Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold54
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 68423
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1085 original size:12 final size:12
Alignment explanation
Indices: 1068--1092 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1058 CTCCTCGTCT
1068 CCGTAGCCACCC
1 CCGTAGCCACCC
1080 CCGTAGCCACCC
1 CCGTAGCCACCC
1092 C
1 C
1093 ACCCGTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.60, G:0.16, T:0.08
Consensus pattern (12 bp):
CCGTAGCCACCC
Left flanking sequence: Indices 568 -- 1067
GTTATCTTATCACTTACGTCAGCAACTATCGAAGGTGGCAGTGTGGGCCAGGCAACCACCACCGG
GTCACCGCTTTAACGCAATTGGCAATGACAACAAGGGTCTAAGGTCTCCAGACCAACGATAGCTC
ACATTACAACGCCAGCTACACTACACCGCCCTCACGCTTCACCGTCCGCTACACTACAACCCAAC
CGCACCCAGTCGCGGCTGGGACGGCCACAAAACCAACCCGAGAACGTGAAATTGACAATGACCGC
CCGCCCAGACCGTACAAGCCGGTGCTTGGGCCACACGAGCCCAGCCAACACCCAGACGCCCAAAC
CGTCTACTCCGACTACGCCACCAGACTACAAAGTCCCGCCCATGTATACCCCACTCAGATCTCGC
TATATGCGATCCAGATGATCCCAAGGGATCGTCCCCACCAACAACCCACCACCTTGAACCTTCTC
TAGCCACCGTTCTTTAGTCACCCACCGTAGCTACTCTCCTCGTCT
Right flanking sequence: Indices 1093 -- 1592
ACCCGTCCATTTCCCTCCACCCCTCCCTCCGTCCCTTACCCCTCGTCTCCTCTACGCCCACATGG
CCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTTCGGAGTCAATCGCC
GACACGTCGAGCGCCACCCAACGGCTCACAAGGCCACCAGAGCACACCGTCTCCACAGTGTCGCT
CCTACCACCCTTCCGCTTCTCCTCTACTCCTCCTCCACTTCTCCTCCGCCTCCTCTCGCCTCCTT
CGCCTCCTTCGCCTCCTTTTCTCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTCGCCTTCTCC
GCCGCGCCTTCCTTTCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGG
ACAGGTCTGTACCCCAGCGACAGGACACCGGCAGGTACGCGACAGCTACACCAACAGGCACACCA
ACAGGTAACAGATTAAATCAAAAACAACCCAAAAAGCATGACCAC
Found at i:1356 original size:19 final size:18
Alignment explanation
Indices: 1328--1370 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
1318 TCCTCCACTT
*
1328 CTCCTCCGCCTCCTCTCGC
1 CTCCTTCGCCTCCT-TCGC
1347 CTCCTTCGCCTCCTTCGC
1 CTCCTTCGCCTCCTTCGC
1365 CTCCTT
1 CTCCTT
1371 TTCTCGCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.00, C:0.58, G:0.09, T:0.33
Consensus pattern (18 bp):
CTCCTTCGCCTCCTTCGC
Left flanking sequence: Indices 828 -- 1327
CCGCCCAGACCGTACAAGCCGGTGCTTGGGCCACACGAGCCCAGCCAACACCCAGACGCCCAAAC
CGTCTACTCCGACTACGCCACCAGACTACAAAGTCCCGCCCATGTATACCCCACTCAGATCTCGC
TATATGCGATCCAGATGATCCCAAGGGATCGTCCCCACCAACAACCCACCACCTTGAACCTTCTC
TAGCCACCGTTCTTTAGTCACCCACCGTAGCTACTCTCCTCGTCTCCGTAGCCACCCCCGTAGCC
ACCCCACCCGTCCATTTCCCTCCACCCCTCCCTCCGTCCCTTACCCCTCGTCTCCTCTACGCCCA
CATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTTCGGAGTCAA
TCGCCGACACGTCGAGCGCCACCCAACGGCTCACAAGGCCACCAGAGCACACCGTCTCCACAGTG
TCGCTCCTACCACCCTTCCGCTTCTCCTCTACTCCTCCTCCACTT
Right flanking sequence: Indices 1371 -- 1870
TTCTCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTCGCCTTCTCCGCCGCGCCTTCCTTTCTC
GGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGGACAGGTCTGTACCCCAGC
GACAGGACACCGGCAGGTACGCGACAGCTACACCAACAGGCACACCAACAGGTAACAGATTAAAT
CAAAAACAACCCAAAAAGCATGACCACTCCTCTCTCTCAAAACACCCACTATAAATACACGGCCA
ATCCACTGCCAATCCACTGCCAATTCCCAGCCACCATGTTTTTTCCACCTTTTCTGGTTAATTCC
GGATCATATGCACTTTGAATTGCGGGGTCGCCACGCACTTAAATAGTCCGAGGCTCCACCACCAC
CAACCAACCAGTCGTCCACCACCAGCCACCTCTTCATCCACCATGGCTGACATTACCGTCGACGA
CTACCACCTCGACGTGTACATGCGGTTCGCCGACGGGCTCATCCA
Found at i:1370 original size:9 final size:9
Alignment explanation
Indices: 1328--1370 Score: 68
Period size: 9 Copynumber: 4.7 Consensus size: 9
1318 TCCTCCACTT
*
1328 CTCCTCCGC
1 CTCCTTCGC
1337 CTCCTCTCGC
1 CTCCT-TCGC
1347 CTCCTTCGC
1 CTCCTTCGC
1356 CTCCTTCGC
1 CTCCTTCGC
1365 CTCCTT
1 CTCCTT
1371 TTCTCGCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 24 0.75
10 8 0.25
ACGTcount: A:0.00, C:0.58, G:0.09, T:0.33
Consensus pattern (9 bp):
CTCCTTCGC
Left flanking sequence: Indices 828 -- 1327
CCGCCCAGACCGTACAAGCCGGTGCTTGGGCCACACGAGCCCAGCCAACACCCAGACGCCCAAAC
CGTCTACTCCGACTACGCCACCAGACTACAAAGTCCCGCCCATGTATACCCCACTCAGATCTCGC
TATATGCGATCCAGATGATCCCAAGGGATCGTCCCCACCAACAACCCACCACCTTGAACCTTCTC
TAGCCACCGTTCTTTAGTCACCCACCGTAGCTACTCTCCTCGTCTCCGTAGCCACCCCCGTAGCC
ACCCCACCCGTCCATTTCCCTCCACCCCTCCCTCCGTCCCTTACCCCTCGTCTCCTCTACGCCCA
CATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTTCGGAGTCAA
TCGCCGACACGTCGAGCGCCACCCAACGGCTCACAAGGCCACCAGAGCACACCGTCTCCACAGTG
TCGCTCCTACCACCCTTCCGCTTCTCCTCTACTCCTCCTCCACTT
Right flanking sequence: Indices 1371 -- 1870
TTCTCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTCGCCTTCTCCGCCGCGCCTTCCTTTCTC
GGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGGACAGGTCTGTACCCCAGC
GACAGGACACCGGCAGGTACGCGACAGCTACACCAACAGGCACACCAACAGGTAACAGATTAAAT
CAAAAACAACCCAAAAAGCATGACCACTCCTCTCTCTCAAAACACCCACTATAAATACACGGCCA
ATCCACTGCCAATCCACTGCCAATTCCCAGCCACCATGTTTTTTCCACCTTTTCTGGTTAATTCC
GGATCATATGCACTTTGAATTGCGGGGTCGCCACGCACTTAAATAGTCCGAGGCTCCACCACCAC
CAACCAACCAGTCGTCCACCACCAGCCACCTCTTCATCCACCATGGCTGACATTACCGTCGACGA
CTACCACCTCGACGTGTACATGCGGTTCGCCGACGGGCTCATCCA
Found at i:1403 original size:18 final size:19
Alignment explanation
Indices: 1365--1408 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
1355 CCTCCTTCGC
* *
1365 CTCCTTTTCTCGCTTCCTT
1 CTCCTTCTCTCGCTGCCTT
1384 CTCCTTCTCTCGC-GCCTT
1 CTCCTTCTCTCGCTGCCTT
1402 CTCCTTC
1 CTCCTTC
1409 GCCTTCTCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.00, C:0.48, G:0.07, T:0.45
Consensus pattern (19 bp):
CTCCTTCTCTCGCTGCCTT
Left flanking sequence: Indices 865 -- 1364
AGCCCAGCCAACACCCAGACGCCCAAACCGTCTACTCCGACTACGCCACCAGACTACAAAGTCCC
GCCCATGTATACCCCACTCAGATCTCGCTATATGCGATCCAGATGATCCCAAGGGATCGTCCCCA
CCAACAACCCACCACCTTGAACCTTCTCTAGCCACCGTTCTTTAGTCACCCACCGTAGCTACTCT
CCTCGTCTCCGTAGCCACCCCCGTAGCCACCCCACCCGTCCATTTCCCTCCACCCCTCCCTCCGT
CCCTTACCCCTCGTCTCCTCTACGCCCACATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCT
GCACTCCCGCGCCGGGCTTCGGAGTCAATCGCCGACACGTCGAGCGCCACCCAACGGCTCACAAG
GCCACCAGAGCACACCGTCTCCACAGTGTCGCTCCTACCACCCTTCCGCTTCTCCTCTACTCCTC
CTCCACTTCTCCTCCGCCTCCTCTCGCCTCCTTCGCCTCCTTCGC
Right flanking sequence: Indices 1409 -- 1908
GCCTTCTCCGCCGCGCCTTCCTTTCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAG
TACCCCGGGACAGGTCTGTACCCCAGCGACAGGACACCGGCAGGTACGCGACAGCTACACCAACA
GGCACACCAACAGGTAACAGATTAAATCAAAAACAACCCAAAAAGCATGACCACTCCTCTCTCTC
AAAACACCCACTATAAATACACGGCCAATCCACTGCCAATCCACTGCCAATTCCCAGCCACCATG
TTTTTTCCACCTTTTCTGGTTAATTCCGGATCATATGCACTTTGAATTGCGGGGTCGCCACGCAC
TTAAATAGTCCGAGGCTCCACCACCACCAACCAACCAGTCGTCCACCACCAGCCACCTCTTCATC
CACCATGGCTGACATTACCGTCGACGACTACCACCTCGACGTGTACATGCGGTTCGCCGACGGGC
TCATCCACGAGGTGAGTGCCGAGCAGATCCGCCCGCACTTGGACC
Found at i:1430 original size:24 final size:23
Alignment explanation
Indices: 1377--1431 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
1367 CCTTTTCTCG
*
1377 CTTCCTTCTCCTTCTCTCGCGCC
1 CTTCCTTCGCCTTCTCTCGCGCC
*
1400 TTCTCCTTCGCCTTCTC-CGCCGCGC
1 CT-TCCTTCGCCTTCTCTCG-CGC-C
1425 CTTCCTT
1 CTTCCTT
1432 TCTCGGACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.12
24 21 0.81
25 2 0.08
ACGTcount: A:0.00, C:0.51, G:0.11, T:0.38
Consensus pattern (23 bp):
CTTCCTTCGCCTTCTCTCGCGCC
Left flanking sequence: Indices 877 -- 1376
ACCCAGACGCCCAAACCGTCTACTCCGACTACGCCACCAGACTACAAAGTCCCGCCCATGTATAC
CCCACTCAGATCTCGCTATATGCGATCCAGATGATCCCAAGGGATCGTCCCCACCAACAACCCAC
CACCTTGAACCTTCTCTAGCCACCGTTCTTTAGTCACCCACCGTAGCTACTCTCCTCGTCTCCGT
AGCCACCCCCGTAGCCACCCCACCCGTCCATTTCCCTCCACCCCTCCCTCCGTCCCTTACCCCTC
GTCTCCTCTACGCCCACATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGC
CGGGCTTCGGAGTCAATCGCCGACACGTCGAGCGCCACCCAACGGCTCACAAGGCCACCAGAGCA
CACCGTCTCCACAGTGTCGCTCCTACCACCCTTCCGCTTCTCCTCTACTCCTCCTCCACTTCTCC
TCCGCCTCCTCTCGCCTCCTTCGCCTCCTTCGCCTCCTTTTCTCG
Right flanking sequence: Indices 1432 -- 1931
TCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGGACAGGTCTGTACCC
CAGCGACAGGACACCGGCAGGTACGCGACAGCTACACCAACAGGCACACCAACAGGTAACAGATT
AAATCAAAAACAACCCAAAAAGCATGACCACTCCTCTCTCTCAAAACACCCACTATAAATACACG
GCCAATCCACTGCCAATCCACTGCCAATTCCCAGCCACCATGTTTTTTCCACCTTTTCTGGTTAA
TTCCGGATCATATGCACTTTGAATTGCGGGGTCGCCACGCACTTAAATAGTCCGAGGCTCCACCA
CCACCAACCAACCAGTCGTCCACCACCAGCCACCTCTTCATCCACCATGGCTGACATTACCGTCG
ACGACTACCACCTCGACGTGTACATGCGGTTCGCCGACGGGCTCATCCACGAGGTGAGTGCCGAG
CAGATCCGCCCGCACTTGGACCCGGGCTTCCCCCAGGACCGCCTC
Found at i:1643 original size:11 final size:11
Alignment explanation
Indices: 1627--1654 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1617 TAAATACACG
1627 GCCAATCCACT
1 GCCAATCCACT
1638 GCCAATCCACT
1 GCCAATCCACT
1649 GCCAAT
1 GCCAAT
1655 TCCCAGCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.43, G:0.11, T:0.18
Consensus pattern (11 bp):
GCCAATCCACT
Left flanking sequence: Indices 1127 -- 1626
CTTACCCCTCGTCTCCTCTACGCCCACATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGC
ACTCCCGCGCCGGGCTTCGGAGTCAATCGCCGACACGTCGAGCGCCACCCAACGGCTCACAAGGC
CACCAGAGCACACCGTCTCCACAGTGTCGCTCCTACCACCCTTCCGCTTCTCCTCTACTCCTCCT
CCACTTCTCCTCCGCCTCCTCTCGCCTCCTTCGCCTCCTTCGCCTCCTTTTCTCGCTTCCTTCTC
CTTCTCTCGCGCCTTCTCCTTCGCCTTCTCCGCCGCGCCTTCCTTTCTCGGACACGTCCCGATCG
GGAAATAGACGCGACGCACCAGTACCCCGGGACAGGTCTGTACCCCAGCGACAGGACACCGGCAG
GTACGCGACAGCTACACCAACAGGCACACCAACAGGTAACAGATTAAATCAAAAACAACCCAAAA
AGCATGACCACTCCTCTCTCTCAAAACACCCACTATAAATACACG
Right flanking sequence: Indices 1655 -- 2154
TCCCAGCCACCATGTTTTTTCCACCTTTTCTGGTTAATTCCGGATCATATGCACTTTGAATTGCG
GGGTCGCCACGCACTTAAATAGTCCGAGGCTCCACCACCACCAACCAACCAGTCGTCCACCACCA
GCCACCTCTTCATCCACCATGGCTGACATTACCGTCGACGACTACCACCTCGACGTGTACATGCG
GTTCGCCGACGGGCTCATCCACGAGGTGAGTGCCGAGCAGATCCGCCCGCACTTGGACCCGGGCT
TCCCCCAGGACCGCCTCGACGAGTACTTGCAGACCTACCAGAAGCCGAGCCAGATCCCGGGCTTC
CGCGAGGCGGTCCGTGGCACCATCAACCGCTCCAACGTCAAGCTGATCAAGAACTTCCGGATGAT
CATGGCCATCTTGGACACCCGGGTCACCGCCCCGTTGCTCACCAACCTGCTCCAGTTGGCCCGCG
ACATGTCCGACACCGAGCGCGAGCAGCTCTTGACCGCGTGGCGAG
Found at i:4020 original size:22 final size:23
Alignment explanation
Indices: 3995--4037 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
3985 GGGTTAAAAG
3995 GTAGGA-ATGGGGAA-GAAGGATT
1 GTAGGACA-GGGGAAGGAAGGATT
*
4017 GTAGTACAGGGGAAGGAAGGA
1 GTAGGACAGGGGAAGGAAGGA
4038 AGTGCAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.37, C:0.02, G:0.47, T:0.14
Consensus pattern (23 bp):
GTAGGACAGGGGAAGGAAGGATT
Left flanking sequence: Indices 3495 -- 3994
AAGGCCGGGTTGTTGGCTGCGGACATGCTCTACATCGAGGGGGCGCTTGAGATCATTCCCCCCGA
GTCGCTGATGCCCACGTTCACGCTGAACAAGCCCAAGCACGCGCGCAACATCACCGACGCCGACT
ACCAGCAGTGGAAGACCACGGTGGCGCGGATGGAGTTCCGTCCGTGGACGACGCAGTTTGCGCTG
GCCCACCAGATGTCGCTGTGCCGGATGGCGCTGTCGCTGAAGAAGGGGGCGTGTGACACCCGTGG
CAAGCTCTGGGAGTGTAGCAACGTGTGGGTGGCGGACGCGCTGGCGTTGCCCACGGCGCTGGGGG
TGAACCCGATGGTGCTGACGATGGCGGTGGCCCGGCACAATGCGTTGGAGCTTGCGAAGGAGTTG
AGACCCGGGCCGAAGCTTTAGAGAAGGGGTGTTTAGAGGTAAAGGTATTAGAGGTGGTTTCGAGG
TATTAGAGGTAATGTATGGATATGAAGGAGAAGTAGGGTTAAAAG
Right flanking sequence: Indices 4038 -- 4537
AGTGCAGTTGTGTTGCGACCAGACATCAGGGTCTGAAGAGGGACTGAAGGCACCGGATGTGAATT
TTTTGTCGTTCTGCCATGGTGGATTTCCAGGGTAGATTTCTTAGCCATGGTGAATTTCCTTCTTA
GTCATGGTATTTCTCAGGTCGAAGGGTACAAAATGCGTTATGGAGGCTGAAATAATGGTTTAGTT
GTTGTTGACATAATGGCAGAAGTGTTGTAATTCTATTGATCTAGGTTCTGGTTGGACTTAAATAT
GACACGGCTGGGCTTTTTGCAGCCGCTTATATGCAGGTCGCGTTGGTGGTGGAAACATGGTCCCA
ACGTATCGACCTAGGAGGTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTA
TGAGTAGAATGGTGTTGTTTTCACGGTATTTGGCAGACTGTAGTGCAAGATTCAACACGCATGTC
TCGACTCGTGGTTAGAATCTTAATCCGTCATTTGGCTAGAATCTT
Found at i:4788 original size:91 final size:91
Alignment explanation
Indices: 4490--4813 Score: 373
Period size: 91 Copynumber: 3.6 Consensus size: 91
4480 CAACACGCAT
* * * *
4490 GTCTCGACTCGTGGTTAGAATCTTAATCCGTCATTTGGCTAGAATC-TTTGGCATTGGTGGCGGG
1 GTCTTGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCA-T--TGGCGGG
* * **
4554 TTAGAATCTTTTCTAATTGATATTTTATTA
63 TTAGGATCTTTTCTAACTGA-ATTTGGTTA
* *
4584 GTCTTGAC-CTTGGTTAGAATCTTGATCCGACATTTGGCTAGAATCTTTTGGCATTGGTGCAGGG
1 GTCTTGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCATT-G-GC-GGG
4648 TTA-GA--TTTT-T--CTG--TTTGGTTA
63 TTAGGATCTTTTCTAACTGAATTTGGTTA
* *
4669 GTCTTGACTCTTGATTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGTATTGGC-GGTTA
1 GTCTTGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCATTGGCGGGTTA
*
4733 GGATCTTTTCTAACTGACATTTGGTGA
66 GGATCTTTTCTAACTGA-ATTTGGTTA
*
4760 GTTTTGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCA
1 GTCTTGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCA
4814 ATGGTGTCGG
Statistics
Matches: 200, Mismatches: 16, Indels: 31
0.81 0.06 0.13
Matches are distributed among these distances:
82 5 0.03
83 2 0.01
84 2 0.01
85 19 0.09
86 44 0.22
88 5 0.03
90 1 0.00
91 63 0.31
92 1 0.00
93 38 0.19
94 20 0.10
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.41
Consensus pattern (91 bp):
GTCTTGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCATTGGCGGGTTA
GGATCTTTTCTAACTGAATTTGGTTA
Left flanking sequence: Indices 3990 -- 4489
AAAAGGTAGGAATGGGGAAGAAGGATTGTAGTACAGGGGAAGGAAGGAAGTGCAGTTGTGTTGCG
ACCAGACATCAGGGTCTGAAGAGGGACTGAAGGCACCGGATGTGAATTTTTTGTCGTTCTGCCAT
