Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold37
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 55867
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:255 original size:141 final size:141
Alignment explanation
Indices: 1--868 Score: 1014
Period size: 141 Copynumber: 6.2 Consensus size: 141
* *
1 AGTTCACCAGTACGTGGACTACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTGTT
1 AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTATT
* * * *
66 GTCACCACAGACGAAGAGGGTGTGCTTACAACCAGCACATCACTATTCCCACGACCAACCTGCGA
66 GTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGTGA
131 AGAGTGCACCG
131 AGAGTGCACCG
* *
142 AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGGTTATC
1 AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTATT
* * * *
207 GTGACGACGGACGAAGAGGGTGTGCTTACAACCAGCACTTCGCTATTCCCACGACCAACCTGTGA
66 GTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGTGA
272 AGAGTGCACCG
131 AGAGTGCACCG
* *
283 AGTTCACCAGTACGTGGACTACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTGTT
1 AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTATT
* *
348 GTCACCACAGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGCGA
66 GTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGTGA
413 AGAGTGCACCG
131 AGAGTGCACCG
* *
424 AGTTTACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTGTT
1 AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTATT
* *
489 GTCACCACGGACGAAGAGGGTGTGCTTACAACCAGCACATCGCTATTCCCAAGACCAACCTGTGA
66 GTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGTGA
* *
554 AGAATGTACTAC-
131 AGAGTGCAC--CG
* ** * * * * * * * * * * *
566 A-TTCACAACCACATGGGTCACCACTG-TG-G-ATGGTA--TGATCAAGACGGTTTCAGGAGAGG
1 AGTTCACCAGTACGT-GG--ACCACTGACGAGAACGG-AGCT-ACCTATACCGATTCAGGTGTGA
* * * * * ** * * * * * * * * *
625 TAATTGTAACTACTGATGCCGAGGGAG-GCCTTTCTACTACCACATCGATTTTCCCCCAACCCAC
61 TTATTGTCACCACGGACGAAGAGGGTGTG-CTTACAACCACCACATCGCTATTCCCACGACCAAC
689 CTGTGAAGAGTGCACCG
125 CTGTGAAGAGTGCACCG
* * * * * * *
706 AGTTCACCAGTACGTGGACCACTGACGAAAATGGAGCTACCTATACTGACTCAGGAGTGGTTATC
1 AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTATT
* * * * *
771 GTGACGACGGACGAGGATGGTGTGCTTACGACCACCACATCGCTATTCCCACGACCAACCTGTGA
66 GTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGTGA
* *
836 TGAGTGCACTG
131 AGAGTGCACCG
847 AGTTCACCAGTACGTGGACCAC
1 AGTTCACCAGTACGTGGACCAC
869 AACTAACAAC
Statistics
Matches: 614, Mismatches: 97, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
138 7 0.01
139 2 0.00
140 6 0.01
141 583 0.95
142 7 0.01
143 2 0.00
144 7 0.01
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (141 bp):
AGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGATTCAGGTGTGATTATT
GTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCCCACGACCAACCTGTGA
AGAGTGCACCG
Left flanking sequence: None
Right flanking sequence: Indices 869 -- 1368
AACTAACAACGATGGCTCCGTTCAAACCGAGTCTGGGGTTGTTGTAATAACTACGGATGCGGAGG
GGGCCATGACCACTTTCACGTCGTTATTTCCTCAACCAACTGCTGAATGCATGGAGTGCACTGAG
TTTACGTCGACATGGACAACCACTGCAGACGATGGGTCCCTTCAAACGGAATCAGGGGTGATTCT
AGTGACTACAGATGAGTCAGGGGCCTTAACAACCATTACTTCGTTGTTCCCAAACTACGATGACT
GCCCTGAGTGCACGGAGTTTACTACAGAGTGGACAACCACGGCACAAGATGGATCCGTGATAACT
GAGTCCGGTGTGGTATTGGTCACCACTGATGAAGCTGGGATGCTTACAACTGCAACTTCTCTTTT
CCCCGGGGCGTGTGATGGCTGTACAGAGTTCACCACTAGTTGGACGACCACGGCAGGAGACGGAT
CTGTCCAAACGGACCTGGGGGTGGTTATCATCACCACAAACGAAG
Found at i:5400 original size:85 final size:85
Alignment explanation
Indices: 5257--5426 Score: 331
Period size: 85 Copynumber: 2.0 Consensus size: 85
5247 TCCAAAACTT
*
5257 CACCGTGTGAACCAAAAACCCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
1 CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
5322 CTTGATTCACCTGACACGGC
66 CTTGATTCACCTGACACGGC
5342 CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
1 CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
5407 CTTGATTCACCTGACACGGC
66 CTTGATTCACCTGACACGGC
5427 TACGCCTTTC
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (85 bp):
CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
CTTGATTCACCTGACACGGC
Left flanking sequence: Indices 4757 -- 5256
TCACCAGACACGTCGTCCTCCGTTTCCATATTATTTGCAATCATCATGTAAGAGGGTAAGTGACC
AAGCCTTCCCATTTGTGTTTTCCCCACCGAGAGCTTCTGAGTTTCTCTGACCCGATAACAAATCC
GAGGACGACTTGCAACACCTAGATTCGTACTTCAACACATCCTGCCTGGAAAAGCTTGCTGAGAA
CAGAATATCTCGTTGAGTTTTGTGATACTGATTGGCACAATACTGTGAATCAGATGACACGAACG
TTGTAGCGTAACGATCTGACATGCAGAAAGTTGCATCGCCGTTGTACTCAAAAAGAAACTTTGCA
AATCGAGAAAGCCGGTTTCTTTAGTAAGGGGATGGAGGTGTCACATCGGTGGGCATTTTTTGGAT
AGCAAGGTGAGAATTGAGGTCCTTTGAACTTTGGTTGCCGAGCATCTTTGAGGGTTCATCTCCTT
TCGCCATGCGTGCGCTATGGAAGTCGCAGAACAATTCCAAAACTT
Right flanking sequence: Indices 5427 -- 5926
TACGCCTTTCAGCAGCGTATCAACGCTTGCAACTGAAGTAAACACCGGCTAAACAGCAGCCACTT
CTGTGATCACAATTGATGGGTGGAATAACTCAATTCACGGTTGTGACTGATCAAAATCGGGAGGT
GCCAACACCACGACAAGTCCGAACGGGCACATAATAATTGAGTCTGGATTGGTCAAAGATGTAAC
TGGCCGAGAAGAGACCACATGGGTCCAACGTCGTTAGCCATTTGGTTCGGTCCATCCTGGAACAG
AGTTCATTATTATCACTGCCGCGAATAGACACGTAGTCAACGCCAATGCCTCAGACTCTGCAAGG
GTTGGTAACAACCGTGGAGTGTGATGGTGAAGATTCCAGGGCATGACGTTTCATTCCGGCTGAGC
AACCACATCGATGGGTTTCTCAAAGATTCTCTCCTGAAACGCTCGGACAACCTGTAGAAGATAGT
GTCAACACTATCGGTTGACCTGAGGTCTGTTAAATCTCAGGTGGC
Found at i:12248 original size:9 final size:9
Alignment explanation
Indices: 12234--12261 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
12224 CCATCCAAAT
12234 CCATCCCAC
1 CCATCCCAC
12243 CCATCCCAC
1 CCATCCCAC
12252 CCATCCCAC
1 CCATCCCAC
12261 C
1 C
12262 AACCTCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.68, G:0.00, T:0.11
Consensus pattern (9 bp):
CCATCCCAC
Left flanking sequence: Indices 11734 -- 12233
CACGACGGGATTCGAACTCCGGAGCTTCATGAACGGACGCAACACATCGCGGGACATCCCCATGG
GAGCAACCAAGTTGGTGCCCACGACGTCGAGCATGGACTGGGTGCGGGTGCGCATGAGCAACCCG
CCGTCGCCGATGCCCGCGCAGTTGACGAGAATGGTGGCGTCGTCGTACCGGACCTCGTCCCAGTG
CCGGCCCACGTCCACCACCTGGAAGCGGTGGCCGTCCCCGGGCAACGACGCCACCGCCTGCTGGA
GGAGGGTGCGGTTGCGGGCTATCAACGTGGTGGGGATGTGATGTGCCGCCATCGCCTGGGCTATC
GCGAGGCCGAGCCCACGGGATCCCCCGGTGATCAATGCTCTCATGGTGGGTGAATTTGTGGTGCG
AGCCCTGGCCAAATCCGATCGTTCTATTTTGGTGGGTGGCCGTGGGTGGAAAAAGGGTCCAGGCT
AGGTCCAAAGTCGTATAGGGGATATAAATTCGAATCCATCCAAAT
Right flanking sequence: Indices 12262 -- 12761
AACCTCTAATCACAGCGGATTATCTTCCTCTACTGTCTTACTCTGTCTTCCTCTACTGTTTTCCC
TCTCTACTGTCTTCCTCTACTGTCTTCCTCTACTGTCTTCCTCTAATGTTTTCCACTACTGTCTT
TCTCTACTGTTTTCCCTCTCTACTATCTTCTCTGTCTACTATCTTCCCTTTCTACTATCTTCCCT
CTCTACTATCTTCTCTACTATCTTCTCTACTATCTTCTCTACTATCATCCATCTACTGTCTTCTC
TGTCGCCCTGCAGGACCGCAATGCTATCGTTTACGTCAACGATGGCCCCATCCATGCACCGTCGC
GATCGGTTGTCGTTTACCGTCACCACCGCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTG
ACGGCAGCCCAAAACGGCAGCAAAACCGTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTAT
ATACCGTATATCCTCGCTAGCTGCTAGCGACCGCCGCATCGCAAG
Found at i:12305 original size:13 final size:13
Alignment explanation
Indices: 12284--12519 Score: 151
