Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold49
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 100262
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2538 original size:21 final size:21
Alignment explanation
Indices: 2514--2602 Score: 133
Period size: 21 Copynumber: 4.2 Consensus size: 21
2504 GCCACCGTTG
2514 CCACCGTAGTTGTCGTTGCGA
1 CCACCGTAGTTGTCGTTGCGA
2535 CCACCGTAGTTGTCGTTGCGA
1 CCACCGTAGTTGTCGTTGCGA
* *
2556 CCGCCGTAGTTGTCGTTGCGG
1 CCACCGTAGTTGTCGTTGCGA
* * *
2577 CCGCCGTAGTTGTCGTTACGG
1 CCACCGTAGTTGTCGTTGCGA
2598 CCACC
1 CCACC
2603 ACCAAAGCCA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 64 1.00
ACGTcount: A:0.11, C:0.31, G:0.30, T:0.27
Consensus pattern (21 bp):
CCACCGTAGTTGTCGTTGCGA
Left flanking sequence: Indices 2014 -- 2513
AGAGTTCCCCGGAGGGGCCGCCTCTAGCACAGCATTTGCGGTTAGAATCTTTTCTCAGCATTGCT
GGAAAATGGGCTTTGCTGGGTCAGGGAGACATGGCACGGTGAGACGAGACTGGCAAACGCGCTGA
TATAGGTGCTGTGTGCAGGTTGTGAAGCAGTAACCATAATCAATGCCACAGAGCTACCCCAAACG
GCAGGGTTAATCGGTCAGAATAAATAGGGCTACTGTTTACGGCACCCACTTCCTCCGTGTTCGCA
ATTGGTGCTCAATTGGCCCATCTCACAGAAACCCAACCCCGTTGACCTCCCACTTGAGACGCGTC
TACACGAGAAAACCCCTCATTAAATCCCTCACATCCACCACCCGTCGAACCTACTAACCCGATTC
ACTTACTGTCCATTGATACTTACCATCTGCCGCCGTCGTTTCTGCGGTCATCGCGACCGCCACCG
TAGCCAAAGTCCTCGCGGGTGTAGCCACCGTTGCCGCCACCGTTG
Right flanking sequence: Indices 2603 -- 3102
ACCAAAGCCACCCTGACCGCCGTGGTTGCCACCGAAACCACCCTGGCCACCGTGGTTGCCGCCGT
AGCCGCCTTGGCCGCCGTGGTTACCACCGTAACCACCCTGACCGTGGCCCTCGTTACCACCGCCG
AGAACGGAGCCGATCATCAGGCCCAAACCACCGCCCTGCGAGCCCTGGTTGTGGTTGCCGCCGTA
GCCGCCCTGGTTGCCACCGTAGCCGCCCTGGCCACCGCCATAGCCGCCCTGGTTGCCACCATAGC
CCTGGTTGTGGTCCTTGCCACCGCCGAGCACCGAGCTGAGCATACCGCCAAGGCCGCCCTCAGAC
TGCTGGTGGTTCTGGTTGTAGTTCTGTTGGTGGTTCTGGTTGCCGCCGCCCATCACGGACGAGAG
CATACCGCCAAGGCCGCCCTGCTGCTGCTGCTGCTGCTTGCCACCGTGCAACTGGTTCAGGATCA
TCGACCCCACAAGCCCGCCCGCAGACATCCCGTGGGACTTGCCCG
Found at i:2644 original size:30 final size:30
Alignment explanation
Indices: 2601--2711 Score: 116
Period size: 30 Copynumber: 3.7 Consensus size: 30
2591 GTTACGGCCA
2601 CCACC-AAAGCCACCCTGACCGCCGTGGTTG
1 CCACCGAAA-CCACCCTGACCGCCGTGGTTG
* *
2631 CCACCGAAACCACCCTGGCCACCGTGGTTG
1 CCACCGAAACCACCCTGACCGCCGTGGTTG
* * * * * * *
2661 CCGCCGTAGCCGCCTTGGCCGCCGTGGTTA
1 CCACCGAAACCACCCTGACCGCCGTGGTTG
*
2691 CCACCGTAACCACCCTGACCG
1 CCACCGAAACCACCCTGACCG
2712 TGGCCCTCGT
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
30 63 0.95
31 3 0.05
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.14
Consensus pattern (30 bp):
CCACCGAAACCACCCTGACCGCCGTGGTTG
Left flanking sequence: Indices 2101 -- 2600
AGGGAGACATGGCACGGTGAGACGAGACTGGCAAACGCGCTGATATAGGTGCTGTGTGCAGGTTG
TGAAGCAGTAACCATAATCAATGCCACAGAGCTACCCCAAACGGCAGGGTTAATCGGTCAGAATA
AATAGGGCTACTGTTTACGGCACCCACTTCCTCCGTGTTCGCAATTGGTGCTCAATTGGCCCATC
TCACAGAAACCCAACCCCGTTGACCTCCCACTTGAGACGCGTCTACACGAGAAAACCCCTCATTA
AATCCCTCACATCCACCACCCGTCGAACCTACTAACCCGATTCACTTACTGTCCATTGATACTTA
CCATCTGCCGCCGTCGTTTCTGCGGTCATCGCGACCGCCACCGTAGCCAAAGTCCTCGCGGGTGT
AGCCACCGTTGCCGCCACCGTTGCCACCGTAGTTGTCGTTGCGACCACCGTAGTTGTCGTTGCGA
CCGCCGTAGTTGTCGTTGCGGCCGCCGTAGTTGTCGTTACGGCCA
Right flanking sequence: Indices 2712 -- 3211
TGGCCCTCGTTACCACCGCCGAGAACGGAGCCGATCATCAGGCCCAAACCACCGCCCTGCGAGCC
CTGGTTGTGGTTGCCGCCGTAGCCGCCCTGGTTGCCACCGTAGCCGCCCTGGCCACCGCCATAGC
CGCCCTGGTTGCCACCATAGCCCTGGTTGTGGTCCTTGCCACCGCCGAGCACCGAGCTGAGCATA
CCGCCAAGGCCGCCCTCAGACTGCTGGTGGTTCTGGTTGTAGTTCTGTTGGTGGTTCTGGTTGCC
GCCGCCCATCACGGACGAGAGCATACCGCCAAGGCCGCCCTGCTGCTGCTGCTGCTGCTTGCCAC
CGTGCAACTGGTTCAGGATCATCGACCCCACAAGCCCGCCCGCAGACATCCCGTGGGACTTGCCC
GTGGCACCGCCAATGACGTCACCGATGAAGCCACGCTCACCCTCCTGGGCGTCGGGACCACCCTG
GCCCTGTTGGTTGGATTGCTGAGGCTTGTACTCGCCCTGTTCGCC
Found at i:2808 original size:21 final size:21
Alignment explanation
Indices: 2784--2863 Score: 97
Period size: 21 Copynumber: 3.8 Consensus size: 21
2774 GCCCTGGTTG
* *
2784 TGGTTGCCGCCGTAGCCGCCC
1 TGGTTGCCACCATAGCCGCCC
*
2805 TGGTTGCCACCGTAGCCGCCC
1 TGGTTGCCACCATAGCCGCCC
*** *
2826 TGGCCACCGCCATAGCCGCCC
1 TGGTTGCCACCATAGCCGCCC
2847 TGGTTGCCACCATAGCC
1 TGGTTGCCACCATAGCC
2864 CTGGTTGTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.11, C:0.44, G:0.28, T:0.17
Consensus pattern (21 bp):
TGGTTGCCACCATAGCCGCCC
Left flanking sequence: Indices 2284 -- 2783
AATTGGCCCATCTCACAGAAACCCAACCCCGTTGACCTCCCACTTGAGACGCGTCTACACGAGAA
AACCCCTCATTAAATCCCTCACATCCACCACCCGTCGAACCTACTAACCCGATTCACTTACTGTC
CATTGATACTTACCATCTGCCGCCGTCGTTTCTGCGGTCATCGCGACCGCCACCGTAGCCAAAGT
CCTCGCGGGTGTAGCCACCGTTGCCGCCACCGTTGCCACCGTAGTTGTCGTTGCGACCACCGTAG
TTGTCGTTGCGACCGCCGTAGTTGTCGTTGCGGCCGCCGTAGTTGTCGTTACGGCCACCACCAAA
GCCACCCTGACCGCCGTGGTTGCCACCGAAACCACCCTGGCCACCGTGGTTGCCGCCGTAGCCGC
CTTGGCCGCCGTGGTTACCACCGTAACCACCCTGACCGTGGCCCTCGTTACCACCGCCGAGAACG
GAGCCGATCATCAGGCCCAAACCACCGCCCTGCGAGCCCTGGTTG
Right flanking sequence: Indices 2864 -- 3363
CTGGTTGTGGTCCTTGCCACCGCCGAGCACCGAGCTGAGCATACCGCCAAGGCCGCCCTCAGACT
GCTGGTGGTTCTGGTTGTAGTTCTGTTGGTGGTTCTGGTTGCCGCCGCCCATCACGGACGAGAGC
ATACCGCCAAGGCCGCCCTGCTGCTGCTGCTGCTGCTTGCCACCGTGCAACTGGTTCAGGATCAT
CGACCCCACAAGCCCGCCCGCAGACATCCCGTGGGACTTGCCCGTGGCACCGCCAATGACGTCAC
CGATGAAGCCACGCTCACCCTCCTGGGCGTCGGGACCACCCTGGCCCTGTTGGTTGGATTGCTGA
GGCTTGTACTCGCCCTGTTCGCCCTGAGAGTAGAATTCGTTGGCAGACATGTTGTTGAATTCGCT
AGCGTTATCGGTGGAATATATGCGGCGGTACCTGAAATTTGTGCAGACACGACCTTCGATACAGG
GGCATGGAAGGCAAGTACGAGGCCGACAGGAGAGGCGGTAGTCTA
Found at i:14866 original size:15 final size:16
Alignment explanation
Indices: 14834--14886 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
14824 ATAGAGGGGC
*
14834 GGTGGCTAAAGAGGCT
1 GGTGGTTAAAGAGGCT
14850 GGTGGTTAAAG-GGCT
1 GGTGGTTAAAGAGGCT
*
14865 GGT-GTATAAAGAGTCT
1 GGTGGT-TAAAGAGGCT
14881 GGTGGT
1 GGTGGT
14887 AGGTCGGTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 2 0.06
15 12 0.38
16 16 0.50
17 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.43, T:0.26
Consensus pattern (16 bp):
GGTGGTTAAAGAGGCT
Left flanking sequence: Indices 14334 -- 14833
CTCTCGTTCAACTTGTCGTACCTCAAGCTTCTGGCGACCCTCCAGTACCTTCTTCGAGGGTTGCC
GTTTTTGGCCACTAACATCGACCTGACGTTCCCCGCCCACGGCAAATTGTTGATGGGGGCGGGGC
TGATCATCGAGCTGGTGGCGTATGCGGCGGGCCGCCAGCCCGACGCCATTTGCGGGAAGCCCAAC
CAGGCGATGTTGGACGCCATCAAAGCGGAAAACCCCCCGTTGAAGGCTGCCCCGAAGCGCGGGCT
CATGGTCGGGGACCGGTTGAACACCGACATGAAATTCGGTCGCGATGGCGGGCTCGACACGTTGT
TGGTGTTGACGGGGATCGAGACTGAGGACACTGTGCACGGGTTGGCGCCGGCGGAGCAGCCGACG
TACTACGCGTCGAAGCTTGGCGACTTGTTTGAGTTGACGCACTAGACGACTGGTTCGAACATAGA
TGATAGACTAATACAGCTAGAGTAATGGTAGTGTGATAGAGGGGC
Right flanking sequence: Indices 14887 -- 15386
AGGTCGGTGACCAGAAGGTGACTCCAGTTGTAGTTTAACTAGTGGTCTGTGAGATTATTAATTTG
GGATGATTGCAATGATCCTTTCCTGAGCAGTTTTCCAGGTCACCTATCGCTCGGGATTGGCTGTA
TTGTCGCCACCCCTTTACTAGCTGGTCACACACACCGCTCCCGTCCTCCCACACATTGTCCACCC
ACCTACCCCACACGCATTGTTTAGCGAGCCCAGCATGGTCTCAGTGACCCACAGCAGGCTGCATT
GACGAGACTACCGAAACAATGCGTCTGTTTCGGCAACCGGCATCCCGCGGGTGTCCGGCAGCGTC
ACGGGCCGTGACCTCAGCCAACAGTGCCTGTTTCAAGTTCGTCTGAACGGGCTCGCGACCGGCGT
TTGTGGCTGCAACTCCGACCTAAATATAGATCGTGGGCGTCGGCACCAGTTGCCGTGGACGCGGT
TCCAGATGTCGCTGACAGCCTTGTAGGTGGGCCCATCGCGTGTGT
Found at i:26944 original size:22 final size:22
Alignment explanation
Indices: 26904--26949 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
26894 GTACACTTCC
*
26904 AGTGCACATTGAGTACACTTTG
1 AGTGCACATTGAGTACACTATG
* * *
26926 AGTGCACGTTTAGTGCACTATG
1 AGTGCACATTGAGTACACTATG
26948 AG
1 AG
26950 CACACTTCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (22 bp):
AGTGCACATTGAGTACACTATG
Left flanking sequence: Indices 26404 -- 26903
TGTTAAGCACCGACTGAAAAAGACGCTCAGTCAACCTACCAGTGCAATGAGTTCCCCTAACCCCT
GGGCCAAGAGAGACGCGTGGCGCTACGAATCGTTCCCTCGTGCTGCCCGTTTCCGCAACGCGTTC
CCGGGCTTCGGCATCGCCGTGGTGGCGTTCACCTTGTTCTGTGGCTACGAGAAGTTCGTGTTGCA
GAAGGACGCCCACCACGAGGAGCACCACTGAGCATCCGACCGACGGTCCGGTCAGCTGGGGCGTC
CACTGTACATTACTAGTCATCAATAAACAAACGAAAATGAGAGGTGTAGGAGTATTGGGACTGCC
TGGAAGAGCAGTTAGACTGAACCTGGGACGAGAACCAGATGGGGTTACTGTGGACAACCAGTGCA
CATCCATTGCAAATTGGGCATCAAGTACACTTCAAGTGCACTCCAGCACTATGGATGTACATCCC
CAGTGCAATTTGGATGCAAAAACGATACACGTTGGGTACACTTCC
Right flanking sequence: Indices 26950 -- 27449
CACACTTCCACTGCACATCGAGTACACATACGTTGCACATTCACTACACTTGTAGACACGTTGGG
TTCACAGTCAGTACACATTCTGACACTCAATACACCTTGACTACACAATCGGTATTTCACACCCA
GTGTAGATTCAACCACCCAGTATACGTCCAGTAAACAGTACTCATTACCTTTTGGTACACTCAGT
AACCAGAACACCTAGCACCGTTCAATACGCTCAGCATCCTAGTACCACTTTCCCCCTACCACCCC
CGCTACACCCACTACCCTTCGTAGATTCTATTATGCTATGTACAGTTACTCCGGCTTCTCCATCT
CGCCCAGCTGCCACGCAGGGGTCTCGTCCGCAGTGTCCACCTTCTCCGTCTCCTGGCTCTTGTTG
GCGTTCATCACCTTGGTCTTGTCGGACGCCACCTGTGCCCACAAGTCGATGTACGCCTGCTCCTC
GTGCAAACCCCACTGGGTGTTCAGGATGGGGTACACCGCGCCGTA
Found at i:28690 original size:19 final size:19
Alignment explanation
Indices: 28666--28718 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
28656 AACCTCCGCG
28666 ACCCACCTATACACCCACT
1 ACCCACCTATACACCCACT
*
28685 ACCCACCTTTACACCCA-T
1 ACCCACCTATACACCCACT
*
28703 --CCACCTCTACACCCAC
1 ACCCACCTATACACCCAC
28719 ACCTACCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 14 0.45
18 1 0.03
19 16 0.52
ACGTcount: A:0.28, C:0.55, G:0.00, T:0.17
Consensus pattern (19 bp):
ACCCACCTATACACCCACT
Left flanking sequence: Indices 28166 -- 28665
TTTGGTTTACGTGGTTTTGTATGGTGGGTCTGTTTTTAGGTGTCTAGTGAAAAGTTACTTGTAGA
GTAATAGACTGGTTGGAGTCAGAGATACGTGAGAGAAAACGGGGGAGATGTAAACACACACCTGT
ACAAGCAATCCAAGCCACCGGTATTTCTCTTGGTGACTCTGTTTGTGCTAGTTGATGGTCCCCTT
GGGCTCTGATCAGTTTGTCCTACATGCAGTCCACCAACATCGATCAGACTAGTCTAGTAGCAAGA
ACAAACCAAATGCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTGAAAACCCCTTGAAA
AAGCACACACTACCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCC
ACTCCTGTAACTACCACTCAGACGAGTCTAGTACCATACGAACTCGACACCACGCCACACCACTC
CAATGGCATTGAAACCACTCACCTGACCCAACCATAACCTCCGCG
Right flanking sequence: Indices 28719 -- 29218
ACCTACCTTCCAGCTCTACCTTCGCGCGCTTCCCTACACCTCCGCAACCACCACCAAACCCAACA
AACCGCCACTAAAACCACCACCACGACCCACCACTACCCACCACGACCCACCGTAACCCACGACC
CACCACTCTCCCACGCCCACGCTCCCACAATTCCGCGCAACCCGCCCGTCCACCCGTCCCCCCCA
CCCTCCTGCACACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCACCAAACCAGAAGAC
ATGGCACTTGTGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACCGCACGCTCAAGGA
GCACGCGCTCCGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATCGCCAACCTGCTCC
CGGAGCTCGAACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCGGCTCTCGTGATC
TCGAAGTGCTACTACAACCTCGGCGACTACGCGGCGCTGGTCAAG
Found at i:28708 original size:16 final size:18
Alignment explanation
Indices: 28668--28718 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
28658 CCTCCGCGAC
28668 CCACCTATACACCCACTA
1 CCACCTATACACCCACTA
*
28686 CCCACCTTTACACCCA-T-
1 -CCACCTATACACCCACTA
*
28703 CCACCTCTACACCCAC
1 CCACCTATACACCCAC
28719 ACCTACCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 14 0.48
18 1 0.03
19 14 0.48
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (18 bp):
CCACCTATACACCCACTA
Left flanking sequence: Indices 28168 -- 28667
TGGTTTACGTGGTTTTGTATGGTGGGTCTGTTTTTAGGTGTCTAGTGAAAAGTTACTTGTAGAGT
AATAGACTGGTTGGAGTCAGAGATACGTGAGAGAAAACGGGGGAGATGTAAACACACACCTGTAC
AAGCAATCCAAGCCACCGGTATTTCTCTTGGTGACTCTGTTTGTGCTAGTTGATGGTCCCCTTGG
GCTCTGATCAGTTTGTCCTACATGCAGTCCACCAACATCGATCAGACTAGTCTAGTAGCAAGAAC
AAACCAAATGCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTGAAAACCCCTTGAAAAA
GCACACACTACCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCCAC
TCCTGTAACTACCACTCAGACGAGTCTAGTACCATACGAACTCGACACCACGCCACACCACTCCA
ATGGCATTGAAACCACTCACCTGACCCAACCATAACCTCCGCGAC
Right flanking sequence: Indices 28719 -- 29218
ACCTACCTTCCAGCTCTACCTTCGCGCGCTTCCCTACACCTCCGCAACCACCACCAAACCCAACA
AACCGCCACTAAAACCACCACCACGACCCACCACTACCCACCACGACCCACCGTAACCCACGACC
CACCACTCTCCCACGCCCACGCTCCCACAATTCCGCGCAACCCGCCCGTCCACCCGTCCCCCCCA
CCCTCCTGCACACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCACCAAACCAGAAGAC
ATGGCACTTGTGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACCGCACGCTCAAGGA
GCACGCGCTCCGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATCGCCAACCTGCTCC
CGGAGCTCGAACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCGGCTCTCGTGATC
TCGAAGTGCTACTACAACCTCGGCGACTACGCGGCGCTGGTCAAG
Found at i:28826 original size:20 final size:19
Alignment explanation
Indices: 28800--28855 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
28790 CACTAAAACC
28800 ACCACCACGACCCACCACT
1 ACCACCACGACCCACCACT
*
28819 ACCCACCACGACCCACC-GT
1 A-CCACCACGACCCACCACT
*
28838 AAC-CCACGACCCACCACT
1 ACCACCACGACCCACCACT
28856 CTCCCACGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 12 0.38
18 2 0.06
19 3 0.09
20 15 0.47
ACGTcount: A:0.30, C:0.57, G:0.07, T:0.05
Consensus pattern (19 bp):
ACCACCACGACCCACCACT
Left flanking sequence: Indices 28300 -- 28799
GCAATCCAAGCCACCGGTATTTCTCTTGGTGACTCTGTTTGTGCTAGTTGATGGTCCCCTTGGGC
TCTGATCAGTTTGTCCTACATGCAGTCCACCAACATCGATCAGACTAGTCTAGTAGCAAGAACAA
ACCAAATGCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTGAAAACCCCTTGAAAAAGC
ACACACTACCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCCACTC
CTGTAACTACCACTCAGACGAGTCTAGTACCATACGAACTCGACACCACGCCACACCACTCCAAT
GGCATTGAAACCACTCACCTGACCCAACCATAACCTCCGCGACCCACCTATACACCCACTACCCA
CCTTTACACCCATCCACCTCTACACCCACACCTACCTTCCAGCTCTACCTTCGCGCGCTTCCCTA
CACCTCCGCAACCACCACCAAACCCAACAAACCGCCACTAAAACC
Right flanking sequence: Indices 28856 -- 29355
CTCCCACGCCCACGCTCCCACAATTCCGCGCAACCCGCCCGTCCACCCGTCCCCCCCACCCTCCT
GCACACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCACCAAACCAGAAGACATGGCAC
TTGTGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACCGCACGCTCAAGGAGCACGCG
CTCCGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATCGCCAACCTGCTCCCGGAGCT
CGAACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCGGCTCTCGTGATCTCGAAGT
GCTACTACAACCTCGGCGACTACGCGGCGCTGGTCAAGTACGCGCTCTGCGCCGGCGACGCCTTC
GACGTCAACGAGCGCTCGCAGTACGTCGAGCACACGGTGCTGGAGTGTATCCGGATGTACAACCG
CCACCGGGCCGCGGTGTACGAGAGCGAGAACACCGAAAACAACAC
Found at i:28854 original size:10 final size:10
Alignment explanation
Indices: 28801--28835 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
28791 ACTAAAACCA
28801 CCACCACGAC
1 CCACCACGAC
*
28811 CCACCACTAC
1 CCACCACGAC
28821 CCACCACGAC
1 CCACCACGAC
28831 CCACC
1 CCACC
28836 GTAACCCACG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.29, C:0.63, G:0.06, T:0.03
Consensus pattern (10 bp):
CCACCACGAC
Left flanking sequence: Indices 28301 -- 28800
CAATCCAAGCCACCGGTATTTCTCTTGGTGACTCTGTTTGTGCTAGTTGATGGTCCCCTTGGGCT
CTGATCAGTTTGTCCTACATGCAGTCCACCAACATCGATCAGACTAGTCTAGTAGCAAGAACAAA
CCAAATGCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTGAAAACCCCTTGAAAAAGCA
CACACTACCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCCACTCC
TGTAACTACCACTCAGACGAGTCTAGTACCATACGAACTCGACACCACGCCACACCACTCCAATG
GCATTGAAACCACTCACCTGACCCAACCATAACCTCCGCGACCCACCTATACACCCACTACCCAC
CTTTACACCCATCCACCTCTACACCCACACCTACCTTCCAGCTCTACCTTCGCGCGCTTCCCTAC
ACCTCCGCAACCACCACCAAACCCAACAAACCGCCACTAAAACCA
Right flanking sequence: Indices 28836 -- 29335
GTAACCCACGACCCACCACTCTCCCACGCCCACGCTCCCACAATTCCGCGCAACCCGCCCGTCCA
CCCGTCCCCCCCACCCTCCTGCACACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCAC
CAAACCAGAAGACATGGCACTTGTGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACC
GCACGCTCAAGGAGCACGCGCTCCGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATC
GCCAACCTGCTCCCGGAGCTCGAACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGC
GGCTCTCGTGATCTCGAAGTGCTACTACAACCTCGGCGACTACGCGGCGCTGGTCAAGTACGCGC
TCTGCGCCGGCGACGCCTTCGACGTCAACGAGCGCTCGCAGTACGTCGAGCACACGGTGCTGGAG
TGTATCCGGATGTACAACCGCCACCGGGCCGCGGTGTACGAGAGC
Found at i:29450 original size:21 final size:21
Alignment explanation
Indices: 29424--29464 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
29414 AACGCTACCA
* *
29424 ATGCCTCCTCCGATGCCTCCG
1 ATGCCTCCTCCAAGGCCTCCG
29445 ATGCCTCCTCCAAGGCCTCC
1 ATGCCTCCTCCAAGGCCTCC
29465 TCCACCATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.49, G:0.17, T:0.22
Consensus pattern (21 bp):
ATGCCTCCTCCAAGGCCTCCG
Left flanking sequence: Indices 28924 -- 29423
CACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCACCAAACCAGAAGACATGGCACTTG
TGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACCGCACGCTCAAGGAGCACGCGCTC
CGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATCGCCAACCTGCTCCCGGAGCTCGA
ACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCGGCTCTCGTGATCTCGAAGTGCT
ACTACAACCTCGGCGACTACGCGGCGCTGGTCAAGTACGCGCTCTGCGCCGGCGACGCCTTCGAC
GTCAACGAGCGCTCGCAGTACGTCGAGCACACGGTGCTGGAGTGTATCCGGATGTACAACCGCCA
CCGGGCCGCGGTGTACGAGAGCGAGAACACCGAAAACAACACCGAGAACAATTTCGAAAACACTG
GCGACGAGAAGTTTGCCTCCAACGCTTCCACCACCAACGCTACCA
Right flanking sequence: Indices 29465 -- 29964
TCCACCATTGGCCCGCGGTTGACGGCCATTTTCGAGCAGATGGTGCGCAAAACCGCCCTGGACCC
GCGGTTGGCCCTTGGCCTTGGCCTCGAGCTGTTCCGCTTGGACCTCATCCAGCGGGTGGTGGCGG
CGCATCCCACCGAGGTGGGCTACGTGCTCCACGCGGCCAACGCGGTGGTGCAGCACCGCGGGTTC
CGCCGCGCGGTGTTGACGCAGTTGGTGGCCACGGTGATGGCTGGCCCCCTCGACGGCGACGGCGT
GTACGTGGCCCTCCGCATCGCGGTGCAGTTGAACGACCCGGCCACCGCGGTGGAGCTCTTTGGCC
GTCTTGGTGCGCTGGAGACCGCCTACCAGGGCGCGTTCGACCTCGTGCAGCTGGCCCCGCAGCGG
TTCTTGGACACGGTGCGCCACCAGGTCACCGACGCCAAGACCCAGCAGATCCTCCTGGGAGTGCC
GCTGTGCGACTTGGACTTGACGTTCCTCTACAAAAACAACGCCAC
Found at i:31570 original size:15 final size:15
Alignment explanation
Indices: 31550--31617 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
31540 GGCCGCGGTC
31550 AAGAAGGAGGAAGAG
1 AAGAAGGAGGAAGAG
31565 AAGAAGGAGG-AGAAG
1 AAGAAGGAGGAAG-AG
* *
31580 GAGAAGAAGGAAGAG
1 AAGAAGGAGGAAGAG
* * * *
31595 AAGGAGAAGAAAGAC
1 AAGAAGGAGGAAGAG
31610 AAGAAGGA
1 AAGAAGGA
31618 CAAGAAGGAC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
14 2 0.05
15 39 0.91
16 2 0.05
ACGTcount: A:0.56, C:0.01, G:0.43, T:0.00
Consensus pattern (15 bp):
AAGAAGGAGGAAGAG
Left flanking sequence: Indices 31050 -- 31549
TCGTGCAGCAGACCGAGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACC
GTGGGCAACAAGCACGAGGACGCGCTCGCCAAGTTTGGTGCCACGTTGGCCCAGGGGATCATCGA
TGCCGGCGGGCGCAACGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCG
CGCTCGTCGGGTTGGCGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTG
CTTGCGTTCACGCCCACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGC
GGCCGCGTGCCACGCGCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGG
AGAAGAAGGAGAAGGTGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAG
CGCCACGGGCTGAAGGTGGACGAGGGCGAGGCGGCGGCCGCGGTC
Right flanking sequence: Indices 31618 -- 32117
CAAGAAGGACGAGAAGTCCAAGGACGACAAGAAGGACGACAAGGCCGACAAGTCCGACAAGGAGC
AGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGGTGCCCAACATGCTGCGGGTGGTGCCG
TTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAACCGGTTCACGCCGGTGCGCAAGTTGCG
TGCCACCGGTGGTGTGGTGGTGTTGCACGATGCCGAGCCCGACGCGCCCAAGGAGTGTATCAAGA
CGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGGAGCCGTTTACGTTGGAGGACGACGAC
GACGACGAATAGATATGAAGTAATAAATGATAGAGAAAGAGGAGTAGGGGGAGCGGTACGGTGGT
GAATAGGGTAAGGTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGCAGTTAAGGTAGTGGTTT
GTGTGGTGAACAGCGCCAGCCTCGGTACGACCAGGGGTATAGCCT
Found at i:31580 original size:9 final size:9
Alignment explanation
Indices: 31565--31654 Score: 74
Period size: 9 Copynumber: 10.0 Consensus size: 9
31555 GGAGGAAGAG
*
31565 AAGAAGGAG
1 AAGAAGGAC
* *
31574 GAGAAGGAG
1 AAGAAGGAC
31583 AAGAAGGA-
1 AAGAAGGAC
*
31591 AGAGAAGGAG
1 A-AGAAGGAC
*
31601 AAGAAAGAC
1 AAGAAGGAC
31610 AAGAAGGAC
1 AAGAAGGAC
31619 AAGAAGGAC
1 AAGAAGGAC
* **
31628 GAGAAGTCC
1 AAGAAGGAC
* *
31637 AAGGACGAC
1 AAGAAGGAC
31646 AAGAAGGAC
1 AAGAAGGAC
31655 GACAAGGCCG
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
8 1 0.02
9 62 0.97
10 1 0.02
ACGTcount: A:0.52, C:0.09, G:0.38, T:0.01
Consensus pattern (9 bp):
AAGAAGGAC
Left flanking sequence: Indices 31065 -- 31564
AGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACCGTGGGCAACAAGCAC
GAGGACGCGCTCGCCAAGTTTGGTGCCACGTTGGCCCAGGGGATCATCGATGCCGGCGGGCGCAA
CGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGCGCTCGTCGGGTTGG
CGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGCTTGCGTTCACGCCC
ACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCGGCCGCGTGCCACGC
GCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGAGAAGAAGGAGAAGG
TGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGCGCCACGGGCTGAAG
GTGGACGAGGGCGAGGCGGCGGCCGCGGTCAAGAAGGAGGAAGAG
Right flanking sequence: Indices 31655 -- 32154
GACAAGGCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGC
GGTGCCCAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGA
ACCGGTTCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGATGCCGAG
CCCGACGCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCC
GGAGCCGTTTACGTTGGAGGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAA
AGAGGAGTAGGGGGAGCGGTACGGTGGTGAATAGGGTAAGGTAGATATGGTATGGGTGGTGGTAC
GGTAAGGGAGCAGTTAAGGTAGTGGTTTGTGTGGTGAACAGCGCCAGCCTCGGTACGACCAGGGG
TATAGCCTGGTTTTTGAGCACACCAGAGGCAACGAAAGGCGGCCG
Found at i:31583 original size:18 final size:18
Alignment explanation
Indices: 31550--31633 Score: 102
Period size: 18 Copynumber: 4.8 Consensus size: 18
31540 GGCCGCGGTC
31550 AAGAAGGA-G-GAA-GAG
1 AAGAAGGACGAGAAGGAG
*
31565 AAGAAGGAGGAGAAGGAG
1 AAGAAGGACGAGAAGGAG
*
31583 AAGAAGGAAGAGAAGGAG
1 AAGAAGGACGAGAAGGAG
* * *
31601 AAGAAAGACAAGAAGGAC
1 AAGAAGGACGAGAAGGAG
31619 AAGAAGGACGAGAAG
1 AAGAAGGACGAGAAG
31634 TCCAAGGACG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
15 8 0.14
16 1 0.02
17 3 0.05
18 47 0.80
ACGTcount: A:0.55, C:0.04, G:0.42, T:0.00
Consensus pattern (18 bp):
AAGAAGGACGAGAAGGAG
Left flanking sequence: Indices 31050 -- 31549
TCGTGCAGCAGACCGAGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACC
GTGGGCAACAAGCACGAGGACGCGCTCGCCAAGTTTGGTGCCACGTTGGCCCAGGGGATCATCGA
TGCCGGCGGGCGCAACGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCG
CGCTCGTCGGGTTGGCGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTG
CTTGCGTTCACGCCCACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGC
GGCCGCGTGCCACGCGCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGG
AGAAGAAGGAGAAGGTGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAG
CGCCACGGGCTGAAGGTGGACGAGGGCGAGGCGGCGGCCGCGGTC
Right flanking sequence: Indices 31634 -- 32133
TCCAAGGACGACAAGAAGGACGACAAGGCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAA
GCACACCAAGGACGCGTACGCGGTGCCCAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACG
TGACGGCGGCCGCGGGCCAGAACCGGTTCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTG
GTGGTGTTGCACGATGCCGAGCCCGACGCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTA
CGTGACGGAGGCGCCGGTTCCGGAGCCGTTTACGTTGGAGGACGACGACGACGACGAATAGATAT
GAAGTAATAAATGATAGAGAAAGAGGAGTAGGGGGAGCGGTACGGTGGTGAATAGGGTAAGGTAG
ATATGGTATGGGTGGTGGTACGGTAAGGGAGCAGTTAAGGTAGTGGTTTGTGTGGTGAACAGCGC
CAGCCTCGGTACGACCAGGGGTATAGCCTGGTTTTTGAGCACACC
Found at i:31632 original size:27 final size:27
Alignment explanation
Indices: 31565--31656 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
31555 GGAGGAAGAG
* * *
31565 AAGAAGGAGGAGAAGGAGAAGAAGGA-
1 AAGAAGGACGAGAAAGACAAGAAGGAC
31591 AGAGAAGGA-GAAGAAAGACAAGAAGGAC
1 A-AGAAGGACG-AGAAAGACAAGAAGGAC
* * *
31619 AAGAAGGACGAG-AAGTCCAAGGACGAC
1 AAGAAGGACGAGAAAG-ACAAGAAGGAC
31646 AAGAAGGACGA
1 AAGAAGGACGA
31657 CAAGGCCGAC
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
26 5 0.09
27 49 0.88
28 2 0.04
ACGTcount: A:0.52, C:0.09, G:0.38, T:0.01
Consensus pattern (27 bp):
AAGAAGGACGAGAAAGACAAGAAGGAC
Left flanking sequence: Indices 31065 -- 31564
AGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACCGTGGGCAACAAGCAC
GAGGACGCGCTCGCCAAGTTTGGTGCCACGTTGGCCCAGGGGATCATCGATGCCGGCGGGCGCAA
CGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGCGCTCGTCGGGTTGG
CGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGCTTGCGTTCACGCCC
ACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCGGCCGCGTGCCACGC
GCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGAGAAGAAGGAGAAGG
TGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGCGCCACGGGCTGAAG
GTGGACGAGGGCGAGGCGGCGGCCGCGGTCAAGAAGGAGGAAGAG
Right flanking sequence: Indices 31657 -- 32156
CAAGGCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGG
TGCCCAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAAC
CGGTTCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGATGCCGAGCC
CGACGCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGG
AGCCGTTTACGTTGGAGGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAAAG
AGGAGTAGGGGGAGCGGTACGGTGGTGAATAGGGTAAGGTAGATATGGTATGGGTGGTGGTACGG
TAAGGGAGCAGTTAAGGTAGTGGTTTGTGTGGTGAACAGCGCCAGCCTCGGTACGACCAGGGGTA
TAGCCTGGTTTTTGAGCACACCAGAGGCAACGAAAGGCGGCCGTT
Found at i:31647 original size:36 final size:36
Alignment explanation
Indices: 31575--31672 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 36
31565 AAGAAGGAGG
* * ***
31575 AGAAGGAGAAGAAGGAAGAGAAGGAGAAGAAAGACA
1 AGAAGGACAAGAAGGACGAGAAGTCCAAGAAAGACA
* *
31611 AGAAGGACAAGAAGGACGAGAAGTCCAAGGACGACA
1 AGAAGGACAAGAAGGACGAGAAGTCCAAGAAAGACA
* * * *
31647 AGAAGGACGACAAGGCCGACAAGTCC
1 AGAAGGACAAGAAGGACGAGAAGTCC
31673 GACAAGGAGC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.49, C:0.14, G:0.35, T:0.02
Consensus pattern (36 bp):
AGAAGGACAAGAAGGACGAGAAGTCCAAGAAAGACA
Left flanking sequence: Indices 31075 -- 31574
CCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACCGTGGGCAACAAGCACGAGGACGCGC
TCGCCAAGTTTGGTGCCACGTTGGCCCAGGGGATCATCGATGCCGGCGGGCGCAACGCCACCATC
CAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGCGCTCGTCGGGTTGGCGTTGTTCTG
CCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGCTTGCGTTCACGCCCACGCTGGTGA
TTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCGGCCGCGTGCCACGCGCGCGAGGGG
GTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGAGAAGAAGGAGAAGGTGGCCACCGC
GGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGCGCCACGGGCTGAAGGTGGACGAGG
GCGAGGCGGCGGCCGCGGTCAAGAAGGAGGAAGAGAAGAAGGAGG
Right flanking sequence: Indices 31673 -- 32172
GACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGGTGCCCAACATGCTGCG
GGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAACCGGTTCACGCCGGTGC
GCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGATGCCGAGCCCGACGCGCCCAAGGAG
TGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGGAGCCGTTTACGTTGGA
GGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAAAGAGGAGTAGGGGGAGCG
GTACGGTGGTGAATAGGGTAAGGTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGCAGTTAAG
GTAGTGGTTTGTGTGGTGAACAGCGCCAGCCTCGGTACGACCAGGGGTATAGCCTGGTTTTTGAG
CACACCAGAGGCAACGAAAGGCGGCCGTTTGGTAGTATTACCAGT
Found at i:31654 original size:12 final size:12
Alignment explanation
Indices: 31616--31660 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
31606 AGACAAGAAG
31616 GACAAGAAGGAC
1 GACAAGAAGGAC
*
31628 GAGAAGTCCAAGGAC
1 GACAAG---AAGGAC
31643 GACAAGAAGGAC
1 GACAAGAAGGAC
31655 GACAAG
1 GACAAG
31661 GCCGACAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 17 0.61
15 11 0.39
ACGTcount: A:0.47, C:0.18, G:0.33, T:0.02
Consensus pattern (12 bp):
GACAAGAAGGAC
Left flanking sequence: Indices 31116 -- 31615
TGGGCAACAAGCACGAGGACGCGCTCGCCAAGTTTGGTGCCACGTTGGCCCAGGGGATCATCGAT
GCCGGCGGGCGCAACGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGC
GCTCGTCGGGTTGGCGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGC
TTGCGTTCACGCCCACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCG
GCCGCGTGCCACGCGCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGA
GAAGAAGGAGAAGGTGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGC
GCCACGGGCTGAAGGTGGACGAGGGCGAGGCGGCGGCCGCGGTCAAGAAGGAGGAAGAGAAGAAG
GAGGAGAAGGAGAAGAAGGAAGAGAAGGAGAAGAAAGACAAGAAG
Right flanking sequence: Indices 31661 -- 32160
GCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGGTGCC
CAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAACCGGT
TCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGATGCCGAGCCCGAC
GCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGGAGCC
GTTTACGTTGGAGGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAAAGAGGA
GTAGGGGGAGCGGTACGGTGGTGAATAGGGTAAGGTAGATATGGTATGGGTGGTGGTACGGTAAG
GGAGCAGTTAAGGTAGTGGTTTGTGTGGTGAACAGCGCCAGCCTCGGTACGACCAGGGGTATAGC
CTGGTTTTTGAGCACACCAGAGGCAACGAAAGGCGGCCGTTTGGT
Found at i:33891 original size:6 final size:6
Alignment explanation
Indices: 33880--33913 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
33870 CAACCCTTAA
* *
33880 AACAGC AACAGC AACAGC AACAGC GACAAC AACA
1 AACAGC AACAGC AACAGC AACAGC AACAGC AACA
33914 ACACCAACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.53, C:0.32, G:0.15, T:0.00
Consensus pattern (6 bp):
AACAGC
Left flanking sequence: Indices 33380 -- 33879
ATACTGCTGAAACCGGCCCCCTCTAACAAATTTTAGCGGCGTCTGCATGTAAAAACGGCCCCCTC
TAACAAACAACCACCCCCACTATACGAGCTATACGACGACGGTTCACTAATATTAGTAGAAGACT
TTACGAGCATTACATAACCGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAATGAACACAT
GTGATACTGATCACGTGACTTTACTATTGATACCGTAGATAGCGTTGATTATGGCGAACCTGTAT
ATATCTTATATACTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTAC
TCCGAAGGCGCACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACA
ACCAACAGGGGGAACAAACGGCGCCAATGGCACCCGATCCAACGAATCGAACCGGATACCATTGG
CACCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTTAA
Right flanking sequence: Indices 33914 -- 34413
ACACCAACACCAACACCACCAACACCAACACCAACACCAACACACCAACACCAACACACCGATAA
CAACACACCAACACCAACACTCCAACACCAACACGCCAATAAGAGGGGGTGGTACTGCTAGTACT
TCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCCAGAGGCTTGCAGCTCCCCGCGCCGAC
CACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCC
CGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCAGGACTGTTCGAGGACCCGTAGCTGGT
AGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGACCAACAGACGCTGAGCCACTACCATGG
CGCGATGCGCCAACGGACAATGACCCAGCCGGGAGACTCCATCAGAAGTACCAACAGCACCAAGG
CTGTGGTGAGCAAGTATCACCACGATAACGACAAGCTTTGATTTG
Found at i:33910 original size:27 final size:27
Alignment explanation
Indices: 33880--34012 Score: 110
Period size: 27 Copynumber: 4.9 Consensus size: 27
33870 CAACCCTTAA
* * * *
33880 AACAGCAACAGCAACAGCAACAGCGA-C
1 AACAACAACACCAACACCAACA-CCACC
33907 AACAACAACACCAACACCAACACCACC
1 AACAACAACACCAACACCAACACCACC
*
33934 AACACCAACACCAACACCAACA-CACC
1 AACAACAACACCAACACCAACACCACC
* * * *
33960 AACACCAACACACCGATAACAACA-CACC
1 AACAAC-A-ACACCAACACCAACACCACC
*
33988 AACACCAACACTCCAACACCAACAC
1 AACAACAACA--CCAACACCAACAC
34013 GCCAATAAGA
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
26 15 0.17
27 43 0.48
28 31 0.35
ACGTcount: A:0.50, C:0.44, G:0.05, T:0.02
Consensus pattern (27 bp):
AACAACAACACCAACACCAACACCACC
Left flanking sequence: Indices 33380 -- 33879
ATACTGCTGAAACCGGCCCCCTCTAACAAATTTTAGCGGCGTCTGCATGTAAAAACGGCCCCCTC
TAACAAACAACCACCCCCACTATACGAGCTATACGACGACGGTTCACTAATATTAGTAGAAGACT
TTACGAGCATTACATAACCGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAATGAACACAT
GTGATACTGATCACGTGACTTTACTATTGATACCGTAGATAGCGTTGATTATGGCGAACCTGTAT
ATATCTTATATACTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTAC
TCCGAAGGCGCACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACA
ACCAACAGGGGGAACAAACGGCGCCAATGGCACCCGATCCAACGAATCGAACCGGATACCATTGG
CACCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTTAA
Right flanking sequence: Indices 34013 -- 34512
GCCAATAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCACTACCATGGCGCGATGCGCCAACGGACAATGACCCAGCCGGGA
GACTCCATCAGAAGTACCAACAGCACCAAGGCTGTGGTGAGCAAGTATCACCACGATAACGACAA
GCTTTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCTATCTTCTTTGATTTTCTTTTTGCTTGTC
GCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGC
Found at i:33943 original size:42 final size:40
Alignment explanation
Indices: 33891--34012 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 40
33881 ACAGCAACAG
*
33891 CAACAGCAACAGCGACAACAACAACACCAACACCAACACCAC
1 CAACAACAACA-C-ACAACAACAACACCAACACCAACACCAC
* *
33933 CAACACCAACAC-CAACACCAACACACCAACACCAACA-CAC
1 CAACAACAACACACAACAAC-A-ACACCAACACCAACACCAC
* * *
33973 CGATAACAACACACCAACACCAACACTCCAACACCAACAC
1 CAACAACAACACA-CAACAACAACA--CCAACACCAACAC
34013 GCCAATAAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
39 6 0.09
40 16 0.24
41 17 0.25
42 29 0.43
ACGTcount: A:0.49, C:0.46, G:0.03, T:0.02
Consensus pattern (40 bp):
CAACAACAACACACAACAACAACACCAACACCAACACCAC
Left flanking sequence: Indices 33391 -- 33890
ACCGGCCCCCTCTAACAAATTTTAGCGGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAAC
CACCCCCACTATACGAGCTATACGACGACGGTTCACTAATATTAGTAGAAGACTTTACGAGCATT
ACATAACCGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAATGAACACATGTGATACTGAT
CACGTGACTTTACTATTGATACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCTTATAT
ACTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGC
ACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGG
GAACAAACGGCGCCAATGGCACCCGATCCAACGAATCGAACCGGATACCATTGGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAAACAGCAACAG
Right flanking sequence: Indices 34013 -- 34512
GCCAATAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCACTACCATGGCGCGATGCGCCAACGGACAATGACCCAGCCGGGA
GACTCCATCAGAAGTACCAACAGCACCAAGGCTGTGGTGAGCAAGTATCACCACGATAACGACAA
GCTTTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCTATCTTCTTTGATTTTCTTTTTGCTTGTC
GCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGC
Found at i:33960 original size:14 final size:14
Alignment explanation
Indices: 33909--34017 Score: 141
Period size: 14 Copynumber: 7.8 Consensus size: 14
33899 ACAGCGACAA
33909 CAACAACACCAACAC
1 CAAC-ACACCAACAC
33924 CAACACCACCAACAC
1 CAACA-CACCAACAC
33939 C-A-ACACCAACAC
1 CAACACACCAACAC
33951 CAACACACCAACAC
1 CAACACACCAACAC
* * *
33965 CAACACACCGATAA
1 CAACACACCAACAC
33979 CAACACACCAACAC
1 CAACACACCAACAC
*
33993 CAACACTCCAACAC
1 CAACACACCAACAC
*
34007 CAACACGCCAA
1 CAACACACCAA
34018 TAAGAGGGGG
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
12 10 0.12
13 2 0.02
14 57 0.69
15 14 0.17
ACGTcount: A:0.49, C:0.48, G:0.02, T:0.02
Consensus pattern (14 bp):
CAACACACCAACAC
Left flanking sequence: Indices 33409 -- 33908
ATTTTAGCGGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGAGC
TATACGACGACGGTTCACTAATATTAGTAGAAGACTTTACGAGCATTACATAACCGCTTTACGAG
CTGACCTAATATACTGGTGCGGCTCAATGAACACATGTGATACTGATCACGTGACTTTACTATTG
ATACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCTTATATACTACAATATAAGCCCCC
AGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACTAAA
CAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAACAAACGGCGCCAATG
GCACCCGATCCAACGAATCGAACCGGATACCATTGGCACCACCAACAGGGGGAAAAGGAGCCATT
GGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAGCGACAA
Right flanking sequence: Indices 34018 -- 34517
TAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACTACCATGGCGCGATGCGCCAACGGACAATGACCCAGCCGGGAGACTC
CATCAGAAGTACCAACAGCACCAAGGCTGTGGTGAGCAAGTATCACCACGATAACGACAAGCTTT
GATTTGCCTCCTTGAGGGGATTTTTTTCCCCTATCTTCTTTGATTTTCTTTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:33970 original size:6 final size:6
Alignment explanation
Indices: 33906--34012 Score: 91
Period size: 6 Copynumber: 18.0 Consensus size: 6
33896 GCAACAGCGA
*
33906 CAACAA CAACAC CAACAC CAACA- C--CAC CAACAC CAACAC CAACAC
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC
* * *
33951 CAACACAC CAACAC CAACA- CACCGA- TAACAA C-ACAC CAACAC CAACACTC
1 C-A-ACAC CAACAC CAACAC CAAC-AC CAACAC CAACAC CAACAC CAACA--C
34001 CAACAC CAACAC
1 CAACAC CAACAC
34013 GCCAATAAGA
Statistics
Matches: 85, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 9 0.11
6 60 0.71
7 2 0.02
8 11 0.13
ACGTcount: A:0.50, C:0.48, G:0.01, T:0.02
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 33406 -- 33905
CAAATTTTAGCGGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACG
AGCTATACGACGACGGTTCACTAATATTAGTAGAAGACTTTACGAGCATTACATAACCGCTTTAC
GAGCTGACCTAATATACTGGTGCGGCTCAATGAACACATGTGATACTGATCACGTGACTTTACTA
TTGATACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCTTATATACTACAATATAAGCC
CCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACT
AAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAACAAACGGCGCCA
ATGGCACCCGATCCAACGAATCGAACCGGATACCATTGGCACCACCAACAGGGGGAAAAGGAGCC
ATTGGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAGCGA
Right flanking sequence: Indices 34013 -- 34512
GCCAATAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCACTACCATGGCGCGATGCGCCAACGGACAATGACCCAGCCGGGA
GACTCCATCAGAAGTACCAACAGCACCAAGGCTGTGGTGAGCAAGTATCACCACGATAACGACAA
GCTTTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCTATCTTCTTTGATTTTCTTTTTGCTTGTC
GCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGC
Found at i:43920 original size:31 final size:30
Alignment explanation
Indices: 43885--43990 Score: 101
Period size: 31 Copynumber: 3.5 Consensus size: 30
43875 AAATAAAAAG
*
43885 TAGTTTACAAGGCGAATGATACCAAAAACCC
1 TAGTTTACAAGGCGAATGA-AACAAAAACCC
* *
43916 TAGTTTGCGAA-GCGAATCGAAACAAAACCCC
1 TAGTTTAC-AAGGCGAAT-GAAACAAAAACCC
* *
43947 TTGTTCACAAGGCGAATGAAAACAAAAA--C
1 TAGTTTACAAGGCGAATG-AAACAAAAACCC
*
43976 TACTTTACAAGGCGA
1 TAGTTTACAAGGCGA
43991 TTCAAAACAA
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
29 13 0.21
30 3 0.05
31 41 0.67
32 4 0.07
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.19
Consensus pattern (30 bp):
TAGTTTACAAGGCGAATGAAACAAAAACCC
Left flanking sequence: Indices 43385 -- 43884
TGGCTGAGGTCCGGCTCACCTGGGATGGACCTGCGCTCCTTGAGTGTCTCGTGTTGAACCAGTGC
GACCAGCAACAGGTCTTCAATGAATGGTCGTTTGCCTCCATTGGTGCCGACTGCCTCCCCAACTT
GAGACTCGTGCACCTGTTCCTACCGCCCAAGGAGGGACCAGTCACCAGGGACATGGTGTGTCGTT
TGCGCGAGCTGTCGCCGTACAACAACCAGTGGATGACCACCGCGGCGAGTCCCTGCGGCGAGTGG
CCCGAGCCCGTGCTCGAAGAGGTGTTCCGGAAGTGTCCCGCCAAGTTCGAAGTGATCGGGTACGA
CGCGGACTTGGGCGAGTTCAAGCGCAGCGTGATGTACCGCCGCCCTAGAGAGAAAGCGTAGCTAC
GTCTTATGATTAATGAATGCATTTAACACGAAACAGCGGCGTCTCCAAACTTTTTGGGATGCTAC
CTTGGTTCCCAAAAGGGTAATTTGCAACCGTAGAAAAATAAAAAG
Right flanking sequence: Indices 43991 -- 44490
TTCAAAACAAATTCCTAGATTTTATGGCCAACCGAGACAAACAATCTGGTTCTACATGGCCAACC
AAATCAAATCCAATCGTTTGCCGTTGGTACCCCTACAAAACCTCTCTACCTTCTTCTGTCTATTC
AACATGCATTACAACCGCGGCTTCGACGCGTCGGGCCCGCCGGCCGTGGCGTTGGCGTTGATCTC
CAACGCCCCGCCCTCGTTCTCCTTGTCGTCGCCAAAGAACACCACCGTCACCGTCAAGTCGTCGC
GGTACCGCCGCAGCACCGGCAGCGGGATCGAAATGAGCATCAGCGTCTGCTCGCGCGACCCGCCG
TTGGACAACGCGTTGCGGATGAGGTGGGTCAGCACGTTGGCGTCGTCGAGCATGTAGTTCAGCGC
CCGCGAGTTGCGGCGGAACGGCTTTTTGCTCAGCTTGTCCGCCAGCACGTCCGCCACCTCGGGGA
GCTTCGCCTCGTTCAGCCCCCACGGCCACAACAGCTTCTGCGGCT
Found at i:45971 original size:33 final size:33
Alignment explanation
Indices: 45934--45998 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
45924 GGTAAGTAAC
*
45934 GAGAGAACGGTGAAG-GGGGAGAGGGTGTTGAGG
1 GAGAG-ACGGTGAAGAGGGCAGAGGGTGTTGAGG
* **
45967 GAGAGAGGGTGTTGAGGGCAGAGGGTGTTGAG
1 GAGAGACGGTGAAGAGGGCAGAGGGTGTTGAG
45999 AGAAGTGGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 6 0.22
33 21 0.78
ACGTcount: A:0.25, C:0.03, G:0.57, T:0.15
Consensus pattern (33 bp):
GAGAGACGGTGAAGAGGGCAGAGGGTGTTGAGG
Left flanking sequence: Indices 45434 -- 45933
TTTGGCCAGCACCTGGTCTTCGTTGAGAAGGAACACGCCCTGCTTCTGCTGCTGGGCCAGAATCA
GCTGCAGAGCCAGCAACAGCGACGTCAGTGTCGAGAACATCTTTTCCTGGGCGTCGGGCGACAGC
TCTAGCGAGTAGTAGCTGCGCTGGTTGAACTGGATGTAGCCACCGACGAGGACGAGGCCCAGGAA
CACTGCTACCCGCCGACGGTTACGTCTGGAGACCGGCTTGGTTGTGAGGGCCCGCACCAGCCGCC
GGGTGAGGGCGGTGGATGGGGGTGCTTTGAGCATCCGCGGGGCCACGCGGAGAATGAACATAGGG
GGTGTGTGCGGGTGTGTGTTGGGTACCGGGACACGTGTGGGATAAGCGCTGGCGCGAGGTTGTGT
CTATAAAGCCCTGGGTTGGCCAATGGGTGCTGGGGTAAAGGGTTTGTGGTTGATGTGCGATTGCC
GTGGGTGCGGCGCGGGCTCGCAACGCGTCACGAGGGGTAAGTAAC
Right flanking sequence: Indices 45999 -- 46498
AGAAGTGGCTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCTTTCAGGGTTTCCTATG
CCCTATGCCTATGACTGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACCGTCGC
AAAGGCCCAGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTGTTGCA
ACGGCTAGACCCTGTGACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTCGCGGT
GTGGATCGTACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGGCTTAA
GAGGCAAGAGAAGCGGTTGCTGTTATGCTTGGTTGTGCTGGTGCGGTGCCGTGAATGTGTGTGGT
GTGTGCACAATGTGTGTGGTGTGTGCACAATGTGTGCGGTGTGTATGGTGTGTTCGGTGTGTGCT
CGGTGCTCGGTGCTCGGTGCTCGGAGTGCGCTCAAGGTGCACTTG
Found at i:45972 original size:17 final size:16
Alignment explanation
Indices: 45949--45998 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
45939 AACGGTGAAG
45949 GGGGAGAGGGTGTTGA
1 GGGGAGAGGGTGTTGA
45965 GGGAGAGAGGGTGTTGA
1 GGG-GAGAGGGTGTTGA
*
45982 GGGCAGAGGGTGTTGA
1 GGGGAGAGGGTGTTGA
45998 G
1 G
45999 AGAAGTGGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 16 0.50
17 16 0.50
ACGTcount: A:0.20, C:0.02, G:0.60, T:0.18
Consensus pattern (16 bp):
GGGGAGAGGGTGTTGA
Left flanking sequence: Indices 45449 -- 45948
GTCTTCGTTGAGAAGGAACACGCCCTGCTTCTGCTGCTGGGCCAGAATCAGCTGCAGAGCCAGCA
ACAGCGACGTCAGTGTCGAGAACATCTTTTCCTGGGCGTCGGGCGACAGCTCTAGCGAGTAGTAG
CTGCGCTGGTTGAACTGGATGTAGCCACCGACGAGGACGAGGCCCAGGAACACTGCTACCCGCCG
ACGGTTACGTCTGGAGACCGGCTTGGTTGTGAGGGCCCGCACCAGCCGCCGGGTGAGGGCGGTGG
ATGGGGGTGCTTTGAGCATCCGCGGGGCCACGCGGAGAATGAACATAGGGGGTGTGTGCGGGTGT
GTGTTGGGTACCGGGACACGTGTGGGATAAGCGCTGGCGCGAGGTTGTGTCTATAAAGCCCTGGG
TTGGCCAATGGGTGCTGGGGTAAAGGGTTTGTGGTTGATGTGCGATTGCCGTGGGTGCGGCGCGG
GCTCGCAACGCGTCACGAGGGGTAAGTAACGAGAGAACGGTGAAG
Right flanking sequence: Indices 45999 -- 46498
AGAAGTGGCTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCTTTCAGGGTTTCCTATG
CCCTATGCCTATGACTGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACCGTCGC
AAAGGCCCAGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTGTTGCA
ACGGCTAGACCCTGTGACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTCGCGGT
GTGGATCGTACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGGCTTAA
GAGGCAAGAGAAGCGGTTGCTGTTATGCTTGGTTGTGCTGGTGCGGTGCCGTGAATGTGTGTGGT
GTGTGCACAATGTGTGTGGTGTGTGCACAATGTGTGCGGTGTGTATGGTGTGTTCGGTGTGTGCT
CGGTGCTCGGTGCTCGGTGCTCGGAGTGCGCTCAAGGTGCACTTG
Found at i:45991 original size:16 final size:17
Alignment explanation
Indices: 45953--45998 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
45943 GTGAAGGGGG
*
45953 AGAGGGTGTTGAGGGAG
1 AGAGGGTGTTGAGGGAC
45970 AGAGGGTGTTGAGGG-C
1 AGAGGGTGTTGAGGGAC
45986 AGAGGGTGTTGAG
1 AGAGGGTGTTGAG
45999 AGAAGTGGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 13 0.46
17 15 0.54
ACGTcount: A:0.22, C:0.02, G:0.57, T:0.20
Consensus pattern (17 bp):
AGAGGGTGTTGAGGGAC
Left flanking sequence: Indices 45453 -- 45952
TCGTTGAGAAGGAACACGCCCTGCTTCTGCTGCTGGGCCAGAATCAGCTGCAGAGCCAGCAACAG
CGACGTCAGTGTCGAGAACATCTTTTCCTGGGCGTCGGGCGACAGCTCTAGCGAGTAGTAGCTGC
GCTGGTTGAACTGGATGTAGCCACCGACGAGGACGAGGCCCAGGAACACTGCTACCCGCCGACGG
TTACGTCTGGAGACCGGCTTGGTTGTGAGGGCCCGCACCAGCCGCCGGGTGAGGGCGGTGGATGG
GGGTGCTTTGAGCATCCGCGGGGCCACGCGGAGAATGAACATAGGGGGTGTGTGCGGGTGTGTGT
TGGGTACCGGGACACGTGTGGGATAAGCGCTGGCGCGAGGTTGTGTCTATAAAGCCCTGGGTTGG
CCAATGGGTGCTGGGGTAAAGGGTTTGTGGTTGATGTGCGATTGCCGTGGGTGCGGCGCGGGCTC
GCAACGCGTCACGAGGGGTAAGTAACGAGAGAACGGTGAAGGGGG
Right flanking sequence: Indices 45999 -- 46498
AGAAGTGGCTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCTTTCAGGGTTTCCTATG
CCCTATGCCTATGACTGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACCGTCGC
AAAGGCCCAGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTGTTGCA
ACGGCTAGACCCTGTGACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTCGCGGT
GTGGATCGTACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGGCTTAA
GAGGCAAGAGAAGCGGTTGCTGTTATGCTTGGTTGTGCTGGTGCGGTGCCGTGAATGTGTGTGGT
GTGTGCACAATGTGTGTGGTGTGTGCACAATGTGTGCGGTGTGTATGGTGTGTTCGGTGTGTGCT
CGGTGCTCGGTGCTCGGTGCTCGGAGTGCGCTCAAGGTGCACTTG
Found at i:46402 original size:20 final size:20
Alignment explanation
Indices: 46377--46432 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
46367 CGGTGCCGTG
46377 AATGTGTGTGGTGTGTGCAC
1 AATGTGTGTGGTGTGTGCAC
46397 AATGTGTGTGGTGTGTGCAC
1 AATGTGTGTGGTGTGTGCAC
*
46417 AATGTGTGCGGTGTGT
1 AATGTGTGTGGTGTGT
46433 ATGGTGTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.14, C:0.09, G:0.41, T:0.36
Consensus pattern (20 bp):
AATGTGTGTGGTGTGTGCAC
Left flanking sequence: Indices 45877 -- 46376
TGTGCGATTGCCGTGGGTGCGGCGCGGGCTCGCAACGCGTCACGAGGGGTAAGTAACGAGAGAAC
GGTGAAGGGGGAGAGGGTGTTGAGGGAGAGAGGGTGTTGAGGGCAGAGGGTGTTGAGAGAAGTGG
CTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCTTTCAGGGTTTCCTATGCCCTATGC
CTATGACTGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACCGTCGCAAAGGCCC
AGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTGTTGCAACGGCTAG
ACCCTGTGACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTCGCGGTGTGGATCG
TACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGGCTTAAGAGGCAAG
AGAAGCGGTTGCTGTTATGCTTGGTTGTGCTGGTGCGGTGCCGTG
Right flanking sequence: Indices 46433 -- 46932
ATGGTGTGTTCGGTGTGTGCTCGGTGCTCGGTGCTCGGTGCTCGGAGTGCGCTCAAGGTGCACTT
GATGTGCATTAGGGGTGTCGAGGTGGCTAAGCCATGCTCGGAACCGAAACGGGTTGAAAATCCTC
GGCGAACCAATCGCTGGCAACTAGGCCACTCAATTGGTATGACCATTCCGTCGTGAGCCATTGGC
TGGGCGGAGATGGCACGGAATGCACGATGCTCGTCAATGCAAGGTTTATCCGGTGACGCAGTGGG
AGCAAGGGGAAGATCTGGAGGAAGCAGTTTGAAATTTCAAGTGGTGGTGTGGTGGCTGTTCCGGG
TAACCAAGTGGTTTCCCGGGTGACTGGCTCGTGCATTGCGTGAGACAGTTCCGGGCCAGACGTAT
TTTGGCACGTTCTTAGCATTTTCCAGGAAAATCACATCGTCCGCTTCAAAGCCAAAGCTTTGCGA
CAATTCGCTGTGTCTTCGTTTGCACATTCAGTCCATAGCGTTTGG
Found at i:46459 original size:7 final size:7
Alignment explanation
Indices: 46449--46477 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
46439 TGTTCGGTGT
46449 GTGCTCG
1 GTGCTCG
46456 GTGCTCG
1 GTGCTCG
46463 GTGCTCG
1 GTGCTCG
46470 GTGCTCG
1 GTGCTCG
46477 G
1 G
46478 AGTGCGCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.45, T:0.28
Consensus pattern (7 bp):
GTGCTCG
Left flanking sequence: Indices 45949 -- 46448
GGGGAGAGGGTGTTGAGGGAGAGAGGGTGTTGAGGGCAGAGGGTGTTGAGAGAAGTGGCTGTGTT
GGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCTTTCAGGGTTTCCTATGCCCTATGCCTATGAC
TGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACCGTCGCAAAGGCCCAGCGGTC
TCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTGTTGCAACGGCTAGACCCTGT
GACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTCGCGGTGTGGATCGTACGAGG
GGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGGCTTAAGAGGCAAGAGAAGCG
GTTGCTGTTATGCTTGGTTGTGCTGGTGCGGTGCCGTGAATGTGTGTGGTGTGTGCACAATGTGT
GTGGTGTGTGCACAATGTGTGCGGTGTGTATGGTGTGTTCGGTGT
Right flanking sequence: Indices 46478 -- 46977
AGTGCGCTCAAGGTGCACTTGATGTGCATTAGGGGTGTCGAGGTGGCTAAGCCATGCTCGGAACC
GAAACGGGTTGAAAATCCTCGGCGAACCAATCGCTGGCAACTAGGCCACTCAATTGGTATGACCA
TTCCGTCGTGAGCCATTGGCTGGGCGGAGATGGCACGGAATGCACGATGCTCGTCAATGCAAGGT
TTATCCGGTGACGCAGTGGGAGCAAGGGGAAGATCTGGAGGAAGCAGTTTGAAATTTCAAGTGGT
GGTGTGGTGGCTGTTCCGGGTAACCAAGTGGTTTCCCGGGTGACTGGCTCGTGCATTGCGTGAGA
CAGTTCCGGGCCAGACGTATTTTGGCACGTTCTTAGCATTTTCCAGGAAAATCACATCGTCCGCT
TCAAAGCCAAAGCTTTGCGACAATTCGCTGTGTCTTCGTTTGCACATTCAGTCCATAGCGTTTGG
CACTTGACTATTCCCCCTTTGGAAGCTACTACCGAGCTCACCCAA
Found at i:48563 original size:21 final size:21
Alignment explanation
Indices: 48524--48563 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
48514 CCGCAAGGCC
* * *
48524 GAGACCAAGGAGTTGCGAGCA
1 GAGAACAAGGAGCTCCGAGCA
48545 GAGAACAAGGAGCTCCGAG
1 GAGAACAAGGAGCTCCGAG
48564 GGATGGTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.20, G:0.38, T:0.07
Consensus pattern (21 bp):
GAGAACAAGGAGCTCCGAGCA
Left flanking sequence: Indices 48024 -- 48523
GCCAATTCCGCCCGATGTCCGACGACAGCGACTGCATCAGCACCCCAGCCCGACTGCTCATCCTG
GACCTGACCGTCCAGTACGAGGATATCGACGCGTTTGACGCCAAAGAGATCGACGACTTTGTGGA
GCTGCTGCTGAAATCAGAGAAAAAGCTGCAAAAACTGGGGAAACTGGGGTCTTCCCAGGCCAACA
TGACCACGGTGTTAGTGGGGTTGAACAAAGAAGAGCCGGTGGACGAGTTGCACATCGACGTCGAC
CTGCTGCAGATCAGTGCCGAGTTTGAGGCGCTCAAACTGGAGTTTGAGACGACGTTGGCGGCCAA
GGTGATGCTGTTGGAGCGTGAGTTCGACCGCCAGCTCCAGTCGCACGTCGACCACCTGTTGAAGA
TGCAGAAAGAACAGACCGACGCGTTCAACGTGTTCCGAGCCTCGTTCGAGACCAACTTGAAGGTG
TTGATGGCGGAGTTTTTGTTGGCGGAGGCAGACGACCGCAAGGCC
Right flanking sequence: Indices 48564 -- 49063
GGATGGTGAAGGACCTCAGCCACCGGGTAGCGTCGTTGGAGCGCAAACGGGTGCGCGACCGCAAG
GCCAAGGCGAAGGAGATGGCGGCCAAGCAGATGAACGGCAACACCGAGAACCACTTTTTGCACCT
GATACCGCCCACGGGGCCGTCGAGCCCCAAGATGATGATTGTGCCCAACTCGAGCGGGTCCGAAT
AGTGTATAGCATAGGTGGCACCGCCACACCAGCACGCCAGCGGGTCTCTGGCCACAATGGCCGTA
CACGGCCCACCCGTCTTGGGCACTAATAGCAAGGCCGGACCACTGGAGCGTCTATTTATCTTATG
AATTCATTTTTGTATTAGCAAAGGAGGGGGTAGGGATGGCAGTTTGAATTAGGGAGGTGGTAGTT
GTGAGGTTGTGTCTGAGAGAAGCGGATGTCTGCTGAAGGGCGAGTTTAGGCTTGATGTATATAAG
TTGGAGTAGAGGTTATGGCTTATCATTGTGATCCATGGCTACGCA
Found at i:51853 original size:12 final size:12
Alignment explanation
Indices: 51836--51873 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
51826 GGAATTCGGC
51836 CACCGTCGTAGA
1 CACCGTCGTAGA
51848 CACCGTCGTAGA
1 CACCGTCGTAGA
51860 CACCGTCGTAGA
1 CACCGTCGTAGA
51872 CA
1 CA
51874 GTTGACACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.26, C:0.34, G:0.24, T:0.16
Consensus pattern (12 bp):
CACCGTCGTAGA
Left flanking sequence: Indices 51336 -- 51835