GGTGGATTTCCAGGGTAGATTTCTTAGCCATGGTGAATTTCCTTCTTAGTCATGGTATTTCTCAG
GTCGAAGGGTACAAAATGCGTTATGGAGGCTGAAATAATGGTTTAGTTGTTGTTGACATAATGGC
AGAAGTGTTGTAATTCTATTGATCTAGGTTCTGGTTGGACTTAAATATGACACGGCTGGGCTTTT
TGCAGCCGCTTATATGCAGGTCGCGTTGGTGGTGGAAACATGGTCCCAACGTATCGACCTAGGAG
GTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTATGAGTAGAATGGTGTTG
TTTTCACGGTATTTGGCAGACTGTAGTGCAAGATTCAACACGCAT
Right flanking sequence: Indices 4814 -- 5313
ATGGTGTCGGGTAGTGCGTTGGTTGAGCAAGGAGTCTCCACATTTGGTTAGTCTAGACTCTTGGT
TAGAATCTTATTCCGACATTTGGCTAGAATCTTTTGGTATTGGCGGCAGGTTAGATCTTATTCCG
GCATTTGGCTAGAATCTTTTGGCGTTGGCGGGTAGAGCCTGGTTGGGCAAGGAGTCACCACCCTC
GGTCACCAGAGTCAAACCACACATACCACCACCCTATGGATTCCCCTCCCCTACTTTCGTAGTCT
CTCTCCTAGCAAATTGTTCGCTGTGGGTTTGATTCAGACGGCCGGTTGTGGTTCCCAAGTCTGTC
GAACAAGAGGTGGACACAGAAGTCTATCTCTGAACGAGCGTCTTGCTTCGACAGCACACTCACGG
TTTTAAATCTTTCTCAAACCTATCACCATATAGTCCCAATGGCAGGTATCTCAAACCTATCACCT
TACTTATATCTTATACACCCCAACCTCGTGACCCTTGCTAAATAC
Found at i:4802 original size:177 final size:178
Alignment explanation
Indices: 4490--4819 Score: 468
Period size: 177 Copynumber: 1.9 Consensus size: 178
4480 CAACACGCAT
* * *
4490 GTCTCGACTCGTGGTTAGAATCTTAATCCGTCATTTGGCTAGAATCTTTGGCATTGGTGGCGGGT
1 GTCTCGACTCGTGATTAGAATCTTAATCCGACATTCGGCTAGAATCTTTGGCATT-GTGGCGGGT
* * * * * *
4555 TAGAATCTTTTCTAATTGATATTTTATTAGTCTTGACCTTGGTTAGAATCTTGATCCGACATTTG
65 TAGAATCTTTTCTAACTGACATTTGATGAGTCTTGACCTTGGTTAGAATCTTAATCCGACATTCG
*
4620 GCTAGAATCTTTTGGCATTGGTGCAGGGTTAGATTTTTCTGTTTGGTTA
130 GCTAGAATCTTTTGGCAATGGTGCAGGGTTAGATTTTTCTGTTTGGTTA
* * *
4669 GTCTTGACTCTTGATTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGTA-T-TGGC-GGT
1 GTCTCGACTCGTGATTAGAATCTTAATCCGACATTCGGCTAGAATC-TTTGGCATTGTGGCGGGT
* * *
4731 TAGGATCTTTTCTAACTGACATTTGGTGAGTTTTGACTCTTGGTTAGAATCTTAATCCGACATTC
65 TAGAATCTTTTCTAACTGACATTTGATGAGTCTTGAC-CTTGGTTAGAATCTTAATCCGACATTC
4796 GGCTAGAATCTTTTGGCAATGGTG
129 GGCTAGAATCTTTTGGCAATGGTG
4820 TCGGGTAGTG
Statistics
Matches: 133, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
176 33 0.25
177 52 0.39
179 42 0.32
180 6 0.05
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.41
Consensus pattern (178 bp):
GTCTCGACTCGTGATTAGAATCTTAATCCGACATTCGGCTAGAATCTTTGGCATTGTGGCGGGTT
AGAATCTTTTCTAACTGACATTTGATGAGTCTTGACCTTGGTTAGAATCTTAATCCGACATTCGG
CTAGAATCTTTTGGCAATGGTGCAGGGTTAGATTTTTCTGTTTGGTTA
Left flanking sequence: Indices 3990 -- 4489
AAAAGGTAGGAATGGGGAAGAAGGATTGTAGTACAGGGGAAGGAAGGAAGTGCAGTTGTGTTGCG
ACCAGACATCAGGGTCTGAAGAGGGACTGAAGGCACCGGATGTGAATTTTTTGTCGTTCTGCCAT
GGTGGATTTCCAGGGTAGATTTCTTAGCCATGGTGAATTTCCTTCTTAGTCATGGTATTTCTCAG
GTCGAAGGGTACAAAATGCGTTATGGAGGCTGAAATAATGGTTTAGTTGTTGTTGACATAATGGC
AGAAGTGTTGTAATTCTATTGATCTAGGTTCTGGTTGGACTTAAATATGACACGGCTGGGCTTTT
TGCAGCCGCTTATATGCAGGTCGCGTTGGTGGTGGAAACATGGTCCCAACGTATCGACCTAGGAG
GTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTATGAGTAGAATGGTGTTG
TTTTCACGGTATTTGGCAGACTGTAGTGCAAGATTCAACACGCAT
Right flanking sequence: Indices 4820 -- 5319
TCGGGTAGTGCGTTGGTTGAGCAAGGAGTCTCCACATTTGGTTAGTCTAGACTCTTGGTTAGAAT
CTTATTCCGACATTTGGCTAGAATCTTTTGGTATTGGCGGCAGGTTAGATCTTATTCCGGCATTT
GGCTAGAATCTTTTGGCGTTGGCGGGTAGAGCCTGGTTGGGCAAGGAGTCACCACCCTCGGTCAC
CAGAGTCAAACCACACATACCACCACCCTATGGATTCCCCTCCCCTACTTTCGTAGTCTCTCTCC
TAGCAAATTGTTCGCTGTGGGTTTGATTCAGACGGCCGGTTGTGGTTCCCAAGTCTGTCGAACAA
GAGGTGGACACAGAAGTCTATCTCTGAACGAGCGTCTTGCTTCGACAGCACACTCACGGTTTTAA
ATCTTTCTCAAACCTATCACCATATAGTCCCAATGGCAGGTATCTCAAACCTATCACCTTACTTA
TATCTTATACACCCCAACCTCGTGACCCTTGCTAAATACACCATG
Found at i:4939 original size:50 final size:51
Alignment explanation
Indices: 4876--4974 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 51
4866 CTAGACTCTT
*
4876 GGTTAGAATCTTATTCCGACATTTGGCTAGAATCTTTTGGTATTGGCGGCA
1 GGTTAGAATCTTATTCCGACATTTGGCTAGAATCTTTTGGCATTGGCGGCA
* *
4927 GGTTAG-ATCTTATTCCGGCATTTGGCTAGAATCTTTTGGCGTTGGCGG
1 GGTTAGAATCTTATTCCGACATTTGGCTAGAATCTTTTGGCATTGGCGG
4975 GTAGAGCCTG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
50 39 0.87
51 6 0.13
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.37
Consensus pattern (51 bp):
GGTTAGAATCTTATTCCGACATTTGGCTAGAATCTTTTGGCATTGGCGGCA
Left flanking sequence: Indices 4376 -- 4875
GGAGGTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTATGAGTAGAATGGT
GTTGTTTTCACGGTATTTGGCAGACTGTAGTGCAAGATTCAACACGCATGTCTCGACTCGTGGTT
AGAATCTTAATCCGTCATTTGGCTAGAATCTTTGGCATTGGTGGCGGGTTAGAATCTTTTCTAAT
TGATATTTTATTAGTCTTGACCTTGGTTAGAATCTTGATCCGACATTTGGCTAGAATCTTTTGGC
ATTGGTGCAGGGTTAGATTTTTCTGTTTGGTTAGTCTTGACTCTTGATTAGAATCTTAATCCGAC
ATTCGGCTAGAATCTTTTGGTATTGGCGGTTAGGATCTTTTCTAACTGACATTTGGTGAGTTTTG
ACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCAATGGTGTCGGGTAGTGC
GTTGGTTGAGCAAGGAGTCTCCACATTTGGTTAGTCTAGACTCTT
Right flanking sequence: Indices 4975 -- 5474
GTAGAGCCTGGTTGGGCAAGGAGTCACCACCCTCGGTCACCAGAGTCAAACCACACATACCACCA
CCCTATGGATTCCCCTCCCCTACTTTCGTAGTCTCTCTCCTAGCAAATTGTTCGCTGTGGGTTTG
ATTCAGACGGCCGGTTGTGGTTCCCAAGTCTGTCGAACAAGAGGTGGACACAGAAGTCTATCTCT
GAACGAGCGTCTTGCTTCGACAGCACACTCACGGTTTTAAATCTTTCTCAAACCTATCACCATAT
AGTCCCAATGGCAGGTATCTCAAACCTATCACCTTACTTATATCTTATACACCCCAACCTCGTGA
CCCTTGCTAAATACACCATGGTGTTAAACCTTCCATTCTCAATTCTCAACCCCATCACCGTATAG
TCCCAATTATAGGTGTTTCAAACCATCTATTCTCACATTCAACCTATCACCTTACCTATACCCTG
TACACCCCAACCTCATAACCCTTGCTCAATACACCACTGGTATCT
Found at i:4961 original size:24 final size:24
Alignment explanation
Indices: 4874--4961 Score: 58
Period size: 24 Copynumber: 3.6 Consensus size: 24
4864 GTCTAGACTC
* *
4874 TTGGTTAGAATCTTATTCCGACAT
1 TTGGCTAGAATCTTATTCCGGCAT
*
4898 TTGGCTAGAATCTT-TT--GGTA-
1 TTGGCTAGAATCTTATTCCGGCAT
*
4918 TTGGCGGCAGGTTAGATCTTATTCCGGCAT
1 TTGGC--TA-G--A-ATCTTATTCCGGCAT
4948 TTGGCTAGAATCTT
1 TTGGCTAGAATCTT
4962 TTGGCGTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 20
0.65 0.08 0.27
Matches are distributed among these distances:
20 5 0.10
21 2 0.04
22 1 0.02
23 3 0.06
24 18 0.38
25 2 0.04
26 5 0.10
27 3 0.06
28 1 0.02
29 3 0.06
30 5 0.10
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (24 bp):
TTGGCTAGAATCTTATTCCGGCAT
Left flanking sequence: Indices 4374 -- 4873
TAGGAGGTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTATGAGTAGAATG
GTGTTGTTTTCACGGTATTTGGCAGACTGTAGTGCAAGATTCAACACGCATGTCTCGACTCGTGG
TTAGAATCTTAATCCGTCATTTGGCTAGAATCTTTGGCATTGGTGGCGGGTTAGAATCTTTTCTA
ATTGATATTTTATTAGTCTTGACCTTGGTTAGAATCTTGATCCGACATTTGGCTAGAATCTTTTG
GCATTGGTGCAGGGTTAGATTTTTCTGTTTGGTTAGTCTTGACTCTTGATTAGAATCTTAATCCG
ACATTCGGCTAGAATCTTTTGGTATTGGCGGTTAGGATCTTTTCTAACTGACATTTGGTGAGTTT
TGACTCTTGGTTAGAATCTTAATCCGACATTCGGCTAGAATCTTTTGGCAATGGTGTCGGGTAGT
GCGTTGGTTGAGCAAGGAGTCTCCACATTTGGTTAGTCTAGACTC
Right flanking sequence: Indices 4962 -- 5461
TTGGCGTTGGCGGGTAGAGCCTGGTTGGGCAAGGAGTCACCACCCTCGGTCACCAGAGTCAAACC
ACACATACCACCACCCTATGGATTCCCCTCCCCTACTTTCGTAGTCTCTCTCCTAGCAAATTGTT
CGCTGTGGGTTTGATTCAGACGGCCGGTTGTGGTTCCCAAGTCTGTCGAACAAGAGGTGGACACA
GAAGTCTATCTCTGAACGAGCGTCTTGCTTCGACAGCACACTCACGGTTTTAAATCTTTCTCAAA
CCTATCACCATATAGTCCCAATGGCAGGTATCTCAAACCTATCACCTTACTTATATCTTATACAC
CCCAACCTCGTGACCCTTGCTAAATACACCATGGTGTTAAACCTTCCATTCTCAATTCTCAACCC
CATCACCGTATAGTCCCAATTATAGGTGTTTCAAACCATCTATTCTCACATTCAACCTATCACCT
TACCTATACCCTGTACACCCCAACCTCATAACCCTTGCTCAATAC
Found at i:6945 original size:21 final size:21
Alignment explanation
Indices: 6921--6962 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6911 CCATCGGAGA
6921 CAAGACCCGATCGAA-CCTGAT
1 CAAG-CCCGATCGAAGCCTGAT
*
6942 CAAGCCTGATCGAAGCCTGAT
1 CAAGCCCGATCGAAGCCTGAT
6963 TGAAGCCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (21 bp):
CAAGCCCGATCGAAGCCTGAT
Left flanking sequence: Indices 6421 -- 6920
AAAACACAAATCGACCCACCGTCGCCACCCTACTAAACCTTATTCGTCACTGAAACCGCCTCAAC
CCCCGTCGTAACCCAAACTACGTCCCGGATCAAACCGAGTTTGCAGCCAGCCCCCATTCCCAGCT
CCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAACAATGACCCCCCGC
TGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGCGTGGTTTTTCTTG
GACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAG
GAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGT
TAGCAGACAGAACTCACCCCACGACTCGAAACCGCGATAACACGCGGAACAACGCAACAGGAACC
CTCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGA
Right flanking sequence: Indices 6963 -- 7462
TGAAGCCTGATCTAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGAGACCTAT
CTAAGGAGACCTAGCCAGGAGACCTAATCAGGAGACCTGATCCAGGAGACACCCAGAAGAGGATC
CAAGTAGCTGGTTGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGAGCTCTCCAACTAGCT
CCGAGTTCTCCTAGTACCTCACGGTACTTCAACCTTCCCCTCCACCCCCTCCCATCTCCTCCAAC
CCCCTCCCATCTCCTCCCATCTCCTCCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAGCAC
TACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACACCGACGGCCTCGCCTACCTCCAGCTC
GCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGACCTA
CACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCA
Found at i:6959 original size:11 final size:11
Alignment explanation
Indices: 6929--6974 Score: 69
Period size: 11 Copynumber: 4.4 Consensus size: 11
6919 GACAAGACCC
6929 GATCGAA-CCT
1 GATCGAAGCCT
6939 GATC-AAGCCT
1 GATCGAAGCCT
6949 GATCGAAGCCT
1 GATCGAAGCCT
*
6960 GATTGAAGCCT
1 GATCGAAGCCT
6971 GATC
1 GATC
6975 TAAGGAGACC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 2 0.06
10 11 0.34
11 19 0.59
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (11 bp):
GATCGAAGCCT
Left flanking sequence: Indices 6429 -- 6928
AATCGACCCACCGTCGCCACCCTACTAAACCTTATTCGTCACTGAAACCGCCTCAACCCCCGTCG
TAACCCAAACTACGTCCCGGATCAAACCGAGTTTGCAGCCAGCCCCCATTCCCAGCTCCCACCAC
CAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAACAATGACCCCCCGCTGCACGAC
GTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGCGTGGTTTTTCTTGGACAGGAT
GTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGGAAAAGTG
AACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTTAGCAGAC
AGAACTCACCCCACGACTCGAAACCGCGATAACACGCGGAACAACGCAACAGGAACCCTCCTAGT
CACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGACCC
Right flanking sequence: Indices 6975 -- 7474
TAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGAGACCTATCTAAGGAGACCT
AGCCAGGAGACCTAATCAGGAGACCTGATCCAGGAGACACCCAGAAGAGGATCCAAGTAGCTGGT
TGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGAGCTCTCCAACTAGCTCCGAGTTCTCCT
AGTACCTCACGGTACTTCAACCTTCCCCTCCACCCCCTCCCATCTCCTCCAACCCCCTCCCATCT
CCTCCCATCTCCTCCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAGCACTACCCATCCACG
CCGTCTGGCAGACGCTCTACCTGTACACCGACGGCCTCGCCTACCTCCAGCTCGCAAACAACGAC
TTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGACCTACACCCAGGGACA
GCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACTCCACGCCGTT
Found at i:7034 original size:26 final size:28
Alignment explanation
Indices: 6972--7077 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 28
6962 TTGAAGCCTG
* *
6972 ATCTAAGGAGACCGATCCAAGGAGACCA
1 ATCTAAGGAGACCTATCCAAGGAGACCT
**
7000 ATCCCA-G-GACCTATCCAAGGAGACCT
1 ATCTAAGGAGACCTATCCAAGGAGACCT
*
7026 ATCTAAGGAGACCTAGCC-AGGAGACCT
1 ATCTAAGGAGACCTATCCAAGGAGACCT
7053 AATC--AGGAGACCTGATCC-AGGAGAC
1 -ATCTAAGGAGACCT-ATCCAAGGAGAC
7078 ACCCAGAAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
26 30 0.45
27 21 0.32
28 15 0.23
ACGTcount: A:0.35, C:0.27, G:0.25, T:0.13
Consensus pattern (28 bp):
ATCTAAGGAGACCTATCCAAGGAGACCT
Left flanking sequence: Indices 6472 -- 6971
GAAACCGCCTCAACCCCCGTCGTAACCCAAACTACGTCCCGGATCAAACCGAGTTTGCAGCCAGC
CCCCATTCCCAGCTCCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAA
CAATGACCCCCCGCTGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTG
CGTGGTTTTTCTTGGACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAA
AGAGATGTCACCAGGAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAG
CTAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGACTCGAAACCGCGATAACACGCGGAACA
ACGCAACAGGAACCCTCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGAC
CCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATTGAAGCCTG
Right flanking sequence: Indices 7078 -- 7577
ACCCAGAAGAGGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGA
GCTCTCCAACTAGCTCCGAGTTCTCCTAGTACCTCACGGTACTTCAACCTTCCCCTCCACCCCCT
CCCATCTCCTCCAACCCCCTCCCATCTCCTCCCATCTCCTCCCACCATGAACAGGCTCGTCCTAG
CACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACACCGACGGCCTC
GCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCAC
CGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACTCCA
CGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCGGTG
TCCCAATACGACCTGGAGGAGGACAAATGGAACCAGAGCCACGAG
Found at i:7049 original size:13 final size:13
Alignment explanation
Indices: 6977--7077 Score: 91
Period size: 14 Copynumber: 7.5 Consensus size: 13
6967 GCCTGATCTA
*
6977 AGGAGACCGATCC
1 AGGAGACCTATCC
*
6990 AAGGAGACCAATCCC
1 -AGGAGACCTAT-CC
7005 A-G-GACCTATCC
1 AGGAGACCTATCC
*
7016 AAGGAGACCTATCTA
1 -AGGAGACCTATC-C
*
7031 AGGAGACCTAGCC
1 AGGAGACCTATCC
7044 AGGAGACCTAAT-C
1 AGGAGACCT-ATCC
7057 AGGAGACCTGATCC
1 AGGAGACCT-ATCC
7071 AGGAGAC
1 AGGAGAC
7078 ACCCAGAAGA
Statistics