Period size: 13 Copynumber: 17.4 Consensus size: 13
12274 CAGCGGATTA
12284 TCTTCCTCTACTG
1 TCTTCCTCTACTG
*
12297 TCTT--ACT-CTG
1 TCTTCCTCTACTG
12307 TCTTCCTCTACTG
1 TCTTCCTCTACTG
*
12320 TTTTCCCTCTCTACTG
1 TCTT--C-CTCTACTG
12336 TCTTCCTCTACTG
1 TCTTCCTCTACTG
12349 TCTTCCTCTACTG
1 TCTTCCTCTACTG
*
12362 TCTTCCTCTAATG
1 TCTTCCTCTACTG
* *
12375 TTTTCCACTACTG
1 TCTTCCTCTACTG
*
12388 TCTTTCTCTACTG
1 TCTTCCTCTACTG
* *
12401 TTTTCCCTCTCTACTA
1 TCTT--C-CTCTACTG
*
12417 TCTTCTCTGTCTACTA
1 TCTTC-C--TCTACTG
*
12433 TCTTCCCTTTCTACTA
1 TCTT-CC--TCTACTG
*
12449 TCTTCCCTCTCTACTA
1 TCTT--C-CTCTACTG
*
12465 TCTT-CTCTACTA
1 TCTTCCTCTACTG
*
12477 TCTT-CTCTACTA
1 TCTTCCTCTACTG
*
12489 TCTT-CTCTACTA
1 TCTTCCTCTACTG
*
12501 TCATCCATCTACTG
1 TCTTCC-TCTACTG
12515 TCTTC
1 TCTTC
12520 TCTGTCGCCC
Statistics
Matches: 188, Mismatches: 19, Indels: 31
0.79 0.08 0.13
Matches are distributed among these distances:
10 7 0.04
11 2 0.01
12 37 0.20
13 67 0.36
14 14 0.07
15 1 0.01
16 56 0.30
17 3 0.02
18 1 0.01
ACGTcount: A:0.12, C:0.36, G:0.05, T:0.48
Consensus pattern (13 bp):
TCTTCCTCTACTG
Left flanking sequence: Indices 11784 -- 12283
GGGACATCCCCATGGGAGCAACCAAGTTGGTGCCCACGACGTCGAGCATGGACTGGGTGCGGGTG
CGCATGAGCAACCCGCCGTCGCCGATGCCCGCGCAGTTGACGAGAATGGTGGCGTCGTCGTACCG
GACCTCGTCCCAGTGCCGGCCCACGTCCACCACCTGGAAGCGGTGGCCGTCCCCGGGCAACGACG
CCACCGCCTGCTGGAGGAGGGTGCGGTTGCGGGCTATCAACGTGGTGGGGATGTGATGTGCCGCC
ATCGCCTGGGCTATCGCGAGGCCGAGCCCACGGGATCCCCCGGTGATCAATGCTCTCATGGTGGG
TGAATTTGTGGTGCGAGCCCTGGCCAAATCCGATCGTTCTATTTTGGTGGGTGGCCGTGGGTGGA
AAAAGGGTCCAGGCTAGGTCCAAAGTCGTATAGGGGATATAAATTCGAATCCATCCAAATCCATC
CCACCCATCCCACCCATCCCACCAACCTCTAATCACAGCGGATTA
Right flanking sequence: Indices 12520 -- 13019
TCTGTCGCCCTGCAGGACCGCAATGCTATCGTTTACGTCAACGATGGCCCCATCCATGCACCGTC
GCGATCGGTTGTCGTTTACCGTCACCACCGCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAAC
TGACGGCAGCCCAAAACGGCAGCAAAACCGTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGT
ATATACCGTATATCCTCGCTAGCTGCTAGCGACCGCCGCATCGCAAGGCACCCCCGTGCACCCAG
CCTCGTGCACCCGCCATTTGCTCGCGTTCCCGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTT
CGCGGTCATGACTAGCAAGCCTGCACGGGGGCCCAACAGAAATGGTCACGGTAGCAGGCGATATA
TAGAGCAGGCCGCCGCCCAGCCACCGCCGCCCCCGCCACCGCCAACCCCCGAAACGCCGTCCCCG
CTCTCCCTACCCCGTAAAACCCCTGGTTGGCCCCCTACCACCCTG
Found at i:12439 original size:32 final size:32
Alignment explanation
Indices: 12392--12484 Score: 113
Period size: 32 Copynumber: 3.0 Consensus size: 32
12382 CTACTGTCTT
* *
12392 TCTCTACTGTTTTCCCTCTCTACTATCTTCTC
1 TCTCTACTATCTTCCCTCTCTACTATCTTCTC
* * *
12424 TGTCTACTATCTTCCCTTTCTACTATCTTCCC
1 TCTCTACTATCTTCCCTCTCTACTATCTTCTC
12456 TCTCTACTATC-T---TCTCTACTATCTTCTC
1 TCTCTACTATCTTCCCTCTCTACTATCTTCTC
12484 T
1 T
12485 ACTATCTTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 15 0.28
31 1 0.02
32 37 0.70
ACGTcount: A:0.12, C:0.37, G:0.02, T:0.49
Consensus pattern (32 bp):
TCTCTACTATCTTCCCTCTCTACTATCTTCTC
Left flanking sequence: Indices 11892 -- 12391
GAATGGTGGCGTCGTCGTACCGGACCTCGTCCCAGTGCCGGCCCACGTCCACCACCTGGAAGCGG
TGGCCGTCCCCGGGCAACGACGCCACCGCCTGCTGGAGGAGGGTGCGGTTGCGGGCTATCAACGT
GGTGGGGATGTGATGTGCCGCCATCGCCTGGGCTATCGCGAGGCCGAGCCCACGGGATCCCCCGG
TGATCAATGCTCTCATGGTGGGTGAATTTGTGGTGCGAGCCCTGGCCAAATCCGATCGTTCTATT
TTGGTGGGTGGCCGTGGGTGGAAAAAGGGTCCAGGCTAGGTCCAAAGTCGTATAGGGGATATAAA
TTCGAATCCATCCAAATCCATCCCACCCATCCCACCCATCCCACCAACCTCTAATCACAGCGGAT
TATCTTCCTCTACTGTCTTACTCTGTCTTCCTCTACTGTTTTCCCTCTCTACTGTCTTCCTCTAC
TGTCTTCCTCTACTGTCTTCCTCTAATGTTTTCCACTACTGTCTT
Right flanking sequence: Indices 12485 -- 12984
ACTATCTTCTCTACTATCATCCATCTACTGTCTTCTCTGTCGCCCTGCAGGACCGCAATGCTATC
GTTTACGTCAACGATGGCCCCATCCATGCACCGTCGCGATCGGTTGTCGTTTACCGTCACCACCG
CTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTGACGGCAGCCCAAAACGGCAGCAAAACCG
TTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTATATACCGTATATCCTCGCTAGCTGCTAGC
GACCGCCGCATCGCAAGGCACCCCCGTGCACCCAGCCTCGTGCACCCGCCATTTGCTCGCGTTCC
CGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTTCGCGGTCATGACTAGCAAGCCTGCACGGGG
GCCCAACAGAAATGGTCACGGTAGCAGGCGATATATAGAGCAGGCCGCCGCCCAGCCACCGCCGC
CCCCGCCACCGCCAACCCCCGAAACGCCGTCCCCGCTCTCCCTAC
Found at i:12473 original size:12 final size:12
Alignment explanation
Indices: 12456--12522 Score: 98
Period size: 12 Copynumber: 5.4 Consensus size: 12
12446 CTATCTTCCC
12456 TCTCTACTATCT
1 TCTCTACTATCT
12468 TCTCTACTATCT
1 TCTCTACTATCT
12480 TCTCTACTATCT
1 TCTCTACTATCT
12492 TCTCTACTATCAT
1 TCTCTACTATC-T
* *
12505 CCATCTACTGTCT
1 TC-TCTACTATCT
12518 TCTCT
1 TCTCT
12523 GTCGCCCTGC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
12 38 0.76
13 4 0.08
14 8 0.16
ACGTcount: A:0.16, C:0.34, G:0.01, T:0.48
Consensus pattern (12 bp):
TCTCTACTATCT
Left flanking sequence: Indices 11956 -- 12455
GTGGCCGTCCCCGGGCAACGACGCCACCGCCTGCTGGAGGAGGGTGCGGTTGCGGGCTATCAACG
TGGTGGGGATGTGATGTGCCGCCATCGCCTGGGCTATCGCGAGGCCGAGCCCACGGGATCCCCCG
GTGATCAATGCTCTCATGGTGGGTGAATTTGTGGTGCGAGCCCTGGCCAAATCCGATCGTTCTAT
TTTGGTGGGTGGCCGTGGGTGGAAAAAGGGTCCAGGCTAGGTCCAAAGTCGTATAGGGGATATAA
ATTCGAATCCATCCAAATCCATCCCACCCATCCCACCCATCCCACCAACCTCTAATCACAGCGGA
TTATCTTCCTCTACTGTCTTACTCTGTCTTCCTCTACTGTTTTCCCTCTCTACTGTCTTCCTCTA
CTGTCTTCCTCTACTGTCTTCCTCTAATGTTTTCCACTACTGTCTTTCTCTACTGTTTTCCCTCT
CTACTATCTTCTCTGTCTACTATCTTCCCTTTCTACTATCTTCCC
Right flanking sequence: Indices 12523 -- 13022
GTCGCCCTGCAGGACCGCAATGCTATCGTTTACGTCAACGATGGCCCCATCCATGCACCGTCGCG
ATCGGTTGTCGTTTACCGTCACCACCGCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTGA
CGGCAGCCCAAAACGGCAGCAAAACCGTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTATA
TACCGTATATCCTCGCTAGCTGCTAGCGACCGCCGCATCGCAAGGCACCCCCGTGCACCCAGCCT
CGTGCACCCGCCATTTGCTCGCGTTCCCGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTTCGC
GGTCATGACTAGCAAGCCTGCACGGGGGCCCAACAGAAATGGTCACGGTAGCAGGCGATATATAG
AGCAGGCCGCCGCCCAGCCACCGCCGCCCCCGCCACCGCCAACCCCCGAAACGCCGTCCCCGCTC
TCCCTACCCCGTAAAACCCCTGGTTGGCCCCCTACCACCCTGGCT
Found at i:12949 original size:15 final size:14
Alignment explanation
Indices: 12919--12952 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
12909 ATAGAGCAGG
12919 CCGCCGCCCAGCCA
1 CCGCCGCCCAGCCA
*
12933 CCGCCGCCCCCGCCA
1 CCGCCG-CCCAGCCA
12948 CCGCC
1 CCGCC
12953 AACCCCCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.09, C:0.71, G:0.21, T:0.00
Consensus pattern (14 bp):
CCGCCGCCCAGCCA
Left flanking sequence: Indices 12419 -- 12918
TTCTCTGTCTACTATCTTCCCTTTCTACTATCTTCCCTCTCTACTATCTTCTCTACTATCTTCTC
TACTATCTTCTCTACTATCATCCATCTACTGTCTTCTCTGTCGCCCTGCAGGACCGCAATGCTAT
CGTTTACGTCAACGATGGCCCCATCCATGCACCGTCGCGATCGGTTGTCGTTTACCGTCACCACC
GCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTGACGGCAGCCCAAAACGGCAGCAAAACC
GTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTATATACCGTATATCCTCGCTAGCTGCTAG
CGACCGCCGCATCGCAAGGCACCCCCGTGCACCCAGCCTCGTGCACCCGCCATTTGCTCGCGTTC
CCGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTTCGCGGTCATGACTAGCAAGCCTGCACGGG
GGCCCAACAGAAATGGTCACGGTAGCAGGCGATATATAGAGCAGG
