Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold31
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 101557
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Found at i:213 original size:18 final size:17
Alignment explanation
Indices: 190--236 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
180 GAAGGAGAGG
190 GAGGAGGTGAGAGGGAGA
1 GAGGAGGTGAGAGGGA-A
208 GAGGAGG-GAG-GAGGAA
1 GAGGAGGTGAGAG-GGAA
224 G-GGAGGTGAGAGG
1 GAGGAGGTGAGAGG
237 AAAAAGAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
15 5 0.19
16 7 0.27
17 7 0.27
18 7 0.27
ACGTcount: A:0.32, C:0.00, G:0.64, T:0.04
Consensus pattern (17 bp):
GAGGAGGTGAGAGGGAA
Left flanking sequence: Indices 1 -- 189
AGTGTTGGGAGGCACAAAGGGGTAGGGTGGAAGAGGGTGGAGAGTAGGGGTGGGAGGTAGAGAGA
GAGGTGGTGGGTGGGAGTGGTGGGACACCGCGGGCGGGGGTTGCGAGGCGTCCCCTTTTTCCCGC
GTTTTGTGGCGTGGCCCTTACATTCGCACCAGATGTGGGGCACGCGAGGGAAGGAGAGG
Right flanking sequence: Indices 237 -- 736
AAAAAGAGTGAGGAGTAAGAGATAGGAGGAAGGGTGTGAGGAAGGAGTGATTGGTGGAGGGTTTG
GATAGTAGGTGAATGGTTTAGTAGAGAAACCAGGTGTATAGTAGGTCTTTTCTGGGCATGTGCTT
CTACGACGCGTCATAGTTTAAGAACACGGCCCGTAACTCGTCCCGTGCGTCTTGTCTCGTGTTTG
GTCTCGTGCGATGTCTCGTGTCTTGTTTGGTTTGTTTCAGGTTGGTAGCGTGGGTCCAGGCTGAA
ACAAAAGTGAAACAGTGGATCACTGGTTATGAGTGGTTGCAAATTGTACAGACCAGGAAGGTGGT
CCCGAATTGGAGATTATTGCTAGGTCCATTGCTCGTATTTACGAGTGGGTACAGAGGGTTGGTAG
GTTAGTGCTTAAGGTAGCTTTTGGGTATTTAGGCCACCGGTGACGGTGACTGGCTCGGAAGAACC
AGATGACGCTTTGATTGTCACCGTGGGAATCACCGACGTATTAAT
Found at i:228 original size:15 final size:15
Alignment explanation
Indices: 192--238 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
182 AGGAGAGGGA
192 GGAGGTGAGAGGGAGAG
1 GGAGGTGAGA-GGA-AG
209 AGGAGG-GAGGAGGAAG
1 -GGAGGTGA-GAGGAAG
225 GGAGGTGAGAGGAA
1 GGAGGTGAGAGGAA
239 AAAGAGTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 11 0.41
16 4 0.15
17 5 0.19
18 7 0.26
ACGTcount: A:0.34, C:0.00, G:0.62, T:0.04
Consensus pattern (15 bp):
GGAGGTGAGAGGAAG
Left flanking sequence: Indices 1 -- 191
AGTGTTGGGAGGCACAAAGGGGTAGGGTGGAAGAGGGTGGAGAGTAGGGGTGGGAGGTAGAGAGA
GAGGTGGTGGGTGGGAGTGGTGGGACACCGCGGGCGGGGGTTGCGAGGCGTCCCCTTTTTCCCGC
GTTTTGTGGCGTGGCCCTTACATTCGCACCAGATGTGGGGCACGCGAGGGAAGGAGAGGGA
Right flanking sequence: Indices 239 -- 738
AAAGAGTGAGGAGTAAGAGATAGGAGGAAGGGTGTGAGGAAGGAGTGATTGGTGGAGGGTTTGGA
TAGTAGGTGAATGGTTTAGTAGAGAAACCAGGTGTATAGTAGGTCTTTTCTGGGCATGTGCTTCT
ACGACGCGTCATAGTTTAAGAACACGGCCCGTAACTCGTCCCGTGCGTCTTGTCTCGTGTTTGGT
CTCGTGCGATGTCTCGTGTCTTGTTTGGTTTGTTTCAGGTTGGTAGCGTGGGTCCAGGCTGAAAC
AAAAGTGAAACAGTGGATCACTGGTTATGAGTGGTTGCAAATTGTACAGACCAGGAAGGTGGTCC
CGAATTGGAGATTATTGCTAGGTCCATTGCTCGTATTTACGAGTGGGTACAGAGGGTTGGTAGGT
TAGTGCTTAAGGTAGCTTTTGGGTATTTAGGCCACCGGTGACGGTGACTGGCTCGGAAGAACCAG
ATGACGCTTTGATTGTCACCGTGGGAATCACCGACGTATTAATAT
Found at i:1142 original size:20 final size:20
Alignment explanation
Indices: 1117--1154 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
1107 AGCGGTAGCC
1117 TCGATCGGTAGCCTCGTACG
1 TCGATCGGTAGCCTCGTACG
1137 TCGATCGGTAGCCTCGTA
1 TCGATCGGTAGCCTCGTA
1155 TCGGCTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (20 bp):
TCGATCGGTAGCCTCGTACG
Left flanking sequence: Indices 617 -- 1116
GGGTTGGTAGGTTAGTGCTTAAGGTAGCTTTTGGGTATTTAGGCCACCGGTGACGGTGACTGGCT
CGGAAGAACCAGATGACGCTTTGATTGTCACCGTGGGAATCACCGACGTATTAATATGGGCCACT
CAGTGGATTTGAGCATTCAGTTGTTTTTCCGATCTGCTAGCTTTTGTAAAACATAAATGTCAATT
TAGTCTCAGCTAGGTAATTCCCACATGGTCGAGGGACAAAGGGTCACAAAACGATATACGTCCAC
GATCTGCCATTTTAACCGGTCCATCTGCATTTAGTACCGCCTAGGTGGAGATTTGCAGCCAAGCC
ACCATTTACGGGCGGCCACAGAAAGATATTGACAAGCCTTTTCCGGTTTCAATGCCCCAATACGA
TTCAACTCCAATTACACATGTCCAGCATTTGGCCACAATGAGACCACCTCCACTTCTCAAACCCT
TTACAACTCTTGGCACCGCTACCTAAGACAGCCCGAGCGGTAGCC
Right flanking sequence: Indices 1155 -- 1654
TCGGCTCTAACTAACCAACCTGGTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAAC
TCAAAGCCTACTCCAACAATGCTCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTC
TAATCCGTATCCAACCCTAACATACTTACCTGCCATACCCTACTACCCCACTACCCTACTCACCT
AACCTACTCACCTTACCTACTCACCTAAACTACTCACCTACCCTATTCATCCCCACTCTTCCACT
CTTCATTCTTCCACTCTTCTACTCTTCCACCATCCCACCTTCCTCCCACCTTCCCACCTTCTTCC
CCTTCCCCCTCCGCCCACTGCAGAAACGTCATCCCACTCCGCCCCTAAGCCACGCCCACCCACCC
CTCGGTTCCCCGCTCGCCATTGTCCCACCCACCCCATCTTTGTCCTAATTACACCAGTCCTCCAC
GACCTCCCACGACCCTCCCACCACCCTCCCACCACCTTCTCCTCC
Found at i:1355 original size:13 final size:13
Alignment explanation
Indices: 1339--1394 Score: 85
Period size: 13 Copynumber: 4.3 Consensus size: 13
1329 ACCCCACTAC
1339 CCTACTCACCTAA
1 CCTACTCACCTAA
*
1352 CCTACTCACCTTA
1 CCTACTCACCTAA
1365 CCTACTCACCTAA
1 CCTACTCACCTAA
* *
1378 ACTACTCACCTAC
1 CCTACTCACCTAA
1391 CCTA
1 CCTA
1395 TTCATCCCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.29, C:0.46, G:0.00, T:0.25
Consensus pattern (13 bp):
CCTACTCACCTAA
Left flanking sequence: Indices 839 -- 1338
GTCGAGGGACAAAGGGTCACAAAACGATATACGTCCACGATCTGCCATTTTAACCGGTCCATCTG
CATTTAGTACCGCCTAGGTGGAGATTTGCAGCCAAGCCACCATTTACGGGCGGCCACAGAAAGAT
ATTGACAAGCCTTTTCCGGTTTCAATGCCCCAATACGATTCAACTCCAATTACACATGTCCAGCA
TTTGGCCACAATGAGACCACCTCCACTTCTCAAACCCTTTACAACTCTTGGCACCGCTACCTAAG
ACAGCCCGAGCGGTAGCCTCGATCGGTAGCCTCGTACGTCGATCGGTAGCCTCGTATCGGCTCTA
ACTAACCAACCTGGTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAACTCAAAGCCT
ACTCCAACAATGCTCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTCTAATCCGTA
TCCAACCCTAACATACTTACCTGCCATACCCTACTACCCCACTAC
Right flanking sequence: Indices 1395 -- 1894
TTCATCCCCACTCTTCCACTCTTCATTCTTCCACTCTTCTACTCTTCCACCATCCCACCTTCCTC
CCACCTTCCCACCTTCTTCCCCTTCCCCCTCCGCCCACTGCAGAAACGTCATCCCACTCCGCCCC
TAAGCCACGCCCACCCACCCCTCGGTTCCCCGCTCGCCATTGTCCCACCCACCCCATCTTTGTCC
TAATTACACCAGTCCTCCACGACCTCCCACGACCCTCCCACCACCCTCCCACCACCTTCTCCTCC
ACCATCTCGTAAACCCATCCCAAAACACCCAAACACCCCCCCAGCACTCCTGGCGCACCCCACCC
ACTGCAACGTGACACTCCACCCATGCAGACTTTTCCCAACCGTTTTAGGCCCGTTTGCACCCACC
TTATTGGCCGGTGGCCCAATTGCCCGATTGGGACACCGGGCCCTCACAAAGGACCCTAAAATTAG
CGGGCTGGGTGGTCCGGCCCACCCGCCAGCCGCAAAACCACCGCG
Found at i:1394 original size:26 final size:26
Alignment explanation
Indices: 1335--1394 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
1325 TACTACCCCA
*
1335 CTACCCTACTCACCTAACCTACTCAC
1 CTACCCTACTCACCTAAACTACTCAC
1361 CTTA-CCTACTCACCTAAACTACTCAC
1 C-TACCCTACTCACCTAAACTACTCAC
1387 CTACCCTA
1 CTACCCTA
1395 TTCATCCCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 27 0.87
27 2 0.06
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.25
Consensus pattern (26 bp):
CTACCCTACTCACCTAAACTACTCAC
Left flanking sequence: Indices 835 -- 1334
CATGGTCGAGGGACAAAGGGTCACAAAACGATATACGTCCACGATCTGCCATTTTAACCGGTCCA
TCTGCATTTAGTACCGCCTAGGTGGAGATTTGCAGCCAAGCCACCATTTACGGGCGGCCACAGAA
AGATATTGACAAGCCTTTTCCGGTTTCAATGCCCCAATACGATTCAACTCCAATTACACATGTCC
AGCATTTGGCCACAATGAGACCACCTCCACTTCTCAAACCCTTTACAACTCTTGGCACCGCTACC
TAAGACAGCCCGAGCGGTAGCCTCGATCGGTAGCCTCGTACGTCGATCGGTAGCCTCGTATCGGC
TCTAACTAACCAACCTGGTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAACTCAAA
GCCTACTCCAACAATGCTCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTCTAATC
CGTATCCAACCCTAACATACTTACCTGCCATACCCTACTACCCCA
Right flanking sequence: Indices 1395 -- 1894
TTCATCCCCACTCTTCCACTCTTCATTCTTCCACTCTTCTACTCTTCCACCATCCCACCTTCCTC
CCACCTTCCCACCTTCTTCCCCTTCCCCCTCCGCCCACTGCAGAAACGTCATCCCACTCCGCCCC
TAAGCCACGCCCACCCACCCCTCGGTTCCCCGCTCGCCATTGTCCCACCCACCCCATCTTTGTCC
TAATTACACCAGTCCTCCACGACCTCCCACGACCCTCCCACCACCCTCCCACCACCTTCTCCTCC
ACCATCTCGTAAACCCATCCCAAAACACCCAAACACCCCCCCAGCACTCCTGGCGCACCCCACCC
ACTGCAACGTGACACTCCACCCATGCAGACTTTTCCCAACCGTTTTAGGCCCGTTTGCACCCACC
TTATTGGCCGGTGGCCCAATTGCCCGATTGGGACACCGGGCCCTCACAAAGGACCCTAAAATTAG
CGGGCTGGGTGGTCCGGCCCACCCGCCAGCCGCAAAACCACCGCG
Found at i:1415 original size:8 final size:8
Alignment explanation
Indices: 1402--1444 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
1392 CTATTCATCC
1402 CCACTCTT
1 CCACTCTT
1410 CCACTCTT
1 CCACTCTT
*
1418 -CATTCTT
1 CCACTCTT
1425 CCACTCTT
1 CCACTCTT
*
1433 CTACTCTT
1 CCACTCTT
1441 CCAC
1 CCAC
1445 CATCCCACCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 6 0.20
8 24 0.80
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.40
Consensus pattern (8 bp):
CCACTCTT
Left flanking sequence: Indices 902 -- 1401
TGCATTTAGTACCGCCTAGGTGGAGATTTGCAGCCAAGCCACCATTTACGGGCGGCCACAGAAAG
ATATTGACAAGCCTTTTCCGGTTTCAATGCCCCAATACGATTCAACTCCAATTACACATGTCCAG
CATTTGGCCACAATGAGACCACCTCCACTTCTCAAACCCTTTACAACTCTTGGCACCGCTACCTA
AGACAGCCCGAGCGGTAGCCTCGATCGGTAGCCTCGTACGTCGATCGGTAGCCTCGTATCGGCTC
TAACTAACCAACCTGGTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAACTCAAAGC
CTACTCCAACAATGCTCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTCTAATCCG
TATCCAACCCTAACATACTTACCTGCCATACCCTACTACCCCACTACCCTACTCACCTAACCTAC
TCACCTTACCTACTCACCTAAACTACTCACCTACCCTATTCATCC
Right flanking sequence: Indices 1445 -- 1944
CATCCCACCTTCCTCCCACCTTCCCACCTTCTTCCCCTTCCCCCTCCGCCCACTGCAGAAACGTC
ATCCCACTCCGCCCCTAAGCCACGCCCACCCACCCCTCGGTTCCCCGCTCGCCATTGTCCCACCC
ACCCCATCTTTGTCCTAATTACACCAGTCCTCCACGACCTCCCACGACCCTCCCACCACCCTCCC
ACCACCTTCTCCTCCACCATCTCGTAAACCCATCCCAAAACACCCAAACACCCCCCCAGCACTCC
TGGCGCACCCCACCCACTGCAACGTGACACTCCACCCATGCAGACTTTTCCCAACCGTTTTAGGC
CCGTTTGCACCCACCTTATTGGCCGGTGGCCCAATTGCCCGATTGGGACACCGGGCCCTCACAAA
GGACCCTAAAATTAGCGGGCTGGGTGGTCCGGCCCACCCGCCAGCCGCAAAACCACCGCGGCCAC
AGAGCCCCCGCGTGCGCCTGCACCCGCCTCGCGGCCGTGGTGTCG
Found at i:1426 original size:15 final size:16
Alignment explanation
Indices: 1404--1444 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
1394 ATTCATCCCC
1404 ACTCTTCCACTCTTC-
1 ACTCTTCCACTCTTCT
*
1419 ATTCTTCCACTCTTCT
1 ACTCTTCCACTCTTCT
1435 ACTCTTCCAC
1 ACTCTTCCAC
1445 CATCCCACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.41
Consensus pattern (16 bp):
ACTCTTCCACTCTTCT
Left flanking sequence: Indices 904 -- 1403
CATTTAGTACCGCCTAGGTGGAGATTTGCAGCCAAGCCACCATTTACGGGCGGCCACAGAAAGAT
ATTGACAAGCCTTTTCCGGTTTCAATGCCCCAATACGATTCAACTCCAATTACACATGTCCAGCA
TTTGGCCACAATGAGACCACCTCCACTTCTCAAACCCTTTACAACTCTTGGCACCGCTACCTAAG
ACAGCCCGAGCGGTAGCCTCGATCGGTAGCCTCGTACGTCGATCGGTAGCCTCGTATCGGCTCTA
ACTAACCAACCTGGTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAACTCAAAGCCT
ACTCCAACAATGCTCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTCTAATCCGTA
TCCAACCCTAACATACTTACCTGCCATACCCTACTACCCCACTACCCTACTCACCTAACCTACTC
ACCTTACCTACTCACCTAAACTACTCACCTACCCTATTCATCCCC
Right flanking sequence: Indices 1445 -- 1944
CATCCCACCTTCCTCCCACCTTCCCACCTTCTTCCCCTTCCCCCTCCGCCCACTGCAGAAACGTC
ATCCCACTCCGCCCCTAAGCCACGCCCACCCACCCCTCGGTTCCCCGCTCGCCATTGTCCCACCC
ACCCCATCTTTGTCCTAATTACACCAGTCCTCCACGACCTCCCACGACCCTCCCACCACCCTCCC
ACCACCTTCTCCTCCACCATCTCGTAAACCCATCCCAAAACACCCAAACACCCCCCCAGCACTCC
TGGCGCACCCCACCCACTGCAACGTGACACTCCACCCATGCAGACTTTTCCCAACCGTTTTAGGC
CCGTTTGCACCCACCTTATTGGCCGGTGGCCCAATTGCCCGATTGGGACACCGGGCCCTCACAAA
GGACCCTAAAATTAGCGGGCTGGGTGGTCCGGCCCACCCGCCAGCCGCAAAACCACCGCGGCCAC
AGAGCCCCCGCGTGCGCCTGCACCCGCCTCGCGGCCGTGGTGTCG
Found at i:1469 original size:19 final size:19
Alignment explanation
Indices: 1441--1480 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1431 TTCTACTCTT
1441 CCACCATCCCACCTTCCTC
1 CCACCATCCCACCTTCCTC
* *
1460 CCACCTTCCCACCTTCTTC
1 CCACCATCCCACCTTCCTC
1479 CC
1 CC
1481 CTTCCCCCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.62, G:0.00, T:0.25
Consensus pattern (19 bp):
CCACCATCCCACCTTCCTC
Left flanking sequence: Indices 941 -- 1440
CACCATTTACGGGCGGCCACAGAAAGATATTGACAAGCCTTTTCCGGTTTCAATGCCCCAATACG
ATTCAACTCCAATTACACATGTCCAGCATTTGGCCACAATGAGACCACCTCCACTTCTCAAACCC
TTTACAACTCTTGGCACCGCTACCTAAGACAGCCCGAGCGGTAGCCTCGATCGGTAGCCTCGTAC
GTCGATCGGTAGCCTCGTATCGGCTCTAACTAACCAACCTGGTGGCTTAGGCACCCACTCCCAAC
CCGATCCGACCATTTCAACTCAAAGCCTACTCCAACAATGCTCGCTGTAGCCTCCGTTACGCACC
CAACGCCCTTACCTTTCTCTAATCCGTATCCAACCCTAACATACTTACCTGCCATACCCTACTAC
CCCACTACCCTACTCACCTAACCTACTCACCTTACCTACTCACCTAAACTACTCACCTACCCTAT
TCATCCCCACTCTTCCACTCTTCATTCTTCCACTCTTCTACTCTT
Right flanking sequence: Indices 1481 -- 1980
CTTCCCCCTCCGCCCACTGCAGAAACGTCATCCCACTCCGCCCCTAAGCCACGCCCACCCACCCC
TCGGTTCCCCGCTCGCCATTGTCCCACCCACCCCATCTTTGTCCTAATTACACCAGTCCTCCACG
ACCTCCCACGACCCTCCCACCACCCTCCCACCACCTTCTCCTCCACCATCTCGTAAACCCATCCC
AAAACACCCAAACACCCCCCCAGCACTCCTGGCGCACCCCACCCACTGCAACGTGACACTCCACC
CATGCAGACTTTTCCCAACCGTTTTAGGCCCGTTTGCACCCACCTTATTGGCCGGTGGCCCAATT
GCCCGATTGGGACACCGGGCCCTCACAAAGGACCCTAAAATTAGCGGGCTGGGTGGTCCGGCCCA
CCCGCCAGCCGCAAAACCACCGCGGCCACAGAGCCCCCGCGTGCGCCTGCACCCGCCTCGCGGCC
GTGGTGTCGCAGTGGCCCCACATGAGCCCATCTCCACCGGCCCTC
Found at i:1628 original size:11 final size:11
Alignment explanation
Indices: 1606--1641 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
1596 CACCAGTCCT
1606 CCACGA-CCTC
1 CCACGACCCTC
1616 CCACGACCCTC
1 CCACGACCCTC
*
1627 CCACCACCCTC
1 CCACGACCCTC
1638 CCAC
1 CCAC
1642 CACCTTCTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 6 0.25
11 18 0.75
ACGTcount: A:0.19, C:0.67, G:0.06, T:0.08
Consensus pattern (11 bp):
CCACGACCCTC
Left flanking sequence: Indices 1106 -- 1605
GAGCGGTAGCCTCGATCGGTAGCCTCGTACGTCGATCGGTAGCCTCGTATCGGCTCTAACTAACC
AACCTGGTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAACTCAAAGCCTACTCCAA
CAATGCTCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTCTAATCCGTATCCAACC
CTAACATACTTACCTGCCATACCCTACTACCCCACTACCCTACTCACCTAACCTACTCACCTTAC
CTACTCACCTAAACTACTCACCTACCCTATTCATCCCCACTCTTCCACTCTTCATTCTTCCACTC
TTCTACTCTTCCACCATCCCACCTTCCTCCCACCTTCCCACCTTCTTCCCCTTCCCCCTCCGCCC
ACTGCAGAAACGTCATCCCACTCCGCCCCTAAGCCACGCCCACCCACCCCTCGGTTCCCCGCTCG
CCATTGTCCCACCCACCCCATCTTTGTCCTAATTACACCAGTCCT
Right flanking sequence: Indices 1642 -- 2141
CACCTTCTCCTCCACCATCTCGTAAACCCATCCCAAAACACCCAAACACCCCCCCAGCACTCCTG
GCGCACCCCACCCACTGCAACGTGACACTCCACCCATGCAGACTTTTCCCAACCGTTTTAGGCCC
GTTTGCACCCACCTTATTGGCCGGTGGCCCAATTGCCCGATTGGGACACCGGGCCCTCACAAAGG
ACCCTAAAATTAGCGGGCTGGGTGGTCCGGCCCACCCGCCAGCCGCAAAACCACCGCGGCCACAG
AGCCCCCGCGTGCGCCTGCACCCGCCTCGCGGCCGTGGTGTCGCAGTGGCCCCACATGAGCCCAT
CTCCACCGGCCCTCGCTGGTCCACGCGAGGCCCACGCACTGCCACCCGCCGGAACCACGCCAAAC
CTTCGCCGTGCACCGCTACAAAAACCACCGCGCCCCCCAAAAGCCCCGTGTCGCCACCACGCCAC
CCGCGGGTGCCAAGCCCGCGCCCGCTAAGCGAGATTGACGGCTTT
Found at i:1642 original size:11 final size:11
Alignment explanation
Indices: 1612--1645 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
1602 TCCTCCACGA
*
1612 CCTCCCACGAC
1 CCTCCCACCAC
1623 CCTCCCACCAC
1 CCTCCCACCAC
1634 CCTCCCACCAC
1 CCTCCCACCAC
1645 C
1 C
1646 TTCTCCTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.71, G:0.03, T:0.09
Consensus pattern (11 bp):
CCTCCCACCAC
Left flanking sequence: Indices 1112 -- 1611
TAGCCTCGATCGGTAGCCTCGTACGTCGATCGGTAGCCTCGTATCGGCTCTAACTAACCAACCTG
GTGGCTTAGGCACCCACTCCCAACCCGATCCGACCATTTCAACTCAAAGCCTACTCCAACAATGC
TCGCTGTAGCCTCCGTTACGCACCCAACGCCCTTACCTTTCTCTAATCCGTATCCAACCCTAACA
TACTTACCTGCCATACCCTACTACCCCACTACCCTACTCACCTAACCTACTCACCTTACCTACTC
ACCTAAACTACTCACCTACCCTATTCATCCCCACTCTTCCACTCTTCATTCTTCCACTCTTCTAC
TCTTCCACCATCCCACCTTCCTCCCACCTTCCCACCTTCTTCCCCTTCCCCCTCCGCCCACTGCA
GAAACGTCATCCCACTCCGCCCCTAAGCCACGCCCACCCACCCCTCGGTTCCCCGCTCGCCATTG
TCCCACCCACCCCATCTTTGTCCTAATTACACCAGTCCTCCACGA
Right flanking sequence: Indices 1646 -- 2145
TTCTCCTCCACCATCTCGTAAACCCATCCCAAAACACCCAAACACCCCCCCAGCACTCCTGGCGC
ACCCCACCCACTGCAACGTGACACTCCACCCATGCAGACTTTTCCCAACCGTTTTAGGCCCGTTT
GCACCCACCTTATTGGCCGGTGGCCCAATTGCCCGATTGGGACACCGGGCCCTCACAAAGGACCC
TAAAATTAGCGGGCTGGGTGGTCCGGCCCACCCGCCAGCCGCAAAACCACCGCGGCCACAGAGCC
CCCGCGTGCGCCTGCACCCGCCTCGCGGCCGTGGTGTCGCAGTGGCCCCACATGAGCCCATCTCC
ACCGGCCCTCGCTGGTCCACGCGAGGCCCACGCACTGCCACCCGCCGGAACCACGCCAAACCTTC
GCCGTGCACCGCTACAAAAACCACCGCGCCCCCCAAAAGCCCCGTGTCGCCACCACGCCACCCGC
GGGTGCCAAGCCCGCGCCCGCTAAGCGAGATTGACGGCTTTTTCG
Found at i:2654 original size:20 final size:19
Alignment explanation
Indices: 2609--2654 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
2599 ATAACCCTCC
*
2609 CCGCCACCTCCCCGCGCGA
1 CCGCCACCTCCCCGCCCGA
* *
2628 CCACCACCTCCTCCGCCCGG
1 CCGCCACCTCC-CCGCCCGA
2648 CCGCCAC
1 CCGCCAC
2655 TGACCCCGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.11, C:0.65, G:0.17, T:0.07
Consensus pattern (19 bp):
CCGCCACCTCCCCGCCCGA
Left flanking sequence: Indices 2109 -- 2608
AGCCCGCGCCCGCTAAGCGAGATTGACGGCTTTTTCGCTGCTGGAGATGGCCCCATCCCCGGTGA
CGTCACCGTGCCCAGGTAGTCCGTAAATAATTGCCGTTGGCGCGGGTGTGCTGCCAGGGCTCCGG
GCCGGAAAAGGGGGTCCGGCGGCGGGTTCCCGGCACGGCGCGGCGCGCGCTCGGTCGCTGGGCCC
TCCCCTTTTCGAAGGTGTTCTCTTTTTGCCGCTGGCTTGTGGCCTGGGGTCAGTTGCTAATTATA
ATCCTGGGGCCCCCCTGTGGTGGTGTGCGCGCCGGGCTCGCAACCCGGGAGGTGCCACGTGACCA
GCACCACTGCGCCGACTTCACCGGTTTCAAGCCTCAAAACGCAATCGTTCACCTCACCTCCCGGG
CACCTCTCCCCCCTAGTTTGCACTGTTGCACCGCGTGTTCTCTCCAAGTCCCCCTCACGCCCCCC
TCTGCATTTGCCCCGGCAGTTGTGTTGTTCTAAATATAACCCTCC
Right flanking sequence: Indices 2655 -- 3154
TGACCCCGGCCGCTCTCCGCACAGGCACCTCCCACGCACCGACCAAGGTCGCCCCGTCCCCACCC
GGGCCCCCTCGACGACTGTTTGCTAGCCGTCGACCCCGCTGATTGCCCACTGTTGGACCGTTGGC
CCGTTGGCCTCAGTGCTTCTGACCGAATTGGTAGCTATCTGAGCCTTAGTTCAGAGCATAGTTGA
GCACAGCTTGAGGACACTTTTGAGCATAGCTTGAGCATAGATTCAGCTTTGAACAGCCTAAGCTT
CAGTTTTTGAGCATAGTTTCAGCTTTTGGACAGCTTCAGCTTAACAGCTTAAGCTTCATTGACCT
CATTCTCTGACTTTTTCAGTCTCGACTTTCAGTCTCGACTCTTACAGTCTCAACTTATCCAGTCT
CTGACCACCTCTGACTTAACCGGTGTCCTAATCTCGAGTCCCGACTCCTCCCGACTCCTCCCGAC
ACCCAAGTTCAGAGTTCCTCCCCTCCGAACCTCCTCCCCCGTACC
Found at i:3008 original size:15 final size:15
Alignment explanation
Indices: 2983--3045 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
2973 TTGACCTCAT
2983 TCTCTGACTTTTTCAG
1 TCTC-GACTTTTTCAG
2999 TCTCGAC--TTTCAG
1 TCTCGACTTTTTCAG
* *
3012 TCTCGACTCTTACAG
1 TCTCGACTTTTTCAG
* * *
3027 TCTCAACTTATCCAG
1 TCTCGACTTTTTCAG
3042 TCTC
1 TCTC
3046 TGACCACCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 13 0.32
15 23 0.57
16 4 0.10
ACGTcount: A:0.17, C:0.32, G:0.11, T:0.40
Consensus pattern (15 bp):
TCTCGACTTTTTCAG
Left flanking sequence: Indices 2483 -- 2982
CACCTCACCTCCCGGGCACCTCTCCCCCCTAGTTTGCACTGTTGCACCGCGTGTTCTCTCCAAGT
CCCCCTCACGCCCCCCTCTGCATTTGCCCCGGCAGTTGTGTTGTTCTAAATATAACCCTCCCCGC
CACCTCCCCGCGCGACCACCACCTCCTCCGCCCGGCCGCCACTGACCCCGGCCGCTCTCCGCACA
GGCACCTCCCACGCACCGACCAAGGTCGCCCCGTCCCCACCCGGGCCCCCTCGACGACTGTTTGC