AGGCCACAGCGATATGCAAGGGGGCTTGGCTGCAAATCTGGCCTTACCCATGCATTGACGGTAGG
GTAGAGGAATGTGTGCAGAGGGAACGATTAGTGGAGGGAAGGACTGTTCTGTGGCCCCTAGGTTT
TGCATAGACACCTCAATTAGCCCGTAAAGACACGTAGCTGTGTTCATGGTGTCAATTGAAGCTAA
TTTGGCGCCAAAGCAGCTTCACATTAGTAGAGGTATTGTTCAAGGATCGGGGAAGAGATCATCTA
CCATAACATACGAGTACCATGTCATCGCTACCTGCTCAATTGCATAAAATACACTTCGTCATCGA
GCATGAGTTCCAATGGCCACTAATGAAGACGAAACAAATCCTGGCGCAATACACTTTAGACTAAA
TGGAGGTCCTAGACTGAATCCATGATCTTTTTACGAATTCATCTCACCGGGGGTTTCCTGTTCCC
GTTGACTATCGCCACCAGATGGGTTCTTTCACCCTGGAATTCGGC
Right flanking sequence: Indices 51874 -- 52373
GTTGACACTACCATCTCATCGACGACTTCATCCCCACTAGATTGCTCTTAGCCCACTCTATTCCA
CCGTTTCCTGTCACATTCACCAGGGCCCAGCAAGAAAAAAAGGAACAAACACCACCAACCAACCA
CCCACAACACCTCCACACCGCCCAATTCCTACTCAACCACAACCAACACACCACCAGCCACCCCA
CATCTACCCCCACCTCCACCCCCCTGCCCCATGCGCCCGTCCACCCTTCTTCTCTTCCTTCTTCC
CGTTTTGTGTCTCGATTGCATATTGCATGCTCGCGAATCAATCAGCCCTACTATGAGTCTCAAGC
AATTCCTTCTGAAGGTTCGCGGGGTGCGCCCCCAGGCGTTTGTCACGGGCAACCAGAGTGCTGAC
ATGGACTCCACCATCTGTGCTTTGGTGTACGCCTACTACGCCCAGCTCGCTGAGCCCAGCACTTG
GTTGGTGCCGTTAATCAACATCCCTCGCGCTGATTTCCGTCTCCG
Found at i:53430 original size:23 final size:23
Alignment explanation
Indices: 53400--53464 Score: 114
Period size: 23 Copynumber: 2.9 Consensus size: 23
53390 ACCATTCGTA
53400 TGACAATACCGTACACACAAGTT
1 TGACAATACCGTACACACAAGTT
53423 TGACAATACCGTACACACAAGTT
1 TGACAATACCGTACACACAAGTT
*
53446 TGACAATA-CATACACACAA
1 TGACAATACCGTACACACAA
53465 CCCTACTCTC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
22 10 0.24
23 31 0.76
ACGTcount: A:0.43, C:0.26, G:0.11, T:0.20
Consensus pattern (23 bp):
TGACAATACCGTACACACAAGTT
Left flanking sequence: Indices 52900 -- 53399
CTCGGTGACGTGTTGCGTAAGGACTACAAGCAGTTCAACTTCAACGGGGTGGAGATTGGGTTCCT
GTCGATTGGCAAGCTGTTTGCCTGGGTGTTGACCACCTACGACGACGCCCACATCAAGAACGCGG
TCGCGAAGATGGTAGCCGACCACCAGTTGGACGCATTGATCGTGACGCTGTCCTACACCGCCAAG
GACACCAAGCAGTACACCCGTGAGTTTGGCATCCACGCGCGCCAGCCGCTCAACTTGGACTACGC
CATTGACAAGCTCCAGTTGGGGCGTCCCAACGCGTTGCCTCGCACCAGTGGGTCGTTTGAGATCT
GGAACCAGGGCGACGTGCTGGCCAGTAGAAAACAGGTGGTCCCGATCGTGAAGGAGGCCGTCGAG
CACCACCAGAGCTAGAATAAATGAATAGACGAATAGAGTAGAGGCAATACAATGGTGGATTACCG
AATCATTAAGGATCGTATGTGAAGCCTTGGTAGTCACCATTCGTA
Right flanking sequence: Indices 53465 -- 53964
CCCTACTCTCGTACCACGCAATGAATGGTGTCCGACCTGGTCACACAGCCCATCGTGCAACTCAC
CTCGTCCAAAGTACCCTACTCGCTTGATATCTATGCTGTATTCATTAATCATTACGTCATTACTC
TACTTTTGCTGGCTCACCGCCTTGCCCTGGCGCACACTGTTGATATCCGCAATCAACCGCTTGAC
GTCGGGGGTTTTCTGGCGCTCCACCGCGAGCACGTCCTTGATCTTGACGTTCCAGAGGGTCACCG
ACACGCTGTTGAGCTTGCGGAGCACGTTGCGCTCGACCTGGAGCGCCTGTTTGCGGTGGTGCTGG
GAAAGCATGAGAAGCCGCTTGGCGTGTGCCTGTTTGAAGTTGGCTATGAGCCTTTTCTTCTGGTC
CCGGGTGAGGGGATCAGGCATGTGTATGGGTGTGTGGTGTGTGTGTGTGGTGGTACGCGTCGCGA
AAAAGTGTCAACAGTGGAAGGAGACAAGGTTGGTGAGGGGAAGGG
Found at i:56579 original size:12 final size:12
Alignment explanation
Indices: 56562--56603 Score: 84
Period size: 12 Copynumber: 3.5 Consensus size: 12
56552 CTAGACAGTG
56562 TTGGCTACTGTA
1 TTGGCTACTGTA
56574 TTGGCTACTGTA
1 TTGGCTACTGTA
56586 TTGGCTACTGTA
1 TTGGCTACTGTA
56598 TTGGCT
1 TTGGCT
56604 TGATCCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.14, C:0.17, G:0.26, T:0.43
Consensus pattern (12 bp):
TTGGCTACTGTA
Left flanking sequence: Indices 56062 -- 56561
ACGATAGCCCCGCCCCTGGTGTAGGGGACGAGCTTCTCCGTCACGATGCCTGTCCCGCAGGCAAA
GTCGAGAATCTGGGCCCCCTGCTTGAAAAGTGAGTTGGGGAAGTTGTTGTGGTAGATCTTAGGAT
CTGGCAAAACACTCTCGTGGATACCCAAGCTGTCCAATCCCGGGTCGCCCACGACTTCCCCGCCT
TCTTCAGTTCTACAGCTGGACCTGTCTAGCTCAAGAAGCGTTTTCGCAAAAAGAGTCAGCATGGC
CCGTGTGGCATCACCACTGTCATACTGCGCAGCCACACCCTCGTCAAGCTCCTTTATGTTAGCAG
CAATGGCCTGACGATGGCTTTCATGGTCAAAGTCCATGGTGCATTGGCTGCGAAATACGCACGAA
AGTTGCAACACTACACCAACAAATCAATAATTCGCACGACACCCATGCCAGATTCTACTCCACAA
CTTGTGGTTTGGTTGATTTACATGACTAACGTTCACTAGACAGTG
Right flanking sequence: Indices 56604 -- 57103
TGATCCAAAAGTATTAACGTTTATTTCTTATTCTCGTCGCTCGACTACCTACTGTCGCAATGCGT
AGTAGCAGCTAAAGTTTAGGGTATTCATACTTGGTCTTCACCACTCGCTGGCAAAACTTGGCAGT
GAGTTTCAAAAGCTCAAGCCGGTGGAGATATTCTACTTTACCCATGTGGCAAACGTGAAATGGCA
CAGCGTTCACGTCACAATCAAGCCTTTCGTTGGGCTTGGGATTCCAATACTCGCATACGGAGCAC
CAAAACAACCTGCCAAGAGGTAAGTTCTCCAGAAAAGCTGCCAAGGTACGAAAGGCATCATATTT
TTCAGCAACATCGGGGATCGTGTTACACCAATTGGTCAACAACTCAAATTGCCGCACACGAAGAT
CATATCTCATAAGACGCAACGGTTTGTATCCGATTCGTCTGTGGTAACCCCATCTTTTCTGGGGA
TTTATCATACTCCACTCGTTCCACAACGCAATCTCGTCTGGTCTC
Found at i:61735 original size:12 final size:12
Alignment explanation
Indices: 61718--61744 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
61708 GAAGGAGAGC
61718 CCCAGAGACAGT
1 CCCAGAGACAGT
61730 CCCAGAGACAGT
1 CCCAGAGACAGT
61742 CCC
1 CCC
61745 CGGGTGCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
CCCAGAGACAGT
Left flanking sequence: Indices 61218 -- 61717
TGGACATCGGCTTTGACGTGGCCGCTGCCAACGATGCCATTGACCGCAAGGGCTGCGATGTCCAG
GCGTGTGTCAACTATATCATGGCCAAGGCTGCTGGGAAGGAGGACAGCGGGGACTCCAGAAGACC
CGCTTCCGGGCGTCTGAGCCGCCAGAGCCGCCCACAGAACCCGTCACAGCCCAGTGACGACGACA
TCCTCCGCCGGGACACCCCCGATTGGCTCAACAAGGGTGTTTCCATGGGATTTTCCCTCTGGTCC
AAGGCCAACCAGACGATCAAAAAGAACATCGACCAGTTTGTGGAGGGGCCCGCTCGCGACGACGG
GTTGCCTGCGTGGATGCAGCTGGCCCAGAAATACAAGCTGGAGGCGCTCGAGAAGAAGTATGGGG
GCGAGGATTACGGGCTGGACCTGGAGAACATCGACCAGGAGGAGATCCAGCGGATCATGCGCGAG
GAGCGCGAGAAGCGCGAGCGACGGAGGTACGAGGGGAAGGAGAGC
Right flanking sequence: Indices 61745 -- 62244
CGGGTGCTGGGCGAGCGCCCGCGGTCGGGACGCGCGCTGGCTGAGCCTCGCTCTGGGCGGGTGCT
GGCTGAGCCTCGGGGGTCTGGACGAGCACTGGCTGAGCCCAGAGCCCCAGTCAAGCCTTCTCGTG
CCGAGCCCGAGGAGTACGCACTTCCCCAGCGTCCGCTGCGGCGCCAGAGACCGTCGGAGTCTGCT
TCTGAGAGCTCGCGGCCAGCTTCGCGGACTGCTGTGCCTGCTCCCAGCCAAGAGCGAGCCTCGCC
CGCGCCGCCAAAGCCGGCTCCGGCTCCCACGGCCGAGTTTGACCTCTTGGGGATCAACTCTGCGC
CCACATCGCTGCTTCGGAGCACGGCTCCCCTCAACCAGTTTGAGGAGGTGGACTACTCCACCGCC
AAGGACACGGCCAGCGAAGCCTACCGCACGGGCGACTACTCCACCGCGCTCGAGCTGTACCAGCG
GTGTCTCGAACGGCTTCCCGAGAGTCACGAGCTCCGCGTAGTGAT
Found at i:62447 original size:21 final size:21
Alignment explanation
Indices: 62422--62461 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62412 CCGAGGTGTA
62422 CGAGCTCTTGGAGAAGTACGC
1 CGAGCTCTTGGAGAAGTACGC
* *
62443 CGAGCTGTTGGAGATGTAC
1 CGAGCTCTTGGAGAAGTAC
62462 ACGGTGTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (21 bp):
CGAGCTCTTGGAGAAGTACGC
Left flanking sequence: Indices 61922 -- 62421
AGACCGTCGGAGTCTGCTTCTGAGAGCTCGCGGCCAGCTTCGCGGACTGCTGTGCCTGCTCCCAG
CCAAGAGCGAGCCTCGCCCGCGCCGCCAAAGCCGGCTCCGGCTCCCACGGCCGAGTTTGACCTCT
TGGGGATCAACTCTGCGCCCACATCGCTGCTTCGGAGCACGGCTCCCCTCAACCAGTTTGAGGAG
GTGGACTACTCCACCGCCAAGGACACGGCCAGCGAAGCCTACCGCACGGGCGACTACTCCACCGC
GCTCGAGCTGTACCAGCGGTGTCTCGAACGGCTTCCCGAGAGTCACGAGCTCCGCGTAGTGATCG
CTCTGAACCTCGGGGTGGTGTATAAGCATGTGGGCCAGTTGAAGGACTCGCTCGCGGCCATCGAG
GCCGGTATGGCTCTCGTAGACCCCGAGGAAGTCAATGGCCCTGCCCAGATCGGGGGGAAGCCTGC
CAAGTACTGGTACACCAAGATGGTGCTCACCAAGGCCGAGGTGTA
Right flanking sequence: Indices 62462 -- 62961
ACGGTGTTGGTGACCAAATTGGGGGTGTCCGACCGCAAGGTGACCGACGGCAAGCGCAGAGTGGA
CAAGGTGGTGAACCCGCAGAACTACCGCCCCAAGCCCGCGAAGAAGAGCGCTCCCGCTGCTCCGA
AAGCGGCTCCCAAGCCCAAGCAGGCTGCTCCCAAGCTGACGGAGCCGTCCTCCGAGCAGCTTGAT
GCGATCGAGCAAGAGGTGATTGCCTGGGCTACCCGCAAACAGAACAACCTCCGGGGTATGCTCAC
CAACCTCGACGAGATCATCCCGGCCAAGATCACCATGAAGCCCCAACTCCGTAAGTTGGCGCTCA
ACGACTTGATGCTTCCGAAGCAGGTCAAGTTGTCGTACATGAAGGTGATCTCGGCCATTCACCCG
GACAAATTGGCGTCGCAGTGCCCCACGGACTCGCGGGAGTGGCTCTTGTGCAACTCGGTGTTTAT
CCGGTTGAACAAGGCCTGGGAGCAGTTTAAGGTGGACGAGAACGT
Found at i:64078 original size:11 final size:11
Alignment explanation
Indices: 64062--64091 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64052 GGAGATTAAA
64062 GGAGGAGGATC
1 GGAGGAGGATC
64073 GGAGGAGGATC
1 GGAGGAGGATC
*
64084 TGAGGAGG
1 GGAGGAGG
64092 TTAAACCGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.07, G:0.57, T:0.10
Consensus pattern (11 bp):
GGAGGAGGATC
Left flanking sequence: Indices 63562 -- 64061
TGGTTTGTTCCCGTACCTTTTTCTCGTACAATGCCTTGTCTTTGGTGAACGCCTTCCACGCAGGC
TCCTGCGCCGGCGAGTTCGGGTTGGGCAGGTCCAACAACTCCTGGATGCCCAAGGCAATCTGCTT
GAGAGTAATGGCTGGTCGCCAGTCCTGCTCCTCGTTGAGAATGGACAAGCACACGGTGCCCAGGG
GGTAGACGTTGGGGTGGTAGAATCCCTGAGGGAACTTGACCTTCGGGGGCTTCAGGGGATACTCC
TCAGGGAAGTCGAAGGTGATCGGGAACACGGCGTCGGCCCAGATAGTGCCGGACTTGCCCGGGAT
ACCGGCGGTCCACTTGGTGAGGTCAAGCAGGCCGTCAGCGGCCTTGTTGGGCTTGGCATAAAAGC
CGAACGGGTGGTCCTTGCGCCACTGCTTGCGTTCTTCCTTGAGACGGATATGACAAAGGGACATG
GTCTATGGTCTATTAAAGTTTGGGAAAATCCGATGGGAGATTAAA
Right flanking sequence: Indices 64092 -- 64591
TTAAACCGGAGGGGAGGAGGTTCGGGTTCGATGAGGAGGTTTCAGGAATGAGTCTCTGGGTAACC
TTCGAACGTTCTCGAACGATTCTGATGCGGTTTCAGGTTAGTCAGGCCTTAGTCAGGCACGGAAG
CTGGACTCTGGGTGTGCGGGCGGTTCAGTGGGTCTGAGTACTTCTGGATGATCGCGTTAACGCCG
CTATGAACCAGAAGCTCGGGATGTAGACGGATGTATCAAGCCCTACGGGTGTTGTGGTTCGGGAC
TCGCGCGAAAATTTTGTCCTCGGTGAGGACAGGAGACTGGGTGTGGTGCTATAAACGGAGGCGTG
CTAAATTGCGGGCTTCAAGCTCGGGTAGCTGGGCATAGCAAACTTAGCCACACTGGGGATACTGG
GCAGAAAGCTGTCAACTCACTGTTTGGTGGGGTGAAAAAAGTGTCCGCCCAGAGTGGTGGGAGCC
CATTGGCTGGGGGGGCCGCAGGAAAAGGGCGAAATGGGTGTAATC
Found at i:64819 original size:21 final size:21
Alignment explanation
Indices: 64795--64852 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
64785 ACATTAGCAA
64795 AACGTAACCAGAGCTTACGGT
1 AACGTAACCAGAGCTTACGGT
64816 AACGTAACCAGAGCTTACGGT
1 AACGTAACCAGAGCTTACGGT
64837 AACGTAACCAGAGCTT
1 AACGTAACCAGAGCTT
64853 CTTAGCGTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.19
Consensus pattern (21 bp):
AACGTAACCAGAGCTTACGGT
Left flanking sequence: Indices 64295 -- 64794
CAGAAGCTCGGGATGTAGACGGATGTATCAAGCCCTACGGGTGTTGTGGTTCGGGACTCGCGCGA
AAATTTTGTCCTCGGTGAGGACAGGAGACTGGGTGTGGTGCTATAAACGGAGGCGTGCTAAATTG
CGGGCTTCAAGCTCGGGTAGCTGGGCATAGCAAACTTAGCCACACTGGGGATACTGGGCAGAAAG
CTGTCAACTCACTGTTTGGTGGGGTGAAAAAAGTGTCCGCCCAGAGTGGTGGGAGCCCATTGGCT
GGGGGGGCCGCAGGAAAAGGGCGAAATGGGTGTAATCAGTCGCATTAAGGGGGTTTACGGGCTAG
CAGGGGGTCTGCGGACATGATCCGTGCTGTCCTACACTGTCTCGCGGCCCTTGTTCGCCTACGTT
TCCACCATTTAGGCGTCGTTACCTCTTTCCTTCCTCTTTTTTCTGTCACCTTCTAATAGTATTGT
ACCACATACCCTAGACCCGGGCGTTCACGGGGCAGACATTAGCAA
Right flanking sequence: Indices 64853 -- 65352
CTTAGCGTACATATACTACTCTCTGGTTGCCCCTCCATCCACCGTGTTGCCCCTCTTCCACACCT
TTCGTATCTACCCCTCCCCGTTACGAGCCCTTTGGAACCTTCGAGCAACCAATACCCTTCCCATA
TAACCCGAGCCCGCCCCACCTAACCCCAAAGTGCTCAATGTTTGCGGCCGTGTGTTCCGGGCGGC
CTATGCAGCTTGCCCAGCAGTTGGAGCCCACCAAATGGGGGATCTCCATTCCCAATGCCTCCAAT
ATCAACTACATCACGGTGTTCATGCTACCAAATAGCGAGTTCACTGACCCCAATTACACAGCACT
TGTGTACTTCCAGATCAAGAACCAGGAGTTCAAATTGCTTGGCGGTCTCAATCCGAACAAGCCCC
TGGCCATATACAGGTTGAACACGGCCCTGGTGGTTGACGACGACATGATGGGGGACGAAGTCAAC
ATTGGCATCTCCATTGAGCCGACACCACAAGCGGAACAGCAACTT
Found at i:65666 original size:12 final size:12
Alignment explanation
Indices: 65635--65666 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
65625 CACGGCCTTA
*
65635 GAACTAGACGTT
1 GAACTAGGCGTT
65647 GAACTAGGCGTT
1 GAACTAGGCGTT
65659 GAACTAGG
1 GAACTAGG
65667 TTGAGCTCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (12 bp):
GAACTAGGCGTT
Left flanking sequence: Indices 65135 -- 65634
TGCTACCAAATAGCGAGTTCACTGACCCCAATTACACAGCACTTGTGTACTTCCAGATCAAGAAC
CAGGAGTTCAAATTGCTTGGCGGTCTCAATCCGAACAAGCCCCTGGCCATATACAGGTTGAACAC
GGCCCTGGTGGTTGACGACGACATGATGGGGGACGAAGTCAACATTGGCATCTCCATTGAGCCGA
CACCACAAGCGGAACAGCAACTTATGCTGCTTACCCAGGCCCCCGCGGCCCCCGCAGCTCCCTCG
GCGCCCAAGAACGTGGACGAAGTCGCCACTTTGGCCAACAAGATTGTGGGACACGCTTACACCTA
CTTGGGCTCATTTATAGACAACCAGGGTAAGGTGCCCATGAAGGCTTTTGACTCGTGGTGGGATA
AGTTCAAGCAGAAGCTCCAGAATAATCCGAGGTTTTTAGACCTGGTAAATAATGATTAATGATAT
GGCAAGAAGAAACCCTAAAGAATGGCCAGCGAGTTCACGGCCTTA
Right flanking sequence: Indices 65667 -- 66166
TTGAGCTCGTCGCATCGAGTTGCCAACTTCTGATGTGAGCCATTTGCAGCCAGACACTTAATTCC
GTGCATTACACCATACATACCATATATCTCCCCAAATACGCCTTTTACAAATACCCAACAGATGT
CTTTTTACGCCTTCACCTCTCCAAGCTTAGGGGTCTTCACCTTCGCGAACTTACTCCGCATGTCC
AACTTTCTCACGTTGTCCACTACGGGGTCCAGCGGCTCGTTGATGAGGATGATCGTCGAGTTATT
AGCAAAAGGGCTGATCTCCACCCACAGTCTGACGGCGAGCTTCATAATGAAACAAAGAGTGTTGT
CCTCTCCCTCCTTTCCTTCTTCGGTAACCACAGAGTGACTGAGAAGAGCGTAGTCTTCGTCGGCA
TTCTCCACGGGGGTGCCAAAGTGACGAGCCACCTTCTCGGTAAGGGTCTCGCGCCCCTTAGCAAG
GTCCTTCAAGGCAATAATGAGCCCAAGCGATACTACGGTCTGCGG
Found at i:71347 original size:27 final size:27
Alignment explanation
Indices: 71306--71366 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
71296 TCAATCCCCG
*
71306 CCCCCACCACCTCCACCGTCTCCACCA
1 CCCCCACCACCTCCACCGTCCCCACCA
* *
71333 CCTCCACCACCTCCACTGTCCCCACCA
1 CCCCCACCACCTCCACCGTCCCCACCA
71360 CCCCCAC
1 CCCCCAC
71367 ATCCACCACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.67, G:0.03, T:0.11
Consensus pattern (27 bp):
CCCCCACCACCTCCACCGTCCCCACCA
Left flanking sequence: Indices 70806 -- 71305
TTCTAGGCAGGTCATCCGTCGTACCGGGTGCAAAGGGGAGCCATTGTCCGATCTGGCAGTTAGCT
GATGTTACCAATGGGGATGGGGTAACTCCGATTCGTGGGGTTGACCGAATCGTGGGGTGATTAGT
GTTACTACATTTTCACATTTCTGAGAGATGGAAAGAAATCAAAAAGACCAGCTGGTGTTTTCAGA
CAACGGAGATCCTCGCGGGACTCCTTGATTTTACGTGTTTGTGGTGGCCAGGGGACACAGGGGAC
ATGAGATTACTTGGCGGTCTGGTTACGAGTGATGGCCCATCAGCCCATGACAACGGTCGCCCTGA
ATAAGTGTAGGTGACTAGTCGTGTTCATTGAATACATAGTAGGCTATGCCAGTTCGGTGGGTGTT
TGTAGGTGGCCCAGATGGTTTATAATTGGGAGATTGGCCCGAATGGACACGGTCTTGGCGGCCGC
AAGCTGGTTGTCTAGTGCCAAGCGTGCCAACGGGCTCAATCCCCG
Right flanking sequence: Indices 71367 -- 71866
ATCCACCACTGTCTCCTCCGTATCCTCCATAGGACCCATCGTTGTGGCCCAGGTGGTAGGCCCCG
CCATCACTCGCGGAGCCACATACATTACCGTTGGAGTCGCGCTGGCGGCGCTCGCGACGTCGTTG
TTTGGAAGCTGAAGAACCCATGAATAGTATGAGCTCCAAGCTGGGGATCCTACTCGTTTATATAG
AGATTCGGGACGGTGTTAGTGCTTGACGTCATCTCGTATTTGGAATTTGTGTGCAGGAAGTAGTG
ATAACCACCTTCTAAAAGCGACGTGAAACGAGGTGAATAATGAAGCATGAAGCTTGATTAGGAAG
GATCGGCTATTCGGTAGCCTACTCGGCTGACCACCTCGTTTGTGTTTTGTTTTTTGGGTCGTATC
GCTTGTATGCACTATCTTTACCGCTAGACTTCGTATTGTTAAAACCCACCGCAGCTGCCTCCTCC
ACCGTCTCCCCCGCTTGAACCGCCACATCCACCACTAGAACCACC
Found at i:71366 original size:9 final size:9
Alignment explanation
Indices: 71309--71348 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
71299 ATCCCCGCCC
71309 CCACCACCT
1 CCACCACCT
**
71318 CCACCGTCT
1 CCACCACCT
71327 CCACCACCT
1 CCACCACCT
71336 CCACCACCT
1 CCACCACCT
71345 CCAC
1 CCAC
71349 TGTCCCCACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.20, C:0.65, G:0.03, T:0.12
Consensus pattern (9 bp):
CCACCACCT
Left flanking sequence: Indices 70809 -- 71308
TAGGCAGGTCATCCGTCGTACCGGGTGCAAAGGGGAGCCATTGTCCGATCTGGCAGTTAGCTGAT
GTTACCAATGGGGATGGGGTAACTCCGATTCGTGGGGTTGACCGAATCGTGGGGTGATTAGTGTT
ACTACATTTTCACATTTCTGAGAGATGGAAAGAAATCAAAAAGACCAGCTGGTGTTTTCAGACAA
CGGAGATCCTCGCGGGACTCCTTGATTTTACGTGTTTGTGGTGGCCAGGGGACACAGGGGACATG
AGATTACTTGGCGGTCTGGTTACGAGTGATGGCCCATCAGCCCATGACAACGGTCGCCCTGAATA
AGTGTAGGTGACTAGTCGTGTTCATTGAATACATAGTAGGCTATGCCAGTTCGGTGGGTGTTTGT
AGGTGGCCCAGATGGTTTATAATTGGGAGATTGGCCCGAATGGACACGGTCTTGGCGGCCGCAAG
CTGGTTGTCTAGTGCCAAGCGTGCCAACGGGCTCAATCCCCGCCC
Right flanking sequence: Indices 71349 -- 71848
TGTCCCCACCACCCCCACATCCACCACTGTCTCCTCCGTATCCTCCATAGGACCCATCGTTGTGG
CCCAGGTGGTAGGCCCCGCCATCACTCGCGGAGCCACATACATTACCGTTGGAGTCGCGCTGGCG
GCGCTCGCGACGTCGTTGTTTGGAAGCTGAAGAACCCATGAATAGTATGAGCTCCAAGCTGGGGA
TCCTACTCGTTTATATAGAGATTCGGGACGGTGTTAGTGCTTGACGTCATCTCGTATTTGGAATT
TGTGTGCAGGAAGTAGTGATAACCACCTTCTAAAAGCGACGTGAAACGAGGTGAATAATGAAGCA
TGAAGCTTGATTAGGAAGGATCGGCTATTCGGTAGCCTACTCGGCTGACCACCTCGTTTGTGTTT
TGTTTTTTGGGTCGTATCGCTTGTATGCACTATCTTTACCGCTAGACTTCGTATTGTTAAAACCC
ACCGCAGCTGCCTCCTCCACCGTCTCCCCCGCTTGAACCGCCACA
Found at i:71375 original size:27 final size:27
Alignment explanation
Indices: 71306--71379 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
71296 TCAATCCCCG
* * *
71306 CCCCCACCACCTCCACCGTCTCCACCA
1 CCCCCACCACCACCACTGTCCCCACCA
* *
71333 CCTCCACCACCTCCACTGTCCCCACCA
1 CCCCCACCACCACCACTGTCCCCACCA
71360 CCCCCA-CATCCACCACTGTC
1 CCCCCACCA-CCACCACTGTC
71380 TCCTCCGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.19, C:0.64, G:0.04, T:0.14
Consensus pattern (27 bp):
CCCCCACCACCACCACTGTCCCCACCA
Left flanking sequence: Indices 70806 -- 71305
TTCTAGGCAGGTCATCCGTCGTACCGGGTGCAAAGGGGAGCCATTGTCCGATCTGGCAGTTAGCT
GATGTTACCAATGGGGATGGGGTAACTCCGATTCGTGGGGTTGACCGAATCGTGGGGTGATTAGT
GTTACTACATTTTCACATTTCTGAGAGATGGAAAGAAATCAAAAAGACCAGCTGGTGTTTTCAGA
CAACGGAGATCCTCGCGGGACTCCTTGATTTTACGTGTTTGTGGTGGCCAGGGGACACAGGGGAC
ATGAGATTACTTGGCGGTCTGGTTACGAGTGATGGCCCATCAGCCCATGACAACGGTCGCCCTGA
ATAAGTGTAGGTGACTAGTCGTGTTCATTGAATACATAGTAGGCTATGCCAGTTCGGTGGGTGTT
TGTAGGTGGCCCAGATGGTTTATAATTGGGAGATTGGCCCGAATGGACACGGTCTTGGCGGCCGC