Right flanking sequence: Indices 12953 -- 13452
AACCCCCGAAACGCCGTCCCCGCTCTCCCTACCCCGTAAAACCCCTGGTTGGCCCCCTACCACCC
TGGCTGTATACACACCCGCGCACGTGATGAACCTACTAGCCACCGAAATAACCCAGTCTCCACCT
CGGATCCCAGCGCTCACAGCACCCCCGATGAACTCGCTCAAGTTGGTGGTGAACCGCATCCTGCC
GTACTCGCACCCGGAGTACAGCGAGTCCCAGGAGCTGAGGTTGGCTCCCCAGGTGCTGGCGGACC
CCGACGACCCCGACGACCCCCCGGGGCCCCCCCCGGAACCGGCCCAGACGGGCGAAACGGGCACC
ATGGGCCGCTCGGTCACGTCCCAGGTGGTGATGGCGCTCCTCTTTTTCCCCAACTACCTCGTGGT
CCAGCCGCTCTTGCTCCTATGGGCGCTCGCCAAGACCGGGGCCCTGTTCTGGCGGGGCCTGGCCG
TCATCGTCAGCGATACCCCCCAAAAGACCCCCTCGCCCGAGGCAG
Found at i:14347 original size:9 final size:9
Alignment explanation
Indices: 14333--14360 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14323 TATGGTTTAG
14333 TGGTATGGT
1 TGGTATGGT
14342 TGGTATGGT
1 TGGTATGGT
14351 TGGTATGGT
1 TGGTATGGT
14360 T
1 T
14361 TATTGGAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.43, T:0.46
Consensus pattern (9 bp):
TGGTATGGT
Left flanking sequence: Indices 13833 -- 14332
TTCGAGCTCCAGGTGTTTACGGCCCTGGTGCAACAATATGCAGACCCGATCATCGACTGGTTGGA
GCGCGATATCTGGGCAGCCCTCGGCAAGAAACGCACGCCGGGCCCGGTGTTCACCAAGCGGTACT
ACCGCAACGACTGCACGTTCCGCAAGGGGGTCGGGTACTTGAAGGACCTCTCGCGGTTCTTTCCC
CCCGAGGAGCTCAAAAACGTCGTCATCCTAGACAATTCCCCCGTGCTGTATGCACTCCACGAGAC
CAACGCGGTGATGATCGAGGGGTGGATCAACGACCAGCACGACCGCGACTTGCTCAACTTGTTGC
CCATGCTCCGCCTGCTCAGCCACCTGATTGATGTCCGGTACATCTTGCTGTTGCGGGGGGGTGAA
AAAGTGTTTGAGTAGTATTTATTAATAGCATAACTCGAGAGTAAGGAGGGTGGTGGTGGTAGGTG
GGAGGGGTAGGTGGTGTGGTGGTTTCTTTTGGTGGTATGGTTTAG
Right flanking sequence: Indices 14361 -- 14860
TATTGGAACAGTATATTGTGTGGTTGGGTGGTATTGGTCTGGTTGGGTTTGGTGGTGGTATTATG
TGCAGGCTGTGGTGATGGCTGCAACACGAGCCAGGCTGAAGCTACAGTATTGATTGGCTTATCTC
TTAATCTTTTCTTATATTCTGCGGTTGACCGTCAATTCCAACGTCAGTGAGCTCCTACGACTCGA
TCATCTCCACGAACTCTCCCTGTGCACCGTTCTCCTCGACGTCTCTCTTCTCCTGTTCGTCCTCC
CACAGGCCAAAACCGGTGCACCACGCGTAGGGTTTCTCACCACAAATTCTTTTCCCCTTCGGATA
GCGGTAGCACCTGGCAAACATCGTCCCGTCGCCATTTTCCTCGAACATCTCCCACCGGTTGTCGT
CCTTGGGCCAAAAGTTGATGAATACATCACCGCCTTGCCGGAAACGTCCGAAAACTGCCTTCTCC
TCCCAGCCTTCATTCCATTCAACCTTTCCATTCTCCCCATTCTCC
Found at i:16085 original size:8 final size:8
Alignment explanation
Indices: 16068--16101 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
16058 GTGTAGTCTA
*
16068 GTGGTGTG
1 GTGGTATG
16076 GTGGTATG
1 GTGGTATG
16084 GTGGTATG
1 GTGGTATG
16092 GTGGTATG
1 GTGGTATG
16100 GT
1 GT
16102 TAGGTACGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.09, C:0.00, G:0.53, T:0.38
Consensus pattern (8 bp):
GTGGTATG
Left flanking sequence: Indices 15568 -- 16067
GAATGTTGCATGTCAATCTTCCACTCTCGTAGAATCTTTCTGGAAGCGTTGAAATACGGATCAAA
ACGTGACCCGCATACCAATCAATTAGGCGGAGCATGGGCAACGAATTGAGCAAGTCGCGAATCCT
GGTTGAAGCTAAAGAGGAAAGACAGCTTCGCTTACCCTCTTAGTGTCGACGCAGAGTTGACCGCT
GTCTATGAATGATATCGCCATAAGTGACACATTTCGGCTTTATTGGTAGCAATGCCATTCGTACA
TCAATCTAGACCGAGAATAACCACTAAACACAATTCAATCGGACGTTAGGTATTACAACAAGACT
CCCCTCAAGGCACTCAACTCATTTTGTGCCGAGACTACAGGAGTTGAAAGTGGGGCTACCTGGGG
TGATTCTTGCTGGCTCAGCCCAATACATCATGCTGTCGTGGGCGAGAAACTGTTTGAATAGTATT
TATTATTCGTATAACTAGTGTTTAAGGTTGGTTTGGTGTAGTCTA
Right flanking sequence: Indices 16102 -- 16601
TAGGTACGGTTATGTGCAGGCTGCTGTTTGGCTGCAAAATGAGCCAGGCAAGCTACAGGTAGTAC
TTGGTGGCTTACTTTTCAAAGATTTTCCTATATTTTGCAGTTGAACATCAATTCCAAAGTCAGTG
AGCTCTAAGATTCGAGCATCTCCACGATCTCTCCCTGTTCACCGTTCTCCACGTCTCTCTTTGCC
TGTTCGTCCTCCCACTTGCCAAAGAAGGTGCACCGGGCGTAGGGTTGCTCACCACAGTATTTTGT
TCCCTTCGGATAGCGGTAGCACCGTCCCACCCTCTTCCCGTTGCCATTTTCCTCGAACAACTCCC
ACCGGTTGTCGTCCTTGGGCCAAAGGTTGAAGAATACATCATCGTGCAGCCGGAAACGTCCAAAA
ACAGCCTTCTCCTCCCAGCCATCATTCCATTCAATGTTTCCACTATCCAAATCATCGCATTTCCC
ACTTTTGTAGTACTCGTCAGCTTTCTCGGGGGGGCCCTTATAAAG
Found at i:17376 original size:13 final size:13
Alignment explanation
Indices: 17354--17443 Score: 80
Period size: 13 Copynumber: 7.2 Consensus size: 13
17344 TCTCTTCACC
17354 CCAT-CCCCATCA
1 CCATACCCCATCA
17366 CCATACCCCATCA
1 CCATACCCCATCA
*
17379 CTC-TACCCCTTCA
1 C-CATACCCCATCA
* *
17392 CCACACCCCTTCA
1 CCATACCCCATCA
* *
17405 CCACACCCCTTCA
1 CCATACCCCATCA
*
17418 CCCTA-CCCATCA
1 CCATACCCCATCA
*
17430 CCCTA-CCCATCA
1 CCATACCCCATCA
17442 CC
1 CC
17444 CCATCCCCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
12 25 0.36
13 44 0.63
14 1 0.01
ACGTcount: A:0.23, C:0.59, G:0.00, T:0.18
Consensus pattern (13 bp):
CCATACCCCATCA
Left flanking sequence: Indices 16854 -- 17353
GAGCTACGTGTGGATGTGTTGATAGGTTCCGGTCAACTCCGCTCGCCTGTGGAGAGCCCCACTTG
TTTGGTCTCCTATTGCATTGGGAAGCCTTTGGACGAAATAGGAACCGAAAGCTTAATGTGAAACC
CGCAAAAAAAAACAGTCTGGGAGTGATTGATCTACTAGATGTTTCATTTGAGAAACCTAAGGTTT
GGGAAATTGTCCACCCTTTCGCTTGAGCGTGTGGAGTTGTAGACTCGTTGCGTTTTCTTCCGCTT
AAGAGCCTGTTTGACCCATGTTTCAAAATGGTATCTGCGACGCGTTGCAAAATTTAGTGGGGAAC
GTGGGAATACGAACAAAGCCGGTGTACGAGATGTTGGGGCCGAGAATGTTTCGTGTCAATCTTCC
ACTCGTAGAGTCCTGTCATGAAGCTTCAAAGTACGGAAAGGTGGCCGGCATACCAATCAAAATGT
GGACAAAATCAGGTAACCACACTTTCCACGTGTAGTCTCTTCACC
Right flanking sequence: Indices 17444 -- 17943
CCATCCCCTTGTCTCCCCGGCCCGTAATCCCTACCAATCCCCGGTTTTGAGCCACACTTTTCAGT
GCGGCTCACCCCACCACCACCACGCCCACCATGCCCGTGCTGCTCGATCTCGAGGAGTTGGGCGA
CAGTCTACGCAATGAGGACTATCGCAACGGGCCCGAGATTGCCGCTGACCTTCCCCGGATCCTCC
AGCACCTCGCCGAAACCGTCGACACCGCCCCCATGGCTCTGCTCCGGGTGCTCGTGAACCTCTGT
GCCGACAGTGACGCCAACCGGGACGCTGTGTCGCAACACACGGCGCTCTGGAAGGCGATCGACCC
GCTTTTGGACCCGCTGGAGCCCCTGGAGCCGCCCCAGCGCGTGGGAATCCTCTTGGCCCAGTTCA
TCTACGCAGACCCGCAGCAGTCGCGGGTGTGGGTGCAACGGGTGTACCACGAGCTTCCTCTGGTG
GTCCTGTTTGTGTGGGGCGTCGCTGATCTCGACGATTACGCTCCT
Found at i:17424 original size:39 final size:40
Alignment explanation
Indices: 17347--17425 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
17337 CGTGTAGTCT
* * *
17347 CTTCACCCCATCCCCATCACCATACCCCATCACTCTACCC
1 CTTCACCACATCCCCATCACCACACCCCATCACCCTACCC
* *
17387 CTTCACCACA-CCCCTTCACCACACCCCTTCACCCTACCC
1 CTTCACCACATCCCCATCACCACACCCCATCACCCTACCC
17426 ATCACCCTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 25 0.74
40 9 0.26
ACGTcount: A:0.22, C:0.59, G:0.00, T:0.19
Consensus pattern (40 bp):
CTTCACCACATCCCCATCACCACACCCCATCACCCTACCC
Left flanking sequence: Indices 16847 -- 17346
TGAAGCAGAGCTACGTGTGGATGTGTTGATAGGTTCCGGTCAACTCCGCTCGCCTGTGGAGAGCC
CCACTTGTTTGGTCTCCTATTGCATTGGGAAGCCTTTGGACGAAATAGGAACCGAAAGCTTAATG
TGAAACCCGCAAAAAAAAACAGTCTGGGAGTGATTGATCTACTAGATGTTTCATTTGAGAAACCT
AAGGTTTGGGAAATTGTCCACCCTTTCGCTTGAGCGTGTGGAGTTGTAGACTCGTTGCGTTTTCT
TCCGCTTAAGAGCCTGTTTGACCCATGTTTCAAAATGGTATCTGCGACGCGTTGCAAAATTTAGT
GGGGAACGTGGGAATACGAACAAAGCCGGTGTACGAGATGTTGGGGCCGAGAATGTTTCGTGTCA
ATCTTCCACTCGTAGAGTCCTGTCATGAAGCTTCAAAGTACGGAAAGGTGGCCGGCATACCAATC
AAAATGTGGACAAAATCAGGTAACCACACTTTCCACGTGTAGTCT
Right flanking sequence: Indices 17426 -- 17925
ATCACCCTACCCATCACCCCATCCCCTTGTCTCCCCGGCCCGTAATCCCTACCAATCCCCGGTTT
TGAGCCACACTTTTCAGTGCGGCTCACCCCACCACCACCACGCCCACCATGCCCGTGCTGCTCGA
TCTCGAGGAGTTGGGCGACAGTCTACGCAATGAGGACTATCGCAACGGGCCCGAGATTGCCGCTG
ACCTTCCCCGGATCCTCCAGCACCTCGCCGAAACCGTCGACACCGCCCCCATGGCTCTGCTCCGG