TAGCCGTCGACCCCGCTGATTGCCCACTGTTGGACCGTTGGCCCGTTGGCCTCAGTGCTTCTGAC
CGAATTGGTAGCTATCTGAGCCTTAGTTCAGAGCATAGTTGAGCACAGCTTGAGGACACTTTTGA
GCATAGCTTGAGCATAGATTCAGCTTTGAACAGCCTAAGCTTCAGTTTTTGAGCATAGTTTCAGC
TTTTGGACAGCTTCAGCTTAACAGCTTAAGCTTCATTGACCTCAT
Right flanking sequence: Indices 3046 -- 3545
TGACCACCTCTGACTTAACCGGTGTCCTAATCTCGAGTCCCGACTCCTCCCGACTCCTCCCGACA
CCCAAGTTCAGAGTTCCTCCCCTCCGAACCTCCTCCCCCGTACCCTCTGCGTACGACCAAACCCC
AGGCTACCCCAAGCTACCCTTAGCTACCCTTAGCTACCCCAAGCTAGTCAAGTTTCCCCCAAGCT
ACACTAGCCACCCCAGCTACCACGTAGCTCCCCACCCCGCACATCTCCCCCACCCAAACACACAT
CCACCATGGGCCGGAGAAAAATCGAGATCCAGCCGCTCACCGACGACCGCAACCGCACCGTCACC
TTCGTCAAGCGCAAGGCCGGCCTCTTCAAGAAGGCCCACGAGCTCGCGGTGCTCTGCCAGGTCGA
CCTCGCGGTGATCATCGTCGGGTCCAACAAAAAAATCTACGAGTTTTCGCTGGTGGACCCGGACG
AGCTCATCCTGACCTACCAGCAGAAGAAGATGAAGGTGTACGAGC
Found at i:3098 original size:10 final size:10
Alignment explanation
Indices: 3083--3109 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
3073 TAATCTCGAG
3083 TCCCGACTCC
1 TCCCGACTCC
3093 TCCCGACTCC
1 TCCCGACTCC
3103 TCCCGAC
1 TCCCGAC
3110 ACCCAAGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.59, G:0.11, T:0.19
Consensus pattern (10 bp):
TCCCGACTCC
Left flanking sequence: Indices 2583 -- 3082
TTGTGTTGTTCTAAATATAACCCTCCCCGCCACCTCCCCGCGCGACCACCACCTCCTCCGCCCGG
CCGCCACTGACCCCGGCCGCTCTCCGCACAGGCACCTCCCACGCACCGACCAAGGTCGCCCCGTC
CCCACCCGGGCCCCCTCGACGACTGTTTGCTAGCCGTCGACCCCGCTGATTGCCCACTGTTGGAC
CGTTGGCCCGTTGGCCTCAGTGCTTCTGACCGAATTGGTAGCTATCTGAGCCTTAGTTCAGAGCA
TAGTTGAGCACAGCTTGAGGACACTTTTGAGCATAGCTTGAGCATAGATTCAGCTTTGAACAGCC
TAAGCTTCAGTTTTTGAGCATAGTTTCAGCTTTTGGACAGCTTCAGCTTAACAGCTTAAGCTTCA
TTGACCTCATTCTCTGACTTTTTCAGTCTCGACTTTCAGTCTCGACTCTTACAGTCTCAACTTAT
CCAGTCTCTGACCACCTCTGACTTAACCGGTGTCCTAATCTCGAG
Right flanking sequence: Indices 3110 -- 3609
ACCCAAGTTCAGAGTTCCTCCCCTCCGAACCTCCTCCCCCGTACCCTCTGCGTACGACCAAACCC
CAGGCTACCCCAAGCTACCCTTAGCTACCCTTAGCTACCCCAAGCTAGTCAAGTTTCCCCCAAGC
TACACTAGCCACCCCAGCTACCACGTAGCTCCCCACCCCGCACATCTCCCCCACCCAAACACACA
TCCACCATGGGCCGGAGAAAAATCGAGATCCAGCCGCTCACCGACGACCGCAACCGCACCGTCAC
CTTCGTCAAGCGCAAGGCCGGCCTCTTCAAGAAGGCCCACGAGCTCGCGGTGCTCTGCCAGGTCG
ACCTCGCGGTGATCATCGTCGGGTCCAACAAAAAAATCTACGAGTTTTCGCTGGTGGACCCGGAC
GAGCTCATCCTGACCTACCAGCAGAAGAAGATGAAGGTGTACGAGCTGAAGGGGCCCGAGAACTA
CGGCAACTACGTGCGCAAGCACTACCTCCACGAGCCGCTAACCCA
Found at i:3186 original size:10 final size:10
Alignment explanation
Indices: 3171--3221 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
3161 GTACGACCAA
*
3171 ACCCCAGGCT
1 ACCCCAAGCT
3181 ACCCCAAGCT
1 ACCCCAAGCT
**
3191 ACCCTTAGCT
1 ACCCCAAGCT
**
3201 ACCCTTAGCT
1 ACCCCAAGCT
3211 ACCCCAAGCT
1 ACCCCAAGCT
3221 A
1 A
3222 GTCAAGTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 36 1.00
ACGTcount: A:0.25, C:0.45, G:0.12, T:0.18
Consensus pattern (10 bp):
ACCCCAAGCT
Left flanking sequence: Indices 2671 -- 3170
CCGCACAGGCACCTCCCACGCACCGACCAAGGTCGCCCCGTCCCCACCCGGGCCCCCTCGACGAC
TGTTTGCTAGCCGTCGACCCCGCTGATTGCCCACTGTTGGACCGTTGGCCCGTTGGCCTCAGTGC
TTCTGACCGAATTGGTAGCTATCTGAGCCTTAGTTCAGAGCATAGTTGAGCACAGCTTGAGGACA
CTTTTGAGCATAGCTTGAGCATAGATTCAGCTTTGAACAGCCTAAGCTTCAGTTTTTGAGCATAG
TTTCAGCTTTTGGACAGCTTCAGCTTAACAGCTTAAGCTTCATTGACCTCATTCTCTGACTTTTT
CAGTCTCGACTTTCAGTCTCGACTCTTACAGTCTCAACTTATCCAGTCTCTGACCACCTCTGACT
TAACCGGTGTCCTAATCTCGAGTCCCGACTCCTCCCGACTCCTCCCGACACCCAAGTTCAGAGTT
CCTCCCCTCCGAACCTCCTCCCCCGTACCCTCTGCGTACGACCAA
Right flanking sequence: Indices 3222 -- 3721
GTCAAGTTTCCCCCAAGCTACACTAGCCACCCCAGCTACCACGTAGCTCCCCACCCCGCACATCT
CCCCCACCCAAACACACATCCACCATGGGCCGGAGAAAAATCGAGATCCAGCCGCTCACCGACGA
CCGCAACCGCACCGTCACCTTCGTCAAGCGCAAGGCCGGCCTCTTCAAGAAGGCCCACGAGCTCG
CGGTGCTCTGCCAGGTCGACCTCGCGGTGATCATCGTCGGGTCCAACAAAAAAATCTACGAGTTT
TCGCTGGTGGACCCGGACGAGCTCATCCTGACCTACCAGCAGAAGAAGATGAAGGTGTACGAGCT
GAAGGGGCCCGAGAACTACGGCAACTACGTGCGCAAGCACTACCTCCACGAGCCGCTAACCCAGG
GCGCCGGGGGCGGCGCCTACGACGACGAGCTGCTGGAGGAGCTGGAGCCGTCGCTGGCCCACGAC
GCCAAGCGGCCCAAGCTCGACCCCGACGCCAAGGTGAGCCAGCAG
Found at i:3924 original size:18 final size:18
Alignment explanation
Indices: 3901--3935 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3891 CGGCGCTGGC
3901 CGCGCCCCCGGGCCCCGG
1 CGCGCCCCCGGGCCCCGG
*
3919 CGCGCCCCCGGGGCCCG
1 CGCGCCCCCGGGCCCCG
3936 CCACGGGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.60, G:0.40, T:0.00
Consensus pattern (18 bp):
CGCGCCCCCGGGCCCCGG
Left flanking sequence: Indices 3401 -- 3900
AAGGCCCACGAGCTCGCGGTGCTCTGCCAGGTCGACCTCGCGGTGATCATCGTCGGGTCCAACAA
AAAAATCTACGAGTTTTCGCTGGTGGACCCGGACGAGCTCATCCTGACCTACCAGCAGAAGAAGA
TGAAGGTGTACGAGCTGAAGGGGCCCGAGAACTACGGCAACTACGTGCGCAAGCACTACCTCCAC
GAGCCGCTAACCCAGGGCGCCGGGGGCGGCGCCTACGACGACGAGCTGCTGGAGGAGCTGGAGCC
GTCGCTGGCCCACGACGCCAAGCGGCCCAAGCTCGACCCCGACGCCAAGGTGAGCCAGCAGCCCA
TCATTCCCTACCGCCACCTGAAGCTGGACCTGGTGGGGCTGAAGCTGGAGGTGCCCCAGTTGCTG
GTGCTGACCCAGCCCCCGGCGCCCCAGCGCCCCGTGCTCCGGGTGCAGATCCCCTCCGACGCCCC
GAAGGAGGGGCCCGACCTGGGCAAGACCATCACCGCGGCGCTGGC
Right flanking sequence: Indices 3936 -- 4435
CCACGGGGTCGGCCCCGAAAAACCTCGCGCCGCCCCACTTGAACAAGTACCCCAACTACACCCCG
TTCCGGTCCCCGGACTCGCGCAAGCCCCCGGTGTTGCTCCCGATCCACGCAGGCAAGTCGCAGCT
GTTGCTGCCGCTGGACGCCTCCGCCCCCGCCCCGCAGTACTACCAGGGCCAGCCCGCGGTGGGGG
CCCAGCAGCTGCCGCTGACGATCTTGCCCACCCCGGTGCTCAACCAGGTGTTCTCGGGGGCTGTG
CCGGGGCAGCCGGGGCAGTACCAGCGGTACGGCGACCAGCAGCAGACCCCCGTGGCACTAAAGTA
CGCGCTGGGCGAGTTGTTCCCGCTGCCGCTGGCGTTCTACGCGCCCCAGGACTGGCCGCAGCTAC
CGACGGGGATCACCCCGGTGACGCTGCACCCGTACCCGCCGCCGCCGGGAGGCACCTCCTCCCAG
GGCGGGGGCCCGGCGCCGCCGCCGCCCCCACTACTGGCGCTGCTG
Found at i:4688 original size:12 final size:12
Alignment explanation
Indices: 4671--4714 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
4661 GTTGTTGTAG
4671 TTGGTTGGGTAT
1 TTGGTTGGGTAT
4683 TTGGTTGGGTAT
1 TTGGTTGGGTAT
* *
4695 TTGGTTGAGTGT
1 TTGGTTGGGTAT
4707 TTGGTTGG
1 TTGGTTGG
4715 ATTACACACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.07, C:0.00, G:0.43, T:0.50
Consensus pattern (12 bp):
TTGGTTGGGTAT
Left flanking sequence: Indices 4171 -- 4670
CAACCAGGTGTTCTCGGGGGCTGTGCCGGGGCAGCCGGGGCAGTACCAGCGGTACGGCGACCAGC
AGCAGACCCCCGTGGCACTAAAGTACGCGCTGGGCGAGTTGTTCCCGCTGCCGCTGGCGTTCTAC
GCGCCCCAGGACTGGCCGCAGCTACCGACGGGGATCACCCCGGTGACGCTGCACCCGTACCCGCC
GCCGCCGGGAGGCACCTCCTCCCAGGGCGGGGGCCCGGCGCCGCCGCCGCCCCCACTACTGGCGC
TGCTGGTGGGGCCGCCGCTGGCGTTCCCCAACCTGGCAACCTTCCAGAACTTCGGGCGCACGGTG
CAGGCGGTGCAGAACCGCGACCTGTTCCCGCTGCCGCTCCAGTTCAGCAGTTTTAATAGTGACAA
GGAGAAGTAGTAATGCAATGCGATGAAAGGAGGTGGTTGTTAGTTGTGGTTGCCCACGTTAATTA
GGTAATACAGAGTGTTTGAAGGTAAGTAGGGGGTGGTTGTTGTAG
Right flanking sequence: Indices 4715 -- 5214
ATTACACACAGATTGTTTAAAGCTTCTATTTTGTAGATTGCTTTTGACGTGGGCTGGGGTCGAAG
CCGGCTAAATCGTCGTTGGCAGCCGTTGAGATGGTTTGGGGTATTTTTAGCAACTTGTGCTATAT
TTAGAGAAAAGGGGAAAAGGGGAGAAAGAAAGGGGGAGGAGAGGGGAGAGAAGGGGTAGGGGAGA
GGAAAGAGAGGGCGTCGGTGGGAGATGGAGAGAGTGGAGAGAGGGAAGGAGATGAGGGGAGGAGT
GGTAGGGTGATTTCAAAGAACGAGAAGATTGGGTGAAGGGTTGGTAGGTGTAGTGGTTCGAATGG
TAGGGTTGGCCATTACATAGAGCCATCGGATTGATTCAAAGTGTAGACCAGAAGAATCGTCGATA
GCTTGAATAGATACTAGCTTTCAAGTACTGGGATTCGTTGAAACAATTCGCGGCCTTAAAGGCAT
GACGTTGAGGTTGGATATTGCTGATGATAATACCCGTGAAACAGC
Found at i:5663 original size:10 final size:10
Alignment explanation
Indices: 5650--5700 Score: 66
Period size: 10 Copynumber: 5.1 Consensus size: 10
5640 CACATAGTAG
*
5650 CACATTGGCA
1 CACACTGGCA
5660 CACACTGGCA
1 CACACTGGCA
*
5670 CAGACTGGCA
1 CACACTGGCA
*
5680 CAGACTGGCA
1 CACACTGGCA
*
5690 CAGACTGGCA
1 CACACTGGCA
5700 C
1 C
5701 CAAGAGAGTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.12
Consensus pattern (10 bp):
CACACTGGCA
Left flanking sequence: Indices 5150 -- 5649
ATTCGCGGCCTTAAAGGCATGACGTTGAGGTTGGATATTGCTGATGATAATACCCGTGAAACAGC
GTACCCTAAGTATTGTGGCAAAGAACCGGAGACACAGTGTAGTTGAATTGTGATTCAGCTCAAGA
CGCTCCAATAGAGACATAACCTGTATTCGAAGATTGGCTAGAGTCTAACAAGAACCTTAGTGAAT
TGACCAAGTAAAAAAGCAACGTTGGAGATTCGGTGATGCCAGGGTCAAAATCTATAAGCCACTTT
CGTAGCACTTTATTTGAAAGACACGATGGCGTGCGTGGCGAGTGCAACATCGAAAGCATCTGAAC
AACTTGACGTCTGGACTACCTCAGAGACGCAAGCTCTGCAATCAGCCAACAAACCACGAGACCTA
GTGTGTTCCTTAACGTAGGTAGCTTCGAGGTGATCTAACGACCGATTTGGGTAGTGGTTCCATCA
TCAACAACCCGGGCTCGCAACGACGATGTGCCCAGCACATAGTAG
Right flanking sequence: Indices 5701 -- 6200
CAAGAGAGTGAGTAAGCAAACATTGTGTCAATAAAGCTTACTTGACAGATAGACCTGTGCCCGTC
GGCCGAAAGCTCACTTGTGCCCACAACTCGTCAACTCTTTTCAAGCTAAATCGGCCTAGCTATCT
ACGCTGATCTCTACTGAATCTGATGATAACAACTGTATAGCAGTTACAGATCTTGCAACTCTGAT
GGCTGTTTCCTTCTCTACTCCATTCGATAACACGTATAAACACAGCGTTGGGTCACTACACTCTC
ACAGTAGCACACTCAGATACACTAGCCGTGACTTGTGATCCCTACCCCCAAGGACTATGACTTTG
TGAAGCAGAACACCACTATATCTATTGTCCTGAGCAAAGTGTTATAGATTACACCAACTTTTTCA
CACATTCTACAAAAGGTATCCACAATAAACAACTGGTAAACCTCCAACGAAAACCAAACCTAACC
AGTATACCTACTACAAAACTTACACCCAACAGACCACGGTATCTC
Found at i:5678 original size:20 final size:20
Alignment explanation
Indices: 5655--5700 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
5645 AGTAGCACAT
5655 TGGCACACACTGGCACAGAC
1 TGGCACACACTGGCACAGAC
*
5675 TGGCACAGACTGGCACAGAC
1 TGGCACACACTGGCACAGAC
5695 TGGCAC
1 TGGCAC
5701 CAAGAGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.33, G:0.28, T:0.11
Consensus pattern (20 bp):
TGGCACACACTGGCACAGAC
Left flanking sequence: Indices 5155 -- 5654
CGGCCTTAAAGGCATGACGTTGAGGTTGGATATTGCTGATGATAATACCCGTGAAACAGCGTACC
CTAAGTATTGTGGCAAAGAACCGGAGACACAGTGTAGTTGAATTGTGATTCAGCTCAAGACGCTC
CAATAGAGACATAACCTGTATTCGAAGATTGGCTAGAGTCTAACAAGAACCTTAGTGAATTGACC
AAGTAAAAAAGCAACGTTGGAGATTCGGTGATGCCAGGGTCAAAATCTATAAGCCACTTTCGTAG
CACTTTATTTGAAAGACACGATGGCGTGCGTGGCGAGTGCAACATCGAAAGCATCTGAACAACTT
GACGTCTGGACTACCTCAGAGACGCAAGCTCTGCAATCAGCCAACAAACCACGAGACCTAGTGTG
TTCCTTAACGTAGGTAGCTTCGAGGTGATCTAACGACCGATTTGGGTAGTGGTTCCATCATCAAC
AACCCGGGCTCGCAACGACGATGTGCCCAGCACATAGTAGCACAT
Right flanking sequence: Indices 5701 -- 6200
CAAGAGAGTGAGTAAGCAAACATTGTGTCAATAAAGCTTACTTGACAGATAGACCTGTGCCCGTC
GGCCGAAAGCTCACTTGTGCCCACAACTCGTCAACTCTTTTCAAGCTAAATCGGCCTAGCTATCT
ACGCTGATCTCTACTGAATCTGATGATAACAACTGTATAGCAGTTACAGATCTTGCAACTCTGAT
GGCTGTTTCCTTCTCTACTCCATTCGATAACACGTATAAACACAGCGTTGGGTCACTACACTCTC
ACAGTAGCACACTCAGATACACTAGCCGTGACTTGTGATCCCTACCCCCAAGGACTATGACTTTG
TGAAGCAGAACACCACTATATCTATTGTCCTGAGCAAAGTGTTATAGATTACACCAACTTTTTCA
CACATTCTACAAAAGGTATCCACAATAAACAACTGGTAAACCTCCAACGAAAACCAAACCTAACC
AGTATACCTACTACAAAACTTACACCCAACAGACCACGGTATCTC
Found at i:7519 original size:27 final size:27
Alignment explanation
Indices: 7489--7555 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
7479 AGAAGACGTG
*
7489 ACGAAAGAAGGGAGAAGACGCGAGGAT
1 ACGAAAGAAGGGAGAAGACGAGAGGAT
* *
7516 ACGATAGAAGGGAGAATACGAGAGGAT
1 ACGAAAGAAGGGAGAAGACGAGAGGAT
*
7543 ACGAAGGAAGGGA
1 ACGAAAGAAGGGA
7556 AAACGGGAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.45, C:0.09, G:0.40, T:0.06
Consensus pattern (27 bp):
ACGAAAGAAGGGAGAAGACGAGAGGAT
Left flanking sequence: Indices 6989 -- 7488
AAGTTCTTCGGTCTTTCCAAGGAGGACGACGTCCGTGAGTACGTTGTGCGCCGCGAGATCGTCAA
GGGTGACAAGACCTACACCAAGGCCCCCAAGATCCAGAGATTGATCACCCCCCAGCGTTTGCAGC
GCAAGAGACAGGAGAAGGAGAAGAAGATCAAGAACGCCCAGCACCAGCGCGACTTGGCCAACGAG
TACGCCCAGTTGTTGGCCAAGAGATTGCAGGAGAGAAAGGAGCACACCCAGGTCAAGAAGGCCAG
AGCCGCTTCTTTGCGTGCCGCCTCGCAGTAAGCGGTGGAGTTGTTAATATAGTGTATACTGTAAT
GGATAGAAAAGAAACTGAGACTGAGAGGGTGGAAGGGAAGAGGGTGATTGGGTGTATAGTGGTCG
GGTGTCCCGATCGGGCAACTGTCCGTCGCGACCAGTATTTTGTAGGTGGTAGAGGAGGAGGAGAG
AGGAGGAAAGAGGACGGAAGGATTGGCAAGGAGGGAGAAGACGTG
Right flanking sequence: Indices 7556 -- 8055
AAACGGGAGGTTACGCAAAATGGGAACGGGTGGAGATTTAAGGAATGAGAAGCGTGGGAAGCGAT
CGAATAAAGTCTAAGTTCCGTCTTGAGATCTTACTACTGGCAATCCACTCAGGGTAGGCCAGTGT
ACCACGGTATTTGCATATCTAAACCAGCAACCGTCTCTCTATACAATGTAACTCTTCGATACATT
TTCATGCCATAGCCAAGTCTTAAGTTATCTACACTTCATGTCTTGTATTCTTCATATTTGTTGCT
TTACACCACACAGTCACTCTTCCTCTCCAACAGTGGCCTCACTCTTGGCAACTTCCCGGTGGCAG
TCCGCGTGCAACTCCTTTAGTGCTTTCAGAACCCTCTTATGATAGTAAAAATCCACAATCTTGAA
TTCCATCAGCTTGGAAAAAGACTCCGCTTGCTTTATAACCTTTGCACGAGTGTCAAGTTGTTTGA
TTCTTTGAAGCAGACGAAGCAACAAGCGCTTCTTGACACTGTAGT
Found at i:8867 original size:11 final size:11
Alignment explanation
Indices: 8836--8885 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
8826 TTTGCAATAA
8836 TTTGCAA-CAT
1 TTTGCAACCAT
* *
8846 TTCGCATCCAT
1 TTTGCAACCAT
8857 TTTGCAACCAT
1 TTTGCAACCAT
*
8868 TTTGCAGCCAT
1 TTTGCAACCAT
*
8879 TTCGCAA
1 TTTGCAA
8886 ACACATAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 5 0.16
11 27 0.84
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (11 bp):
TTTGCAACCAT
Left flanking sequence: Indices 8336 -- 8835
GTGACTCTGTTTCTCGTCCGCCTGAGCCAACAAGTACCGCTGGGCGTGCAAAGCCATCAAGATCC
GGCTGCGGTTGCGCCGGGCGTTGCCCACCATGCGCTGGTAGCTTCGTTTCCACCGCCAGTTGGTG
CGGTGGCCCCTGCGAAACACCGCCAACATTGTCTTGGTGGCGCGGTCGTGGTTGTAGAGTTCTTT
CTCAAGCCAGGCCACCTCGGTGGCAGAGCCAGAGGGCGCGCTGAGACAAGAAGCGGTTTCAAAAC
GGGCCATAATGGTGTCGTCACTCTCGATGTGTGGTGGGTTGTCACTTTCGGTGTGCTTTTATATT
GACAATACGTCTATGACCTATCCACCAGTTGCCTATAAAAGTAGAGAAACTGCAAGAAAACCAAG
GAGTCTCTAGATTCTCCTTTTCGCAACTCGTACTGTATTTTCCAGTCTCCACCCGTCTTTTAGCC
ATATTTCCCATTACGGTTTGCCCCTGAAATCTCCCTTTGCAATAA
Right flanking sequence: Indices 8886 -- 9385
ACACATAAAAACCATCCACCCGTCTACGATCCACAGAACCTACCCATACTATATGCTCTGTTCTT
GACTATCTATACGCTATTCTCTCTTCTTGCCTACCTATACCCTAGACTCTCTTCGTACCTATCTA
TACTCTCTACTCTCTTTTTGCCTACCTATACTCTATACTCTCTTCTTGAATCTATATTCTATACT
CTCTTCGTACTAATCTATGCGCTATACTCTCTTCCTGCCTATACTCTCTTGCCTCCCTGCCCTAT
ACCCTCTTCTTAGCTGTCTCCACCGGCACCGCCCGCATCACCTCGCACACGATCCAGCAGTTGGT
CAAGAAGAACGCAATCGCCAGGTAAAACAACGTGGTGTCAAACGTCAGCTGGCCCAAAAACTCGA
GGTTGTACGCCTGGGACAACCACGCGCCCTGGGTCGCCACCCACGCCACCACCATCGCCCCGCCC
TTGGCCCACCCAATCGGGGTCTCCTGCAAGAGCCCAGGCAAAAAA
Found at i:8878 original size:22 final size:21
Alignment explanation
Indices: 8836--8885 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
8826 TTTGCAATAA
*
8836 TTTGCAACATTTCGCATCCAT
1 TTTGCAACATTTCGCAGCCAT
*
8857 TTTGCAACCATTTTGCAGCCAT
1 TTTGCAA-CATTTCGCAGCCAT
*
8879 TTCGCAA
1 TTTGCAA
8886 ACACATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (21 bp):
TTTGCAACATTTCGCAGCCAT
Left flanking sequence: Indices 8336 -- 8835
GTGACTCTGTTTCTCGTCCGCCTGAGCCAACAAGTACCGCTGGGCGTGCAAAGCCATCAAGATCC
GGCTGCGGTTGCGCCGGGCGTTGCCCACCATGCGCTGGTAGCTTCGTTTCCACCGCCAGTTGGTG
CGGTGGCCCCTGCGAAACACCGCCAACATTGTCTTGGTGGCGCGGTCGTGGTTGTAGAGTTCTTT
CTCAAGCCAGGCCACCTCGGTGGCAGAGCCAGAGGGCGCGCTGAGACAAGAAGCGGTTTCAAAAC
GGGCCATAATGGTGTCGTCACTCTCGATGTGTGGTGGGTTGTCACTTTCGGTGTGCTTTTATATT
GACAATACGTCTATGACCTATCCACCAGTTGCCTATAAAAGTAGAGAAACTGCAAGAAAACCAAG
GAGTCTCTAGATTCTCCTTTTCGCAACTCGTACTGTATTTTCCAGTCTCCACCCGTCTTTTAGCC
ATATTTCCCATTACGGTTTGCCCCTGAAATCTCCCTTTGCAATAA
Right flanking sequence: Indices 8886 -- 9385
ACACATAAAAACCATCCACCCGTCTACGATCCACAGAACCTACCCATACTATATGCTCTGTTCTT
GACTATCTATACGCTATTCTCTCTTCTTGCCTACCTATACCCTAGACTCTCTTCGTACCTATCTA
TACTCTCTACTCTCTTTTTGCCTACCTATACTCTATACTCTCTTCTTGAATCTATATTCTATACT
CTCTTCGTACTAATCTATGCGCTATACTCTCTTCCTGCCTATACTCTCTTGCCTCCCTGCCCTAT
ACCCTCTTCTTAGCTGTCTCCACCGGCACCGCCCGCATCACCTCGCACACGATCCAGCAGTTGGT
CAAGAAGAACGCAATCGCCAGGTAAAACAACGTGGTGTCAAACGTCAGCTGGCCCAAAAACTCGA
GGTTGTACGCCTGGGACAACCACGCGCCCTGGGTCGCCACCCACGCCACCACCATCGCCCCGCCC
TTGGCCCACCCAATCGGGGTCTCCTGCAAGAGCCCAGGCAAAAAA
Found at i:8977 original size:28 final size:28
Alignment explanation
Indices: 8931--9114 Score: 160
Period size: 28 Copynumber: 6.6 Consensus size: 28
8921 GAACCTACCC
* * *
8931 ATACTATATGCTCTGTTCTTGACTATCT
1 ATACTCTATACTCTCTTCTTGACTATCT
* * * *
8959 ATACGCTATTCTCTCTTCTTGCCTACCT
1 ATACTCTATACTCTCTTCTTGACTATCT
* * *
8987 ATACCCTAGACTCTCTTCGT-ACCTATCT
1 ATACTCTATACTCTCTTCTTGA-CTATCT
* * * *
9015 ATACTCTCTACTCTCTTTTTGCCTACCT
1 ATACTCTATACTCTCTTCTTGACTATCT
9043 ATACTCTATACTCTCTTCTTGA--ATCT
1 ATACTCTATACTCTCTTCTTGACTATCT
* *
9069 ATATTCTATACTCTCTTCGT-ACTAATCT
1 ATACTCTATACTCTCTTCTTGACT-ATCT
* *
9097 ATGCGCTATACTCTCTTC
1 ATACTCTATACTCTCTTC
9115 CTGCCTATAC
Statistics
Matches: 123, Mismatches: 28, Indels: 10
0.76 0.17 0.06
Matches are distributed among these distances:
25 1 0.01
26 21 0.17
28 101 0.82
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (28 bp):
ATACTCTATACTCTCTTCTTGACTATCT
Left flanking sequence: Indices 8431 -- 8930
TGCGCTGGTAGCTTCGTTTCCACCGCCAGTTGGTGCGGTGGCCCCTGCGAAACACCGCCAACATT
GTCTTGGTGGCGCGGTCGTGGTTGTAGAGTTCTTTCTCAAGCCAGGCCACCTCGGTGGCAGAGCC
AGAGGGCGCGCTGAGACAAGAAGCGGTTTCAAAACGGGCCATAATGGTGTCGTCACTCTCGATGT
GTGGTGGGTTGTCACTTTCGGTGTGCTTTTATATTGACAATACGTCTATGACCTATCCACCAGTT
GCCTATAAAAGTAGAGAAACTGCAAGAAAACCAAGGAGTCTCTAGATTCTCCTTTTCGCAACTCG
TACTGTATTTTCCAGTCTCCACCCGTCTTTTAGCCATATTTCCCATTACGGTTTGCCCCTGAAAT
CTCCCTTTGCAATAATTTGCAACATTTCGCATCCATTTTGCAACCATTTTGCAGCCATTTCGCAA
ACACATAAAAACCATCCACCCGTCTACGATCCACAGAACCTACCC
Right flanking sequence: Indices 9115 -- 9614
CTGCCTATACTCTCTTGCCTCCCTGCCCTATACCCTCTTCTTAGCTGTCTCCACCGGCACCGCCC
GCATCACCTCGCACACGATCCAGCAGTTGGTCAAGAAGAACGCAATCGCCAGGTAAAACAACGTG
GTGTCAAACGTCAGCTGGCCCAAAAACTCGAGGTTGTACGCCTGGGACAACCACGCGCCCTGGGT
CGCCACCCACGCCACCACCATCGCCCCGCCCTTGGCCCACCCAATCGGGGTCTCCTGCAAGAGCC
CAGGCAAAAAAATAAGGAACCAGATGAAATACTGCGACGTCATCACCTTGTTGAACGTAACAAAC
GTGAATGTCTGCAAAAAGAGGCACGTCTGGAGCCTCAGCCAGAACACAAGCGGGATAACCACCCC
CGAAAGCACGAGCTGGGGCACAAACGCCACCAGCTCCGCAGAGAACGCCCCGCCCACAGTGTCGG
CCGCCAGCTTGTAGTACAACAACAAGTTCCACACACTGAAGTTGT
Found at i:10732 original size:24 final size:24
Alignment explanation
Indices: 10705--10750 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
10695 AGCTTGGACA
10705 CCACCAGCCAGGCACCGGAGGGTT
1 CCACCAGCCAGGCACCGGAGGGTT
*
10729 CCACCAGCCAGGCCCCGGAGGG
1 CCACCAGCCAGGCACCGGAGGG
10751 CACCGCCCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.20, C:0.41, G:0.35, T:0.04
Consensus pattern (24 bp):
CCACCAGCCAGGCACCGGAGGGTT
Left flanking sequence: Indices 10205 -- 10704
GCCATGTGGGCGTCCTGGTAGAGCCCGAACGCGAAGAACGCGAGGCGGACCACGGTGGCCACCAC
CAACAATTGGGCAAACCGAGGCTCCATGTTGACGCGTTGGTGCGAAACGATCGGTAATGGACCAG
GAAGACGTGTACAAGCAGTTTTTGAACTACGACTTCGGGGCCGACGACGACTTTGTCACGGGTCT
CCAGGAGATCATCGACGGGCACGTCGAGAGCTTGCGCGAGCAGGACCCGCTGGCGACGGTGCTGG
CTGCGGACCGGGCCCAGTTGACGGACCAGGCCAAGGTGTTCTTCTTCTGTCTGAAGACGGGGAAC
ATCTTGGAGTTGGACGAGTACCGGGTGTGGTTGGCCAGGGGGGGCAACCGTTACAAGAAGAGCGG