AAGCTGGTTGTCTAGTGCCAAGCGTGCCAACGGGCTCAATCCCCG
Right flanking sequence: Indices 71380 -- 71879
TCCTCCGTATCCTCCATAGGACCCATCGTTGTGGCCCAGGTGGTAGGCCCCGCCATCACTCGCGG
AGCCACATACATTACCGTTGGAGTCGCGCTGGCGGCGCTCGCGACGTCGTTGTTTGGAAGCTGAA
GAACCCATGAATAGTATGAGCTCCAAGCTGGGGATCCTACTCGTTTATATAGAGATTCGGGACGG
TGTTAGTGCTTGACGTCATCTCGTATTTGGAATTTGTGTGCAGGAAGTAGTGATAACCACCTTCT
AAAAGCGACGTGAAACGAGGTGAATAATGAAGCATGAAGCTTGATTAGGAAGGATCGGCTATTCG
GTAGCCTACTCGGCTGACCACCTCGTTTGTGTTTTGTTTTTTGGGTCGTATCGCTTGTATGCACT
ATCTTTACCGCTAGACTTCGTATTGTTAAAACCCACCGCAGCTGCCTCCTCCACCGTCTCCCCCG
CTTGAACCGCCACATCCACCACTAGAACCACCTCCGTCTCCCCCA
Found at i:73776 original size:12 final size:12
Alignment explanation
Indices: 73759--73798 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
73749 AGCAAGGGTA
73759 GCAGTTCTTCAC
1 GCAGTTCTTCAC
73771 GCAGTTCTTCAC
1 GCAGTTCTTCAC
*
73783 GTAGTTCTTCAC
1 GCAGTTCTTCAC
73795 GCAG
1 GCAG
73799 ACAGTCAGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.20, T:0.33
Consensus pattern (12 bp):
GCAGTTCTTCAC
Left flanking sequence: Indices 73259 -- 73758
TCATAGTTGCTGAGAATTGGGGTTTTCCCAGCGCTTTTGAGGGAAGTTCGCATAACGCCTTGTTT
CCCTTTTGGGATGACACAGGTCCCGATCGGGACTGGCATAGAGAGAAGCAGACAAATCGCCCAAT
GCTGCGGAACATGTGAGAAGCCTACGGAAGGGAAAGGAAGAGGTCTGTAATCAGTCAGAGCAGCA
CGCGCTTGAGTTGAGAGCCTGTGAGGCCAATAGGTGGTTTCGCCAACGTGGTGGCTGAAGAGGCT
TAGGCGATTGAAGTAGGGGTTGCCAGGGGTGAGGAGATTCTGAAGGAGGTGTCAACTGGTGTCTT
GGACTTTGCGGGCATGACCAGCTTGTCCGTATTCGGGCTACATCCCGAAAATCAGCCAGGCAAGT
CGTTGCGAGCTAAGCTCTAAAGAGGTAGTGCCTACAGAAAAGGTTACAAACTTACCCCTGATTTC
TTTGTAATTCCCCAGATAGCCAGTCATATAGTGCAAGCAAGGGTA
Right flanking sequence: Indices 73799 -- 74298
ACAGTCAGGCCAGGCACACTCCTAAAGTAACTAGCCACGTAGGTGGAAGTAAACCCACCCTACTT
GGGCATGCCCACCAAAAGAGCATCCCCACTCCATCACGCTCTTCCATAGTCTTATCTCATATACT
ATTACTACTTGGTATCTAGGGTATCAGTGCAACATCAGCTTGTGCTTGCGCGGCGAGCTCCGGGT
CAGTTTCGACCTCGGGAACGAGTGGCGCTCGCCAATGTCCAACAAGATCTCGTGGCGTTTCTGCA
ACTGCTCCACCGTGTTGTTGGCTTCCTCGTTCTCCTCCTCGTCCTCGATCAGATGCGCGGCAAAG
TCGTCCATGTCACCACGGTCGAAGGAAAGGTCCTCCATGTTGCGGTGGATCAAGTAGCGAAGGGC
GTTGTACCAGATGTTGTGACGCTGTCTCGACGGACAGGTGATCTTCACCAGGCGGTCGTGCGAGT
ACACGATGATCAGCTTGTGGTACAACCCCGTCGGGTAGGGGTTGT
Found at i:76569 original size:21 final size:21
Alignment explanation
Indices: 76484--76569 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
76474 TGGTGGCAGC
**
76484 CTCGTCGAGCGACGCCTGGGT
1 CTCGTCGAGCGTGGCCTGGGT
* * *
76505 CAGCG-CGAGCGCGGCCTTGGT
1 C-TCGTCGAGCGTGGCCTGGGT
* * * **
76526 CTCCTCGAGCTTGGCTTCCGT
1 CTCGTCGAGCGTGGCCTGGGT
76547 CTCGTCGAGCGTGGCCTGGGT
1 CTCGTCGAGCGTGGCCTGGGT
76568 CT
1 CT
76570 GTTTGAGCCT
Statistics
Matches: 47, Mismatches: 16, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.07, C:0.34, G:0.36, T:0.23
Consensus pattern (21 bp):
CTCGTCGAGCGTGGCCTGGGT
Left flanking sequence: Indices 75984 -- 76483
GCAAACTTGTGCTCCTTGGCCTTCAGGGTCAAGTACTCGAGGCTCGGGTGGTCGAACCGGGTCAG
CAACAGCTCGAACTCGGCCTTGGGGATCGCCACGTACCCGTGCTCGCTCGCACGCTGGGTGATGG
GCTTGTCCGCGACCTCCTTGAGTGCCTTGTAGTCGCCCACCGCAATCACAGCCATGCCAAACTCG
GCCGCGTGCGAGGTGATGTCGGTGAGACTGGGCTTGGTGGCCTTGACCACCATCTCGTCGTAGTC
CTGCGCGGGCACAAGCCGCATCTCCGCGGCCCGGGCCCGGTCCTCGAGGGTCTCCAGCGCCCGTT
TCTTGAGCCGGGCCAAGTCCGCGAGCTCGACGATCGCCATGTTGTGCTTGTCGGCCGCGGCCTTG
AGCCCGTCCACCAGCTGGAGACGCGCGTGCTCCGCGGCCGTGAGCACCACCATCTCGGGCCCGTT
GAGCTTCGCGAGCTCGTTGTCGCGGACCTTGAGGGTGGTGGCAGC
Right flanking sequence: Indices 76570 -- 77069
GTTTGAGCCTGGACGACGACGACTCCGTCAACGTCTGGGCCTCGGCCTTGGCGTCGTCGCGGGCC
TTCTCCGCCTCCGCACGCGCCTTCTCCGCCTGCTCGAGCCGGGCCATGATGGCCGCGTACTCCTC
GTCGCTGACAATCTTCTTTTGGCTCTGCTTGGCCGCCTCTTCCAACGGCATCTGCGCCTGCTTTT
GCAACGCCTCGTGGTCGTCGCGGGACACCGCCACCAACCCGAGCGCCGCCGCGGCCGCAGCAATC
CCCGCAGCCGTGCCGTGCTTGTCCGAGAGCAGCTGGTGCTGCTCCGAGAGCTCGCGGTGGCTGTC
TTCAAGCGTCGTGTGCTTACCAGAAAGGGTCGTGTGCTGCTCAGTAAGCGCCTGGTGGTCGTGGG
CAAGCGCCTGGTGCTGCTCGGTGAGCGCGTGGTGGTCGCTCTCGAGGCCCCGCTGCTTCTCCTCG
AGCTTGCCGTGGCTCTCCTGGAGCGCCCGGTGCGCCTTGGCCGTC
Found at i:80434 original size:84 final size:84
Alignment explanation
Indices: 80346--80536 Score: 208
Period size: 84 Copynumber: 2.3 Consensus size: 84
80336 CGCCTCGGGC
* * *
80346 GACGGCTGCACGAGCTGCTTGTGCTC-GTCCGCAGGCACCGCAACGAAGCCC-TGGGCCTG-GGC
1 GACGGCTCCACGAGCTGCTTGTGCTCGGT-CGCAGGCACCGCAAC-AAGCCCGT-GGCCCGCCGC
* *
80408 CAAGTCCACCACCCGCTGCTTG
63 CAACTCCACCACCCGCTCCTTG
* * ** *
80430 GACGGCTCCACGAGCAGCTGGTGCTCGGTTTCAGGCACCGCCACAAGCCCGTGGCCCGCCGCCAA
1 GACGGCTCCACGAGCTGCTTGTGCTCGGTCGCAGGCACCGCAACAAGCCCGTGGCCCGCCGCCAA
* *
80495 CTCCACCACCTGTTCCTTG
66 CTCCACCACCCGCTCCTTG
* *
80514 GACGGCTCCACAAGCTGTTTGTG
1 GACGGCTCCACGAGCTGCTTGTG
80537 TTGCTCATGG
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
83 11 0.12
84 75 0.85
85 2 0.02
ACGTcount: A:0.16, C:0.38, G:0.29, T:0.17
Consensus pattern (84 bp):
GACGGCTCCACGAGCTGCTTGTGCTCGGTCGCAGGCACCGCAACAAGCCCGTGGCCCGCCGCCAA
CTCCACCACCCGCTCCTTG
Left flanking sequence: Indices 79846 -- 80345
GCTTCACAAGCTGCTGGTGCTCGTCAGCGGGTACCGCAACGAAGCCCTGGGCCAGGGCCAACTCC
ACCACCCGCTCCTTCAGTGGCTCCACGAGCAGCTTGTGCTCAGCCTCGGGCACCGCCACCAACCC
GTGCTTGGCAGCCTCGGCCACCACCTTCTCCTTGGGCGGCTCCACAAGCAACAGGTACTCGTCCT
GGGCCACCGTCACGAGCCCAAGCCGCGACAGGTGCTCGCGCACCTGGTCGGCCAGCGGCTGCACC
AACAGCCGGTGCTCGTCGGCAGGCACCACCACCAAGCCCTTGTCCTGGGCCTTCTGGGCAAGCTG
CTCGGGCGACGGGGCCTCGAGCTGGCGGAGGGTGTCCTTGTCCACGGTAGCGAGCCCGTGGGTGG
CGGCGTGGGCCTCCACCGCCTCCTTCAGCGGCTGGGTGAGCTCGTGGTACGCGGCCTCGGGCACC
ACCTTGAGCCCGTGCGTGACCGCATGCTTCTCCACCGCCTCGGGC
Right flanking sequence: Indices 80537 -- 81036
TTGCTCATGGGGCACCGTCACCAACCCGTGGCGGCGGGCGTGCTCGTGCACCAGCTCGGCACCGG
GCAGCACCAACAGGCGGTGCTCTTCCTCAGGCACGGTGACAAGGCCGTGCCCGGCCGCCAACTCG
CGCACCCGCTCGGCCTTGGGCTTGACGAGCTCCAAGTAGGCGTCCTTGGCCACCGGGACAAACCC
TGCGGTGGTGGCCAACTTCTTGACCCGCTCCAGGCTCGGCAGCCTCAACATCTCGTACTCGTCCT
TGGGCACAGCCACCATGCCTTCGGCCTGGGCGTGGTCGCGAAGGGTGCGCTGGGCAGCCTCGCGG
AGGTGCTGCACTTCCAGCTCGGGAAGCACCGCCAACCCGTGGCGTTTCAGGTGCTCGCGCACCTC
GTCGGGCCCGGGCAGCGCCAACCGCGCGTGCTCGTCGCTGGACACCACCACGGCGCTGTGCTTGG
CGGCCGCCTGCTCGAGCTGCTCGCGGCTGGGGTCGTTGGCGCGCT
Found at i:81541 original size:21 final size:21
Alignment explanation
Indices: 81515--81555 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
81505 CGAGCTCTGC
81515 CTTGGTCGTGCCCAACTCAGT
1 CTTGGTCGTGCCCAACTCAGT
81536 CTTGGTCGTGCCCAACTCAG
1 CTTGGTCGTGCCCAACTCAG
81556 ACCGCGTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.34, G:0.24, T:0.27
Consensus pattern (21 bp):
CTTGGTCGTGCCCAACTCAGT
Left flanking sequence: Indices 81015 -- 81514
CGGCTGGGGTCGTTGGCGCGCTCCCAGAGCTTGGTGTACTCGGGCCGGGTCATGGTGAGCAACCC
GAGCTCGTCCGCGCGCACCTTGAGCTGGTCTTCCAGCACGGGAGCCACGAGCCGCTGGTGCTCGG
CCTCGGGCACCACCACCTGGCCAAGCCGGCTGGCGGAGTCCTTGACGTCGTCGAGCGTGGGCTGG
GTCAACCGCGCGTGCTCGGCCTGCGGGATGACGGTGTGGTTGAGTGCGGTGGCCCGCGAGCGCAC
CAGCGCAAGCAGCGGGGTCTCGAGCTCCACGAGGCGCTCGTCGGCCACGAGCTGGTGCTTGTGGG
CCCGCGCACGGTGGGTGAGGGTGTCCAACGACGGCTGCTGGAGGGCGTGGGCCTCGTCTTGCGCG
AGAACCACCAAGTGGAGCCGCTGGGCCATGTCGCGGACGAGGTCCGGCGACGGGTTTGCGAGCTG
GGTGGACGCCTGTTCAAGCTCGGCCGTGGCCTTTTCGAGCTCTGC
Right flanking sequence: Indices 81556 -- 82055
ACCGCGTCGTGTCCAACTCAGATTTCGCGGTGGTCAACGCGGTCGCGGTCGTGTCCAACTCAGAA
CGGGTCGTGTCCAACACAGACTTGGTAGAGACAAGCTCGGCTTGCGCCTGTTCAAGCGCCACCGC
CCGCTCCTGCTCGCGCTGGTGGGCAGCGTCCATCTGGCGGGTGTGTTCCGCCACCGTATGCTCCA
TCTCGCGCTTCTGTTCGCTCTGCTCCACTTCTCTCTCCCCTCTCTCCTTCTCCCTCTTCCCCTCC
AACTCCGCCTCGGGCACCACCACAAGGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGA
CACCAACTGCGCGTACTCCTCAGGCAGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCAACCG
CGGCGGTGTCGTCGCTGAGCTCGGCAAACTGCTGCGCCAGAAGCACGTGGTACCCAGCCTGGGCC
GCCGCCGCAAGCGCCAGCTCCACCGACGGCGTCTTGGCCGCCCCC
Found at i:81564 original size:21 final size:21
Alignment explanation
Indices: 81518--81577 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
81508 GCTCTGCCTT
* *
81518 GGTCGTGCCCAACTCAGTCTT
1 GGTCGTGCCCAACTCAGACTC
81539 GGTCGTGCCCAACTCAGAC-C
1 GGTCGTGCCCAACTCAGACTC
*
81559 GCGTCGTGTCCAACTCAGA
1 G-GTCGTGCCCAACTCAGA
81578 TTTCGCGGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.18, C:0.35, G:0.25, T:0.22
Consensus pattern (21 bp):
GGTCGTGCCCAACTCAGACTC
Left flanking sequence: Indices 81018 -- 81517
CTGGGGTCGTTGGCGCGCTCCCAGAGCTTGGTGTACTCGGGCCGGGTCATGGTGAGCAACCCGAG
CTCGTCCGCGCGCACCTTGAGCTGGTCTTCCAGCACGGGAGCCACGAGCCGCTGGTGCTCGGCCT
CGGGCACCACCACCTGGCCAAGCCGGCTGGCGGAGTCCTTGACGTCGTCGAGCGTGGGCTGGGTC
AACCGCGCGTGCTCGGCCTGCGGGATGACGGTGTGGTTGAGTGCGGTGGCCCGCGAGCGCACCAG
CGCAAGCAGCGGGGTCTCGAGCTCCACGAGGCGCTCGTCGGCCACGAGCTGGTGCTTGTGGGCCC
GCGCACGGTGGGTGAGGGTGTCCAACGACGGCTGCTGGAGGGCGTGGGCCTCGTCTTGCGCGAGA
ACCACCAAGTGGAGCCGCTGGGCCATGTCGCGGACGAGGTCCGGCGACGGGTTTGCGAGCTGGGT
GGACGCCTGTTCAAGCTCGGCCGTGGCCTTTTCGAGCTCTGCCTT
Right flanking sequence: Indices 81578 -- 82077
TTTCGCGGTGGTCAACGCGGTCGCGGTCGTGTCCAACTCAGAACGGGTCGTGTCCAACACAGACT
TGGTAGAGACAAGCTCGGCTTGCGCCTGTTCAAGCGCCACCGCCCGCTCCTGCTCGCGCTGGTGG
GCAGCGTCCATCTGGCGGGTGTGTTCCGCCACCGTATGCTCCATCTCGCGCTTCTGTTCGCTCTG
CTCCACTTCTCTCTCCCCTCTCTCCTTCTCCCTCTTCCCCTCCAACTCCGCCTCGGGCACCACCA
CAAGGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGACACCAACTGCGCGTACTCCTCA
GGCAGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCAACCGCGGCGGTGTCGTCGCTGAGCTC
GGCAAACTGCTGCGCCAGAAGCACGTGGTACCCAGCCTGGGCCGCCGCCGCAAGCGCCAGCTCCA
CCGACGGCGTCTTGGCCGCCCCCGTGAGCTGCTGGTACTCGTCGT
Found at i:82285 original size:12 final size:12
Alignment explanation
Indices: 82276--82304 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
82266 CCCGAGCCCT
82276 CCAGCGAGCCAG
1 CCAGCGAGCCAG
82288 CCAGCGAGCCAG
1 CCAGCGAGCCAG
82300 CCAGC
1 CCAGC
82305 CCAGAGCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.45, G:0.31, T:0.00
Consensus pattern (12 bp):
CCAGCGAGCCAG
Left flanking sequence: Indices 81776 -- 82275
CACTTCTCTCTCCCCTCTCTCCTTCTCCCTCTTCCCCTCCAACTCCGCCTCGGGCACCACCACAA
GGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGACACCAACTGCGCGTACTCCTCAGGC
AGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCAACCGCGGCGGTGTCGTCGCTGAGCTCGGC
AAACTGCTGCGCCAGAAGCACGTGGTACCCAGCCTGGGCCGCCGCCGCAAGCGCCAGCTCCACCG
ACGGCGTCTTGGCCGCCCCCGTGAGCTGCTGGTACTCGTCGTAGGGAATCATCACGAGATTGCGC
TCGCTGACGTAAGCGTCGATCTTCTTCTGGGACGCCTGGCGCCGCAACTGGTTGGTGAAGAGCGC
TGCCGCCTCTCTCAGCGCCCCGTCGTCCTCGTCGGACAGGTCCTCGACGTGCACGAACCCAGGTG
CCTCGTCTCCGCCAAACTCAAACAGGGTGTCCAGCCCCGAGCCCT
Right flanking sequence: Indices 82305 -- 82804
CCAGAGCCCCGCTCGAAGCCCCGCTCGAAGCCTGCGCCTGGCTGGCTCCCACGGTGCTTCTCCTG
GCCCACCTTGTGATTCTCCGGGTGCTGGAGGTCCAAGAAGTCTTCCCAGTCGCCGCCCGGGGCGC
TGGTGGCGTCCACCACGAGCAGCTCGCGTTTCAGCGGCGAAAGCCCGCGTTTGGCGGAAGCCGGC
CCGCTGGGACCGCTCCCAAAGTGGCCCAGACGGCGCTGGCGGGCCTTGCGAGGCAGCAGCGGCGC
CTTTTCCGTCTCCACGACGGGGGTTTCCTTGCGCTGCTTGACCACCTGGTGGCGTAACCGGGCGA
TGGTGCGGTTGGCGTGGGCCAAGTTGGCGCGGAGGGTCTCCGCCTCCATCTTCGGGTTGTGTCCG
TCGCTGGGCGGCACCGCCTGTGGCTGGAGCTGGCGGAAGAGCTCGTCAAAGTCGAGGTCGTCGTC
TTCGGTTTCGAGCCCGGGCACCAGATCAACCGGGGGCGCGTCCCC
Found at i:82326 original size:12 final size:12
Alignment explanation
Indices: 82309--82336 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
82299 GCCAGCCCAG
82309 AGCCCCGCTCGA
1 AGCCCCGCTCGA
82321 AGCCCCGCTCGA
1 AGCCCCGCTCGA
82333 AGCC
1 AGCC
82337 TGCGCCTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.50, G:0.25, T:0.07
Consensus pattern (12 bp):
AGCCCCGCTCGA
Left flanking sequence: Indices 81809 -- 82308
CCCCTCCAACTCCGCCTCGGGCACCACCACAAGGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCT
GCTCAGACACCAACTGCGCGTACTCCTCAGGCAGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGG
GCAACCGCGGCGGTGTCGTCGCTGAGCTCGGCAAACTGCTGCGCCAGAAGCACGTGGTACCCAGC
CTGGGCCGCCGCCGCAAGCGCCAGCTCCACCGACGGCGTCTTGGCCGCCCCCGTGAGCTGCTGGT
ACTCGTCGTAGGGAATCATCACGAGATTGCGCTCGCTGACGTAAGCGTCGATCTTCTTCTGGGAC
GCCTGGCGCCGCAACTGGTTGGTGAAGAGCGCTGCCGCCTCTCTCAGCGCCCCGTCGTCCTCGTC
GGACAGGTCCTCGACGTGCACGAACCCAGGTGCCTCGTCTCCGCCAAACTCAAACAGGGTGTCCA
GCCCCGAGCCCTCCAGCGAGCCAGCCAGCGAGCCAGCCAGCCCAG
Right flanking sequence: Indices 82337 -- 82836
TGCGCCTGGCTGGCTCCCACGGTGCTTCTCCTGGCCCACCTTGTGATTCTCCGGGTGCTGGAGGT
CCAAGAAGTCTTCCCAGTCGCCGCCCGGGGCGCTGGTGGCGTCCACCACGAGCAGCTCGCGTTTC
AGCGGCGAAAGCCCGCGTTTGGCGGAAGCCGGCCCGCTGGGACCGCTCCCAAAGTGGCCCAGACG
GCGCTGGCGGGCCTTGCGAGGCAGCAGCGGCGCCTTTTCCGTCTCCACGACGGGGGTTTCCTTGC
GCTGCTTGACCACCTGGTGGCGTAACCGGGCGATGGTGCGGTTGGCGTGGGCCAAGTTGGCGCGG
AGGGTCTCCGCCTCCATCTTCGGGTTGTGTCCGTCGCTGGGCGGCACCGCCTGTGGCTGGAGCTG
GCGGAAGAGCTCGTCAAAGTCGAGGTCGTCGTCTTCGGTTTCGAGCCCGGGCACCAGATCAACCG
GGGGCGCGTCCCCCGGGGTCGGGGCAGCGGCGGCGGGGGCGGGGG
Found at i:84855 original size:13 final size:13
Alignment explanation
Indices: 84832--84871 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
84822 CGGTACAGGG
84832 CCCAGCCGGAACTA
1 CCCA-CCGGAACTA
84846 CCCACCGGAACTA
1 CCCACCGGAACTA
**
84859 GTCACCGGAACTA
1 CCCACCGGAACTA
84872 ACCGTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.30, C:0.40, G:0.20, T:0.10
Consensus pattern (13 bp):
CCCACCGGAACTA
Left flanking sequence: Indices 84332 -- 84831
GAAAGAAAAGGGGTGAAAAAAAAAAAACGGGAAGACAGAGAAGAAAGAGAAAAAAAGGATGTGGA
GAAAAAGGGGTGGTGTGGGTGGATAGACTGTTTGAGTAGGGAGTTCTGGTCAGGTTAGCCCACTT
GGCTCGCTGGGAACAGCATGTCTAGGCGACTGAATCCCGACACGGGCTGACGCAGCGAGTGAACG
GGATGAGTGGGGAAATAAGGATGGTTACTTGGTAGAGGTGAGGAGGTTGCGTAGTCTGTTTTTTA
TTTGAGTTGGTAGCCTCTAGAAAATGTCTGTCTCTTGTGATGTCAGTATCTTGTGGTGTCTGTCC
TGTGACGTGACTGTACGCGAGCTGGCGTCTGGCAAGTATACCCGTCGGCGATCTCGGCTAGCGTC
TAGTGGGCAAGCGAGCCGAGTGCGGTCCCATGGGACGTCTGCGTCAGGCGTCCGGACAATCTCGT
GATTTCTACAATAAAGCCTTGGAGCGGTTTATCCGCGGTACAGGG
Right flanking sequence: Indices 84872 -- 85371
ACCGTTTTCAGGTACCGTTTGATTATTTTGCGTTTATTTCTCTGCTTTGATTCCCATGTGATCGT
GCGACCAACGTTCATTTGCAGCCACGATCGGCAAAAGAAGGGCAGCAGAGAGCATGGAAAACGCG
TGATGCCGGGGGTGGGGTTTGTCAGCTTCTGATTGGGTCTTTTCGCTTGGATTAGCGTTGTCTCC
CTGGCCGTCCCTGAAGGCTCGCTTGGGCCAACCGTTGGTCGTCTCGGAACAATAGTATTGTTTTA
TGCCCGTTAGCCCGGGACGATCGAGTGGCAATAGGGTGCGTTTACAACTTCTGGATCGGTAATTA
AGCTTGCTTGTGATAATGTAGGGCAGTGGGGACAGGTAGAATCTTTTAGGCTCGGAGCTGGGAAG
TAGGTTAAGAAGGCGTGCAGTCAAAAAGATGGAGTGGAGGTTAAGAAGGCGTGCAGTTGAAGAGC
CGGAGAGAAGGTTAAGAAGGTGTGCTTCGATGGACGATCGAGGTT
Found at i:85339 original size:36 final size:36
Alignment explanation
Indices: 85263--85351 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 36
85253 GCTGGGAAGT
* * *
85263 AGGTTAAGAAGGCGTGCAGTCAAAAAGATGGAGTGG
1 AGGTTAAGAAGGCGTGCAGTCAAAAAGACGGAGAGA
** * *
85299 AGGTTAAGAAGGCGTGCAGTTGAAGAGCCGGAGAGA
1 AGGTTAAGAAGGCGTGCAGTCAAAAAGACGGAGAGA
*
85335 AGGTTAAGAAGGTGTGC
1 AGGTTAAGAAGGCGTGC
85352 TTCGATGGAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.34, C:0.09, G:0.40, T:0.17
Consensus pattern (36 bp):
AGGTTAAGAAGGCGTGCAGTCAAAAAGACGGAGAGA
Left flanking sequence: Indices 84763 -- 85262
CGTCAGGCGTCCGGACAATCTCGTGATTTCTACAATAAAGCCTTGGAGCGGTTTATCCGCGGTAC
AGGGCCCAGCCGGAACTACCCACCGGAACTAGTCACCGGAACTAACCGTTTTCAGGTACCGTTTG
ATTATTTTGCGTTTATTTCTCTGCTTTGATTCCCATGTGATCGTGCGACCAACGTTCATTTGCAG
CCACGATCGGCAAAAGAAGGGCAGCAGAGAGCATGGAAAACGCGTGATGCCGGGGGTGGGGTTTG
TCAGCTTCTGATTGGGTCTTTTCGCTTGGATTAGCGTTGTCTCCCTGGCCGTCCCTGAAGGCTCG
CTTGGGCCAACCGTTGGTCGTCTCGGAACAATAGTATTGTTTTATGCCCGTTAGCCCGGGACGAT
CGAGTGGCAATAGGGTGCGTTTACAACTTCTGGATCGGTAATTAAGCTTGCTTGTGATAATGTAG
GGCAGTGGGGACAGGTAGAATCTTTTAGGCTCGGAGCTGGGAAGT
Right flanking sequence: Indices 85352 -- 85851
TTCGATGGACGATCGAGGTTAAACCTTGAACCCAGTTTGTGTCTGATTATCCGTGGTGTCTGGCG
GTATTGTCTTGTGAATACTGGCTGCAAATTTTTGGTGCGATCGTAAAAGTGTCAGAATATGGAAA
ATCTTGTGAAAGTGTGACGAAAGGGTAGAACTGAACAAACCCCAGGGTAGCAAGAATTATAATGC
TATTTTACAGTATTTGCATGCGTCCAAAAAACCTTGACCACACAAATGTCAATCTCATTGAATCT
AATAATAAACACACAGTAAGCCATTCATCAACTGCAATGCCTATCAATACAATGACACCAATGCC
ATGCCATCAAATACAAAGCCATCAAATACCGTGCTATCATACCATGCCACCAACCCACCCAATCA
ACTTTCTATTCTCGGAACCTTACCAACCAAACATTCTAACCTACTAACCTTCATTTCTATTCCTT
TATTCCTCTACGCTGTGCCCTATACTCTCCTTACACGTCCTTATA
Found at i:87236 original size:12 final size:12
Alignment explanation
Indices: 87216--87253 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
87206 GACAGCCGTG
87216 GGGTA-GTGGGT
1 GGGTAGGTGGGT
*
87227 GGGTAGGTGGCT
1 GGGTAGGTGGGT
*
87239 GGGTGGGTGGGT
1 GGGTAGGTGGGT
87251 GGG
1 GGG
87254 CTGAGAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 5 0.22
12 18 0.78
ACGTcount: A:0.05, C:0.03, G:0.68, T:0.24
Consensus pattern (12 bp):
GGGTAGGTGGGT
Left flanking sequence: Indices 86716 -- 87215