GTGCTCGTGAACCTCTGTGCCGACAGTGACGCCAACCGGGACGCTGTGTCGCAACACACGGCGCT
CTGGAAGGCGATCGACCCGCTTTTGGACCCGCTGGAGCCCCTGGAGCCGCCCCAGCGCGTGGGAA
TCCTCTTGGCCCAGTTCATCTACGCAGACCCGCAGCAGTCGCGGGTGTGGGTGCAACGGGTGTAC
CACGAGCTTCCTCTGGTGGTCCTGTTTGTGTGGGGCGTCGCTGAT
Found at i:17432 original size:12 final size:12
Alignment explanation
Indices: 17415--17444 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
17405 CCACACCCCT
17415 TCACCCTACCCA
1 TCACCCTACCCA
17427 TCACCCTACCCA
1 TCACCCTACCCA
17439 TCACCC
1 TCACCC
17445 CATCCCCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.60, G:0.00, T:0.17
Consensus pattern (12 bp):
TCACCCTACCCA
Left flanking sequence: Indices 16915 -- 17414
CTTGTTTGGTCTCCTATTGCATTGGGAAGCCTTTGGACGAAATAGGAACCGAAAGCTTAATGTGA
AACCCGCAAAAAAAAACAGTCTGGGAGTGATTGATCTACTAGATGTTTCATTTGAGAAACCTAAG
GTTTGGGAAATTGTCCACCCTTTCGCTTGAGCGTGTGGAGTTGTAGACTCGTTGCGTTTTCTTCC
GCTTAAGAGCCTGTTTGACCCATGTTTCAAAATGGTATCTGCGACGCGTTGCAAAATTTAGTGGG
GAACGTGGGAATACGAACAAAGCCGGTGTACGAGATGTTGGGGCCGAGAATGTTTCGTGTCAATC
TTCCACTCGTAGAGTCCTGTCATGAAGCTTCAAAGTACGGAAAGGTGGCCGGCATACCAATCAAA
ATGTGGACAAAATCAGGTAACCACACTTTCCACGTGTAGTCTCTTCACCCCATCCCCATCACCAT
ACCCCATCACTCTACCCCTTCACCACACCCCTTCACCACACCCCT
Right flanking sequence: Indices 17445 -- 17944
CATCCCCTTGTCTCCCCGGCCCGTAATCCCTACCAATCCCCGGTTTTGAGCCACACTTTTCAGTG
CGGCTCACCCCACCACCACCACGCCCACCATGCCCGTGCTGCTCGATCTCGAGGAGTTGGGCGAC
AGTCTACGCAATGAGGACTATCGCAACGGGCCCGAGATTGCCGCTGACCTTCCCCGGATCCTCCA
GCACCTCGCCGAAACCGTCGACACCGCCCCCATGGCTCTGCTCCGGGTGCTCGTGAACCTCTGTG
CCGACAGTGACGCCAACCGGGACGCTGTGTCGCAACACACGGCGCTCTGGAAGGCGATCGACCCG
CTTTTGGACCCGCTGGAGCCCCTGGAGCCGCCCCAGCGCGTGGGAATCCTCTTGGCCCAGTTCAT
CTACGCAGACCCGCAGCAGTCGCGGGTGTGGGTGCAACGGGTGTACCACGAGCTTCCTCTGGTGG
TCCTGTTTGTGTGGGGCGTCGCTGATCTCGACGATTACGCTCCTT
Found at i:19058 original size:18 final size:18
Alignment explanation
Indices: 19034--19102 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
19024 GATGAACGAA
*
19034 ATGGAGATATACGAAGAG
1 ATGGAGATAAACGAAGAG
*
19052 GTGGAGATAAACGAAGAG
1 ATGGAGATAAACGAAGAG
* *
19070 ATGGAAATAAACGAAGAA
1 ATGGAGATAAACGAAGAG
* *
19088 ATAGAGTTAAACGAA
1 ATGGAGATAAACGAA
19103 ATAAGCCGTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.51, C:0.06, G:0.29, T:0.14
Consensus pattern (18 bp):
ATGGAGATAAACGAAGAG
Left flanking sequence: Indices 18534 -- 19033
CTACCCCGAGATCCTGGGCCTCGTGTCCAAGTTCTTGCGCAAATTGATCCGGGTGGGTGGTGCTG
ACGCGGCCCGCGAGCTTGTGGCGGTGGTGGACGACCGCCACACCAAGTTGGCGCTTCTCGAGCAG
GCGATAGCCCACGGGGGCCCGCTAGACTCTGCGCTCGTGGCTGACTGCTTCACGCTCGAGCCCTC
GGAGACCAAGGTCGAGCTTCTCATGGAGCAGGTCAAGGTGGCGGGGATGCTCGTGCACAAGGCTG
GGGCCAGTCTTCCCCAGGAGACCTTGCCCGGGCTCGAGCTGTTTCTTACTGCTCTCTACGAGTTT
TTGCCGCTGGCCCGCGACCAGCCGGTGTACCCGGCGATTTTGAACAACAGCAAGTTTTTGGCGGC
CGCGGTGGCCCTGGTGCCGGGGATCTCGCTGACATTGGACCTGTTGTGTCTTGAGGTGGTGAAAA
TGGAGTAGATAACGAAGAAGTGGAGTACGAAGAAAGATGAACGAA
Right flanking sequence: Indices 19103 -- 19602
ATAAGCCGTAGGATAGGAATCGGATGATTTTCGATACGCGTGGGAGTCCCCGTTCTCATTTGAAC
GTCCCTTGTTGAAAAACGTTACCAGCCAGTGGGTCAATTTCCTGCTCGGCAGGTGGGCTAGCCTT
GGTCGTCGTAGCAGTAATTCTAATCTTTGCATCACCGCTAGACACCCAGTCAGCGTGATAGTAGG
GAAGACGTGCTATGTCCCTAGTAAAAGTGGCCTGTCTCAGCTGGGGGGCCGCAAGCGGCGCCCCC
GAGACCCCCCAACGCTTATTTGCGTCAAATGGCTGCTACAATTCTATTTCGTGGAGGTTGCAAAC
GTCACTATCATACTAATAGCATAAGAACTGTTGAAATTTTACCAGCCGGTGGGTTGGTTTTCTGC
TCTGTAGGTGGGCTAGCCTTAAGCAGAGGGTCAGTTATAGTAGTAATCTGTATCTGCACACTTAT
CAATGGATAGTCTAAAATACAAGCTATTCGCCTGATCAATAAACT
Found at i:21859 original size:45 final size:44
Alignment explanation
Indices: 21805--21905 Score: 175
Period size: 45 Copynumber: 2.3 Consensus size: 44
21795 ATCCGAAGAA
*
21805 AAAAAATCCGAAGAGTCCAAATTCCGAAATGACCGTGTAGTCCG
1 AAAAAATCCGAAGAGTCCAAATTCCAAAATGACCGTGTAGTCCG
21849 AAAAAGATCCGAAGAGTCCAAATTCCAAAATGACCGTGTAGTCCG
1 AAAAA-ATCCGAAGAGTCCAAATTCCAAAATGACCGTGTAGTCCG
*
21894 AAAGAATCCGAA
1 AAAAAATCCGAA
21906 AAAATCCGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
44 12 0.22
45 42 0.78
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.17
Consensus pattern (44 bp):
AAAAAATCCGAAGAGTCCAAATTCCAAAATGACCGTGTAGTCCG
Left flanking sequence: Indices 21305 -- 21804
CTCCAAGAACCTCGGGTTGTACGGCGAGCGCGTCGGGTGCTTGCACGTGGTGGCCGCCTCCGAGC
AGGCGGCCCAGGCGGTGGAGCTGAACCTCGTGGCCAACTTCCGGGCCGAGTGCCTGTTTGCGCCC
GCGTGGGGTGCGTACGTGGCCGCCACCGTGTTTGGCGACGCCTCGTTGGTGCGCCAGTGGCACCA
GGACGTCGCGGCCATCACTGCACGGCTTAAGGGGGTGCGTCAAACGGTTCATGCAAAGTTGACAG
CCCTCGGGACCCCTGGTGCATGGAGCCACATCACCCTGCAGAACGGGTTGTTCTGGCACCTGGGC
CTCACCGAGCCCCAGGTGCGGCGGTTGATGGACAAGCACCACGTGTACGCCACGTTCCTGGGCCG
GGTCAACGTGGCCGGGTTGAACGACGCCAACATCGACCGGTTCTGTGCCGCGGTCGACGAGGTGT
CTCGTAACGCTTAGATATACGAGTAGTCCGAAAGAATCCGAAGAA
Right flanking sequence: Indices 21906 -- 22405
AAAATCCGAAAAGAATCCGAAGAAAATCCTAAATGAGTCCCATATTCCGAAATGACCGTGTATGA
ACTTCCTATAAATATAACCGGTAGAAAAATGAGGGGGTCGCTCGCGCTAGACGTAGGGAGACGGA
CCCCGGAGGACCTACAAGTCCTTGCGATGGTGGATCTTTTTCAAGTGGGCCTTCAAGTTGTCCTT
GCGGTTGAACCGCTTGCCGCAGTTGGGCTCCTCGCACTGGAACGGCTTCTCCAGCAGGTGCAGCT
TCAAGTGCCGCTTGACGTGCTCGGGCCGCTGGAACCGCAGGTCGCAGATGGGGCACTTGTGCTTC
TTTTTCGGGTCCACCTGCTCCAGCTTGTCCAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCT
GAAGTCGGGCGCCATGAGCGCCAGCGCCACCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTG
CCACTGCCAGCTTCAGCTTTTTGAGCGATGGGGCCAGCGTCAGCC
Found at i:21920 original size:21 final size:21
Alignment explanation
Indices: 21890--21934 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
21880 GACCGTGTAG
21890 TCCGAAAGAATCCGAA-AAAA
1 TCCGAAAGAATCCGAAGAAAA
21910 TCCGAAAAGAATCCGAAGAAAA
1 TCCG-AAAGAATCCGAAGAAAA
21932 TCC
1 TCC
21935 TAAATGAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 4 0.17
21 12 0.52
22 7 0.30
ACGTcount: A:0.51, C:0.22, G:0.16, T:0.11
Consensus pattern (21 bp):
TCCGAAAGAATCCGAAGAAAA
Left flanking sequence: Indices 21390 -- 21889
CTGAACCTCGTGGCCAACTTCCGGGCCGAGTGCCTGTTTGCGCCCGCGTGGGGTGCGTACGTGGC
CGCCACCGTGTTTGGCGACGCCTCGTTGGTGCGCCAGTGGCACCAGGACGTCGCGGCCATCACTG
CACGGCTTAAGGGGGTGCGTCAAACGGTTCATGCAAAGTTGACAGCCCTCGGGACCCCTGGTGCA
TGGAGCCACATCACCCTGCAGAACGGGTTGTTCTGGCACCTGGGCCTCACCGAGCCCCAGGTGCG
GCGGTTGATGGACAAGCACCACGTGTACGCCACGTTCCTGGGCCGGGTCAACGTGGCCGGGTTGA
ACGACGCCAACATCGACCGGTTCTGTGCCGCGGTCGACGAGGTGTCTCGTAACGCTTAGATATAC
GAGTAGTCCGAAAGAATCCGAAGAAAAAAAATCCGAAGAGTCCAAATTCCGAAATGACCGTGTAG
TCCGAAAAAGATCCGAAGAGTCCAAATTCCAAAATGACCGTGTAG
Right flanking sequence: Indices 21935 -- 22434
TAAATGAGTCCCATATTCCGAAATGACCGTGTATGAACTTCCTATAAATATAACCGGTAGAAAAA
TGAGGGGGTCGCTCGCGCTAGACGTAGGGAGACGGACCCCGGAGGACCTACAAGTCCTTGCGATG
GTGGATCTTTTTCAAGTGGGCCTTCAAGTTGTCCTTGCGGTTGAACCGCTTGCCGCAGTTGGGCT
CCTCGCACTGGAACGGCTTCTCCAGCAGGTGCAGCTTCAAGTGCCGCTTGACGTGCTCGGGCCGC
TGGAACCGCAGGTCGCAGATGGGGCACTTGTGCTTCTTTTTCGGGTCCACCTGCTCCAGCTTGTC
CAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCTGAAGTCGGGCGCCATGAGCGCCAGCGCCA
CCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTGCCACTGCCAGCTTCAGCTTTTTGAGCGAT
GGGGCCAGCGTCAGCCCGTGTCGTGATGCCAACAGCGACACCACC