Matches: 73, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
11 2 0.03
12 7 0.10
13 23 0.32
14 39 0.53
15 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.26, T:0.12
Consensus pattern (13 bp):
AGGAGACCTATCC
Left flanking sequence: Indices 6477 -- 6976
CGCCTCAACCCCCGTCGTAACCCAAACTACGTCCCGGATCAAACCGAGTTTGCAGCCAGCCCCCA
TTCCCAGCTCCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAACAATG
ACCCCCCGCTGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGCGTGG
TTTTTCTTGGACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGA
TGTCACCAGGAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAG
TGATTGCGTTAGCAGACAGAACTCACCCCACGACTCGAAACCGCGATAACACGCGGAACAACGCA
ACAGGAACCCTCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGACCCGAT
CGAACCTGATCAAGCCTGATCGAAGCCTGATTGAAGCCTGATCTA
Right flanking sequence: Indices 7078 -- 7577
ACCCAGAAGAGGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGA
GCTCTCCAACTAGCTCCGAGTTCTCCTAGTACCTCACGGTACTTCAACCTTCCCCTCCACCCCCT
CCCATCTCCTCCAACCCCCTCCCATCTCCTCCCATCTCCTCCCACCATGAACAGGCTCGTCCTAG
CACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACACCGACGGCCTC
GCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCAC
CGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACTCCA
CGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCGGTG
TCCCAATACGACCTGGAGGAGGACAAATGGAACCAGAGCCACGAG
Found at i:7065 original size:54 final size:53
Alignment explanation
Indices: 6972--7077 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
6962 TTGAAGCCTG
*
6972 ATCTAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCT-ATCCAAGGAGACCT
1 ATCTAAGGAGACCGAGCCAAGGAGACCAAT-CCAGGACCTGATCC-AGGAGACCT
*
7026 ATCTAAGGAGACCTAGCC-AGGAGACCTAAT-CAGGAGACCTGATCCAGGAGAC
1 ATCTAAGGAGACCGAGCCAAGGAGACC-AATCCA-G-GACCTGATCCAGGAGAC
7078 ACCCAGAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
52 2 0.04
53 9 0.20
54 31 0.67
55 4 0.09
ACGTcount: A:0.35, C:0.27, G:0.25, T:0.13
Consensus pattern (53 bp):
ATCTAAGGAGACCGAGCCAAGGAGACCAATCCAGGACCTGATCCAGGAGACCT
Left flanking sequence: Indices 6472 -- 6971
GAAACCGCCTCAACCCCCGTCGTAACCCAAACTACGTCCCGGATCAAACCGAGTTTGCAGCCAGC
CCCCATTCCCAGCTCCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAA
CAATGACCCCCCGCTGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTG
CGTGGTTTTTCTTGGACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAA
AGAGATGTCACCAGGAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAG
CTAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGACTCGAAACCGCGATAACACGCGGAACA
ACGCAACAGGAACCCTCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGAC
CCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATTGAAGCCTG
Right flanking sequence: Indices 7078 -- 7577
ACCCAGAAGAGGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGA
GCTCTCCAACTAGCTCCGAGTTCTCCTAGTACCTCACGGTACTTCAACCTTCCCCTCCACCCCCT
CCCATCTCCTCCAACCCCCTCCCATCTCCTCCCATCTCCTCCCACCATGAACAGGCTCGTCCTAG
CACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACACCGACGGCCTC
GCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCAC
CGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACTCCA
CGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCGGTG
TCCCAATACGACCTGGAGGAGGACAAATGGAACCAGAGCCACGAG
Found at i:7238 original size:10 final size:10
Alignment explanation
Indices: 7205--7251 Score: 67
Period size: 10 Copynumber: 4.7 Consensus size: 10
7195 CCCTCCACCC
7205 CCTCCCATCT
1 CCTCCCATCT
* * *
7215 CCTCCAACCC
1 CCTCCCATCT
7225 CCTCCCATCT
1 CCTCCCATCT
7235 CCTCCCATCT
1 CCTCCCATCT
7245 CCTCCCA
1 CCTCCCA
7252 CCATGAACAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.13, C:0.64, G:0.00, T:0.23
Consensus pattern (10 bp):
CCTCCCATCT
Left flanking sequence: Indices 6705 -- 7204
GTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGGAAAAGTGAACTAATCCCATCTAT
TTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGA
CTCGAAACCGCGATAACACGCGGAACAACGCAACAGGAACCCTCCTAGTCACCCACTACACAGGA
CGTGGACCAGACCATCGGAGACAAGACCCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATTG
AAGCCTGATCTAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGAGACCTATCT
AAGGAGACCTAGCCAGGAGACCTAATCAGGAGACCTGATCCAGGAGACACCCAGAAGAGGATCCA
AGTAGCTGGTTGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGAGCTCTCCAACTAGCTCC
GAGTTCTCCTAGTACCTCACGGTACTTCAACCTTCCCCTCCACCC
Right flanking sequence: Indices 7252 -- 7751
CCATGAACAGGCTCGTCCTAGCACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTC
TACCTGTACACCGACGGCCTCGCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTT
CTCCATCGACGGCTCCTTCACCGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTG
CGAGCCCACCCGAGCACTCCACGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGAC
GCCCGCGGCCGTCTCGCGGTGTCCCAATACGACCTGGAGGAGGACAAATGGAACCAGAGCCACGA
GCCCGACTTCACCACCATCGGCGACTCAAAATACTACAGCGGGTGCTCGGTGATGGCGGTCCCCG
GCGACAACAACACCGTGTACGTCTACGGAGGCGATCTTCCCGACTCCGACCTGGTGTCGGGCCGC
CTCCTCTCGCTCGACCTCGACGTCCTCCGGTTCAACAACATCACC
Found at i:7251 original size:20 final size:20
Alignment explanation
Indices: 7196--7239 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
7186 TCAACCTTCC
7196 CCTCC-ACCCCCTCCCATCT
1 CCTCCAACCCCCTCCCATCT
7215 CCTCCAACCCCCTCCCATCT
1 CCTCCAACCCCCTCCCATCT
7235 CCTCC
1 CCTCC
7240 CATCTCCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.11, C:0.68, G:0.00, T:0.20
Consensus pattern (20 bp):
CCTCCAACCCCCTCCCATCT
Left flanking sequence: Indices 6696 -- 7195
GAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGGAAAAGTGAACTAAT
CCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTTAGCAGACAGAACTC
ACCCCACGACTCGAAACCGCGATAACACGCGGAACAACGCAACAGGAACCCTCCTAGTCACCCAC
TACACAGGACGTGGACCAGACCATCGGAGACAAGACCCGATCGAACCTGATCAAGCCTGATCGAA
GCCTGATTGAAGCCTGATCTAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGA
GACCTATCTAAGGAGACCTAGCCAGGAGACCTAATCAGGAGACCTGATCCAGGAGACACCCAGAA
GAGGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCACACCCGCTACCTCCGAGCTCTCCA
ACTAGCTCCGAGTTCTCCTAGTACCTCACGGTACTTCAACCTTCC
Right flanking sequence: Indices 7240 -- 7739
CATCTCCTCCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAGCACTACCCATCCACGCCGTC
TGGCAGACGCTCTACCTGTACACCGACGGCCTCGCCTACCTCCAGCTCGCAAACAACGACTTGCT
CAAGCTCAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGACCTACACCCAGGGACAGCAGG
TAGAGGCGCTTGCGAGCCCACCCGAGCACTCCACGCCGTTCCTCGTGGGCTCCACCCTCTACGTG
CTCCATTCTGACGCCCGCGGCCGTCTCGCGGTGTCCCAATACGACCTGGAGGAGGACAAATGGAA
CCAGAGCCACGAGCCCGACTTCACCACCATCGGCGACTCAAAATACTACAGCGGGTGCTCGGTGA
TGGCGGTCCCCGGCGACAACAACACCGTGTACGTCTACGGAGGCGATCTTCCCGACTCCGACCTG
GTGTCGGGCCGCCTCCTCTCGCTCGACCTCGACGTCCTCCGGTTC
Found at i:8210 original size:12 final size:12
Alignment explanation
Indices: 8193--8222 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8183 TGTCGATGAC
8193 GACGACAAAAAG
1 GACGACAAAAAG
*
8205 GACGACAACAAG
1 GACGACAAAAAG
8217 GACGAC
1 GACGAC
8223 GACAGCAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.23, G:0.27, T:0.00
Consensus pattern (12 bp):
GACGACAAAAAG
Left flanking sequence: Indices 7693 -- 8192
TGGTGTCGGGCCGCCTCCTCTCGCTCGACCTCGACGTCCTCCGGTTCAACAACATCACCACGGCA
ACAAAACCACAGCCGTTTGCCGGTGCAGCCGTGGTCATGGCCCCCAACCCGCAGACCAACCTCGT
GATAGGCGGCCAGCTGCGTCTGGGGTGGCTCAACATGTACCAGGTGGCCACCTGGGACTTTGCCG
TGGGCTGGTCATTCAAACAGGTGGAAAAGGACGCTCTGGCCAAGGTGGCGCTGCGTCGGGACGCG
CTCGCGCTTCCTGTGTTCAACAAGACCACCCCCAGCAAGTGGGACTCCGAGTTCGCCGTGCTGGA
GGTGGTGCTCCTCGGAGGCGAGCTCATGGGCAAACCGCTGGTGCCACTGGTGGCCAAGCTCGCGA
TGGCGCTGAACGTGTGGACCTGGAGCAACACCAGTCTGTCCCAGCCGTTTGCCAAGCCGTTTGTG
GGCGCTGCCACCATCTTCAACACCTTGGTGACCATTGTCGATGAC
Right flanking sequence: Indices 8223 -- 8722
GACAGCAAAGACAACGAAAAGAGGGGCTCTACCGGTCAGTCACGACTCGCGAGAGCCCTCACCTC
GCCGTGGTGGCGCCTCGGCCGCCGGTGGCTGCTCGAATCCGAGCCACTTGCCAAAAGAGGAAAGA
ACTACAAGCTCGCTCTCTACGACACCTCGCTGTTTGAGCCGGTGGACTCGGTGGCACTGAACTAC
GCCAAGACCGCGGGGCCCACCGCCGAGGCGCAAAAGCTGGCCAAGCAGACCAAAGTGCTCCTAGG
CACCATCGTCCCCATCCTGGCGTTGGGAGCGTTGGCGCTCGTCACCCTAGCGGTGTGGAGACACC
GCAAGCAGCGCCAGCACGACCAGTTGGCGGACGTCGACAGCTACCAGTTTGACTACTACGCCGAG
CTGAAGCTGGACCCGTTCGAGTTGCGCCCGCTGCAGCTGATGCTGACCCTTGACGACGACGACGG
GGCCCTGTTCAACCTGTGGATGCGCAAGCGCCAGCAGTACGAAAT
Found at i:12521 original size:15 final size:15
Alignment explanation
Indices: 12501--12531 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12491 TTCCTGGCAC
*
12501 GATCACTACGGGTAA
1 GATCACCACGGGTAA
12516 GATCACCACGGGTAA
1 GATCACCACGGGTAA
12531 G
1 G
12532 TGTCCAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.29, T:0.16
Consensus pattern (15 bp):
GATCACCACGGGTAA
Left flanking sequence: Indices 12001 -- 12500
CGGCATTAAGCTGATGGCTGCAAACGCTGCGCACAGCGCAAGAGAAATTCTCTCGCAGTTACACA
ATACATCACTTTTAGTCAATCAAGAAATCTATATAACTTACCCTTTGCAACTTTAGTATCCCACC
CATAGTATATATACCGATGTTGCCATATAAGAACTAAAGACTATTGGAACTCAACCAATTAGAAA
AGAACCGCTTAAAATGATAACTATGTCTCAGCCCTCTTCTCCCCAGGAGAACTCTCTCGCCAAAG
ACAGCTCTATCTTGCTGAACCGCTCGACTGCCACCGGTTGAGCCCGCAACCAGCCGTCTTTCCAA
CAAAAGCCTGCTTTCAATTCTGGTTCCGACCAATCCAATAGTCGGTGAGGTTTTCATTGGTCAAT
TCTCGTGTCGATAGGCCCTCCACAAGTTCCACTTCTACGAGCAGTAGACTAACTGACAGAGAGCT
CGTGGGTAAACTCCCCGGACGTAGGGATTCGTGTGTTCCTGGCAC
Right flanking sequence: Indices 12532 -- 13031
TGTCCAACCACTATCCGGTCTAAATCCAGGAATCAACCCATTTGACAGCACTCAACCCGGCTAAA
GCCCGAGCTCGTAAACACGTCTTAGCCAGTTTCTCTATGTTACCCGAAAGGCGTTAGATCACCGC
GTGGTCATCGTCCCATCGTCGTCTCATCAAGTGCGTTATACCGAGGCTTTCGCTGAGCGAGGCTT
GGCAAAACCCTCGAGAGACCAACCACGCAACAACCAGCCGACGGCCACCGCAGCCTGTCAACCCC
TACTCGTAGATCGCCTGTCACATGATCGCTAACCGTAACTGGCTGAGACCCACACGACCATTAAG
CGAGACACAAAACGTAGCAGACCTGGTGGACAAAACATCACGACCAAAACCAAGCATTTAAAAGG
TAAAACCTATACAACACCGCATTCAGAAAGCAAACCTTACAAGTAAACCTACAACCCACTTTGCT
ACTACCGGACCCCTGGGCCTCGGCGAGTCAATTGCCGAGTCCCCG
Found at i:15546 original size:13 final size:13
Alignment explanation
Indices: 15528--15553 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15518 GCAGAGAATA
15528 CTCTTTGACCATG
1 CTCTTTGACCATG
15541 CTCTTTGACCATG
1 CTCTTTGACCATG
15554 AACTTATTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
CTCTTTGACCATG
Left flanking sequence: Indices 15028 -- 15527
TCTACGGCAACGACGTGTTCCTCAAAACGGGCCGCCAGGCCAAGTTCTTGAACCCGTTTGACGAG
TACTACAACGCCGAGCTGTTCATTTTGCAGCGGGTGATTGACGAGGTGCTTGAGAAAACCAACGT
GCTTGTGACGCGGCTGAAGCTCATTGTCGAGCACGAGAACTTGCCGGTGCCCCCGCCGCACTTGC
TCATTAATACCAACGCAGGGGTGACGGCACCCGAGTACGAGAAGCTTTTGCGGGCGATCCCCGAG
GCGTTTGAGCGGGCGTGCGGCGGGTTGCAGCTGGAGAGAGACCTTTTGGTGTTGAACGACGAAAT
TGCCCGCTACGGGGCGTAACTAATAACTAATGACAGCCTCGGCTAATAAACAGACATGAAGAGGA
GAGTAGTTGAAAGAAAAATACGGAGCTACACGGTTTATGGCAATTTAAGAGCCACAATTGAAGGA
AGAACCAGAGCCACAAATTAGGAAGCCATAAATAAGCAGAGAATA
Right flanking sequence: Indices 15554 -- 16053
AACTTATTACTCAATCACCTCGCTCTCACAATACAATGTGATCCCTATAATAGACCATATAGTAT
GTTCAAATGTAAGCAACACAGCAATATATCACTAAAATACTAAACTCTCAAATCTCAATCAAGAA
GCACAGATCTAGATTTCAATTTCAATTTCAATATCAATTTTTATCACAAAAATATCTGTTTTTGA
ACTTGAAATCGAATCTACCCCAAAATTATCCATATAACCAATTCAACCAGCCAGCTGGTGGAGAG
GAAGATTTTGCTATGGTGCACTAACCCAGTTCATCACCCTCATAGCCTGGTATCATTCCTTCGTT
ACATTACGTTCATTACTCTATAATCGTCCCAATAACGCTGGGAGCTCGCCACTCATATTCTCGAG
GGCTCAGCAAACGCCTGGCGGAACCACTCCAAGATCCGTCGGTAGATCACTATGTTGGCGTTGTC
AAACGAAATGCTGTGGTCGGAGTCGGGGTACACCAAGAGATCGTA
Found at i:18458 original size:14 final size:13
Alignment explanation
Indices: 18420--18461 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
18410 AGGCTGGTAG
*
18420 AACGAGGAGGGAA
1 AACGAGGATGGAA
18433 AACGAGGATGGAA
1 AACGAGGATGGAA
18446 AACGAGAGATGGAA
1 AACGAG-GATGGAA
18460 AA
1 AA
18462 GGAGAAGGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 18 0.67
14 9 0.33
ACGTcount: A:0.50, C:0.07, G:0.38, T:0.05
Consensus pattern (13 bp):
AACGAGGATGGAA
Left flanking sequence: Indices 17920 -- 18419
TTCGTGGGTTTTTCCGCCGTGGTCGAAAGCGTTCCCGGGGAAAAGCACCCGCAGCAGGTTGTCAG
CCACCTGGTGGACGTAGAATCCGTCTTCTCGGACCACATACTGGCCCTGGTCGTGGAGCAATGCG
TCGTCGGAACGGAGCCACTGCACCAGCTGGAACTCGGGTCTGAACACCCCAGCGTGCCAGCCGGT
GACGTTCAAGCGGCGGGGGTCGTCTTTGTGGCTGTGGGCGGGGCTGGGAACGGGCACACCCACTC
TGGCTGTGGCCAAGAGTGTGTTGATGTGGCCCACAAGCAAGTAGGAGCCCCACACAAGAAGCAAG
AGCACTGACCCCGTCCAGAGCGGCCTGCTCAGCCGTCTGGGTTCGTCGTATTTCATGGTTGCGGG
GTTGTAGCGAGGGTAGGAGATGTCTTGACAGGGTCCTTCGTTAATGCAAGTGATTAAGCCGTGAT
GTCATGCGGCTTTGGTCGGGACACGACGAAACAAAAGGCTGGTAG
Right flanking sequence: Indices 18462 -- 18961
GGAGAAGGGGGTGGGAACAATGGTTTGGTTAGTTGGTTGGTGTAAGAAGTGCTTGTTTAGTGGAT
TTATGAGGTCAGAAGGTATCTCACCTTTGACACCTCAGCAAGTGTAAGAACAGAGAATGAGGCTA
TGGCAAGGCAGCCTCCCGCAGCGATCATGTCAGCATTAGAGCCGTTGGCCACACCTAATCGTATT
TCTGTAAGATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGGCTCGTTTGTTCTTCA
CATTGGCTATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCACGGGCTCGGGCTTG
GGCTCGGGCTTGGGTTCCTTCTTTGGCTTGGGCTTGGGCTTCGGTTGTGGGGCCCCCATGCGGCC
CAGGAGCGTCAGCATCATCATCAGGAGGAGAACCAGGTCGTCTTCATAGTCGTCAAAGTCTGCGG
GGGTGATTTCGCCCCGGATCTTGACGAGCTCGCCCTCTTCTTCGA
Found at i:18466 original size:14 final size:14
Alignment explanation
Indices: 18420--18466 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 14