GCAGATTGAAGAGATTGAGGAGGGGGAGCAGACAGGCGGGGAGCAGACTGCGGAAGGGGAGCAAA
CCCAGGCGGCCATTGGCGATGGCACCAATGCCACCAGCTTGGACA
Right flanking sequence: Indices 10751 -- 11250
CACCGCCCCCTACAGTTCCAACTACCAGAACGTGGTCGAGCTCATCTTGGCCGGGAAGGAGGTCC
CGGGGATCAAGGAGATCCCGGACACGGTGTTGCCCGAGCAGCAGAGCGAGGCCCAGGCGAGCCAG
CGCAAGAAGCCGTGGGAGAAGTGAGATTGAAATGACCAGGGATTAAGTAGCCCTAGAATGATTAA
ATGAACTGTAAGGAAGGAGATGGAGAGTGTGGGGTGATGACAGAGTAAAGACAGAGTGTTGGTGA
TGACAGAGTGTGAGGTGATAGAGTGTTCAGTGATAGGGTGTTCAGTGACAGAGTGTTCAGTGACA
GAGTGTTCAGTGACATCCCCAGGGGTTAGTTTTGTCTGTATTTAGTAGGTTTGACCATCGTATGG
TTCCGTACGGTATCTCGAACAGAGCCATAGTGCCCATTCACGTTTCAAGAACCCTGTGAACCAGT
GCTGCTCAGTCAGAACCACCAATCAAACGCTATATATACATGGTC
Found at i:11029 original size:18 final size:17
Alignment explanation
Indices: 10995--11029 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
10985 ACAGAGTAAA
*
10995 GACAGAGTGTTGGTGAT
1 GACAGAGTGTAGGTGAT
11012 GACAGAGTGTGAGGTGAT
1 GACAGAGTGT-AGGTGAT
11030 AGAGTGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.26, C:0.06, G:0.43, T:0.26
Consensus pattern (17 bp):
GACAGAGTGTAGGTGAT
Left flanking sequence: Indices 10495 -- 10994
CCAAGGTGTTCTTCTTCTGTCTGAAGACGGGGAACATCTTGGAGTTGGACGAGTACCGGGTGTGG
TTGGCCAGGGGGGGCAACCGTTACAAGAAGAGCGGGCAGATTGAAGAGATTGAGGAGGGGGAGCA
GACAGGCGGGGAGCAGACTGCGGAAGGGGAGCAAACCCAGGCGGCCATTGGCGATGGCACCAATG
CCACCAGCTTGGACACCACCAGCCAGGCACCGGAGGGTTCCACCAGCCAGGCCCCGGAGGGCACC
GCCCCCTACAGTTCCAACTACCAGAACGTGGTCGAGCTCATCTTGGCCGGGAAGGAGGTCCCGGG
GATCAAGGAGATCCCGGACACGGTGTTGCCCGAGCAGCAGAGCGAGGCCCAGGCGAGCCAGCGCA
AGAAGCCGTGGGAGAAGTGAGATTGAAATGACCAGGGATTAAGTAGCCCTAGAATGATTAAATGA
ACTGTAAGGAAGGAGATGGAGAGTGTGGGGTGATGACAGAGTAAA
Right flanking sequence: Indices 11030 -- 11529
AGAGTGTTCAGTGATAGGGTGTTCAGTGACAGAGTGTTCAGTGACAGAGTGTTCAGTGACATCCC
CAGGGGTTAGTTTTGTCTGTATTTAGTAGGTTTGACCATCGTATGGTTCCGTACGGTATCTCGAA
CAGAGCCATAGTGCCCATTCACGTTTCAAGAACCCTGTGAACCAGTGCTGCTCAGTCAGAACCAC
CAATCAAACGCTATATATACATGGTCTCAACAACGATCTCAACAACGATCTCTCACTACCACACT
CTCGCATTACCATTAGCTCATACACTCGTTCACGGTCTCCTTCGCCTAACTATCTTAACTCTTCA
CGGTCCACTCTTCACACTCACTACACTAACCCGCTTCCATGTTTCTTCTATTCTGAATCTATAGT
CTATAACGAACCAGCGAAGTGTCTCCATTGCTCTAACCCTAGTGCAAGAACCGCATCACCGCCTC
GAAAGCCGCCAACGCCGCGGCGTTCGCCGGGAACGACCGCAAGAT
Found at i:11043 original size:15 final size:15
Alignment explanation
Indices: 11011--11090 Score: 108
Period size: 15 Copynumber: 5.3 Consensus size: 15
11001 GTGTTGGTGA
*
11011 TGACAGAGTG-TGAGG
1 TGACAGAGTGTTCA-G
*
11026 TGATAGAGTGTTCAG
1 TGACAGAGTGTTCAG
* *
11041 TGATAGGGTGTTCAG
1 TGACAGAGTGTTCAG
11056 TGACAGAGTGTTCAG
1 TGACAGAGTGTTCAG
11071 TGACAGAGTGTTCAG
1 TGACAGAGTGTTCAG
11086 TGACA
1 TGACA
11091 TCCCCAGGGG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
15 57 0.97
16 2 0.03
ACGTcount: A:0.26, C:0.10, G:0.36, T:0.28
Consensus pattern (15 bp):
TGACAGAGTGTTCAG
Left flanking sequence: Indices 10511 -- 11010
CTGTCTGAAGACGGGGAACATCTTGGAGTTGGACGAGTACCGGGTGTGGTTGGCCAGGGGGGGCA
ACCGTTACAAGAAGAGCGGGCAGATTGAAGAGATTGAGGAGGGGGAGCAGACAGGCGGGGAGCAG
ACTGCGGAAGGGGAGCAAACCCAGGCGGCCATTGGCGATGGCACCAATGCCACCAGCTTGGACAC
CACCAGCCAGGCACCGGAGGGTTCCACCAGCCAGGCCCCGGAGGGCACCGCCCCCTACAGTTCCA
ACTACCAGAACGTGGTCGAGCTCATCTTGGCCGGGAAGGAGGTCCCGGGGATCAAGGAGATCCCG
GACACGGTGTTGCCCGAGCAGCAGAGCGAGGCCCAGGCGAGCCAGCGCAAGAAGCCGTGGGAGAA
GTGAGATTGAAATGACCAGGGATTAAGTAGCCCTAGAATGATTAAATGAACTGTAAGGAAGGAGA
TGGAGAGTGTGGGGTGATGACAGAGTAAAGACAGAGTGTTGGTGA
Right flanking sequence: Indices 11091 -- 11590
TCCCCAGGGGTTAGTTTTGTCTGTATTTAGTAGGTTTGACCATCGTATGGTTCCGTACGGTATCT
CGAACAGAGCCATAGTGCCCATTCACGTTTCAAGAACCCTGTGAACCAGTGCTGCTCAGTCAGAA
CCACCAATCAAACGCTATATATACATGGTCTCAACAACGATCTCAACAACGATCTCTCACTACCA
CACTCTCGCATTACCATTAGCTCATACACTCGTTCACGGTCTCCTTCGCCTAACTATCTTAACTC
TTCACGGTCCACTCTTCACACTCACTACACTAACCCGCTTCCATGTTTCTTCTATTCTGAATCTA
TAGTCTATAACGAACCAGCGAAGTGTCTCCATTGCTCTAACCCTAGTGCAAGAACCGCATCACCG
CCTCGAAAGCCGCCAACGCCGCGGCGTTCGCCGGGAACGACCGCAAGATCGACGGCACAAACCCC
CGGGTAAACCCCTTGAGGCCCCGCTCGCGGTAGATCGCCCGCACA
Found at i:11266 original size:12 final size:12
Alignment explanation
Indices: 11249--11276 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11239 ATATACATGG
11249 TCTCAACAACGA
1 TCTCAACAACGA
11261 TCTCAACAACGA
1 TCTCAACAACGA
11273 TCTC
1 TCTC
11277 TCACTACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.07, T:0.21
Consensus pattern (12 bp):
TCTCAACAACGA
Left flanking sequence: Indices 10749 -- 11248
GGCACCGCCCCCTACAGTTCCAACTACCAGAACGTGGTCGAGCTCATCTTGGCCGGGAAGGAGGT
CCCGGGGATCAAGGAGATCCCGGACACGGTGTTGCCCGAGCAGCAGAGCGAGGCCCAGGCGAGCC
AGCGCAAGAAGCCGTGGGAGAAGTGAGATTGAAATGACCAGGGATTAAGTAGCCCTAGAATGATT
AAATGAACTGTAAGGAAGGAGATGGAGAGTGTGGGGTGATGACAGAGTAAAGACAGAGTGTTGGT
GATGACAGAGTGTGAGGTGATAGAGTGTTCAGTGATAGGGTGTTCAGTGACAGAGTGTTCAGTGA
CAGAGTGTTCAGTGACATCCCCAGGGGTTAGTTTTGTCTGTATTTAGTAGGTTTGACCATCGTAT
GGTTCCGTACGGTATCTCGAACAGAGCCATAGTGCCCATTCACGTTTCAAGAACCCTGTGAACCA
GTGCTGCTCAGTCAGAACCACCAATCAAACGCTATATATACATGG
Right flanking sequence: Indices 11277 -- 11776
TCACTACCACACTCTCGCATTACCATTAGCTCATACACTCGTTCACGGTCTCCTTCGCCTAACTA
TCTTAACTCTTCACGGTCCACTCTTCACACTCACTACACTAACCCGCTTCCATGTTTCTTCTATT
CTGAATCTATAGTCTATAACGAACCAGCGAAGTGTCTCCATTGCTCTAACCCTAGTGCAAGAACC
GCATCACCGCCTCGAAAGCCGCCAACGCCGCGGCGTTCGCCGGGAACGACCGCAAGATCGACGGC
ACAAACCCCCGGGTAAACCCCTTGAGGCCCCGCTCGCGGTAGATCGCCCGCACAGCGTCGATCCA
CCGAGGGTACTTCTTCTCGGCCCGCACAGGCGAGTCGGTCATGATCGTCTGCTTGACCACGTCCG
CGGGGTAGGCAAAGATCCAGAACACCGTCGCAGACAACCCGCCCGACCAGAAGTTGATGCTGGGC
TTCAGCATCTTGGTGTTGTCCTCGAAGTACCGGGTGAACAACTCG
Found at i:12697 original size:9 final size:9
Alignment explanation
Indices: 12683--12714 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
12673 GGAGCATGTA
12683 GGCTGGGAG
1 GGCTGGGAG
12692 GGCTGGGAG
1 GGCTGGGAG
12701 GGCTGGGAG
1 GGCTGGGAG
12710 GGCTG
1 GGCTG
12715 TGAGTGGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.09, C:0.12, G:0.66, T:0.12
Consensus pattern (9 bp):
GGCTGGGAG
Left flanking sequence: Indices 12183 -- 12682
CCACGGGGCCCAGGAACCGGCCCGTGGGCGCCGTCTGGAGCCGCACCTTGATGGTGTCGAAGGGA
TGGCCCACGGCGTTCTTCATCACCCCCAGGAACATCCCGGCGACAAAGCCAATGTACTTGGGGGG
AGCCTCGGGCTTGTGCTCGAGCTGGAGATCGATGATGTCCTCTTCTTTGTCGACAACAGGCAAAC
TCATGGCGGTAGCGTTCGGTGACTCAACCGGACTATTTTTCACTGACAGCCACAGATCGCACCGG
ACCGGTACCGGCGCGCGATGGCGGGGGGTATAAGCGAAACCGGTGACAGGTCGGTATGAGGGTCC
AAACCACGTGAGGCTCGCGTCGGTCTTGGTGGGATTGTGAGAAGCTTTGGTGAGGGTGGGATCTA
CGTTGGTGACATGACACAAAGTGGCCGAGGAGAAACCTGGGGTAAAAGGTAGGTCGAGTGGGGAA
ACGAGAAAAATAACACACGGAACTTGAGGAAAACTGGAGCATGTA
Right flanking sequence: Indices 12715 -- 13214
TGAGTGGAGCTCTTCTAGAACCTCCCAAGATCTCAGGGGGTTTCGTGTGAGAAATGTTTACAGTT
TCGGTAGGTTCTTTAATAGATTTCTGTACCAACTGAAGATGACTATAATAGACGACGAGACTACA
CAGAGACCAAATAAGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGGGTAGGTACAG
CTAGTGGTTCCGGGTGTATTTTATCCATGACTATACTATTAATTCCCATTTCACGCCTTATAGCG
CCCAGCCTACTCGTCATCAAAGAAGAAGTGGGCAACCACGATCCAAGCTACTCCGCTGGCGACGA
GGCCACTGGACAAGACAAAAATGGTGATAGCGGCACTGGGGATGCAATACTTGATTACTTGGATC
ATTAGTGGTGGTGGTGGTTTGTAGTTGGTATTTAGATCTAGTGTATGCAACACAACGTTTTGAAA
GAAGTGACGACTGGTAGAAAGTTCTCGTAATTAACTAGAGCAACA
Found at i:13407 original size:8 final size:9
Alignment explanation
Indices: 13393--13469 Score: 73
Period size: 8 Copynumber: 9.6 Consensus size: 9
13383 AAGCCTCTTG
13393 AACCTGGCC
1 AACCTGGCC
13402 -ACCTGGCC
1 AACCTGGCC
* *
13410 -ATCTAGCC
1 AACCTGGCC
13418 AACC-GGCC
1 AACCTGGCC
13426 AACC-GGCC
1 AACCTGGCC
13434 AACCTGG-C
1 AACCTGGCC
13442 AACC-GGCC
1 AACCTGGCC
13450 AACCTGG-C
1 AACCTGGCC
13458 AACC--GCC
1 AACCTGGCC
13465 AACCT
1 AACCT
13470 CAATGCCACT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
6 1 0.02
7 7 0.12
8 44 0.76
9 6 0.10
ACGTcount: A:0.25, C:0.45, G:0.21, T:0.09
Consensus pattern (9 bp):
AACCTGGCC
Left flanking sequence: Indices 12893 -- 13392
CCCCAGGGTAGGTACAGCTAGTGGTTCCGGGTGTATTTTATCCATGACTATACTATTAATTCCCA
TTTCACGCCTTATAGCGCCCAGCCTACTCGTCATCAAAGAAGAAGTGGGCAACCACGATCCAAGC
TACTCCGCTGGCGACGAGGCCACTGGACAAGACAAAAATGGTGATAGCGGCACTGGGGATGCAAT
ACTTGATTACTTGGATCATTAGTGGTGGTGGTGGTTTGTAGTTGGTATTTAGATCTAGTGTATGC
AACACAACGTTTTGAAAGAAGTGACGACTGGTAGAAAGTTCTCGTAATTAACTAGAGCAACAGCT
CGTCACCCAGACTCCCAAACCATATCTAGCTGTACACCGTGTGGACCACTAACCCACACAAATAT
CAAACACCCTATTTTATACCCGTGCCTAGAACCATTGAACCAGCTAACCAACTGAACCACGAACC
TAAAAGAACCATCAAAACCCGCAAGCCCACACTGTAAGCCTCTTG
Right flanking sequence: Indices 13470 -- 13969
CAATGCCACTACCGCCCTCAACTACTTTCGTACATTCATACACAGCCACCGGGGCTACTCCATCG
CCTTCTCGATCCACTTTTTCGCCTCCTCCACGCTCTTCTCGGGCGAGATCGTCACGCGTTTGTCG
GCCAACTTCCCGTCAGCAAACACCCAGTGCGATCGCTTGACCCCCTTCTGGGGGGTCTTTTTCGC
GCCCAATACGCCTACCAACACCCGCTTCGGGTCCAGCAACAACGGGTACGGCAAGTCGTACTTGG
AAATGAACGACGTCTGCGACTTGGGCAGGTCAGCAGACAACCCGTACACTTTGACCCCGTGCTCC
TTGTAGAAGTCGTAGTCGTCGCGGAACCCCTTGGCCTGGCGGGTGCACCCGGGGGTGTTGGCCTT
GGGGTAGGCAAAGATCACCACGTACTTGGTGGAGTTGACCACTTTCTGGAGGTCTACGTCGTTGT
CGTTCTCGTCCTTGACGGTGATGGCGGGCATGGCGTCGCCCACCT
Found at i:13425 original size:24 final size:25
Alignment explanation
Indices: 13393--13468 Score: 81
Period size: 24 Copynumber: 3.2 Consensus size: 25
13383 AAGCCTCTTG
*
13393 AACCTGGCC-ACCTGGCC-ATCTAGCC
1 AACC-GGCCAACCTGGCCAACCT-GCC
*
13418 AACCGGCCAACC-GGCCAACCTGGC
1 AACCGGCCAACCTGGCCAACCTGCC
13442 AACCGGCCAACCTGG-CAACC-GCC
1 AACCGGCCAACCTGGCCAACCTGCC
13465 AACC
1 AACC
13469 TCAATGCCAC
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
23 6 0.13
24 27 0.60
25 12 0.27
ACGTcount: A:0.25, C:0.46, G:0.21, T:0.08
Consensus pattern (25 bp):
AACCGGCCAACCTGGCCAACCTGCC
Left flanking sequence: Indices 12893 -- 13392
CCCCAGGGTAGGTACAGCTAGTGGTTCCGGGTGTATTTTATCCATGACTATACTATTAATTCCCA
TTTCACGCCTTATAGCGCCCAGCCTACTCGTCATCAAAGAAGAAGTGGGCAACCACGATCCAAGC
TACTCCGCTGGCGACGAGGCCACTGGACAAGACAAAAATGGTGATAGCGGCACTGGGGATGCAAT
ACTTGATTACTTGGATCATTAGTGGTGGTGGTGGTTTGTAGTTGGTATTTAGATCTAGTGTATGC
AACACAACGTTTTGAAAGAAGTGACGACTGGTAGAAAGTTCTCGTAATTAACTAGAGCAACAGCT
CGTCACCCAGACTCCCAAACCATATCTAGCTGTACACCGTGTGGACCACTAACCCACACAAATAT
CAAACACCCTATTTTATACCCGTGCCTAGAACCATTGAACCAGCTAACCAACTGAACCACGAACC
TAAAAGAACCATCAAAACCCGCAAGCCCACACTGTAAGCCTCTTG
Right flanking sequence: Indices 13469 -- 13968
TCAATGCCACTACCGCCCTCAACTACTTTCGTACATTCATACACAGCCACCGGGGCTACTCCATC
GCCTTCTCGATCCACTTTTTCGCCTCCTCCACGCTCTTCTCGGGCGAGATCGTCACGCGTTTGTC
GGCCAACTTCCCGTCAGCAAACACCCAGTGCGATCGCTTGACCCCCTTCTGGGGGGTCTTTTTCG
CGCCCAATACGCCTACCAACACCCGCTTCGGGTCCAGCAACAACGGGTACGGCAAGTCGTACTTG
GAAATGAACGACGTCTGCGACTTGGGCAGGTCAGCAGACAACCCGTACACTTTGACCCCGTGCTC
CTTGTAGAAGTCGTAGTCGTCGCGGAACCCCTTGGCCTGGCGGGTGCACCCGGGGGTGTTGGCCT
TGGGGTAGGCAAAGATCACCACGTACTTGGTGGAGTTGACCACTTTCTGGAGGTCTACGTCGTTG
TCGTTCTCGTCCTTGACGGTGATGGCGGGCATGGCGTCGCCCACC
Found at i:13434 original size:16 final size:16
Alignment explanation
Indices: 13415--13469 Score: 87
Period size: 16 Copynumber: 3.5 Consensus size: 16
13405 TGGCCATCTA
13415 GCCAACC-GGCCAACCG
1 GCCAACCTGG-CAACCG
13431 GCCAACCTGGCAACCG
1 GCCAACCTGGCAACCG
13447 GCCAACCTGGCAACC-
1 GCCAACCTGGCAACCG
13462 GCCAACCT
1 GCCAACCT
13470 CAATGCCACT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.21
16 28 0.74
17 2 0.05
ACGTcount: A:0.25, C:0.47, G:0.22, T:0.05
Consensus pattern (16 bp):
GCCAACCTGGCAACCG
Left flanking sequence: Indices 12915 -- 13414
GGTTCCGGGTGTATTTTATCCATGACTATACTATTAATTCCCATTTCACGCCTTATAGCGCCCAG
CCTACTCGTCATCAAAGAAGAAGTGGGCAACCACGATCCAAGCTACTCCGCTGGCGACGAGGCCA
CTGGACAAGACAAAAATGGTGATAGCGGCACTGGGGATGCAATACTTGATTACTTGGATCATTAG
TGGTGGTGGTGGTTTGTAGTTGGTATTTAGATCTAGTGTATGCAACACAACGTTTTGAAAGAAGT
GACGACTGGTAGAAAGTTCTCGTAATTAACTAGAGCAACAGCTCGTCACCCAGACTCCCAAACCA
TATCTAGCTGTACACCGTGTGGACCACTAACCCACACAAATATCAAACACCCTATTTTATACCCG
TGCCTAGAACCATTGAACCAGCTAACCAACTGAACCACGAACCTAAAAGAACCATCAAAACCCGC
AAGCCCACACTGTAAGCCTCTTGAACCTGGCCACCTGGCCATCTA
Right flanking sequence: Indices 13470 -- 13969
CAATGCCACTACCGCCCTCAACTACTTTCGTACATTCATACACAGCCACCGGGGCTACTCCATCG
CCTTCTCGATCCACTTTTTCGCCTCCTCCACGCTCTTCTCGGGCGAGATCGTCACGCGTTTGTCG
GCCAACTTCCCGTCAGCAAACACCCAGTGCGATCGCTTGACCCCCTTCTGGGGGGTCTTTTTCGC
GCCCAATACGCCTACCAACACCCGCTTCGGGTCCAGCAACAACGGGTACGGCAAGTCGTACTTGG
AAATGAACGACGTCTGCGACTTGGGCAGGTCAGCAGACAACCCGTACACTTTGACCCCGTGCTCC
TTGTAGAAGTCGTAGTCGTCGCGGAACCCCTTGGCCTGGCGGGTGCACCCGGGGGTGTTGGCCTT
GGGGTAGGCAAAGATCACCACGTACTTGGTGGAGTTGACCACTTTCTGGAGGTCTACGTCGTTGT
CGTTCTCGTCCTTGACGGTGATGGCGGGCATGGCGTCGCCCACCT
Found at i:17539 original size:12 final size:13
Alignment explanation
Indices: 17522--17554 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
17512 CGAGTGCACA
17522 TCTTTTGCAA-GG
1 TCTTTTGCAAGGG
17534 TCTTTTGCAAGGG
1 TCTTTTGCAAGGG
17547 TCTTTTGC
1 TCTTTTGC
17555 GAGGAATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.12, C:0.18, G:0.24, T:0.45
Consensus pattern (13 bp):
TCTTTTGCAAGGG
Left flanking sequence: Indices 17022 -- 17521
AAGAGACCTCCAAGAAACCACTCGGAATTTGGACCTCGAAACGGTAATGATACGAGCTTAAGACG
CAAGGGTAAGCATCGTGCCTGACACCAAATTTCTGGTGACTAGACGAAAGGTGGATATATGAGGC
TGCAGGAGGGAGGCATGTGGTCTCACACTACCCCCCAGTGTCTCTCAATACTCTGTTCCTTACAT
TTACCAATTTGCGGATCAAACCCACGAACGCGTTTGAGTTCAGCATCGTCATCGCACGTAATAAA
CGAGTGCAATGATTCGCGACCCAAGGGGGGTGACACAAAGAACGGGCTGTTTCTCTAAGGGTTTG
ACACGGTTTCAGGGTTCAATGTGGTCTGGAACGAGCGAGCACAGGCTAAACTGTCCCAAGTTGCA
TTCCGGATGCAGCGACGATATGGGATCATACCGACCGTGTACCAAACGTGTATCAAGCCACACAT
GTTTTCAGATCTCTACCTGGGGTGTATTTAGGTATCGAGTGCACA
Right flanking sequence: Indices 17555 -- 18054
GAGGAATACTGTACCCTTCACCATATCGCTGAAGACGAAGGCAGAGCAAATCGGGGCAGCATCAG
CTTAATGTAGCACTCAATTGCATACTAATGCTTAAAAACAGACAAAGACTCGGTTTTTTGTCTCC
ACTAGCACACCATCCCACTCACCATCACTCCGGTTAATCTACACCACGTCAACACCACGTCTAAA
CCACCCACACCAATTGCAAACACAACACCCAGAACCTAAAGCACATATACAACGAATCACGCCAT
TCACCACCCTACCTCTATTTCCACCTTCCCTCTCGTTGCCTATCCTACGTTTTCACGCGATCTCT
CCCATACTTACATAGACCGACCGCTCCTCCACGCCACACGCCACACCAACAACCCACCCACTACA
CCCACCTGTTAAAACCACCCAACACACCACCAACCACACCACCACCACACCATCCAGTACACCTC
CCAGCACACCTCCCAGCACACCACCCACCATTTAACCCACCACAT
Found at i:17975 original size:12 final size:12
Alignment explanation
Indices: 17958--18036 Score: 79
Period size: 12 Copynumber: 6.7 Consensus size: 12
17948 ACCTGTTAAA
*
17958 ACCACCCAACAC
1 ACCACCCAGCAC
* *
17970 ACCACCAACCAC
1 ACCACCCAGCAC
*
17982 ACCA-CCACCAC
1 ACCACCCAGCAC
* *
17993 ACCATCCAGTAC
1 ACCACCCAGCAC
*
18005 ACCTCCCAGCAC
1 ACCACCCAGCAC
*
18017 ACCTCCCAGCAC
1 ACCACCCAGCAC
18029 ACCACCCA
1 ACCACCCA
18037 CCATTTAACC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
11 10 0.18
12 47 0.82
ACGTcount: A:0.34, C:0.57, G:0.04, T:0.05
Consensus pattern (12 bp):
ACCACCCAGCAC
Left flanking sequence: Indices 17458 -- 17957
CGTGTATCAAGCCACACATGTTTTCAGATCTCTACCTGGGGTGTATTTAGGTATCGAGTGCACAT
CTTTTGCAAGGTCTTTTGCAAGGGTCTTTTGCGAGGAATACTGTACCCTTCACCATATCGCTGAA
GACGAAGGCAGAGCAAATCGGGGCAGCATCAGCTTAATGTAGCACTCAATTGCATACTAATGCTT
AAAAACAGACAAAGACTCGGTTTTTTGTCTCCACTAGCACACCATCCCACTCACCATCACTCCGG
TTAATCTACACCACGTCAACACCACGTCTAAACCACCCACACCAATTGCAAACACAACACCCAGA
ACCTAAAGCACATATACAACGAATCACGCCATTCACCACCCTACCTCTATTTCCACCTTCCCTCT
CGTTGCCTATCCTACGTTTTCACGCGATCTCTCCCATACTTACATAGACCGACCGCTCCTCCACG
CCACACGCCACACCAACAACCCACCCACTACACCCACCTGTTAAA
Right flanking sequence: Indices 18037 -- 18536
CCATTTAACCCACCACATCATCCTTCCGCGATCGTCCTCATCATTTTTCAAGCCGCACCAAACAC
CACCATGTCCCAGCAACCGGCCGCCCCGCAGGCACCCAGGCCCGGCACCGAGTGGCAGGAGATTC
CACTCGAGTGCTGCTCGGCCCAGGAGCTCGCCGACACCAACTGCCACATCATGAAGTTCCAGAAC
AACAAGCCCGTGGACATCGTCAAGGACTTCCTGAAGCCCGTCCGGCTCCACCGCAAGGACCCCCG
CAATATCCAGTTCCAGTTGAGTCGCAAGGAGATCGACGAGCGCAAACGGGAAAACCCCGACGCCA
AAATCTTGGAAAACAACCCCGACGAGATGGACGAGTCCCAGGTGGCCCCCGACGGCGGGGGAAGA
CGCAAGCAGCGCAACTTCTTCAAGCGCAAGACCCGCCAGGTGCAGGTGATGGACGAGGAGAAGCG
GAAATTGCGGTACGAGGAGTTCTACCCGTGGGTGATCGAGGACTA
Found at i:24055 original size:12 final size:12
Alignment explanation
Indices: 24038--24076 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
24028 ATCTAGTCCT
24038 CTCCTCCTCTTC
1 CTCCTCCTCTTC
24050 CTCCTCCTCTTC
1 CTCCTCCTCTTC
*
24062 CTCCTCCTCTAC
1 CTCCTCCTCTTC
24074 CTC
1 CTC
24077 TCTTCTCCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.03, C:0.59, G:0.00, T:0.38
Consensus pattern (12 bp):
CTCCTCCTCTTC
Left flanking sequence: Indices 23538 -- 24037
GGGGGGAGAAGAACAGGTGGGTTAGTGGGTTACAGGTGGTTCTCACACAGGTTGTGATGTGTTGT
TTTAGCGTTTTGGGTCTAGTAGTCGGGTGGTTATGTTGGTGCTGAGTAATGGCTGCGAAAAATCG
CTATCTCAGTGGTGGAAAAAGCGGACGTAATGTGAAGTTATTCGATGGAAGGGCGCTTCAGGTTT
TGAAGAGAGGTGGCGTTTATAGCCATATCTTAAGAATTGGGTGGTCTACCAGATGGTCTTAACTC
CGAGTAGAACCCAATTTGCCACCGAAATAGGTGGAATCCAGCGGGGTTTTGGGAGATGAAAGTAA
TTATAGGCCGTGGGTGTTGCTGATACGCTCGGTTTTCACACTGACACCGAGGATACCGACTCCAC
TGAACTACTACCATTTCCACTTCAGTGCCTCGATCCGTGATTTGAACCACTAGACACCATCATAT
CCTCTTCCCTGCACACACTACGCCGGTTCCGGCTCATCTAGTCCT
Right flanking sequence: Indices 24077 -- 24576
TCTTCTCCTCTATCATACATTCATTACTTACATCTTGCAACCACCCTTGGCAAAGGTGTCGAACC
AGCACAACTGGTCGCCAAGGGTCTTCTCAGCAGCATACTTCACCGCAGGGTCCTTGATGTCACCA
CGCACAGCGTACCCGTGGGTGGTGCCCGAGAACAAGTCAAACTGGTAGCGCACACCCTTCTTGGC
CGCCAACGCCTTAGTGGCCTCGAACCGGGACTCGGGGGTGAAAATGGGGTCTTCCTCAGCACACG
AGAAGAGCACAGGCTTCTCCACCGCCTTGATTTCGTCCATGGTCACGAACGAGGGGTGGGCAGCA
CACCCAGCGTCAAAGAGGCCCTGGGAGCCAAGGTTGTTGACAACGTACTTGGCACCAAAGCAGTA
GCCGACACCGCCAACAAACAGCGGCTTCAATTCCAGGCGCACCTTCTTGAGGAATCCGTCGACAA
TGGGCTGGGTCACCTCTTGGGTGTGCTTCTCGAGCCAGGGGCCCA
Found at i:25513 original size:14 final size:14
Alignment explanation
Indices: 25494--25527 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
25484 CAAGTGACAC
25494 AAGCCGTATCCACA
1 AAGCCGTATCCACA
25508 AAGCCGTATCCACA
1 AAGCCGTATCCACA
25522 AAGCCG
1 AAGCCG
25528 GGTTCAGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.35, C:0.35, G:0.18, T:0.12
Consensus pattern (14 bp):
AAGCCGTATCCACA
Left flanking sequence: Indices 24994 -- 25493
GGAAAGTGTGGGGAACCCGGGACGGGGACGGGCCGTGGGCGGAGGGTGTGGCTCAGCTGTTTCAC
TGGGGGTTCCACCCGTTCCGTGTCGAGCTTCTGTCCCCGGCCGATCTCTCTCCGAGAACATCACG
TGAGCTCGGCCAAACAAGCCGACCAGCCTGTGCTAAATGCCGGTATGCGAGGGGTAGGCCCACGG
TGGAACACAATGGAAGCACGTGAGGCAGATCAATGCGGGGGACAGGGCGGACAGTGTCGAAGGAG
AGGCGGAAACTGTGGCTGATAGCCGTCGTAGTTCAATTGTAGTATCAGGTCGTTTTCAGTACCAT
TGAGGTAGCCCCTATCGGAACCCCTATTTGGACGTTTTGGGTGGTGCAATTCCACCAGTTTCATG