Found at i:21933 original size:11 final size:10
Alignment explanation
Indices: 21890--21934 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
21880 GACCGTGTAG
*
21890 TCCGAAAGAA
1 TCCGAAAAAA
21900 TCCGAAAAAA
1 TCCGAAAAAA
21910 TCCGAAAAGAA
1 TCCGAAAA-AA
21921 TCCGAAGAAAA
1 TCCGAA-AAAA
21932 TCC
1 TCC
21935 TAAATGAGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 17 0.53
11 13 0.41
12 2 0.06
ACGTcount: A:0.51, C:0.22, G:0.16, T:0.11
Consensus pattern (10 bp):
TCCGAAAAAA
Left flanking sequence: Indices 21390 -- 21889
CTGAACCTCGTGGCCAACTTCCGGGCCGAGTGCCTGTTTGCGCCCGCGTGGGGTGCGTACGTGGC
CGCCACCGTGTTTGGCGACGCCTCGTTGGTGCGCCAGTGGCACCAGGACGTCGCGGCCATCACTG
CACGGCTTAAGGGGGTGCGTCAAACGGTTCATGCAAAGTTGACAGCCCTCGGGACCCCTGGTGCA
TGGAGCCACATCACCCTGCAGAACGGGTTGTTCTGGCACCTGGGCCTCACCGAGCCCCAGGTGCG
GCGGTTGATGGACAAGCACCACGTGTACGCCACGTTCCTGGGCCGGGTCAACGTGGCCGGGTTGA
ACGACGCCAACATCGACCGGTTCTGTGCCGCGGTCGACGAGGTGTCTCGTAACGCTTAGATATAC
GAGTAGTCCGAAAGAATCCGAAGAAAAAAAATCCGAAGAGTCCAAATTCCGAAATGACCGTGTAG
TCCGAAAAAGATCCGAAGAGTCCAAATTCCAAAATGACCGTGTAG
Right flanking sequence: Indices 21935 -- 22434
TAAATGAGTCCCATATTCCGAAATGACCGTGTATGAACTTCCTATAAATATAACCGGTAGAAAAA
TGAGGGGGTCGCTCGCGCTAGACGTAGGGAGACGGACCCCGGAGGACCTACAAGTCCTTGCGATG
GTGGATCTTTTTCAAGTGGGCCTTCAAGTTGTCCTTGCGGTTGAACCGCTTGCCGCAGTTGGGCT
CCTCGCACTGGAACGGCTTCTCCAGCAGGTGCAGCTTCAAGTGCCGCTTGACGTGCTCGGGCCGC
TGGAACCGCAGGTCGCAGATGGGGCACTTGTGCTTCTTTTTCGGGTCCACCTGCTCCAGCTTGTC
CAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCTGAAGTCGGGCGCCATGAGCGCCAGCGCCA
CCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTGCCACTGCCAGCTTCAGCTTTTTGAGCGAT
GGGGCCAGCGTCAGCCCGTGTCGTGATGCCAACAGCGACACCACC
Found at i:22751 original size:21 final size:21
Alignment explanation
Indices: 22727--22788 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
22717 GGTGCGGAGT
*
22727 TCTGCACTAGCGGCCCGGTGC
1 TCTGCACAAGCGGCCCGGTGC
*
22748 TCTGCACAAGCAGCCCGGTG-
1 TCTGCACAAGCGGCCCGGTGC
22768 -CT-CACAAGCGGCCCGGTGC
1 TCTGCACAAGCGGCCCGGTGC
22787 TC
1 TC
22789 ACACCTTGGC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 15 0.42
19 2 0.06
20 1 0.03
21 18 0.50
ACGTcount: A:0.15, C:0.39, G:0.31, T:0.16
Consensus pattern (21 bp):
TCTGCACAAGCGGCCCGGTGC
Left flanking sequence: Indices 22227 -- 22726
CTTCTTTTTCGGGTCCACCTGCTCCAGCTTGTCCAGCCGGTTCAGCTTGACCACGGGGATGTCCA
CGCTGAAGTCGGGCGCCATGAGCGCCAGCGCCACCAGCTTGGGCATGTCGGTGGTGTCCATGGCG
AGTGCCACTGCCAGCTTCAGCTTTTTGAGCGATGGGGCCAGCGTCAGCCCGTGTCGTGATGCCAA
CAGCGACACCACCAGCGGGGTCAGGCCCTGGCGCAGCAGCCCCAGCCGCGAGCGCGCGGTCAACG
GGGCCATCGCCCCGAGCTCGTCGGGAGCCTCCGGGTAGGCGTCCTGGTACACCTGGTGGTAGCGT
TGGTACCCGGGCTCATACCCCAGGGGAGCGAACCCCAGCGCCAACTGCTGGCGCGGGTAGGGCTC
GGGGCCGAAGTTGGGCGGCGTCACCTCGCGGAGGTACTGGCGCTGCTCCTCGTACTCCTGGATGG
GGGGGAACGCCTCGTACTGGGCGCCCGAGCCCGCGGGTGCGGAGT
Right flanking sequence: Indices 22789 -- 23288
ACACCTTGGCCACCCAGAGCCATTCCAGACGCCATTGCCAGGCCAGCGGTCCCGTTCAAGCTCTG
GTTGCTGCCCGGCACCACAAACTGGCCGCCGTAGGGCGCGCCCAGAGGCCCCAGCGCCGCCTGGT
GCAACGACGAGAAGCTCAGGCTCATCAGCAGCGCCAGCGAGTTGGCGGTGCTAAAGGTGGCCATG
GGCGGCAAGAGCTCGGTCAACTCGCCGTCGCCCTCGAACTCAAACTGCCCGAGAAGGTCCACCGG
CGGCTTGCGAGCCCGCGCAGCCTGCTGCTGGTGCGCGGCCTGCTGCTGGGCATGTGCCATCACCT
GGTGGTGCACCTGGGACGCCTGGTCGAAGTGGATGGGCGAGTTGTCGGCAAAGAACCCGGGGGTC
AGCACTGCCAGGAAGTCGTCGGGCTGGTGTACCACCTGGGGCCGTGCCTTGGTGAACAGCGAGTA
CGACTTGGCCTTTTTGAGCTGTTTGAACGCGTCGTCGTCCTGGTC
Found at i:22775 original size:18 final size:18
Alignment explanation
Indices: 22752--22791 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
22742 CGGTGCTCTG
22752 CACAAGCAGCCCGGTGCT
1 CACAAGCAGCCCGGTGCT
*
22770 CACAAGCGGCCCGGTGCT
1 CACAAGCAGCCCGGTGCT
22788 CACA
1 CACA
22792 CCTTGGCCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.40, G:0.28, T:0.10
Consensus pattern (18 bp):
CACAAGCAGCCCGGTGCT
Left flanking sequence: Indices 22252 -- 22751
AGCTTGTCCAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCTGAAGTCGGGCGCCATGAGCGC
CAGCGCCACCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTGCCACTGCCAGCTTCAGCTTTT
TGAGCGATGGGGCCAGCGTCAGCCCGTGTCGTGATGCCAACAGCGACACCACCAGCGGGGTCAGG
CCCTGGCGCAGCAGCCCCAGCCGCGAGCGCGCGGTCAACGGGGCCATCGCCCCGAGCTCGTCGGG
AGCCTCCGGGTAGGCGTCCTGGTACACCTGGTGGTAGCGTTGGTACCCGGGCTCATACCCCAGGG
GAGCGAACCCCAGCGCCAACTGCTGGCGCGGGTAGGGCTCGGGGCCGAAGTTGGGCGGCGTCACC
TCGCGGAGGTACTGGCGCTGCTCCTCGTACTCCTGGATGGGGGGGAACGCCTCGTACTGGGCGCC
CGAGCCCGCGGGTGCGGAGTTCTGCACTAGCGGCCCGGTGCTCTG
Right flanking sequence: Indices 22792 -- 23291
CCTTGGCCACCCAGAGCCATTCCAGACGCCATTGCCAGGCCAGCGGTCCCGTTCAAGCTCTGGTT
GCTGCCCGGCACCACAAACTGGCCGCCGTAGGGCGCGCCCAGAGGCCCCAGCGCCGCCTGGTGCA
ACGACGAGAAGCTCAGGCTCATCAGCAGCGCCAGCGAGTTGGCGGTGCTAAAGGTGGCCATGGGC
GGCAAGAGCTCGGTCAACTCGCCGTCGCCCTCGAACTCAAACTGCCCGAGAAGGTCCACCGGCGG
CTTGCGAGCCCGCGCAGCCTGCTGCTGGTGCGCGGCCTGCTGCTGGGCATGTGCCATCACCTGGT
GGTGCACCTGGGACGCCTGGTCGAAGTGGATGGGCGAGTTGTCGGCAAAGAACCCGGGGGTCAGC
ACTGCCAGGAAGTCGTCGGGCTGGTGTACCACCTGGGGCCGTGCCTTGGTGAACAGCGAGTACGA
CTTGGCCTTTTTGAGCTGTTTGAACGCGTCGTCGTCCTGGTCCTC
Found at i:23089 original size:18 final size:18
Alignment explanation
Indices: 23063--23097 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23053 TTGCGAGCCC
23063 GCGCAGCCTGCTGCTGGT
1 GCGCAGCCTGCTGCTGGT
*
23081 GCGCGGCCTGCTGCTGG
1 GCGCAGCCTGCTGCTGG
23098 GCATGTGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.34, G:0.43, T:0.20
Consensus pattern (18 bp):
GCGCAGCCTGCTGCTGGT
Left flanking sequence: Indices 22563 -- 23062
CTCATACCCCAGGGGAGCGAACCCCAGCGCCAACTGCTGGCGCGGGTAGGGCTCGGGGCCGAAGT
TGGGCGGCGTCACCTCGCGGAGGTACTGGCGCTGCTCCTCGTACTCCTGGATGGGGGGGAACGCC
TCGTACTGGGCGCCCGAGCCCGCGGGTGCGGAGTTCTGCACTAGCGGCCCGGTGCTCTGCACAAG
CAGCCCGGTGCTCACAAGCGGCCCGGTGCTCACACCTTGGCCACCCAGAGCCATTCCAGACGCCA
TTGCCAGGCCAGCGGTCCCGTTCAAGCTCTGGTTGCTGCCCGGCACCACAAACTGGCCGCCGTAG
GGCGCGCCCAGAGGCCCCAGCGCCGCCTGGTGCAACGACGAGAAGCTCAGGCTCATCAGCAGCGC
CAGCGAGTTGGCGGTGCTAAAGGTGGCCATGGGCGGCAAGAGCTCGGTCAACTCGCCGTCGCCCT
CGAACTCAAACTGCCCGAGAAGGTCCACCGGCGGCTTGCGAGCCC
Right flanking sequence: Indices 23098 -- 23597
GCATGTGCCATCACCTGGTGGTGCACCTGGGACGCCTGGTCGAAGTGGATGGGCGAGTTGTCGGC
AAAGAACCCGGGGGTCAGCACTGCCAGGAAGTCGTCGGGCTGGTGTACCACCTGGGGCCGTGCCT
TGGTGAACAGCGAGTACGACTTGGCCTTTTTGAGCTGTTTGAACGCGTCGTCGTCCTGGTCCTCG
ATCTTGATCAGCTCAAGCGTGTCGGCTCGGTTCAACGCGTAGGGCGTGGTCTTGGCCAGGAACGC
CAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGGGAGCGGGGTGACGTCGTCGTAGCCTG
CGGGCGCCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCACCAGCGGCATCAACGGGGTGGTGATG
GTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGCTGGTGGTGCGGTTGCTTGGTGACCTT
GGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGTGGCGGT
Found at i:23865 original size:12 final size:12
Alignment explanation
Indices: 23845--23969 Score: 94
Period size: 12 Copynumber: 9.7 Consensus size: 12
23835 CAGGTGGCTG
*
23845 TGGGAGCCGTGC
1 TGGGTGCCGTGC
23857 TGGGTGCCGTGC
1 TGGGTGCCGTGC
23869 TGGGTGCC--G-
1 TGGGTGCCGTGC
*
23878 TGGGAGCCGTGC
1 TGGGTGCCGTGC
23890 TGGGTGCCGTGC
1 TGGGTGCCGTGC
*