TCGGGCTTCAAATCCCGGTAGATGATGTCCAAGTTGTGGAGGTACTCGATGGCGAGGAACACCTC
GGCCGCGTAGAACTTGGCCACCGGCGTCGGAAACCGCTGACTCTTGCGCAAGAGCGAGAAAAGCT
CCCCGCCCTCGATGTAGTCCATAATCATGAAAAGATTGTGGCAGTCCTGAAACGTGCCCCACATC
CGGATGATAAACGGGTGCTGGGCAAGCTTCAACATGCGTCGTTCGTCGTTGGTGTGCTCCACCTG
CTTCATGTTCACCACCCTCTCTTTTTTGAGGGTCTTCATGGCGTAGAACCGCCCGTTGTGCACCA
GCCGGGCCAAATGCACCCGGCCAAACAGCCCGGTGCCAAGGGTGCGGAGGATCTGGAAGTCGTTG
AGCGTGTATTTGCCCTTGGTGGTGGTGTCCCGGGATCTGTACATGGAGGGTGTCAACGGTGAAAT
TTTCGATCAAACGGCCGGGTGGGTTATACGCAGGAGACAGCCGTG
Right flanking sequence: Indices 87254 -- 87753
CTGAGAAGAAGGGGCGTTGTGTGGTGGGTGGTGGTGGGGGGAAGATGGTGACCTGCTTTTTTTTT
GTGGATGGGGGGATCTGGCGGTATAAAAGGACGCTGCTTGTTTCTTTTTTTATGTGAAATTGGCT
ACAGAGACCAGAGGTGGTTGGGTGGAGGGAAGCGAGGGAAGAGGGCGGTTGTGGTGGCTGGGAGG
GGTTTTAAGGGGTTGGGGAGTGCTATAGAGATTGTTACTTGTTGTGTTGGTTTGCCCCTTATTGT
CTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCAACCGGGCACGTGACAGG
ATAGGGTGGTGGGAGTAGTGGGTGAAGATGGTGGTGAGTGTAGTGGATGGGATGGTAGATAGTTG
GAGGTAGTACGGGTGGATGGGTGTGTTGCTACAGTTTAGGCTTAGTCTCTTTGGTCTCGTAGTGC
TGTTAGTTGAACCAGCTTAGCCTCGTGTGGCCTAATCCCTCGCGT
Found at i:87243 original size:16 final size:16
Alignment explanation
Indices: 87222--87252 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87212 CGTGGGGTAG
87222 TGGGTGGGTAGGTGGC
1 TGGGTGGGTAGGTGGC
*
87238 TGGGTGGGTGGGTGG
1 TGGGTGGGTAGGTGG
87253 GCTGAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.03, G:0.68, T:0.26
Consensus pattern (16 bp):
TGGGTGGGTAGGTGGC
Left flanking sequence: Indices 86722 -- 87221
TTCAAATCCCGGTAGATGATGTCCAAGTTGTGGAGGTACTCGATGGCGAGGAACACCTCGGCCGC
GTAGAACTTGGCCACCGGCGTCGGAAACCGCTGACTCTTGCGCAAGAGCGAGAAAAGCTCCCCGC
CCTCGATGTAGTCCATAATCATGAAAAGATTGTGGCAGTCCTGAAACGTGCCCCACATCCGGATG
ATAAACGGGTGCTGGGCAAGCTTCAACATGCGTCGTTCGTCGTTGGTGTGCTCCACCTGCTTCAT
GTTCACCACCCTCTCTTTTTTGAGGGTCTTCATGGCGTAGAACCGCCCGTTGTGCACCAGCCGGG
CCAAATGCACCCGGCCAAACAGCCCGGTGCCAAGGGTGCGGAGGATCTGGAAGTCGTTGAGCGTG
TATTTGCCCTTGGTGGTGGTGTCCCGGGATCTGTACATGGAGGGTGTCAACGGTGAAATTTTCGA
TCAAACGGCCGGGTGGGTTATACGCAGGAGACAGCCGTGGGGTAG
Right flanking sequence: Indices 87253 -- 87752
GCTGAGAAGAAGGGGCGTTGTGTGGTGGGTGGTGGTGGGGGGAAGATGGTGACCTGCTTTTTTTT
TGTGGATGGGGGGATCTGGCGGTATAAAAGGACGCTGCTTGTTTCTTTTTTTATGTGAAATTGGC
TACAGAGACCAGAGGTGGTTGGGTGGAGGGAAGCGAGGGAAGAGGGCGGTTGTGGTGGCTGGGAG
GGGTTTTAAGGGGTTGGGGAGTGCTATAGAGATTGTTACTTGTTGTGTTGGTTTGCCCCTTATTG
TCTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCAACCGGGCACGTGACAG
GATAGGGTGGTGGGAGTAGTGGGTGAAGATGGTGGTGAGTGTAGTGGATGGGATGGTAGATAGTT
GGAGGTAGTACGGGTGGATGGGTGTGTTGCTACAGTTTAGGCTTAGTCTCTTTGGTCTCGTAGTG
CTGTTAGTTGAACCAGCTTAGCCTCGTGTGGCCTAATCCCTCGCG
Found at i:88048 original size:18 final size:18
Alignment explanation
Indices: 88000--88062 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
87990 CTGGTGGATT
*
88000 CCAGCTTCTACCGTATTTA
1 CCAGCTTC-ACCGTGTTTA
*
88019 CCGTGCTT-ACCGTGTTTA
1 CC-AGCTTCACCGTGTTTA
*
88037 CCAGCTTCACCGGGTTTA
1 CCAGCTTCACCGTGTTTA
88055 CCAGCTTC
1 CCAGCTTC
88063 TACTGTGTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
17 4 0.11
18 28 0.74
19 2 0.05
20 4 0.11
ACGTcount: A:0.16, C:0.33, G:0.17, T:0.33
Consensus pattern (18 bp):
CCAGCTTCACCGTGTTTA
Left flanking sequence: Indices 87500 -- 87999
TTGCCCCTTATTGTCTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCAACC
GGGCACGTGACAGGATAGGGTGGTGGGAGTAGTGGGTGAAGATGGTGGTGAGTGTAGTGGATGGG
ATGGTAGATAGTTGGAGGTAGTACGGGTGGATGGGTGTGTTGCTACAGTTTAGGCTTAGTCTCTT
TGGTCTCGTAGTGCTGTTAGTTGAACCAGCTTAGCCTCGTGTGGCCTAATCCCTCGCGTTCCCTT
GCACAGCCCTGTCAAACTGGCAGGACGTTATGCAGTGGTGGTGCCGCGTGCAACGCTTATCGGGC
TCGGCCATGTGCAGCTCGGAGCGTCGCCGTATATGCTGCCGCTTTCGGTGGTCGGGTCCACCTGC
CTGGTAACTGAGCGAAGAGACCCTGAAAAGCAATGCCGACACCGAAATAAGCTTTCCTGCCGCAG
GAAGCGGACGAGAGCAGGCAGAGGGAGGCTGTCCACTGGTGGATT
Right flanking sequence: Indices 88063 -- 88562
TACTGTGTCTTGCCCACCCTATTGTTGGCTCGATCGACGATCACAGACCGCTCCACGCAGCCCCG
CGTGTCTGCATAAGTCACCGATGCCACAGGTGGATCGACGGGACGAGCCAGGGCCGGAACAGGCT
CCGGATCCCCCGAGGGCGACCCACCGCATCGAGGTGGACCGGTGCAGACGTCAAACGCGGGGAGT
GGCTGGGTGGTGACTGAGTGGACGTCTTTCACGGTGGTTCGTTCGGTGGTCGGTGGTCTGGTTCG
GGTGGACCTGGCATCCGATCTCCTCTGTCTGATGTATTTTTGTCGGGGAGGTGCCCAAGCCCACC
GCTATCTACGCTATTGGTTGCTGGTCATTTTAGCTTTCGTCGATCCCTCTAACCCCGAAAAATAT
AGGCTTCCAAGCAGGCCGCGAGCTTAACCTAAAGGGAGACGCTCCCGGGTGCCTACGGTGCCAAC
CAGCGTGCTTGTGACCTGAAACTTTGGGTGGAACGCCTCGGCAAC
Found at i:88786 original size:23 final size:23
Alignment explanation
Indices: 88760--88827 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
88750 GCGTGTAAGG
*
88760 CGGTTCGAACTGGTGGGGTAGTA
1 CGGTTCGAACTGGTGGAGTAGTA
* *
88783 CGGTTTGAACTGGTGGAGTAGGA
1 CGGTTCGAACTGGTGGAGTAGTA
* *
88806 CGG-TCAAACTGGGTGGTGTAGT
1 CGGTTCGAACT-GGTGGAGTAGT
88828 GAGACGGCTC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
22 5 0.14
23 32 0.86
ACGTcount: A:0.19, C:0.12, G:0.43, T:0.26
Consensus pattern (23 bp):
CGGTTCGAACTGGTGGAGTAGTA
Left flanking sequence: Indices 88260 -- 88759
CTGGGTGGTGACTGAGTGGACGTCTTTCACGGTGGTTCGTTCGGTGGTCGGTGGTCTGGTTCGGG
TGGACCTGGCATCCGATCTCCTCTGTCTGATGTATTTTTGTCGGGGAGGTGCCCAAGCCCACCGC
TATCTACGCTATTGGTTGCTGGTCATTTTAGCTTTCGTCGATCCCTCTAACCCCGAAAAATATAG
GCTTCCAAGCAGGCCGCGAGCTTAACCTAAAGGGAGACGCTCCCGGGTGCCTACGGTGCCAACCA
GCGTGCTTGTGACCTGAAACTTTGGGTGGAACGCCTCGGCAACAATGAAACGATGTGTCACTTAC
AAGTCCGGTGTGCACATGCCAGCCGGATTTAAAAGGGTCTAAGATAGCGATTTAGAGTTTGACTG
GATGGCAGCCCACCGAGGTTCATAACCGGACTCGTAACGCGCTGCGGTGGAAACCGCGGCCCAGC
GGGAGCTGCTGCGGTTGTGACGGGGTTCGAACTGGGCGTGTAAGG
Right flanking sequence: Indices 88828 -- 89327
GAGACGGCTCTCGTCTTTTCATAGAAGCTCCAAACCAAACTTGCTTTTTCTGCCTCGCTCCGGGT
CGTCTCGTCTCGTTTCGTCTCGTTTCGTGCCGTTGTGAGCTGGATCAGAGTATTTTACCACAGTA
TTTTCACCGGAAAGCCTAAACCTGTGCGTATTCCAGGTGTGGAAGCGGACACGGAAAATAATGAA
CGCAGGGAGGATGTGAGGGAAGCTTAAAGAGTGGGGGTATTTCGGTCCTCGGTTCTTCTCGCTAT
CCATTTCCGAACGGCCTGGTGGCCTCGGTCGGTTTGGGCGCGGAGAAGCACGGGGGTAGCACGCG
AAGAAGCACGCGGAGAAGCACGAGGGATGCATGCATGCGGGCAGCTGTGGGACGTGGGGTTAGTC
TTGGTGAAACCGTCTAGGTGTTCTTTACGTATGAATATTGTTGGTTCTATTAGGGTGAAAAATTT
GAGGGGTCAAAGTGGGGGTGGTCGTGGAGGCCGAGGGTGTGAGCG
Found at i:89162 original size:12 final size:12
Alignment explanation
Indices: 89145--89174 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
89135 GCACGGGGGT
89145 AGCACGCGAAGA
1 AGCACGCGAAGA
*
89157 AGCACGCGGAGA
1 AGCACGCGAAGA
89169 AGCACG
1 AGCACG
89175 AGGGATGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.27, G:0.37, T:0.00
Consensus pattern (12 bp):
AGCACGCGAAGA
Left flanking sequence: Indices 88645 -- 89144
GACTGGATGGCAGCCCACCGAGGTTCATAACCGGACTCGTAACGCGCTGCGGTGGAAACCGCGGC
CCAGCGGGAGCTGCTGCGGTTGTGACGGGGTTCGAACTGGGCGTGTAAGGCGGTTCGAACTGGTG
GGGTAGTACGGTTTGAACTGGTGGAGTAGGACGGTCAAACTGGGTGGTGTAGTGAGACGGCTCTC
GTCTTTTCATAGAAGCTCCAAACCAAACTTGCTTTTTCTGCCTCGCTCCGGGTCGTCTCGTCTCG
TTTCGTCTCGTTTCGTGCCGTTGTGAGCTGGATCAGAGTATTTTACCACAGTATTTTCACCGGAA
AGCCTAAACCTGTGCGTATTCCAGGTGTGGAAGCGGACACGGAAAATAATGAACGCAGGGAGGAT
GTGAGGGAAGCTTAAAGAGTGGGGGTATTTCGGTCCTCGGTTCTTCTCGCTATCCATTTCCGAAC
GGCCTGGTGGCCTCGGTCGGTTTGGGCGCGGAGAAGCACGGGGGT
Right flanking sequence: Indices 89175 -- 89674
AGGGATGCATGCATGCGGGCAGCTGTGGGACGTGGGGTTAGTCTTGGTGAAACCGTCTAGGTGTT
CTTTACGTATGAATATTGTTGGTTCTATTAGGGTGAAAAATTTGAGGGGTCAAAGTGGGGGTGGT
CGTGGAGGCCGAGGGTGTGAGCGTGGCATTGGCCATGGTGGATACCGTGGTAGAGACCTGGTAGA
GACCTGGGTGAACGCCACCGCAGGCATTGCTACCCCGTTGGCTGCTTTGTTGTTGTCTCGGAATT
AATCTTCCGGGGTCCATAACTACGCACGTCTCAACCCCGCTGTTGCATTTATTGGGTAGAGAATA
CTCGGGGTTTGCCCGTGCCCAGGTCTATCTGAATCTTCACTTGGAATTGGACGGATTCACTTCTC
CATCGGTGGGAATAGCAGTACGACTGCATGGTCAAATTCCATCTCATCCCCCATCCTTGGGGGGA
TCATAACACCTGGGAGTTTTCGCTGATAGCCTCCACGTCCCAGTT
Found at i:89368 original size:11 final size:11
Alignment explanation
Indices: 89352--89376 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
89342 GTGGATACCG
89352 TGGTAGAGACC
1 TGGTAGAGACC
89363 TGGTAGAGACC
1 TGGTAGAGACC
89374 TGG
1 TGG
89377 GTGAACGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.16, G:0.40, T:0.20
Consensus pattern (11 bp):
TGGTAGAGACC
Left flanking sequence: Indices 88852 -- 89351
AAGCTCCAAACCAAACTTGCTTTTTCTGCCTCGCTCCGGGTCGTCTCGTCTCGTTTCGTCTCGTT
TCGTGCCGTTGTGAGCTGGATCAGAGTATTTTACCACAGTATTTTCACCGGAAAGCCTAAACCTG
TGCGTATTCCAGGTGTGGAAGCGGACACGGAAAATAATGAACGCAGGGAGGATGTGAGGGAAGCT
TAAAGAGTGGGGGTATTTCGGTCCTCGGTTCTTCTCGCTATCCATTTCCGAACGGCCTGGTGGCC
TCGGTCGGTTTGGGCGCGGAGAAGCACGGGGGTAGCACGCGAAGAAGCACGCGGAGAAGCACGAG
GGATGCATGCATGCGGGCAGCTGTGGGACGTGGGGTTAGTCTTGGTGAAACCGTCTAGGTGTTCT
TTACGTATGAATATTGTTGGTTCTATTAGGGTGAAAAATTTGAGGGGTCAAAGTGGGGGTGGTCG
TGGAGGCCGAGGGTGTGAGCGTGGCATTGGCCATGGTGGATACCG
Right flanking sequence: Indices 89377 -- 89876
GTGAACGCCACCGCAGGCATTGCTACCCCGTTGGCTGCTTTGTTGTTGTCTCGGAATTAATCTTC
CGGGGTCCATAACTACGCACGTCTCAACCCCGCTGTTGCATTTATTGGGTAGAGAATACTCGGGG
TTTGCCCGTGCCCAGGTCTATCTGAATCTTCACTTGGAATTGGACGGATTCACTTCTCCATCGGT
GGGAATAGCAGTACGACTGCATGGTCAAATTCCATCTCATCCCCCATCCTTGGGGGGATCATAAC
ACCTGGGAGTTTTCGCTGATAGCCTCCACGTCCCAGTTGGGACACCCGAATCCATCTATCACCCC
CACTCGCTTTCGTTCCAATCACCTGCAGTCTTCAGCTGATAGATCGGTCAGCGGTCAAGGGGTCT
GGAAAAGAAATGAGTCGTGATGCCTTTGGGCTCTCTACACATCGCTCTACACGCTCTGAAAGCTT
TACTCAATGTCACTATTTTCTATTGTACGGTCTATCCCGGTAAGC
Found at i:90443 original size:18 final size:18
Alignment explanation
Indices: 90420--90460 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
90410 ATCTCAGTTT
*
90420 GAACGACAGAGTCACCGG
1 GAACGACAGAGTCACCAG
90438 GAACGACAGAGTCACCAG
1 GAACGACAGAGTCACCAG
90456 GAACG
1 GAACG
90461 CCTTCACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.27, G:0.32, T:0.05
Consensus pattern (18 bp):
GAACGACAGAGTCACCAG
Left flanking sequence: Indices 89920 -- 90419
GGGAACTATACCCAGATCAGCAAACATGAATTGCGAAAATTCAGTGATCTACCATCCCCGTTCAG
CTTCAAACCTATCTTTTTTAGCCTCGTAATCTTCACTGATCAATTTCTCTTCCCTCTAGGGTATA
CTACTTGTCGTCTTATTCTCATGGAATACATAGCATAACATCTAATCGTGAGCTAACCGAAATTG
GAAGTGTCTACATCAAAGTAGAAGTATGGCCACAAGGATAACAAATCCAGAGAGCCCAGGAAGAC
TGGCTCTGCCATCAACTTCCACCGTGGGTGCCTCGACAGCTCCTGCATCTATCGAACCGTCCGGG
TAGACACCACTGTCGTCTTTGGTGGTGACACCGGGTGCTGCCTGTTCACCTTCATTCCCGTTCTC
GTCTCCAAACTCGTCATTGGGAGCCTCAACAACCACCGTGCTTGTTCGTGTAACTGTAGAGACCT
CCCCGTCTTCACCAGTAGTCTCCTCAACCACCGTGATCTCAGTTT
Right flanking sequence: Indices 90461 -- 90960
CCTTCACCAGCGTCCAACGTTGTCGTGGAGAGTATTCCATCCCCAGAGACCACCACCAAGCCGAC
ACCTTGTTCGTCTGTGGTGACTACCACCACTCCGCTTTCAGTATGCACGCTGCCTTGCTCGTCTG
TGGTGGTCCACACCGTCGGGAAGGTAGTGCAATCACGGCAGTCGTCGTCTGCTGGCACCCATTTC
GACGTTGAGGTGGTGAGTTGGCCTTGTTCGTTTGTGGTCACAATAACCACCCCGGAGTCCGTCAC
TACGGAGCCCTCTTCGTCGGTGGTCCAGGTGGTGGTTATCTCCGTACACTCTGGGCACTCGGGGT
CAGTGGGTCGGGAGAACGCTGACGAAAAGGTCACTGTTTCCCCTCTGTCATTTGTGGTGACTATT
ACGACTCCAGACTCGGTAACAACGGCTCCTTCTTCGCCAGTAGTGGTCCAAGTCGAGGTGAACCG
GGTACACTCCGGACAGTCGGGGTCTGGGGGTTGCGGAAACAACGA
Found at i:91797 original size:144 final size:144
Alignment explanation
Indices: 91622--92856 Score: 1267
Period size: 144 Copynumber: 8.6 Consensus size: 144
91612 AGCTGTACTT
* * *
91622 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTGGTACATTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * *
91687 GAATAAAGACGTGGTAGTCGATAATTGGCCTTGCTCGTCAGTGGTAACGACAACTACACCAGAAT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTGCTCATCAGTGGTAACGACAACTACACCAGAAT
91752 CCGTTGCGGTGGAG
131 CCGTTGCGGTGGAG
* * * * * *
91766 CCATCTTCATCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * * * ** *
91831 GAATAAAGACGTAGTAGTTGATAATTGGCCTTGGTCATCAGTGGTGACTATGACTACACCGGAAT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTGCTCATCAGTGGTAACGACAACTACACCAGAAT
91896 CCGTTGCGGTGGAG
131 CCGTTGCGGTGGAG
* * *
91910 CCATCTTCATCCGTCGTATCCCAAGTGGTCGT-AAATGTAGTACATTCTTCACAGGTTGGACGTG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAA-GTTGTACATTCTTCACAGGTTGGACGTG
* *
91974 GGAACAACGACGTGGTGGTTGACAACTGGCCTT-CTTCATCAGTGGTAACGACAACTACACCAGA
65 GGAACAACGACGTGGTGGTTGATAATTGGCCTTGC-TCATCAGTGGTAACGACAACTACACCAGA
*
92038 ATCTGTTGCGGTGGAG
129 ATCCGTTGCGGTGGAG
* * * * * * * * *
92054 CCATCTTCATCTGTAGTATCCCACGAAGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
** * * * * **
92119 GAACAACGACGTGGTGGTTG-TCAATTGGCCTCCCTCATCAGTTGTCACAATAA-TGATGCCAGA
66 GAACAACGACGTGGTGGTTGAT-AATTGGCCTTGCTCATCAGTGGTAACGACAACT-ACACCAGA
* *
92182 GTCTGTTGCGGTGGAG
129 ATCCGTTGCGGTGGAG
* * * * * * * * * * * *
92198 CCATCGTCGTCAGTGGTAGCCCAAGTTGATGTGAAAGTTGTGCACTCTTCACAGGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * * ** * *
92263 AAACAACGATGTCGTGGTTGACAATTGGCCTTGCTCATCAGTGGTTACTATGACTACGCCGGAAT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTGCTCATCAGTGGTAACGACAACTACACCAGAAT
92328 CCGTTGCGGTGGAG
131 CCGTTGCGGTGGAG
* * * * * *
92342 CCATCTTCATCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * *
92407 GAATAAAGACGTGGTAGTCGATAATTGGCCTTGCTCGTCAGTGGTAACGACAACTACACCAGAAT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTGCTCATCAGTGGTAACGACAACTACACCAGAAT
92472 CCGTTGCGGTGGAG
131 CCGTTGCGGTGGAG
* * * *
92486 CCATCTTCATCCGTCGTATCCCAAGTGGTCGT-AAATGTAGTACATTCTTCACAGGTTTGACGTG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAA-GTTGTACATTCTTCACAGGTTGGACGTG
* * * *
92550 GGAACAACGACGTGGTGGTTGATAATTGGCCTT-CTTCATCGGTGGTGACGACAACTACTCCTGA
65 GGAACAACGACGTGGTGGTTGATAATTGGCCTTGC-TCATCAGTGGTAACGACAACTACACCAGA
* * * * ****
92614 GTCGGTAGCTGTACTT
129 ATCCGTTGCGGTGGAG
* * *
92630 CCATCTTCATCCGTCGTATCCCAAGTGGTCGTGTAAGTTGTACATTCTTCACAGGTTGGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * ** * * *
92695 GAACAACGAAGTTGTGGTTGATAATTGGCCTTGTTCATCAGTGGTGACTATGACTACTCCTGAGT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTGCTCATCAGTGGTAACGACAACTACACCAGAAT
* * *
92760 CGGTGGCCGTGGAG
131 CCGTTGCGGTGGAG
* * * * * * *
92774 CCATCTTCATCCGTTGTATCCCAAGAAGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
* *
92839 GAACAACGATGTAGTGGT
66 GAACAACGACGTGGTGGT
92857 CGTCAACTGA
Statistics
Matches: 910, Mismatches: 169, Indels: 24
0.83 0.15 0.02
Matches are distributed among these distances:
143 6 0.01
144 898 0.99
145 6 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (144 bp):
CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGACGTGG
GAACAACGACGTGGTGGTTGATAATTGGCCTTGCTCATCAGTGGTAACGACAACTACACCAGAAT
CCGTTGCGGTGGAG
Left flanking sequence: Indices 91122 -- 91621
AAGGAGCCCCGTTTTCGTCGGTGGTTACTATGATTACTCCAGAGTCAGTCGTGGTACGGCCGTCT
TCATCGGTTGTGCCCCACGTCGAAGTGAACGTCGTACACTCTGGGCACTCGGCATCGGTGGGTCG
TGGAAAGAGCGACGTAGACGTCGACAATTGGCCCTCGTCGTCGGTGGTTACTATGATGACCCCAG
AATCAGTCGCCGTACTGCCGTCTTCGTCCGTAGTCGTCCACGTTGAGGTATACGACAGGCAATCC
TCACAAGTCGGGCGGGGGAACAACGACGTGGTGGTGGTTAACTGCCCATCGTCGTCCGTGGTTAC
AACGATGACACCAGAGTCGGTTTCAGTGCTACCGTCCTCGTCCGTGGTGACCCAGGTAGAGGTGA
AAGACGTACACTCCGCACATGTGGGGCGTGGATACACCGATGTCGTGGTAGTCAACTGACCGTCC
GGGTCTGTGGTGACTATGACTACTCCTGAGTCGGTAGCTGTACTT
Right flanking sequence: Indices 92857 -- 93356
CGTCAACTGAGCTTCTTCGTCAGTTGTCACAATAATGATGCCAGAGTCTGTTGCGGTGGAGCCAT
CGTCGTCAGTGGTAGCCCAAGTTGACGTGAAAGTAGTGCACTCTTCACATGTGGGCCGAGGGAAC
AACGACGTGGTGGTTGTCAATTCTCCGATTTCCGTGGTAGTAACTATGATGACGCCAGAGTCCGT
TGCGGTAGAGCCATCTTCATCAATGGTAGTCCAAGTTGACGTGAAAGATGTACACTCGTCGCAAG
GTGGGGGAACCTCCAGCGGGACTGGCGGAAGTGGTGGACAATCCCCACAATTCATCGCTAACGCA
GCTTCATCTGGCACGGATCCCTCGTATACGAGTGCATTGATCATACGTCCCCCGCCCATTTTTAC
TTCCCATTCTCCATACAGAAACAAGGAAAGGTCGTAACCGGGCCCAATATCAAAAACTCCCGCAT
AGGGACGATCATAATAATTCCACGTAATACTCAAGGTTGATCCCG
Found at i:92438 original size:432 final size:431
Alignment explanation
Indices: 91622--93008 Score: 1460
Period size: 432 Copynumber: 3.2 Consensus size: 431
91612 AGCTGTACTT
* * * * * * ** * *
91622 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTGGTACATTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCAGTAGTATCCCAAGTAGTCGTGAAAGTAGTACATTCTTCACATGTGGGCCGAGG
* * * * ** * * * * *
91687 GAATAAAGACGTGGTAGTCGAT-AATTGGCCTTGCTCGTCAGTGGTAACGACAACTACACCAGAA
66 GAACAACGACGTGGTGGTTG-TCAATTGGCCTCCCTCATCAGTGGTCACAACAACTACTCCAGAG
* * * *
91751 TCCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTC
130 TCCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCAAG-TGATGTGAAAGTTGTACACTCTTC
* * * * * *
91816 ACAGGTTTGACGTGGGAATAAAGACGTAGTAGTTGATAATTGGCCTTGGTCATCAGTGGTGACTA
194 ACAGGTTGGACGTGGGAACAACGAAGTAGTGGTTGATAATTGGCCTTGCTCATCAGTGGTGACTA
** * * *
91881 TGACTACACCGGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTCGTAAAT
259 TGACTACACCGGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGAAGTTGTGAAC
* * *
91946 GTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTGACAACTGGCCTTCTTC
324 GTTGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTCGATAACTGGCCTTCTTC
*
92011 ATCAGTGGTAACGACAACTACACCAGAATCTGTTGCGGTGGAG
389 GTCAGTGGTAACGACAACTACACCAGAATCTGTTGCGGTGGAG
* * * * * *
92054 CCATCTTCATCTGTAGTATCCCACGAAGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCAGTAGTATCCCAAGTAGTCGTGAAAGTAGTACATTCTTCACATGTGGGCCGAGG
* *
92119 GAACAACGACGTGGTGGTTGTCAATTGGCCTCCCTCATCAGTTGTCACAATAA-TGA-TGCCAGA
66 GAACAACGACGTGGTGGTTGTCAATTGGCCTCCCTCATCAGTGGTCACAACAACT-ACT-CCAGA
* * * * * *
92182 GTCTGTTGCGGTGGAGCCATCGTCGTCAGTGGTAGCCCAAGTTGATGTGAAAGTTGTGCACTCTT
129 GTCCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCAAG-TGATGTGAAAGTTGTACACTCTT
* * * * * * * *
92247 CACAGGTGGGCCGAGGAAACAACGATGTCGTGGTTGACAATTGGCCTTGCTCATCAGTGGTTACT
193 CACAGGTTGGACGTGGGAACAACGAAGTAGTGGTTGATAATTGGCCTTGCTCATCAGTGGTGACT
* * *
92312 ATGACTACGCCGGAATCCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCACGAAGTTGTGAA
258 ATGACTACACCGGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGAAGTTGTGAA
* * * * * *
92377 CGTTGTACACTCTTCACAGGTTTGACGTGGGAATAAAGACGTGGTAGTCGATAATTGGCCTTGC-
323 CGTTGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTCGATAACTGGCCTT-CT
*
92441 TCGTCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAG
387 TCGTCAGTGGTAACGACAACTACACCAGAATCTGTTGCGGTGGAG
* * * * ** * *
92486 CCATCTTCATCCGTCGTATCCCAAGTGGTCGT-AAATGTAGTACATTCTTCACAGGTTTGACGTG
1 CCATCTTCATCAGTAGTATCCCAAGTAGTCGTGAAA-GTAGTACATTCTTCACATGTGGGCCGAG
* * * * * *
92550 GGAACAACGACGTGGTGGTTGAT-AATTGGCCTTCTTCATCGGTGGTGACGACAACTACTCCTGA
65 GGAACAACGACGTGGTGGTTG-TCAATTGGCCTCCCTCATCAGTGGTCACAACAACTACTCCAGA
* * * **** * * * *
92614 GTCGGTAGCTGTACTTCCATCTTCATCCGTCGTATCCCAAGTGGTCGTGTAAGTTGTACATTCTT
129 GTCCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCAAGTGAT-GTGAAAGTTGTACACTCTT
* *
92679 CACAGGTTGGACGTGGGAACAACGAAGTTGTGGTTGATAATTGGCCTTGTTCATCAGTGGTGACT
193 CACAGGTTGGACGTGGGAACAACGAAGTAGTGGTTGATAATTGGCCTTGCTCATCAGTGGTGACT
* * * * * * *
92744 ATGACTACTCCTGAGTCGGTGGCCGTGGAGCCATCTTCATCCGTTGTATCCCAAGAAGTTGTGAA
258 ATGACTACACCGGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGAAGTTGTGAA
* * * * * *
92809 CGTTGTACATTCTTCACATGTGGGCCGAGGGAACAACGATGTAGTGGTCG-TCAACTGAG-CTTC
323 CGTTGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTCGAT-AACTG-GCCTTC
* * * * ** *
92872 TTCGTCAGTTGTCACAATAA-TGATGCCAGAGTCTGTTGCGGTGGAG
386 TTCGTCAGTGGTAACGACAACT-ACACCAGAATCTGTTGCGGTGGAG
* * * * * * * *
92918 CCATCGTCGTCAGTGGTAGCCCAAGTTGACGTGAAAGTAGTGCACTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCAGTAGTATCCCAAGTAGTCGTGAAAGTAGTACATTCTTCACATGTGGGCCGAGG
92983 GAACAACGACGTGGTGGTTGTCAATT
66 GAACAACGACGTGGTGGTTGTCAATT
93009 CTCCGATTTC
Statistics
Matches: 783, Mismatches: 157, Indels: 30
0.81 0.16 0.03
Matches are distributed among these distances:
431 11 0.01
432 764 0.98
433 8 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (431 bp):
CCATCTTCATCAGTAGTATCCCAAGTAGTCGTGAAAGTAGTACATTCTTCACATGTGGGCCGAGG
GAACAACGACGTGGTGGTTGTCAATTGGCCTCCCTCATCAGTGGTCACAACAACTACTCCAGAGT
CCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCAAGTGATGTGAAAGTTGTACACTCTTCAC
AGGTTGGACGTGGGAACAACGAAGTAGTGGTTGATAATTGGCCTTGCTCATCAGTGGTGACTATG
ACTACACCGGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGAAGTTGTGAACGT
TGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTCGATAACTGGCCTTCTTCGT
CAGTGGTAACGACAACTACACCAGAATCTGTTGCGGTGGAG
Left flanking sequence: Indices 91122 -- 91621
AAGGAGCCCCGTTTTCGTCGGTGGTTACTATGATTACTCCAGAGTCAGTCGTGGTACGGCCGTCT
TCATCGGTTGTGCCCCACGTCGAAGTGAACGTCGTACACTCTGGGCACTCGGCATCGGTGGGTCG
TGGAAAGAGCGACGTAGACGTCGACAATTGGCCCTCGTCGTCGGTGGTTACTATGATGACCCCAG
AATCAGTCGCCGTACTGCCGTCTTCGTCCGTAGTCGTCCACGTTGAGGTATACGACAGGCAATCC
TCACAAGTCGGGCGGGGGAACAACGACGTGGTGGTGGTTAACTGCCCATCGTCGTCCGTGGTTAC
AACGATGACACCAGAGTCGGTTTCAGTGCTACCGTCCTCGTCCGTGGTGACCCAGGTAGAGGTGA
AAGACGTACACTCCGCACATGTGGGGCGTGGATACACCGATGTCGTGGTAGTCAACTGACCGTCC
GGGTCTGTGGTGACTATGACTACTCCTGAGTCGGTAGCTGTACTT
Right flanking sequence: Indices 93009 -- 93508
CTCCGATTTCCGTGGTAGTAACTATGATGACGCCAGAGTCCGTTGCGGTAGAGCCATCTTCATCA
ATGGTAGTCCAAGTTGACGTGAAAGATGTACACTCGTCGCAAGGTGGGGGAACCTCCAGCGGGAC
TGGCGGAAGTGGTGGACAATCCCCACAATTCATCGCTAACGCAGCTTCATCTGGCACGGATCCCT
CGTATACGAGTGCATTGATCATACGTCCCCCGCCCATTTTTACTTCCCATTCTCCATACAGAAAC
AAGGAAAGGTCGTAACCGGGCCCAATATCAAAAACTCCCGCATAGGGACGATCATAATAATTCCA
CGTAATACTCAAGGTTGATCCCGCGTAGCTAAAGTCTTCAATTTCCCCCTCTGTAGCGAATGCCA
TGCCTTGGCCAAAGCCTCGGATGACAATCTCGCCAGGTTGGAAGTACTCTAACAAAATCGCGCCC
GTCGAAGCAACGTCAAATTGGATGGTGTGCTCAGAGTCCTCCTCA
Found at i:92880 original size:144 final size:144
Alignment explanation
Indices: 91622--93002 Score: 1245
Period size: 144 Copynumber: 9.6 Consensus size: 144
91612 AGCTGTACTT
* * * *
91622 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTGGTACATTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * * * *
91687 GAATAAAGACGTGGTAGTCGATAATTGGCCTTGC-TCGTCAGTGGTAACGACAACTACACCAGAA
66 GAACAACGACGTGGTGGTTGATAATTGGCCTT-CTTCATCAGTGGTGACGATAACTACTCCAGAA
91751 TCCGTTGCGGTGGAG
130 TCCGTTGCGGTGGAG
* * * * *
91766 CCATCTTCATCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * ** * * * *
91831 GAATAAAGACGTAGTAGTTGATAATTGGCCTTGGTCATCAGTGGTGACTATGACTACACCGGAAT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTCTTCATCAGTGGTGACGATAACTACTCCAGAAT
91896 CCGTTGCGGTGGAG
131 CCGTTGCGGTGGAG
* * * * *
91910 CCATCTTCATCCGTCGTATCCCAAGTGGTCGTAAATGTAGTACATTCTTCACAGGTTGGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * *
91975 GAACAACGACGTGGTGGTTGACAACTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAAT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTCTTCATCAGTGGTGACGATAACTACTCCAGAAT
*
92040 CTGTTGCGGTGGAG
131 CCGTTGCGGTGGAG
* * * * * * * *
92054 CCATCTTCATCTGTAGTATCCCACGAAGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * *
92119 GAACAACGACGTGGTGGTTG-TCAATTGGCCTCCCTCATCAGTTGTCACAATAA-TGA-TGCCAG
66 GAACAACGACGTGGTGGTTGAT-AATTGGCCTTCTTCATCAGTGGTGACGATAACT-ACT-CCAG
* *
92181 AGTCTGTTGCGGTGGAG
128 AATCCGTTGCGGTGGAG
* * * * * * * * * * * * *
92198 CCATCGTCGTCAGTGGTAGCCCAAGTTGATGTGAAAGTTGTGCACTCTTCACAGGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * * * * *
92263 AAACAACGATGTCGTGGTTGACAATTGGCCTTGC-TCATCAGTGGTTACTATGACTACGCCGGAA
66 GAACAACGACGTGGTGGTTGATAATTGGCCTT-CTTCATCAGTGGTGACGATAACTACTCCAGAA
92327 TCCGTTGCGGTGGAG
130 TCCGTTGCGGTGGAG
* * * * *
92342 CCATCTTCATCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * * * *
92407 GAATAAAGACGTGGTAGTCGATAATTGGCCTTGC-TCGTCAGTGGTAACGACAACTACACCAGAA
66 GAACAACGACGTGGTGGTTGATAATTGGCCTT-CTTCATCAGTGGTGACGATAACTACTCCAGAA
92471 TCCGTTGCGGTGGAG
130 TCCGTTGCGGTGGAG
* * * * * *
92486 CCATCTTCATCCGTCGTATCCCAAGTGGTCGTAAATGTAGTACATTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * *
92551 GAACAACGACGTGGTGGTTGATAATTGGCCTTCTTCATCGGTGGTGACGACAACTACTCCTGAGT
66 GAACAACGACGTGGTGGTTGATAATTGGCCTTCTTCATCAGTGGTGACGATAACTACTCCAGAAT
* * * ****
92616 CGGTAGCTGTACTT
131 CCGTTGCGGTGGAG
* *
92630 CCATCTTCATCCGTCGTATCCCAAGTGGTCGTGTAA-GTTGTACATTCTTCACAGGTTGGACGTG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTG-AACGTTGTACATTCTTCACAGGTTGGACGTG
* * * * * * *
92694 GGAACAACGAAGTTGTGGTTGATAATTGGCCTTGTTCATCAGTGGTGACTATGACTACTCCTGAG
65 GGAACAACGACGTGGTGGTTGATAATTGGCCTTCTTCATCAGTGGTGACGATAACTACTCCAGAA
* * *
92759 TCGGTGGCCGTGGAG
130 TCCGTTGCGGTGGAG
* * * * * *
92774 CCATCTTCATCCGTTGTATCCCAAGAAGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
* * * * * * * *
92839 GAACAACGATGTAGTGGTCG-TCAACTGAG-CTTCTTCGTCAGTTGTCACAATAA-TGA-TGCCA
66 GAACAACGACGTGGTGGTTGAT-AATTG-GCCTTCTTCATCAGTGGTGACGATAACT-ACT-CCA
* *
92900 GAGTCTGTTGCGGTGGAG
127 GAATCCGTTGCGGTGGAG
* * * * * * ** * * * * * * * *
92918 CCATCGTCGTCAGTGGTAGCCCAAGTTGACGTGAAAGTAGTGCACTCTTCACATGTGGGCCGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
92983 GAACAACGACGTGGTGGTTG
66 GAACAACGACGTGGTGGTTG
93003 TCAATTCTCC
Statistics
Matches: 1024, Mismatches: 198, Indels: 30
0.82 0.16 0.02
Matches are distributed among these distances:
143 7 0.01
144 1012 0.99
145 5 0.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (144 bp):
CCATCTTCATCCGTCGTATCCCAAGTAGTTGTGAACGTTGTACATTCTTCACAGGTTGGACGTGG
GAACAACGACGTGGTGGTTGATAATTGGCCTTCTTCATCAGTGGTGACGATAACTACTCCAGAAT
CCGTTGCGGTGGAG
Left flanking sequence: Indices 91122 -- 91621
AAGGAGCCCCGTTTTCGTCGGTGGTTACTATGATTACTCCAGAGTCAGTCGTGGTACGGCCGTCT
TCATCGGTTGTGCCCCACGTCGAAGTGAACGTCGTACACTCTGGGCACTCGGCATCGGTGGGTCG
TGGAAAGAGCGACGTAGACGTCGACAATTGGCCCTCGTCGTCGGTGGTTACTATGATGACCCCAG
AATCAGTCGCCGTACTGCCGTCTTCGTCCGTAGTCGTCCACGTTGAGGTATACGACAGGCAATCC
TCACAAGTCGGGCGGGGGAACAACGACGTGGTGGTGGTTAACTGCCCATCGTCGTCCGTGGTTAC
AACGATGACACCAGAGTCGGTTTCAGTGCTACCGTCCTCGTCCGTGGTGACCCAGGTAGAGGTGA
AAGACGTACACTCCGCACATGTGGGGCGTGGATACACCGATGTCGTGGTAGTCAACTGACCGTCC
GGGTCTGTGGTGACTATGACTACTCCTGAGTCGGTAGCTGTACTT
Right flanking sequence: Indices 93003 -- 93502
TCAATTCTCCGATTTCCGTGGTAGTAACTATGATGACGCCAGAGTCCGTTGCGGTAGAGCCATCT
TCATCAATGGTAGTCCAAGTTGACGTGAAAGATGTACACTCGTCGCAAGGTGGGGGAACCTCCAG
CGGGACTGGCGGAAGTGGTGGACAATCCCCACAATTCATCGCTAACGCAGCTTCATCTGGCACGG
ATCCCTCGTATACGAGTGCATTGATCATACGTCCCCCGCCCATTTTTACTTCCCATTCTCCATAC
AGAAACAAGGAAAGGTCGTAACCGGGCCCAATATCAAAAACTCCCGCATAGGGACGATCATAATA
ATTCCACGTAATACTCAAGGTTGATCCCGCGTAGCTAAAGTCTTCAATTTCCCCCTCTGTAGCGA
ATGCCATGCCTTGGCCAAAGCCTCGGATGACAATCTCGCCAGGTTGGAAGTACTCTAACAAAATC
GCGCCCGTCGAAGCAACGTCAAATTGGATGGTGTGCTCAGAGTCC
Found at i:92943 original size:288 final size:288
Alignment explanation
Indices: 91583--93002 Score: 1370
Period size: 288 Copynumber: 4.9 Consensus size: 288
91573 GTCCGGGTCT
* * * * ****
91583 GTGGTGACTATGACTACTCCTGAGTCGGTAGCTGTACTTCCATCTTCATCCGTCGTATCCCAAGT
1 GTGGTGACTATGACTACTCCAGAGTCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
* * * * * *
91648 GGTTGTGAAAGTGGTACATTCTTCACAGGTTTGACGTGGGAATAAAGACGTGGTAGTCGAT-AAT
66 GGTTGTGAAAGTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTG-TCAAT
*
91712 TGGCCTTGC-TCGTCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCAT
130 TGGCCTT-CTTCATCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCAT
* * *
91776 CAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGGGAATAAAGAC
194 CAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTGGACGTGGGAACAACGAC
* * *
91841 GTAGTAGTTGATAATTGGCCTTGGTCATCA
259 GTGGTGGTTGATAATTGGCCTTGCTCATCA
* * *
91871 GTGGTGACTATGACTACACCGGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
1 GTGGTGACTATGACTACTCCAGAGTCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
* * *
91936 GGTCGT-AAATGTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTGACAAC
66 GGTTGTGAAA-GTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTGTCAAT
*
92000 TGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAATCTGTTGCGGTGGAGCCATCTTCATC
130 TGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCATC
* * * * * * *
92065 TGTAGTATCCCACGAAGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGGGAACAACGACG
195 AGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTGGACGTGGGAACAACGACG
**
92130 TGGTGGTTG-TCAATTGGCCTCCCTCATCA
260 TGGTGGTTGAT-AATTGGCCTTGCTCATCA
* * * * * * * * * *
92159 GTTGTCACAAT-AATGA-TGCCAGAGTCTGTTGCGGTGGAGCCATCGTCGTCAGTGGTAGCCCAA
1 GTGGTGACTATGACT-ACT-CCAGAGTCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAA
* * * * * * * * * * * *
92222 GTTGATGTGAAAGTTGTGCACTCTTCACAGGTGGGCCGAGGAAACAACGATGTCGTGGTTGACAA
64 GTGGTTGTGAAAGTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTGTCAA
* * ** * *
92287 TTGGCCTTGC-TCATCAGTGGTTACTATGACTACGCCGGAATCCGTTGCGGTGGAGCCATCTTCA
129 TTGGCCTT-CTTCATCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCA
* * *
92351 TCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGGGAATAAAGA
193 TCAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTGGACGTGGGAACAACGA
* * *
92416 CGTGGTAGTCGATAATTGGCCTTGCTCGTCA
258 CGTGGTGGTTGATAATTGGCCTTGCTCATCA
* * ** * *
92447 GTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
1 GTGGTGACTATGACTACTCCAGAGTCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
* *
92512 GGTCGT-AAATGTAGTACATTCTTCACAGGTTTGACGTGGGAACAACGACGTGGTGGTTGAT-AA
66 GGTTGTGAAA-GTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTG-TCAA
* * * * * * * * ****
92575 TTGGCCTTCTTCATCGGTGGTGACGACAACTACTCCTGAGTCGGTAGCTGTACTTCCATCTTCAT
129 TTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCAT
* * ** * *
92640 CCGTCGTATCCCAAGTGGTCGTGTAA-GTTGTACATTCTTCACAGGTTGGACGTGGGAACAACGA
194 CAGTCGTATCCCACGAAGTTGTG-AACGTTGTACACTCTTCACAGGTTGGACGTGGGAACAACGA
* * *
92704 AGTTGTGGTTGATAATTGGCCTTGTTCATCA
258 CGTGGTGGTTGATAATTGGCCTTGCTCATCA
* * * * * *
92735 GTGGTGACTATGACTACTCCTGAGTCGGTGGCCGTGGAGCCATCTTCATCCGTTGTATCCCAAGA
1 GTGGTGACTATGACTACTCCAGAGTCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
* * * * * * * * * * *
92800 AGTTGTGAACGTTGTACATTCTTCACATGTGGGCCGAGGGAACAACGATGTAGTGGTCGTCAACT
66 GGTTGTGAAAGTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTGTCAATT
* * * * * ** * * * *
92865 GAG-CTTCTTCGTCAGTTGTCACAATAA-TGATGCCAGAGTCTGTTGCGGTGGAGCCATCGTCGT
131 G-GCCTTCTTCATCAGTGGTAACGACAACT-ACACCAGAATCCGTTGCGGTGGAGCCATCTTCAT
* * * ** ** * * * * * * *
92928 CAGTGGTAGCCCAAGTTGACGTGAAAGTAGTGCACTCTTCACATGTGGGCCGAGGGAACAACGAC
194 CAGTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTGGACGTGGGAACAACGAC
92993 GTGGTGGTTG
259 GTGGTGGTTG
93003 TCAATTCTCC
Statistics
Matches: 914, Mismatches: 198, Indels: 40
0.79 0.17 0.03
Matches are distributed among these distances:
287 15 0.02
288 887 0.97
289 12 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (288 bp):
GTGGTGACTATGACTACTCCAGAGTCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGT
GGTTGTGAAAGTAGTACATTCTTCACAGGTTGGACGTGGGAACAACGACGTGGTGGTTGTCAATT
GGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCATCA
GTCGTATCCCACGAAGTTGTGAACGTTGTACACTCTTCACAGGTTGGACGTGGGAACAACGACGT
GGTGGTTGATAATTGGCCTTGCTCATCA
Left flanking sequence: Indices 91083 -- 91582
CAGGCCCAGTGGGCCGAGGGAAGACTGAAGTGCTAGTAGAAGGAGCCCCGTTTTCGTCGGTGGTT
ACTATGATTACTCCAGAGTCAGTCGTGGTACGGCCGTCTTCATCGGTTGTGCCCCACGTCGAAGT
GAACGTCGTACACTCTGGGCACTCGGCATCGGTGGGTCGTGGAAAGAGCGACGTAGACGTCGACA
ATTGGCCCTCGTCGTCGGTGGTTACTATGATGACCCCAGAATCAGTCGCCGTACTGCCGTCTTCG
TCCGTAGTCGTCCACGTTGAGGTATACGACAGGCAATCCTCACAAGTCGGGCGGGGGAACAACGA
CGTGGTGGTGGTTAACTGCCCATCGTCGTCCGTGGTTACAACGATGACACCAGAGTCGGTTTCAG
TGCTACCGTCCTCGTCCGTGGTGACCCAGGTAGAGGTGAAAGACGTACACTCCGCACATGTGGGG
CGTGGATACACCGATGTCGTGGTAGTCAACTGACCGTCCGGGTCT
Right flanking sequence: Indices 93003 -- 93502
TCAATTCTCCGATTTCCGTGGTAGTAACTATGATGACGCCAGAGTCCGTTGCGGTAGAGCCATCT
TCATCAATGGTAGTCCAAGTTGACGTGAAAGATGTACACTCGTCGCAAGGTGGGGGAACCTCCAG
CGGGACTGGCGGAAGTGGTGGACAATCCCCACAATTCATCGCTAACGCAGCTTCATCTGGCACGG
ATCCCTCGTATACGAGTGCATTGATCATACGTCCCCCGCCCATTTTTACTTCCCATTCTCCATAC
AGAAACAAGGAAAGGTCGTAACCGGGCCCAATATCAAAAACTCCCGCATAGGGACGATCATAATA
ATTCCACGTAATACTCAAGGTTGATCCCGCGTAGCTAAAGTCTTCAATTTCCCCCTCTGTAGCGA
ATGCCATGCCTTGGCCAAAGCCTCGGATGACAATCTCGCCAGGTTGGAAGTACTCTAACAAAATC
GCGCCCGTCGAAGCAACGTCAAATTGGATGGTGTGCTCAGAGTCC
Found at i:93108 original size:144 final size:143
Alignment explanation
Indices: 92812--93108 Score: 355
Period size: 144 Copynumber: 2.1 Consensus size: 143
92802 TTGTGAACGT
* * * * *
92812 TGTACATTCTTCACATGTGGGCCGAGGGAACAACGATGTAGTGGTCGTCAACTGAGCTTCTTCGT
1 TGTACACTCTTCACATGTGGGCCGAGGGAACAACGACGTAGTGGTCGTCAACTCAGATTCTCCGT
* * * * * * *
92877 CAGTTGTCACAATAATGATGCCAGAGTCTGTTGCGGTGGAGCCATCGTCGTCAGTGGTAGCCCAA
66 CAGTAGTAACAATAATGACGCCAGAGTCCGTTGCGGTAGAGCCATCGTCATCAATGGTAGCCCAA
92942 GTTGACGTGAAAG
131 GTTGACGTGAAAG
* * * *
92955 TAGTGCACTCTTCACATGTGGGCCGAGGGAACAACGACGTGGTGGTTGTCAATTCTCCGATT-TC
1 T-GTACACTCTTCACATGTGGGCCGAGGGAACAACGACGTAGTGGTCGTCAA--CTCAGATTCTC
* * * * *
93019 CGT-GGTAGTAACTATGATGACGCCAGAGTCCGTTGCGGTAGAGCCATCTTCATCAATGGTAGTC
63 CGTCAGTAGTAACAATAATGACGCCAGAGTCCGTTGCGGTAGAGCCATCGTCATCAATGGTAGCC
93083 CAAGTTGACGTGAAAG
128 CAAGTTGACGTGAAAG
93099 ATGTACACTC
1 -TGTACACTC
93109 GTCGCAAGGT
Statistics
Matches: 128, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
143 1 0.01
144 117 0.91
145 5 0.04
146 5 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (143 bp):
