sallet_3.scaffold.fasta.s29.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold49
Parameters: 2 7 7 80 10 50 500
Length:  100262

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2514--2602	21	4.2	21	94	0	133	11	31	30	26	1.91
2601--2711	30	3.7	30	80	2	116	17	44	24	14	1.86
2784--2863	21	3.8	21	83	0	97	11	43	27	17	1.83
14834--14886	16	3.4	16	82	12	65	22	7	43	26	1.80
26904--26949	22	2.1	22	83	0	56	26	17	26	30	1.97
28666--28718	19	2.9	19	83	10	67	28	54	0	16	1.43
28668--28718	16	2.9	18	82	11	61	27	54	0	17	1.43
28800--28855	20	3.0	19	80	12	71	30	57	7	5	1.48
28801--28835	10	3.5	10	92	0	61	28	62	5	2	1.32
29424--29464	21	2.0	21	90	0	64	12	48	17	21	1.79
31550--31617	15	4.5	15	78	7	66	55	1	42	0	1.08
31565--31654	9	10.0	9	77	4	74	52	8	37	1	1.40
31550--31633	18	4.8	18	85	4	102	54	3	41	0	1.17
31565--31656	27	3.4	27	80	12	82	52	8	38	1	1.40
31575--31672	36	2.7	36	82	0	97	48	14	34	2	1.55
31616--31660	12	3.5	12	77	16	54	46	17	33	2	1.61
33880--33913	6	5.7	6	89	0	50	52	32	14	0	1.42
33880--34012	27	4.9	27	80	9	110	49	44	4	1	1.31
33891--34012	42	2.9	40	79	15	113	49	45	3	1	1.28
33909--34017	14	7.8	14	84	7	141	48	47	1	1	1.23
33906--34012	6	18.0	6	76	18	91	49	47	0	1	1.18
43885--43990	31	3.5	30	75	12	101	41	21	17	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45934--45998	33	2.0	33	81	6	78	24	3	56	15	1.53
45949--45998	16	3.1	16	91	5	82	20	2	60	18	1.46
45953--45998	17	2.8	17	93	3	76	21	2	56	19	1.52
46377--46432	20	2.8	20	97	0	103	14	8	41	35	1.77
46449--46477	7	4.1	7	100	0	58	0	27	44	27	1.54
48524--48563	21	1.9	21	84	0	53	35	20	37	7	1.81
51836--51873	12	3.2	12	100	0	76	26	34	23	15	1.95
53400--53464	23	2.9	23	95	2	114	43	26	10	20	1.84
56562--56603	12	3.5	12	100	0	84	14	16	26	42	1.86
61718--61744	12	2.2	12	100	0	54	29	40	22	7	1.81
62422--62461	21	1.9	21	89	0	62	22	20	35	22	1.96
64062--64091	11	2.7	11	94	0	51	26	6	56	10	1.57
64795--64852	21	2.8	21	100	0	116	34	24	22	18	1.96
65635--65666	12	2.7	12	95	0	55	31	15	31	21	1.95
71306--71366	27	2.3	27	88	0	95	18	67	3	11	1.35
71309--71348	9	4.4	9	87	0	62	20	65	2	12	1.38
71306--71379	27	2.7	27	85	4	87	18	63	4	13	1.45
73759--73798	12	3.3	12	92	0	71	17	30	20	32	1.95
76484--76569	21	4.1	21	70	5	66	6	33	36	23	1.82
80346--80536	84	2.3	84	80	5	208	15	38	28	17	1.90
81515--81555	21	2.0	21	100	0	82	14	34	24	26	1.94
81518--81577	21	2.9	21	87	5	77	18	35	25	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82276--82304	12	2.4	12	100	0	58	24	44	31	0	1.54
82309--82336	12	2.3	12	100	0	56	17	50	25	7	1.72
84832--84871	13	3.0	13	88	3	53	30	40	20	10	1.85
85263--85351	36	2.5	36	84	0	106	33	8	40	16	1.80
87216--87253	12	3.2	12	85	3	51	5	2	68	23	1.23
87222--87252	16	1.9	16	93	0	53	3	3	67	25	1.20
88000--88062	18	3.4	18	80	10	74	15	33	17	33	1.92
88760--88827	23	3.0	23	80	4	75	19	11	42	26	1.85
89145--89174	12	2.5	12	94	0	51	36	26	36	0	1.57
89352--89376	11	2.3	11	100	0	50	24	16	40	20	1.91
90420--90460	18	2.3	18	95	0	73	36	26	31	4	1.78
91622--92856	144	8.6	144	82	2	1267	22	22	26	28	1.99
91622--93008	432	3.2	431	80	3	1460	22	22	27	27	1.99
91622--93002	144	9.6	144	81	2	1245	22	22	27	27	1.99
91583--93002	288	4.9	288	79	3	1370	22	22	27	27	1.99
92812--93108	144	2.1	143	81	4	355	23	21	28	26	1.99
96653--96708	12	4.7	12	75	16	53	3	41	26	28	1.72
98338--98390	12	4.7	12	86	13	85	28	32	16	22	1.96
98344--98384	21	2.0	21	100	0	82	26	29	14	29	1.95
98413--98451	15	2.6	15	100	0	78	33	28	20	17	1.96
98488--98587	39	2.6	39	82	3	112	12	65	3	20	1.39
99404--99433	12	2.5	12	88	0	51	30	10	46	13	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99547--99587	15	2.4	18	76	23	61	4	14	43	36	1.67
99553--99612	15	4.0	15	91	0	102	8	21	38	31	1.83
99555--99619	30	2.2	30	88	0	94	9	24	35	30	1.87

Tables:   1

The End!