23902 TGGGTGCCCAGGTGGT
1 TGGGTG-CC--GT-GC
23918 TGTGGTGGCCGTGC
1 TG-GGT-GCCGTGC
23932 TGGGTGGCCAGGTGGC
1 TGGGT-GCC--GT-GC
23948 TGTGGTGGCCGTGC
1 TG-GGT-GCCGTGC
23962 TGGGTGCC
1 TGGGTGCC
23970 CAGCAGGCTG
Statistics
Matches: 95, Mismatches: 5, Indels: 26
0.75 0.04 0.21
Matches are distributed among these distances:
9 7 0.07
10 1 0.01
11 1 0.01
12 39 0.41
13 12 0.13
14 7 0.07
15 8 0.08
16 7 0.07
17 12 0.13
18 1 0.01
ACGTcount: A:0.03, C:0.22, G:0.51, T:0.23
Consensus pattern (12 bp):
TGGGTGCCGTGC
Left flanking sequence: Indices 23345 -- 23844
TGGCCAGGAACGCCAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGGGAGCGGGGTGACG
TCGTCGTAGCCTGCGGGCGCCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCACCAGCGGCATCAA
CGGGGTGGTGATGGTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGCTGGTGGTGCGGTT
GCTTGGTGACCTTGGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGTGGCGGTCGGGGTC
TGGGTCTGGTGCGACAGCACCAGCTTGCGCTGGGGTCTTCTGGGTGTCACCAGCGGTTGCGACGG
GGCTGGTTCCAACAGCAGGAACAGCGTGTTGAGCAGCAGGGCCGGGGTGGCCTGTTCCAAGTCCA
TGTGGTCCGGGTGCGACGGTGCGCCCGGGTGCTGTGCCGGTGCACCGGGCACCGGGGCAGGGAGG
TGGGCCTGGTAGTAGGGGTAGTTGGCGGGGGGGCCCAGGTGGCTG
Right flanking sequence: Indices 23970 -- 24469
CAGCAGGCTGGTGTGGTACTGCGACGGGAACGGCTCCATGTGCAGCGGGGCCTCCATGAGGTGCT
GCGGGGCCAGCGCTAGCACCTGGGGGCCCATGTGGACCATCAGTGCGTCCGGGTGCAGGTCGGCA
AACAGGGCAAACAGAGTGTCGTCGGTGGGAAAGAGATCGAAGTCAAGGTCGTCCCCGTCGAAACG
GAGGGTGGGCGAACTCATCCGCGCAAGACCGGGCGAGCTAGGGGTTTGCAGGGAGCGACCGGGCC
TGGACAGAGGGGCAATGCACGGGGGTACGGGGCGCGAGAGGTGCGGAGGTGCCAACGAGGTGCTG
TTTCACAAACAGGACGTGCGGTGCCAGACGGGGGCTGATCAACGGTGGTGAAAAACTGGGTTGTG
CACAGGTTGGTGGAGAAAAAAATATGAGTTGTGTTCAGGAAAGTGCCGGACGGGGACAAAGCTGG
CGGCACAGCGCCGGTGGAAGCGGTGGGGTGGGGGCTACAGTGCTC
Found at i:23886 original size:21 final size:21
Alignment explanation
Indices: 23857--23900 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
23847 GGAGCCGTGC
*
23857 TGGGTGCCGTGCTGGGTGCCG
1 TGGGAGCCGTGCTGGGTGCCG
23878 TGGGAGCCGTGCTGGGTGCCG
1 TGGGAGCCGTGCTGGGTGCCG
23899 TG
1 TG
23901 CTGGGTGCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.23, G:0.52, T:0.23
Consensus pattern (21 bp):
TGGGAGCCGTGCTGGGTGCCG
Left flanking sequence: Indices 23357 -- 23856
CCAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGGGAGCGGGGTGACGTCGTCGTAGCCT
GCGGGCGCCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCACCAGCGGCATCAACGGGGTGGTGAT
GGTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGCTGGTGGTGCGGTTGCTTGGTGACCT
TGGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGTGGCGGTCGGGGTCTGGGTCTGGTGC
GACAGCACCAGCTTGCGCTGGGGTCTTCTGGGTGTCACCAGCGGTTGCGACGGGGCTGGTTCCAA
CAGCAGGAACAGCGTGTTGAGCAGCAGGGCCGGGGTGGCCTGTTCCAAGTCCATGTGGTCCGGGT
GCGACGGTGCGCCCGGGTGCTGTGCCGGTGCACCGGGCACCGGGGCAGGGAGGTGGGCCTGGTAG
TAGGGGTAGTTGGCGGGGGGGCCCAGGTGGCTGTGGGAGCCGTGC
Right flanking sequence: Indices 23901 -- 24400
CTGGGTGCCCAGGTGGTTGTGGTGGCCGTGCTGGGTGGCCAGGTGGCTGTGGTGGCCGTGCTGGG
TGCCCAGCAGGCTGGTGTGGTACTGCGACGGGAACGGCTCCATGTGCAGCGGGGCCTCCATGAGG
TGCTGCGGGGCCAGCGCTAGCACCTGGGGGCCCATGTGGACCATCAGTGCGTCCGGGTGCAGGTC
GGCAAACAGGGCAAACAGAGTGTCGTCGGTGGGAAAGAGATCGAAGTCAAGGTCGTCCCCGTCGA
AACGGAGGGTGGGCGAACTCATCCGCGCAAGACCGGGCGAGCTAGGGGTTTGCAGGGAGCGACCG
GGCCTGGACAGAGGGGCAATGCACGGGGGTACGGGGCGCGAGAGGTGCGGAGGTGCCAACGAGGT
GCTGTTTCACAAACAGGACGTGCGGTGCCAGACGGGGGCTGATCAACGGTGGTGAAAAACTGGGT
TGTGCACAGGTTGGTGGAGAAAAAAATATGAGTTGTGTTCAGGAA
Found at i:23886 original size:33 final size:33
Alignment explanation
Indices: 23844--23909 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
23834 CCAGGTGGCT
23844 GTGGGAGCCGTGCTGGGTGCCGTGCTGGGTGCC
1 GTGGGAGCCGTGCTGGGTGCCGTGCTGGGTGCC
23877 GTGGGAGCCGTGCTGGGTGCCGTGCTGGGTGCC
1 GTGGGAGCCGTGCTGGGTGCCGTGCTGGGTGCC
23910 CAGGTGGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.03, C:0.24, G:0.52, T:0.21
Consensus pattern (33 bp):
GTGGGAGCCGTGCTGGGTGCCGTGCTGGGTGCC
Left flanking sequence: Indices 23344 -- 23843
TTGGCCAGGAACGCCAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGGGAGCGGGGTGAC
GTCGTCGTAGCCTGCGGGCGCCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCACCAGCGGCATCA
ACGGGGTGGTGATGGTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGCTGGTGGTGCGGT
TGCTTGGTGACCTTGGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGTGGCGGTCGGGGT
CTGGGTCTGGTGCGACAGCACCAGCTTGCGCTGGGGTCTTCTGGGTGTCACCAGCGGTTGCGACG
GGGCTGGTTCCAACAGCAGGAACAGCGTGTTGAGCAGCAGGGCCGGGGTGGCCTGTTCCAAGTCC
ATGTGGTCCGGGTGCGACGGTGCGCCCGGGTGCTGTGCCGGTGCACCGGGCACCGGGGCAGGGAG
GTGGGCCTGGTAGTAGGGGTAGTTGGCGGGGGGGCCCAGGTGGCT
Right flanking sequence: Indices 23910 -- 24409
CAGGTGGTTGTGGTGGCCGTGCTGGGTGGCCAGGTGGCTGTGGTGGCCGTGCTGGGTGCCCAGCA
GGCTGGTGTGGTACTGCGACGGGAACGGCTCCATGTGCAGCGGGGCCTCCATGAGGTGCTGCGGG
GCCAGCGCTAGCACCTGGGGGCCCATGTGGACCATCAGTGCGTCCGGGTGCAGGTCGGCAAACAG
GGCAAACAGAGTGTCGTCGGTGGGAAAGAGATCGAAGTCAAGGTCGTCCCCGTCGAAACGGAGGG
TGGGCGAACTCATCCGCGCAAGACCGGGCGAGCTAGGGGTTTGCAGGGAGCGACCGGGCCTGGAC
AGAGGGGCAATGCACGGGGGTACGGGGCGCGAGAGGTGCGGAGGTGCCAACGAGGTGCTGTTTCA
CAAACAGGACGTGCGGTGCCAGACGGGGGCTGATCAACGGTGGTGAAAAACTGGGTTGTGCACAG
GTTGGTGGAGAAAAAAATATGAGTTGTGTTCAGGAAAGTGCCGGA
Found at i:23979 original size:30 final size:30
Alignment explanation
Indices: 23888--23972 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
23878 TGGGAGCCGT
23888 GCTG-GGT-GCCGTGCTGGGTGCCCAGGTG
1 GCTGTGGTGGCCGTGCTGGGTGCCCAGGTG
* *
23916 GTTGTGGTGGCCGTGCTGGGTGGCCAGGTG
1 GCTGTGGTGGCCGTGCTGGGTGCCCAGGTG
23946 GCTGTGGTGGCCGTGCTGGGTGCCCAG
1 GCTGTGGTGGCCGTGCTGGGTGCCCAG
23973 CAGGCTGGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.06
29 3 0.06
30 45 0.88
ACGTcount: A:0.04, C:0.22, G:0.51, T:0.24
Consensus pattern (30 bp):
GCTGTGGTGGCCGTGCTGGGTGCCCAGGTG
Left flanking sequence: Indices 23388 -- 23887
GGGCGTCGGGAGCGGGGTGACGTCGTCGTAGCCTGCGGGCGCCGTCAGGGCCAGGCCCAGCGGCG
AGAACGGCACCAGCGGCATCAACGGGGTGGTGATGGTGGTGTTGAGGTCCACCAGGATCCGCAGC
CGCAGCCGCTGGTGGTGCGGTTGCTTGGTGACCTTGGCAGCGTTGGCCAAGTTGACGGGCAGCAC
CCGCATGGTGGCGGTCGGGGTCTGGGTCTGGTGCGACAGCACCAGCTTGCGCTGGGGTCTTCTGG
GTGTCACCAGCGGTTGCGACGGGGCTGGTTCCAACAGCAGGAACAGCGTGTTGAGCAGCAGGGCC
GGGGTGGCCTGTTCCAAGTCCATGTGGTCCGGGTGCGACGGTGCGCCCGGGTGCTGTGCCGGTGC
ACCGGGCACCGGGGCAGGGAGGTGGGCCTGGTAGTAGGGGTAGTTGGCGGGGGGGCCCAGGTGGC
TGTGGGAGCCGTGCTGGGTGCCGTGCTGGGTGCCGTGGGAGCCGT
Right flanking sequence: Indices 23973 -- 24472
CAGGCTGGTGTGGTACTGCGACGGGAACGGCTCCATGTGCAGCGGGGCCTCCATGAGGTGCTGCG
GGGCCAGCGCTAGCACCTGGGGGCCCATGTGGACCATCAGTGCGTCCGGGTGCAGGTCGGCAAAC
AGGGCAAACAGAGTGTCGTCGGTGGGAAAGAGATCGAAGTCAAGGTCGTCCCCGTCGAAACGGAG
GGTGGGCGAACTCATCCGCGCAAGACCGGGCGAGCTAGGGGTTTGCAGGGAGCGACCGGGCCTGG
ACAGAGGGGCAATGCACGGGGGTACGGGGCGCGAGAGGTGCGGAGGTGCCAACGAGGTGCTGTTT
CACAAACAGGACGTGCGGTGCCAGACGGGGGCTGATCAACGGTGGTGAAAAACTGGGTTGTGCAC
AGGTTGGTGGAGAAAAAAATATGAGTTGTGTTCAGGAAAGTGCCGGACGGGGACAAAGCTGGCGG
CACAGCGCCGGTGGAAGCGGTGGGGTGGGGGCTACAGTGCTCTAC
Found at i:25980 original size:18 final size:18
Alignment explanation
Indices: 25953--26007 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