TGTACACTCTTCACATGTGGGCCGAGGGAACAACGACGTAGTGGTCGTCAACTCAGATTCTCCGT
CAGTAGTAACAATAATGACGCCAGAGTCCGTTGCGGTAGAGCCATCGTCATCAATGGTAGCCCAA
GTTGACGTGAAAG
Left flanking sequence: Indices 92312 -- 92811
ATGACTACGCCGGAATCCGTTGCGGTGGAGCCATCTTCATCAGTCGTATCCCACGAAGTTGTGAA
CGTTGTACACTCTTCACAGGTTTGACGTGGGAATAAAGACGTGGTAGTCGATAATTGGCCTTGCT
CGTCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAGCCATCTTCATCCGTCGTATCC
CAAGTGGTCGTAAATGTAGTACATTCTTCACAGGTTTGACGTGGGAACAACGACGTGGTGGTTGA
TAATTGGCCTTCTTCATCGGTGGTGACGACAACTACTCCTGAGTCGGTAGCTGTACTTCCATCTT
CATCCGTCGTATCCCAAGTGGTCGTGTAAGTTGTACATTCTTCACAGGTTGGACGTGGGAACAAC
GAAGTTGTGGTTGATAATTGGCCTTGTTCATCAGTGGTGACTATGACTACTCCTGAGTCGGTGGC
CGTGGAGCCATCTTCATCCGTTGTATCCCAAGAAGTTGTGAACGT
Right flanking sequence: Indices 93109 -- 93608
GTCGCAAGGTGGGGGAACCTCCAGCGGGACTGGCGGAAGTGGTGGACAATCCCCACAATTCATCG
CTAACGCAGCTTCATCTGGCACGGATCCCTCGTATACGAGTGCATTGATCATACGTCCCCCGCCC
ATTTTTACTTCCCATTCTCCATACAGAAACAAGGAAAGGTCGTAACCGGGCCCAATATCAAAAAC
TCCCGCATAGGGACGATCATAATAATTCCACGTAATACTCAAGGTTGATCCCGCGTAGCTAAAGT
CTTCAATTTCCCCCTCTGTAGCGAATGCCATGCCTTGGCCAAAGCCTCGGATGACAATCTCGCCA
GGTTGGAAGTACTCTAACAAAATCGCGCCCGTCGAAGCAACGTCAAATTGGATGGTGTGCTCAGA
GTCCTCCTCAAATCTCCACAGGGCGTGTTGTGCAAGATGGAGGCACCCGGACCCAACAAATTTGC
CACGGACTTCCCGGTTCGTAGCACATATTTCGCCATTATTAATAA
Found at i:96670 original size:12 final size:12
Alignment explanation
Indices: 96653--96708 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
96643 GCATCATCCG
96653 CTCGTCGTCGTC
1 CTCGTCGTCGTC
96665 CTCGTCGTCGTC
1 CTCGTCGTCGTC
*
96677 GC-CAG-CCTCGTC
1 -CTC-GTCGTCGTC
*
96689 CACGTCGTCGTC
1 CTCGTCGTCGTC
*
96701 GTCGTCGT
1 CTCGTCGT
96709 AGCCAAACCC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
11 2 0.06
12 32 0.89
13 2 0.06
ACGTcount: A:0.04, C:0.41, G:0.27, T:0.29
Consensus pattern (12 bp):
CTCGTCGTCGTC
Left flanking sequence: Indices 96153 -- 96652
TGTGCGTTCATATGCACCTGTACTCGACATGAAAGCGCAAAATTACTTTCAACCAGTGACATTGA
AACATTGAGACCATAAAAAAATTCAAAAACCGCTTTCACGGGTGTAGAAAAATTCAAAAAAGCAA
GAAGAGGTCCAGCCATCAAAATCACTCAAAATTCATTTTGCCCCAGTGGTAGCTTCAGGTAAATA
ATATGTGACAGGTAGAACTATTTTTATCGATATTATCGATGCAGCCTACATCTGATACAGATGAC
GTATTTTTGCCAGCGTGGATAATATACGAAATTCGAGCGAATAATACTTGATTAATAGGACGTTT
TAAAAAATACCGTGCAGTGAAATGAATCCCATGTTTTGCAGGGTTCACGTTGGTGTTAGCAGTTG
GTTTCTGCCTCCTTTGCTTACGACTCCAATTAATGGGATAAACTAAATGCTTAGATAAGCCACGT
CTCGCGGGCCTCTTCCAACTCCTCGTTGATGCTGCGCATCATCCG
Right flanking sequence: Indices 96709 -- 97208
AGCCAAACCCTTCGCCCCCCCGGTTGACGTCCGGGCCCGGAGGCTGCATGGGTTTGATCGCCTCG
ACGGTGTGGGCGTTCACCTGGGGCGTGACGCTGGCGGACGGGGCCCGGTGGTAGAGCAAGATCTC
CATCTGGTGCTGCAACTGGCTGAGTCGCTCCACCAAGTCGTGGCAGTTGCGAATGCTAAACTTCT
TGCCGCGCTCGCGCTCGTTGAAGTAGGCGATGAGCTCGGTGACCACCTCCAAGAAGCCAAACTCC
TCGAGGTAGCGGGCCCGTTCCTCGGCCGGGGTGGCCACGCGGTCCTCGGGCGGCGGTGGTGCCGG
TCTCGGGCTGCTGGAGTGCACCAACGCCCGCGTGGGCAACGAGAACCGCGACAGCGCCAGGTACA
GCCCGTGGTCGCCCTGGCGCTGCACCGTCTCGAACAAGTTGTAGTCGGTGACGGCGGCGGTGGCG
CCCGGGTACGCCTGCTCCTTGGACACGAGGTTCATGAGAAGCCGC
Found at i:98355 original size:12 final size:12
Alignment explanation
Indices: 98338--98390 Score: 85
Period size: 12 Copynumber: 4.7 Consensus size: 12
98328 GCGTTGCCAG
98338 CACCAGAGTTTC
1 CACCAGAGTTTC
98350 CACCAGAGTTTC
1 CACCAGAGTTTC
98362 CA--A-AGTTTC
1 CACCAGAGTTTC
98371 CACCAGAGTTTC
1 CACCAGAGTTTC
98383 CACCAGAG
1 CACCAGAG
98391 ATACCAGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 8 0.21
10 1 0.03
11 1 0.03
12 28 0.74
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (12 bp):
CACCAGAGTTTC
Left flanking sequence: Indices 97838 -- 98337
GTAGCTGGGCCCGGCGTTGGCGGCGAAGATCACCGAGAGACTGGGCAAAAACGTGTCCAGGTTCA
GAATGAGCAGCTTGAACAGCAGGAACTCGGTGATGAAGTTGGCGAGCACCGCAAGCACCACCAGC
TGGTTGACCATCGCCGCGTGGGTGGGGGAGCCAAAGAACTTGAGGAGCGGGCGCTGGGTCTCAAA
CACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGCGCCCATGAACG
ACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGGAGAGGGAACGG
ATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGCATGGCTCCGAGCGAGGC
GGCCGAGCCGGGGGTGAGAGCGCCAGAAACAGTGGAACCAGAGCCAGAGTTGCCAGAAACGCCAG
TAGAACCAATAGAACTAGAGTTCCCAATGATGCCAGCGTTGCCAG
Right flanking sequence: Indices 98391 -- 98890
ATACCAGTATCAGGATTACCAGTAGCACCAGAGTTACTAGCACCAGAGTTACTAGCACCAGCATT
GCCAGCACCACCAGCATTACCACTCGCACTGGCACCACTCCCTCTCCCTCCGCCTCTCCCTCCAC
TCCCTCCACCACTCGCTCTCCTTCCACCACTCCCACCACCACTCCCTCCACTCGCTCTCCCCCCA
CCTCCCCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAACAAGTG
CAAGTCCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACAACCGGC
TGCGGTTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCACCCCCGCTAGGG
TCAAACTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACAAACGTGGCCGGCCCCAG
CGCCGCCACCGCCGCCCGCTTCACCAGGTACAACCCCTGGAGCAA
Found at i:98368 original size:21 final size:21
Alignment explanation
Indices: 98344--98384 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
98334 CCAGCACCAG
98344 AGTTTCCACCAGAGTTTCCAA
1 AGTTTCCACCAGAGTTTCCAA
98365 AGTTTCCACCAGAGTTTCCA
1 AGTTTCCACCAGAGTTTCCA
98385 CCAGAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (21 bp):
AGTTTCCACCAGAGTTTCCAA
Left flanking sequence: Indices 97844 -- 98343
GGGCCCGGCGTTGGCGGCGAAGATCACCGAGAGACTGGGCAAAAACGTGTCCAGGTTCAGAATGA
GCAGCTTGAACAGCAGGAACTCGGTGATGAAGTTGGCGAGCACCGCAAGCACCACCAGCTGGTTG
ACCATCGCCGCGTGGGTGGGGGAGCCAAAGAACTTGAGGAGCGGGCGCTGGGTCTCAAACACCTT
GAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGCGCCCATGAACGACGGGT
AGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGGAGAGGGAACGGATGAGG
TAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGCATGGCTCCGAGCGAGGCGGCCGA
GCCGGGGGTGAGAGCGCCAGAAACAGTGGAACCAGAGCCAGAGTTGCCAGAAACGCCAGTAGAAC
CAATAGAACTAGAGTTCCCAATGATGCCAGCGTTGCCAGCACCAG
Right flanking sequence: Indices 98385 -- 98884
CCAGAGATACCAGTATCAGGATTACCAGTAGCACCAGAGTTACTAGCACCAGAGTTACTAGCACC
AGCATTGCCAGCACCACCAGCATTACCACTCGCACTGGCACCACTCCCTCTCCCTCCGCCTCTCC
CTCCACTCCCTCCACCACTCGCTCTCCTTCCACCACTCCCACCACCACTCCCTCCACTCGCTCTC
CCCCCACCTCCCCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAA
CAAGTGCAAGTCCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACA
ACCGGCTGCGGTTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCACCCCCG
CTAGGGTCAAACTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACAAACGTGGCCGG
CCCCAGCGCCGCCACCGCCGCCCGCTTCACCAGGTACAACCCCTG
Found at i:98431 original size:15 final size:15
Alignment explanation
Indices: 98413--98451 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
98403 GGATTACCAG
98413 TAGCACCAGAGTTAC
1 TAGCACCAGAGTTAC
98428 TAGCACCAGAGTTAC
1 TAGCACCAGAGTTAC
98443 TAGCACCAG
1 TAGCACCAG
98452 CATTGCCAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (15 bp):
TAGCACCAGAGTTAC
Left flanking sequence: Indices 97913 -- 98412
CTTGAACAGCAGGAACTCGGTGATGAAGTTGGCGAGCACCGCAAGCACCACCAGCTGGTTGACCA
TCGCCGCGTGGGTGGGGGAGCCAAAGAACTTGAGGAGCGGGCGCTGGGTCTCAAACACCTTGAGG
AGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGCGCCCATGAACGACGGGTAGGC
GTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGGAGAGGGAACGGATGAGGTAGT
AGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGCATGGCTCCGAGCGAGGCGGCCGAGCCG
GGGGTGAGAGCGCCAGAAACAGTGGAACCAGAGCCAGAGTTGCCAGAAACGCCAGTAGAACCAAT
AGAACTAGAGTTCCCAATGATGCCAGCGTTGCCAGCACCAGAGTTTCCACCAGAGTTTCCAAAGT
TTCCACCAGAGTTTCCACCAGAGATACCAGTATCAGGATTACCAG
Right flanking sequence: Indices 98452 -- 98951
CATTGCCAGCACCACCAGCATTACCACTCGCACTGGCACCACTCCCTCTCCCTCCGCCTCTCCCT
CCACTCCCTCCACCACTCGCTCTCCTTCCACCACTCCCACCACCACTCCCTCCACTCGCTCTCCC
CCCACCTCCCCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAACA
AGTGCAAGTCCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACAAC
CGGCTGCGGTTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCACCCCCGCT
AGGGTCAAACTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACAAACGTGGCCGGCC
CCAGCGCCGCCACCGCCGCCCGCTTCACCAGGTACAACCCCTGGAGCAACGGGTCCGCCGCCAAC
CGCGCCAGCAACATCTCCACGAGCGCCAAGTCGAGGTTGGTCTGC
Found at i:98534 original size:39 final size:39
Alignment explanation
Indices: 98488--98587 Score: 112
Period size: 39 Copynumber: 2.6 Consensus size: 39
98478 CTCGCACTGG
* * * * *
98488 CACCACTCCCTCTCCCTCCGCCTCTCCCTCCACTCCCT-C
1 CACCACTCGCTCTCCCTCCACCACTCCCACCAC-CACTCC
*
98527 CACCACTCGCTCTCCTTCCACCACTCCCACCACCACTCC
1 CACCACTCGCTCTCCCTCCACCACTCCCACCACCACTCC
* *
98566 CTCCACTCGCTCTCCCCCCACC
1 CACCACTCGCTCTCCCTCCACC
98588 TCCCCCCCGC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 3 0.06
39 48 0.94
ACGTcount: A:0.12, C:0.65, G:0.03, T:0.20
Consensus pattern (39 bp):
CACCACTCGCTCTCCCTCCACCACTCCCACCACCACTCC
Left flanking sequence: Indices 97988 -- 98487
GGTGGGGGAGCCAAAGAACTTGAGGAGCGGGCGCTGGGTCTCAAACACCTTGAGGAGCTCCAAGA
GGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGCGCCCATGAACGACGGGTAGGCGTTGCACTCG
ACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGGAGAGGGAACGGATGAGGTAGTAGGCGTGGGT
GAAGAGCGGCAGGTCGACGATGCCGAGCATGGCTCCGAGCGAGGCGGCCGAGCCGGGGGTGAGAG
CGCCAGAAACAGTGGAACCAGAGCCAGAGTTGCCAGAAACGCCAGTAGAACCAATAGAACTAGAG
TTCCCAATGATGCCAGCGTTGCCAGCACCAGAGTTTCCACCAGAGTTTCCAAAGTTTCCACCAGA
GTTTCCACCAGAGATACCAGTATCAGGATTACCAGTAGCACCAGAGTTACTAGCACCAGAGTTAC
TAGCACCAGCATTGCCAGCACCACCAGCATTACCACTCGCACTGG
Right flanking sequence: Indices 98588 -- 99087
TCCCCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAACAAGTGCA
AGTCCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACAACCGGCTG
CGGTTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCACCCCCGCTAGGGTC
AAACTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACAAACGTGGCCGGCCCCAGCG
CCGCCACCGCCGCCCGCTTCACCAGGTACAACCCCTGGAGCAACGGGTCCGCCGCCAACCGCGCC
AGCAACATCTCCACGAGCGCCAAGTCGAGGTTGGTCTGCTTGAGCTGCACCGCCAACTGGGGCAG
CCGCTTGCAGCAGTCGCCGAGCACCCGGAACGGCAGCAAGAGGTGGCGGGGCACCGGGTGCACCA
GCCGCATGAGGGTGACGAGCGTGGGGAACAACGGCTCCACCTCGG
Found at i:99419 original size:12 final size:12
Alignment explanation
Indices: 99404--99433 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
99394 AGGAGGAAGA
99404 GGAGGTAAAGTC
1 GGAGGTAAAGTC
*
99416 GGAGGCAAAGTC
1 GGAGGTAAAGTC
99428 GGAGGT
1 GGAGGT
99434 GTACTCGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.47, T:0.13
Consensus pattern (12 bp):
GGAGGTAAAGTC
Left flanking sequence: Indices 98904 -- 99403
AACCGCGCCAGCAACATCTCCACGAGCGCCAAGTCGAGGTTGGTCTGCTTGAGCTGCACCGCCAA
CTGGGGCAGCCGCTTGCAGCAGTCGCCGAGCACCCGGAACGGCAGCAAGAGGTGGCGGGGCACCG
GGTGCACCAGCCGCATGAGGGTGACGAGCGTGGGGAACAACGGCTCCACCTCGGCCGGGGCGGCG
GCGGCGACGGCGTTGACGGCGGCGACCGCGAGCTGGGGGTGGCTCAGGCGGCACCACCGGAGCAC
CCGGCGGAGGGTGGCGGGGGGGAGGTGCGGGTGCTGTGCGGCGCCGGCGAGGTGCACCTGGCACC
ACGCGGTGGCGAGGGCCGCGGCGTCGGCGGCGGAGGAGGCGCGCGCGAGAGCCGCGGTGAGGGCG
GCGACCACGGGGCCCCACGCGGGGTCGGGGCCCGCCTCCACGGTGATGGGGACGAGCGCGAGCGC
GCGGAGGCTGGGGGAGGGGCCGGAGGGGGAGGAGGAGGAGGAAGA
Right flanking sequence: Indices 99434 -- 99933
GTACTCGGAGACACCAAAGTCGGAGGCAGTGATGTCGGAGGTGGGGAAATCTGACGAACTGGAGG
CGTTGGTGTATGAGTTGGTGGAGGCAAAGGCGGTAGTGCTGTGACCAGGGGTGTTGTTGCTACCG
TGGGTGTTGCTACCGTGGGTGTTGCCACCGTAGGTGTTGCTACCGTGGGCATTGCCGTCACCGTG
TGCGCTGTGTGCACTGTGACTAGCACCGTGTGCACCGCGTGCCTGTCGATCGCTCCACGCCGCCA
CCAGGTGCTCGATAAACCCAAGCAACGCCGGGAGGTGCCGCCCCACGGGCAACCGCGCGTGGTTG
GCCAAGAGCACCAAAATGTCCACGCTGTAGTTGACAAACTGCACCACGTCCACCGCACCGGGGTG
CTCCGCGAGTGCCGGTGCCACCGCGAGCCCCTCGATCACCAGCGGCACCACCCCGAAAAAAGGGG
CGAGCGGCGCCGGCAGCGCTGCCAGCAGCGAGTTGAGGAGGAGGG
Found at i:99570 original size:18 final size:18
Alignment explanation
Indices: 99547--99587 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 18
99537 CTGTGACCAG
99547 GGGTGTTGTTGCTACCGT
1 GGGTGTTGTTGCTACCGT
99565 -GG-G-TGTTGCTACCGT
1 GGGTGTTGTTGCTACCGT
99580 GGGTGTTG
1 GGGTGTTG
99588 CCACCGTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
15 12 0.60
16 3 0.15
17 3 0.15
18 2 0.10
ACGTcount: A:0.05, C:0.15, G:0.44, T:0.37
Consensus pattern (18 bp):
GGGTGTTGTTGCTACCGT
Left flanking sequence: Indices 99047 -- 99546
CATGAGGGTGACGAGCGTGGGGAACAACGGCTCCACCTCGGCCGGGGCGGCGGCGGCGACGGCGT
TGACGGCGGCGACCGCGAGCTGGGGGTGGCTCAGGCGGCACCACCGGAGCACCCGGCGGAGGGTG
GCGGGGGGGAGGTGCGGGTGCTGTGCGGCGCCGGCGAGGTGCACCTGGCACCACGCGGTGGCGAG
GGCCGCGGCGTCGGCGGCGGAGGAGGCGCGCGCGAGAGCCGCGGTGAGGGCGGCGACCACGGGGC
CCCACGCGGGGTCGGGGCCCGCCTCCACGGTGATGGGGACGAGCGCGAGCGCGCGGAGGCTGGGG
GAGGGGCCGGAGGGGGAGGAGGAGGAGGAAGAGGAGGTAAAGTCGGAGGCAAAGTCGGAGGTGTA
CTCGGAGACACCAAAGTCGGAGGCAGTGATGTCGGAGGTGGGGAAATCTGACGAACTGGAGGCGT
TGGTGTATGAGTTGGTGGAGGCAAAGGCGGTAGTGCTGTGACCAG
Right flanking sequence: Indices 99588 -- 100087
CCACCGTAGGTGTTGCTACCGTGGGCATTGCCGTCACCGTGTGCGCTGTGTGCACTGTGACTAGC
ACCGTGTGCACCGCGTGCCTGTCGATCGCTCCACGCCGCCACCAGGTGCTCGATAAACCCAAGCA
ACGCCGGGAGGTGCCGCCCCACGGGCAACCGCGCGTGGTTGGCCAAGAGCACCAAAATGTCCACG
CTGTAGTTGACAAACTGCACCACGTCCACCGCACCGGGGTGCTCCGCGAGTGCCGGTGCCACCGC
GAGCCCCTCGATCACCAGCGGCACCACCCCGAAAAAAGGGGCGAGCGGCGCCGGCAGCGCTGCCA
GCAGCGAGTTGAGGAGGAGGGTGGTGACCACGAGGAGGGACGCCAAGCGCGCCGCGGCGTCGGGC
GCCGGGGGCCGGTGCAGCCGCGCCGCCGCCGTCACCTCGCCGAGGGTGGCGGTGACCAGGGCGAT
GATCTGGCGGGTGGTGGCGGTGTCGGCGACCACGGTGTGTTTGAG
Found at i:99618 original size:15 final size:15
Alignment explanation
Indices: 99553--99612 Score: 102
Period size: 15 Copynumber: 4.0 Consensus size: 15
99543 CCAGGGGTGT
99553 TGTTGCTACCGTGGG
1 TGTTGCTACCGTGGG
99568 TGTTGCTACCGTGGG
1 TGTTGCTACCGTGGG
* *
99583 TGTTGCCACCGTAGG
1 TGTTGCTACCGTGGG
99598 TGTTGCTACCGTGGG
1 TGTTGCTACCGTGGG
99613 CATTGCCGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 41 1.00
ACGTcount: A:0.08, C:0.22, G:0.38, T:0.32
Consensus pattern (15 bp):
TGTTGCTACCGTGGG
Left flanking sequence: Indices 99053 -- 99552
GGTGACGAGCGTGGGGAACAACGGCTCCACCTCGGCCGGGGCGGCGGCGGCGACGGCGTTGACGG
CGGCGACCGCGAGCTGGGGGTGGCTCAGGCGGCACCACCGGAGCACCCGGCGGAGGGTGGCGGGG
GGGAGGTGCGGGTGCTGTGCGGCGCCGGCGAGGTGCACCTGGCACCACGCGGTGGCGAGGGCCGC
GGCGTCGGCGGCGGAGGAGGCGCGCGCGAGAGCCGCGGTGAGGGCGGCGACCACGGGGCCCCACG
CGGGGTCGGGGCCCGCCTCCACGGTGATGGGGACGAGCGCGAGCGCGCGGAGGCTGGGGGAGGGG
CCGGAGGGGGAGGAGGAGGAGGAAGAGGAGGTAAAGTCGGAGGCAAAGTCGGAGGTGTACTCGGA
GACACCAAAGTCGGAGGCAGTGATGTCGGAGGTGGGGAAATCTGACGAACTGGAGGCGTTGGTGT
ATGAGTTGGTGGAGGCAAAGGCGGTAGTGCTGTGACCAGGGGTGT
Right flanking sequence: Indices 99613 -- 100112
CATTGCCGTCACCGTGTGCGCTGTGTGCACTGTGACTAGCACCGTGTGCACCGCGTGCCTGTCGA
TCGCTCCACGCCGCCACCAGGTGCTCGATAAACCCAAGCAACGCCGGGAGGTGCCGCCCCACGGG
CAACCGCGCGTGGTTGGCCAAGAGCACCAAAATGTCCACGCTGTAGTTGACAAACTGCACCACGT
CCACCGCACCGGGGTGCTCCGCGAGTGCCGGTGCCACCGCGAGCCCCTCGATCACCAGCGGCACC
ACCCCGAAAAAAGGGGCGAGCGGCGCCGGCAGCGCTGCCAGCAGCGAGTTGAGGAGGAGGGTGGT
GACCACGAGGAGGGACGCCAAGCGCGCCGCGGCGTCGGGCGCCGGGGGCCGGTGCAGCCGCGCCG
CCGCCGTCACCTCGCCGAGGGTGGCGGTGACCAGGGCGATGATCTGGCGGGTGGTGGCGGTGTCG
GCGACCACGGTGTGTTTGAGGTCCTTGTTGCCGATGAGATCGACG
Found at i:99619 original size:30 final size:30
Alignment explanation
Indices: 99555--99619 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
99545 AGGGGTGTTG
* * **
99555 TTGCTACCGTGGGTGTTGCTACCGTGGGTG
1 TTGCCACCGTAGGTGTTGCTACCGTGGGCA
99585 TTGCCACCGTAGGTGTTGCTACCGTGGGCA
1 TTGCCACCGTAGGTGTTGCTACCGTGGGCA
99615 TTGCC
1 TTGCC
99620 GTCACCGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.31
Consensus pattern (30 bp):
TTGCCACCGTAGGTGTTGCTACCGTGGGCA
Left flanking sequence: Indices 99055 -- 99554
TGACGAGCGTGGGGAACAACGGCTCCACCTCGGCCGGGGCGGCGGCGGCGACGGCGTTGACGGCG
GCGACCGCGAGCTGGGGGTGGCTCAGGCGGCACCACCGGAGCACCCGGCGGAGGGTGGCGGGGGG
GAGGTGCGGGTGCTGTGCGGCGCCGGCGAGGTGCACCTGGCACCACGCGGTGGCGAGGGCCGCGG
CGTCGGCGGCGGAGGAGGCGCGCGCGAGAGCCGCGGTGAGGGCGGCGACCACGGGGCCCCACGCG
GGGTCGGGGCCCGCCTCCACGGTGATGGGGACGAGCGCGAGCGCGCGGAGGCTGGGGGAGGGGCC
GGAGGGGGAGGAGGAGGAGGAAGAGGAGGTAAAGTCGGAGGCAAAGTCGGAGGTGTACTCGGAGA
CACCAAAGTCGGAGGCAGTGATGTCGGAGGTGGGGAAATCTGACGAACTGGAGGCGTTGGTGTAT
GAGTTGGTGGAGGCAAAGGCGGTAGTGCTGTGACCAGGGGTGTTG
Right flanking sequence: Indices 99620 -- 100119
GTCACCGTGTGCGCTGTGTGCACTGTGACTAGCACCGTGTGCACCGCGTGCCTGTCGATCGCTCC
ACGCCGCCACCAGGTGCTCGATAAACCCAAGCAACGCCGGGAGGTGCCGCCCCACGGGCAACCGC
GCGTGGTTGGCCAAGAGCACCAAAATGTCCACGCTGTAGTTGACAAACTGCACCACGTCCACCGC
ACCGGGGTGCTCCGCGAGTGCCGGTGCCACCGCGAGCCCCTCGATCACCAGCGGCACCACCCCGA
AAAAAGGGGCGAGCGGCGCCGGCAGCGCTGCCAGCAGCGAGTTGAGGAGGAGGGTGGTGACCACG
AGGAGGGACGCCAAGCGCGCCGCGGCGTCGGGCGCCGGGGGCCGGTGCAGCCGCGCCGCCGCCGT
CACCTCGCCGAGGGTGGCGGTGACCAGGGCGATGATCTGGCGGGTGGTGGCGGTGTCGGCGACCA
CGGTGTGTTTGAGGTCCTTGTTGCCGATGAGATCGACGCGGAGCT
Done.