTGGCAAAGAGGCAGAGGCAGAAGCAATG
Found at i:21340 original size:20 final size:21
Alignment explanation
Indices: 21311--21350 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
21301 GGGGTGGAGA
21311 GCGGTGGTGGGAGGAGGAGGC
1 GCGGTGGTGGGAGGAGGAGGC
21332 GCGGT-GTGGGAGGAGGAGG
1 GCGGTGGTGGGAGGAGGAGG
21351 AGGACGAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.15, C:0.07, G:0.68, T:0.10
Consensus pattern (21 bp):
GCGGTGGTGGGAGGAGGAGGC
Left flanking sequence: Indices 20811 -- 21310
GTCTTTGCTTGATGTGTGGAGCGAACGCACCATGCACCGATAAAAGTCGCTGTGGGGGAATGGGC
CGGGTGTGTGCAGGGCGCGAGGCGGCGAGTGCAACCGAGGGGAGGCGTGGAGGTGAGAGGAGTGG
TGGAGGGGGGTGTGGAGGAGGTGAGGGAGAGAGTGGTGGAGGGAGGTGAGGGAGAGAGGAGGTGG
TGGTTTACGTTGGAGGAGAGGGACGAGAGGTGGTCTAGGGTGGCGAGGGTGGAAGTGAGGTGCAG
AGGTGGATCGGCAGAGTGGCCGCGCGCCTTTGCGGTGCCTCGGTGGCGCCAGGACGCACCGGGGC
CAGGGCTCAGTGCGATCGGAGCCGACGTAGGTCGGGCTAAAGGCCCAGGGCTGCATCGGCTGCAC
GGCGTGTCCCATGCACAGGGGGTGCCTTCCGGATTAGTCGATCGGTTGCACATTAGGCAAGTGGG
CTGCCGAGGGGTGGCGACGAGCCGAGGTTGCGAGTGGGGTGGAGA
Right flanking sequence: Indices 21351 -- 21850
AGGACGAGGCGGAGGGAGTGACGCGGAGGAGAGGGAGGGGAAGGAAAGAAGCGGGATGACGTAGT
GGAGGTGACTCAGGCGCAAGGACACAAAGGGAGGAGGCAGAGGCAGAGTGAGGGAGTGGCAAAGA
GGCAGAGGCAGAAGCAATGGAGGCAAAGAGAGAGAGGCAATGGCAATGGCAGTGGCAGAGGCAGT
AGAGAGAGGCATTGGAGAGACATTGGTGATAGTGACTGACAGGGCGTGGTAGAACACGCCAAGAG
GGTGGCTCTGGCTGGGCAGACCTGAAACAGGGAGCGACGAGGCTGAAAAATCGAGGAAGGAAAGC
GAGCCAGGGGCAGCCAGGACACCACCCAGCCAAACGGACCACGGCCAAGACACCCACCCGCTCAG
ACATCCCGTGGCCGCCACCGCAACGCCAAGATCGGCTTAGGCGCCCCCGATGACGTAAAACACGC
CCGGTTAAGAGCACTTCCTCGTTGGCTTATCCCGGTGGTTGTCCC
Found at i:21954 original size:12 final size:12
Alignment explanation
Indices: 21937--21979 Score: 63
Period size: 11 Copynumber: 3.8 Consensus size: 12
21927 TGATATGTGT
*
21937 GGCTATTTTGAG
1 GGCTATTGTGAG
21949 GGCTATTGTG-G
1 GGCTATTGTGAG
21960 GGCTATTGTGA-
1 GGCTATTGTGAG
21971 GGCTATTGT
1 GGCTATTGT
21980 TCGTGGTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.14, C:0.09, G:0.37, T:0.40
Consensus pattern (12 bp):
GGCTATTGTGAG
Left flanking sequence: Indices 21437 -- 21936
ACACAAAGGGAGGAGGCAGAGGCAGAGTGAGGGAGTGGCAAAGAGGCAGAGGCAGAAGCAATGGA
GGCAAAGAGAGAGAGGCAATGGCAATGGCAGTGGCAGAGGCAGTAGAGAGAGGCATTGGAGAGAC
ATTGGTGATAGTGACTGACAGGGCGTGGTAGAACACGCCAAGAGGGTGGCTCTGGCTGGGCAGAC
CTGAAACAGGGAGCGACGAGGCTGAAAAATCGAGGAAGGAAAGCGAGCCAGGGGCAGCCAGGACA
CCACCCAGCCAAACGGACCACGGCCAAGACACCCACCCGCTCAGACATCCCGTGGCCGCCACCGC
AACGCCAAGATCGGCTTAGGCGCCCCCGATGACGTAAAACACGCCCGGTTAAGAGCACTTCCTCG
TTGGCTTATCCCGGTGGTTGTCCCGCCAACCGGGTTGCAACCGGGTTGCTGTTTATAGATTCGTA
GTGGTTATTGGGGCATTGTTGAGTGGCATTGTGTGTGATATGTGT
Right flanking sequence: Indices 21980 -- 22479
TCGTGGTCTAGTCCTTTGAGACGACCTGAGACACTGGCACCTTGAGCACGAGATCTCGTCTACTG
GGGTCGTTTTGGGCACGTTAATGATTTTTCTTAGGTCATACTTTCTAGTCCGTTTCTATAGGCCT
TTTACCGTTTTCTGGGTCGTCTCCTGGGTCGTCTTCTGGTCTTGTTCCGACCCGTCTTCTCTAGG
CTTTGTTTGCGTCCTGTACAGAAGCTGCACGGTGATCGATCGGGCTTATCCCAGGGCTCGTCATC
AAAGGCCGTAAATGGCACAGGTTCGTGGTTTCTCCACTGGAAATCAGGTTTGTGTGACTCTTCAC
TGCTCTACTCACACCTTTACTTACTTTCTTTCCAGACATACCTTACTTTTTCCACTTTTTCCACT
TCTTCCTAGGCATACCTTCTACACACTCCTACTGATTTTCACAGCCTTTGAGCCCTTTGACGACT
CACATGGCCAATTCTCTGTTCTCTGTTCTCACCATTCTCTGTTAT
Found at i:21964 original size:11 final size:11
Alignment explanation
Indices: 21932--21979 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
21922 GTGTGTGATA
*
21932 TGTGTGGCTAT
1 TGTGGGGCTAT
*
21943 TTTGAGGGCTAT
1 TGTG-GGGCTAT
21955 TGTGGGGCTAT
1 TGTGGGGCTAT
*
21966 TGTGAGGCTAT
1 TGTGGGGCTAT
21977 TGT
1 TGT
21980 TCGTGGTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 23 0.72
12 9 0.28
ACGTcount: A:0.12, C:0.08, G:0.38, T:0.42
Consensus pattern (11 bp):
TGTGGGGCTAT
Left flanking sequence: Indices 21432 -- 21931
CAAGGACACAAAGGGAGGAGGCAGAGGCAGAGTGAGGGAGTGGCAAAGAGGCAGAGGCAGAAGCA
ATGGAGGCAAAGAGAGAGAGGCAATGGCAATGGCAGTGGCAGAGGCAGTAGAGAGAGGCATTGGA
GAGACATTGGTGATAGTGACTGACAGGGCGTGGTAGAACACGCCAAGAGGGTGGCTCTGGCTGGG
CAGACCTGAAACAGGGAGCGACGAGGCTGAAAAATCGAGGAAGGAAAGCGAGCCAGGGGCAGCCA
GGACACCACCCAGCCAAACGGACCACGGCCAAGACACCCACCCGCTCAGACATCCCGTGGCCGCC
ACCGCAACGCCAAGATCGGCTTAGGCGCCCCCGATGACGTAAAACACGCCCGGTTAAGAGCACTT
CCTCGTTGGCTTATCCCGGTGGTTGTCCCGCCAACCGGGTTGCAACCGGGTTGCTGTTTATAGAT
TCGTAGTGGTTATTGGGGCATTGTTGAGTGGCATTGTGTGTGATA
Right flanking sequence: Indices 21980 -- 22479
TCGTGGTCTAGTCCTTTGAGACGACCTGAGACACTGGCACCTTGAGCACGAGATCTCGTCTACTG