25943 GTGAGAGCAG
*
25953 GTGGAGGAGAGGTGGTGT
1 GTGGACGAGAGGTGGTGT
25971 GTGGACGAGAGGTGG-GT
1 GTGGACGAGAGGTGGTGT
* *
25988 GGGGGACGAGAGGTGTTGT
1 -GTGGACGAGAGGTGGTGT
26007 G
1 G
26008 GTGTAGTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.16, C:0.04, G:0.60, T:0.20
Consensus pattern (18 bp):
GTGGACGAGAGGTGGTGT
Left flanking sequence: Indices 25453 -- 25952
TTGTTCATTGGCAAGCGGCCCGCGGTGGTTGCGCCAGCCCAAGCCTCGACGCTAAACCCCGGCCC
ACGGATCACGGTGGTAACCCCGCGTAACTCCGGAGGACACCCGCTCCACGCGAGCCCGACAATGG
TGGGGGCCCCCCGTTACGAGCGTGGGGGGTCCTTGGGGACGGATCAGGAAAGAGTTCCCCCGTAG
ATCGACGATAGAACCTGGGGTTGCCGAGGATGTCGCCCCATCGGGCGAGAGATAGCGCGATGTGC
GAGAGACACGGAGCGGGAGACACCTGGCCGACACGCGTTTGTACAATGGGTGAGAGGGAGCCGTG
GGGTTTGTGTGCGGATGGTGCGGGCGGTGTGCGGGTGGTGTGCGGTGGAGTGCGGTGCGTGGGTC
AACGGCAGTTTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTGTGGTGGTATTGCCTAATGG
GGTTTAAGTGGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAG
Right flanking sequence: Indices 26008 -- 26507
GTGTAGTGGTGATGTAGTGGTGGTCTAGTTGTGTAGTGGTCTAGTGGTTAGGGGTCTAGTGGTCT
AGTGGTCTAGTGGTCTAGTGAGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGTG
GAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGCT
GGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGT
TCTTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAA
AGGCTTGGGACAATGGCCTCAGCCTGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAAT
GGCCTCAGCGTGGCTTTCTACGAACAATGGTGGCTTGGTTGTCGTCTGAGGAGCTGGTTGACACG
ACCGTCGAGTCGAGCTGGGATAGCCATTCGCGACCGAGTCGAGCT
Found at i:26016 original size:8 final size:8
Alignment explanation
Indices: 25999--26111 Score: 74
Period size: 8 Copynumber: 14.5 Consensus size: 8
25989 GGGGACGAGA
*
25999 GGTGTTGT
1 GGTGTAGT
26007 GGTGTAGT
1 GGTGTAGT
26015 GGTG-A-T
1 GGTGTAGT
*
26021 -GTAGTGGT
1 GGT-GTAGT
*
26029 GGTCTAGT
1 GGTGTAGT
*
26037 TGTGTAGT
1 GGTGTAGT
*
26045 GGTCTAGT
1 GGTGTAGT
*
26053 GGT-TAGG
1 GGTGTAGT
*
26060 GGTCTAGT
1 GGTGTAGT
*
26068 GGTCTAGT
1 GGTGTAGT
*
26076 GGTCTAGT
1 GGTGTAGT
*
26084 GGTCTAGT
1 GGTGTAGT
*
26092 GAGTGTA-A
1 G-GTGTAGT
26100 GGTGTAGT
1 GGTGTAGT
26108 GGTG
1 GGTG
26112 GTGTGTGGTG
Statistics
Matches: 85, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 12 0.14
8 63 0.74
9 6 0.07
ACGTcount: A:0.13, C:0.05, G:0.44, T:0.37
Consensus pattern (8 bp):
GGTGTAGT
Left flanking sequence: Indices 25499 -- 25998
CGACGCTAAACCCCGGCCCACGGATCACGGTGGTAACCCCGCGTAACTCCGGAGGACACCCGCTC
CACGCGAGCCCGACAATGGTGGGGGCCCCCCGTTACGAGCGTGGGGGGTCCTTGGGGACGGATCA
GGAAAGAGTTCCCCCGTAGATCGACGATAGAACCTGGGGTTGCCGAGGATGTCGCCCCATCGGGC
GAGAGATAGCGCGATGTGCGAGAGACACGGAGCGGGAGACACCTGGCCGACACGCGTTTGTACAA
TGGGTGAGAGGGAGCCGTGGGGTTTGTGTGCGGATGGTGCGGGCGGTGTGCGGGTGGTGTGCGGT
GGAGTGCGGTGCGTGGGTCAACGGCAGTTTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTG
TGGTGGTATTGCCTAATGGGGTTTAAGTGGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAGG
TGGAGGAGAGGTGGTGTGTGGACGAGAGGTGGGTGGGGGACGAGA
Right flanking sequence: Indices 26112 -- 26611
GTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACT
GATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTC
CTATTGTGTTCTCGGACACCTATTGTTCTTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGC
CTGTGAAGATGGCTGATGCGACAGAAAGGCTTGGGACAATGGCCTCAGCCTGGCCTCAGCCTGGC
CTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAGCGTGGCTTTCTACGAACAATGGTGGCTTGGT
TGTCGTCTGAGGAGCTGGTTGACACGACCGTCGAGTCGAGCTGGGATAGCCATTCGCGACCGAGT
CGAGCTAAGATAGCGCCATTGCGACCGTATTTAGTCGAATTAGCTCGTGTCTCGAGTCAAAGGAC
TCGTTTCCACCTGCTGGGCTCTCCACCTGCTGGCTCTCCACCTGC
Found at i:26048 original size:16 final size:15
Alignment explanation
Indices: 26027--26092 Score: 87
Period size: 16 Copynumber: 4.2 Consensus size: 15
26017 TGATGTAGTG
*
26027 GTGGTCTAGTTGTGTA
1 GTGGTCTAGTGGT-TA
26043 GTGGTCTAGTGGTTA
1 GTGGTCTAGTGGTTA
*
26058 GGGGTCTAGTGGTCTA
1 GTGGTCTAGTGGT-TA
26074 GTGGTCTAGTGGTCTA
1 GTGGTCTAGTGGT-TA
26090 GTG
1 GTG
26093 AGTGTAAGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
15 14 0.30
16 32 0.70
ACGTcount: A:0.12, C:0.09, G:0.41, T:0.38
Consensus pattern (15 bp):
GTGGTCTAGTGGTTA
Left flanking sequence: Indices 25527 -- 26026
GGTGGTAACCCCGCGTAACTCCGGAGGACACCCGCTCCACGCGAGCCCGACAATGGTGGGGGCCC
CCCGTTACGAGCGTGGGGGGTCCTTGGGGACGGATCAGGAAAGAGTTCCCCCGTAGATCGACGAT
AGAACCTGGGGTTGCCGAGGATGTCGCCCCATCGGGCGAGAGATAGCGCGATGTGCGAGAGACAC
GGAGCGGGAGACACCTGGCCGACACGCGTTTGTACAATGGGTGAGAGGGAGCCGTGGGGTTTGTG
TGCGGATGGTGCGGGCGGTGTGCGGGTGGTGTGCGGTGGAGTGCGGTGCGTGGGTCAACGGCAGT
TTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTGTGGTGGTATTGCCTAATGGGGTTTAAGT
GGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAGGTGGAGGAGAGGTGGTGTGTGGACGAGAG
GTGGGTGGGGGACGAGAGGTGTTGTGGTGTAGTGGTGATGTAGTG
Right flanking sequence: Indices 26093 -- 26592
AGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGTAGCTGT
TCGTGGAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACCGACGCG
TCCGCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGTTCTTATTGTGTCAGGTTATC
GACCCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCTTGGGACAATGGCCTC
AGCCTGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAGCGTGGCTTTCTA
CGAACAATGGTGGCTTGGTTGTCGTCTGAGGAGCTGGTTGACACGACCGTCGAGTCGAGCTGGGA
TAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGACCGTATTTAGTCGAATTAGCTC
GTGTCTCGAGTCAAAGGACTCGTTTCCACCTGCTGGGCTCTCCAC
Found at i:26362 original size:11 final size:11
Alignment explanation
Indices: 26346--26378 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
26336 CTTGGGACAA
26346 TGGCCTCAGCC
1 TGGCCTCAGCC
26357 TGGCCTCAGCC
1 TGGCCTCAGCC
26368 TGGCCTCAGCC
1 TGGCCTCAGCC
26379 AGAGGTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.45, G:0.27, T:0.18
Consensus pattern (11 bp):
TGGCCTCAGCC
Left flanking sequence: Indices 25846 -- 26345
GGCAGTTTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTGTGGTGGTATTGCCTAATGGGGT
TTAAGTGGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAGGTGGAGGAGAGGTGGTGTGTGGA
CGAGAGGTGGGTGGGGGACGAGAGGTGTTGTGGTGTAGTGGTGATGTAGTGGTGGTCTAGTTGTG
TAGTGGTCTAGTGGTTAGGGGTCTAGTGGTCTAGTGGTCTAGTGGTCTAGTGAGTGTAAGGTGTA
GTGGTGGTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGT
CTGACTGATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACCGACGCGTCCGCCCTCGACA
ATTGTCCTATTGTGTTCTCGGACACCTATTGTTCTTATTGTGTCAGGTTATCGACCCCAGAGAAC
GATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCTTGGGACAA
Right flanking sequence: Indices 26379 -- 26878
AGAGGTTTTTGGGGACAATGGCCTCAGCGTGGCTTTCTACGAACAATGGTGGCTTGGTTGTCGTC
TGAGGAGCTGGTTGACACGACCGTCGAGTCGAGCTGGGATAGCCATTCGCGACCGAGTCGAGCTA
AGATAGCGCCATTGCGACCGTATTTAGTCGAATTAGCTCGTGTCTCGAGTCAAAGGACTCGTTTC
CACCTGCTGGGCTCTCCACCTGCTGGCTCTCCACCTGCTGGCTCTCCATTTCCATGGTCGTTCTC
CTGATAGGCTCACCATTGCCATCATCTCGTATCCATCTGATAGGCGATCAATTGCCATGATCTCG
TTCACCTACGGGGCTCCCCGTATCCATGGTCTCGTTCTCAAGCCTCGCTCTCCATTTCCATGGTC
TCGTTCTGAAGACTACCTCTCCATTGCCATCGTCTCGTTCACCAGATAGACTCTCCATACCATGG
TTTAGTTCACCTGTTGGCTCTCCTTTGCCATAACCTCGTTCACCT
