sallet_3.scaffold.fasta.s35.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold54
Parameters: 2 7 7 80 10 50 500
Length:  68423

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068--1092	12	2.1	12	100	0	50	16	60	16	8	1.58
1328--1370	19	2.3	18	92	4	68	0	58	9	32	1.30
1328--1370	9	4.7	9	91	5	68	0	58	9	32	1.30
1365--1408	19	2.4	19	88	3	63	0	47	6	45	1.29
1377--1431	24	2.3	23	76	14	58	0	50	10	38	1.37
1627--1654	11	2.5	11	100	0	56	28	42	10	17	1.83
3995--4037	22	1.9	23	81	13	54	37	2	46	13	1.57
4490--4813	91	3.6	91	80	12	373	20	15	22	40	1.90
4490--4819	177	1.9	178	85	3	468	20	15	23	40	1.90
4876--4974	50	2.0	51	91	2	164	18	16	28	37	1.92
4874--4961	24	3.6	24	64	27	58	20	15	23	39	1.91
6921--6962	21	2.0	21	86	9	59	30	30	21	16	1.95
6929--6974	11	4.4	11	86	8	69	28	26	23	21	1.99
6972--7077	26	3.9	28	79	10	107	34	27	24	13	1.92
6977--7077	14	7.5	13	77	14	91	34	27	25	11	1.91
6972--7077	54	2.0	53	82	14	128	34	27	24	13	1.92
7205--7251	10	4.7	10	83	0	67	12	63	0	23	1.28
7196--7239	20	2.2	20	96	4	81	11	68	0	20	1.20
8193--8222	12	2.5	12	94	0	51	50	23	26	0	1.50
12501--12531	15	2.1	15	93	0	53	32	22	29	16	1.95
15528--15553	13	2.0	13	100	0	52	15	30	15	38	1.88
18420--18461	13	3.2	13	93	3	66	50	7	38	4	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18420--18466	13	3.5	14	91	2	62	48	6	40	4	1.48
18774--18800	12	2.2	12	100	0	54	0	22	55	22	1.44
19069--19108	12	3.3	12	89	0	62	2	32	35	30	1.71
19148--19181	9	3.8	9	100	0	68	0	35	29	35	1.58
20337--20381	11	4.0	12	77	16	51	6	8	53	31	1.58
20338--20403	12	5.8	12	73	8	57	4	9	54	31	1.52
20685--20717	15	2.2	15	100	0	66	54	33	0	12	1.37
23372--23410	6	6.5	6	88	11	62	48	0	51	0	1.00
23372--23440	24	2.9	23	84	4	75	42	4	52	1	1.30
23377--23411	18	1.9	18	100	0	70	48	0	51	0	1.00
23414--23464	18	2.8	18	93	0	75	37	13	49	0	1.43
23420--23475	6	9.3	6	76	7	51	41	14	44	0	1.45
24101--24374	100	2.7	102	80	10	314	37	8	29	24	1.85
24518--24560	22	2.0	22	86	9	61	32	30	6	30	1.84
25420--25494	34	2.2	35	90	2	116	21	21	21	36	1.96
29415--29449	15	2.3	15	90	0	52	14	45	28	11	1.79
29627--29682	14	3.7	15	79	11	51	50	33	14	1	1.53
29627--29689	15	4.1	15	80	10	56	46	34	17	1	1.58
30303--30343	11	3.8	11	93	3	66	19	60	0	19	1.36
30303--30343	21	1.9	21	90	5	64	19	60	0	19	1.36
30824--30894	21	3.4	21	92	0	106	21	49	25	4	1.67
33604--33696	21	4.5	21	87	5	127	17	19	50	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34973--35015	8	5.4	8	88	0	50	2	0	67	30	1.03
34972--35008	13	2.8	13	87	4	56	0	0	72	27	0.84
35025--35074	20	2.5	20	87	6	66	28	12	40	20	1.87
35133--35181	15	3.4	15	80	11	66	10	8	38	42	1.68
35140--35201	28	2.2	28	83	11	74	9	11	40	38	1.74
35373--35402	8	3.8	8	95	0	51	26	43	0	30	1.55
35397--35453	12	4.8	12	97	0	105	33	52	0	14	1.41
35539--35567	15	1.9	15	100	0	58	31	48	6	13	1.69
36447--36509	12	4.9	13	73	21	53	22	60	14	3	1.48
36447--36500	28	1.9	28	92	7	92	22	61	14	1	1.43
38148--38186	10	3.9	10	96	0	69	10	28	48	12	1.74
38146--38195	20	2.5	20	86	0	73	14	28	44	14	1.83
39094--39144	13	3.8	13	75	17	50	0	31	1	66	1.03
39097--39144	21	2.3	21	82	3	62	0	31	2	66	1.03
42234--42305	21	3.2	21	83	14	99	18	19	41	20	1.90
54022--54078	15	3.8	15	79	4	62	15	1	61	21	1.43
68266--68320	28	2.0	28	92	0	92	27	18	29	25	1.98

Tables:   1

The End!