GGGTCGTTTTGGGCACGTTAATGATTTTTCTTAGGTCATACTTTCTAGTCCGTTTCTATAGGCCT
TTTACCGTTTTCTGGGTCGTCTCCTGGGTCGTCTTCTGGTCTTGTTCCGACCCGTCTTCTCTAGG
CTTTGTTTGCGTCCTGTACAGAAGCTGCACGGTGATCGATCGGGCTTATCCCAGGGCTCGTCATC
AAAGGCCGTAAATGGCACAGGTTCGTGGTTTCTCCACTGGAAATCAGGTTTGTGTGACTCTTCAC
TGCTCTACTCACACCTTTACTTACTTTCTTTCCAGACATACCTTACTTTTTCCACTTTTTCCACT
TCTTCCTAGGCATACCTTCTACACACTCCTACTGATTTTCACAGCCTTTGAGCCCTTTGACGACT
CACATGGCCAATTCTCTGTTCTCTGTTCTCACCATTCTCTGTTAT
Found at i:21977 original size:22 final size:23
Alignment explanation
Indices: 21932--21979 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
21922 GTGTGTGATA
* *
21932 TGTGTGGCTATTTTGAGGGCTAT
1 TGTGGGGCTATTGTGAGGGCTAT
21955 TGTGGGGCTATTGTGA-GGCTAT
1 TGTGGGGCTATTGTGAGGGCTAT
21977 TGT
1 TGT
21980 TCGTGGTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.12, C:0.08, G:0.38, T:0.42
Consensus pattern (23 bp):
TGTGGGGCTATTGTGAGGGCTAT
Left flanking sequence: Indices 21432 -- 21931
CAAGGACACAAAGGGAGGAGGCAGAGGCAGAGTGAGGGAGTGGCAAAGAGGCAGAGGCAGAAGCA
ATGGAGGCAAAGAGAGAGAGGCAATGGCAATGGCAGTGGCAGAGGCAGTAGAGAGAGGCATTGGA
GAGACATTGGTGATAGTGACTGACAGGGCGTGGTAGAACACGCCAAGAGGGTGGCTCTGGCTGGG
CAGACCTGAAACAGGGAGCGACGAGGCTGAAAAATCGAGGAAGGAAAGCGAGCCAGGGGCAGCCA
GGACACCACCCAGCCAAACGGACCACGGCCAAGACACCCACCCGCTCAGACATCCCGTGGCCGCC
ACCGCAACGCCAAGATCGGCTTAGGCGCCCCCGATGACGTAAAACACGCCCGGTTAAGAGCACTT
CCTCGTTGGCTTATCCCGGTGGTTGTCCCGCCAACCGGGTTGCAACCGGGTTGCTGTTTATAGAT
TCGTAGTGGTTATTGGGGCATTGTTGAGTGGCATTGTGTGTGATA
Right flanking sequence: Indices 21980 -- 22479
TCGTGGTCTAGTCCTTTGAGACGACCTGAGACACTGGCACCTTGAGCACGAGATCTCGTCTACTG
GGGTCGTTTTGGGCACGTTAATGATTTTTCTTAGGTCATACTTTCTAGTCCGTTTCTATAGGCCT
TTTACCGTTTTCTGGGTCGTCTCCTGGGTCGTCTTCTGGTCTTGTTCCGACCCGTCTTCTCTAGG
CTTTGTTTGCGTCCTGTACAGAAGCTGCACGGTGATCGATCGGGCTTATCCCAGGGCTCGTCATC
AAAGGCCGTAAATGGCACAGGTTCGTGGTTTCTCCACTGGAAATCAGGTTTGTGTGACTCTTCAC
TGCTCTACTCACACCTTTACTTACTTTCTTTCCAGACATACCTTACTTTTTCCACTTTTTCCACT
TCTTCCTAGGCATACCTTCTACACACTCCTACTGATTTTCACAGCCTTTGAGCCCTTTGACGACT
CACATGGCCAATTCTCTGTTCTCTGTTCTCACCATTCTCTGTTAT
Found at i:22498 original size:26 final size:25
Alignment explanation
Indices: 22469--22536 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 25
22459 GTTCTCACCA
*
22469 TTCTCTGTTATCTTTTTCTCTCTCTTT
1 TTCTCTGTT-TCTTTCTCTCT-TCTTT
22496 TCTCTCTGTTTCTTTCTCTCTTCTTT
1 T-TCTCTGTTTCTTTCTCTCTTCTTT
*
22522 TCTCTTTGTTCTCTT
1 T-TCTCTGTT-TCTT
22537 CTCCGCCTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 14 0.38
27 15 0.41
28 8 0.22
ACGTcount: A:0.01, C:0.28, G:0.04, T:0.66
Consensus pattern (25 bp):
TTCTCTGTTTCTTTCTCTCTTCTTT
Left flanking sequence: Indices 21969 -- 22468
GAGGCTATTGTTCGTGGTCTAGTCCTTTGAGACGACCTGAGACACTGGCACCTTGAGCACGAGAT
CTCGTCTACTGGGGTCGTTTTGGGCACGTTAATGATTTTTCTTAGGTCATACTTTCTAGTCCGTT
TCTATAGGCCTTTTACCGTTTTCTGGGTCGTCTCCTGGGTCGTCTTCTGGTCTTGTTCCGACCCG
TCTTCTCTAGGCTTTGTTTGCGTCCTGTACAGAAGCTGCACGGTGATCGATCGGGCTTATCCCAG
GGCTCGTCATCAAAGGCCGTAAATGGCACAGGTTCGTGGTTTCTCCACTGGAAATCAGGTTTGTG
TGACTCTTCACTGCTCTACTCACACCTTTACTTACTTTCTTTCCAGACATACCTTACTTTTTCCA
CTTTTTCCACTTCTTCCTAGGCATACCTTCTACACACTCCTACTGATTTTCACAGCCTTTGAGCC
CTTTGACGACTCACATGGCCAATTCTCTGTTCTCTGTTCTCACCA
Right flanking sequence: Indices 22537 -- 23036
CTCCGCCTTAGTCGGACGAGGCGACGTCGATCCGGGGGATCAGGCACAGAATCATGGGGCGGGAC
GGGACAGCACGGGACAGGAGTGTCGGAAACGCCGTCCAGAGTGGCAGACGAGGCCTCTGCTCGCG
TAGAGCGGGCGCCACCGCCGGTGGGGCCCACGGTGGCCGTCGGTTCCACCGCTTCGACGATCTTC
TTTGTGACACAAAAGCTTAACTCTAACCTTGACGGAATAGGCGAACAAGGCACAAACCCGGCCAT
TTCTGGCTAGCCGGGCATGTCTGAAACGACACGACACGAAAAAGTCGTAGGACGGGAGAAGACGG
AGGTGGAGGAAAAGGAGTAGAAGACGAATGGGGAGGGGGTGTGGAAGGCTATACGGCAAAGTAGA
GACCAAGTAAAGGCAAAGTAGGCCAAAAGTCCAACTAGAGTCAAAGTAGAGGTAAAGTAGGGTGC
TATTGTGCTAATGGTGCTATGGTGCTATGGTGCTAATAGTGCTAA
Found at i:22539 original size:26 final size:25
Alignment explanation
Indices: 22483--22536 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 25
22473 CTGTTATCTT
22483 TTTCTCTCTCTTTTCTCTCTGTTTC
1 TTTCTCTCTCTTTTCTCTCTGTTTC
*
22508 TTTCTCTCTTCTTTTCTCTTTGTTCTC
1 TTTCTCTC-TCTTTTCTCTCTGTT-TC
22535 TT
1 TT
22537 CTCCGCCTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 8 0.31
26 14 0.54
27 4 0.15
ACGTcount: A:0.00, C:0.30, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTCTCTCTCTTTTCTCTCTGTTTC
Left flanking sequence: Indices 21983 -- 22482
TGGTCTAGTCCTTTGAGACGACCTGAGACACTGGCACCTTGAGCACGAGATCTCGTCTACTGGGG