18410 AGGCTGGTAG
*
18420 AACGAG-GAGGGAA
1 AACGAGAGATGGAA
18433 AACGAG-GATGGAA
1 AACGAGAGATGGAA
18446 AACGAGAGATGGAA
1 AACGAGAGATGGAA
*
18460 AAGGAGA
1 AACGAGA
18467 AGGGGGTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 18 0.58
14 13 0.42
ACGTcount: A:0.49, C:0.06, G:0.40, T:0.04
Consensus pattern (14 bp):
AACGAGAGATGGAA
Left flanking sequence: Indices 17920 -- 18419
TTCGTGGGTTTTTCCGCCGTGGTCGAAAGCGTTCCCGGGGAAAAGCACCCGCAGCAGGTTGTCAG
CCACCTGGTGGACGTAGAATCCGTCTTCTCGGACCACATACTGGCCCTGGTCGTGGAGCAATGCG
TCGTCGGAACGGAGCCACTGCACCAGCTGGAACTCGGGTCTGAACACCCCAGCGTGCCAGCCGGT
GACGTTCAAGCGGCGGGGGTCGTCTTTGTGGCTGTGGGCGGGGCTGGGAACGGGCACACCCACTC
TGGCTGTGGCCAAGAGTGTGTTGATGTGGCCCACAAGCAAGTAGGAGCCCCACACAAGAAGCAAG
AGCACTGACCCCGTCCAGAGCGGCCTGCTCAGCCGTCTGGGTTCGTCGTATTTCATGGTTGCGGG
GTTGTAGCGAGGGTAGGAGATGTCTTGACAGGGTCCTTCGTTAATGCAAGTGATTAAGCCGTGAT
GTCATGCGGCTTTGGTCGGGACACGACGAAACAAAAGGCTGGTAG
Right flanking sequence: Indices 18467 -- 18966
AGGGGGTGGGAACAATGGTTTGGTTAGTTGGTTGGTGTAAGAAGTGCTTGTTTAGTGGATTTATG
AGGTCAGAAGGTATCTCACCTTTGACACCTCAGCAAGTGTAAGAACAGAGAATGAGGCTATGGCA
AGGCAGCCTCCCGCAGCGATCATGTCAGCATTAGAGCCGTTGGCCACACCTAATCGTATTTCTGT
AAGATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGGCTCGTTTGTTCTTCACATTG
GCTATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCACGGGCTCGGGCTTGGGCTC
GGGCTTGGGTTCCTTCTTTGGCTTGGGCTTGGGCTTCGGTTGTGGGGCCCCCATGCGGCCCAGGA
GCGTCAGCATCATCATCAGGAGGAGAACCAGGTCGTCTTCATAGTCGTCAAAGTCTGCGGGGGTG
ATTTCGCCCCGGATCTTGACGAGCTCGCCCTCTTCTTCGAGGGTG
Found at i:18791 original size:12 final size:12
Alignment explanation
Indices: 18774--18800 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
18764 GTTTCTCCAC
18774 GGGCTCGGGCTT
1 GGGCTCGGGCTT
18786 GGGCTCGGGCTT
1 GGGCTCGGGCTT
18798 GGG
1 GGG
18801 TTCCTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.22, G:0.56, T:0.22
Consensus pattern (12 bp):
GGGCTCGGGCTT
Left flanking sequence: Indices 18274 -- 18773
CAGCCGTCTGGGTTCGTCGTATTTCATGGTTGCGGGGTTGTAGCGAGGGTAGGAGATGTCTTGAC
AGGGTCCTTCGTTAATGCAAGTGATTAAGCCGTGATGTCATGCGGCTTTGGTCGGGACACGACGA
AACAAAAGGCTGGTAGAACGAGGAGGGAAAACGAGGATGGAAAACGAGAGATGGAAAAGGAGAAG
GGGGTGGGAACAATGGTTTGGTTAGTTGGTTGGTGTAAGAAGTGCTTGTTTAGTGGATTTATGAG
GTCAGAAGGTATCTCACCTTTGACACCTCAGCAAGTGTAAGAACAGAGAATGAGGCTATGGCAAG
GCAGCCTCCCGCAGCGATCATGTCAGCATTAGAGCCGTTGGCCACACCTAATCGTATTTCTGTAA
GATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGGCTCGTTTGTTCTTCACATTGGC
TATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCAC
Right flanking sequence: Indices 18801 -- 19300
TTCCTTCTTTGGCTTGGGCTTGGGCTTCGGTTGTGGGGCCCCCATGCGGCCCAGGAGCGTCAGCA
TCATCATCAGGAGGAGAACCAGGTCGTCTTCATAGTCGTCAAAGTCTGCGGGGGTGATTTCGCCC
CGGATCTTGACGAGCTCGCCCTCTTCTTCGAGGGTGACGGGTGCTGGCTTGGGCGTGGGGTTGGC
CTTGGGCTCGGGCTTAGACTCTGGTTTCGTAGGTTCGGGCTCCTTTGCCGGGACTGGCTCTGGCT
TGGACTCCGGCTTCTCGGCTGGCTTCTCGGCTGGCGTCTCAGCTGGCTCCACCGGCTTCTCCGCC
GGCTTCTCAGTCTTACCAGCGAGCTTCTCGGGCTTCTCGGGCTTCTCGGGCTTCTCAATGGGCTT
CGCAGCCTCCTGGGGCACAGGCTTAGCCTCCACTGCGGGCTTGGCAGCTTCCTTGGGCACCCGCA
CTGACTCCACCACGGGCACCTTCGCTTCCTTAGGCACCGGAGGCA
Found at i:19084 original size:12 final size:12
Alignment explanation
Indices: 19069--19108 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
19059 CTTGGACTCC
19069 GGCTTCTCGGCT
1 GGCTTCTCGGCT
19081 GGCTTCTCGGCT
1 GGCTTCTCGGCT
* *
19093 GGCGTCTCAGCT
1 GGCTTCTCGGCT
19105 GGCT
1 GGCT
19109 CCACCGGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.33, G:0.35, T:0.30
Consensus pattern (12 bp):
GGCTTCTCGGCT
Left flanking sequence: Indices 18569 -- 19068
TGTAAGAACAGAGAATGAGGCTATGGCAAGGCAGCCTCCCGCAGCGATCATGTCAGCATTAGAGC
CGTTGGCCACACCTAATCGTATTTCTGTAAGATGAGGACAGAATTTGGAAAATCAGCTGACCCAA
AGTCAAGGCTCGTTTGTTCTTCACATTGGCTATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTG
GTTTCTCCACGGGCTCGGGCTTGGGCTCGGGCTTGGGTTCCTTCTTTGGCTTGGGCTTGGGCTTC
GGTTGTGGGGCCCCCATGCGGCCCAGGAGCGTCAGCATCATCATCAGGAGGAGAACCAGGTCGTC
TTCATAGTCGTCAAAGTCTGCGGGGGTGATTTCGCCCCGGATCTTGACGAGCTCGCCCTCTTCTT
CGAGGGTGACGGGTGCTGGCTTGGGCGTGGGGTTGGCCTTGGGCTCGGGCTTAGACTCTGGTTTC
GTAGGTTCGGGCTCCTTTGCCGGGACTGGCTCTGGCTTGGACTCC
Right flanking sequence: Indices 19109 -- 19608
CCACCGGCTTCTCCGCCGGCTTCTCAGTCTTACCAGCGAGCTTCTCGGGCTTCTCGGGCTTCTCG
GGCTTCTCAATGGGCTTCGCAGCCTCCTGGGGCACAGGCTTAGCCTCCACTGCGGGCTTGGCAGC
TTCCTTGGGCACCCGCACTGACTCCACCACGGGCACCTTCGCTTCCTTAGGCACCGGAGGCACCT
GGGAAACAGGGGCCTGTGCCGGTTTGGCCGCGGGCGACCGCACGGGGGACGCCACCGGGGCTGCG
CCGTTGGCCCTGGCAGGGCTGAACTCCGGCTTCTTCTTCGGAGACCCGATCTTCACCGGCACCCG
CGGCGGAGACGCCTTCGGGGGCCTCACCGGGGTGGCGGGCTCGTGGTGGCGGGCCAGGCGGGCCT
CAAACGGGTTTATCTGGGGCTCGGAGTCCTGCTCGTGCACCTCGTAGCTCGGGATGCGGAAGGGA
TTGGGTCTGGCGGGCTTGGGAGCACCCTGGCGGTGGCTGGGTCTC
Found at i:19162 original size:9 final size:9
Alignment explanation
Indices: 19148--19181 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
19138 TTACCAGCGA
19148 GCTTCTCGG
1 GCTTCTCGG
19157 GCTTCTCGG
1 GCTTCTCGG
19166 GCTTCTCGG
1 GCTTCTCGG
19175 GCTTCTC
1 GCTTCTC
19182 AATGGGCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.00, C:0.35, G:0.29, T:0.35
Consensus pattern (9 bp):
GCTTCTCGG
Left flanking sequence: Indices 18648 -- 19147
AATCGTATTTCTGTAAGATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGGCTCGTT
TGTTCTTCACATTGGCTATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCACGGGC
TCGGGCTTGGGCTCGGGCTTGGGTTCCTTCTTTGGCTTGGGCTTGGGCTTCGGTTGTGGGGCCCC
CATGCGGCCCAGGAGCGTCAGCATCATCATCAGGAGGAGAACCAGGTCGTCTTCATAGTCGTCAA
AGTCTGCGGGGGTGATTTCGCCCCGGATCTTGACGAGCTCGCCCTCTTCTTCGAGGGTGACGGGT
GCTGGCTTGGGCGTGGGGTTGGCCTTGGGCTCGGGCTTAGACTCTGGTTTCGTAGGTTCGGGCTC
CTTTGCCGGGACTGGCTCTGGCTTGGACTCCGGCTTCTCGGCTGGCTTCTCGGCTGGCGTCTCAG
CTGGCTCCACCGGCTTCTCCGCCGGCTTCTCAGTCTTACCAGCGA
Right flanking sequence: Indices 19182 -- 19681
AATGGGCTTCGCAGCCTCCTGGGGCACAGGCTTAGCCTCCACTGCGGGCTTGGCAGCTTCCTTGG
GCACCCGCACTGACTCCACCACGGGCACCTTCGCTTCCTTAGGCACCGGAGGCACCTGGGAAACA
GGGGCCTGTGCCGGTTTGGCCGCGGGCGACCGCACGGGGGACGCCACCGGGGCTGCGCCGTTGGC
CCTGGCAGGGCTGAACTCCGGCTTCTTCTTCGGAGACCCGATCTTCACCGGCACCCGCGGCGGAG
ACGCCTTCGGGGGCCTCACCGGGGTGGCGGGCTCGTGGTGGCGGGCCAGGCGGGCCTCAAACGGG
TTTATCTGGGGCTCGGAGTCCTGCTCGTGCACCTCGTAGCTCGGGATGCGGAAGGGATTGGGTCT
GGCGGGCTTGGGAGCACCCTGGCGGTGGCTGGGTCTCGCCTTGGGCAACCAGGTCTCGTGTTCGA
CTTTGGCTTCCATGTTACGGGTAACTACGGGATGGCTCGGCCACG
Found at i:20374 original size:11 final size:12
Alignment explanation
Indices: 20337--20381 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 12
20327 ATTAGGGCAC
*
20337 AGGTGATTGGCT
1 AGGTGGTTGGCT
20349 -GG-GGTTGGCT
1 AGGTGGTTGGCT
*
20359 GGGTGG-TGGCT
1 AGGTGGTTGGCT
20370 AGGTGGTTGGCT
1 AGGTGGTTGGCT
20382 GGGCACTTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 7 0.25
11 14 0.50
12 7 0.25
ACGTcount: A:0.07, C:0.09, G:0.53, T:0.31
Consensus pattern (12 bp):
AGGTGGTTGGCT
Left flanking sequence: Indices 19837 -- 20336
AGCCAAGCACCGGGGAGGGTGCTGGACGGTGGCTGGCTGGCCAAGCGCGGACGTGGCCCTCCACG
GGTGGGTAAGCTGATCGGGGTGAAATTGGCCGAGCACCTGGTGCCTCCTGATCTGACCACTGACG
TGGCAGGAAACGTAGGGCTGGTGGGCCAGCTGACGGGCGAGCGAACGGGCCGCTGACGTGACAGC
TCGCGGGTTGATTAGCGTAGGCACGGGAGTCACGGTGAATAAGCCGTGATTAGGCGAGCGAGGCT
TAGGGTGGGGGTGAGAGGGGTATCTAGGCCGTTGGCGGTTGGACGGGGTGGCTAATCGTCTCGTA
GACGGGCTGAGGGGGCCGCAAGCGGCGCCCCCTCAGACTCCCCCAACGCTTATTGTGGGGTGAGT
TGTGAAGGGGTTGTGGTGGTGTATGGGTTAAGGGGGAAGGGTAGCCTAGAGGTGGAAGAGAAGGT
GGAGACGGTGGGACGGTAGGGGTGGAGTGGAGTGGATTAGGGCAC
Right flanking sequence: Indices 20382 -- 20881
GGGCACTTGGTTGGGTGGTTGGGTGGTTGGCCGGGTGGTGGTGTAGGTTCTACAGATGGCTTCTG
GGTGGTGGTTTCAGTATATCAGAATTACAGTATATTCGGTTGATTCCTCAGTCAATAGCTACACT
CGCACGACTAGTGCAATCTTCTGAAACGAACGGAAGACATCCCAATTCGCAGTTCTGCTCTCACC
CTTCCCACCCGGCTTCCTACCTTCACCCGGTGGTCCCGAGGCATCACCCTTTACGAGAACAAAGA
AAGCATCGTAACCCATAGAAGAAACTCCGGCCTCGTAACACACACACACACAATTCAAACACACA
CAATTCAAACAACCTCTTCACATTACCCCATTCACTCAGATCACCCACCCATTACTTCCATACTC
GTCTCCCATTAGCCTACGTATTACCCCAAACAGGCGCCAAAACCAAACAATAAACCATACAAACA
AACCCTGGACACCCCTTGACACCCCTAGCCACCACCAACACTCTA
Found at i:20403 original size:12 final size:12
Alignment explanation
Indices: 20338--20403 Score: 57
Period size: 12 Copynumber: 5.8 Consensus size: 12
20328 TTAGGGCACA
*
20338 GGTGATTGGCT-
1 GGTGGTTGGCTG
20349 GG-GGTTGGCTG
1 GGTGGTTGGCTG
*
20360 GGTGG-TGGCTA
1 GGTGGTTGGCTG
20371 GGTGGTTGGCTG
1 GGTGGTTGGCTG
*** *
20383 GGCACTTGGTTG
1 GGTGGTTGGCTG
20395 GGTGGTTGG
1 GGTGGTTGG
20404 GTGGTTGGCC
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
10 7 0.17
11 14 0.33
12 21 0.50
ACGTcount: A:0.05, C:0.09, G:0.55, T:0.32
Consensus pattern (12 bp):
GGTGGTTGGCTG
Left flanking sequence: Indices 19838 -- 20337
GCCAAGCACCGGGGAGGGTGCTGGACGGTGGCTGGCTGGCCAAGCGCGGACGTGGCCCTCCACGG
GTGGGTAAGCTGATCGGGGTGAAATTGGCCGAGCACCTGGTGCCTCCTGATCTGACCACTGACGT
GGCAGGAAACGTAGGGCTGGTGGGCCAGCTGACGGGCGAGCGAACGGGCCGCTGACGTGACAGCT
CGCGGGTTGATTAGCGTAGGCACGGGAGTCACGGTGAATAAGCCGTGATTAGGCGAGCGAGGCTT
AGGGTGGGGGTGAGAGGGGTATCTAGGCCGTTGGCGGTTGGACGGGGTGGCTAATCGTCTCGTAG
ACGGGCTGAGGGGGCCGCAAGCGGCGCCCCCTCAGACTCCCCCAACGCTTATTGTGGGGTGAGTT
GTGAAGGGGTTGTGGTGGTGTATGGGTTAAGGGGGAAGGGTAGCCTAGAGGTGGAAGAGAAGGTG
GAGACGGTGGGACGGTAGGGGTGGAGTGGAGTGGATTAGGGCACA
Right flanking sequence: Indices 20404 -- 20903
GTGGTTGGCCGGGTGGTGGTGTAGGTTCTACAGATGGCTTCTGGGTGGTGGTTTCAGTATATCAG
AATTACAGTATATTCGGTTGATTCCTCAGTCAATAGCTACACTCGCACGACTAGTGCAATCTTCT
GAAACGAACGGAAGACATCCCAATTCGCAGTTCTGCTCTCACCCTTCCCACCCGGCTTCCTACCT
TCACCCGGTGGTCCCGAGGCATCACCCTTTACGAGAACAAAGAAAGCATCGTAACCCATAGAAGA
AACTCCGGCCTCGTAACACACACACACACAATTCAAACACACACAATTCAAACAACCTCTTCACA
TTACCCCATTCACTCAGATCACCCACCCATTACTTCCATACTCGTCTCCCATTAGCCTACGTATT
ACCCCAAACAGGCGCCAAAACCAAACAATAAACCATACAAACAAACCCTGGACACCCCTTGACAC
CCCTAGCCACCACCAACACTCTACGCCCTCATTACACCCCTATCC
Found at i:20705 original size:15 final size:15
Alignment explanation
Indices: 20685--20717 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
20675 CGTAACACAC
20685 ACACACACAATTCAA
1 ACACACACAATTCAA
20700 ACACACACAATTCAA
1 ACACACACAATTCAA
20715 ACA
1 ACA
20718 ACCTCTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.33, G:0.00, T:0.12
Consensus pattern (15 bp):
ACACACACAATTCAA
Left flanking sequence: Indices 20185 -- 20684
GGCGCCCCCTCAGACTCCCCCAACGCTTATTGTGGGGTGAGTTGTGAAGGGGTTGTGGTGGTGTA
TGGGTTAAGGGGGAAGGGTAGCCTAGAGGTGGAAGAGAAGGTGGAGACGGTGGGACGGTAGGGGT
GGAGTGGAGTGGATTAGGGCACAGGTGATTGGCTGGGGTTGGCTGGGTGGTGGCTAGGTGGTTGG
CTGGGCACTTGGTTGGGTGGTTGGGTGGTTGGCCGGGTGGTGGTGTAGGTTCTACAGATGGCTTC
TGGGTGGTGGTTTCAGTATATCAGAATTACAGTATATTCGGTTGATTCCTCAGTCAATAGCTACA
CTCGCACGACTAGTGCAATCTTCTGAAACGAACGGAAGACATCCCAATTCGCAGTTCTGCTCTCA
CCCTTCCCACCCGGCTTCCTACCTTCACCCGGTGGTCCCGAGGCATCACCCTTTACGAGAACAAA
GAAAGCATCGTAACCCATAGAAGAAACTCCGGCCTCGTAACACAC
Right flanking sequence: Indices 20718 -- 21217
ACCTCTTCACATTACCCCATTCACTCAGATCACCCACCCATTACTTCCATACTCGTCTCCCATTA
GCCTACGTATTACCCCAAACAGGCGCCAAAACCAAACAATAAACCATACAAACAAACCCTGGACA
CCCCTTGACACCCCTAGCCACCACCAACACTCTACGCCCTCATTACACCCCTATCCCATCTCCCT
TCTTCTCCACCGCCACCCCACCTTCCTCCCCGCGTTCCTAACCGGCCTGTGATCATCTTTCGCAG
CCAAAAGAAAAGAGCCCACCACGGGTGCAACCCACCACCACACCCACCACAAATCCCCACCCACC
GTAATCACCCACACCCCCCCACCTCTACACCAACCCCATCTTCCCCCATCTCCCCCACCCCCTCT
ACACCACCTTCTTCACCCACTCGTCACCNTTCCCGTTTGGGCATTTTTCGCGCGCGACCCGCGAC
GTGTTAGTCTCGAAAATACCCAGGACCCCACATCGACCGAGTTCT
Found at i:23383 original size:6 final size:6
Alignment explanation
Indices: 23372--23410 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
23362 AAGCCCGAGG
23372 AGGAGA AGGAGA AGGAGA AGG-GAA AGGAGA AGGAGA AGG
1 AGGAGA AGGAGA AGGAGA AGGAG-A AGGAGA AGGAGA AGG
23411 GTGAGGGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 1 0.03
6 29 0.94
7 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (6 bp):
AGGAGA
Left flanking sequence: Indices 22872 -- 23371
GGACGACATGGCCATCATGAACTTGAAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGG
CGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGACGGGTGCTGCAGTTGGCC
ACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCA
CTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACGC
CCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAG
GCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCCCAGGA
GAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACCCCGGCGGACA
CCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGG
Right flanking sequence: Indices 23411 -- 23910
GTGAGGGAGAGGACAAGGACAAGGGCGAGGACAAGGGCAAGGGCGAGGACAAGGAAGAGGACAAG
CCTGAGAAGGGCGAAGAGCCTGAGGACAAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGA
AGACAAGCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCT
CGACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTC
ATGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGG
CTCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACT
ACCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGAC
ATGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGAC
Found at i:23417 original size:24 final size:23
Alignment explanation
Indices: 23372--23440 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
23362 AAGCCCGAGG
*