TGACTGTTGGACGGGCCACGAAACGCCTAATGAGTAAGTTGACAGGTGATGCAATGTCACAGATC
TCGCAAACTCCCGATATACGCTCGTGGACCGTGAGCAAGTGACAC
Right flanking sequence: Indices 25528 -- 26027
GGTTCAGATCACGGAGGCGTCGGGTTGTAGGCAAGATTGTGACCCAAAGCCCCACCAGTCCACTC
GCCTAATTTTTAGCCCAAGGAGTCTAATGCCGTATTCTTCTATGCATAGACGAGGCCAATCCTCT
GCATACGAAACGAGCCCTACCCGTCAACTACCAATTGAAAGAACGTCTGTCCAATAATTATATAA
GTTAAACACCCCTGTCCACTATACAATCCTTAGATCAACGCGCCGACGACACCAGCGCCGACGAG
CAACGAGCCAACCTTCAACAAGCCGGCACCACCGGTGGCAACCAGGGGAGCCGCGTTCTCGGACT
TGTGGTCGTCGTGGTCGTGGTCGTGGTCGTGGGTGTGGCTGCCAGAAGCGTCGGCGTGCTCGTCC
TCGTGCTTGTGGTCGTGGTCGTGGTCACCGGTGACCTGGGCCTCCTCCGAGGAGTGCTTGTGGTC
CTCCTCGTGGTCGTGCTCGTGGTCGTGAGCCTCGCCGGAAGCCTC
Found at i:25871 original size:6 final size:6
Alignment explanation
Indices: 25860--25884 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25850 ACTTGTGGTC
25860 GTCGTG GTCGTG GTCGTG GTCGTG G
1 GTCGTG GTCGTG GTCGTG GTCGTG G
25885 GTGTGGCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.52, T:0.32
Consensus pattern (6 bp):
GTCGTG
Left flanking sequence: Indices 25360 -- 25859
TGGTGCAATTCCACCAGTTTCATGTGACTGTTGGACGGGCCACGAAACGCCTAATGAGTAAGTTG
ACAGGTGATGCAATGTCACAGATCTCGCAAACTCCCGATATACGCTCGTGGACCGTGAGCAAGTG
ACACAAGCCGTATCCACAAAGCCGTATCCACAAAGCCGGGTTCAGATCACGGAGGCGTCGGGTTG
TAGGCAAGATTGTGACCCAAAGCCCCACCAGTCCACTCGCCTAATTTTTAGCCCAAGGAGTCTAA
TGCCGTATTCTTCTATGCATAGACGAGGCCAATCCTCTGCATACGAAACGAGCCCTACCCGTCAA
CTACCAATTGAAAGAACGTCTGTCCAATAATTATATAAGTTAAACACCCCTGTCCACTATACAAT
CCTTAGATCAACGCGCCGACGACACCAGCGCCGACGAGCAACGAGCCAACCTTCAACAAGCCGGC
ACCACCGGTGGCAACCAGGGGAGCCGCGTTCTCGGACTTGTGGTC
Right flanking sequence: Indices 25885 -- 26384
GTGTGGCTGCCAGAAGCGTCGGCGTGCTCGTCCTCGTGCTTGTGGTCGTGGTCGTGGTCACCGGT
GACCTGGGCCTCCTCCGAGGAGTGCTTGTGGTCCTCCTCGTGGTCGTGCTCGTGGTCGTGAGCCT
CGCCGGAAGCCTCAGCCTCGTGAGCGTGGTCGTGGGCGCCAGTCTCGTGGGCGTGGTCGTGGTCG
TGCTCGCCGGAGACCGAGTGGTCGTGGTCGTGGTCGTGGTCGTCAGCAGCGGCGACGACAGCCAA
AAGAACACCGAGAGGAAGAAGAAATTGCATTGTGATAGTAGAGAATTACTTGGCAGACCCCCCGT
ATTTATAGTGTTTGTCCCCGTCCCCAGTTTATCGAGCTGCCCATTTTGTGTCGTCAATGGCAGGG
CTGAATGGCACCATGCATGTTGCAACCAATGCCACAGATCTGGCTGCAAAAAGCCCAGACCGCCC
CAAAAAAAGAACCGAGACTACACAAACCGCCACCTGGGGTGCCCC
Found at i:26007 original size:12 final size:12
Alignment explanation
Indices: 25971--26009 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
25961 CCTCCGAGGA
*
25971 GTGCTTGTGGTC
1 GTGCTCGTGGTC
* *
25983 CTCCTCGTGGTC
1 GTGCTCGTGGTC
25995 GTGCTCGTGGTC
1 GTGCTCGTGGTC
26007 GTG
1 GTG
26010 AGCCTCGCCG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.26, G:0.38, T:0.36
Consensus pattern (12 bp):
GTGCTCGTGGTC
Left flanking sequence: Indices 25471 -- 25970
CGTGGACCGTGAGCAAGTGACACAAGCCGTATCCACAAAGCCGTATCCACAAAGCCGGGTTCAGA
TCACGGAGGCGTCGGGTTGTAGGCAAGATTGTGACCCAAAGCCCCACCAGTCCACTCGCCTAATT
TTTAGCCCAAGGAGTCTAATGCCGTATTCTTCTATGCATAGACGAGGCCAATCCTCTGCATACGA
AACGAGCCCTACCCGTCAACTACCAATTGAAAGAACGTCTGTCCAATAATTATATAAGTTAAACA
CCCCTGTCCACTATACAATCCTTAGATCAACGCGCCGACGACACCAGCGCCGACGAGCAACGAGC
CAACCTTCAACAAGCCGGCACCACCGGTGGCAACCAGGGGAGCCGCGTTCTCGGACTTGTGGTCG
TCGTGGTCGTGGTCGTGGTCGTGGGTGTGGCTGCCAGAAGCGTCGGCGTGCTCGTCCTCGTGCTT
GTGGTCGTGGTCGTGGTCACCGGTGACCTGGGCCTCCTCCGAGGA
Right flanking sequence: Indices 26010 -- 26509
AGCCTCGCCGGAAGCCTCAGCCTCGTGAGCGTGGTCGTGGGCGCCAGTCTCGTGGGCGTGGTCGT
GGTCGTGCTCGCCGGAGACCGAGTGGTCGTGGTCGTGGTCGTGGTCGTCAGCAGCGGCGACGACA
GCCAAAAGAACACCGAGAGGAAGAAGAAATTGCATTGTGATAGTAGAGAATTACTTGGCAGACCC
CCCGTATTTATAGTGTTTGTCCCCGTCCCCAGTTTATCGAGCTGCCCATTTTGTGTCGTCAATGG
CAGGGCTGAATGGCACCATGCATGTTGCAACCAATGCCACAGATCTGGCTGCAAAAAGCCCAGAC
CGCCCCAAAAAAAGAACCGAGACTACACAAACCGCCACCTGGGGTGCCCCACTACCCCTATCGTC
ACACGGTGTCGCAATGGCCCGCTACTCCCGTCTATTCTCTATTTCTACGCGGCTGGTCTGCAACA
ACCGTAACGGTTGCCGCGATTTTTCTTGGCTGGCCAAGAAATATA
Found at i:26108 original size:6 final size:6
Alignment explanation
Indices: 26097--26122 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26087 CGGAGACCGA
26097 GTGGTC GTGGTC GTGGTC GTGGTC GT
1 GTGGTC GTGGTC GTGGTC GTGGTC GT
26123 CAGCAGCGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.50, T:0.35
Consensus pattern (6 bp):
GTGGTC
Left flanking sequence: Indices 25597 -- 26096
AATTTTTAGCCCAAGGAGTCTAATGCCGTATTCTTCTATGCATAGACGAGGCCAATCCTCTGCAT
ACGAAACGAGCCCTACCCGTCAACTACCAATTGAAAGAACGTCTGTCCAATAATTATATAAGTTA
AACACCCCTGTCCACTATACAATCCTTAGATCAACGCGCCGACGACACCAGCGCCGACGAGCAAC
GAGCCAACCTTCAACAAGCCGGCACCACCGGTGGCAACCAGGGGAGCCGCGTTCTCGGACTTGTG
GTCGTCGTGGTCGTGGTCGTGGTCGTGGGTGTGGCTGCCAGAAGCGTCGGCGTGCTCGTCCTCGT
GCTTGTGGTCGTGGTCGTGGTCACCGGTGACCTGGGCCTCCTCCGAGGAGTGCTTGTGGTCCTCC
TCGTGGTCGTGCTCGTGGTCGTGAGCCTCGCCGGAAGCCTCAGCCTCGTGAGCGTGGTCGTGGGC
GCCAGTCTCGTGGGCGTGGTCGTGGTCGTGCTCGCCGGAGACCGA
Right flanking sequence: Indices 26123 -- 26622
CAGCAGCGGCGACGACAGCCAAAAGAACACCGAGAGGAAGAAGAAATTGCATTGTGATAGTAGAG
AATTACTTGGCAGACCCCCCGTATTTATAGTGTTTGTCCCCGTCCCCAGTTTATCGAGCTGCCCA
TTTTGTGTCGTCAATGGCAGGGCTGAATGGCACCATGCATGTTGCAACCAATGCCACAGATCTGG
CTGCAAAAAGCCCAGACCGCCCCAAAAAAAGAACCGAGACTACACAAACCGCCACCTGGGGTGCC
CCACTACCCCTATCGTCACACGGTGTCGCAATGGCCCGCTACTCCCGTCTATTCTCTATTTCTAC
GCGGCTGGTCTGCAACAACCGTAACGGTTGCCGCGATTTTTCTTGGCTGGCCAAGAAATATAACC
ACTATATCTATGCAAATTGGTAAGCACCGGGATCTTCCACTACGAGCCCCGCAGCCTCCTCCTCA
AGATGCAACCACGACACGGAGCCCAACCGGCTGTCGCTAGCCGAG
Found at i:31707 original size:6 final size:6
Alignment explanation
Indices: 31696--31821 Score: 90
Period size: 6 Copynumber: 19.0 Consensus size: 6
31686 TCTTATTGGT
* *
31696 GTGTTG GTGTTGG AGTGTTG GTGTTG GTGTGTT GTTTTCGG TGTGTTG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGT-TG GTGTT--G -GTGTTG
31744 GTGTTGG TGTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTGG TGTGTTG
1 GTGTT-G -GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTT-G -GTGTTG
* * * *
31792 GTTTTG GTGTTG TTGTTG TTGTTG TTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG
31822 CTGGTCGTTG
Statistics
Matches: 101, Mismatches: 7, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
6 64 0.63
7 13 0.13
8 20 0.20
9 4 0.04
ACGTcount: A:0.01, C:0.01, G:0.45, T:0.53
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 31196 -- 31695
GCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAGAAAATCA
AAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGGAGTCTCCCGGCTGGGTCATTATCC
GTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGCTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGG
GAGACGAGATCAGAAGTACTAGCAGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 31822 -- 32321
CTGGTCGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATATATACAGGTT
CCCTATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGATCAGTATCACATGTATTTT
TTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTA
CCACAATTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTAT
TCCCTAACATAACCTATTATGTAATAAAAATATAATATGTTTGAA
Found at i:31713 original size:14 final size:14
Alignment explanation
Indices: 31691--31818 Score: 131
Period size: 14 Copynumber: 9.2 Consensus size: 14
31681 CCCCCTCTTA
31691 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
31705 TTGGAGTGTTGGTG
1 TTGGTGTGTTGGTG
*
31719 TTGGTGTGTT-GTT
1 TTGGTGTGTTGGTG
31732 TTCGGTGTGTTGGTG
1 TT-GGTGTGTTGGTG
31747 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
31761 TTGGTGT-TGGTGTG
1 TTGGTGTGTTG-GTG
*
31775 TTGGTGT-TGGTGTG
1 TTGGTGTGTTG-GTG
31789 TTGGT-T-TTGGTG
1 TTGGTGTGTTGGTG
* *
31801 TTGTTGTTGTTGTTG
1 TTGGTG-TGTTGGTG
31816 TTG
1 TTG
31819 TTGCTGGTCG
Statistics
Matches: 100, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
12 7 0.07
13 9 0.09
14 72 0.72
15 12 0.12
ACGTcount: A:0.01, C:0.01, G:0.45, T:0.53
Consensus pattern (14 bp):
TTGGTGTGTTGGTG
Left flanking sequence: Indices 31191 -- 31690
CGCTTGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAGAA
AATCAAAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGG
TGATACTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGGAGTCTCCCGGCTGGGTCAT
TATCCGTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGCTTGTT
ACTGGTGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGC
TTCTACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATC
GCCACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCA
TATGGGAGACGAGATCAGAAGTACTAGCAGTACCACCCCCTCTTA
Right flanking sequence: Indices 31819 -- 32318
TTGCTGGTCGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATG
GTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGTGGTGCC
ATTGGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCC
TGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATATATACAG
GTTCCCTATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGATCAGTATCACATGTAT
TTTTTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTT
CTACCACAATTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTC
TATTCCCTAACATAACCTATTATGTAATAAAAATATAATATGTTT
Found at i:31721 original size:20 final size:20
Alignment explanation
Indices: 31696--31821 Score: 127
Period size: 20 Copynumber: 6.3 Consensus size: 20
31686 TCTTATTGGT
*
31696 GTGTTGGTGTTGGAGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
* *
31716 GTGTTGGTG-TGTTGTTTTCGG
1 GTGTTGGTGTTGGTGTGTT--G
31737 TGTGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTGGTGTGTTG
31758 GTGTTGGTGTTGGTGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
31778 GTGTTGGTGTGTTGGT-T-TTG
1 GTGTT-G-GTGTTGGTGTGTTG
*
31798 GTGTTGTTGTT-GT-TGTTG
1 GTGTTGGTGTTGGTGTGTTG
*
31816 TTGTTG
1 GTGTTG
31822 CTGGTCGTTG
Statistics
Matches: 92, Mismatches: 7, Indels: 16
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.03
18 12 0.13
19 7 0.08
20 42 0.46
21 4 0.04
22 17 0.18
23 7 0.08
ACGTcount: A:0.01, C:0.01, G:0.45, T:0.53
Consensus pattern (20 bp):
GTGTTGGTGTTGGTGTGTTG
Left flanking sequence: Indices 31196 -- 31695
GCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAGAAAATCA
AAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGGAGTCTCCCGGCTGGGTCATTATCC
GTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGCTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGG
GAGACGAGATCAGAAGTACTAGCAGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 31822 -- 32321
CTGGTCGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCGCCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATATATACAGGTT
CCCTATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGATCAGTATCACATGTATTTT
TTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTA
CCACAATTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTAT
TCCCTAACATAACCTATTATGTAATAAAAATATAATATGTTTGAA
Found at i:45941 original size:14 final size:14
Alignment explanation
Indices: 45922--45956 Score: 56
Period size: 12 Copynumber: 2.6 Consensus size: 14
45912 TATCTTCTTA
45922 CCTGATATATTTTC
1 CCTGATATATTTTC
45936 CCTG--ATATTTTC
1 CCTGATATATTTTC
45948 CCTGATATA
1 CCTGATATA
45957 GTATCTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 12 0.63
14 7 0.37
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (14 bp):
CCTGATATATTTTC
Left flanking sequence: Indices 45422 -- 45921
ATCATCCTCCGGAACATGGGCAAGGCCATTGTCACGGGCCCACGGCGCAAGGTGTTGTTGTTGAA
CGGGAGCACCGACCGTGAAACCGCCGACATGACGGGCGAGGACTTTGTGCGGGTGATTGTCGAGG
CTGCCCGCTATCTGTTGGAGAAAACCAACAACCTGGTGGCGCTAACGGGCACCTGGGACCAGTTT
GTGACGGATGTGGTGTACTTGAGCCACGGGATCCCGGTGAATGCGGCCTACTTGGAGAAAATGGG
GGTGCGGAGCCATTGTATCGAGGGAACCGACCGGTATAACGCGGAGGTGTTGACCAAGGTGCTCG
CTGAGTTGTGTCAAGAGACAGAGGAGAAACATGGTGGCTTATAGTGGGTGTATTCCTGGCTGTGA
GATGGAAAATCCTGCCTGGTTACACCCAACTTTAATTAAATAATTCACATTGCATCAAGAGAAGC
CCGAGCGAGCAATAAGTAGCAAGAGCAGCTTCAATTATCTTCTTA
Right flanking sequence: Indices 45957 -- 46456
GTATCTTAACTGTATCACACGCCTAAAAGCACCACCCATCACTATTACCTATGTTTATTAATGCT
CTATACCTCATGTCCTAGTCGTACCACACCTTGATCAACTCCTCCGACACCGCACTGGGCGTCAA
CACCCCCAAGTCCGTCACCAACGCCGTGATGAACTCGTCCGGGGTGTAGTCCGTGGTGTACGACG
TAAGCATGTCCTCACCGTCGGTAGCACCCCCCTGCATCAGCTGCGGCAAGTCGTTGGGGGCGTTG
GGAAACATACGCACGAACTTGTGGGACTCGGCCGCCACGTAGAACGGCTTGTGGTTGATTTTAGC
GAGACACCCCACCTGGTACGAGCCAATGTGGTTGATGATGCCCCCCAGCTCAGCAACGCCCTCAG
CACCAACAAAGATCTTGTCGACGTTGTGGATGACGTAGCCCACAGCAGCGTCGACAATCACCTCC
ACGGGGATCCCCTCCTGCTGCAAGAGCTTCGCCATCTTGTACCCT
Found at i:47067 original size:9 final size:9
Alignment explanation
Indices: 47053--47082 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
47043 TGGCTATGTG
47053 GGATGTGTA
1 GGATGTGTA
47062 GGATGTGTA
1 GGATGTGTA
*
47071 GGGTGTGTA
1 GGATGTGTA
47080 GGA
1 GGA
47083 GGTTTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (9 bp):
GGATGTGTA
Left flanking sequence: Indices 46553 -- 47052
TGGACCAACACAATGTCGTCGTCGTTGATGAATCTAACGCCAAACTGCGCCAACTTGGCCCGCAG
CTCCTTGGCCCGCTGGACAAAGAGGGCCCCGTTCTCGACAAGGTTCAGGCGACACAGGTCCCAGT
CGGAGTACAAGTTGGTGTTACGCAACACGAACCGCATGAACAAGTCACAGCCCGCTCCGAGCGAG
ATCAGGTTCAGAATCAGCAGCTTCAACTGGGCGATATTCAGACGCACCAAGTTGATGAGCTCCAG
CGAGGTTTGTGGCTGTTTGGCCCGCAACATCGTCACCAACAGCTCGATGGCGGCGATGGGCATGG
TCATGTCGGGGTCCTTCTGGAGGAAATCGAGGTAGGTGGCCTTGATATCGAACTCGGTCATGGTG
GGGTGGTGATGTTTTCGCGTGCGGCTTGATGTGGTGGGGAGGAAGGTTGATGGTGATAAGATGTG
ACTAAGAGGTGTGTATGGGGAAGAGAAGAGGGTGGTGGCTATGTG
Right flanking sequence: Indices 47083 -- 47582
GGTTTTGTTTGTTGTGGTTTTGTTTACAGGTTTTGGAATAATTGGTGGGTCCCTTGTTACTTGAT
GCGAATGTCCACATGTAGCAGTGACAAGTGGACATTGTGGGAGAAGACAAAGTACACATTGACGT
AGAAAATCGCTACCGGAACAGCCAAACTACCCCATCCTAACCGCCCATATCTTCAATTACCCCCC
GTTGAACCCCACTACCCATCCCTTCCCTTCCACCCTCTCTCTCCTGTACAGAACGCGATGCACTC
TAGATCATCTACACCACCCTTTAGACCACACCCGTCACCCACCCACCCCACCACATACACCATTG
CATAGCATGCCTGCCGATGGTCTATTTGTCGACGAAGAAGATTACGACTCCGTCCGCGTGAAAGA
AGAAGACGGGGGCATGGCGATGGAGATCGACGTCATCCCCGAGGAGGACGAGGAGAAACCACTGC
TAGCACACGACGACGGCGACGACCCGGTGATAAACACCATCCCCG
Found at i:50758 original size:16 final size:16
Alignment explanation
Indices: 50737--50800 Score: 85
Period size: 16 Copynumber: 4.0 Consensus size: 16
50727 TTGACAGCTT
50737 GATAGGTAGCATTGAC
1 GATAGGTAGCATTGAC
*
50753 GATAGGTAGCATTAAC
1 GATAGGTAGCATTGAC
50769 GATA-GTAAGCATTGAC
1 GATAGGT-AGCATTGAC
* *
50785 AATAGTTAGCATTGAC
1 GATAGGTAGCATTGAC
50801 AACAGTGAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
15 2 0.05
16 39 0.93
17 1 0.02
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (16 bp):
GATAGGTAGCATTGAC
Left flanking sequence: Indices 50237 -- 50736
TTCCTGGGCGACAAGAAGGACGACTGGGACACCCACGCCACCACCTGGCACTTGAACGTCGAGCG
GTGGTTGTTGGAGGACGAGGCCGCCAAGGACCTCGCGGTCAAGGGGTTCACCTCGCACATCCGGG
CGTACGCGACCCACTTGAACACCGAGAAGGAGTTCTTCAACGTTAAGAAGATTCACTTGGGGCAC
TTGGCCAAGTCGTTTGGGCTCCGGGAGACGCCCAAGAAGATTGGTGGCGCCGCCGGGAGCAACCC
CGGGACGAAGAGAGCTGCTCCGAAGGAGGATGCCCGCACGAAGATGTTGCGGATGGCCAAGGCGG
CGGTGCGCGACCAGGCGGGCGAGTTTAACTACTAGGATGTTTATAGAGTAAGTCATGGCATATAA
TTCGGGGCTACTAAGGTGCTGTTTCGAAAGGAACTGGGACCTGGTTGTAAGGTAGAGGAGGGTCA
ATGAGCCAGTCAAGGATTCTGGCCCAAAACACCGCTTGACAGCTT
Right flanking sequence: Indices 50801 -- 51300
AACAGTGAGTGCTCCAGACTCGTTTGAATCGATTCTCTTAGTTTCAACCAATTACTCCATTGCTT
CTTCAAATGAACGTGATAGTCGTAGTTGACTTTCATCATACCTCTACTCCTCTGCCACACTCTTC
AAGTGGGCTTCGCGGTACCCGTCAATCGCCCAGAGCCCGTGGTTCTCCCCCAAAAGATACGTGAG
AGCCTGCGTCTGGTAGTAGTCCGCCTTCACCTCCAAATTGGTGATGATATCGTCAAGCAAGATCG
CCTTGCCCGCGGTGATCCCGTTCCCGAGCCCAGGATGCACCACGTTGACAATGTGGATGTGGAAG
TGGTAGTAAGACGGCTGGTAGTGCACAAACACCCGCACCTTATCGCTTGCCAACCCGTACTTCTC
CTTCACCACCTTGAAAATGGTCTTCCGCATCTGCCTCAACCACGGCAAGTGCTGGCCACCAAGAT
CACGCACACACCCAATGCTCTTGGTGTTGACGATCCCTGTGAGGT
Found at i:51965 original size:14 final size:14
Alignment explanation
Indices: 51946--51983 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
51936 ATTTCACTGG
51946 CAATTTGATGGGGA
1 CAATTTGATGGGGA
*
51960 CAATTTGA-AGGGA
1 CAATTTGATGGGGA
51973 CAATTTGATGG
1 CAATTTGATGG
51984 TAGTATTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (14 bp):
CAATTTGATGGGGA
Left flanking sequence: Indices 51446 -- 51945
CTGCAGTTTGATGTAGGGAACAGCGTACTGCTGGTACATCTCGGGGGTTTCGCGAACCATGTGGT
ACTGCTGGGTGTCGTACTTGCGGATGTGGGTGTCGGTGGCGGGGCAGATCACGTCGAGCTTGGTG
CCGTGCTGCTCGCGGAGCTTTGCACGGGCCCAGTAGTAGATGTCGTTGTGCTGGATGAGCTCGAT
GGAGTCGAGGAATGGCTCCGAGGGGTCGATGTCGACGTGGGAGCGCTCGAGTTTGACAATGGCCT
GGTCAGCGCCAATGGTACCAAGGAGCGCCACCAGCTTGCACTGGGGGTCGCTTGCAAGTTCGCGG
ACGAACTTGAACTGGTGTAAAAGCTCGTCAATTGGGGCCAGAGACATGGTGGTGGGACTGAAAAA
TGCGATAAGACTCAAGAAGTACGGAAGTGGGAGATATTCAGGAGAGGGATTGGAGAACATGTATT
TCAGAGAATAGAAGAAAGAGCGGTAAAGTCAGATTATTTCACTGG
Right flanking sequence: Indices 51984 -- 52483
TAGTATTCCAATGGTATCATCTACTTCTGGTTGATTTGGCTGCGAAAACATCCAGTGAAACGTCC
CCAAAGTGCAAACAAGAACACAGAGTGATCAATTAGGACCACAATAATCCCGACGCTACTTACTC
GGTTCAATTGCGACCTCATCATTCACGGTACCTGTTAACAGACTCGAACATCTACTACAACAACA
TTAAAACCACTATTCACCCAGACTACTCAATCATACAGGTGCATCCAAGCTCCCCACTCTAAGAC
GCCTCCTACCTCCTTTCTCATTAGTCTATTATCATATATCATTATGCATCCTCGTCGTCGCTCTC
GTCGGCCATGTCAAAGCAGAGCCAGCTCGGCCATGCAATCTCCTCGCGGAGCATCAGCCGGAGCC
GCTCAGTGAGGAACCGCTCCACTTTGCCCACGTTCCGGAGCACGTTGTTCTCCACCTCTCCGATC
TCCAGCTCGATCTTGATCTTTTTGATGATGTCAATCCGCTCGCGG
Found at i:54038 original size:17 final size:18
Alignment explanation
Indices: 54016--54051 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
54006 AGAACCAGAA
54016 GGAGTGGAT-GAGTGGAT
1 GGAGTGGATGGAGTGGAT
54033 GGAGTGGATGGAGTGGAT
1 GGAGTGGATGGAGTGGAT
54051 G
1 G
54052 AAGAGAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.22, C:0.00, G:0.56, T:0.22
Consensus pattern (18 bp):
GGAGTGGATGGAGTGGAT
Left flanking sequence: Indices 53516 -- 54015
CTCACCACCTTTTTTCACCCCGTCTACGAATCCACTGCCCCTCTGTCCCGCGTTCGGCCCGTCCC
CCCTATCATCACCGGTTTTTTTCAGTGCGCGGCGTCAGCCAGTAAAAACACCAGAAAATAATCCA
CGACACTTCCACCATGTCTGCCAAGTTTGTCGTTTCCGGTGCCGTTAAGGAGTTGAGATTCCACT
TGTCCCAGTCCGGGGAGGCTTCGCAGCCCCTCAGAAAGTTCTTGACCGCCAACTACGGTGCTCTC
AAGGCCGCCTCCAACAACTCGATCCCCATCTTGGTGAGAGAGGCCTACGGCATCAAGCCCTCGTT
CACCGCGAGACTCGAGAAGGGCAAGGAGGTGAAGAAGCTGTTGGACGGCATGGACGAGTCTGCCA
TCTCCGAGCAGGTGGCCAACTTGATCAAGTAACGGGGTTTCATGACATATAATGCATTAATACAA
ACATTTTTAGTCCAGTGTAGTGAAGTGGTTTGGTTAGAACCAGAA
Right flanking sequence: Indices 54052 -- 54551
AAGAGAATGAAGTGGGTGGAGCAGATGGGACAAACAAGTAAAACGTTTACTTTGTGACATATTTT
TACATCGCTCGTGTGTGCTGAAAAATCCACCACCAGCCTAACCAAAACTCACTCGTTTACTTTGG