TCGTTTTGGGCACGTTAATGATTTTTCTTAGGTCATACTTTCTAGTCCGTTTCTATAGGCCTTTT
ACCGTTTTCTGGGTCGTCTCCTGGGTCGTCTTCTGGTCTTGTTCCGACCCGTCTTCTCTAGGCTT
TGTTTGCGTCCTGTACAGAAGCTGCACGGTGATCGATCGGGCTTATCCCAGGGCTCGTCATCAAA
GGCCGTAAATGGCACAGGTTCGTGGTTTCTCCACTGGAAATCAGGTTTGTGTGACTCTTCACTGC
TCTACTCACACCTTTACTTACTTTCTTTCCAGACATACCTTACTTTTTCCACTTTTTCCACTTCT
TCCTAGGCATACCTTCTACACACTCCTACTGATTTTCACAGCCTTTGAGCCCTTTGACGACTCAC
ATGGCCAATTCTCTGTTCTCTGTTCTCACCATTCTCTGTTATCTT
Right flanking sequence: Indices 22537 -- 23036
CTCCGCCTTAGTCGGACGAGGCGACGTCGATCCGGGGGATCAGGCACAGAATCATGGGGCGGGAC
GGGACAGCACGGGACAGGAGTGTCGGAAACGCCGTCCAGAGTGGCAGACGAGGCCTCTGCTCGCG
TAGAGCGGGCGCCACCGCCGGTGGGGCCCACGGTGGCCGTCGGTTCCACCGCTTCGACGATCTTC
TTTGTGACACAAAAGCTTAACTCTAACCTTGACGGAATAGGCGAACAAGGCACAAACCCGGCCAT
TTCTGGCTAGCCGGGCATGTCTGAAACGACACGACACGAAAAAGTCGTAGGACGGGAGAAGACGG
AGGTGGAGGAAAAGGAGTAGAAGACGAATGGGGAGGGGGTGTGGAAGGCTATACGGCAAAGTAGA
GACCAAGTAAAGGCAAAGTAGGCCAAAAGTCCAACTAGAGTCAAAGTAGAGGTAAAGTAGGGTGC
TATTGTGCTAATGGTGCTATGGTGCTATGGTGCTAATAGTGCTAA
Found at i:23001 original size:8 final size:8
Alignment explanation
Indices: 22987--23026 Score: 62
Period size: 8 Copynumber: 4.9 Consensus size: 8
22977 GGTAAAGTAG
22987 GGTGCTAT
1 GGTGCTAT
*
22995 TGTGCTAAT
1 GGTGCT-AT
23004 GGTGCTAT
1 GGTGCTAT
23012 GGTGCTAT
1 GGTGCTAT
23020 GGTGCTA
1 GGTGCTA
23027 ATAGTGCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.15, C:0.12, G:0.35, T:0.38
Consensus pattern (8 bp):
GGTGCTAT
Left flanking sequence: Indices 22487 -- 22986
TCTCTCTTTTCTCTCTGTTTCTTTCTCTCTTCTTTTCTCTTTGTTCTCTTCTCCGCCTTAGTCGG
ACGAGGCGACGTCGATCCGGGGGATCAGGCACAGAATCATGGGGCGGGACGGGACAGCACGGGAC
AGGAGTGTCGGAAACGCCGTCCAGAGTGGCAGACGAGGCCTCTGCTCGCGTAGAGCGGGCGCCAC
CGCCGGTGGGGCCCACGGTGGCCGTCGGTTCCACCGCTTCGACGATCTTCTTTGTGACACAAAAG
CTTAACTCTAACCTTGACGGAATAGGCGAACAAGGCACAAACCCGGCCATTTCTGGCTAGCCGGG
CATGTCTGAAACGACACGACACGAAAAAGTCGTAGGACGGGAGAAGACGGAGGTGGAGGAAAAGG
AGTAGAAGACGAATGGGGAGGGGGTGTGGAAGGCTATACGGCAAAGTAGAGACCAAGTAAAGGCA
AAGTAGGCCAAAAGTCCAACTAGAGTCAAAGTAGAGGTAAAGTAG
Right flanking sequence: Indices 23027 -- 23526
ATAGTGCTAATAGTGCTAGTAACCCTTGTGGCTTCAGACTTTTCACCACCAGACCCTATGCTCAC
CACCGCCTTGACGTTGACGGATTATTCACCACATCGGGTGGCTGGAGACTAAAATTGCTTTTGAG
ATCTTTGCGGGGAGAGTTGTTGGGGCGTGTGGGGAGAGAAGGTTGGGCGGCCAGTCGACACGAGT
TGGGTTGCGAAGGATGGGTTGCTCTGGGGTTGCTGGATCGGGTTGCCTGTTTGGGCTCCTGGGCG
GTTAAAAATTTTGAAAACGTGGGGAAGTGGTGGCTAATGGAGTTAGTAGCCACTGGCGGATGAAA
CAATTGGTGACGATATAGCAAAAAGACGCCTTATCGTATTATCTTATTATCATATTTTCGTGTTA
TCGTATTATCGAGTAGTGTTGGTCAATGGCTCCTGGCCATCAGTTTGTGGAGGAGCTCCCCAGGT
ATTGCGTATCAGCCATGGTGGAGCCACGGGAGTGCTTATCAGCCT
Found at i:23010 original size:9 final size:9
Alignment explanation
Indices: 22987--23044 Score: 68
Period size: 9 Copynumber: 6.8 Consensus size: 9
22977 GGTAAAGTAG
22987 GGTGCT-AT
1 GGTGCTAAT
*
22995 TGTGCTAAT
1 GGTGCTAAT
23004 GGTGCT-AT
1 GGTGCTAAT
23012 GGTGCT-AT
1 GGTGCTAAT
23020 GGTGCTAAT
1 GGTGCTAAT
*
23029 AGTGCTAAT
1 GGTGCTAAT
*
23038 AGTGCTA
1 GGTGCTA
23045 GTAACCCTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.47
9 24 0.53
ACGTcount: A:0.21, C:0.12, G:0.31, T:0.36
Consensus pattern (9 bp):
GGTGCTAAT
Left flanking sequence: Indices 22487 -- 22986
TCTCTCTTTTCTCTCTGTTTCTTTCTCTCTTCTTTTCTCTTTGTTCTCTTCTCCGCCTTAGTCGG
ACGAGGCGACGTCGATCCGGGGGATCAGGCACAGAATCATGGGGCGGGACGGGACAGCACGGGAC
AGGAGTGTCGGAAACGCCGTCCAGAGTGGCAGACGAGGCCTCTGCTCGCGTAGAGCGGGCGCCAC
CGCCGGTGGGGCCCACGGTGGCCGTCGGTTCCACCGCTTCGACGATCTTCTTTGTGACACAAAAG
CTTAACTCTAACCTTGACGGAATAGGCGAACAAGGCACAAACCCGGCCATTTCTGGCTAGCCGGG
CATGTCTGAAACGACACGACACGAAAAAGTCGTAGGACGGGAGAAGACGGAGGTGGAGGAAAAGG
AGTAGAAGACGAATGGGGAGGGGGTGTGGAAGGCTATACGGCAAAGTAGAGACCAAGTAAAGGCA
AAGTAGGCCAAAAGTCCAACTAGAGTCAAAGTAGAGGTAAAGTAG
Right flanking sequence: Indices 23045 -- 23544
GTAACCCTTGTGGCTTCAGACTTTTCACCACCAGACCCTATGCTCACCACCGCCTTGACGTTGAC
GGATTATTCACCACATCGGGTGGCTGGAGACTAAAATTGCTTTTGAGATCTTTGCGGGGAGAGTT
GTTGGGGCGTGTGGGGAGAGAAGGTTGGGCGGCCAGTCGACACGAGTTGGGTTGCGAAGGATGGG
TTGCTCTGGGGTTGCTGGATCGGGTTGCCTGTTTGGGCTCCTGGGCGGTTAAAAATTTTGAAAAC
GTGGGGAAGTGGTGGCTAATGGAGTTAGTAGCCACTGGCGGATGAAACAATTGGTGACGATATAG
CAAAAAGACGCCTTATCGTATTATCTTATTATCATATTTTCGTGTTATCGTATTATCGAGTAGTG
TTGGTCAATGGCTCCTGGCCATCAGTTTGTGGAGGAGCTCCCCAGGTATTGCGTATCAGCCATGG
TGGAGCCACGGGAGTGCTTATCAGCCTGGTTGAGAGTGCTTATTG
Found at i:23024 original size:25 final size:26