23372 AGGAGAAGGAGAAGGAGAAGGGAA
1 AGGAGAAGGAGAAGG-GGAGGGAA
*
23396 AGGAGAAGGAGAAGGGTGAGGGAG
1 AGGAGAAGGAGAAGGG-GAGGGAA
* *
23420 AGGACAAGGACAAGGGCGAGG
1 AGGAGAAGGAGAAGGG-GAGG
23441 ACAAGGGCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.42, C:0.04, G:0.52, T:0.01
Consensus pattern (23 bp):
AGGAGAAGGAGAAGGGGAGGGAA
Left flanking sequence: Indices 22872 -- 23371
GGACGACATGGCCATCATGAACTTGAAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGG
CGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGACGGGTGCTGCAGTTGGCC
ACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCA
CTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACGC
CCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAG
GCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCCCAGGA
GAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACCCCGGCGGACA
CCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGG
Right flanking sequence: Indices 23441 -- 23940
ACAAGGGCAAGGGCGAGGACAAGGAAGAGGACAAGCCTGAGAAGGGCGAAGAGCCTGAGGACAAG
GACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAAGACAAGCCTGACAAGCCCGACTCCGACTC
CGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTCGACGTCGGACGCCGGCGACGGCTCCAACA
AACAGCTGACCGTCGACCACACCGGGCAGTACTTCATGGCACTCGCCGTGGTGGGGTTCATCGTG
GTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGGCCGGAGAAAGCGCCGGCGCCGCGA
CGACTACGAGTTCGACATCATCCCCGGCGAGGACTACCTGGACTCCGAGGACGACGGGTCGGACG
ACCTGGTCAACCTCCACCAGCACAACGCCCGCGACATGCGCCAGGACGAGCAGCGGCTCTACGAC
GAGCTCAACGCGGACGTGTTGCCCACGCAGGGCGAGGAGATGTTT
Found at i:23423 original size:18 final size:18
Alignment explanation
Indices: 23377--23411 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
23367 CGAGGAGGAG
23377 AAGGAGAAGGAGAAGGGA
1 AAGGAGAAGGAGAAGGGA
23395 AAGGAGAAGGAGAAGGG
1 AAGGAGAAGGAGAAGGG
23412 TGAGGGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (18 bp):
AAGGAGAAGGAGAAGGGA
Left flanking sequence: Indices 22877 -- 23376
ACATGGCCATCATGAACTTGAAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGGCGCTG
CACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGACGGGTGCTGCAGTTGGCCACGTT
CCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCACTGGG
GCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACGCCCGTG
GAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAGGCGGA
GGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCCCAGGAGAAGC
CCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACCCCGGCGGACACCAAG
GGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGGAGGAG
Right flanking sequence: Indices 23412 -- 23911
TGAGGGAGAGGACAAGGACAAGGGCGAGGACAAGGGCAAGGGCGAGGACAAGGAAGAGGACAAGC
CTGAGAAGGGCGAAGAGCCTGAGGACAAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAA
GACAAGCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTC
GACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCA
TGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGC
TCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTA
CCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACA
TGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACG
Found at i:23428 original size:18 final size:18
Alignment explanation
Indices: 23414--23464 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
23404 GAGAAGGGTG
*
23414 AGGGAGAGGACAAGGACA
1 AGGGAGAGGACAAGGGCA
*
23432 AGGGCGAGGACAAGGGCA
1 AGGGAGAGGACAAGGGCA
*
23450 AGGGCGAGGACAAGG
1 AGGGAGAGGACAAGG
23465 AAGAGGACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.37, C:0.14, G:0.49, T:0.00
Consensus pattern (18 bp):
AGGGAGAGGACAAGGGCA
Left flanking sequence: Indices 22914 -- 23413
GACGGTGCTTGTCAACATCGGGGCGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGC
TGGGACGGGTGCTGCAGTTGGCCACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCG
TGGACGTTCATGAGCGTGGTGCACTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGAC
GGCGGACGACCTGAAGAACACGCCCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGG
GCGAGAGCGACGACGCCAAGAAGGCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGC
CGGGTCAAGTTGGCAGCCCAGGAGAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGA
GACCCACGACACCCCGGCGGACACCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCG
AGGAGGAGAAGGAGAAGGAGAAGGGAAAGGAGAAGGAGAAGGGTG
Right flanking sequence: Indices 23465 -- 23964
AAGAGGACAAGCCTGAGAAGGGCGAAGAGCCTGAGGACAAGGACAAGCCTGACAAGCCTGAGGAC
AAGGAGGGCGAAGACAAGCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCC
GCCGCAGCCCTCGACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCG
GGCAGTACTTCATGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCAC
AAGACCCCGGGCTCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCC
CGGCGAGGACTACCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACA
ACGCCCGCGACATGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCC
ACGCAGGGCGAGGAGATGTTTTCGATTGGCGGCGACGACGACGAG
Found at i:23429 original size:6 final size:6
Alignment explanation
Indices: 23420--23475 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
23410 GGTGAGGGAG
* * * * *
23420 AGGACA AGGACA AGGGCG AGGACA AGGGCA AGGGCG AGGACA AGGA-A
1 AGGACA AGGACA AGGACA AGGACA AGGACA AGGACA AGGACA AGGACA
23467 GAGGACA AG
1 -AGGACA AG
23476 CCTGAGAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
5 1 0.03
6 38 0.95
7 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.45, T:0.00
Consensus pattern (6 bp):
AGGACA
Left flanking sequence: Indices 22920 -- 23419
GCTTGTCAACATCGGGGCGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGAC
GGGTGCTGCAGTTGGCCACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACG
TTCATGAGCGTGGTGCACTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGA
CGACCTGAAGAACACGCCCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGA
GCGACGACGCCAAGAAGGCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTC
AAGTTGGCAGCCCAGGAGAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCA
CGACACCCCGGCGGACACCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGGAGG
AGAAGGAGAAGGAGAAGGGAAAGGAGAAGGAGAAGGGTGAGGGAG
Right flanking sequence: Indices 23476 -- 23975
CCTGAGAAGGGCGAAGAGCCTGAGGACAAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGA
AGACAAGCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCT
CGACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTC
ATGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGG
CTCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACT
ACCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGAC
ATGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCCACGCAGGGCGA
GGAGATGTTTTCGATTGGCGGCGACGACGACGAGCCGCCGGCGAG
Found at i:24339 original size:100 final size:102
Alignment explanation
Indices: 24101--24374 Score: 314
Period size: 100 Copynumber: 2.7 Consensus size: 102
24091 TACGTGACGG
* ** * *
24101 TTGAATAGAACAGAGAAGAGTAGGTGGGGTGATGGAATGGTAGAC--AAGTGAAATTATGGCTAG
1 TTGAATAGAACAGAGAAGAGAAGGT-GAATGATAGAATGGTAGACGAAAGTGAAAATATGGCTAG
*
24164 TGTGAATGAGCTGGTTTTAGACCTGATATTTCCACCTACA
65 TGTGAATGAGCTGGTGTTAGACCTGA-ATTT-CACCTACA
* * *
24204 ATGTAA-A-AACAGAGAAGAGAAAGGTGAATAATAGAATGGTAGACGAAAGCGAAAATATGGCTA
1 TTG-AATAGAACAGAGAAGAG-AAGGTGAATGATAGAATGGTAGACGAAAGTGAAAATATGGCTA
*
24267 GTGTGAATGAGCTGG-GTTAGACTTG-A-TT-ACCTACA
64 GTGTGAATGAGCTGGTGTTAGACCTGAATTTCACCTACA
* *
24302 TTGAATAGAATCAGAGAAGAGAATGGTGATTGATAGAATGGTGGACGAAAGTG-AAATATGGCTA
1 TTGAATAGAA-CAGAGAAGAGAA-GGTGAATGATAGAATGGTAGACGAAAGTGAAAATATGGCTA
24366 GTGTGAATG
64 GTGTGAATG
24375 TAGCGAGAGC
Statistics
Matches: 148, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
97 2 0.01
98 10 0.07
99 24 0.16
100 37 0.25
101 1 0.01
102 27 0.18
103 15 0.10
104 32 0.22
ACGTcount: A:0.37, C:0.08, G:0.30, T:0.24
Consensus pattern (102 bp):
TTGAATAGAACAGAGAAGAGAAGGTGAATGATAGAATGGTAGACGAAAGTGAAAATATGGCTAGT
GTGAATGAGCTGGTGTTAGACCTGAATTTCACCTACA
Left flanking sequence: Indices 23601 -- 24100
GCCCTCGACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGT
ACTTCATGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACC
CCGGGCTCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGA
GGACTACCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCC
GCGACATGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCCACGCAG
GGCGAGGAGATGTTTTCGATTGGCGGCGACGACGACGAGCCGCCGGCGAGCCCGCACAAGAAGGA
CGCGCCCGGGTCTCCCGAGACCCCCGACGACTCCCACAACGGCGACGACCTGAAGCCCACGAGCC
GGCTTCTTCTGGATGTACAATAGACGGTTAATAGATACGTGACGG
Right flanking sequence: Indices 24375 -- 24874
TAGCGAGAGCTGGGTTTTTGTAGAATTGGTAGTTTTACCTACATTGCATTTAACAGTTGCATTCC
TAGAAAATAGAACAATTGAATGTGCCAGCCAGGCCATTACCGCTAAAAAAACTTTGAATAACCAT
TTCCAAGTCTACGATTTTTTACACAGTAGACACCCATTTTCTACACCATAGACACCACACCCTAA
CTACCACCACCACAACACGCGCGTACAGCAACCGCCTGTCGCCTGCGTCGCAGCCGTTTCCATCG
CCTTCTACATACGCCAGCTAAAAATCCAAACCACCAAAAACCCACACCACACAAACACCATTGCC
ACAAACACAACCCTAATATAAACAGCCCTACAATTAACCCACCCAAAACGCCTACCCAACCCCTT
TCCACCTCTTTTCGCCAACCCTAACCTCGCCCTTACCCTGTGCATCGCGTCAGTTAGGGCTAATT
TTCATCCCGCGCACGACCCATCGCGACGCCAGCTATAAAAGGACA
Found at i:24549 original size:22 final size:22
Alignment explanation
Indices: 24518--24560 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24508 CAAGTCTACG
*
24518 ATTTTTTACA-CAGTAGACACCC
1 ATTTTCTACACCA-TAGACACCC
24540 ATTTTCTACACCATAGACACC
1 ATTTTCTACACCATAGACACC
24561 ACACCCTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (22 bp):
ATTTTCTACACCATAGACACCC
Left flanking sequence: Indices 24018 -- 24517
CGACTCCCACAACGGCGACGACCTGAAGCCCACGAGCCGGCTTCTTCTGGATGTACAATAGACGG
TTAATAGATACGTGACGGTTGAATAGAACAGAGAAGAGTAGGTGGGGTGATGGAATGGTAGACAA
GTGAAATTATGGCTAGTGTGAATGAGCTGGTTTTAGACCTGATATTTCCACCTACAATGTAAAAA
CAGAGAAGAGAAAGGTGAATAATAGAATGGTAGACGAAAGCGAAAATATGGCTAGTGTGAATGAG
CTGGGTTAGACTTGATTACCTACATTGAATAGAATCAGAGAAGAGAATGGTGATTGATAGAATGG
TGGACGAAAGTGAAATATGGCTAGTGTGAATGTAGCGAGAGCTGGGTTTTTGTAGAATTGGTAGT
TTTACCTACATTGCATTTAACAGTTGCATTCCTAGAAAATAGAACAATTGAATGTGCCAGCCAGG
CCATTACCGCTAAAAAAACTTTGAATAACCATTTCCAAGTCTACG
Right flanking sequence: Indices 24561 -- 25060
ACACCCTAACTACCACCACCACAACACGCGCGTACAGCAACCGCCTGTCGCCTGCGTCGCAGCCG
TTTCCATCGCCTTCTACATACGCCAGCTAAAAATCCAAACCACCAAAAACCCACACCACACAAAC
ACCATTGCCACAAACACAACCCTAATATAAACAGCCCTACAATTAACCCACCCAAAACGCCTACC
CAACCCCTTTCCACCTCTTTTCGCCAACCCTAACCTCGCCCTTACCCTGTGCATCGCGTCAGTTA
GGGCTAATTTTCATCCCGCGCACGACCCATCGCGACGCCAGCTATAAAAGGACAAGATTTTCCAC
CAGTTTTAGTATCTGCTGGGATGGCCACAAGAAATGGTACCGTCGGGCGAAGCGTTTGCCAGCCG
GAACCGGTTCTTATGGCCACTCCAGGAGGTCGTGAAGATGATGAAGCTAAGTTTACTTCTTTCCC
AGTCCGATACGACTATGACGACAGGGTTGAAAACCGCGGTCGGTG
Found at i:25463 original size:34 final size:35
Alignment explanation
Indices: 25420--25494 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 35
25410 GACTCACAAA
*
25420 GTGTCTACGTACTTTTCCACGATTGACAACT-TAG
1 GTGTCTACGTACTTTTCCACGATTGACAACTGAAG
* *
25454 GTGTCTACGTGCTTTTTCACGATTGACAACTGAAG
1 GTGTCTACGTACTTTTCCACGATTGACAACTGAAG
25489 GTGTCT
1 GTGTCT
25495 TAATGTCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
34 29 0.78
35 8 0.22
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (35 bp):
GTGTCTACGTACTTTTCCACGATTGACAACTGAAG
Left flanking sequence: Indices 24920 -- 25419
TGGTACCGTCGGGCGAAGCGTTTGCCAGCCGGAACCGGTTCTTATGGCCACTCCAGGAGGTCGTG
AAGATGATGAAGCTAAGTTTACTTCTTTCCCAGTCCGATACGACTATGACGACAGGGTTGAAAAC
CGCGGTCGGTGGATCCGCTCTGTTTGCCCACGAGGCAGACAGAGTCACCGCTGCTTATACTTGCC
AGTATTTACGTTTCTGATTCACATTGTCCCACGGGAGACAGCCCGCTCTCGCCGAGCGCGGGGTG
ACTCCGGTGTCGACAGTGCCGAGATTTGCCAGTGATGAGATTTCCATAACATTCGCAGTTTCCCC
GGTAGTGCACGAACGAACCCATGTTAGTGTAACGGTGACCGCGCATTTGACCTTCCATGGATGTC
TGAGGCCTAGTATCTCGAGTAGTGTAGATTCCTGAGTAGCTTCTTTTCGACACCCGAGTTCCAAG
TTCTTCTGTTCAGAAGGATGGGGGTGGACCTTTACGACTCACAAA
Right flanking sequence: Indices 25495 -- 25994
TAATGTCTTCTCTACACGATGAGACGTGTCCACTCAATTTCTTACAACCAGCGAAGAGCTGATAG
AAAGATAGCTAGCTGGATGCGCTATCGCTTCTTCGTGGCTCGACACAGGGTTTACTCAAATGGTG
TGCTTTTAACATACCTTTGGCACCACTTTTGGTCGTATCAAACAGGCCATAATACCAGTAGAACC
CTGTGAATCGGTAGAACTCCAAGCCTATAGTAGTACCCGTCTCAGCTGGGGGGCCGCAAGCGGCG
CCCCCCAGACCCCCCAACGCTTGTAACTTTGAGTCTTCAATTGCTTAGAATCCTATTTATCGGTG
GTGCAAACGGATGGTTGCAAACGATGGCTGCGAACTGGCCACATTACGATCAACAAACTATCGGT
GGAACTCCATCGCCAACAGGCGAGACCCCCAACGCTTGTAACTTTCATCGCGTCAATTGATTGCT
TATAATTCTATCTATCGGAAGTACTTGCTAACGGAAACGGGCTGC
Found at i:29443 original size:15 final size:15
Alignment explanation
Indices: 29415--29449 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
29405 TCAGCTCTGT
*
29415 CCCTGTGACAGCGAC
1 CCCTGCGACAGCGAC
*
29430 CCCTGCGACGGCGAC
1 CCCTGCGACAGCGAC
29445 CCCTG
1 CCCTG
29450 TGACCGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.46, G:0.29, T:0.11
Consensus pattern (15 bp):
CCCTGCGACAGCGAC
Left flanking sequence: Indices 28915 -- 29414
AGGTAGAAGGAGCACTCAGATCAAAGTCAAAAACAAAGAGACGTTTGCCAGCATGCGAGAGTGCC
AGTCTCCTAACGTAATTCATCTCGCTATCCGCTACTCCCGTGGTACCCTCGGCAATACCGTCACA
TGGGCGATCCCCCAAACAAGCAGAAATTCTCGGCAATCCTCAGGGTCCGCCGAGTGACACCTGTG
AAACACAAGGGCGGCCGCCGGCAGTCTATCCCTCTATCCGAGATCCCCACAAATCGCATGTCTCA
TAACGTCACTGATAAGGTATTTTGAGCCTTGTTTCTGGTTGGGGGATCCGGGTACCCGAGATGAG