TCAAAACTAGTGCGAAGAATTGGCCAAAACACCCCTCCGAAGTTAACAACCCGCGTTTCACGCGA
CTAATCATCCCAACTGGTCAATACCATATGCTAAATTACTATATACCATAGCTTTTATCAACTCT
TCCCCTCTTACTCCTTGTAGTCGTCACCAAACTGGTACACGCCCCACCCCAAACTGAGCAACTCG
TCGTTGTAGAGCTCCTTTGCCTGCTGGTTGCCCTCGCTGGCAATGCCCGCGGCCACCACCATCGG
CATGAAGTGCTCCTGGGTCGGGTGGGCCTGGCGGAGAAGCGTCGCGTTGTCCGCTTTGATACTGA
GCATCCGGTCAATCAACTCCGACCCCAGCAGCCGTGGAGTCTCCA
Found at i:54039 original size:9 final size:9
Alignment explanation
Indices: 54016--54051 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
54006 AGAACCAGAA
54016 GGAGTGGAT
1 GGAGTGGAT
54025 -GAGTGGAT
1 GGAGTGGAT
54033 GGAGTGGAT
1 GGAGTGGAT
54042 GGAGTGGAT
1 GGAGTGGAT
54051 G
1 G
54052 AAGAGAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.22, C:0.00, G:0.56, T:0.22
Consensus pattern (9 bp):
GGAGTGGAT
Left flanking sequence: Indices 53516 -- 54015
CTCACCACCTTTTTTCACCCCGTCTACGAATCCACTGCCCCTCTGTCCCGCGTTCGGCCCGTCCC
CCCTATCATCACCGGTTTTTTTCAGTGCGCGGCGTCAGCCAGTAAAAACACCAGAAAATAATCCA
CGACACTTCCACCATGTCTGCCAAGTTTGTCGTTTCCGGTGCCGTTAAGGAGTTGAGATTCCACT
TGTCCCAGTCCGGGGAGGCTTCGCAGCCCCTCAGAAAGTTCTTGACCGCCAACTACGGTGCTCTC
AAGGCCGCCTCCAACAACTCGATCCCCATCTTGGTGAGAGAGGCCTACGGCATCAAGCCCTCGTT
CACCGCGAGACTCGAGAAGGGCAAGGAGGTGAAGAAGCTGTTGGACGGCATGGACGAGTCTGCCA
TCTCCGAGCAGGTGGCCAACTTGATCAAGTAACGGGGTTTCATGACATATAATGCATTAATACAA
ACATTTTTAGTCCAGTGTAGTGAAGTGGTTTGGTTAGAACCAGAA
Right flanking sequence: Indices 54052 -- 54551
AAGAGAATGAAGTGGGTGGAGCAGATGGGACAAACAAGTAAAACGTTTACTTTGTGACATATTTT
TACATCGCTCGTGTGTGCTGAAAAATCCACCACCAGCCTAACCAAAACTCACTCGTTTACTTTGG
TCAAAACTAGTGCGAAGAATTGGCCAAAACACCCCTCCGAAGTTAACAACCCGCGTTTCACGCGA
CTAATCATCCCAACTGGTCAATACCATATGCTAAATTACTATATACCATAGCTTTTATCAACTCT
TCCCCTCTTACTCCTTGTAGTCGTCACCAAACTGGTACACGCCCCACCCCAAACTGAGCAACTCG
TCGTTGTAGAGCTCCTTTGCCTGCTGGTTGCCCTCGCTGGCAATGCCCGCGGCCACCACCATCGG
CATGAAGTGCTCCTGGGTCGGGTGGGCCTGGCGGAGAAGCGTCGCGTTGTCCGCTTTGATACTGA
GCATCCGGTCAATCAACTCCGACCCCAGCAGCCGTGGAGTCTCCA
Found at i:55635 original size:15 final size:15
Alignment explanation
Indices: 55615--55653 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
55605 CGGGGGGAAG
*
55615 GTCAGTGGGAAGTTC
1 GTCAGTGGGAAGCTC
*
55630 GTCAGTAGGAAGCTC
1 GTCAGTGGGAAGCTC
55645 GTCAGTGGG
1 GTCAGTGGG
55654 GAGGGGAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.21, C:0.15, G:0.41, T:0.23
Consensus pattern (15 bp):
GTCAGTGGGAAGCTC
Left flanking sequence: Indices 55115 -- 55614
ACCACGATGATGTAGTCGGGCTGCCACTTCTTGATGGTGCGGCCAATCTTGCGAACCGCTTTCCA
CGCCCCCTTGTTCCCGAAGTCGTCATCCTCGTACATAAAGGTGGGACCACCATGGGAAAAGAAGT
ACGTGGGGAAGGGCTTGGCGTTGGCAACAAATTTGGCCATCGACATGGGTTCACTGGTGGATTTG
GTTGAGTAAAAGTAGTAGTAAACGATCGAAAGTAGCAATACCGCCGCAGCCACTAGTTTCATCGG
TCGTTTTTGCAGCCATTCGCTTCCTTTATATGGGCCATGCATGATTTGCAATCAGCCTAGGTGAC
GTATCACGTGAGCCGGCGATAGCGGGAGATAGCCGGAGATGTTAGTCAGCATTGGTATATTCATA
TAAACGGTTCAAAAGTATACTAAACAATTCTTTGGTTAGACCACGAGGGCGGTGGCAGCATCAGC
AGCAGAAATCGGCGACGCTGCGGTCTCGACCGTGGCGGGGGGAAG
Right flanking sequence: Indices 55654 -- 56153
GAGGGGAAGGTCAGTAGGAAGTTCGTCCGTAGGTTCGGGCTCGTCAGTGGGGAGGGGCTCGTCAG
TGGGAAGGGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGC
TCGTCAGTAGGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAAC
AGTGGGCTCAACAGTGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCG
TAGGGAGAGGAGTCTCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTC
CCGTTGTGGTGGGGACCATGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCC
TCTGCCACGGCCCTTACCCTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCAC
CACGGCCACCACGGCCGCCACGGCCACCAGCACGGCCACCACGTC
Found at i:55674 original size:48 final size:49
Alignment explanation
Indices: 55608--55710 Score: 145
Period size: 48 Copynumber: 2.1 Consensus size: 49
55598 ACCGTGGCGG
*
55608 GGGGAAGGTCAGTGGGAAGTTCGTCAGTAGG-AAGCTCGTCAGTGGGGA
1 GGGGAAGGTCAGTAGGAAGTTCGTCAGTAGGTAAGCTCGTCAGTGGGGA
* **
55656 GGGGAAGGTCAGTAGGAAGTTCGTCCGTAGGTTCGGGCTCGTCAGTGGGGA
1 GGGGAAGGTCAGTAGGAAGTTCGTCAGTAGG-T-AAGCTCGTCAGTGGGGA
55707 GGGG
1 GGGG
55711 CTCGTCAGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
48 29 0.60
51 19 0.40
ACGTcount: A:0.19, C:0.14, G:0.48, T:0.19
Consensus pattern (49 bp):
GGGGAAGGTCAGTAGGAAGTTCGTCAGTAGGTAAGCTCGTCAGTGGGGA
Left flanking sequence: Indices 55108 -- 55607
GGCAGACACCACGATGATGTAGTCGGGCTGCCACTTCTTGATGGTGCGGCCAATCTTGCGAACCG
CTTTCCACGCCCCCTTGTTCCCGAAGTCGTCATCCTCGTACATAAAGGTGGGACCACCATGGGAA
AAGAAGTACGTGGGGAAGGGCTTGGCGTTGGCAACAAATTTGGCCATCGACATGGGTTCACTGGT
GGATTTGGTTGAGTAAAAGTAGTAGTAAACGATCGAAAGTAGCAATACCGCCGCAGCCACTAGTT
TCATCGGTCGTTTTTGCAGCCATTCGCTTCCTTTATATGGGCCATGCATGATTTGCAATCAGCCT
AGGTGACGTATCACGTGAGCCGGCGATAGCGGGAGATAGCCGGAGATGTTAGTCAGCATTGGTAT
ATTCATATAAACGGTTCAAAAGTATACTAAACAATTCTTTGGTTAGACCACGAGGGCGGTGGCAG
CATCAGCAGCAGAAATCGGCGACGCTGCGGTCTCGACCGTGGCGG
Right flanking sequence: Indices 55711 -- 56210
CTCGTCAGTGGGAAGGGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGG
GGAGAGGCTCGTCAGTAGGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTG
GGCTCAACAGTGGGCTCAACAGTGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAA
CGTGTCCGTAGGGAGAGGAGTCTCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGG
GACCGGTCCCGTTGTGGTGGGGACCATGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTA
CCCTTGCCTCTGCCACGGCCCTTACCCTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACC
TTGGCCACCACGGCCACCACGGCCGCCACGGCCACCAGCACGGCCACCACGTCCCTGGCCACCAC
GGCCACGGCCCCCACGGCCCTTACCGTAGCTTCTGTCATTGTCTT
Found at i:55711 original size:18 final size:18
Alignment explanation
Indices: 55691--55791 Score: 157
Period size: 18 Copynumber: 5.6 Consensus size: 18
55681 CGTAGGTTCG
* *
55691 GGCTCGTCAGTGGGGAGG
1 GGCTCGTCAGTGGGAAGA
*
55709 GGCTCGTCAGTGGGAAGG
1 GGCTCGTCAGTGGGAAGA
55727 GGCTCGTCAGTGGGAAGA
1 GGCTCGTCAGTGGGAAGA
55745 GGCTCGTCAGTGGGAAGA
1 GGCTCGTCAGTGGGAAGA
* *
55763 GGCTCGTCCGTGGGGAGA
1 GGCTCGTCAGTGGGAAGA
55781 GGCTCGTCAGT
1 GGCTCGTCAGT
55792 AGGCTCGGGC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 78 1.00
ACGTcount: A:0.16, C:0.19, G:0.48, T:0.18
Consensus pattern (18 bp):
GGCTCGTCAGTGGGAAGA
Left flanking sequence: Indices 55191 -- 55690
TCCCGAAGTCGTCATCCTCGTACATAAAGGTGGGACCACCATGGGAAAAGAAGTACGTGGGGAAG
GGCTTGGCGTTGGCAACAAATTTGGCCATCGACATGGGTTCACTGGTGGATTTGGTTGAGTAAAA
GTAGTAGTAAACGATCGAAAGTAGCAATACCGCCGCAGCCACTAGTTTCATCGGTCGTTTTTGCA
GCCATTCGCTTCCTTTATATGGGCCATGCATGATTTGCAATCAGCCTAGGTGACGTATCACGTGA
GCCGGCGATAGCGGGAGATAGCCGGAGATGTTAGTCAGCATTGGTATATTCATATAAACGGTTCA
AAAGTATACTAAACAATTCTTTGGTTAGACCACGAGGGCGGTGGCAGCATCAGCAGCAGAAATCG
GCGACGCTGCGGTCTCGACCGTGGCGGGGGGAAGGTCAGTGGGAAGTTCGTCAGTAGGAAGCTCG
TCAGTGGGGAGGGGAAGGTCAGTAGGAAGTTCGTCCGTAGGTTCG
Right flanking sequence: Indices 55792 -- 56291
AGGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTGGGCT
CAACAGTGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGA
GGAGTCTCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTG
GTGGGGACCATGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCAC
GGCCCTTACCCTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCACCACGGCCA
CCACGGCCGCCACGGCCACCAGCACGGCCACCACGTCCCTGGCCACCACGGCCACGGCCCCCACG
GCCCTTACCGTAGCTTCTGTCATTGTCTTCGTCGTCAGACTCGCAGTCCGAGTCGTCGTCCGAGT
CGTCGTCCGAGTCGTGGGGGTGGGTCGAGTTGCGGTCGGGCCAGC
Found at i:55730 original size:36 final size:36
Alignment explanation
Indices: 55690--55809 Score: 168
Period size: 36 Copynumber: 3.3 Consensus size: 36
55680 CCGTAGGTTC
*
55690 GGGCTCGTCAGTGGGGAGGGGCTCGTCAGTGGGAAG
1 GGGCTCGTCAGTGGGGAGAGGCTCGTCAGTGGGAAG
*
55726 GGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAG
1 GGGCTCGTCAGTGGGGAGAGGCTCGTCAGTGGGAAG
* * * ***
55762 AGGCTCGTCCGTGGGGAGAGGCTCGTCAGTAGGCTC
1 GGGCTCGTCAGTGGGGAGAGGCTCGTCAGTGGGAAG
55798 GGGCTCGTCAGT
1 GGGCTCGTCAGT
55810 AGGTTCAGGC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 73 1.00
ACGTcount: A:0.15, C:0.20, G:0.47, T:0.18
Consensus pattern (36 bp):
GGGCTCGTCAGTGGGGAGAGGCTCGTCAGTGGGAAG
Left flanking sequence: Indices 55190 -- 55689
TTCCCGAAGTCGTCATCCTCGTACATAAAGGTGGGACCACCATGGGAAAAGAAGTACGTGGGGAA
GGGCTTGGCGTTGGCAACAAATTTGGCCATCGACATGGGTTCACTGGTGGATTTGGTTGAGTAAA
AGTAGTAGTAAACGATCGAAAGTAGCAATACCGCCGCAGCCACTAGTTTCATCGGTCGTTTTTGC
AGCCATTCGCTTCCTTTATATGGGCCATGCATGATTTGCAATCAGCCTAGGTGACGTATCACGTG
AGCCGGCGATAGCGGGAGATAGCCGGAGATGTTAGTCAGCATTGGTATATTCATATAAACGGTTC
AAAAGTATACTAAACAATTCTTTGGTTAGACCACGAGGGCGGTGGCAGCATCAGCAGCAGAAATC
GGCGACGCTGCGGTCTCGACCGTGGCGGGGGGAAGGTCAGTGGGAAGTTCGTCAGTAGGAAGCTC
GTCAGTGGGGAGGGGAAGGTCAGTAGGAAGTTCGTCCGTAGGTTC
Right flanking sequence: Indices 55810 -- 56309
AGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTGGGCTCAACAGTGGGGATCTCAA
GCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGAGGAGTCTCGGGCCACCCG
TGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTGGTGGGGACCATGGCCCTT
TCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCACGGCCCTTACCCTTGCCCT
TACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCACCACGGCCACCACGGCCGCCACGGCCA
CCAGCACGGCCACCACGTCCCTGGCCACCACGGCCACGGCCCCCACGGCCCTTACCGTAGCTTCT
GTCATTGTCTTCGTCGTCAGACTCGCAGTCCGAGTCGTCGTCCGAGTCGTCGTCCGAGTCGTGGG
GGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCT
Found at i:55803 original size:54 final size:54
Alignment explanation
Indices: 55676--55809 Score: 162
Period size: 54 Copynumber: 2.5 Consensus size: 54
55666 AGTAGGAAGT
* * * * *
55676 TCGTCCGTAGGTTCGGGCTCGTCAGTGGGGAGGGGCTCGTCAGTGGGAAGGGGC
1 TCGTCAGTAGGCTCGGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGC
*** * *
55730 TCGTCAGT-GGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGC
1 TCGTCAGTAGGCTCG-GGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGC
55784 TCGTCAGTAGGCTCGGGCTCGTCAGT
1 TCGTCAGTAGGCTCGGGCTCGTCAGT
55810 AGGTTCAGGC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
53 3 0.05
54 60 0.91
55 3 0.05
ACGTcount: A:0.14, C:0.21, G:0.45, T:0.20
Consensus pattern (54 bp):
TCGTCAGTAGGCTCGGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGC
Left flanking sequence: Indices 55176 -- 55675
TCCACGCCCCCTTGTTCCCGAAGTCGTCATCCTCGTACATAAAGGTGGGACCACCATGGGAAAAG
AAGTACGTGGGGAAGGGCTTGGCGTTGGCAACAAATTTGGCCATCGACATGGGTTCACTGGTGGA
TTTGGTTGAGTAAAAGTAGTAGTAAACGATCGAAAGTAGCAATACCGCCGCAGCCACTAGTTTCA
TCGGTCGTTTTTGCAGCCATTCGCTTCCTTTATATGGGCCATGCATGATTTGCAATCAGCCTAGG
TGACGTATCACGTGAGCCGGCGATAGCGGGAGATAGCCGGAGATGTTAGTCAGCATTGGTATATT
CATATAAACGGTTCAAAAGTATACTAAACAATTCTTTGGTTAGACCACGAGGGCGGTGGCAGCAT
CAGCAGCAGAAATCGGCGACGCTGCGGTCTCGACCGTGGCGGGGGGAAGGTCAGTGGGAAGTTCG
TCAGTAGGAAGCTCGTCAGTGGGGAGGGGAAGGTCAGTAGGAAGT
Right flanking sequence: Indices 55810 -- 56309
AGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTGGGCTCAACAGTGGGGATCTCAA
GCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGAGGAGTCTCGGGCCACCCG
TGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTGGTGGGGACCATGGCCCTT
TCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCACGGCCCTTACCCTTGCCCT
TACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCACCACGGCCACCACGGCCGCCACGGCCA
CCAGCACGGCCACCACGTCCCTGGCCACCACGGCCACGGCCCCCACGGCCCTTACCGTAGCTTCT
GTCATTGTCTTCGTCGTCAGACTCGCAGTCCGAGTCGTCGTCCGAGTCGTCGTCCGAGTCGTGGG
GGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCT
Found at i:55847 original size:12 final size:12
Alignment explanation
Indices: 55838--55866 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
55828 GAGCTCAATG
55838 GTGGGCTCAACA
1 GTGGGCTCAACA
55850 GTGGGCTCAACA
1 GTGGGCTCAACA
55862 GTGGG
1 GTGGG
55867 GATCTCAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.17
Consensus pattern (12 bp):
GTGGGCTCAACA
Left flanking sequence: Indices 55338 -- 55837
AAAGTAGCAATACCGCCGCAGCCACTAGTTTCATCGGTCGTTTTTGCAGCCATTCGCTTCCTTTA
TATGGGCCATGCATGATTTGCAATCAGCCTAGGTGACGTATCACGTGAGCCGGCGATAGCGGGAG
ATAGCCGGAGATGTTAGTCAGCATTGGTATATTCATATAAACGGTTCAAAAGTATACTAAACAAT
TCTTTGGTTAGACCACGAGGGCGGTGGCAGCATCAGCAGCAGAAATCGGCGACGCTGCGGTCTCG
ACCGTGGCGGGGGGAAGGTCAGTGGGAAGTTCGTCAGTAGGAAGCTCGTCAGTGGGGAGGGGAAG
GTCAGTAGGAAGTTCGTCCGTAGGTTCGGGCTCGTCAGTGGGGAGGGGCTCGTCAGTGGGAAGGG
GCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGCTCGTCAGTA
GGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATG
Right flanking sequence: Indices 55867 -- 56366
GATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGAGGAGTCTCGG
GCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTGGTGGGGACCA
TGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCACGGCCCTTACC
CTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCACCACGGCCACCACGGCCGC
CACGGCCACCAGCACGGCCACCACGTCCCTGGCCACCACGGCCACGGCCCCCACGGCCCTTACCG
TAGCTTCTGTCATTGTCTTCGTCGTCAGACTCGCAGTCCGAGTCGTCGTCCGAGTCGTCGTCCGA
GTCGTGGGGGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCTCGGCCAAAGCGG
TCCCCGAGGGAACGACATCGGTCTCGGTAGCATCGTCAGAAGCGC
Found at i:56075 original size:24 final size:24
Alignment explanation
Indices: 56028--56075 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
56018 TTCTTTCCAT
*
56028 GGCCCTTACCCTTGCCTCTGCCAC
1 GGCCCTTACCCTTGCCTCTACCAC
56052 GGCCCTTACCCTTGCC-CTTACCAC
1 GGCCCTTACCCTTGCCTC-TACCAC
56076 CCCAGTGGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.10, C:0.50, G:0.15, T:0.25
Consensus pattern (24 bp):
GGCCCTTACCCTTGCCTCTACCAC
Left flanking sequence: Indices 55528 -- 56027
ACAATTCTTTGGTTAGACCACGAGGGCGGTGGCAGCATCAGCAGCAGAAATCGGCGACGCTGCGG
TCTCGACCGTGGCGGGGGGAAGGTCAGTGGGAAGTTCGTCAGTAGGAAGCTCGTCAGTGGGGAGG
GGAAGGTCAGTAGGAAGTTCGTCCGTAGGTTCGGGCTCGTCAGTGGGGAGGGGCTCGTCAGTGGG
AAGGGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGCTCGT
CAGTAGGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTG
GGCTCAACAGTGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGG
GAGAGGAGTCTCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGT
TGTGGTGGGGACCATGGCCCTTTCTGTGGCCACACTTCTTTCCAT
Right flanking sequence: Indices 56076 -- 56575
CCCAGTGGCGCTTACCAGGCCCACCTTGGCCACCACGGCCACCACGGCCGCCACGGCCACCAGCA
CGGCCACCACGTCCCTGGCCACCACGGCCACGGCCCCCACGGCCCTTACCGTAGCTTCTGTCATT
GTCTTCGTCGTCAGACTCGCAGTCCGAGTCGTCGTCCGAGTCGTCGTCCGAGTCGTGGGGGTGGG
TCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCTCGGCCAAAGCGGTCCCCGAGGGAACG
ACATCGGTCTCGGTAGCATCGTCAGAAGCGCCAGCGCTTTCCTCAGAGTCAAGTTTGCCCCACTT
CCCCCGGTGTCCAGCCGGGTGGGCCAAAACGGTCACAAGACCAGCGGGAGCGAGCAAGATAGAGA
GAATCTGGGAGTACAACATGATGAAGATGAAGTGGAGAACTACCGGTAGCCACCAGGGCTTTATA
TATTGCGGATCCATCCCTTGAAGGGTCTCGACCCCGACGCGCCGA
Found at i:56115 original size:9 final size:9
Alignment explanation
Indices: 56103--56171 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 9
56093 GGCCCACCTT
56103 GGCCACCAC
1 GGCCACCAC
56112 GGCCACCAC
1 GGCCACCAC
*
56121 GGCCGCCAC
1 GGCCACCAC
56130 GGCCACCAGCAC
1 GGCCA-C--CAC
56142 GGCCACCAC
1 GGCCACCAC
* *
56151 -GTC-CC-T
1 GGCCACCAC
56157 GGCCACCAC
1 GGCCACCAC
56166 GGCCAC
1 GGCCAC
56172 GGCCCCCACG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
7 4 0.08
8 4 0.08
9 30 0.62
10 1 0.02
11 1 0.02
12 8 0.17
ACGTcount: A:0.19, C:0.54, G:0.25, T:0.03
Consensus pattern (9 bp):
GGCCACCAC
Left flanking sequence: Indices 55603 -- 56102
GGCGGGGGGAAGGTCAGTGGGAAGTTCGTCAGTAGGAAGCTCGTCAGTGGGGAGGGGAAGGTCAG
TAGGAAGTTCGTCCGTAGGTTCGGGCTCGTCAGTGGGGAGGGGCTCGTCAGTGGGAAGGGGCTCG
TCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGCTCGTCAGTAGGCTC
GGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTGGGCTCAACAG
TGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGAGGAGTC
TCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTGGTGGGG
ACCATGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCACGGCCCT
TACCCTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACCTT
Right flanking sequence: Indices 56172 -- 56671
GGCCCCCACGGCCCTTACCGTAGCTTCTGTCATTGTCTTCGTCGTCAGACTCGCAGTCCGAGTCG
TCGTCCGAGTCGTCGTCCGAGTCGTGGGGGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGG
CAACACCTCGGCCAAAGCGGTCCCCGAGGGAACGACATCGGTCTCGGTAGCATCGTCAGAAGCGC
CAGCGCTTTCCTCAGAGTCAAGTTTGCCCCACTTCCCCCGGTGTCCAGCCGGGTGGGCCAAAACG
GTCACAAGACCAGCGGGAGCGAGCAAGATAGAGAGAATCTGGGAGTACAACATGATGAAGATGAA
GTGGAGAACTACCGGTAGCCACCAGGGCTTTATATATTGCGGATCCATCCCTTGAAGGGTCTCGA
CCCCGACGCGCCGAGGCTATGTGTCAGCGTTGGCTATGCAGCTACACCGTTACGAAACGAGCGGA
AGAGTCGCGACTAGCGCGGATGCAATATGACACACGAAGGGGCTA
Found at i:56175 original size:15 final size:15
Alignment explanation
Indices: 56108--56184 Score: 72
Period size: 15 Copynumber: 5.1 Consensus size: 15
56098 ACCTTGGCCA
56108 CCACGGCCACCACGGCCG
1 CCACGGCCACCAC-G--G
56126 CCACGGCCACCA--G
1 CCACGGCCACCACGG
*
56139 -CACGGCCACCACGT
1 CCACGGCCACCACGG
56153 CC-CTGGCCACCACGG
1 CCAC-GGCCACCACGG
*
56168 CCACGGCCCCCACGG
1 CCACGGCCACCACGG
56183 CC
1 CC
56185 CTTACCGTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
12 11 0.22
13 1 0.02
14 1 0.02
15 25 0.49
16 1 0.02
18 12 0.24
ACGTcount: A:0.17, C:0.56, G:0.25, T:0.03
Consensus pattern (15 bp):
CCACGGCCACCACGG
Left flanking sequence: Indices 55608 -- 56107
GGGGAAGGTCAGTGGGAAGTTCGTCAGTAGGAAGCTCGTCAGTGGGGAGGGGAAGGTCAGTAGGA
AGTTCGTCCGTAGGTTCGGGCTCGTCAGTGGGGAGGGGCTCGTCAGTGGGAAGGGGCTCGTCAGT
GGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGCTCGTCAGTAGGCTCGGGCT
CGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTGGGCTCAACAGTGGGG
ATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGAGGAGTCTCGGG
CCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTGGTGGGGACCAT
GGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCACGGCCCTTACCC
TTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCA
Right flanking sequence: Indices 56185 -- 56684
CTTACCGTAGCTTCTGTCATTGTCTTCGTCGTCAGACTCGCAGTCCGAGTCGTCGTCCGAGTCGT
CGTCCGAGTCGTGGGGGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCTCGGCC
AAAGCGGTCCCCGAGGGAACGACATCGGTCTCGGTAGCATCGTCAGAAGCGCCAGCGCTTTCCTC
AGAGTCAAGTTTGCCCCACTTCCCCCGGTGTCCAGCCGGGTGGGCCAAAACGGTCACAAGACCAG
CGGGAGCGAGCAAGATAGAGAGAATCTGGGAGTACAACATGATGAAGATGAAGTGGAGAACTACC
GGTAGCCACCAGGGCTTTATATATTGCGGATCCATCCCTTGAAGGGTCTCGACCCCGACGCGCCG
AGGCTATGTGTCAGCGTTGGCTATGCAGCTACACCGTTACGAAACGAGCGGAAGAGTCGCGACTA
GCGCGGATGCAATATGACACACGAAGGGGCTAATTCCAGGGGTGC
Found at i:56241 original size:24 final size:24
Alignment explanation