Alignment explanation
Indices: 22987--23044 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
22977 GGTAAAGTAG
* *
22987 GGTGCTATTGTGCTAATGGTGCT-AT
1 GGTGCTATGGTGCTAATAGTGCTAAT
23012 GGTGCTATGGTGCTAATAGTGCTAAT
1 GGTGCTATGGTGCTAATAGTGCTAAT
*
23038 AGTGCTA
1 GGTGCTA
23045 GTAACCCTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.21, C:0.12, G:0.31, T:0.36
Consensus pattern (26 bp):
GGTGCTATGGTGCTAATAGTGCTAAT
Left flanking sequence: Indices 22487 -- 22986
TCTCTCTTTTCTCTCTGTTTCTTTCTCTCTTCTTTTCTCTTTGTTCTCTTCTCCGCCTTAGTCGG
ACGAGGCGACGTCGATCCGGGGGATCAGGCACAGAATCATGGGGCGGGACGGGACAGCACGGGAC
AGGAGTGTCGGAAACGCCGTCCAGAGTGGCAGACGAGGCCTCTGCTCGCGTAGAGCGGGCGCCAC
CGCCGGTGGGGCCCACGGTGGCCGTCGGTTCCACCGCTTCGACGATCTTCTTTGTGACACAAAAG
CTTAACTCTAACCTTGACGGAATAGGCGAACAAGGCACAAACCCGGCCATTTCTGGCTAGCCGGG
CATGTCTGAAACGACACGACACGAAAAAGTCGTAGGACGGGAGAAGACGGAGGTGGAGGAAAAGG
AGTAGAAGACGAATGGGGAGGGGGTGTGGAAGGCTATACGGCAAAGTAGAGACCAAGTAAAGGCA
AAGTAGGCCAAAAGTCCAACTAGAGTCAAAGTAGAGGTAAAGTAG
Right flanking sequence: Indices 23045 -- 23544
GTAACCCTTGTGGCTTCAGACTTTTCACCACCAGACCCTATGCTCACCACCGCCTTGACGTTGAC
GGATTATTCACCACATCGGGTGGCTGGAGACTAAAATTGCTTTTGAGATCTTTGCGGGGAGAGTT
GTTGGGGCGTGTGGGGAGAGAAGGTTGGGCGGCCAGTCGACACGAGTTGGGTTGCGAAGGATGGG
TTGCTCTGGGGTTGCTGGATCGGGTTGCCTGTTTGGGCTCCTGGGCGGTTAAAAATTTTGAAAAC
GTGGGGAAGTGGTGGCTAATGGAGTTAGTAGCCACTGGCGGATGAAACAATTGGTGACGATATAG
CAAAAAGACGCCTTATCGTATTATCTTATTATCATATTTTCGTGTTATCGTATTATCGAGTAGTG
TTGGTCAATGGCTCCTGGCCATCAGTTTGTGGAGGAGCTCCCCAGGTATTGCGTATCAGCCATGG
TGGAGCCACGGGAGTGCTTATCAGCCTGGTTGAGAGTGCTTATTG
Found at i:23399 original size:8 final size:8
Alignment explanation
Indices: 23382--23427 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
23372 AAAAGACGCC
23382 TTATCGTA
1 TTATCGTA
*
23390 TTATCTTA
1 TTATCGTA
*
23398 TTATCATA
1 TTATCGTA
* *
23406 TTTTCGTG
1 TTATCGTA
23414 TTATCGTA
1 TTATCGTA
23422 TTATCG
1 TTATCG
23428 AGTAGTGTTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.22, C:0.13, G:0.11, T:0.54
Consensus pattern (8 bp):
TTATCGTA
Left flanking sequence: Indices 22882 -- 23381
AAGACGAATGGGGAGGGGGTGTGGAAGGCTATACGGCAAAGTAGAGACCAAGTAAAGGCAAAGTA
GGCCAAAAGTCCAACTAGAGTCAAAGTAGAGGTAAAGTAGGGTGCTATTGTGCTAATGGTGCTAT
GGTGCTATGGTGCTAATAGTGCTAATAGTGCTAGTAACCCTTGTGGCTTCAGACTTTTCACCACC
AGACCCTATGCTCACCACCGCCTTGACGTTGACGGATTATTCACCACATCGGGTGGCTGGAGACT
AAAATTGCTTTTGAGATCTTTGCGGGGAGAGTTGTTGGGGCGTGTGGGGAGAGAAGGTTGGGCGG
CCAGTCGACACGAGTTGGGTTGCGAAGGATGGGTTGCTCTGGGGTTGCTGGATCGGGTTGCCTGT
TTGGGCTCCTGGGCGGTTAAAAATTTTGAAAACGTGGGGAAGTGGTGGCTAATGGAGTTAGTAGC
CACTGGCGGATGAAACAATTGGTGACGATATAGCAAAAAGACGCC
Right flanking sequence: Indices 23428 -- 23927
AGTAGTGTTGGTCAATGGCTCCTGGCCATCAGTTTGTGGAGGAGCTCCCCAGGTATTGCGTATCA
GCCATGGTGGAGCCACGGGAGTGCTTATCAGCCTGGTTGAGAGTGCTTATTGTTGCCTCACAATC
ACTTAGAGTCCGAATAGCTCGTAGATGGCCTAACTCACGATACTGTGGCGCTGTCTGTAACGACC
TGGAGTAATGAGCGATGAAACTTCGGAATAAACCAGTAGTGGATCAGTAGGTTAGTGTAAGATAA
GTAATAAGGCGAATCTACATTTGAAGGCAGGTATGTGGTTGAATAGGGAGTGCCTTGTTCGCTGA
CTGCGTACTGTTGTGACCCGTACCATATGATAGACAGCCGGTGACACCCAAACATGGTTAGTCGC
CAAGAGGTAAACGCAGGCACGGAAATTTATGTCACTCTATCACGATATAGACTAAGAGTATTTCG
TGGTGGAGAAATTCTAGATTTTTCCCGATTTAGATTGGCTTTGCT
Found at i:25425 original size:21 final size:20
Alignment explanation
Indices: 25397--25442 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
25387 ACAAGAGCAG
25397 CCGGGCCAACTGCCACGAGC
1 CCGGGCCAACTGCCACGAGC
*
25417 CCGGCGCCAGCTGCCACGAGC
1 CCGG-GCCAACTGCCACGAGC
25438 CCGGG
1 CCGGG
25443 TCCGCCCCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.15, C:0.46, G:0.35, T:0.04
Consensus pattern (20 bp):
CCGGGCCAACTGCCACGAGC
Left flanking sequence: Indices 24897 -- 25396
CGCTAAAACAGCCCCAGCGCCGCCTCCACCGCCGCCAACAACTCCTGGGCCTCGTCGGGGTCCAA
CCGCGCCGCCACAAACCGGAGACAGTGCACCAGTGCCTGCCAGAGCGCGCGGTTGCCCTCGTACG
TCCGCACCACCCCCACCACCTCCCGACACACCCGTCCTGCATAGTCCCCCAGGTACTGGGCGAGC
TCGTGGTCGACGCCCCCGTCGTCCCGCGGCGGCCGCGTGGCGAGCGTCTCGTAGAGAAGCACCCG
CACCACCTGGACGTTGATCCACGCCATCGCCGCCGTCGCCAGCCCGAAATACACCACGGGGTACC
GCTGGTCGCTGGCCCAGGTGTAGATGGTTGGGGGCACTGACGCCCGGACCACGGCGTCGGTGCGG
GCCACCAACCGCCGCCACTCGGCAAGCGGCTGGTTGGCCTGGTGCTCGGGCTGCGAGAGACACCC
GGGCCGCCACCGGAGCTCGGTGGCCGCCAGCAACAACAAGAGCAG
Right flanking sequence: Indices 25443 -- 25942
TCCGCCCCGGGGTCCGCCAACCGCGCGAAAAACTGGGGGTCCAACGGGGCCCAGAACCGGGGCAC
ACTGAACATGGGGGGGGCGTCACACAGGAGGCCGCGGTAGGCGTCGCAGGCGAGAATGACGACGA