CACCACGAAGCCTGATTGATAAAGCAACGACGGCGTCTAGATTTAGTTTAGTCTTCTGTGGGTGG
TGCAGCGAGGCACGGTGGCCACTGGACACGACCACGGCACGGCTATAGCAAGCGCGGCTGGAACC
AGGGACAGCCACCACAGGGCCGGGGGATCAGCGAGTCAGCTCTGT
Right flanking sequence: Indices 29450 -- 29949
TGACCGCTACAACCCCTGACGATTAATTACATCCCTGGGGTTGTGTCATTGTAGCCAGCTATTGC
CGTGACTAGCGTCATAATCCCGCTGCATACACACCCAACGGCTGTAGTATGTGTCTAGGGCAGGG
CACTTAGGCAGGTGGCCATTGTAGTCAGGCAGGTTGAGGACGACACAGGAACAAACAACGACCGG
AAACAACCAACAACGAACAACCATCCACGGAACAACCAGCCACGGCCCAGATTGTTCCTCACCCC
ACTCAGGCACCGCCACCCGAACGTCCGATCCGACAGGTCGTGCCACCCGGCTATACTCACCCACG
AGCCGGGTCGAACTGACCGTTTCAGACACCGCCGTGGTCCTGTCGGAGCATTGTTTGCTCAGACA
CCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAAAAAAACATGCACGGTGGCTGTAATCGAGTC
GAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTGGGCCACCAA
Found at i:29665 original size:14 final size:15
Alignment explanation
Indices: 29627--29682 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
29617 GGACGACACA
* *
29627 GGAACAAACAACGACC
1 GGAACAACCAAC-AAC
29643 GGAAACAACCAACAAC
1 GG-AACAACCAACAAC
* *
29659 -GAACAACCATCCAC
1 GGAACAACCAACAAC
29673 GGAACAACCA
1 GGAACAACCA
29683 GCCACGGCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 11 0.32
15 10 0.29
16 4 0.12
17 9 0.26
ACGTcount: A:0.50, C:0.34, G:0.14, T:0.02
Consensus pattern (15 bp):
GGAACAACCAACAAC
Left flanking sequence: Indices 29127 -- 29626
CCGGCAGTCTATCCCTCTATCCGAGATCCCCACAAATCGCATGTCTCATAACGTCACTGATAAGG
TATTTTGAGCCTTGTTTCTGGTTGGGGGATCCGGGTACCCGAGATGAGCACCACGAAGCCTGATT
GATAAAGCAACGACGGCGTCTAGATTTAGTTTAGTCTTCTGTGGGTGGTGCAGCGAGGCACGGTG
GCCACTGGACACGACCACGGCACGGCTATAGCAAGCGCGGCTGGAACCAGGGACAGCCACCACAG
GGCCGGGGGATCAGCGAGTCAGCTCTGTCCCTGTGACAGCGACCCCTGCGACGGCGACCCCTGTG
ACCGCTACAACCCCTGACGATTAATTACATCCCTGGGGTTGTGTCATTGTAGCCAGCTATTGCCG
TGACTAGCGTCATAATCCCGCTGCATACACACCCAACGGCTGTAGTATGTGTCTAGGGCAGGGCA
CTTAGGCAGGTGGCCATTGTAGTCAGGCAGGTTGAGGACGACACA
Right flanking sequence: Indices 29683 -- 30182
GCCACGGCCCAGATTGTTCCTCACCCCACTCAGGCACCGCCACCCGAACGTCCGATCCGACAGGT
CGTGCCACCCGGCTATACTCACCCACGAGCCGGGTCGAACTGACCGTTTCAGACACCGCCGTGGT
CCTGTCGGAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAAAAA
AACATGCACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTGGG
CCACCAATGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGTCGTTGGTTCG
TGGTTCTCCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACTGTTCGTATCTGTACCTCTA
CGCGGCCCATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTGTGTCGTCTGTTCTCT
GTCCTCTGTTTCCTTTATCCTATATCTCCTTTGTATCCTCTGTTG
Found at i:29679 original size:15 final size:15
Alignment explanation
Indices: 29627--29689 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
29617 GGACGACACA
* *
29627 GGAACAAACAACGACC
1 GGAACAACCAACCA-C
*
29643 GGAAACAACCAACAAC
1 GG-AACAACCAACCAC
*
29659 -GAACAACCATCCAC
1 GGAACAACCAACCAC
*
29673 GGAACAACCAGCCAC
1 GGAACAACCAACCAC
29688 GG
1 GG
29690 CCCAGATTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 11 0.28
15 16 0.40
16 3 0.08
17 10 0.25
ACGTcount: A:0.46, C:0.35, G:0.17, T:0.02
Consensus pattern (15 bp):
GGAACAACCAACCAC
Left flanking sequence: Indices 29127 -- 29626
CCGGCAGTCTATCCCTCTATCCGAGATCCCCACAAATCGCATGTCTCATAACGTCACTGATAAGG
TATTTTGAGCCTTGTTTCTGGTTGGGGGATCCGGGTACCCGAGATGAGCACCACGAAGCCTGATT
GATAAAGCAACGACGGCGTCTAGATTTAGTTTAGTCTTCTGTGGGTGGTGCAGCGAGGCACGGTG
GCCACTGGACACGACCACGGCACGGCTATAGCAAGCGCGGCTGGAACCAGGGACAGCCACCACAG
GGCCGGGGGATCAGCGAGTCAGCTCTGTCCCTGTGACAGCGACCCCTGCGACGGCGACCCCTGTG
ACCGCTACAACCCCTGACGATTAATTACATCCCTGGGGTTGTGTCATTGTAGCCAGCTATTGCCG
TGACTAGCGTCATAATCCCGCTGCATACACACCCAACGGCTGTAGTATGTGTCTAGGGCAGGGCA
CTTAGGCAGGTGGCCATTGTAGTCAGGCAGGTTGAGGACGACACA
Right flanking sequence: Indices 29690 -- 30189
CCCAGATTGTTCCTCACCCCACTCAGGCACCGCCACCCGAACGTCCGATCCGACAGGTCGTGCCA
CCCGGCTATACTCACCCACGAGCCGGGTCGAACTGACCGTTTCAGACACCGCCGTGGTCCTGTCG
GAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAAAAAAACATGC
ACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTGGGCCACCAA
TGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGTCGTTGGTTCGTGGTTCT
CCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACTGTTCGTATCTGTACCTCTACGCGGCC
CATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTGTGTCGTCTGTTCTCTGTCCTCT
GTTTCCTTTATCCTATATCTCCTTTGTATCCTCTGTTGTCTCTCT
Found at i:30319 original size:11 final size:11
Alignment explanation
Indices: 30303--30343 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
30293 CCACCACTCA
*
30303 CCACCACTTTC
1 CCACCACCTTC
30314 CCACCACCTTC
1 CCACCACCTTC
30325 CCACCACCTT-
1 CCACCACCTTC
30335 CCACCACCT
1 CCACCACCT
30344 CTCCTCTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.20, C:0.61, G:0.00, T:0.20
Consensus pattern (11 bp):
CCACCACCTTC
Left flanking sequence: Indices 29803 -- 30302
CCGCCGTGGTCCTGTCGGAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAA
CAGGCAAAAAAACATGCACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGT
CTGGTTTGGGCCACCAATGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGT
CGTTGGTTCGTGGTTCTCCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACTGTTCGTATC
TGTACCTCTACGCGGCCCATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTGTGTCG
TCTGTTCTCTGTCCTCTGTTTCCTTTATCCTATATCTCCTTTGTATCCTCTGTTGTCTCTCTATT
GTCTTCTCTTCTCTGTTCCCATCTCTCTTCCCACTCCATCTACGTACTTCCGATCCACCTCTTCG
TACCTCGCGACGCCTCGGGAAAACCTAACCCAAAACCACCACTCA
Right flanking sequence: Indices 30344 -- 30843
CTCCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCC
TTTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCC
CCGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTAC
TACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCT
CACCCCGCAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGA
CGACACTGGCAACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCCCCCGAC
TACTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGTGCCAGGCCAAGCACCAGG
CCAGCCACCGCTCGGACAGCCCGTGCCCGGCCAGCCAGCCCCGCT
Found at i:30331 original size:22 final size:21
Alignment explanation
Indices: 30303--30343 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
30293 CCACCACTCA
*
30303 CCACCACTTTCCCACCACCTTC
1 CCACCACCTT-CCACCACCTTC
30325 CCACCACCTTCCACCACCT
1 CCACCACCTTCCACCACCT
30344 CTCCTCTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.20, C:0.61, G:0.00, T:0.20
Consensus pattern (21 bp):
CCACCACCTTCCACCACCTTC
Left flanking sequence: Indices 29803 -- 30302
CCGCCGTGGTCCTGTCGGAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAA
CAGGCAAAAAAACATGCACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGT
CTGGTTTGGGCCACCAATGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGT
CGTTGGTTCGTGGTTCTCCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACTGTTCGTATC
TGTACCTCTACGCGGCCCATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTGTGTCG
TCTGTTCTCTGTCCTCTGTTTCCTTTATCCTATATCTCCTTTGTATCCTCTGTTGTCTCTCTATT
GTCTTCTCTTCTCTGTTCCCATCTCTCTTCCCACTCCATCTACGTACTTCCGATCCACCTCTTCG
TACCTCGCGACGCCTCGGGAAAACCTAACCCAAAACCACCACTCA
Right flanking sequence: Indices 30344 -- 30843
CTCCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCC
TTTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCC
CCGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTAC
TACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCT
CACCCCGCAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGA
CGACACTGGCAACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCCCCCGAC
TACTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGTGCCAGGCCAAGCACCAGG
CCAGCCACCGCTCGGACAGCCCGTGCCCGGCCAGCCAGCCCCGCT
Found at i:30850 original size:21 final size:21
Alignment explanation
Indices: 30824--30894 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
30814 ACAGCCCGTG
* *
30824 CCCGGCCAGCCAGCCCCGCTA
1 CCCGGCCAGCAAGCACCGCTA
30845 CCCGGCCAGCAAGCACCGCTA
1 CCCGGCCAGCAAGCACCGCTA
*
30866 CCGGGCCAGCAAGCACCGCTA
1 CCCGGCCAGCAAGCACCGCTA
*
30887 CCAGGCCA
1 CCCGGCCA
30895 CCACATCCCG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.21, C:0.49, G:0.25, T:0.04
Consensus pattern (21 bp):
CCCGGCCAGCAAGCACCGCTA
Left flanking sequence: Indices 30324 -- 30823
CCCACCACCTTCCACCACCTCTCCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACG
TCGTATCCCATGCCCGTTCCTTTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAAT
ATTTTCTGGAGCGAAATTCCCCGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCA
CCATGGACCAGCCGTACTACTACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCC
CCGCAACCAGCGCCCCAGCTCACCCCGCAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAA
CCAGGCTACCCCGTCGCTGACGACACTGGCAACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACA
TGGTGATGATGCCCCCCGACTACTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCT
GTGCCAGGCCAAGCACCAGGCCAGCCACCGCTCGGACAGCCCGTG
Right flanking sequence: Indices 30895 -- 31394
CCACATCCCGCACCCGCCGCCCCCGGTCAACGGACACACTCCCTTCGGAGCGTTCGCTGGCCAGC
AGCTCGCGTCGCCGGGGGACAAAAAACGCCTGTTGCTGCTGCTGGCTCCGTCCCAGCCGTCGCGT
CTGGCCGCCACCTACCCGCGCAAGCGCGCGGTGACCGCGTGTGACACCTGTAGACTCAAGAAGGT
CAAGTGCGACAACGTGCGCCCGCGGTGCGGGCTGTGCACCAAGAACGGGATCACCAACTGCCACT
ACCGCACCGACGACCTCCAGAAGGACTACTCGCTGTACGACCCTGCGTCGCTCAACATCCTCACC
AAGCTCGACGTCATCTTGCGCGACTTGAGCGAGCTCAAGGGGGGCCCCGTGGGCACAGCGCCGGC
CCAGAACTGCTTCCGGTTCGACCGGTGCTTCTGGGACATGCTGTGCACGCTGGTGATGCGGTGGG
AGTGTCTTGGCGACGCCATCAACGTGTCGCCCGGGTACACCGACG
Found at i:33641 original size:21 final size:21
Alignment explanation
Indices: 33604--33696 Score: 127
Period size: 21 Copynumber: 4.5 Consensus size: 21
33594 CGAGCAAGGT
* *
33604 GAGGGCAGAGACTGTCGAGGC
1 GAGGGCTGAGGCTGTCGAGGC
*
33625 GATGGCTGAGGCTGTCGAGGC
1 GAGGGCTGAGGCTGTCGAGGC
33646 GAGGGCTGAGGCTGTCGAGGC
1 GAGGGCTGAGGCTGTCGAGGC
*
33667 GAGGGCTGA-GCTGCCG-GGAC
1 GAGGGCTGAGGCTGTCGAGG-C
33687 GAGGGCTGAG
1 GAGGGCTGAG
33697 CAGCCGAGCC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
19 2 0.03
20 16 0.25
21 47 0.72
ACGTcount: A:0.17, C:0.19, G:0.51, T:0.13
Consensus pattern (21 bp):
GAGGGCTGAGGCTGTCGAGGC
Left flanking sequence: Indices 33104 -- 33603
GCGGCGGGCGCGCGGGCCAAGATCCTCAAGGTGTTCTTCCAGCAGGTGATTTCGTTGCCCAAGAT
GCACATGCCCAAGCTCATGGCGCACCGCCACCCCGGGCTGTGGTTTTTGTTGCGCACGCTGTTTA
TTCTGACGATCAACTTGGTGTTGTTGCACCGCAAGCTCATGGGGATGGCGGAGGACGAGCACCAG
GCGGCGATGTTTTCGCAGATTGTGCTGCGGGACCTGTTGGTGCACACGTTGGAGCACTTGCTCAT
TGTGTTTGAGTACTGGCACAACGAGTGTCCGGACACTGCGGTGTACAGCGACTACGCGAAGCGGC
TTCTCGAGACGTTGTGAGCAGTCGAGACGGGGAGAATTCGAAACGGGAGGGTTTGAGACAAGGAA
GTGGGTTTGAGACAGGATGAGGCTTTTTGAGCGTAGGTCAGGTATAAGCGGCGAGGACAGCAGGT
CGGCTGAACCGGCGAGCGAGAGCAGCAGGCTGAGGCGAGCAAGGT
Right flanking sequence: Indices 33697 -- 34196
CAGCCGAGCCTCCGTTGCATTGACAGGGTAGGTGAAAGAGTGATAGTAATAGAGATGAAAATAGA
CACGAGGCTGGATGAAGGGTAGAGCAGAGAAAGAGGAAGCTGGACAGGATGAAGGCTGAAACAGC
CCGAGACAGGCAGAGAGCAGACAGAGAGCAGGATGAGACAGGCGGTGATAGGCTGAGATAGCTGA
GATAGACTGAGAGCAAAGGTGGAGTGGAGACTTCAGAAAATGTTCATAGGACTAAATATGGGTTT
GATCGTGTAAAACACTGTAAGCGCAAGGGGATGACATGACCGAGACCATTACAGTCGCAGGTCAC
ATTCTCGGCCACTGAGACATTATCCGACATGTCACCCCTCCTCTTGGTAGCAAGCGCATACCCCG
CCTGTCAATCATGGTCTGATTCCGGTTTCAACGTGTCTGTTATACGTCACATCCCCAACGGCTTA
GCTCCGTGCACCTAAGCGAGGCGCCAGTTCCCACCCAAACTACAC
Found at i:34989 original size:8 final size:8
Alignment explanation
Indices: 34973--35015 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
34963 GGTGGTGGCG
*
34973 GGTGGGGT
1 GGTGTGGT
34981 GGTGTGGT
1 GGTGTGGT
*
34989 GGGGTGGT
1 GGTGTGGT
*
34997 GGGGTGGT
1 GGTGTGGT
*
35005 GGTGTGAT
1 GGTGTGGT
35013 GGT
1 GGT
35016 TGAGGCTACG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.02, C:0.00, G:0.67, T:0.30
Consensus pattern (8 bp):
GGTGTGGT
Left flanking sequence: Indices 34473 -- 34972
CGTACCCGTGTCACCACCCCCAACCAACCCCATGCTAACCTCTAGTGGGCCGGGTGATGAAGGCA
GCCCTTCCCCCCCAAGGAAAGCTCTCGAAAGAGCTGAAAGAATGCATGCAAGAGTGTGTGTCCGA
GTTCATCCTCTTCATCACGTCGCAGCTGAGCGACCGGTGCATGTTGGAGAAGCGCAAGACCATGA
ACGGCGAGGACATTTTGTGGCTGATGTACACCCTCGGGTTCGAGCACTACGCCGAGATGCTCAAG
ATCTACTTGGCCAAGTACCGTGAGTACGAGGCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCCG
CCGCAAGCGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGACGAGTCCGAGTCGGTGTCGGAGGAGG
TGTCGCCCGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGCGAGTGGTTC
GAAGAGTGGATTTAGAGGGCTGGTGGCTGGTAGTTGGTGGTGGCG
Right flanking sequence: Indices 35016 -- 35515
TGAGGCTACGAGGCTATGGACCGAGGTATGAGGCTATGACTGAGGGTATGAGGCAATGAGCTTTG
CAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTCGTTGCG
TGGATTGTCGTAGTGGATTGTTGTTGCGTGGATTGTTGCGAGGCATTGCTGTTGCGAGGCATTGC
CGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACTAGTCTTAGCACCATGGCTACGA
ACAAGCCTTCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACTCAATTGCCCAAC
CACCCAATTGCCCAACCCCCTAACTGCCTAACTACCCATTTACCCATTTACCCATCTACCCAACC
ACTTACCCAACCACTTACCCAACCACTTACCCAACCACCTACCCAACCCCCCTTGCCACCCCCAT
CGACCCATACAGTCACCTCTACCAGCCAGCATTCACTTCTCAAAC
Found at i:34991 original size:13 final size:13
Alignment explanation
Indices: 34972--35008 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