Indices: 56210--56261 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
56200 GTCATTGTCT
56210 TCGTCGTCAGACTCG-CAGTCCGAG
1 TCGTCGTCAGACTCGTC-GTCCGAG
* *
56234 TCGTCGTCCGAGTCGTCGTCCGAG
1 TCGTCGTCAGACTCGTCGTCCGAG
56258 TCGT
1 TCGT
56262 GGGGGTGGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.12, C:0.33, G:0.31, T:0.25
Consensus pattern (24 bp):
TCGTCGTCAGACTCGTCGTCCGAG
Left flanking sequence: Indices 55710 -- 56209
GCTCGTCAGTGGGAAGGGGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTG
GGGAGAGGCTCGTCAGTAGGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGT
GGGCTCAACAGTGGGCTCAACAGTGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCA
ACGTGTCCGTAGGGAGAGGAGTCTCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAG
GGACCGGTCCCGTTGTGGTGGGGACCATGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTT
ACCCTTGCCTCTGCCACGGCCCTTACCCTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCAC
CTTGGCCACCACGGCCACCACGGCCGCCACGGCCACCAGCACGGCCACCACGTCCCTGGCCACCA
CGGCCACGGCCCCCACGGCCCTTACCGTAGCTTCTGTCATTGTCT
Right flanking sequence: Indices 56262 -- 56761
GGGGGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCTCGGCCAAAGCGGTCCCC
GAGGGAACGACATCGGTCTCGGTAGCATCGTCAGAAGCGCCAGCGCTTTCCTCAGAGTCAAGTTT
GCCCCACTTCCCCCGGTGTCCAGCCGGGTGGGCCAAAACGGTCACAAGACCAGCGGGAGCGAGCA
AGATAGAGAGAATCTGGGAGTACAACATGATGAAGATGAAGTGGAGAACTACCGGTAGCCACCAG
GGCTTTATATATTGCGGATCCATCCCTTGAAGGGTCTCGACCCCGACGCGCCGAGGCTATGTGTC
AGCGTTGGCTATGCAGCTACACCGTTACGAAACGAGCGGAAGAGTCGCGACTAGCGCGGATGCAA
TATGACACACGAAGGGGCTAATTCCAGGGGTGCATAGATCGTGTTGGCGGGTAGCCGCGTGGTTG
CGGAGCGTTACAGCCCCACCACACAATGGCAGGGTCTTTTAGTGT
Found at i:56244 original size:12 final size:12
Alignment explanation
Indices: 56227--56261 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
56217 CAGACTCGCA
56227 GTCCGAGTCGTC
1 GTCCGAGTCGTC
56239 GTCCGAGTCGTC
1 GTCCGAGTCGTC
56251 GTCCGAGTCGT
1 GTCCGAGTCGT
56262 GGGGGTGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.31, G:0.34, T:0.26
Consensus pattern (12 bp):
GTCCGAGTCGTC
Left flanking sequence: Indices 55727 -- 56226
GGCTCGTCAGTGGGAAGAGGCTCGTCAGTGGGAAGAGGCTCGTCCGTGGGGAGAGGCTCGTCAGT
AGGCTCGGGCTCGTCAGTAGGTTCAGGCACGGTGGGGAGCTCAATGGTGGGCTCAACAGTGGGCT
CAACAGTGGGGATCTCAAGCAGCAAAGAGACGGAAGGAACCTCACTCAACGTGTCCGTAGGGAGA
GGAGTCTCGGGCCACCCGTGGGTGTGGGACCCGGTGTGGTGCCACCAGGGACCGGTCCCGTTGTG
GTGGGGACCATGGCCCTTTCTGTGGCCACACTTCTTTCCATGGCCCTTACCCTTGCCTCTGCCAC
GGCCCTTACCCTTGCCCTTACCACCCCAGTGGCGCTTACCAGGCCCACCTTGGCCACCACGGCCA
CCACGGCCGCCACGGCCACCAGCACGGCCACCACGTCCCTGGCCACCACGGCCACGGCCCCCACG
GCCCTTACCGTAGCTTCTGTCATTGTCTTCGTCGTCAGACTCGCA
Right flanking sequence: Indices 56262 -- 56761
GGGGGTGGGTCGAGTTGCGGTCGGGCCAGCCACCAGTGGGCAACACCTCGGCCAAAGCGGTCCCC
GAGGGAACGACATCGGTCTCGGTAGCATCGTCAGAAGCGCCAGCGCTTTCCTCAGAGTCAAGTTT
GCCCCACTTCCCCCGGTGTCCAGCCGGGTGGGCCAAAACGGTCACAAGACCAGCGGGAGCGAGCA
AGATAGAGAGAATCTGGGAGTACAACATGATGAAGATGAAGTGGAGAACTACCGGTAGCCACCAG
GGCTTTATATATTGCGGATCCATCCCTTGAAGGGTCTCGACCCCGACGCGCCGAGGCTATGTGTC
AGCGTTGGCTATGCAGCTACACCGTTACGAAACGAGCGGAAGAGTCGCGACTAGCGCGGATGCAA
TATGACACACGAAGGGGCTAATTCCAGGGGTGCATAGATCGTGTTGGCGGGTAGCCGCGTGGTTG
CGGAGCGTTACAGCCCCACCACACAATGGCAGGGTCTTTTAGTGT
Found at i:58105 original size:11 final size:11
Alignment explanation
Indices: 58089--58207 Score: 130
Period size: 11 Copynumber: 10.8 Consensus size: 11
58079 CATGAATTGG
58089 ACACTGGTTGC
1 ACACTGGTTGC
58100 ACACTGGTTGC
1 ACACTGGTTGC
*
58111 ACACTGGTAGC
1 ACACTGGTTGC
* *
58122 ACATTAGTTGC
1 ACACTGGTTGC
* *
58133 ACATTAGTTGC
1 ACACTGGTTGC
*
58144 ACATTGGTTGC
1 ACACTGGTTGC
58155 ACACTGGTTGC
1 ACACTGGTTGC
*
58166 ACATTGGTTGC
1 ACACTGGTTGC
***
58177 ACACTGGCAAC
1 ACACTGGTTGC
**
58188 ACACTGGCAGC
1 ACACTGGTTGC
58199 ACACTGGTT
1 ACACTGGTT
58208 ACGATATGGG
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 94 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (11 bp):
ACACTGGTTGC
Left flanking sequence: Indices 57589 -- 58088
GAGCCCCACGTCGCCGGAACTAGTGTCTCTCGCTTTCTCTCCGCCACCACGCCAACGGTTGCGCC
CGTCTTGCTAGCATCATCGTCATGCAGCACGCGAGCCCTGGCGCCCGCGCAATAATAAACAGAGC
AATTTCACAGTAGCCACTTCAGTTGTTGTTTATCACCCCAATTGCCCGGTCTCTGTTGTGTTTAG
CGGCCTCCTAATTGTATTTCCCCCCAGAAACCCTATCCCGCTAGCCAACCGAGCATGGTCAATTT
GTTTTCGTCGTCGAGACGGGTAAGTAACCCCTGGACGCCGCAGGCGTACCGAGAGGATCCGAGGA
ATGTGGCCACCGGAACGGAATGGCGAAGGGATGCCAAGTGCCGTGGTGGAACGTGGATGGATTGT
GCGAAGTGACATGGTGGCTGTGACGTGCGGAAGCCCCGCCGAGGTGAGGATTGTTGCGATGGAGA
GATGCTGGTAGAGATACTGGTAATGAGCTGTGATTCATGAATTGG
Right flanking sequence: Indices 58208 -- 58707
ACGATATGGGTACCTCATGAGCACATCATGAACACACCAGTTGCAGACGAGTTACAGACCAGTCA
CAGACCAGTCACAGACCAATTGCAAATCAGTTGCACACTAGTTGCACACTAGTTGAGCACTAGTT
GTACAACATTTTCAAACAAGTTGTACACCAATTGCACCAATTGCACAATAGTTAACACAGGCTCA
CACTCAAGCAACTAATACCACCTACGACTGATCTACAGAGCCTGCTGCAAACCACCTACACCACC
ACTCACCACACCACCCACACCAACCACCACCACCCTTAAACCGCCCATTTCCCTCACCCACTTCC
CCACCACTTCCTCCATCAATCATCTCTCCCCCCCTCCCATACTAACCTCCAGCGAAGTAACAACT
ACCAGGGCTTTGCCAAGTACCAGGACGAGCTCAACCGCTACCAGAGCCAGCAGCAGCTGGCCCCG
TTCATCCTGAAAACCGCCGCTGCCGGCGCAGGCAACGCGGCCGCC
Found at i:58117 original size:22 final size:22
Alignment explanation
Indices: 58089--58183 Score: 145
Period size: 22 Copynumber: 4.3 Consensus size: 22
58079 CATGAATTGG
*
58089 ACACTGGTTGCACACTGGTTGC
1 ACACTGGTTGCACATTGGTTGC
* *
58111 ACACTGGTAGCACATTAGTTGC
1 ACACTGGTTGCACATTGGTTGC
* *
58133 ACATTAGTTGCACATTGGTTGC
1 ACACTGGTTGCACATTGGTTGC
58155 ACACTGGTTGCACATTGGTTGC
1 ACACTGGTTGCACATTGGTTGC
58177 ACACTGG
1 ACACTGG
58184 CAACACACTG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 64 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (22 bp):
ACACTGGTTGCACATTGGTTGC
Left flanking sequence: Indices 57589 -- 58088
GAGCCCCACGTCGCCGGAACTAGTGTCTCTCGCTTTCTCTCCGCCACCACGCCAACGGTTGCGCC
CGTCTTGCTAGCATCATCGTCATGCAGCACGCGAGCCCTGGCGCCCGCGCAATAATAAACAGAGC
AATTTCACAGTAGCCACTTCAGTTGTTGTTTATCACCCCAATTGCCCGGTCTCTGTTGTGTTTAG
CGGCCTCCTAATTGTATTTCCCCCCAGAAACCCTATCCCGCTAGCCAACCGAGCATGGTCAATTT
GTTTTCGTCGTCGAGACGGGTAAGTAACCCCTGGACGCCGCAGGCGTACCGAGAGGATCCGAGGA
ATGTGGCCACCGGAACGGAATGGCGAAGGGATGCCAAGTGCCGTGGTGGAACGTGGATGGATTGT
GCGAAGTGACATGGTGGCTGTGACGTGCGGAAGCCCCGCCGAGGTGAGGATTGTTGCGATGGAGA
GATGCTGGTAGAGATACTGGTAATGAGCTGTGATTCATGAATTGG
Right flanking sequence: Indices 58184 -- 58683
CAACACACTGGCAGCACACTGGTTACGATATGGGTACCTCATGAGCACATCATGAACACACCAGT
TGCAGACGAGTTACAGACCAGTCACAGACCAGTCACAGACCAATTGCAAATCAGTTGCACACTAG
TTGCACACTAGTTGAGCACTAGTTGTACAACATTTTCAAACAAGTTGTACACCAATTGCACCAAT
TGCACAATAGTTAACACAGGCTCACACTCAAGCAACTAATACCACCTACGACTGATCTACAGAGC
CTGCTGCAAACCACCTACACCACCACTCACCACACCACCCACACCAACCACCACCACCCTTAAAC
CGCCCATTTCCCTCACCCACTTCCCCACCACTTCCTCCATCAATCATCTCTCCCCCCCTCCCATA
CTAACCTCCAGCGAAGTAACAACTACCAGGGCTTTGCCAAGTACCAGGACGAGCTCAACCGCTAC
CAGAGCCAGCAGCAGCTGGCCCCGTTCATCCTGAAAACCGCCGCT
Found at i:58289 original size:11 final size:11
Alignment explanation
Indices: 58251--58290 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
58241 ACACCAGTTG
* *
58251 CAGACGAGTTA
1 CAGACCAGTCA
58262 CAGACCAGTCA
1 CAGACCAGTCA
58273 CAGACCAGTCA
1 CAGACCAGTCA
58284 CAGACCA
1 CAGACCA
58291 ATTGCAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.38, C:0.33, G:0.20, T:0.10
Consensus pattern (11 bp):
CAGACCAGTCA
Left flanking sequence: Indices 57751 -- 58250
TCACCCCAATTGCCCGGTCTCTGTTGTGTTTAGCGGCCTCCTAATTGTATTTCCCCCCAGAAACC
CTATCCCGCTAGCCAACCGAGCATGGTCAATTTGTTTTCGTCGTCGAGACGGGTAAGTAACCCCT
GGACGCCGCAGGCGTACCGAGAGGATCCGAGGAATGTGGCCACCGGAACGGAATGGCGAAGGGAT
GCCAAGTGCCGTGGTGGAACGTGGATGGATTGTGCGAAGTGACATGGTGGCTGTGACGTGCGGAA
GCCCCGCCGAGGTGAGGATTGTTGCGATGGAGAGATGCTGGTAGAGATACTGGTAATGAGCTGTG
ATTCATGAATTGGACACTGGTTGCACACTGGTTGCACACTGGTAGCACATTAGTTGCACATTAGT
TGCACATTGGTTGCACACTGGTTGCACATTGGTTGCACACTGGCAACACACTGGCAGCACACTGG
TTACGATATGGGTACCTCATGAGCACATCATGAACACACCAGTTG
Right flanking sequence: Indices 58291 -- 58790
ATTGCAAATCAGTTGCACACTAGTTGCACACTAGTTGAGCACTAGTTGTACAACATTTTCAAACA
AGTTGTACACCAATTGCACCAATTGCACAATAGTTAACACAGGCTCACACTCAAGCAACTAATAC
CACCTACGACTGATCTACAGAGCCTGCTGCAAACCACCTACACCACCACTCACCACACCACCCAC
ACCAACCACCACCACCCTTAAACCGCCCATTTCCCTCACCCACTTCCCCACCACTTCCTCCATCA
ATCATCTCTCCCCCCCTCCCATACTAACCTCCAGCGAAGTAACAACTACCAGGGCTTTGCCAAGT
ACCAGGACGAGCTCAACCGCTACCAGAGCCAGCAGCAGCTGGCCCCGTTCATCCTGAAAACCGCC
GCTGCCGGCGCAGGCAACGCGGCCGCCGCCGCCATGCGGATGCACCTGGGCAACTCGCCACAGCC
CCAGGCCCGCAAGCCCGCGGCCGGCCGGCTGATGCTGATGACAGG
Found at i:58315 original size:11 final size:11
Alignment explanation
Indices: 58301--58338 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
58291 ATTGCAAATC
58301 AGTTGCACACT
1 AGTTGCACACT
58312 AGTTGCACACT
1 AGTTGCACACT
58323 AGTTG-AGCACT
1 AGTTGCA-CACT
58334 AGTTG
1 AGTTG
58339 TACAACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 1 0.04
11 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (11 bp):
AGTTGCACACT
Left flanking sequence: Indices 57801 -- 58300
TTCCCCCCAGAAACCCTATCCCGCTAGCCAACCGAGCATGGTCAATTTGTTTTCGTCGTCGAGAC
GGGTAAGTAACCCCTGGACGCCGCAGGCGTACCGAGAGGATCCGAGGAATGTGGCCACCGGAACG
GAATGGCGAAGGGATGCCAAGTGCCGTGGTGGAACGTGGATGGATTGTGCGAAGTGACATGGTGG
CTGTGACGTGCGGAAGCCCCGCCGAGGTGAGGATTGTTGCGATGGAGAGATGCTGGTAGAGATAC
TGGTAATGAGCTGTGATTCATGAATTGGACACTGGTTGCACACTGGTTGCACACTGGTAGCACAT
TAGTTGCACATTAGTTGCACATTGGTTGCACACTGGTTGCACATTGGTTGCACACTGGCAACACA
CTGGCAGCACACTGGTTACGATATGGGTACCTCATGAGCACATCATGAACACACCAGTTGCAGAC
GAGTTACAGACCAGTCACAGACCAGTCACAGACCAATTGCAAATC
Right flanking sequence: Indices 58339 -- 58838
TACAACATTTTCAAACAAGTTGTACACCAATTGCACCAATTGCACAATAGTTAACACAGGCTCAC
ACTCAAGCAACTAATACCACCTACGACTGATCTACAGAGCCTGCTGCAAACCACCTACACCACCA
CTCACCACACCACCCACACCAACCACCACCACCCTTAAACCGCCCATTTCCCTCACCCACTTCCC
CACCACTTCCTCCATCAATCATCTCTCCCCCCCTCCCATACTAACCTCCAGCGAAGTAACAACTA
CCAGGGCTTTGCCAAGTACCAGGACGAGCTCAACCGCTACCAGAGCCAGCAGCAGCTGGCCCCGT
TCATCCTGAAAACCGCCGCTGCCGGCGCAGGCAACGCGGCCGCCGCCGCCATGCGGATGCACCTG
GGCAACTCGCCACAGCCCCAGGCCCGCAAGCCCGCGGCCGGCCGGCTGATGCTGATGACAGGCGC
CCCCCGCAAGTACGTGTACAACCCGAAGCCGCTGTACCACACGGG
Found at i:58481 original size:24 final size:24
Alignment explanation
Indices: 58453--58500 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
58443 CCTGCTGCAA
*
58453 ACCACCTACACC-ACCACTCACCAC
1 ACCACCCACACCAACCAC-CACCAC
58477 ACCACCCACACCAACCACCACCAC
1 ACCACCCACACCAACCACCACCAC
58501 CCTTAAACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.35, C:0.60, G:0.00, T:0.04
Consensus pattern (24 bp):
ACCACCCACACCAACCACCACCAC
Left flanking sequence: Indices 57953 -- 58452
GCCGTGGTGGAACGTGGATGGATTGTGCGAAGTGACATGGTGGCTGTGACGTGCGGAAGCCCCGC
CGAGGTGAGGATTGTTGCGATGGAGAGATGCTGGTAGAGATACTGGTAATGAGCTGTGATTCATG
AATTGGACACTGGTTGCACACTGGTTGCACACTGGTAGCACATTAGTTGCACATTAGTTGCACAT
TGGTTGCACACTGGTTGCACATTGGTTGCACACTGGCAACACACTGGCAGCACACTGGTTACGAT
ATGGGTACCTCATGAGCACATCATGAACACACCAGTTGCAGACGAGTTACAGACCAGTCACAGAC
CAGTCACAGACCAATTGCAAATCAGTTGCACACTAGTTGCACACTAGTTGAGCACTAGTTGTACA
ACATTTTCAAACAAGTTGTACACCAATTGCACCAATTGCACAATAGTTAACACAGGCTCACACTC
AAGCAACTAATACCACCTACGACTGATCTACAGAGCCTGCTGCAA
Right flanking sequence: Indices 58501 -- 59000
CCTTAAACCGCCCATTTCCCTCACCCACTTCCCCACCACTTCCTCCATCAATCATCTCTCCCCCC
CTCCCATACTAACCTCCAGCGAAGTAACAACTACCAGGGCTTTGCCAAGTACCAGGACGAGCTCA
ACCGCTACCAGAGCCAGCAGCAGCTGGCCCCGTTCATCCTGAAAACCGCCGCTGCCGGCGCAGGC
AACGCGGCCGCCGCCGCCATGCGGATGCACCTGGGCAACTCGCCACAGCCCCAGGCCCGCAAGCC
CGCGGCCGGCCGGCTGATGCTGATGACAGGCGCCCCCCGCAAGTACGTGTACAACCCGAAGCCGC
TGTACCACACGGGCCCGCTGCTGCCACAGCAACCGGCGCGCCGGGCGCTGAGCTTGACCGGGCCC
CGCCGGCTCCTGATCGACCAGATCGTCAACGACGACGCCGACGACGACGACGACGTGGTCATCAC
CACCAAAACCACGCGGGTGGTGGACCTGGCCGGACGCACCCAGCT
Found at i:60058 original size:21 final size:21
Alignment explanation
Indices: 60034--60085 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
60024 GCGGCGGGCC
60034 GAGGAGAAGGCCGCCAAG-CAG
1 GAGGAGAAGGCCGCC-AGCCAG
* *
60055 GAGGAAAAGGCCGCCCGCCAG
1 GAGGAGAAGGCCGCCAGCCAG
60076 GAGGAGAAGG
1 GAGGAGAAGG
60086 AGGCCCGTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.33, C:0.23, G:0.44, T:0.00
Consensus pattern (21 bp):
GAGGAGAAGGCCGCCAGCCAG
Left flanking sequence: Indices 59534 -- 60033
ACATGCCGCTGCCGTCCCAGCTGGAGGCGTTGGCGCTGCCGCCCGGGCTGATCAAGTTCAACAAC
ATGGTGGAGACCCGCCACTACTACGACGACACCCCGAAGCCGCGGGTGCTGCTGCCCGGGCCGCA
CACGGCGATGCCTCCGGCGCCCAAGCGAGGCACCAACAAGGAGGGGTTGCCCACGGCGCTGCTGC
TGGTGCCTCTGGCGGACTTCTACGCGGCCGCGCTCGAGGCTGCGCACAAGAAGGTGTACGGCGAC
CGCGAGGTGGGTGCTGTGGTGGCTCCGCCCGAGCTGCCGCCGCAGACGCTGCCCAAGGTGTTTGC
CAAGCCGTTCAGCGCCAAGCCCAGCGTGGGTCCCGTGACGGCCGCGGCGATGGCCGCCCAGGACG
AGGGCGTGCAGCCCAACTACAACTACGAGAACCACCACCGCGGGTTCGTGGGGATGCTGTTGCGC
GACGGAGTGCCGCTGAAGAAGGACGAGAAGAAGCAGCGGCGGGCC
Right flanking sequence: Indices 60086 -- 60585
AGGCCCGTCAGGAGGCCAAGCGCGAGCGGCGCTACTCCAGCGACGACGACGAGCCCAAGAAGCGC
AAGTTCGGGTTGTTTGGGCGGCGCAAGCTGGTGCAGCACCAGCAGCCCCAGTTGGAGCCTGCGGC
CCCGGTGGAGCCCGAGGACTCGCGCACGCTGTTCACCGAGACGTACCCGCTGCGGGCCCACCACC
TGCTGCCGCCACCCGCGGACTCGCACGCGTTGCCGCTGCCGCAGCAGAAGCTGGGGTTCAAGGAC
AAGTTGAAGCGGAGCGGGAACAAGATGTTTGAGAAGTTTGAGTCGCCGGTGGGAGGCCAGGGACA
GAGTCGTGGACTGGAGGGTGTTAGTCATGGCCACGAGGGTGTTGGTCAGAGCCAGGGACAGAGCT
ACGGACAGGAGAGTGGTGTTCAGAGCCATGACCACGAGGCTGGTGTTGGTTATGGCCAAGAGGTT
GGTGGTCACAGCAATGTGGCTGGTCAGTCCCAGGCCTATGGTCAA
Found at i:60091 original size:21 final size:21
Alignment explanation
Indices: 60052--60100 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
60042 GGCCGCCAAG
*
60052 CAGGAGGAAAAGGCCGCCCGC
1 CAGGAGGAAAAGGACGCCCGC
* * *
60073 CAGGAGGAGAAGGAGGCCCGT
1 CAGGAGGAAAAGGACGCCCGC
60094 CAGGAGG
1 CAGGAGG
60101 CCAAGCGCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.45, T:0.02
Consensus pattern (21 bp):
CAGGAGGAAAAGGACGCCCGC
Left flanking sequence: Indices 59552 -- 60051
AGCTGGAGGCGTTGGCGCTGCCGCCCGGGCTGATCAAGTTCAACAACATGGTGGAGACCCGCCAC
TACTACGACGACACCCCGAAGCCGCGGGTGCTGCTGCCCGGGCCGCACACGGCGATGCCTCCGGC
GCCCAAGCGAGGCACCAACAAGGAGGGGTTGCCCACGGCGCTGCTGCTGGTGCCTCTGGCGGACT
TCTACGCGGCCGCGCTCGAGGCTGCGCACAAGAAGGTGTACGGCGACCGCGAGGTGGGTGCTGTG
GTGGCTCCGCCCGAGCTGCCGCCGCAGACGCTGCCCAAGGTGTTTGCCAAGCCGTTCAGCGCCAA
GCCCAGCGTGGGTCCCGTGACGGCCGCGGCGATGGCCGCCCAGGACGAGGGCGTGCAGCCCAACT
ACAACTACGAGAACCACCACCGCGGGTTCGTGGGGATGCTGTTGCGCGACGGAGTGCCGCTGAAG
AAGGACGAGAAGAAGCAGCGGCGGGCCGAGGAGAAGGCCGCCAAG
Right flanking sequence: Indices 60101 -- 60600
CCAAGCGCGAGCGGCGCTACTCCAGCGACGACGACGAGCCCAAGAAGCGCAAGTTCGGGTTGTTT
GGGCGGCGCAAGCTGGTGCAGCACCAGCAGCCCCAGTTGGAGCCTGCGGCCCCGGTGGAGCCCGA
GGACTCGCGCACGCTGTTCACCGAGACGTACCCGCTGCGGGCCCACCACCTGCTGCCGCCACCCG
CGGACTCGCACGCGTTGCCGCTGCCGCAGCAGAAGCTGGGGTTCAAGGACAAGTTGAAGCGGAGC
GGGAACAAGATGTTTGAGAAGTTTGAGTCGCCGGTGGGAGGCCAGGGACAGAGTCGTGGACTGGA
GGGTGTTAGTCATGGCCACGAGGGTGTTGGTCAGAGCCAGGGACAGAGCTACGGACAGGAGAGTG
GTGTTCAGAGCCATGACCACGAGGCTGGTGTTGGTTATGGCCAAGAGGTTGGTGGTCACAGCAAT
GTGGCTGGTCAGTCCCAGGCCTATGGTCAATCTCACGATGGCCAC
Found at i:60836 original size:30 final size:30
Alignment explanation
Indices: 60800--60864 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
60790 GCGATCGTCG
60800 AGGAGTCCGAGCCCGTGGACCCCATCGCCA
1 AGGAGTCCGAGCCCGTGGACCCCATCGCCA
* * * * *
60830 AGGAGTCCGAGTCTGTTGACCCGATCGCGA
1 AGGAGTCCGAGCCCGTGGACCCCATCGCCA
60860 AGGAG
1 AGGAG
60865 CCTCTTGACG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.34, T:0.14
Consensus pattern (30 bp):
AGGAGTCCGAGCCCGTGGACCCCATCGCCA
Left flanking sequence: Indices 60300 -- 60799
CTCGCACGCGTTGCCGCTGCCGCAGCAGAAGCTGGGGTTCAAGGACAAGTTGAAGCGGAGCGGGA
ACAAGATGTTTGAGAAGTTTGAGTCGCCGGTGGGAGGCCAGGGACAGAGTCGTGGACTGGAGGGT
GTTAGTCATGGCCACGAGGGTGTTGGTCAGAGCCAGGGACAGAGCTACGGACAGGAGAGTGGTGT
TCAGAGCCATGACCACGAGGCTGGTGTTGGTTATGGCCAAGAGGTTGGTGGTCACAGCAATGTGG
CTGGTCAGTCCCAGGCCTATGGTCAATCTCACGATGGCCACCAGCTTGGCCACAGCCACGAGGCT
GAGCAATCTCAGGCCTACCCCCACTCTCAGGATGCTGGCGAGCCTGGCTCGGTCCAGCCCGCTTC
CCAGCCCACCCGCAAGCCCGTTCCTTCGCCCCTTGATGGGCCTATTGAGACTCCCTCGCACCACT
TGGGCTCCCGCAACGTCGCCAGCCCGTCGCAGCCCGCGATCGTCG
Right flanking sequence: Indices 60865 -- 61364
CCTCTTGACGAACCCATCCAGGCAGGCCCCACCAATCTCAACCCGCCGGCCCAGCCCGCGCAGTA
CGACCTGTTGGCGCCCACGCTTGCCGGAGCCGCCGCGGGAGCAGCCCTAGGCGCTGGCGCAGGCA
TGGCGGGCTCGCATCTCCGCACGCCTTCTGCGGTGACCCCCGGCCTGAGCGTGTCGGAGGTGGTG
ACTGACGTCATCGCCGAGGACCCCGTCGAGGAGGAGCTCGCGCCGCTCGCCACCACCGTCAAGGA
GCTGGTGGAGCCCGAGCCGGTGTCGGAGCCCGAGCGCAACGTGTCGGTGCCGTCCACGAGCTTTG
TGGCGGGCGCCGAGCCGCCGCAGCACGACGAGCCGGTGGTGCCCGTGGTGGTGCTGTTGGCGGAG
CCGAGTCAGAAGGAGGCGTCCGAGTTGGGCCAGAAGGAGGGCCCGAAGGCTGTTCCGGAGACTTC
CGAGGTTCATGGCCAGGCGAAGCCCGAGATCCCTGCCTTCCAGGG
Found at i:62093 original size:30 final size:30
Alignment explanation
Indices: 62058--62133 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
62048 GGGACGCACA
* * *
62058 GTCTCTGGTGTCTCACAAGGATACTCAGGC
1 GTCTCTGGTGTCTCACAAGGACACACAAGC
* *
62088 GTCTCTGTTGTCCCACAAGGACACACAAGC
1 GTCTCTGGTGTCTCACAAGGACACACAAGC
*
62118 GTCGCTGGTGTCTCAC
1 GTCTCTGGTGTCTCAC
62134 GACCCCCTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.25
Consensus pattern (30 bp):
GTCTCTGGTGTCTCACAAGGACACACAAGC
Left flanking sequence: Indices 61558 -- 62057
TCTACCCCACCGCCGTCTGCGCCCCTGGCCGAGCTCAGCCCGCGCTCCATCCTGGAGCCCTTTGA
CGGCCACCGCCTCTCGGCCGAGGAGGCCGCGGCCATGAACCACAGCCACCGCAGCCCGAAGCAAC
CGCTGAAACTGCCAAGACTGCCCCAGCCCGTGCACAAGCACCACCAGGGCGCGGCCGCGGTCGCT
GGCGCAGGCGCTGCGGGCGCAGGAGCCGCGGCCACCGCTGGCGTCCTCGCCCACCCGCTGGTGTC
GGAGCCGTTCAACGGCCACCGGTTGTCGGCACGCGAGAGCGAGCAGTTGCGGCGCAAGTCGCTGG
TGGGCTCGGCCCACGGCCCGGTGTCGCCTCCGTTCAACGGGCACCCGCTCACGGCGCGCGAGGCC
GAGCAGCTCCACGCGGACCCTGCGTCGCTTGGGGCTCCCGCCAACTTAGAGGCCGCGGCTCCGTT
GGGTGGAGCTGCCGTGCCTGGTGAGGCTCAGGTGAGGGACGCACA
Right flanking sequence: Indices 62134 -- 62633
GACCCCCTGGACAAGGAGTACCTGGGCATCAAGGGCAAGCTCGAGAAGATGGTGGACAAGTACGA
GGAGCCCGTCAAGGACCCGCAGGAGATCCGCGACAAGGAGTCGGGCATCGCCGACGCCTTCCTTG
AGCCCGTCAAGGACCCCGAGGAGATTGCGAACAAGGAGTCTGCGGTGGCGGATGCCTATCTCCAG
CCCGTTGAGGACCCGCTGGAGCTCCGGGAGAAGGAGCTCGAGGCCGTCGACCGCTACGACCAGCC
CGCGCAGAGCCCCCAGGTGGTGGCCAACAAGGAGGCGGCGGTGGCGGACGCGTACTTGGCGCCCG
TCGAGGACCCGGACGCGGTGGCGTACCGCGAGGAGAAGGCGGCCGACGCCTACTTGGAGCCCGTG
GAGGACCCCGAGGCGTTGGCCAAGCGCGAGTCTGCGGCGGTCGACCGCTTCGAGGAGCCTGTCCC
AGTGGCCGTGGACGAGCCCAAAAAGTCGGTGGAGCCCACGAAAAC