AGCACGCGTAGTAGAGGGGCAGCTCCGCAAGCACGCCCCGCGGTTTGCGTGCCAAGATCAGCAGG
AGGATGGTCAGCGCCCCGCGCACATAGGTCAGGTCCACCGCCACAAAGAACATCTCGTAGATGCA
GAGGAAGACCGTCAGCAACAAGCAGCGGGCGATCACGCCGTGGCTCAGCTGCTCGACGCCCGGGG
CCGCCAACTGGTGGCGGATCAGCTGGATCGCCTGGTGGTAGTACCGGAGCGGCACCGACGACGGG
TCGGGGGTGCGGCGCGCGTGTGCCACCAGCAGCACACAGAGCACCAGGTGCAAGAGCATGTTGGT
GTCGTCGTATAGCGCCAAGTCGGGGACGACGCGCCCAAAGAGGGG
Found at i:28759 original size:9 final size:9
Alignment explanation
Indices: 28740--28795 Score: 76
Period size: 9 Copynumber: 6.0 Consensus size: 9
28730 AGAGGACATG
28740 GGCTGAAGCA
1 GGCT-AAGCA
28750 GGCTAAGCA
1 GGCTAAGCA
28759 GGCTAAGCA
1 GGCTAAGCA
*
28768 GGCCAAGCA
1 GGCTAAGCA
*
28777 GGCTATGCA
1 GGCTAAGCA
28786 GGCTCAAGCA
1 GGCT-AAGCA
28796 TTGGTTTGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
9 33 0.80
10 8 0.20
ACGTcount: A:0.30, C:0.25, G:0.34, T:0.11
Consensus pattern (9 bp):
GGCTAAGCA
Left flanking sequence: Indices 28240 -- 28739
CCGGGCCAGATGATCGCTCCAGGGCTCGGCCTAGATGCAGCTCTCCACGGGCCCGCTTCCAGTCA
CCCTTTCTGGGGGCCCAGGGCGGTGGGGAATCGCTTCCGCTTGCCGTGGAAAAATTAGGGGTTGC
TGGAGATGTCGTCCGTTGGCGGTGGAGGAGGCCTTTGCCTTGAGACCCGATGGTTGCCTGGTGGT
GGCTGCCAAAAATACGAGATGGTCGAAATCGCGTTCGGACGATCTTCAGCGGCCAGCGGTGGCAG
CGGTGGCCCCGTGGGATTTTTGCTGGCAAGGGTGGCTTTTGTTGTTGCTGTTGGGCTATAATCCT
GGCCTGAATAAGTGGCCTTGACCACCACCACCACCAGCGGTGCCCCACCATTGCGAATACCGGTC
GGCATTAGATCCAAAAAGCAACGAAAAGGATCTCCGGAGAGCCGAACCGTTGTCTGTCACCGGGG
CGCCCGTGCATTGGTTGCTGATCTCGGAAGGGGGCAGAGGACATG
Right flanking sequence: Indices 28796 -- 29295
TTGGTTTGTTGAAACCAAGCGGGCGGGATGACGAGGAGGCTAGCATTAGGCAGAGGTTCAGTCTA
GCCTAATCCGTATCTGTTCACTAAATCAGTGGATAGATTCAAGATAGGCAGAGCGTGAGTATATT
GGCTGCTTGATTTTGTGCTAATACGACGGGGAATGTGAGAGTCCGATCTATGGGTTTAGCCAGTA
TGAATGATCCGTGAGGAAAAAGGAGTTCTAGCTTTATGGTCATACGAAGGCTATATTGTCAGTTC
TCTCGTGACCTTAGTTTTGACAAGCGGGGTATAGTTACAAGCGAACACCACCCGTAATGTCAGTG
AAATCCACTCGTACATTTACGGGTTACTAAGAAGTTTGCGTAGGTATTAACCCAACTTCACTTAA
TCTCTTGAATGACACAGCTGAACCAAATAAAATTCTTTGATTAAAATTTTCGAAGGAACAGGAGG
AAATAAATAAAATGACCCATTATGCAAATATTAAGCTTCATTTGC
Found at i:29644 original size:20 final size:20
Alignment explanation
Indices: 29599--29670 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
29589 GTACCTAAAT
*
29599 CACTAATCCACC-GTAACCAC
1 CACTAGTCCACCTG-AACCAC
** * *
29619 TTCTAGACCACCTGAACGAC
1 CACTAGTCCACCTGAACCAC
*
29639 TACTAGTCCACCTGAACCAC
1 CACTAGTCCACCTGAACCAC
29659 CACTAGTCCACC
1 CACTAGTCCACC
29671 ACATTCACAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 41 0.98
21 1 0.02
ACGTcount: A:0.31, C:0.42, G:0.10, T:0.18
Consensus pattern (20 bp):
CACTAGTCCACCTGAACCAC
Left flanking sequence: Indices 29099 -- 29598
AACACCACCCGTAATGTCAGTGAAATCCACTCGTACATTTACGGGTTACTAAGAAGTTTGCGTAG
GTATTAACCCAACTTCACTTAATCTCTTGAATGACACAGCTGAACCAAATAAAATTCTTTGATTA
AAATTTTCGAAGGAACAGGAGGAAATAAATAAAATGACCCATTATGCAAATATTAAGCTTCATTT
GCCACTTGCGATCCTTATTCATACATAGCAAAATCTTCCTCCCTACCAGCGGCTGGCCAAATTGG
TTATATGGATACTTGGGTGAAGTTTGACTTCGGGAGAGGTGATTCAAAACTATTTTGAGATTTGA
AATTGGTTGTTTGGCCTCTCAAATTTTTGTGGTATTGCGCTTCAATATGGCGAGCCCACGATACT
AGCGTGCAGTCATCATATCCCTGTAGCTTAATGGTTGGCTAGCGTCGGGTGCAGCTAACCAAAGC
TCGAGGTAGCGTAAAACCACCAGTTCACCACCAGAGTACCTAAAT
Right flanking sequence: Indices 29671 -- 30170
ACATTCACAACCAAAGCATCATTAATACTAAATTCACTCAAGTTCCACAAACCACACAGATGGTC
GCAAGCCCATATTCCTGGAACCTAGTCCTTACGTGTATTTGTCAACGTCTCTACCCCTTATGGAA
ATCCCACTTGTGGAGATCTATCGATCCCCCTCGTCCCTTTCATTTTCCGTTAATTATCTAAATAC
TCAGAAATTAACGTCTTGCGTCCCACGGATCGGAGAACCCATTGATCGTGACTTGTGTCATGGTA
GCTTCTTCGGTATATTGGCTCTTCGGTATATTGCCCAGTCTACGCTGGCTTCTATTGCCTCACTC
TTCCTTTCTCGCCAACACAATCACCGTCCGGCACGGAATATACACCATCGCCGAGTTCCGCCGGT
CGTTCCACGGCTCGGGCGACGTAAACACCCGCTGGGCGTCGTCCACCCGCGCGTGGCCCCCGTAC
TCCTCGCGGTCCAGGTCCAACACCACCCGGTACTCGCCCGGCTCG
Found at i:32202 original size:3 final size:3
Alignment explanation
Indices: 32194--32259 Score: 55
Period size: 3 Copynumber: 20.7 Consensus size: 3
32184 GAAGCAGACC
*
32194 GGA GGA GGA GGAA GGA GGGA GGA -GA GG- GAA GAGA GGGA GGA GGA GGA
1 GGA GGA GGA GG-A GGA -GGA GGA GGA GGA GGA G-GA -GGA GGA GGA GGA
32241 GGGA GGA GGAA GGA GGA GG
1 -GGA GGA GG-A GGA GGA GG
32260 GAAGGGAAGG
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
2 3 0.06
3 34 0.64
4 15 0.28
5 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (3 bp):
GGA
Left flanking sequence: Indices 31694 -- 32193