34962 TGGTGGTGGC
34972 GGGTGGGGTGGTG
1 GGGTGGGGTGGTG
*
34985 TGGTGGGGTGGTG
1 GGGTGGGGTGGTG
34998 GGGTGGTGGTG
1 GGGTGG-GGTG
35009 TGATGGTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.00, C:0.00, G:0.73, T:0.27
Consensus pattern (13 bp):
GGGTGGGGTGGTG
Left flanking sequence: Indices 34472 -- 34971
ACGTACCCGTGTCACCACCCCCAACCAACCCCATGCTAACCTCTAGTGGGCCGGGTGATGAAGGC
AGCCCTTCCCCCCCAAGGAAAGCTCTCGAAAGAGCTGAAAGAATGCATGCAAGAGTGTGTGTCCG
AGTTCATCCTCTTCATCACGTCGCAGCTGAGCGACCGGTGCATGTTGGAGAAGCGCAAGACCATG
AACGGCGAGGACATTTTGTGGCTGATGTACACCCTCGGGTTCGAGCACTACGCCGAGATGCTCAA
GATCTACTTGGCCAAGTACCGTGAGTACGAGGCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCC
GCCGCAAGCGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGACGAGTCCGAGTCGGTGTCGGAGGAG
GTGTCGCCCGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGCGAGTGGTT
CGAAGAGTGGATTTAGAGGGCTGGTGGCTGGTAGTTGGTGGTGGC
Right flanking sequence: Indices 35009 -- 35508
TGATGGTTGAGGCTACGAGGCTATGGACCGAGGTATGAGGCTATGACTGAGGGTATGAGGCAATG
AGCTTTGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGT
CGTTGCGTGGATTGTCGTAGTGGATTGTTGTTGCGTGGATTGTTGCGAGGCATTGCTGTTGCGAG
GCATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACTAGTCTTAGCACCATG
GCTACGAACAAGCCTTCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACTCAATT
GCCCAACCACCCAATTGCCCAACCCCCTAACTGCCTAACTACCCATTTACCCATTTACCCATCTA
CCCAACCACTTACCCAACCACTTACCCAACCACTTACCCAACCACCTACCCAACCCCCCTTGCCA
CCCCCATCGACCCATACAGTCACCTCTACCAGCCAGCATTCACTT
Found at i:35048 original size:20 final size:20
Alignment explanation
Indices: 35025--35074 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
35015 TTGAGGCTAC
35025 GAGGCTATGGACCGA-GGTAT
1 GAGGCTAT-GACCGAGGGTAT
*
35045 GAGGCTATGACTGAGGGTAT
1 GAGGCTATGACCGAGGGTAT
*
35065 GAGGCAATGA
1 GAGGCTATGA
35075 GCTTTGCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.28, C:0.12, G:0.40, T:0.20
Consensus pattern (20 bp):
GAGGCTATGACCGAGGGTAT
Left flanking sequence: Indices 34525 -- 35024
GGTGATGAAGGCAGCCCTTCCCCCCCAAGGAAAGCTCTCGAAAGAGCTGAAAGAATGCATGCAAG
AGTGTGTGTCCGAGTTCATCCTCTTCATCACGTCGCAGCTGAGCGACCGGTGCATGTTGGAGAAG
CGCAAGACCATGAACGGCGAGGACATTTTGTGGCTGATGTACACCCTCGGGTTCGAGCACTACGC
CGAGATGCTCAAGATCTACTTGGCCAAGTACCGTGAGTACGAGGCCGAGGAGGCCGCCAAGCGCC
CGCAGCGGATCCGCCGCAAGCGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGACGAGTCCGAGTCG
GTGTCGGAGGAGGTGTCGCCCGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGC
GGGCGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGCTGGTAGTTGGTGGTGGCGGGTGGGG
TGGTGTGGTGGGGTGGTGGGGTGGTGGTGTGATGGTTGAGGCTAC
Right flanking sequence: Indices 35075 -- 35574
GCTTTGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTC
GTTGCGTGGATTGTCGTAGTGGATTGTTGTTGCGTGGATTGTTGCGAGGCATTGCTGTTGCGAGG
CATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACTAGTCTTAGCACCATGG
CTACGAACAAGCCTTCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACTCAATTG
CCCAACCACCCAATTGCCCAACCCCCTAACTGCCTAACTACCCATTTACCCATTTACCCATCTAC
CCAACCACTTACCCAACCACTTACCCAACCACTTACCCAACCACCTACCCAACCCCCCTTGCCAC
CCCCATCGACCCATACAGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGA
CACCACTCCCACCCACTGACATCACACCCACTGACATCGCCCCAT
Found at i:35183 original size:15 final size:15
Alignment explanation
Indices: 35133--35181 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
35123 CGTTGTGAGT
35133 GATTGTCGTTGCGTG
1 GATTGTCGTTGCGTG
*
35148 GATTGTCG-T-AGTG
1 GATTGTCGTTGCGTG
*
35161 GATTGTTGTTGCGTG
1 GATTGTCGTTGCGTG
35176 GATTGT
1 GATTGT
35182 TGCGAGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 10 0.34
14 2 0.07
15 17 0.59
ACGTcount: A:0.10, C:0.08, G:0.39, T:0.43
Consensus pattern (15 bp):
GATTGTCGTTGCGTG
Left flanking sequence: Indices 34633 -- 35132
CGACCGGTGCATGTTGGAGAAGCGCAAGACCATGAACGGCGAGGACATTTTGTGGCTGATGTACA
CCCTCGGGTTCGAGCACTACGCCGAGATGCTCAAGATCTACTTGGCCAAGTACCGTGAGTACGAG
GCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCCGCCGCAAGCGGCCCAAGGTGCTGGAGCTGCT
GCCCGAGGACGAGTCCGAGTCGGTGTCGGAGGAGGTGTCGCCCGATGTCGGGTACGAGCCGGTGT
ACGAGACCCGGGGCTACCCGGCGGGCGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGCTGG
TAGTTGGTGGTGGCGGGTGGGGTGGTGTGGTGGGGTGGTGGGGTGGTGGTGTGATGGTTGAGGCT
ACGAGGCTATGGACCGAGGTATGAGGCTATGACTGAGGGTATGAGGCAATGAGCTTTGCAACGGG
TAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGT
Right flanking sequence: Indices 35182 -- 35681
TGCGAGGCATTGCTGTTGCGAGGCATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAA
ATACACTAGTCTTAGCACCATGGCTACGAACAAGCCTTCACACAACTAGCAAATCGCACTACTAA
TCCACCAATTGCACACTCAATTGCCCAACCACCCAATTGCCCAACCCCCTAACTGCCTAACTACC
CATTTACCCATTTACCCATCTACCCAACCACTTACCCAACCACTTACCCAACCACTTACCCAACC
ACCTACCCAACCCCCCTTGCCACCCCCATCGACCCATACAGTCACCTCTACCAGCCAGCATTCAC
TTCTCAAACGGGCTCACCCCGGACACCACTCCCACCCACTGACATCACACCCACTGACATCGCCC
CATCCCCGCGACATCCGTCAAGCAGGTACACCCAGCCACCCAGGCCCGCTCTCGCCACGACATCG
CGGCCCACGCGTCCTCGCACCGCCAAACGCGTCTCCCGCCACCAC
Found at i:35198 original size:28 final size:28
Alignment explanation
Indices: 35140--35201 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
35130 AGTGATTGTC
* *
35140 GTTGCGTGGATTGTCGTAGTGGATTGTT
1 GTTGCGTGGATTGTCGTAGTGCATTGCT
35168 GTTGCGTGGATTGTTGCG-AG-GCATTGCT
1 GTTGCGTGGATTG-T-CGTAGTGCATTGCT
35196 GTTGCG
1 GTTGCG
35202 AGGCATTGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 25 0.83
29 3 0.10
30 2 0.07
ACGTcount: A:0.10, C:0.11, G:0.40, T:0.39
Consensus pattern (28 bp):
GTTGCGTGGATTGTCGTAGTGCATTGCT
Left flanking sequence: Indices 34640 -- 35139
TGCATGTTGGAGAAGCGCAAGACCATGAACGGCGAGGACATTTTGTGGCTGATGTACACCCTCGG
GTTCGAGCACTACGCCGAGATGCTCAAGATCTACTTGGCCAAGTACCGTGAGTACGAGGCCGAGG
AGGCCGCCAAGCGCCCGCAGCGGATCCGCCGCAAGCGGCCCAAGGTGCTGGAGCTGCTGCCCGAG
GACGAGTCCGAGTCGGTGTCGGAGGAGGTGTCGCCCGATGTCGGGTACGAGCCGGTGTACGAGAC
CCGGGGCTACCCGGCGGGCGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGCTGGTAGTTGG
TGGTGGCGGGTGGGGTGGTGTGGTGGGGTGGTGGGGTGGTGGTGTGATGGTTGAGGCTACGAGGC
TATGGACCGAGGTATGAGGCTATGACTGAGGGTATGAGGCAATGAGCTTTGCAACGGGTAAAGTC
GTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTC
Right flanking sequence: Indices 35202 -- 35701
AGGCATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACTAGTCTTAGCACCA
TGGCTACGAACAAGCCTTCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACTCAA
TTGCCCAACCACCCAATTGCCCAACCCCCTAACTGCCTAACTACCCATTTACCCATTTACCCATC
TACCCAACCACTTACCCAACCACTTACCCAACCACTTACCCAACCACCTACCCAACCCCCCTTGC
CACCCCCATCGACCCATACAGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCACCCC
GGACACCACTCCCACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGACATCCGTCA
AGCAGGTACACCCAGCCACCCAGGCCCGCTCTCGCCACGACATCGCGGCCCACGCGTCCTCGCAC
CGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAACCAT
Found at i:35384 original size:8 final size:8
Alignment explanation
Indices: 35373--35402 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
35363 ACTGCCTAAC
35373 TACCCATT
1 TACCCATT
35381 TACCCATT
1 TACCCATT
*
35389 TACCCATC
1 TACCCATT
35397 TACCCA
1 TACCCA
35403 ACCACTTACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.27, C:0.43, G:0.00, T:0.30
Consensus pattern (8 bp):
TACCCATT
Left flanking sequence: Indices 34873 -- 35372
TGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGCGAGTGGTTCGAAGAGTGGA
TTTAGAGGGCTGGTGGCTGGTAGTTGGTGGTGGCGGGTGGGGTGGTGTGGTGGGGTGGTGGGGTG
GTGGTGTGATGGTTGAGGCTACGAGGCTATGGACCGAGGTATGAGGCTATGACTGAGGGTATGAG
GCAATGAGCTTTGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGT
GATTGTCGTTGCGTGGATTGTCGTAGTGGATTGTTGTTGCGTGGATTGTTGCGAGGCATTGCTGT
TGCGAGGCATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACTAGTCTTAGC
ACCATGGCTACGAACAAGCCTTCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACAC
TCAATTGCCCAACCACCCAATTGCCCAACCCCCTAACTGCCTAAC
Right flanking sequence: Indices 35403 -- 35902
ACCACTTACCCAACCACTTACCCAACCACTTACCCAACCACCTACCCAACCCCCCTTGCCACCCC
CATCGACCCATACAGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGACAC
CACTCCCACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGACATCCGTCAAGCAGG
TACACCCAGCCACCCAGGCCCGCTCTCGCCACGACATCGCGGCCCACGCGTCCTCGCACCGCCAA
ACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAACCATCTCGGGTGCATCAAGCGTCCTGCGCA
CCATATCCCGGTGGCCCTTCGCTCCCGGCCTGTACGGTGTCGGAAGGGGGGTCTAGATACAGGCG
ATGACGCACGATCTACAAATTTTTGCATTGTTAGGGGCGATGCCAATGGGCCCGATAGCCATCTA
ATACACACGTAGACCCACAAAAGAGCCCGCCGGCCAATTGCCCGT
Found at i:35414 original size:12 final size:12
Alignment explanation
Indices: 35397--35453 Score: 105
Period size: 12 Copynumber: 4.8 Consensus size: 12
35387 TTTACCCATC
35397 TACCCAACCACT
1 TACCCAACCACT
35409 TACCCAACCACT
1 TACCCAACCACT
35421 TACCCAACCACT
1 TACCCAACCACT
*
35433 TACCCAACCACC
1 TACCCAACCACT
35445 TACCCAACC
1 TACCCAACC
35454 CCCCTTGCCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.33, C:0.53, G:0.00, T:0.14
Consensus pattern (12 bp):
TACCCAACCACT
Left flanking sequence: Indices 34897 -- 35396
GACCCGGGGCTACCCGGCGGGCGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGCTGGTAGT
TGGTGGTGGCGGGTGGGGTGGTGTGGTGGGGTGGTGGGGTGGTGGTGTGATGGTTGAGGCTACGA
GGCTATGGACCGAGGTATGAGGCTATGACTGAGGGTATGAGGCAATGAGCTTTGCAACGGGTAAA
GTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTCGTTGCGTGGATTGTCGT
AGTGGATTGTTGTTGCGTGGATTGTTGCGAGGCATTGCTGTTGCGAGGCATTGCCGTTGTGACTC
GTAATTGCTTGCATGGGTTCTAAAAATACACTAGTCTTAGCACCATGGCTACGAACAAGCCTTCA
CACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACTCAATTGCCCAACCACCCAATTGC
CCAACCCCCTAACTGCCTAACTACCCATTTACCCATTTACCCATC
Right flanking sequence: Indices 35454 -- 35953
CCCCTTGCCACCCCCATCGACCCATACAGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGG
CTCACCCCGGACACCACTCCCACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGAC
ATCCGTCAAGCAGGTACACCCAGCCACCCAGGCCCGCTCTCGCCACGACATCGCGGCCCACGCGT
CCTCGCACCGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAACCATCTCGGGTGCATC
AAGCGTCCTGCGCACCATATCCCGGTGGCCCTTCGCTCCCGGCCTGTACGGTGTCGGAAGGGGGG
TCTAGATACAGGCGATGACGCACGATCTACAAATTTTTGCATTGTTAGGGGCGATGCCAATGGGC
CCGATAGCCATCTAATACACACGTAGACCCACAAAAGAGCCCGCCGGCCAATTGCCCGTAGCCCA
CCCGTAGCCCACCACACCGCGCTCCCAGTGCCACGCGTGGCCAGC
Found at i:35559 original size:15 final size:15
Alignment explanation
Indices: 35539--35567 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
35529 ACACCACTCC
35539 CACCCACTGACATCA
1 CACCCACTGACATCA
35554 CACCCACTGACATC
1 CACCCACTGACATC
35568 GCCCCATCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.48, G:0.07, T:0.14
Consensus pattern (15 bp):
CACCCACTGACATCA
Left flanking sequence: Indices 35039 -- 35538
AGGTATGAGGCTATGACTGAGGGTATGAGGCAATGAGCTTTGCAACGGGTAAAGTCGTTGCGTGG
ATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTCGTTGCGTGGATTGTCGTAGTGGATTGTTG
TTGCGTGGATTGTTGCGAGGCATTGCTGTTGCGAGGCATTGCCGTTGTGACTCGTAATTGCTTGC
ATGGGTTCTAAAAATACACTAGTCTTAGCACCATGGCTACGAACAAGCCTTCACACAACTAGCAA
ATCGCACTACTAATCCACCAATTGCACACTCAATTGCCCAACCACCCAATTGCCCAACCCCCTAA
CTGCCTAACTACCCATTTACCCATTTACCCATCTACCCAACCACTTACCCAACCACTTACCCAAC
CACTTACCCAACCACCTACCCAACCCCCCTTGCCACCCCCATCGACCCATACAGTCACCTCTACC
AGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGACACCACTCC
Right flanking sequence: Indices 35568 -- 36067
GCCCCATCCCCGCGACATCCGTCAAGCAGGTACACCCAGCCACCCAGGCCCGCTCTCGCCACGAC
ATCGCGGCCCACGCGTCCTCGCACCGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAA
CCATCTCGGGTGCATCAAGCGTCCTGCGCACCATATCCCGGTGGCCCTTCGCTCCCGGCCTGTAC
GGTGTCGGAAGGGGGGTCTAGATACAGGCGATGACGCACGATCTACAAATTTTTGCATTGTTAGG
GGCGATGCCAATGGGCCCGATAGCCATCTAATACACACGTAGACCCACAAAAGAGCCCGCCGGCC
AATTGCCCGTAGCCCACCCGTAGCCCACCACACCGCGCTCCCAGTGCCACGCGTGGCCAGCCCCT
CGCGCAGCCCGTCTCTACGCCTCCCACCCACACCGGGTGGCGGGTGCGTCCACCGCGTTCTAGGC
CATTCCTCGCTCCGACAACGCGGGAAAAACGAAGGGGGGTGCCCG
Found at i:36468 original size:12 final size:13
Alignment explanation
Indices: 36447--36509 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 13
36437 CGCTGGCACC
36447 CCCA-CCACCGAG
1 CCCACCCACCGAG
*
36459 TCC-CCCACCGAG
1 CCCACCCACCGAG
36471 CCCACCCACCACCGAG
1 CCCA--C-CCACCGAG
36487 CCCA-CCACCGAG
1 CCCACCCACCGAG
*
36499 -CCTCCCACCGA
1 CCCACCCACCGA
36510 CCTCGGGCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
11 2 0.05
12 27 0.64
15 1 0.02
16 12 0.29
ACGTcount: A:0.22, C:0.60, G:0.14, T:0.03
Consensus pattern (13 bp):
CCCACCCACCGAG
Left flanking sequence: Indices 35947 -- 36446
GGCCAGCCCCTCGCGCAGCCCGTCTCTACGCCTCCCACCCACACCGGGTGGCGGGTGCGTCCACC
GCGTTCTAGGCCATTCCTCGCTCCGACAACGCGGGAAAAACGAAGGGGGGTGCCCGAAAGCGGCA
ACTCTACAAACACCGCCCGCAATCGCCGCTGCCACCGCCAGGGAGCCCGTGCGACGCGGTGGAGG
CGAAGCCACGCGACAATAGGGGTCACCGTGCATAATTTTTTCTGGTAACACAGTAACACCTTATT
ACTATTCCCAATCGAGCCAGCAGCGTACGCACGAATTGGGCCGGGCACGCTCGATTTCAAATGCT
GTACTGTGTTCGCCGTAAGGGCACTATCTCGTCGCAATTGCCAGCCCGGTGTTGCAAACAAACCA
CCAGACCCACGGCGTTGATTTCCAGCTCCGCCCCCCCTCCCTCCCCTACCCGCCACCGCCGCCAC
CGAGCCCCCGGCGGCCTTTCGCTCCCCCTCATCTCCGCTGGCACC
Right flanking sequence: Indices 36510 -- 37009
CCTCGGGCTCCACAATGATTAAATCGTTTCGCCGCAGCAAACGCCACAGCGCCCTGCTGACCCTG
CCCCGCACCATCACCCGGGTGCTGCTGGCCGACGACACCGCCGACTTGGGCCTGCCGAAAAAGGT