Found at i:62644 original size:21 final size:21
Alignment explanation
Indices: 62620--62678 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
62610 AAAGTCGGTG
62620 GAGCCCACGAAAACCGTGGAC
1 GAGCCCACGAAAACCGTGGAC
* *
62641 GAGCCCA-GAAAGCCTTTGGAC
1 GAGCCCACGAAAACC-GTGGAC
*
62662 GAGCCCACCAAAACCGT
1 GAGCCCACGAAAACCGT
62679 ACCTGCCCCG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 6 0.19
21 20 0.65
22 5 0.16
ACGTcount: A:0.32, C:0.34, G:0.25, T:0.08
Consensus pattern (21 bp):
GAGCCCACGAAAACCGTGGAC
Left flanking sequence: Indices 62120 -- 62619
CGCTGGTGTCTCACGACCCCCTGGACAAGGAGTACCTGGGCATCAAGGGCAAGCTCGAGAAGATG
GTGGACAAGTACGAGGAGCCCGTCAAGGACCCGCAGGAGATCCGCGACAAGGAGTCGGGCATCGC
CGACGCCTTCCTTGAGCCCGTCAAGGACCCCGAGGAGATTGCGAACAAGGAGTCTGCGGTGGCGG
ATGCCTATCTCCAGCCCGTTGAGGACCCGCTGGAGCTCCGGGAGAAGGAGCTCGAGGCCGTCGAC
CGCTACGACCAGCCCGCGCAGAGCCCCCAGGTGGTGGCCAACAAGGAGGCGGCGGTGGCGGACGC
GTACTTGGCGCCCGTCGAGGACCCGGACGCGGTGGCGTACCGCGAGGAGAAGGCGGCCGACGCCT
ACTTGGAGCCCGTGGAGGACCCCGAGGCGTTGGCCAAGCGCGAGTCTGCGGCGGTCGACCGCTTC
GAGGAGCCTGTCCCAGTGGCCGTGGACGAGCCCAAAAAGTCGGTG
Right flanking sequence: Indices 62679 -- 63178
ACCTGCCCCGTCTTCGGACGGTGTAGGCACTGGAGGCTCTGGCGTGGCCACAGGCGCTGGTGTGG
CTGCTGGAGCCGCGGCCGCTGCGGCGGCGGTGGCTGGCATCCACCACGGGATGGGCCACGAGCAC
AAGCCGGCCCAGGACCCCGCGGTGGTGGCGGTCAAGGAAACCAAGACCACGCCCGCACACGCTCC
GGGCCAGCCTGCGGCGGTAGCAGCCTCCCAGGCGGTCCACTCGTCGCAGAACCCGCTGACGAGCC
CGAAACTGGCCCAGCCGCTGCCGGCCCAGGCCGCCAAGGTGGCTGCGTCGCAACCGACTCCCCCG
GTGGCCCGGATCCCCGCCAAGGAGGAGCTGGGCAACTACGAGCGGCCGGTCAAGCCCATGCTCCG
CGACCCGGACCACCCGGACGCCCACTCGACGTTGGACCCCCAGGTGCGGTCAGCGCTGACGGGAG
CCCAGCTGTTCACGGGGGCCAAGACCGGGCTCGACAAGCCGTTGG
Found at i:63979 original size:24 final size:24
Alignment explanation
Indices: 63916--63979 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 24
63906 TGATCTTAAG
*
63916 ACCAACCAATTGGGTCAGGCTGAC
1 ACCAACCAATTGGGTGAGGCTGAC
* * * *
63940 ACCAGCCACTTAGGTGAGGTTGAC
1 ACCAACCAATTGGGTGAGGCTGAC
**
63964 ACCAACCGTTTGGGTG
1 ACCAACCAATTGGGTG
63980 GTCAGCTGGG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (24 bp):
ACCAACCAATTGGGTGAGGCTGAC
Left flanking sequence: Indices 63416 -- 63915
CCATCTCGCTGCCGGTGCAGGTGGTGCACACCGACGGACGCAGCTCGCAGTTTGAGGAGACCGCG
AAGCAGGCAGAGACGTCGGAGGCTTCGGAGGCGCCACCGGTGATTCCCGAGGGCGACTACCACTC
GCTCGACCCGATGTCGCCGCGGAACCTGGTGTTGCGCAAGTCTGCGCCGCTGAGTCCCGAGATGG
CGCGGGTGGCTCCCAAGACGGACGAGGCGCCTGGTTTGGTGGTTCCCAACCCGCTGGCGGTGCCC
GAGGACGCGCTCCTGACCACCGCGGTCAAGGGGTTGCCCACGCTGGCGGAGTTGCTCGAGCCGCT
GTCCGACCCGCACAAGTGGGGCGTGGGCACGGCGCTGGCGATTGCCGGAGCCGTGGGGGGGCTGG
CGTTGGCGAAGGACAAGGGAGAGGTTGGTGTTGACCGCCTGGGTGAGAAGGGTGAGGTCAGCAAC
CGTTTGGCTGAGAAGGATGTCACTGCCAATGTGGGTGATCTTAAG
Right flanking sequence: Indices 63980 -- 64479
GTCAGCTGGGTGCTCAGTTGGATACTCAGCTGGGTGGTCAGGGTGAACAGGGCTCTGAAGCAATT
GCCACCGAGGCGGCTCCGTTGCCCAAGGCCCGCGACGAGGTGTCCAAGGACGCGTTCACCACCCC
TACCCTCGGCTCAGGCTTCGAGTCCCACCCCACGGGCTTAACCTCCAACCAGGAGTACGGCATGG
TGGAGCCCGAGATCGACGACCTGGACAACGACGAGGAGTTCACCACGCCTCCGCCGGAGGTGATG
CGCGAGCGCCTGATCAAGCGCAACTGGGCGGACGCCCCCACCGCTCCCGAGATCGCTCCCAAGGC
CTCGGAAGAGGACGTGGCCAACATCGAGCCCACGATCCTGGGGCCTGACGACGCTGGTTTTGAAC
GGTCCACTGAGCCGGTCTCCGCGACTCAGCGTGGTGACAGAGCTAAGCCTGAGCTTGGCTCTGGT
TTGTCTGAGCCAACCGCAGTGGTCTCCGACAAGTGGATCGACGAG
Found at i:65217 original size:18 final size:18
Alignment explanation
Indices: 65191--65258 Score: 109
Period size: 18 Copynumber: 3.8 Consensus size: 18
65181 TGGTGAAGCG
65191 GGTGAGGCTAGAGACGCT
1 GGTGAGGCTAGAGACGCT
* *
65209 GGTGTGGCTAAAGACGCT
1 GGTGAGGCTAGAGACGCT
*
65227 GGTGTGGCTAGAGACGCT
1 GGTGAGGCTAGAGACGCT
65245 GGTGAGGCTAGAGA
1 GGTGAGGCTAGAGA
65259 ATCTGATTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.22, C:0.15, G:0.44, T:0.19
Consensus pattern (18 bp):
GGTGAGGCTAGAGACGCT
Left flanking sequence: Indices 64691 -- 65190
CGTTGTTCGGTGCTGCTCTTGCCGGAGCTGCCCACCGCTTCGACCACCTGGGCCTCGACACCGTA
GACCTGAGCGACATTGCGTTGGACGAGTTTGCTCGCGACCAGCGCATCGAGGTGCCCACGCTCGC
GGACATCGACGCCCAGCCCGACACCGTCAGCAACACCACGCTGATGAACGACTTGAGCGCGGTGG
CTCGGACCCAGTTGCCTCGCGAGGACTCGTTCAAGACGGCGGAGAACGACAACATCAGCGAGCGT
GCCCTGCTGGTGTCGTTGTACGACTCCGACATTGTCCCGCCTGTGTTTAACCGGGCGGACACCCT
GAACTCGTCGCGTTTGGACGGGTACAACACCCGGCCCAGCGACTACGACTTTGGCTCGCGGGGCG
ATCTTCTCGGAGGGTCGATTCCCGAGCACGAGGATTCCAGGCCCGTTGAGGGCCTGGCTGGTGGG
TTAGACCAACAGGTTAGAAGCCCGGGTGCGGAACTTGGTGAAGCG
Right flanking sequence: Indices 65259 -- 65758
ATCTGATTTCGAGCCGGTGACTGGCAACGCTGAAGAGTCGTTTGGCAACGCTGAAAAGTCGTTTG
GCGCCGCTCCCGCCGGCCTCACCACCGAGCCCATCACCCTCGGGTCCACCCCCGGGTTGGACCCC
GTCGAGCAGCCTGCGCCTCCCCAGGGCTCCGCCTCGGTGGGCGAGGCTCGCGAGGTGCCCAACCG
GGCCAATGCTGAGCGCGAGGGAGCGGTGCTCTCGGTGGTGGAGGAGTACCTGAAGCACCCGGTGC
TGCCCCAGCGCCAGGGCCACGGGTTGGTGGGCATGGACACCGACGAGGCCACCACCCACGTGGAC
GAGGTGGGCGACGTGGTGGTTGCTGCTGACCCCACGGGCGGACCCATGGACGCGCCCAGTGGCGA
GGATGTGCGGGCCAGTGGAAGCTCTGGCGTTGGTGCGAGCACCGCTGGTACTGGCGGAGCCTCGG
GCTCTCGCTACGGCCACCAACCCAAGCCGCTGGCCACCTCGTTCT
Found at i:65331 original size:21 final size:21
Alignment explanation
Indices: 65280--65325 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
65270 AGCCGGTGAC
*
65280 TGGCAACGCTGAAGAGTCGTT
1 TGGCAACGCTGAAAAGTCGTT
65301 TGGCAACGCTGAAAAGTCGTT
1 TGGCAACGCTGAAAAGTCGTT
65322 TGGC
1 TGGC
65326 GCCGCTCCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (21 bp):
TGGCAACGCTGAAAAGTCGTT
Left flanking sequence: Indices 64780 -- 65279
GAGTTTGCTCGCGACCAGCGCATCGAGGTGCCCACGCTCGCGGACATCGACGCCCAGCCCGACAC
CGTCAGCAACACCACGCTGATGAACGACTTGAGCGCGGTGGCTCGGACCCAGTTGCCTCGCGAGG
ACTCGTTCAAGACGGCGGAGAACGACAACATCAGCGAGCGTGCCCTGCTGGTGTCGTTGTACGAC
TCCGACATTGTCCCGCCTGTGTTTAACCGGGCGGACACCCTGAACTCGTCGCGTTTGGACGGGTA
CAACACCCGGCCCAGCGACTACGACTTTGGCTCGCGGGGCGATCTTCTCGGAGGGTCGATTCCCG
AGCACGAGGATTCCAGGCCCGTTGAGGGCCTGGCTGGTGGGTTAGACCAACAGGTTAGAAGCCCG
GGTGCGGAACTTGGTGAAGCGGGTGAGGCTAGAGACGCTGGTGTGGCTAAAGACGCTGGTGTGGC
TAGAGACGCTGGTGAGGCTAGAGAATCTGATTTCGAGCCGGTGAC
Right flanking sequence: Indices 65326 -- 65825
GCCGCTCCCGCCGGCCTCACCACCGAGCCCATCACCCTCGGGTCCACCCCCGGGTTGGACCCCGT
CGAGCAGCCTGCGCCTCCCCAGGGCTCCGCCTCGGTGGGCGAGGCTCGCGAGGTGCCCAACCGGG
CCAATGCTGAGCGCGAGGGAGCGGTGCTCTCGGTGGTGGAGGAGTACCTGAAGCACCCGGTGCTG
CCCCAGCGCCAGGGCCACGGGTTGGTGGGCATGGACACCGACGAGGCCACCACCCACGTGGACGA
GGTGGGCGACGTGGTGGTTGCTGCTGACCCCACGGGCGGACCCATGGACGCGCCCAGTGGCGAGG
ATGTGCGGGCCAGTGGAAGCTCTGGCGTTGGTGCGAGCACCGCTGGTACTGGCGGAGCCTCGGGC
TCTCGCTACGGCCACCAACCCAAGCCGCTGGCCACCTCGTTCTACAGCGACAACGACCACCAGGG
CGAGCGCGACCCCGCGTTGGCCCTGGGCTTCAACCGCTACCTGGT
Found at i:65990 original size:18 final size:18
Alignment explanation
Indices: 65967--66007 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
65957 CGCCGCGGGC
*
65967 GCTGGGTGTCTCGGGCCA
1 GCTGGGGGTCTCGGGCCA
65985 GCTGGGGGTCTCGGGCCA
1 GCTGGGGGTCTCGGGCCA
66003 GCTGG
1 GCTGG
66008 CCACCCCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.27, G:0.49, T:0.20
Consensus pattern (18 bp):
GCTGGGGGTCTCGGGCCA
Left flanking sequence: Indices 65467 -- 65966
CGCGAGGGAGCGGTGCTCTCGGTGGTGGAGGAGTACCTGAAGCACCCGGTGCTGCCCCAGCGCCA
GGGCCACGGGTTGGTGGGCATGGACACCGACGAGGCCACCACCCACGTGGACGAGGTGGGCGACG
TGGTGGTTGCTGCTGACCCCACGGGCGGACCCATGGACGCGCCCAGTGGCGAGGATGTGCGGGCC
AGTGGAAGCTCTGGCGTTGGTGCGAGCACCGCTGGTACTGGCGGAGCCTCGGGCTCTCGCTACGG
CCACCAACCCAAGCCGCTGGCCACCTCGTTCTACAGCGACAACGACCACCAGGGCGAGCGCGACC
CCGCGTTGGCCCTGGGCTTCAACCGCTACCTGGTCCACCTGGACGACTTGCGCGAGCAGATCGAC
ACCGTGGACGAGCAGTTGGCCGAGCCGGTGACGCCCAAGACCGCCCAGAAGGGCGTGGAGTCCGA
GGACACCACCCCGATTGTCACCTCGATTGACAAGTCGCCGCGGGC
Right flanking sequence: Indices 66008 -- 66507
CCACCCCCACCAAGGCCCCCGCGCTGCCTCGTCGCAGCTCGCTGGGCTCCCGCAGGCTGTCGCAG
CCGTTTGCCTTCTTGGCCAACTTTGGCAAGAAGGACCGCAAGGACCCCAAGGAGGCGGAGAAGAT
CCGCAAGGCGTCTGCCCGCGACCCCCCGGCCCCTGTGCCGGTCCCGAGCGACTCGGGTGCCCAGC
CCACGTCGTCGGTGGGCACACCCGCTGTCTCGAAGGCCACGGGCAACCACCCGGTGGTGACCGAT
CTCTCGGAGGACAACCTCCAGGCGACCCCCCAGACGCCTCAGGTGGGCTCGCTGCCGCACACGGG
CCACCCCGTGACCCCGAGCAAGATCCAGGGCCTGTCGTTCTTTGCCACGCCCCCCGGCAACTACG
AGCACGACCCGTTGGCCAAGCCTGCGTTCCCGCACTCCGAGTCTCCTGAGTACTCGGACGGGTCC
GCCGGGCCGCCCACCAAGCTGACGGTGGCCACCAACCCGAACGAG
Found at i:67024 original size:14 final size:14
Alignment explanation
Indices: 67005--67041 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
66995 GAGCGAGTGA
67005 GCATTGGAGTGTGG
1 GCATTGGAGTGTGG
67019 GCATTGGAGTGTGG
1 GCATTGGAGTGTGG
67033 GCATTGGAG
1 GCATTGGAG
67042 CGTCATTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.16, C:0.08, G:0.49, T:0.27
Consensus pattern (14 bp):
GCATTGGAGTGTGG
Left flanking sequence: Indices 66505 -- 67004
GAGGTGGCTCCCGAAGCCCACCCGGTGGCTGTGGGCCACCCTGAGGGTGCCCTGGCCGCACGCAC
CCACTCGCGGGCCACTGATGCCTCGGATGGCACCAAGTCGAAGAAAAAGCCGGGCAAGTTCAAAA
AGGCCATCTACAAGTACTTCGTCACCCCTGGCTACCAGGACTAATTAATGTTTGCTTTGTATGTT
AATGTATTATGATTAAGAATGAAATAGGCTGAAATTGTGTTTGTGGGTGGAACGGGCAGTGGCAG
GCGAGGGTCTAGACTCGGAAATGCGTACCGAAGCACGGCCGCGATCGGAAACGTCCCCGGGGGCC
CGGAATTGTGGTGGATTAGCCTGAAACCAGGCGAGCCTGTGCTTGTCTGCGGGCTGGGATCAGGG
GTAGTGTGTATGCGTGGTCCAGTTTGGGTCTGGGCCAGGGGTTCTTCTGTGCTTCAGCCGCGGGG
TGATCGCGGGGTTGATCGGTACGGGATAATAACCGGAGCGAGTGA
Right flanking sequence: Indices 67042 -- 67541
CGTCATTTGGTTCTGGGCCGAATCTGTATTGGCACATCTACTACCAGGCTTCTGGACCTGTTCCT
GATCATTTGTGGATTGCTAAATATATTAATGTCCTAGCCCTTCCAGGTGTGGGTATCACGCTTGA
AACGGTTCAAACGCTCCTCAGGTTGGCGTTTCCACGTCTTCCAGAAACGCAGCATCGTGGCAGCA
AAACTCATGGTGTGGGTGCTTGTGGTGGTGGTATTAAATACTGGCCGGATATATCGATAGGTGAC
CGGGTGGATGGATCGGTTTTTTCTTGGAATGGTATCACTTGGCAACCGGTGACGGTGAGTGGAGC
CAACAGGAAGATCCCGGGTTATATATCGCAGCCGCTACGGCTTGGCTTCCGCGGTGACTCAAACG
CTGGTTTGTGCCAGCAACCTATCTGCTTTGATATACAGTCCTTATCTACAGATAGTGCAGCGAAC
AAGACAGATAGGCACTTGGCAGGAAGTCTAGTGCAAATACACCAC
Found at i:68824 original size:14 final size:14
Alignment explanation
Indices: 68805--68848 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
68795 TGGGCAGAGA
68805 GAAGGAAGGAGAAG
1 GAAGGAAGGAGAAG
68819 GAAGGAAGGAGAAG
1 GAAGGAAGGAGAAG
*
68833 GAAGGGA-GAGAAG
1 GAAGGAAGGAGAAG
68846 GAA
1 GAA
68849 TGGGAGAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
13 9 0.31
14 20 0.69
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (14 bp):
GAAGGAAGGAGAAG
Left flanking sequence: Indices 68305 -- 68804
TCGTTGGCGTCAAGGGCCTCGATGAACTCCTTGTACACCTTCTGGTACAAAACGTCGAGGTTCTT
GTCCAGCACCTCCCCCACCACGGCCTTGATGATGTCACGGCCAAAGTGCTTGTACACCAAGCCCG
CCAGCGAGAGCTTGGTGGCGTAGTCCGCGGAGAAAGTGGAGTCGAACTCACGCTGGTGGTGGTCA
AAGAACTTGACGCCGTCGTACTTGCCCAGCACGTCCACCACGATGTCGGCCCGCTCCCAGTCCTC
GGGGGCGCGCGACCGGACCAACTCAGCGTCCTTGAACTGAGGGAGCAAACGCAACATGTAGACGG
CCAACAGCTCGTCTGCGTGGAACAGACCCAGGTGGGTGCAGATGATTTTCGCCATTTTGGACCGC
TTTACTGACATCGATGGATTTGGGTGTGGTCTTCGCGGCTGTATGCCGGAGGTGATGAGAGGTGG
TGTAAAGGTAAGCAGGATGGAGGGGTGAACAGGGTTGGGCAGAGA
Right flanking sequence: Indices 68849 -- 69348
TGGGAGAGATGAAATGGGGAGGGAAATGAGGGGCGGGTTTTGTGGAATGTGAGACTGCGATTAAT
GGAGAAGAATTGGAGGGTGGTGGAATGAAAATTGAACGGTAGTATGGGAGAGGGTGTGCTTAGAC
CAACGAAGAAAGTGAAATTGGACTTAGGGTAAATGGTTTTAATTGAGAGCTGATTCTAGACCCGG
TGGTGTGTGTCAATACCAAAGCATTGGCTCTGGTATCGTTGAATAGTGGGCAAATTTGTACGGTG
CTGGTTCAACTGCTTGTTCCCGACTGGTTCACAGCCTAACTCACTAGAGCTCTTTCAATACTAAC
AGCAATGACAGTATGAGGCAGTAACCCTTCGAGCCTGGTTCGTTTGGAGTGGTTCGAAGCCCAAT
CACAAAATTTCACTACTCCAGATTGTACATTTCCTCATTTTGAGCACAGGCCAGTAGAAGTGGGG
AATGGTAAGGATATCAGCAGGCTCTTCGTAATTGGCGGCTTGAAA
Found at i:68853 original size:14 final size:13
Alignment explanation
Indices: 68801--68857 Score: 66
Period size: 14 Copynumber: 4.5 Consensus size: 13
68791 GGGTTGGGCA
68801 GAGAGAAGGAA--
1 GAGAGAAGGAAGG
68812 G-GAGAAGGAAGG
1 GAGAGAAGGAAGG
*
68824 AAGGAGAAGGAAGG
1 GA-GAGAAGGAAGG
68838 GAGAGAAGGAATGG
1 GAGAGAAGGAA-GG
68852 GAGAGA
1 GAGAGA
68858 TGAAATGGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 9 0.23
11 1 0.03
13 9 0.23
14 20 0.51
ACGTcount: A:0.47, C:0.00, G:0.51, T:0.02
Consensus pattern (13 bp):
GAGAGAAGGAAGG
Left flanking sequence: Indices 68301 -- 68800
ATTGTCGTTGGCGTCAAGGGCCTCGATGAACTCCTTGTACACCTTCTGGTACAAAACGTCGAGGT
TCTTGTCCAGCACCTCCCCCACCACGGCCTTGATGATGTCACGGCCAAAGTGCTTGTACACCAAG
CCCGCCAGCGAGAGCTTGGTGGCGTAGTCCGCGGAGAAAGTGGAGTCGAACTCACGCTGGTGGTG
GTCAAAGAACTTGACGCCGTCGTACTTGCCCAGCACGTCCACCACGATGTCGGCCCGCTCCCAGT
CCTCGGGGGCGCGCGACCGGACCAACTCAGCGTCCTTGAACTGAGGGAGCAAACGCAACATGTAG
ACGGCCAACAGCTCGTCTGCGTGGAACAGACCCAGGTGGGTGCAGATGATTTTCGCCATTTTGGA
CCGCTTTACTGACATCGATGGATTTGGGTGTGGTCTTCGCGGCTGTATGCCGGAGGTGATGAGAG
GTGGTGTAAAGGTAAGCAGGATGGAGGGGTGAACAGGGTTGGGCA
Right flanking sequence: Indices 68858 -- 69357
TGAAATGGGGAGGGAAATGAGGGGCGGGTTTTGTGGAATGTGAGACTGCGATTAATGGAGAAGAA
TTGGAGGGTGGTGGAATGAAAATTGAACGGTAGTATGGGAGAGGGTGTGCTTAGACCAACGAAGA
AAGTGAAATTGGACTTAGGGTAAATGGTTTTAATTGAGAGCTGATTCTAGACCCGGTGGTGTGTG
TCAATACCAAAGCATTGGCTCTGGTATCGTTGAATAGTGGGCAAATTTGTACGGTGCTGGTTCAA
CTGCTTGTTCCCGACTGGTTCACAGCCTAACTCACTAGAGCTCTTTCAATACTAACAGCAATGAC
AGTATGAGGCAGTAACCCTTCGAGCCTGGTTCGTTTGGAGTGGTTCGAAGCCCAATCACAAAATT
TCACTACTCCAGATTGTACATTTCCTCATTTTGAGCACAGGCCAGTAGAAGTGGGGAATGGTAAG
GATATCAGCAGGCTCTTCGTAATTGGCGGCTTGAAATGCCAGGGA
Found at i:69514 original size:14 final size:14
Alignment explanation
Indices: 69495--69524 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69485 GTTTGGGCAA
*
69495 CCATCTCTCCCTTC
1 CCATCTCACCCTTC
69509 CCATCTCACCCTTC
1 CCATCTCACCCTTC
69523 CC
1 CC
69525 CACCCTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.60, G:0.00, T:0.30
Consensus pattern (14 bp):
CCATCTCACCCTTC
Left flanking sequence: Indices 68995 -- 69494
ATTGGACTTAGGGTAAATGGTTTTAATTGAGAGCTGATTCTAGACCCGGTGGTGTGTGTCAATAC
CAAAGCATTGGCTCTGGTATCGTTGAATAGTGGGCAAATTTGTACGGTGCTGGTTCAACTGCTTG
TTCCCGACTGGTTCACAGCCTAACTCACTAGAGCTCTTTCAATACTAACAGCAATGACAGTATGA
GGCAGTAACCCTTCGAGCCTGGTTCGTTTGGAGTGGTTCGAAGCCCAATCACAAAATTTCACTAC
TCCAGATTGTACATTTCCTCATTTTGAGCACAGGCCAGTAGAAGTGGGGAATGGTAAGGATATCA
GCAGGCTCTTCGTAATTGGCGGCTTGAAATGCCAGGGATTGTAATCAAACTAAGCCCTGGGGAAT
TATCACTCAGATTGAATGCTTAGCTTCGCTGCATGCAAGCAATTACCTCAGGTCAGAGCCCAAAA
GCCCCAGCCGTCCCCGTGGTTCAACCCGACTGTTCGTTTGGGCAA
Right flanking sequence: Indices 69525 -- 70024
CACCCTTACTCGTCCAACTGCCTCCAACAGTTGCGTGCCAAAACCCACGCGTCCACGGGTGACCC
CTGCACCCTGCAAACGTGCTTCTGACGTCACAGCCGTCCCGGACCCTTCGTAAACGGCCCCCCTT
CGCCAGTACCAGCCCTCCCGGATTAACCTGTGAGCCGTGCCTACGATTGCTGGCTGGTTATGAGT
GATGCCCGTCGCGTCCACCAACCCCAGTCACCTCCGAGGTTCGGGGCTAACAGGTGACAAAACCG
CTTCGAACGGCCATCGGCAGCGGCGGAAGCGCGATCGTCGCCGCCTCGCTTGCCCACCCAACCGA
GGCGGACGTGCACGTACCCAAACTCGAGCACATTATAACTTCACTTGGCATACGAACCTCGTACC
AGCGGTAGCAAACCATCGCACACCTCTGCCACGACGTGAGTGTGGCCAAACACTTGGCATCAATG
ACCTTGCGAACGCCAGCACCGACTGGTGCCGTCTTGAATTTACAT
Found at i:90154 original size:12 final size:12
Alignment explanation
Indices: 90137--90169 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
90127 AGTAGGGGAA
90137 AGGAAAAGGGCG
1 AGGAAAAGGGCG
90149 AGGAAAAGGGCG
1 AGGAAAAGGGCG
*
90161 AGGAGAAGG
1 AGGAAAAGG
90170 AAGAAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.06, G:0.52, T:0.00
Consensus pattern (12 bp):
AGGAAAAGGGCG
Left flanking sequence: Indices 89637 -- 90136
CTCCAGGTGATGATTGACGAGACTCGGGCGCTCCTGACAGAGATCTACGATCTTTTCCAAAAGTT
GGGGCCCCAGAACTTCAAGATTGAGAAACAGTTGGTGGACGACTTGAAAGGGGTGTGTTTGCTCT
CGCTGAAGACCAATAACCTCTCTGTGCCAGATGTGCGGGACCCCAAGGGGGCCAAAATCACTTAT
AGAATGCTCAACAAGCAGGAGTGGGTGCAGCAGTCGAACGGGACTTACCAAAAGACGTTTGATTT
TGCGCTCGACATGGACACCATGCAGCTCAAGGGGTACGACCCGTCGCTTGAGCGGGCGTGCGACC
GGTTCACGTTGGTGCCGTCGTTCCAGCTGTGCTTTTTGGGGCGGATGTACTACCTCCGGATGAGT
TTTGGTCTTCTGAACGGGGAGTTTATCCACTTGAAGGTGCCTGTAAACGTGTCGAAGTTGTGGGC
GGAGAATTTCTGCCACTGTCCCCAGTATCTTGGCCAGTAGGGGAA
Right flanking sequence: Indices 90170 -- 90669
AAGAAGGGAAGGAAGAGGGAAAGGAAGAGAGGAAGACAAGCAATAGACCATGTAATAGACGAAAT
AACAAAGTATTGAAGCAGAACATGCAACAACTGTTTTGTCATCACGATTTTGCAGCCATTTGCAG
CCGTGGTGAGTGAGAGACTGGTGAAGGTGAGTGCTGAAAGCGTTGAGTATGGATCTCATGCGACA
GTGACTCTATTATTTTTCATTGCTTTGTCTTGCCTAGTGGTTCCTTCGTCGCTGGCTTTAGCGTT
CGTCAATGACTCACCCGTGGTGCTCGGAGGTATCGCGGAGATAGTCCGGGTCCGAGATTGGCAAG
GAAGCGAAGGTACTACACAAAGGTACACAAAGTTGCGCGGATAGGCTCTGAGTGAAGCACCAGTG
AAGCACCATCCACAGGACTGGCCCCTACTTCACTTCTTGTAGACTCTTCTTGTAGACTTCTACAA
TAGCTACCAGAGTCAAAGCCAATCACACCTACGTGACAAATTCCC
Found at i:90198 original size:12 final size:12
Alignment explanation
Indices: 90166--90203 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
90156 GGGCGAGGAG
90166 AAGGAAGAAGGG-
1 AAGGAAG-AGGGA
90178 AAGGAAGAGGGA
1 AAGGAAGAGGGA
90190 AAGGAAGAGAGGA
1 AAGGAAGAG-GGA
90203 A
1 A
90204 GACAAGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (12 bp):
AAGGAAGAGGGA
Left flanking sequence: Indices 89666 -- 90165
GCTCCTGACAGAGATCTACGATCTTTTCCAAAAGTTGGGGCCCCAGAACTTCAAGATTGAGAAAC
AGTTGGTGGACGACTTGAAAGGGGTGTGTTTGCTCTCGCTGAAGACCAATAACCTCTCTGTGCCA
GATGTGCGGGACCCCAAGGGGGCCAAAATCACTTATAGAATGCTCAACAAGCAGGAGTGGGTGCA
GCAGTCGAACGGGACTTACCAAAAGACGTTTGATTTTGCGCTCGACATGGACACCATGCAGCTCA
AGGGGTACGACCCGTCGCTTGAGCGGGCGTGCGACCGGTTCACGTTGGTGCCGTCGTTCCAGCTG
TGCTTTTTGGGGCGGATGTACTACCTCCGGATGAGTTTTGGTCTTCTGAACGGGGAGTTTATCCA
CTTGAAGGTGCCTGTAAACGTGTCGAAGTTGTGGGCGGAGAATTTCTGCCACTGTCCCCAGTATC
TTGGCCAGTAGGGGAAAGGAAAAGGGCGAGGAAAAGGGCGAGGAG
Right flanking sequence: Indices 90204 -- 90703
GACAAGCAATAGACCATGTAATAGACGAAATAACAAAGTATTGAAGCAGAACATGCAACAACTGT
TTTGTCATCACGATTTTGCAGCCATTTGCAGCCGTGGTGAGTGAGAGACTGGTGAAGGTGAGTGC
TGAAAGCGTTGAGTATGGATCTCATGCGACAGTGACTCTATTATTTTTCATTGCTTTGTCTTGCC
TAGTGGTTCCTTCGTCGCTGGCTTTAGCGTTCGTCAATGACTCACCCGTGGTGCTCGGAGGTATC
GCGGAGATAGTCCGGGTCCGAGATTGGCAAGGAAGCGAAGGTACTACACAAAGGTACACAAAGTT
GCGCGGATAGGCTCTGAGTGAAGCACCAGTGAAGCACCATCCACAGGACTGGCCCCTACTTCACT
TCTTGTAGACTCTTCTTGTAGACTTCTACAATAGCTACCAGAGTCAAAGCCAATCACACCTACGT
GACAAATTCCCACCACCCACTAACCAACGCAAACACAAACAAGAA
Found at i:90610 original size:13 final size:13
Alignment explanation
Indices: 90592--90617 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90582 CCCTACTTCA
90592 CTTCTTGTAGACT
1 CTTCTTGTAGACT
90605 CTTCTTGTAGACT
1 CTTCTTGTAGACT
90618 TCTACAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
CTTCTTGTAGACT
Left flanking sequence: Indices 90092 -- 90591
GGAGAATTTCTGCCACTGTCCCCAGTATCTTGGCCAGTAGGGGAAAGGAAAAGGGCGAGGAAAAG
GGCGAGGAGAAGGAAGAAGGGAAGGAAGAGGGAAAGGAAGAGAGGAAGACAAGCAATAGACCATG