GTACCGCAGGTCGTGCGCAATCACGCACTCGCCGTGGTGGGCCGGGATCGTCAACGTCCACAACC
CAAAGTCGTTGGCGGGCTGCAACGGGTGGGCCTCGGGGTCCCACTGGTTGAAGTCGCCCACGAGG
GCCACCAGGGTGACCCCGGGCACATACAACGCTGCCTGCACAGAGCCCGAGGGGTCTGCGTGCAC
CCCGTACCGCTTGTAGGAGTCGGCAAACTGGGCAAGCAGCCCCTCGGACTGGTTGAGCTCGTCGA
GGGTGGCCCGGAAGGTGGTCTGGCGGGCCTCGAGGGGCTTCGAGTAGGGCTCCAACCACGGGTCG
AGCTGCAACGCTCCTTTGATCAAGTCAGACATGCCAATTGGGTGTAGAGAGCTGGCCAAAGGGGA
TAGTGGGTGAGCAATTGGCCAGAAGCTTAATGGGGGGTACTTTATAGTGGTGAGATAGTCGGGCT
GTGTGCAGTACTGCGGGGCACGCCTTGCTCGGAGGGAAGCAGACC
Right flanking sequence: Indices 32260 -- 32759
GAAGGGAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTGGAGTGGTGGGGTGGTGTGGTGT
AGTGGTGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAGCTTTTCTGCTGGCTCAGCGTTT
CAGGCAGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCCGCAGGCGGTTCGGGCGCAGTAG
CCGGGCGCAGCGGCTTAGAGGGGTGGTGGCTGTTGGTGGCTGTTGGTGGGGTGCGGTGGTGGCCA
GTGTGTGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCTATCTCTAGCCAAGCAT
CGAAGAGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGTAGTCTTTTAGGGCACA
CGATCACCGCAATGTCACCGCAATGTCAACGCACTGTCACCCCTGTCATGGCACTGTCATCCCTG
TCACCACACTGGTACCACACTGTCACCACCACCTCACCTACGCTT
Found at i:32211 original size:7 final size:7
Alignment explanation
Indices: 32194--32257 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
32184 GAAGCAGACC
32194 GGAGG-A
1 GGAGGAA
32200 GGAGGAA
1 GGAGGAA
*
32207 GGAGGGAG
1 GGA-GGAA
32215 GAGAGGGAA
1 G-GA-GGAA
*
32224 GAGAGGGA
1 G-GAGGAA
32232 GGAGG-A
1 GGAGGAA
*
32238 GGAGGGA
1 GGAGGAA
32245 GGAGGAA
1 GGAGGAA
32252 GGAGGA
1 GGAGGA
32258 GGGAAGGGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
6 11 0.22
7 21 0.42
8 8 0.16
9 10 0.20
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (7 bp):
GGAGGAA
Left flanking sequence: Indices 31694 -- 32193
GTACCGCAGGTCGTGCGCAATCACGCACTCGCCGTGGTGGGCCGGGATCGTCAACGTCCACAACC
CAAAGTCGTTGGCGGGCTGCAACGGGTGGGCCTCGGGGTCCCACTGGTTGAAGTCGCCCACGAGG
GCCACCAGGGTGACCCCGGGCACATACAACGCTGCCTGCACAGAGCCCGAGGGGTCTGCGTGCAC
CCCGTACCGCTTGTAGGAGTCGGCAAACTGGGCAAGCAGCCCCTCGGACTGGTTGAGCTCGTCGA
GGGTGGCCCGGAAGGTGGTCTGGCGGGCCTCGAGGGGCTTCGAGTAGGGCTCCAACCACGGGTCG
AGCTGCAACGCTCCTTTGATCAAGTCAGACATGCCAATTGGGTGTAGAGAGCTGGCCAAAGGGGA
TAGTGGGTGAGCAATTGGCCAGAAGCTTAATGGGGGGTACTTTATAGTGGTGAGATAGTCGGGCT
GTGTGCAGTACTGCGGGGCACGCCTTGCTCGGAGGGAAGCAGACC
Right flanking sequence: Indices 32258 -- 32757
GGGAAGGGAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTGGAGTGGTGGGGTGGTGTGGT
GTAGTGGTGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAGCTTTTCTGCTGGCTCAGCGT
TTCAGGCAGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCCGCAGGCGGTTCGGGCGCAGT
AGCCGGGCGCAGCGGCTTAGAGGGGTGGTGGCTGTTGGTGGCTGTTGGTGGGGTGCGGTGGTGGC
CAGTGTGTGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCTATCTCTAGCCAAGC
ATCGAAGAGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGTAGTCTTTTAGGGCA
CACGATCACCGCAATGTCACCGCAATGTCAACGCACTGTCACCCCTGTCATGGCACTGTCATCCC
TGTCACCACACTGGTACCACACTGTCACCACCACCTCACCTACGC
Found at i:32211 original size:10 final size:10
Alignment explanation
Indices: 32196--32264 Score: 66
Period size: 10 Copynumber: 6.3 Consensus size: 10
32186 AGCAGACCGG
32196 AGGAGGAGGA
1 AGGAGGAGGA
32206 AGGAGGGAGGA
1 AGGA-GGAGGA
*
32217 GAGGGAAGAGAGGG
1 -A-GG-AG-GAGGA
32231 AGGAGGAGGA
1 AGGAGGAGGA
*
32241 GGGAGGAGGA
1 AGGAGGAGGA
32251 AGGAGGAGGGA
1 AGGAGGA-GGA
32262 AGG
1 AGG
32265 GAAGGGAAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
10 23 0.47
11 14 0.29
12 3 0.06
13 4 0.08
14 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (10 bp):
AGGAGGAGGA
Left flanking sequence: Indices 31696 -- 32195
ACCGCAGGTCGTGCGCAATCACGCACTCGCCGTGGTGGGCCGGGATCGTCAACGTCCACAACCCA
AAGTCGTTGGCGGGCTGCAACGGGTGGGCCTCGGGGTCCCACTGGTTGAAGTCGCCCACGAGGGC
CACCAGGGTGACCCCGGGCACATACAACGCTGCCTGCACAGAGCCCGAGGGGTCTGCGTGCACCC
CGTACCGCTTGTAGGAGTCGGCAAACTGGGCAAGCAGCCCCTCGGACTGGTTGAGCTCGTCGAGG
GTGGCCCGGAAGGTGGTCTGGCGGGCCTCGAGGGGCTTCGAGTAGGGCTCCAACCACGGGTCGAG
CTGCAACGCTCCTTTGATCAAGTCAGACATGCCAATTGGGTGTAGAGAGCTGGCCAAAGGGGATA
GTGGGTGAGCAATTGGCCAGAAGCTTAATGGGGGGTACTTTATAGTGGTGAGATAGTCGGGCTGT
GTGCAGTACTGCGGGGCACGCCTTGCTCGGAGGGAAGCAGACCGG
Right flanking sequence: Indices 32265 -- 32764
GAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTGGAGTGGTGGGGTGGTGTGGTGTAGTGG
TGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAGCTTTTCTGCTGGCTCAGCGTTTCAGGC
AGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCCGCAGGCGGTTCGGGCGCAGTAGCCGGG
CGCAGCGGCTTAGAGGGGTGGTGGCTGTTGGTGGCTGTTGGTGGGGTGCGGTGGTGGCCAGTGTG
TGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCTATCTCTAGCCAAGCATCGAAG
AGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGTAGTCTTTTAGGGCACACGATC
ACCGCAATGTCACCGCAATGTCAACGCACTGTCACCCCTGTCATGGCACTGTCATCCCTGTCACC
ACACTGGTACCACACTGTCACCACCACCTCACCTACGCTTCTTTA
Found at i:32266 original size:35 final size:35
Alignment explanation
Indices: 32180--32250 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 35
32170 GCCTTGCTCG
*
32180 GAGGGAAGCAGACCGGAGGAGGAGGAAGGAGGGAGGA
1 GAGGGAAG-AGA-GGGAGGAGGAGGAAGGAGGGAGGA
*
32217 GAGGGAAGAGAGGGAGGAGGAGGAGGGA-GGAGGA
1 GAGGGAAGAGAGGGAGGAGGAGGAAGGAGGGAGGA
32251 AGGAGGAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
34 6 0.19
35 15 0.47
36 3 0.09
37 8 0.25
ACGTcount: A:0.35, C:0.04, G:0.61, T:0.00
Consensus pattern (35 bp):
GAGGGAAGAGAGGGAGGAGGAGGAAGGAGGGAGGA
Left flanking sequence: Indices 31680 -- 32179
GTCAACACAAACTTGTACCGCAGGTCGTGCGCAATCACGCACTCGCCGTGGTGGGCCGGGATCGT
CAACGTCCACAACCCAAAGTCGTTGGCGGGCTGCAACGGGTGGGCCTCGGGGTCCCACTGGTTGA
AGTCGCCCACGAGGGCCACCAGGGTGACCCCGGGCACATACAACGCTGCCTGCACAGAGCCCGAG
GGGTCTGCGTGCACCCCGTACCGCTTGTAGGAGTCGGCAAACTGGGCAAGCAGCCCCTCGGACTG
GTTGAGCTCGTCGAGGGTGGCCCGGAAGGTGGTCTGGCGGGCCTCGAGGGGCTTCGAGTAGGGCT
CCAACCACGGGTCGAGCTGCAACGCTCCTTTGATCAAGTCAGACATGCCAATTGGGTGTAGAGAG
CTGGCCAAAGGGGATAGTGGGTGAGCAATTGGCCAGAAGCTTAATGGGGGGTACTTTATAGTGGT
GAGATAGTCGGGCTGTGTGCAGTACTGCGGGGCACGCCTTGCTCG
Right flanking sequence: Indices 32251 -- 32750
AGGAGGAGGGAAGGGAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTGGAGTGGTGGGGTG
GTGTGGTGTAGTGGTGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAGCTTTTCTGCTGGC
TCAGCGTTTCAGGCAGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCCGCAGGCGGTTCGG
GCGCAGTAGCCGGGCGCAGCGGCTTAGAGGGGTGGTGGCTGTTGGTGGCTGTTGGTGGGGTGCGG
TGGTGGCCAGTGTGTGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCTATCTCTA
GCCAAGCATCGAAGAGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGTAGTCTTT
TAGGGCACACGATCACCGCAATGTCACCGCAATGTCAACGCACTGTCACCCCTGTCATGGCACTG
TCATCCCTGTCACCACACTGGTACCACACTGTCACCACCACCTCA
Found at i:32493 original size:10 final size:10
Alignment explanation
Indices: 32478--32503 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32468 CTTAGAGGGG
32478 TGGTGGCTGT
1 TGGTGGCTGT
32488 TGGTGGCTGT
1 TGGTGGCTGT
32498 TGGTGG
1 TGGTGG
32504 GGTGCGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.54, T:0.38
Consensus pattern (10 bp):
TGGTGGCTGT
Left flanking sequence: Indices 31978 -- 32477
GGGCCTCGAGGGGCTTCGAGTAGGGCTCCAACCACGGGTCGAGCTGCAACGCTCCTTTGATCAAG
TCAGACATGCCAATTGGGTGTAGAGAGCTGGCCAAAGGGGATAGTGGGTGAGCAATTGGCCAGAA
GCTTAATGGGGGGTACTTTATAGTGGTGAGATAGTCGGGCTGTGTGCAGTACTGCGGGGCACGCC
TTGCTCGGAGGGAAGCAGACCGGAGGAGGAGGAAGGAGGGAGGAGAGGGAAGAGAGGGAGGAGGA
GGAGGGAGGAGGAAGGAGGAGGGAAGGGAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTG
GAGTGGTGGGGTGGTGTGGTGTAGTGGTGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAG
CTTTTCTGCTGGCTCAGCGTTTCAGGCAGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCC
GCAGGCGGTTCGGGCGCAGTAGCCGGGCGCAGCGGCTTAGAGGGG
Right flanking sequence: Indices 32504 -- 33003
GGTGCGGTGGTGGCCAGTGTGTGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCT
ATCTCTAGCCAAGCATCGAAGAGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGT
AGTCTTTTAGGGCACACGATCACCGCAATGTCACCGCAATGTCAACGCACTGTCACCCCTGTCAT
GGCACTGTCATCCCTGTCACCACACTGGTACCACACTGTCACCACCACCTCACCTACGCTTCTTT
AGTCATAAATGAGTATTGTGAAAAGTAGTGCTATCCAGGTCAATGGTTACTATTGCTTTCTGCTC
TTGGTCATTTCAACAAGGCCATCAGCTCTTATCCACATTTCCAAGTAGTAACACGGATTGGTGTT
CATCTTTACTGTCTGTTCTGAGACAAACTTACGATCATTGACGAATGTGCATTATTGACTGTCAG
TGTCACCTGCGCGGTCAAGAATGTCCAGGGTTGTGGTATCTTGAC
Found at i:32669 original size:11 final size:11
Alignment explanation
Indices: 32653--32690 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
32643 GGGCACACGA
32653 TCACCGCAATG
1 TCACCGCAATG
32664 TCACCGCAATG
1 TCACCGCAATG
* *
32675 TCAACGCACTG
1 TCACCGCAATG
32686 TCACC
1 TCACC
32691 CCTGTCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.39, G:0.16, T:0.18
Consensus pattern (11 bp):
TCACCGCAATG
Left flanking sequence: Indices 32153 -- 32652
GCAGTACTGCGGGGCACGCCTTGCTCGGAGGGAAGCAGACCGGAGGAGGAGGAAGGAGGGAGGAG
