sallet_3.scaffold.fasta.s22.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold37
Parameters: 2 7 7 80 10 50 500
Length:  55867

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--868	141	6.2	141	82	4	1014	27	26	24	20	1.99
5257--5426	85	2.0	85	98	0	331	28	24	22	24	1.99
12234--12261	9	3.1	9	100	0	56	21	67	0	10	1.20
12284--12519	13	17.4	13	78	13	151	11	35	4	47	1.61
12392--12484	32	3.0	32	81	6	113	11	36	2	49	1.52
12456--12522	12	5.4	12	87	7	98	16	34	1	47	1.56
12919--12952	15	2.4	14	90	5	50	8	70	20	0	1.13
14333--14360	9	3.1	9	100	0	56	10	0	42	46	1.38
16068--16101	8	4.2	8	96	0	59	8	0	52	38	1.33
17354--17443	13	7.2	13	86	7	80	23	58	0	17	1.38
17347--17425	39	2.0	40	85	2	106	21	59	0	18	1.38
17415--17444	12	2.5	12	100	0	60	23	60	0	16	1.36
19034--19102	18	3.8	18	84	0	84	50	5	28	14	1.66
21805--21905	45	2.3	44	93	3	175	41	21	19	16	1.90
21890--21934	21	2.1	21	92	8	74	51	22	15	11	1.75
21890--21934	10	4.3	10	88	8	63	51	22	15	11	1.75
22727--22788	21	3.1	21	81	11	85	14	38	30	16	1.88
22752--22791	18	2.2	18	95	0	71	22	40	27	10	1.86
23063--23097	18	1.9	18	94	0	61	2	34	42	20	1.66
23845--23969	12	9.7	12	75	20	94	3	22	51	23	1.63
23857--23900	21	2.1	21	95	0	79	2	22	52	22	1.58
23844--23909	33	2.0	33	100	0	132	3	24	51	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23888--23972	30	2.9	30	89	3	138	3	22	50	23	1.64
25953--26007	18	3.1	18	82	10	67	16	3	60	20	1.51
25999--26111	8	14.5	8	75	12	74	13	5	44	37	1.66
26027--26092	16	4.2	15	90	3	87	12	9	40	37	1.74
26346--26378	11	3.0	11	100	0	66	9	45	27	18	1.79
26468--26528	29	2.1	29	84	9	79	22	27	32	16	1.96
26572--26621	15	3.3	15	97	2	91	8	46	20	26	1.78
26726--26808	34	2.4	34	88	4	114	13	36	15	34	1.87
26838--26912	33	2.3	33	86	4	98	14	34	13	37	1.85
28762--28792	10	3.1	10	90	0	53	12	38	38	9	1.77
30371--30400	15	2.0	15	100	0	60	13	66	13	6	1.43
30449--30525	21	3.7	21	96	0	136	18	53	19	9	1.71
31096--31156	20	3.0	20	85	0	86	21	31	24	22	1.98
31498--31570	19	3.8	19	90	0	110	38	31	1	28	1.66
34582--34685	12	8.9	12	84	6	133	63	0	34	1	1.06
34998--35067	17	4.2	17	87	1	97	38	28	14	18	1.90
34998--35067	34	2.1	34	91	2	115	38	28	14	18	1.90
35642--35666	13	1.9	13	100	0	50	48	28	16	8	1.74
35802--35834	9	3.7	9	91	0	57	45	51	0	3	1.16
35896--35945	22	2.3	22	85	0	64	10	44	6	40	1.63
37614--37655	21	2.0	21	81	9	50	7	26	47	19	1.74
38663--38909	42	5.8	42	76	11	148	27	8	29	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38733--38855	40	3.0	40	77	5	131	26	7	30	35	1.84
38710--38937	82	2.7	84	78	10	234	26	9	30	33	1.88
38836--38934	43	2.3	43	94	0	171	24	11	31	33	1.90
38988--39034	10	4.7	10	97	0	85	36	10	21	31	1.88
39001--39090	19	4.7	19	81	4	83	33	16	22	27	1.95
42515--42546	15	2.1	15	94	0	55	28	12	25	34	1.92
42650--42685	12	2.8	13	87	8	56	38	8	33	19	1.82
42650--42689	13	3.2	13	89	7	64	40	10	30	20	1.85
43235--43270	12	2.9	13	84	16	58	30	8	38	22	1.83
43217--43320	48	2.2	48	78	0	109	45	6	32	15	1.72
43289--43381	12	7.8	12	85	4	80	50	6	32	10	1.63
45189--45234	14	3.3	14	96	0	83	28	0	50	21	1.49
45844--45887	12	3.7	12	93	0	70	27	45	0	27	1.54
45843--45895	24	2.2	24	79	0	61	30	47	0	22	1.52
45892--45941	22	2.3	22	89	6	75	32	46	6	16	1.71
45894--45962	22	3.1	22	83	4	68	34	44	8	11	1.72
47059--47088	12	2.5	12	100	0	60	6	40	26	26	1.81
47648--47706	24	2.4	24	86	8	75	22	0	64	13	1.28
47650--47704	12	4.5	12	78	13	67	21	0	63	14	1.30
51390--51448	15	3.8	15	88	4	73	27	20	11	40	1.87
52398--52426	12	2.4	12	100	0	58	13	34	24	27	1.93
53592--53640	21	2.3	21	96	0	89	18	20	44	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53658--53718	9	6.8	9	94	0	95	47	32	18	1	1.58
54685--54732	21	2.3	21	100	0	96	18	45	31	4	1.68
55843--55867	1	25.0	1	100	0	50	0	0	100	0	0.00

Tables:   1

The End!