TAATAGACGAAATAACAAAGTATTGAAGCAGAACATGCAACAACTGTTTTGTCATCACGATTTTG
CAGCCATTTGCAGCCGTGGTGAGTGAGAGACTGGTGAAGGTGAGTGCTGAAAGCGTTGAGTATGG
ATCTCATGCGACAGTGACTCTATTATTTTTCATTGCTTTGTCTTGCCTAGTGGTTCCTTCGTCGC
TGGCTTTAGCGTTCGTCAATGACTCACCCGTGGTGCTCGGAGGTATCGCGGAGATAGTCCGGGTC
CGAGATTGGCAAGGAAGCGAAGGTACTACACAAAGGTACACAAAGTTGCGCGGATAGGCTCTGAG
TGAAGCACCAGTGAAGCACCATCCACAGGACTGGCCCCTACTTCA
Right flanking sequence: Indices 90618 -- 91117
TCTACAATAGCTACCAGAGTCAAAGCCAATCACACCTACGTGACAAATTCCCACCACCCACTAAC
CAACGCAAACACAAACAAGAAACAAACTACACTAAACCTCTCTCACAGTCACTCTACACCCTCTA
CATCCCTCTACCCGTCCCACTTCCCCCACCTGGCTTCTGCCGCGCCTGCATGGGTGTCACCGGCG
CGGACCGAGTGAAAAAAGTACCATAGGCTCCAGTCAGCTACCTTATCAACGGATGTTAGCAAGAC
TAGTGGGGAAGAGCGCGGCACGCGCAGCGGTCCGGATGCCCCCGCGGTTGGTGGCTCCGTTGGCC
GCGCGCCCACTTGCCCAGCGGTTCCACGGCCATTTGCACAAACCCAACCCGGGCGAGGAATTGCA
CATCACCTTCATCACCAAGGAGGGCGACCAGTTCACGTACGAGGTGGCTGAGGGCGACAACGTGT
TGGACATTGCCCAGGCGCACGGGCTCGACATGGAGGGTGCGTGTG
Found at i:91407 original size:13 final size:13
Alignment explanation
Indices: 91389--91426 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
91379 GTGGGGTAGG
91389 GTGGTGTGTGGTT
1 GTGGTGTGTGGTT
91402 GTGGTGTGTGG-T
1 GTGGTGTGTGGTT
91414 GAT-GTGTGTGGTT
1 G-TGGTGTGTGGTT
91427 TGAGTGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.03, C:0.00, G:0.53, T:0.45
Consensus pattern (13 bp):
GTGGTGTGTGGTT
Left flanking sequence: Indices 90889 -- 91388
AGCGCGGCACGCGCAGCGGTCCGGATGCCCCCGCGGTTGGTGGCTCCGTTGGCCGCGCGCCCACT
TGCCCAGCGGTTCCACGGCCATTTGCACAAACCCAACCCGGGCGAGGAATTGCACATCACCTTCA
TCACCAAGGAGGGCGACCAGTTCACGTACGAGGTGGCTGAGGGCGACAACGTGTTGGACATTGCC
CAGGCGCACGGGCTCGACATGGAGGGTGCGTGTGGAGGGCTGTGTGCGTGTCTGACGTGCCATGT
CATCGTCGACCCCGAGTTCTACGACGAGATCCCCGAGCCCGACGATGACGAGAACGACATGTTGG
ACTTGGCGTTTGGGTTGACGGAGACGTCGCGGTTGGGGTGCCAGATCAAAATGACCAAGGAGTTG
GACGGGTTGCGGGTGGCGTTGCCGGCGATGACGAGAAACTTGCAAGCCAAGGATTTTAACTGATG
TACATAGGCGAATACAGATAATAGTGAAGTGGTGTGTGGGGTAGG
Right flanking sequence: Indices 91427 -- 91926
TGAGTGGTTTGTGTACGTGCTGTGCGTTGTGGGGTGTTATGTGGGGGAGTGGTGTGATGTGGTGG
TGTGCTTAGTAATATGCCAGTGAATGTGTCAACGGACGACAGGAGGCGCGACGGGTGTAGGTTGA
GCTTGAGTGGTTTGGTACCAGTCTACCAATATGATCCGGTTTATACTTCTTTCTCCTCTCCTGAT
CGTCCTGGCCGTTTGCTTTTTCCCCTTACACACCGCTCATCGCTTTGTGGCACCGGTTGGCGTAT
CACAGGTACGCGAAATGTAAGCGACGTGGGGAGATCGGACGATCGCCCAAACGTTCTATTTTCTG
GTATTTTTGGCACAGGGTATGTGGTGTAAGGAACGGGGTACATATGGCGCCATGTCGGGTTAGGT
GGGTAGGTTGGTGGGTAGGATACTAGTGGGTGGTGAAATATTTACGCGGTCTTAGAACCTGGTGG
GAAAATAGTTGGTGGAGACCAGGAGAGGAAATCCACCCCTAGTGC
Found at i:92193 original size:23 final size:23
Alignment explanation
Indices: 92167--92210 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
92157 TCCATAGTTA
92167 TCACCCTAAAACCACCATCTCCC
1 TCACCCTAAAACCACCATCTCCC
*
92190 TCACCCTAAAATCACCATCTC
1 TCACCCTAAAACCACCATCTC
92211 TCGCACATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (23 bp):
TCACCCTAAAACCACCATCTCCC
Left flanking sequence: Indices 91667 -- 92166
TGTGGCACCGGTTGGCGTATCACAGGTACGCGAAATGTAAGCGACGTGGGGAGATCGGACGATCG
CCCAAACGTTCTATTTTCTGGTATTTTTGGCACAGGGTATGTGGTGTAAGGAACGGGGTACATAT
GGCGCCATGTCGGGTTAGGTGGGTAGGTTGGTGGGTAGGATACTAGTGGGTGGTGAAATATTTAC
GCGGTCTTAGAACCTGGTGGGAAAATAGTTGGTGGAGACCAGGAGAGGAAATCCACCCCTAGTGC
CCTGTAACCACCCAGGTTTCCCGCGTCTGTGTTTGATGTCCGTAATTACCTCCACACCGTTATGC
TGTCAACATGTCCCTTGTAAAAGCGACACACATAATAATAAGCCAATCGAGGTACGTCAACAGTT
GATGTGCCAAAACCACCAATTCACAAATCCATGTTGATTTACAGCATCCCATGAATCCATAATCT
CTAATGACACACCAACAACCACACCCTACAAATAATCCATAGTTA
Right flanking sequence: Indices 92211 -- 92710
TCGCACATTACAATCCCCATATCTCCTCAAAATCCACTGACCACCACCCGCAACCACCCAACCCA
CTACACATCTCCTTACCATTATGTATTAACTAAGCCTTTCTCACCCCGGACACAATGTCGTCCAC
CCGCAATAACAACGACGCCAGGTCGATCGCCGTCTTGATCGACTGCTGCTTGATCACCTCGGGCT
CCCAGATCCCGTACTCGCGCATGTCCACCACCTTGCCGTGGTCGCCATCGATACCCCAGGTGTGC
TCGCCGTGCGCGTGCTTGGCTCGGAGCTGCGACAACACCCGGATCGGGTTGCCTCCGCAGTTCTG
GATGAGGGTGCGGGGAATCACCTCGAACGCATCCGCCACCGCCTGGTACGGCCACTGGGCCACCC
CTTCGATCAGCTTGGCCTTCTCGGCCAACCGCACCGACACCGCCATCTCGGTGGCGCCTCCACCG
GGCGCCAACGACGGCTCAAACATCACGTTGCGGCACACGGCCATG
Found at i:94048 original size:2 final size:2
Alignment explanation
Indices: 94043--94103 Score: 71
Period size: 2 Copynumber: 33.5 Consensus size: 2
94033 TTGTGTGTAC
*
94043 TG TG TG T- TT TG TG TG TG TG T- TG TG TG T- TG TG TG TG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
94081 TG TG TG T- TG TG TG T- TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
94104 TATGTGTATT
Statistics
Matches: 52, Mismatches: 1, Indels: 12
0.80 0.02 0.18
Matches are distributed among these distances:
1 6 0.12
2 46 0.88
ACGTcount: A:0.00, C:0.00, G:0.43, T:0.57
Consensus pattern (2 bp):
TG
Left flanking sequence: Indices 93543 -- 94042
TGTTCTTTTCGATGTAGGGAAACGTCTGGGCGAGGATTTCGCCGGCCAAGATGATCACGGTGGTG
GTGCCGTCGCCCACCTCCTCGTCCTGGGTGCGCAGGAGCTCAATCATCAGCTTGGCTGCCGGGTG
CAGCACGTCGATCTCGCGGAGAATGGCGTGGCCGTCGTTGGTGAGCACGATCCCGCCCATGGGGT
CCAAAAGCATCTTGAGCATGGCCTTGGGGCCCAAACAGGTGCGGATGATGTCAGCCACCGCCTTG
GCGGCGGTGATGTTGGCCACCTGCGCCTGCCGGCCGCTCTGCCGCTCGGTGTTGGCGTTCAAATA
CACCACGGGAGCTTGCATTGGATGGGTGTGGTCGCCACGGGTGGTGGAATTTTTCAACGCGCGGG
CGCTACCATGGGAAGAGAGGAGGTGGGTGAGGGGATGGAGGTGGGTTGTAGGGGTTAGGCAATGT
ATTGTAGTGCAATTGTGGTGGATGGTTCCCTTTTGTTGTGTGTAC
Right flanking sequence: Indices 94104 -- 94603
TATGTGTATTGTTAGATAGGTGGTATGATCGAGTGGTTACCGTCGCGACTCGAGAATGGTAGTGA
ACGCGTATGTAATTAGATATTATAGGTGACTGGATTAATTATAGACTATAGGTGGCTGGGCACGA
GACACAATTGCCATTGGCTGTGACTTATGCCATTGTTGAGTCTGAAAACCGAATCAATTGTCAGT
TGTCTACTCACTGTCTTCCGCCTATTCACTGTCCTCTGTAAAACAGTCAAAGTCGATCAGCACCA
TACACCCGGCCACGATCGCCCGCTGCACCATCGGAAGCCGCTGGAAGTCGACATCGTACTCGTTA
GCGTAGGAAAACGTCTCCTTTTTGAGCCCCAACCACCGCCGCCGGATCTGGGCCACCTCTTCCCC
GTCCTCGTTGTTGATGAAAAACGTAAACCCAAGCGGCTTGGCGCTGACAAACCCAAACTCCACGG
GGCGGTACGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAACA
Found at i:94055 original size:9 final size:9
Alignment explanation
Indices: 94033--94110 Score: 70
Period size: 9 Copynumber: 8.7 Consensus size: 9
94023 TTCCCTTTTG
*
94033 TTGTGTGTA
1 TTGTGTGTT
*
94042 CTGTGTGTT
1 TTGTGTGTT
94051 TTGTGTGTGT
1 TTGTGTGT-T
94061 GTTGTGTG--
1 -TTGTGTGTT
*
94069 TTGTGTGTG
1 TTGTGTGTT
*
94078 TTGTGTGTG
1 TTGTGTGTT
94087 TTGTGTGTT
1 TTGTGTGTT
*
94096 GTGTGTGTT
1 TTGTGTGTT
*
94105 ATGTGT
1 TTGTGT
94111 ATTGTTAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
7 7 0.12
9 44 0.75
10 1 0.02
11 7 0.12
ACGTcount: A:0.03, C:0.01, G:0.40, T:0.56
Consensus pattern (9 bp):
TTGTGTGTT
Left flanking sequence: Indices 93533 -- 94032
ACCGGGTGGATGTTCTTTTCGATGTAGGGAAACGTCTGGGCGAGGATTTCGCCGGCCAAGATGAT
CACGGTGGTGGTGCCGTCGCCCACCTCCTCGTCCTGGGTGCGCAGGAGCTCAATCATCAGCTTGG
CTGCCGGGTGCAGCACGTCGATCTCGCGGAGAATGGCGTGGCCGTCGTTGGTGAGCACGATCCCG
CCCATGGGGTCCAAAAGCATCTTGAGCATGGCCTTGGGGCCCAAACAGGTGCGGATGATGTCAGC
CACCGCCTTGGCGGCGGTGATGTTGGCCACCTGCGCCTGCCGGCCGCTCTGCCGCTCGGTGTTGG
CGTTCAAATACACCACGGGAGCTTGCATTGGATGGGTGTGGTCGCCACGGGTGGTGGAATTTTTC
AACGCGCGGGCGCTACCATGGGAAGAGAGGAGGTGGGTGAGGGGATGGAGGTGGGTTGTAGGGGT
TAGGCAATGTATTGTAGTGCAATTGTGGTGGATGGTTCCCTTTTG
Right flanking sequence: Indices 94111 -- 94610
ATTGTTAGATAGGTGGTATGATCGAGTGGTTACCGTCGCGACTCGAGAATGGTAGTGAACGCGTA
TGTAATTAGATATTATAGGTGACTGGATTAATTATAGACTATAGGTGGCTGGGCACGAGACACAA
TTGCCATTGGCTGTGACTTATGCCATTGTTGAGTCTGAAAACCGAATCAATTGTCAGTTGTCTAC
TCACTGTCTTCCGCCTATTCACTGTCCTCTGTAAAACAGTCAAAGTCGATCAGCACCATACACCC
GGCCACGATCGCCCGCTGCACCATCGGAAGCCGCTGGAAGTCGACATCGTACTCGTTAGCGTAGG
AAAACGTCTCCTTTTTGAGCCCCAACCACCGCCGCCGGATCTGGGCCACCTCTTCCCCGTCCTCG
TTGTTGATGAAAAACGTAAACCCAAGCGGCTTGGCGCTGACAAACCCAAACTCCACGGGGCGGTA
CGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAACATGTGGTA
Found at i:94056 original size:18 final size:17
Alignment explanation
Indices: 94031--94110 Score: 99
Period size: 18 Copynumber: 4.6 Consensus size: 17
94021 GGTTCCCTTT
*
94031 TGTTGTGTGTACTGTGTG
1 TGTTGTGTGT-GTGTGTG
*
94049 TTTTGTGTGTGTGTTGTG
1 TGTTGTGTGTGTG-TGTG
94067 TGTTGTGTGTGTTGTGTG
1 TGTTGTGTGTG-TGTGTG
94085 TGTTGTGTGT-TGTGTG
1 TGTTGTGTGTGTGTGTG
*
94101 TGTTATGTGT
1 TGTTGTGTGT
94111 ATTGTTAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
16 15 0.27
17 2 0.04
18 37 0.66
19 2 0.04
ACGTcount: A:0.03, C:0.01, G:0.40, T:0.56
Consensus pattern (17 bp):
TGTTGTGTGTGTGTGTG
Left flanking sequence: Indices 93531 -- 94030
TCACCGGGTGGATGTTCTTTTCGATGTAGGGAAACGTCTGGGCGAGGATTTCGCCGGCCAAGATG
ATCACGGTGGTGGTGCCGTCGCCCACCTCCTCGTCCTGGGTGCGCAGGAGCTCAATCATCAGCTT
GGCTGCCGGGTGCAGCACGTCGATCTCGCGGAGAATGGCGTGGCCGTCGTTGGTGAGCACGATCC
CGCCCATGGGGTCCAAAAGCATCTTGAGCATGGCCTTGGGGCCCAAACAGGTGCGGATGATGTCA
GCCACCGCCTTGGCGGCGGTGATGTTGGCCACCTGCGCCTGCCGGCCGCTCTGCCGCTCGGTGTT
GGCGTTCAAATACACCACGGGAGCTTGCATTGGATGGGTGTGGTCGCCACGGGTGGTGGAATTTT
TCAACGCGCGGGCGCTACCATGGGAAGAGAGGAGGTGGGTGAGGGGATGGAGGTGGGTTGTAGGG
GTTAGGCAATGTATTGTAGTGCAATTGTGGTGGATGGTTCCCTTT
Right flanking sequence: Indices 94111 -- 94610
ATTGTTAGATAGGTGGTATGATCGAGTGGTTACCGTCGCGACTCGAGAATGGTAGTGAACGCGTA
TGTAATTAGATATTATAGGTGACTGGATTAATTATAGACTATAGGTGGCTGGGCACGAGACACAA
TTGCCATTGGCTGTGACTTATGCCATTGTTGAGTCTGAAAACCGAATCAATTGTCAGTTGTCTAC
TCACTGTCTTCCGCCTATTCACTGTCCTCTGTAAAACAGTCAAAGTCGATCAGCACCATACACCC
GGCCACGATCGCCCGCTGCACCATCGGAAGCCGCTGGAAGTCGACATCGTACTCGTTAGCGTAGG
AAAACGTCTCCTTTTTGAGCCCCAACCACCGCCGCCGGATCTGGGCCACCTCTTCCCCGTCCTCG
TTGTTGATGAAAAACGTAAACCCAAGCGGCTTGGCGCTGACAAACCCAAACTCCACGGGGCGGTA
CGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAACATGTGGTA
Found at i:94100 original size:7 final size:7
Alignment explanation
Indices: 94031--94101 Score: 87
Period size: 7 Copynumber: 10.4 Consensus size: 7
94021 GGTTCCCTTT
94031 TGTTGTG
1 TGTTGTG
94038 TGTACTGTG
1 TGT--TGTG
*
94047 TGTTTTG
1 TGTTGTG
94054 TG-TGTG
1 TGTTGTG
94060 TGTTGTG
1 TGTTGTG
94067 TGTTGTG
1 TGTTGTG
94074 TG-TGT-
1 TGTTGTG
94079 TG-TGTG
1 TGTTGTG
94085 TGTTGTG
1 TGTTGTG
94092 TGTTGTG
1 TGTTGTG
94099 TGT
1 TGT
94102 GTTATGTGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
5 5 0.09
6 10 0.18
7 35 0.61
9 7 0.12
ACGTcount: A:0.01, C:0.01, G:0.41, T:0.56
Consensus pattern (7 bp):
TGTTGTG
Left flanking sequence: Indices 93531 -- 94030
TCACCGGGTGGATGTTCTTTTCGATGTAGGGAAACGTCTGGGCGAGGATTTCGCCGGCCAAGATG
ATCACGGTGGTGGTGCCGTCGCCCACCTCCTCGTCCTGGGTGCGCAGGAGCTCAATCATCAGCTT
GGCTGCCGGGTGCAGCACGTCGATCTCGCGGAGAATGGCGTGGCCGTCGTTGGTGAGCACGATCC
CGCCCATGGGGTCCAAAAGCATCTTGAGCATGGCCTTGGGGCCCAAACAGGTGCGGATGATGTCA
GCCACCGCCTTGGCGGCGGTGATGTTGGCCACCTGCGCCTGCCGGCCGCTCTGCCGCTCGGTGTT
GGCGTTCAAATACACCACGGGAGCTTGCATTGGATGGGTGTGGTCGCCACGGGTGGTGGAATTTT
TCAACGCGCGGGCGCTACCATGGGAAGAGAGGAGGTGGGTGAGGGGATGGAGGTGGGTTGTAGGG
GTTAGGCAATGTATTGTAGTGCAATTGTGGTGGATGGTTCCCTTT
Right flanking sequence: Indices 94102 -- 94601
GTTATGTGTATTGTTAGATAGGTGGTATGATCGAGTGGTTACCGTCGCGACTCGAGAATGGTAGT
GAACGCGTATGTAATTAGATATTATAGGTGACTGGATTAATTATAGACTATAGGTGGCTGGGCAC
GAGACACAATTGCCATTGGCTGTGACTTATGCCATTGTTGAGTCTGAAAACCGAATCAATTGTCA
GTTGTCTACTCACTGTCTTCCGCCTATTCACTGTCCTCTGTAAAACAGTCAAAGTCGATCAGCAC
CATACACCCGGCCACGATCGCCCGCTGCACCATCGGAAGCCGCTGGAAGTCGACATCGTACTCGT
TAGCGTAGGAAAACGTCTCCTTTTTGAGCCCCAACCACCGCCGCCGGATCTGGGCCACCTCTTCC
CCGTCCTCGTTGTTGATGAAAAACGTAAACCCAAGCGGCTTGGCGCTGACAAACCCAAACTCCAC
GGGGCGGTACGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAA
Found at i:94102 original size:16 final size:16
Alignment explanation
Indices: 94031--94110 Score: 96
Period size: 16 Copynumber: 5.2 Consensus size: 16
94021 GGTTCCCTTT
**
94031 TGTTGTGTGTACTGTG
1 TGTTGTGTGTGTTGTG
94047 TGTT-T-TGTG-TGTG
1 TGTTGTGTGTGTTGTG
94060 TGTTGTGTGT-TGTGTG
1 TGTTGTGTGTGT-TGTG
94076 TGTTGTGTGTGTTGTG
1 TGTTGTGTGTGTTGTG
*
94092 TGTTGTGTGTGTTATG
1 TGTTGTGTGTGTTGTG
94108 TGT
1 TGT
94111 ATTGTTAGAT
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
13 8 0.14
14 4 0.07
15 4 0.07
16 40 0.70
17 1 0.02
ACGTcount: A:0.03, C:0.01, G:0.40, T:0.56
Consensus pattern (16 bp):
TGTTGTGTGTGTTGTG
Left flanking sequence: Indices 93531 -- 94030
TCACCGGGTGGATGTTCTTTTCGATGTAGGGAAACGTCTGGGCGAGGATTTCGCCGGCCAAGATG
ATCACGGTGGTGGTGCCGTCGCCCACCTCCTCGTCCTGGGTGCGCAGGAGCTCAATCATCAGCTT
GGCTGCCGGGTGCAGCACGTCGATCTCGCGGAGAATGGCGTGGCCGTCGTTGGTGAGCACGATCC
CGCCCATGGGGTCCAAAAGCATCTTGAGCATGGCCTTGGGGCCCAAACAGGTGCGGATGATGTCA
GCCACCGCCTTGGCGGCGGTGATGTTGGCCACCTGCGCCTGCCGGCCGCTCTGCCGCTCGGTGTT
GGCGTTCAAATACACCACGGGAGCTTGCATTGGATGGGTGTGGTCGCCACGGGTGGTGGAATTTT
TCAACGCGCGGGCGCTACCATGGGAAGAGAGGAGGTGGGTGAGGGGATGGAGGTGGGTTGTAGGG
GTTAGGCAATGTATTGTAGTGCAATTGTGGTGGATGGTTCCCTTT
Right flanking sequence: Indices 94111 -- 94610
ATTGTTAGATAGGTGGTATGATCGAGTGGTTACCGTCGCGACTCGAGAATGGTAGTGAACGCGTA
TGTAATTAGATATTATAGGTGACTGGATTAATTATAGACTATAGGTGGCTGGGCACGAGACACAA
TTGCCATTGGCTGTGACTTATGCCATTGTTGAGTCTGAAAACCGAATCAATTGTCAGTTGTCTAC
TCACTGTCTTCCGCCTATTCACTGTCCTCTGTAAAACAGTCAAAGTCGATCAGCACCATACACCC
GGCCACGATCGCCCGCTGCACCATCGGAAGCCGCTGGAAGTCGACATCGTACTCGTTAGCGTAGG
AAAACGTCTCCTTTTTGAGCCCCAACCACCGCCGCCGGATCTGGGCCACCTCTTCCCCGTCCTCG
TTGTTGATGAAAAACGTAAACCCAAGCGGCTTGGCGCTGACAAACCCAAACTCCACGGGGCGGTA
CGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAACATGTGGTA
Found at i:94207 original size:26 final size:26
Alignment explanation
Indices: 94178--94227 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
94168 AACGCGTATG
* *
94178 TAATTAGATATTATAGGTGACTGGAT
1 TAATTAGAGACTATAGGTGACTGGAT
* *
94204 TAATTATAGACTATAGGTGGCTGG
1 TAATTAGAGACTATAGGTGACTGG
94228 GCACGAGACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TAATTAGAGACTATAGGTGACTGGAT
Left flanking sequence: Indices 93678 -- 94177
CGTCGATCTCGCGGAGAATGGCGTGGCCGTCGTTGGTGAGCACGATCCCGCCCATGGGGTCCAAA
AGCATCTTGAGCATGGCCTTGGGGCCCAAACAGGTGCGGATGATGTCAGCCACCGCCTTGGCGGC
GGTGATGTTGGCCACCTGCGCCTGCCGGCCGCTCTGCCGCTCGGTGTTGGCGTTCAAATACACCA
CGGGAGCTTGCATTGGATGGGTGTGGTCGCCACGGGTGGTGGAATTTTTCAACGCGCGGGCGCTA
CCATGGGAAGAGAGGAGGTGGGTGAGGGGATGGAGGTGGGTTGTAGGGGTTAGGCAATGTATTGT
AGTGCAATTGTGGTGGATGGTTCCCTTTTGTTGTGTGTACTGTGTGTTTTGTGTGTGTGTTGTGT
GTTGTGTGTGTTGTGTGTGTTGTGTGTTGTGTGTGTTATGTGTATTGTTAGATAGGTGGTATGAT
CGAGTGGTTACCGTCGCGACTCGAGAATGGTAGTGAACGCGTATG
Right flanking sequence: Indices 94228 -- 94727
GCACGAGACACAATTGCCATTGGCTGTGACTTATGCCATTGTTGAGTCTGAAAACCGAATCAATT
GTCAGTTGTCTACTCACTGTCTTCCGCCTATTCACTGTCCTCTGTAAAACAGTCAAAGTCGATCA
GCACCATACACCCGGCCACGATCGCCCGCTGCACCATCGGAAGCCGCTGGAAGTCGACATCGTAC
TCGTTAGCGTAGGAAAACGTCTCCTTTTTGAGCCCCAACCACCGCCGCCGGATCTGGGCCACCTC
TTCCCCGTCCTCGTTGTTGATGAAAAACGTAAACCCAAGCGGCTTGGCGCTGACAAACCCAAACT
CCACGGGGCGGTACGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAACATGTGGTACTTCGTT
CGCGAGAACCCCACCCGTTTGTACTGGGGCTGGCCTTTTTCGTCGCCCACCACGAGAAACACACT
CACCTGGGAGTGGAACAAACTAAAGGCCCGGGACACCATGAGCAC
Found at i:95085 original size:24 final size:24
Alignment explanation
Indices: 95053--95140 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
95043 GTCGACTATC
*
95053 GGGGGTGGGTTGGTGTCATGTTTT
1 GGGGGTGGGTTGGTATCATGTTTT
* *
95077 GGGGATGGGTTGGTATCATGTTTG
1 GGGGGTGGGTTGGTATCATGTTTT
*
95101 GGGGGTGGGTTGGTTTCATGTTTT
1 GGGGGTGGGTTGGTATCATGTTTT
*
95125 TGGGGTGGGTTGGTAT
1 GGGGGTGGGTTGGTAT
95141 TCTTTGGGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.07, C:0.03, G:0.49, T:0.41
Consensus pattern (24 bp):
GGGGGTGGGTTGGTATCATGTTTT
Left flanking sequence: Indices 94553 -- 95052
CCACGGGGCGGTACGGGGTGCCCGTGCTCAACACGTACTTGCGCTTGAACATGTGGTACTTCGTT
CGCGAGAACCCCACCCGTTTGTACTGGGGCTGGCCTTTTTCGTCGCCCACCACGAGAAACACACT
CACCTGGGAGTGGAACAAACTAAAGGCCCGGGACACCATGAGCACGGGGACACCGTGGAGGTCAA
AGAACTCGATCACGTAGGCCCGGCTCGCAGGACACAACTGGCGCTGGAACAGCGCTTTGAGCGTG
CCCGCGTCCTGCTCCCGGATGTAGCCTAGGAGGTTTCCCGACGGGTCGGAGACCAGGTACTGGTT
GAGACAGTTGTGTCCGAGCCACTCGTTGATGGAGCTCTCGTGGCGGCGAACGTGGAGGCCGCTTG
GGGAGAAGATGGACCTGTAGGCGGGAGTGACGTCAGCGTCGCTGGGCTCGTGGTCGGTGTACGCG
GGCGGCTCGCCCTTGATGTCAGCCTGGTAGTCGTAGTCGACTATC
Right flanking sequence: Indices 95141 -- 95640
TCTTTGGGGTCGGGTTGGCTCCGTTCTCATACACTGGAGGGGGCGACTCGTGGCTCTCTGAGGAC
GCTGGCGTCTCACCCAGCTGCTTGGATGGTTGCTTACACGGCTGAACTTCGCTTTTTTTTGTCAT
ACAGCCCTCGAGGGGGTGCTTTGTCTTTATAGCCTCGTATCCGGGCACTGAAACGGTTGCATACG
TCTGCATCAGGGGTCCACCGTCAGGAGCGCTGGAAGACTGCCATGGAAGTCTCGCGTTTGCAGCC
AACGGTCAACTAGTGGTAGTCTGTGACTCCTGTAACCCCTGTACTTCACCAGATACATTGTACCC
TTCCTTATGGCTTGTTGCGTGAATCCCAGGCTGCGAAAGCGCCTGCGGGCTGTCAGTGTCACGGA
CACATTCGCCAGCAGGAGCCTGAGTTTTCTTGGCTTCCAGCCCCTTACCTACACAATGTGTCCTC
ACCCCTACAATTCCAGCTCTCCCGATGCTTCTGGGTGCTACGTGG
Found at i:100484 original size:10 final size:10
Alignment explanation
Indices: 100448--100510 Score: 94
Period size: 10 Copynumber: 6.5 Consensus size: 10
100438 ATGGTTGGTT
100448 ACGGTGTGCG
1 ACGGTGTGCG
100458 AC-GTGTGCG
1 ACGGTGTGCG
100467 AC-GTGTGCG
1 ACGGTGTGCG
100476 ACGGTGTGCG
1 ACGGTGTGCG
*
100486 ACGGTATGCG
1 ACGGTGTGCG
*
100496 ACGGTATGCG
1 ACGGTGTGCG
100506 ACGGT
1 ACGGT
100511 TTGTTGATGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
9 18 0.35
10 33 0.65
ACGTcount: A:0.14, C:0.21, G:0.44, T:0.21
Consensus pattern (10 bp):
ACGGTGTGCG
Left flanking sequence: Indices 99948 -- 100447
GGCGCCCGAGGTGCTCACCAAGAACCGCAACTACACCCTGAAGGTGGACGTGTGGCTGGCTGGGG
TGTTGCTCTACGTGTGTCTCTGCGGGTTTCCCCCGTTTCTGGAGGAGTTGGCGCCTCCGTCGATG
AAGGAGCAGATTGTCGAGGGCAAGTACGCTTTCTTTTCGCCCTACTGGGACGATATCGACGACAT
GGCGCTCGACTGCATCGACAAGATGCTTGTGGTGGATGCTGAGCATCGCTACAGCGTGGCCGACG
TGCTAGCGCACCCGTGGTTTGTTGCCAGCGAGCTGGACGAGTCGCAGCCGTATCTGATGGACATC
CTGCTGGGGCCGCTGGACTGGTCCCAGGGGACCCAGGGCAGTTTCCGGCGAATAGCGGTGCGCCA
GGACTCGATTCCGATTACGTTGAAGGAGCGACAGGAGTTGCAGGTGCCCATCGAGCTTGCCGAGT
AGGCCCCGTTGCATGGTATATAAGTATAATAGACAATGGTTGGTT
Right flanking sequence: Indices 100511 -- 101010
TTGTTGATGATCTGTATTGGTATTTGTACGCTTATGGCGTGTCTTGAGTACGAGGACCCCCTACC
CATGTAGTTATTGTAATCTACTTCGCTGCTATCCAGTACAATAAGAGCATGAGAGCCAACTTCGC
CTCACGTGTTGGAGGGATCGATGTTGCATTGCAACTGTGTGACCACCACTTGCCCTCTTTCACTT
ATGCACGCTACACAGCTCGTACAGGTCGGGTGCAAATTTGGTCTTTGTCCTCGTGCGACATTGGT
GCACTTTGCCTCTTTGGGACGGCGTGCGACCTACCTCCACGATACGTGCACTGAGGCCATCAAGA
GCCACTACGGAGTTCCCAATACTCATCCAATACTCATCTGTTCTCTAACGCGACCACCCCGCCCA
GTCGTGTTCTTTCCCTTTCCTTAACCACAAACTCTGCCAGCCTGCACAAGCGTTTCCAAATAGCA
TATAAACACTGGTTCCCCCTCCCACCAGTTTTTTCTTCTCTATAC
Done.