sallet_3.scaffold.fasta.s28.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold31
Parameters: 2 7 7 80 10 50 500
Length:  101557

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190--236	16	2.8	17	76	23	55	31	0	63	4	1.13
192--238	15	2.9	15	79	20	51	34	0	61	4	1.15
1117--1154	20	1.9	20	100	0	76	15	28	28	26	1.96
1339--1394	13	4.3	13	88	0	85	28	46	0	25	1.53
1335--1394	26	2.3	26	86	11	95	28	46	0	25	1.53
1402--1444	8	5.5	8	83	5	61	13	46	0	39	1.44
1404--1444	15	2.6	16	88	3	66	14	43	0	41	1.45
1441--1480	19	2.1	19	90	0	62	12	62	0	25	1.30
1606--1641	11	3.4	11	92	3	56	19	66	5	8	1.38
1612--1645	11	3.1	11	95	0	59	17	70	2	8	1.25
2609--2654	20	2.4	19	81	3	56	10	65	17	6	1.45
2983--3045	15	4.3	15	80	10	58	17	31	11	39	1.85
3083--3109	10	2.7	10	100	0	54	11	59	11	18	1.60
3171--3221	10	5.1	10	87	0	57	25	45	11	17	1.83
3901--3935	18	1.9	18	94	0	61	0	60	40	0	0.97
4671--4714	12	3.7	12	90	0	70	6	0	43	50	1.29
5650--5700	10	5.1	10	95	0	66	29	33	25	11	1.91
5655--5700	20	2.3	20	96	0	83	28	32	28	10	1.91
7489--7555	27	2.5	27	87	0	98	44	8	40	5	1.60
8836--8885	11	4.6	11	80	2	57	24	28	12	36	1.91
8836--8885	22	2.3	21	86	3	64	24	28	12	36	1.91
8931--9114	28	6.6	28	76	6	160	19	30	6	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10705--10750	24	1.9	24	95	0	83	19	41	34	4	1.71
10995--11029	17	2.0	17	88	5	52	25	5	42	25	1.77
11011--11090	15	5.3	15	89	3	108	26	10	36	27	1.88
11249--11276	12	2.3	12	100	0	56	35	35	7	21	1.81
12683--12714	9	3.6	9	100	0	64	9	12	65	12	1.47
13393--13469	8	9.6	9	77	17	73	24	45	20	9	1.80
13393--13468	24	3.2	25	80	14	81	25	46	21	7	1.78
13415--13469	16	3.5	16	92	7	87	25	47	21	5	1.72
17522--17554	12	2.6	13	95	4	59	12	18	24	45	1.83
17958--18036	12	6.7	12	83	2	79	34	56	3	5	1.39
24038--24076	12	3.2	12	96	0	69	2	58	0	38	1.12
25494--25527	14	2.4	14	100	0	68	35	35	17	11	1.87
25860--25884	6	4.2	6	100	0	50	0	16	52	32	1.44
25971--26009	12	3.2	12	81	0	51	0	25	38	35	1.56
26097--26122	6	4.3	6	100	0	52	0	15	50	34	1.45
31696--31821	6	19.0	6	76	18	90	0	0	45	53	1.11
31691--31818	14	9.2	14	84	9	131	0	0	45	53	1.11
31696--31821	20	6.3	20	80	13	127	0	0	45	53	1.11
45922--45956	12	2.6	14	82	17	56	22	22	8	45	1.79
47053--47082	9	3.3	9	90	0	51	20	0	50	30	1.49
50737--50800	16	4.0	16	84	8	85	35	12	25	26	1.91
51946--51983	13	2.8	14	84	8	60	31	7	31	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54016--54051	17	2.1	18	94	5	65	22	0	55	22	1.44
54016--54051	9	4.1	9	92	7	65	22	0	55	22	1.44
55615--55653	15	2.6	15	87	0	60	20	15	41	23	1.90
55608--55710	48	2.1	49	87	5	145	19	13	47	19	1.82
55691--55791	18	5.6	18	93	0	157	15	18	47	17	1.83
55690--55809	36	3.3	36	86	0	168	15	20	46	18	1.84
55676--55809	54	2.5	54	80	4	162	14	20	44	20	1.86
55838--55866	12	2.4	12	100	0	58	20	20	41	17	1.90
56028--56075	24	2.0	24	88	8	71	10	50	14	25	1.74
56103--56171	9	7.7	9	72	18	63	18	53	24	2	1.58
56108--56184	15	5.1	15	76	19	72	16	55	24	2	1.54
56210--56261	24	2.2	24	86	6	70	11	32	30	25	1.91
56227--56261	12	2.9	12	100	0	70	8	31	34	25	1.86
58089--58207	11	10.8	11	87	0	130	23	25	24	26	2.00
58089--58183	22	4.3	22	87	0	145	22	23	25	29	1.99
58251--58290	11	3.6	11	93	0	62	37	32	20	10	1.85
58301--58338	11	3.5	11	92	7	60	26	21	23	28	1.99
58453--58500	24	2.0	24	88	8	71	35	60	0	4	1.16
60034--60085	21	2.5	21	84	6	70	32	23	44	0	1.54
60052--60100	21	2.3	21	85	0	62	28	24	44	2	1.65
60800--60864	30	2.2	30	85	0	85	21	30	33	13	1.92
62058--62133	30	2.5	30	82	0	98	19	30	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62620--62678	21	2.8	21	77	10	75	32	33	25	8	1.86
63916--63979	24	2.7	24	77	0	65	25	26	28	20	1.99
65191--65258	18	3.8	18	92	0	109	22	14	44	19	1.86
65280--65325	21	2.2	21	96	0	83	23	19	32	23	1.97
65967--66007	18	2.3	18	95	0	73	4	26	48	19	1.69
67005--67041	14	2.6	14	100	0	74	16	8	48	27	1.74
68805--68848	14	3.2	14	93	3	72	50	0	50	0	1.00
68801--68857	14	4.5	13	81	14	66	47	0	50	1	1.11
69495--69524	14	2.1	14	93	0	51	10	60	0	30	1.30
90137--90169	12	2.8	12	95	0	57	42	6	51	0	1.26
90166--90203	12	3.1	12	88	11	51	52	0	47	0	1.00
90592--90617	13	2.0	13	100	0	52	15	23	15	46	1.83
91389--91426	13	3.0	13	85	14	53	2	0	52	44	1.14
92167--92210	23	1.9	23	95	0	79	31	47	0	20	1.50
94043--94103	2	33.5	2	80	18	71	0	0	42	57	0.98
94033--94110	9	8.7	9	80	10	70	2	1	39	56	1.21
94031--94110	18	4.6	17	84	9	99	2	1	40	56	1.21
94031--94101	7	10.4	7	82	14	87	1	1	40	56	1.17
94031--94110	16	5.2	16	82	14	96	2	1	40	56	1.21
94178--94227	26	1.9	26	83	0	64	32	6	26	36	1.81
95053--95140	24	3.7	24	87	0	131	6	3	48	40	1.46
100448--100510	10	6.5	10	94	3	94	14	20	44	20	1.86

Tables:   1

The End!