GATCCGTGCCCTCTACAACTACTCGCCCCAGGGCCCGCGCGAGCTCAAGTTCGCCAAGGGCGACT
TCTTCCACGTGTTGCTGCCCGACGACCTGCAGGACGTGGCCAACGGGTGGTACGAGGCACTGAAC
CCGGCCACCCACGCCAAGGGGATGGTGCCCATCCTGTACTTCGAGGTGTTGGAGCGCACGCGGCC
CCACACCAACGGGCTGGTGCTGCTGGGCGTGCTGACGCTCCTGGCCGCGCTGAACCGCCTGCTGG
GCGCCCACACCTTGTACGCACAGGTGCTCTACGAGTTCAAGGCCGAGCGCGAGGACGAGCTCGAC
ATCTTCCCCGGCGAAAACTTGATTGTGTGCGCCCACCACGACTAC
Found at i:36485 original size:28 final size:28
Alignment explanation
Indices: 36447--36500 Score: 92
Period size: 28 Copynumber: 1.9 Consensus size: 28
36437 CGCTGGCACC
36447 CCCACCACCGAGTCCC-CCACCGAGCCCA
1 CCCACCACCGAG-CCCACCACCGAGCCCA
36475 CCCACCACCGAGCCCACCACCGAGCC
1 CCCACCACCGAGCCCACCACCGAGCC
36501 TCCCACCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.22, C:0.61, G:0.15, T:0.02
Consensus pattern (28 bp):
CCCACCACCGAGCCCACCACCGAGCCCA
Left flanking sequence: Indices 35947 -- 36446
GGCCAGCCCCTCGCGCAGCCCGTCTCTACGCCTCCCACCCACACCGGGTGGCGGGTGCGTCCACC
GCGTTCTAGGCCATTCCTCGCTCCGACAACGCGGGAAAAACGAAGGGGGGTGCCCGAAAGCGGCA
ACTCTACAAACACCGCCCGCAATCGCCGCTGCCACCGCCAGGGAGCCCGTGCGACGCGGTGGAGG
CGAAGCCACGCGACAATAGGGGTCACCGTGCATAATTTTTTCTGGTAACACAGTAACACCTTATT
ACTATTCCCAATCGAGCCAGCAGCGTACGCACGAATTGGGCCGGGCACGCTCGATTTCAAATGCT
GTACTGTGTTCGCCGTAAGGGCACTATCTCGTCGCAATTGCCAGCCCGGTGTTGCAAACAAACCA
CCAGACCCACGGCGTTGATTTCCAGCTCCGCCCCCCCTCCCTCCCCTACCCGCCACCGCCGCCAC
CGAGCCCCCGGCGGCCTTTCGCTCCCCCTCATCTCCGCTGGCACC
Right flanking sequence: Indices 36501 -- 37000
TCCCACCGACCTCGGGCTCCACAATGATTAAATCGTTTCGCCGCAGCAAACGCCACAGCGCCCTG
CTGACCCTGCCCCGCACCATCACCCGGGTGCTGCTGGCCGACGACACCGCCGACTTGGGCCTGCC
GAAAAAGGTGATCCGTGCCCTCTACAACTACTCGCCCCAGGGCCCGCGCGAGCTCAAGTTCGCCA
AGGGCGACTTCTTCCACGTGTTGCTGCCCGACGACCTGCAGGACGTGGCCAACGGGTGGTACGAG
GCACTGAACCCGGCCACCCACGCCAAGGGGATGGTGCCCATCCTGTACTTCGAGGTGTTGGAGCG
CACGCGGCCCCACACCAACGGGCTGGTGCTGCTGGGCGTGCTGACGCTCCTGGCCGCGCTGAACC
GCCTGCTGGGCGCCCACACCTTGTACGCACAGGTGCTCTACGAGTTCAAGGCCGAGCGCGAGGAC
GAGCTCGACATCTTCCCCGGCGAAAACTTGATTGTGTGCGCCCAC
Found at i:38195 original size:10 final size:10
Alignment explanation
Indices: 38148--38186 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
38138 AAACGCAGCA
*
38148 GACGGGTTCG
1 GACGGGCTCG
38158 GACGGGCTCG
1 GACGGGCTCG
38168 GACGGGCTCG
1 GACGGGCTCG
38178 GACGGGCTC
1 GACGGGCTC
38187 AGACTGGCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.10, C:0.28, G:0.49, T:0.13
Consensus pattern (10 bp):
GACGGGCTCG
Left flanking sequence: Indices 37648 -- 38147
GAACGGGTTCGACCGCGAGGAGGACGGCCCGGTGCGCCGGGCGCTGAAGCCCATCTCGCAAAAGA
GCAACTACCAGCAGGACCGGTTGTCGCAGTACATGAACACCCGCGCGCTGAACGTGCTGGAGCTG
CTGGGCCCGGACCCGCTGGCGCGCAAGGTCAAGGTCAAGTTCTACTTTGGCGACGACATCTTTGT
GTTGTTGTTGCCCACGGTGTTGCAGTTGCGCGACTTGAAGACAAAGTTGCACCAGCGGTTGCTGT
TGGCAGCCGACCAGCAGGTGCTGTTGTTTTTGAAAAACGACTACGACGAGTACATGGCCGAGCAC
GAGCTCGCGGCGCCGGACCCGGGCGCCATGCGCGAGTTCGAGGTCGACGACGACGCCAAGTTCCA
GCAAATCCTTTACGACAAGTGCAAGTTGGTGATTTTGCACTCCTAGACGACAAACACACACTGTA
TTATATAGCCTGTTGGTAATATTATGACTTTCGGTAAACGCAGCA
Right flanking sequence: Indices 38187 -- 38686
AGACTGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCATGGGGGCGGAGTG
GTTGGTTGGGTCTGTGGGTTGGAGTGGTAGTTGGAGTTATGGTGTGGTAGGGCTCCTGGAGGGAT
AGGCTTGGTTGGTGAGGTGGTGGGTGGTTTCTAGGGTTAAGGCGCATTAGGGTCGAGACTAGTGT
GACTGGTTGTGACTGGTTGTGTGTCTGGCTCATTTTGTGGGCGTTTGTATGGCGCTACGGGATGT
TTGGTTGAGTACAGGTTGGTGAATTATGGGTGTGGTAATTCGGGAGCTTGTTTTGAGCTACATGA
AGCATTCGCCTGTATAAACGTTGAATTTGTTCTTCGTCGGTACCATTTGATTACACTGGAGCATG
TTTCTGCCCTCAACCACAGCCAAAACCACGTCTCTCTTACTGCGCTGAAAATTTCCCGATTCATC
GGCCTGTTGACATGTTTGTGTTACCAAGTACGATGGCTGCAAAGA
Found at i:38195 original size:20 final size:20
Alignment explanation
Indices: 38146--38195 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
38136 GTAAACGCAG
*
38146 CAGACGGGTTCGGACGGGCT
1 CAGACGGGCTCGGACGGGCT
*
38166 CGGACGGGCTCGGACGGGCT
1 CAGACGGGCTCGGACGGGCT
*
38186 CAGACTGGCT
1 CAGACGGGCT
38196 GGGGGGCCGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.14, C:0.28, G:0.44, T:0.14
Consensus pattern (20 bp):
CAGACGGGCTCGGACGGGCT
Left flanking sequence: Indices 37646 -- 38145
CAGAACGGGTTCGACCGCGAGGAGGACGGCCCGGTGCGCCGGGCGCTGAAGCCCATCTCGCAAAA
GAGCAACTACCAGCAGGACCGGTTGTCGCAGTACATGAACACCCGCGCGCTGAACGTGCTGGAGC
TGCTGGGCCCGGACCCGCTGGCGCGCAAGGTCAAGGTCAAGTTCTACTTTGGCGACGACATCTTT
GTGTTGTTGTTGCCCACGGTGTTGCAGTTGCGCGACTTGAAGACAAAGTTGCACCAGCGGTTGCT
GTTGGCAGCCGACCAGCAGGTGCTGTTGTTTTTGAAAAACGACTACGACGAGTACATGGCCGAGC
ACGAGCTCGCGGCGCCGGACCCGGGCGCCATGCGCGAGTTCGAGGTCGACGACGACGCCAAGTTC
CAGCAAATCCTTTACGACAAGTGCAAGTTGGTGATTTTGCACTCCTAGACGACAAACACACACTG
TATTATATAGCCTGTTGGTAATATTATGACTTTCGGTAAACGCAG
Right flanking sequence: Indices 38196 -- 38695
GGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCATGGGGGCGGAGTGGTTGGTTGG
GTCTGTGGGTTGGAGTGGTAGTTGGAGTTATGGTGTGGTAGGGCTCCTGGAGGGATAGGCTTGGT
TGGTGAGGTGGTGGGTGGTTTCTAGGGTTAAGGCGCATTAGGGTCGAGACTAGTGTGACTGGTTG
TGACTGGTTGTGTGTCTGGCTCATTTTGTGGGCGTTTGTATGGCGCTACGGGATGTTTGGTTGAG
TACAGGTTGGTGAATTATGGGTGTGGTAATTCGGGAGCTTGTTTTGAGCTACATGAAGCATTCGC
CTGTATAAACGTTGAATTTGTTCTTCGTCGGTACCATTTGATTACACTGGAGCATGTTTCTGCCC
TCAACCACAGCCAAAACCACGTCTCTCTTACTGCGCTGAAAATTTCCCGATTCATCGGCCTGTTG
ACATGTTTGTGTTACCAAGTACGATGGCTGCAAAGAGACAATGGC
Found at i:39112 original size:13 final size:13
Alignment explanation
Indices: 39094--39144 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
39084 CTGAGCTCAG
39094 TTCTTCTCTCTTT
1 TTCTTCTCTCTTT
*
39107 TTCTTCTTTCTTTCT
1 TTCTTCTCTC-TT-T
*
39122 TTCTT-TCTCTGCT
1 TTCTTCTCTCT-TT
39135 TTCTTCTCTC
1 TTCTTCTCTC
39145 ACTGTTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 16 0.52
14 9 0.29
15 6 0.19
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (13 bp):
TTCTTCTCTCTTT
Left flanking sequence: Indices 38594 -- 39093
AGCCAAAACCACGTCTCTCTTACTGCGCTGAAAATTTCCCGATTCATCGGCCTGTTGACATGTTT
GTGTTACCAAGTACGATGGCTGCAAAGAGACAATGGCGTCTCAGATCCGAATGGAGATCGACTAC
ACGTTCGTAAAGTGGCCGTTAGGGTGCTGAATGAAGGGGAAATGCAACGTGTCAATGCGCTATTG
ACAGGTGGTTACAAGGTCGATGGTAGCTTGAGCGAAAAGATGATAAGCCTGTGGGGGTGTCGGGT
CAACGTGAATTTCTATGTTCAATGTTGGTACCATTCGGGGAGTCTACATACCAACCTACTGAGTC
AAACGACTTGGTTAGGGTAAAAACCGCAACCTGTACGACAGTTCGTCCACGACATACTCGCTTCG
ATTAATGCGACAACCACAGCTACAACTAAACAACCAGCTACACCACAGGCAACCAGGCAACTACA
GGCCACAGGCAACTACTACAACCACTTCTACAAACCTGAGCTCAG
Right flanking sequence: Indices 39145 -- 39644
ACTGTTTATTTCTACTCACTTGGTGGCGCCTTCCTTTACGTAGGCCGGGTCGGGCTCATTGAGAC
CCCCCGTTGCAGGCGAATCACCCAAGCTCTTCTGAGACACCACGGGGGTAGCCTGGAAGGCGGGC
GTGGCCAGGAGCTCCCCCTGTGCGCGGCCAGGAGTGGCGGCCTCCACCGTGGACTGGCCCTCGTT
GGGCGCTTGCACCCGACGGTTGGTCAGCCCGTAGACAGACGTGTTCAGCGAATGCGACAGCGTGT
CGCGCCGGGCAGGGTCCTGGATCGGTTTCTCCATCCCGTTCTCGTCCAACAGCTCGGGGTCGTGG
AACTCCTGGTTGTAGCGTTTCCGCTCCAGGCGCTTGCGGAGAAGGTGGATCCCAAGGAACACCAA
CAAGATGCCAAGGGGAATGAGAAGCAACAAGAACATGAGCCAGCGCCAGCGGAACCAGCCCAGCA
GGCGGGGGTGCACCACCACAAACATGGGGGAAGGAGTTGCGTCGG
Found at i:39126 original size:21 final size:21
Alignment explanation
Indices: 39097--39144 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
39087 AGCTCAGTTC
* *
39097 TTCTCTCTTTTTCTTCTTTCT
1 TTCTCTCTTTCTCTGCTTTCT
*
39118 TTCTTTCTTTCTCTGCTTTC-
1 TTCTCTCTTTCTCTGCTTTCT
39138 TTCTCTC
1 TTCTCTC
39145 ACTGTTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (21 bp):
TTCTCTCTTTCTCTGCTTTCT
Left flanking sequence: Indices 38597 -- 39096
CAAAACCACGTCTCTCTTACTGCGCTGAAAATTTCCCGATTCATCGGCCTGTTGACATGTTTGTG
TTACCAAGTACGATGGCTGCAAAGAGACAATGGCGTCTCAGATCCGAATGGAGATCGACTACACG
TTCGTAAAGTGGCCGTTAGGGTGCTGAATGAAGGGGAAATGCAACGTGTCAATGCGCTATTGACA
GGTGGTTACAAGGTCGATGGTAGCTTGAGCGAAAAGATGATAAGCCTGTGGGGGTGTCGGGTCAA
CGTGAATTTCTATGTTCAATGTTGGTACCATTCGGGGAGTCTACATACCAACCTACTGAGTCAAA
CGACTTGGTTAGGGTAAAAACCGCAACCTGTACGACAGTTCGTCCACGACATACTCGCTTCGATT
AATGCGACAACCACAGCTACAACTAAACAACCAGCTACACCACAGGCAACCAGGCAACTACAGGC
CACAGGCAACTACTACAACCACTTCTACAAACCTGAGCTCAGTTC
Right flanking sequence: Indices 39145 -- 39644
ACTGTTTATTTCTACTCACTTGGTGGCGCCTTCCTTTACGTAGGCCGGGTCGGGCTCATTGAGAC
CCCCCGTTGCAGGCGAATCACCCAAGCTCTTCTGAGACACCACGGGGGTAGCCTGGAAGGCGGGC
GTGGCCAGGAGCTCCCCCTGTGCGCGGCCAGGAGTGGCGGCCTCCACCGTGGACTGGCCCTCGTT
GGGCGCTTGCACCCGACGGTTGGTCAGCCCGTAGACAGACGTGTTCAGCGAATGCGACAGCGTGT
CGCGCCGGGCAGGGTCCTGGATCGGTTTCTCCATCCCGTTCTCGTCCAACAGCTCGGGGTCGTGG
AACTCCTGGTTGTAGCGTTTCCGCTCCAGGCGCTTGCGGAGAAGGTGGATCCCAAGGAACACCAA
CAAGATGCCAAGGGGAATGAGAAGCAACAAGAACATGAGCCAGCGCCAGCGGAACCAGCCCAGCA
GGCGGGGGTGCACCACCACAAACATGGGGGAAGGAGTTGCGTCGG
Found at i:42286 original size:25 final size:21
Alignment explanation
Indices: 42234--42305 Score: 99
Period size: 21 Copynumber: 3.2 Consensus size: 21
42224 GTCGCAGGCG
*
42234 GGCAGGGTCCGTGGTGTAAAC
1 GGCAGGGTCCGTGGTGTTAAC
42255 GGCAGGGTCCGTAGTGACTGTTAAC
1 GGCAGGGTCCGT-G-G--TGTTAAC
42280 GGCAGGGTCCGTGGTGTTAAC
1 GGCAGGGTCCGTGGTGTTAAC
42301 GGCAG
1 GGCAG
42306 CGGCCCCTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
21 24 0.52
22 1 0.02
23 2 0.04
24 1 0.02
25 18 0.39
ACGTcount: A:0.18, C:0.19, G:0.42, T:0.21
Consensus pattern (21 bp):
GGCAGGGTCCGTGGTGTTAAC
Left flanking sequence: Indices 41734 -- 42233
TTGATCATCTCGCCGTTCCAAATGTCCTTGCACGACTCGGAGAACGGCCGCAGCACGTACTCCAC
GTGGGCGTCAACCGGCTGGATGTGCTGCCACTCGTCGTACTTGGTCAACACCCGGTGGTTGAGAA
GCGAGTCCAGCGCCTGCAACAGCGTGCTGACAAACTGTTGGTTCTTGCGGATGTACACAGCGGTG
TAGTAGGTCAACAGCAGGGCTAAGAGCACCCCGCCAAGAAACCCGTGGATCCGTCCTCCCATGGT
ATGTGATAGTAAGGGGTAAAGGCTTTCGGTCGCGCTTTGGTTGGTCGCGAAAATTTGCAGCACGG
GTGGTTAGCTCAGAGATGTAGGAGAGAACTAGGGTATCGAAAACTAGGTTATGGGTTTGGTAGGG
GAATACTGGGGACAATGGGGCGACCACCGTGTGTTTTTCGGTTGGCATTCCGAGGGTCCCTGTTT
GTGTCAGTGAAAAATTGGATCTGTAGACGACCTGTGTCGCAGGCG
Right flanking sequence: Indices 42306 -- 42805
CGGCCCCTGATATTGAAATTGTCTGGGGAAGCTAAGCCTGGGGCTTGTTTTTCCGGGGCTGTGGT
GGCATGGTGGCTTGCGCACCAGCGATAGCCCCCAGGCGTACACTGACTCTCCTCTCTCGCTGCGC
TCGTCAATTCTCTTACACAAACACCACGCACCTGTGTTTTCCGTTAGTTTCGTAACTAGTTTAGT
GCTATTGTTTCAGAGTCTCGACCCGGACATTTTCCGAACAATAGCCGCTATCAATCAAGGACAAA
GTAAGCCCCGTCGCCCCCACGAACGGCCCACAGGTCGGAATGCACTGATAGCAGACCACCGGTAG
TGTTTATGCCCCCGGTTCTGCCGGCAGGCGGCACCCGGGGTTATTCACTTTCGGAGTTAGCACCG
CTATCGTCTCGTCCCAATCGGGCAATCGCGATGCCGCCAGAAAGCACCCGCTTAGCATGAAGCAG
CTACGACAGATTAACGTGGCTCAGCGCGCAGTTACGAAAGGAGCA
Found at i:54053 original size:15 final size:15
Alignment explanation
Indices: 54022--54078 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
54012 GATGGTGGAA
*
54022 GGTGGG-TGGCATGGG
1 GGTGGGATGGGAT-GG
*
54037 GGTGGAATGGGATGG
1 GGTGGGATGGGATGG
**
54052 GGTGGGATTAGATGG
1 GGTGGGATGGGATGG
54067 GGTGGGATGGGA
1 GGTGGGATGGGA
54079 GTGGAATGGG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 29 0.85
16 5 0.15
ACGTcount: A:0.16, C:0.02, G:0.61, T:0.21
Consensus pattern (15 bp):
GGTGGGATGGGATGG
Left flanking sequence: Indices 53522 -- 54021
AAACCACGCCCCGCTCCACGAGCGAGAGCTGTTCTCCCTCGGGATCGTCGATCATCGCAAGGAGA
AGCCGGATTTGCTGGCGGAGCCACGCACACTCGCTCTCCATCAGCTGCTTCTCCCGCACCACTCC
CAGGGCCACCCGGGCGATGGTGGAGGCTATCAGCTGGAGCACCTCGCGTTTGCGAGCCTCGGTTT
CTTCTTCGGAGTACCCAATCGCTGCGTACTGGGCGCTGAGGGTGGCCATGGTCGCATCGATCGCG
GTCGAGATGTCGGTGTAGGAGGTGGCCACCGGGGTTTCGGGGGTTTGGGGCGTTTCGGACACGGG
CGGTGGGTCCGGAGACGCCCTACGTTGCGCGACAGGCGTCACAACGCTCTCGCCAGTGCTGGTGT
CTTCCATACAGTCGGGTTGTTTACGTTTGTTGTTGTGATGCGAATGATCGGAGGGCTCGCAACGG
ACGTCAGGGGAAGTGCGGGTGGGGGGAACGTGGGGGATGGTGGAA
Right flanking sequence: Indices 54079 -- 54578
GTGGAATGGGAGTGATTAAAGGTAGATGGTTTTGTGTTGGTAGTGGATCGTTGGGTAGGATGGGT
TTGTCAGGCCAGAAGAGTTGTGGATCAGGTGCACGTGAAACCACACTAAATGAACTTTAAGTCCA
GGAGCATGTTCCAACCCATTCGAGGGGCCTCTCCAGCCCGCAACTGGGCTCTCCCTCGGTTTGCT
ACCCCGGAAGTGCCAGACAGACCCCTCGACCTCATTAGACTCGTCCCTGGTCTATATGCAGGCCG
TTGACCTCCCGGCAATAAGGTCCCAACGTAACCGCCTCGACGTCGCCCGGAAAAGCAAATAATAC
GGTGGCCGTGTTTTTCCGTATATAATAAAGGCTGTACGTGACTCACCAGGTCATGGCATCGGGTG
TTGGGTTTTTAGATTAGGCTTTGTGTAACATCGGTACTCAGAGATTGTAGAGCGTGTAAACGCCC
CGTATGACATATATTATGTTAAATCTGGTTCTGCAATTGACCAGT
Found at i:68298 original size:28 final size:28
Alignment explanation
Indices: 68266--68320 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
68256 GCTCGTGAAG
*
68266 AGAGCTTGTAGCGAGCTGATTTGCAAAT
1 AGAGCTTGTAGCGAGCTGATCTGCAAAT
*
68294 AGAGCTTGTCGCGAGCTGATCTGCAAA
1 AGAGCTTGTAGCGAGCTGATCTGCAAA
68321 GCTTGTACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (28 bp):
AGAGCTTGTAGCGAGCTGATCTGCAAAT
Left flanking sequence: Indices 67766 -- 68265
CCAACACCGGTTGAAGTCGCGCTGGATCACGCTCTGCCACTTTTTTTCCGCCTCTTTCTCGGTGG
GACCCAACTTGTACCCAACGTCCTCCTTCTTCTTGAGCTTCATCGGAGGGTCGACATAGTCAATG
GTGAGACCGTGTTTCGCAAGCATGGCCTCGAGTTTGCGGGACCGCAGAGCCAACCGCTTGCCATT
CTGGAGAAACCCTGGGAGAAACAACACCTTCATTGCTTGGACAATTGCATGTGGTTGTCGTTAGC
CCCACATTTCGGCAAGTACTGCAGGTAGGACGACAGAGCCCGCGGAGCTGGTAGCTAATGATAGA
GATGAGAGGTGGTGGTTGGACCCTGGAGTGGGCACAATGTGGCACGTTTGTTGTTACTACAATTA
GTAGCTTGTAATTGTGTGTGAACCAGCCGCGCTTATAGAAAGTGTTCTTCGATGGGATCACTGTG
CCTAGACGGTCGGATACCGGGGCCAACTCTTGCTGGCTCGTGAAG
Right flanking sequence: Indices 68321 -- 68423
GCTTGTACAGTCGTTACATAATTATTCGGAATAAGAAAATTCCGGAAGTCCAAAAATGCACTCAA
AAATAACTATTTGAAGGTCGAAGTATAAGTTACGTATG
Done.