AGGGAAGAGAGGGAGGAGGAGGAGGGAGGAGGAAGGAGGAGGGAAGGGAAGGGAAGTGGTAGAAG
AAGAGCAATGGTGTGTGGTGGAGTGGTGGGGTGGTGTGGTGTAGTGGTGTGGAGGCCGTAGAGGT
AGCGTTGGTCGCAGCAAGAGCTTTTCTGCTGGCTCAGCGTTTCAGGCAGACGCAGAGAATCACGA
GATCTAAAGCACCAGGAGCCGCAGGCGGTTCGGGCGCAGTAGCCGGGCGCAGCGGCTTAGAGGGG
TGGTGGCTGTTGGTGGCTGTTGGTGGGGTGCGGTGGTGGCCAGTGTGTGCCGGTGTGGGTCTGTT
GGGCTCTTCACAATTTTGCTGGCTCTATCTCTAGCCAAGCATCGAAGAGGAAATGTTGGGAGAAA
GTGGTCGTTGGCTAAGTAGTCTTGGTAGTCTTTTAGGGCACACGA
Right flanking sequence: Indices 32691 -- 33190
CCTGTCATGGCACTGTCATCCCTGTCACCACACTGGTACCACACTGTCACCACCACCTCACCTAC
GCTTCTTTAGTCATAAATGAGTATTGTGAAAAGTAGTGCTATCCAGGTCAATGGTTACTATTGCT
TTCTGCTCTTGGTCATTTCAACAAGGCCATCAGCTCTTATCCACATTTCCAAGTAGTAACACGGA
TTGGTGTTCATCTTTACTGTCTGTTCTGAGACAAACTTACGATCATTGACGAATGTGCATTATTG
ACTGTCAGTGTCACCTGCGCGGTCAAGAATGTCCAGGGTTGTGGTATCTTGACGGTTTCCTTCCC
TGACTTTTTCACACGATAGACCATGTTGAAGAGTAGTGCTATCCAGGTCAGTAACCTGGTCACTA
GTTGGTGGAGGATGCTTTCTAGGCATTAGCGTATCGCCACGGTTGAGAGTGCTTATGATTTGTGT
TGAAACCTGACTTGAGACCCGATCTCGGAGTCAGAAGCCAAGGGG
Found at i:32703 original size:20 final size:20
Alignment explanation
Indices: 32680--32717 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32670 CAATGTCAAC
32680 GCACTGTCACCCCTGTCATG
1 GCACTGTCACCCCTGTCATG
*
32700 GCACTGTCATCCCTGTCA
1 GCACTGTCACCCCTGTCA
32718 CCACACTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.39, G:0.18, T:0.26
Consensus pattern (20 bp):
GCACTGTCACCCCTGTCATG
Left flanking sequence: Indices 32180 -- 32679
GAGGGAAGCAGACCGGAGGAGGAGGAAGGAGGGAGGAGAGGGAAGAGAGGGAGGAGGAGGAGGGA
GGAGGAAGGAGGAGGGAAGGGAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTGGAGTGGT
GGGGTGGTGTGGTGTAGTGGTGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAGCTTTTCT
GCTGGCTCAGCGTTTCAGGCAGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCCGCAGGCG
GTTCGGGCGCAGTAGCCGGGCGCAGCGGCTTAGAGGGGTGGTGGCTGTTGGTGGCTGTTGGTGGG
GTGCGGTGGTGGCCAGTGTGTGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCTA
TCTCTAGCCAAGCATCGAAGAGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGTA
GTCTTTTAGGGCACACGATCACCGCAATGTCACCGCAATGTCAAC
Right flanking sequence: Indices 32718 -- 33217
CCACACTGGTACCACACTGTCACCACCACCTCACCTACGCTTCTTTAGTCATAAATGAGTATTGT
GAAAAGTAGTGCTATCCAGGTCAATGGTTACTATTGCTTTCTGCTCTTGGTCATTTCAACAAGGC
CATCAGCTCTTATCCACATTTCCAAGTAGTAACACGGATTGGTGTTCATCTTTACTGTCTGTTCT
GAGACAAACTTACGATCATTGACGAATGTGCATTATTGACTGTCAGTGTCACCTGCGCGGTCAAG
AATGTCCAGGGTTGTGGTATCTTGACGGTTTCCTTCCCTGACTTTTTCACACGATAGACCATGTT
GAAGAGTAGTGCTATCCAGGTCAGTAACCTGGTCACTAGTTGGTGGAGGATGCTTTCTAGGCATT
AGCGTATCGCCACGGTTGAGAGTGCTTATGATTTGTGTTGAAACCTGACTTGAGACCCGATCTCG
GAGTCAGAAGCCAAGGGGCTGAAGGCACCGTTGGGAGTTCTCCAA
Found at i:32724 original size:20 final size:20
Alignment explanation
Indices: 32681--32743 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 20
32671 AATGTCAACG
***
32681 CACTGTCACCCCTGTCATGG
1 CACTGTCACCCCTGTCACCA
*
32701 CACTGTCATCCCTGTCACCA
1 CACTGTCACCCCTGTCACCA
32721 CACTGGT-ACCACACTGTCACCA
1 CACT-GTCACC-C-CTGTCACCA
32743 C
1 C
32744 CACCTCACCT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 22 0.63
21 3 0.09
22 10 0.29
ACGTcount: A:0.21, C:0.43, G:0.14, T:0.22
Consensus pattern (20 bp):
CACTGTCACCCCTGTCACCA
Left flanking sequence: Indices 32181 -- 32680
AGGGAAGCAGACCGGAGGAGGAGGAAGGAGGGAGGAGAGGGAAGAGAGGGAGGAGGAGGAGGGAG
GAGGAAGGAGGAGGGAAGGGAAGGGAAGTGGTAGAAGAAGAGCAATGGTGTGTGGTGGAGTGGTG
GGGTGGTGTGGTGTAGTGGTGTGGAGGCCGTAGAGGTAGCGTTGGTCGCAGCAAGAGCTTTTCTG
CTGGCTCAGCGTTTCAGGCAGACGCAGAGAATCACGAGATCTAAAGCACCAGGAGCCGCAGGCGG
TTCGGGCGCAGTAGCCGGGCGCAGCGGCTTAGAGGGGTGGTGGCTGTTGGTGGCTGTTGGTGGGG
TGCGGTGGTGGCCAGTGTGTGCCGGTGTGGGTCTGTTGGGCTCTTCACAATTTTGCTGGCTCTAT
CTCTAGCCAAGCATCGAAGAGGAAATGTTGGGAGAAAGTGGTCGTTGGCTAAGTAGTCTTGGTAG
TCTTTTAGGGCACACGATCACCGCAATGTCACCGCAATGTCAACG
Right flanking sequence: Indices 32744 -- 33243
CACCTCACCTACGCTTCTTTAGTCATAAATGAGTATTGTGAAAAGTAGTGCTATCCAGGTCAATG
GTTACTATTGCTTTCTGCTCTTGGTCATTTCAACAAGGCCATCAGCTCTTATCCACATTTCCAAG
TAGTAACACGGATTGGTGTTCATCTTTACTGTCTGTTCTGAGACAAACTTACGATCATTGACGAA
TGTGCATTATTGACTGTCAGTGTCACCTGCGCGGTCAAGAATGTCCAGGGTTGTGGTATCTTGAC
GGTTTCCTTCCCTGACTTTTTCACACGATAGACCATGTTGAAGAGTAGTGCTATCCAGGTCAGTA
ACCTGGTCACTAGTTGGTGGAGGATGCTTTCTAGGCATTAGCGTATCGCCACGGTTGAGAGTGCT
TATGATTTGTGTTGAAACCTGACTTGAGACCCGATCTCGGAGTCAGAAGCCAAGGGGCTGAAGGC
ACCGTTGGGAGTTCTCCAATCGTTCTGCCATGGTGGATTTCTTAC
Done.