Found at i:26528 original size:30 final size:29
Alignment explanation
Indices: 26468--26528 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
26458 ACACGACCGT
**
26468 CGAGTCGAGCTGGGATAGCCATTCGCGAC
1 CGAGTCGAGCTAAGATAGCCATTCGCGAC
26497 CGAGTCGAGCTAAGATAGCGCCATT-GCGAC
1 CGAGTCGAGCTAAGATA--GCCATTCGCGAC
26527 CG
1 CG
26529 TATTTAGTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 15 0.54
30 7 0.25
31 6 0.21
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.16
Consensus pattern (29 bp):
CGAGTCGAGCTAAGATAGCCATTCGCGAC
Left flanking sequence: Indices 25968 -- 26467
TGTGTGGACGAGAGGTGGGTGGGGGACGAGAGGTGTTGTGGTGTAGTGGTGATGTAGTGGTGGTC
TAGTTGTGTAGTGGTCTAGTGGTTAGGGGTCTAGTGGTCTAGTGGTCTAGTGGTCTAGTGAGTGT
AAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGTAGCTGTTCGTG
GAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACCGACGCGTCCGC
CCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGTTCTTATTGTGTCAGGTTATCGACCC
CAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCTTGGGACAATGGCCTCAGCCT
GGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAGCGTGGCTTTCTACGAAC
AATGGTGGCTTGGTTGTCGTCTGAGGAGCTGGTTGACACGACCGT
Right flanking sequence: Indices 26529 -- 27028
TATTTAGTCGAATTAGCTCGTGTCTCGAGTCAAAGGACTCGTTTCCACCTGCTGGGCTCTCCACC
TGCTGGCTCTCCACCTGCTGGCTCTCCATTTCCATGGTCGTTCTCCTGATAGGCTCACCATTGCC
ATCATCTCGTATCCATCTGATAGGCGATCAATTGCCATGATCTCGTTCACCTACGGGGCTCCCCG
TATCCATGGTCTCGTTCTCAAGCCTCGCTCTCCATTTCCATGGTCTCGTTCTGAAGACTACCTCT
CCATTGCCATCGTCTCGTTCACCAGATAGACTCTCCATACCATGGTTTAGTTCACCTGTTGGCTC
TCCTTTGCCATAACCTCGTTCACCTGCTGACTCTCCATTTTCATAATCTCGTTCACCTGGGCTTT
CCGTCTCTATGGTCTCGTCCACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTCT
CTTATATACATTAAATCGTTACCTAAGGGTTCTGCTTAACGAACT
Found at i:26603 original size:15 final size:15
Alignment explanation
Indices: 26572--26621 Score: 91
Period size: 15 Copynumber: 3.3 Consensus size: 15
26562 AGGACTCGTT
26572 TCCACCTGCTGGGCTC
1 TCCACCTGCT-GGCTC
26588 TCCACCTGCTGGCTC
1 TCCACCTGCTGGCTC
26603 TCCACCTGCTGGCTC
1 TCCACCTGCTGGCTC
26618 TCCA
1 TCCA
26622 TTTCCATGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 24 0.71
16 10 0.29
ACGTcount: A:0.08, C:0.46, G:0.20, T:0.26
Consensus pattern (15 bp):
TCCACCTGCTGGCTC
Left flanking sequence: Indices 26072 -- 26571
TAGTGGTCTAGTGGTCTAGTGAGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGT
GGAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGC
TGGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTG
TTCTTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGA
AAGGCTTGGGACAATGGCCTCAGCCTGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAA
TGGCCTCAGCGTGGCTTTCTACGAACAATGGTGGCTTGGTTGTCGTCTGAGGAGCTGGTTGACAC
GACCGTCGAGTCGAGCTGGGATAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGAC
CGTATTTAGTCGAATTAGCTCGTGTCTCGAGTCAAAGGACTCGTT
Right flanking sequence: Indices 26622 -- 27121
TTTCCATGGTCGTTCTCCTGATAGGCTCACCATTGCCATCATCTCGTATCCATCTGATAGGCGAT
CAATTGCCATGATCTCGTTCACCTACGGGGCTCCCCGTATCCATGGTCTCGTTCTCAAGCCTCGC
TCTCCATTTCCATGGTCTCGTTCTGAAGACTACCTCTCCATTGCCATCGTCTCGTTCACCAGATA
GACTCTCCATACCATGGTTTAGTTCACCTGTTGGCTCTCCTTTGCCATAACCTCGTTCACCTGCT
GACTCTCCATTTTCATAATCTCGTTCACCTGGGCTTTCCGTCTCTATGGTCTCGTCCACCTCCAA
TTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTCTCTTATATACATTAAATCGTTACCTAAGG
GTTCTGCTTAACGAACTCAACACCCTTCTGGATGTTCTTGATCAAGGTCTCCTTGGCGGTCTTGA
CCATCTCCTCCTCGTAGTCAGCCAACTCACCCAAGCCGTGGATCT
Found at i:26764 original size:34 final size:34
Alignment explanation
Indices: 26726--26808 Score: 114
Period size: 34 Copynumber: 2.4 Consensus size: 34
26716 GCTCCCCGTA
*
26726 TCCATGGTCTCGTTCTCAAGCCT-CGCTCTCCATT
1 TCCATGGTCTCGTTCTCAAGACTAC-CTCTCCATT
*
26760 TCCATGGTCTCGTTCTGAAGACTACCTCTCCATT
1 TCCATGGTCTCGTTCTCAAGACTACCTCTCCATT
* *
26794 GCCATCGTCTCGTTC
1 TCCATGGTCTCGTTC
26809 ACCAGATAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
34 43 0.98
35 1 0.02
ACGTcount: A:0.13, C:0.36, G:0.16, T:0.35
Consensus pattern (34 bp):
TCCATGGTCTCGTTCTCAAGACTACCTCTCCATT
Left flanking sequence: Indices 26226 -- 26725
GCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGTTCTTATTGTGTCAGGTTATCGAC
CCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCTTGGGACAATGGCCTCAGC
CTGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAGCGTGGCTTTCTACGA
ACAATGGTGGCTTGGTTGTCGTCTGAGGAGCTGGTTGACACGACCGTCGAGTCGAGCTGGGATAG
CCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGACCGTATTTAGTCGAATTAGCTCGTG
TCTCGAGTCAAAGGACTCGTTTCCACCTGCTGGGCTCTCCACCTGCTGGCTCTCCACCTGCTGGC
TCTCCATTTCCATGGTCGTTCTCCTGATAGGCTCACCATTGCCATCATCTCGTATCCATCTGATA
GGCGATCAATTGCCATGATCTCGTTCACCTACGGGGCTCCCCGTA
Right flanking sequence: Indices 26809 -- 27308
ACCAGATAGACTCTCCATACCATGGTTTAGTTCACCTGTTGGCTCTCCTTTGCCATAACCTCGTT
CACCTGCTGACTCTCCATTTTCATAATCTCGTTCACCTGGGCTTTCCGTCTCTATGGTCTCGTCC
ACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTCTCTTATATACATTAAATCGTT
ACCTAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGGATGTTCTTGATCAAGGTCTCCTTGGC
GGTCTTGACCATCTCCTCCTCGTAGTCAGCCAACTCACCCAAGCCGTGGATCTTGGCCACACCCT
GGGGGCCCAAGGTCACCTTGGAAGAGAAGAAGTCGACACCCTCGGACTTGAACAAGGGCGAGTCC
ACGAAAGTGGGCTCGATCACGTCCTGCTCACCAGCCAAACCGTCCAAAACGGCACCGGCCATGCG
GGCACCGGCCTGGGCCATCGACAAAGTGGCGGAACCAGCACCGTC
Found at i:26875 original size:33 final size:33
Alignment explanation
Indices: 26838--26912 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
26828 CCATGGTTTA
* *
26838 GTTCACCTGTTGGCTCTCC-TTTGCCATAACCTC
1 GTTCACCTGCTGACTCTCCATTT-CCATAACCTC
* *
26871 GTTCACCTGCTGACTCTCCATTTTCATAATCTC
1 GTTCACCTGCTGACTCTCCATTTCCATAACCTC
26904 GTTCACCTG
1 GTTCACCTG
26913 GGCTTTCCGT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
33 34 0.92
34 3 0.08
ACGTcount: A:0.15, C:0.35, G:0.13, T:0.37
Consensus pattern (33 bp):
GTTCACCTGCTGACTCTCCATTTCCATAACCTC
Left flanking sequence: Indices 26338 -- 26837
TGGGACAATGGCCTCAGCCTGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCT
CAGCGTGGCTTTCTACGAACAATGGTGGCTTGGTTGTCGTCTGAGGAGCTGGTTGACACGACCGT
CGAGTCGAGCTGGGATAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGACCGTATT
TAGTCGAATTAGCTCGTGTCTCGAGTCAAAGGACTCGTTTCCACCTGCTGGGCTCTCCACCTGCT
GGCTCTCCACCTGCTGGCTCTCCATTTCCATGGTCGTTCTCCTGATAGGCTCACCATTGCCATCA
TCTCGTATCCATCTGATAGGCGATCAATTGCCATGATCTCGTTCACCTACGGGGCTCCCCGTATC
CATGGTCTCGTTCTCAAGCCTCGCTCTCCATTTCCATGGTCTCGTTCTGAAGACTACCTCTCCAT
TGCCATCGTCTCGTTCACCAGATAGACTCTCCATACCATGGTTTA
Right flanking sequence: Indices 26913 -- 27412
GGCTTTCCGTCTCTATGGTCTCGTCCACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTA
TCGTCTCTTATATACATTAAATCGTTACCTAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGG
ATGTTCTTGATCAAGGTCTCCTTGGCGGTCTTGACCATCTCCTCCTCGTAGTCAGCCAACTCACC
CAAGCCGTGGATCTTGGCCACACCCTGGGGGCCCAAGGTCACCTTGGAAGAGAAGAAGTCGACAC
CCTCGGACTTGAACAAGGGCGAGTCCACGAAAGTGGGCTCGATCACGTCCTGCTCACCAGCCAAA
CCGTCCAAAACGGCACCGGCCATGCGGGCACCGGCCTGGGCCATCGACAAAGTGGCGGAACCAGC
ACCGTCCTTGGCCTTGACAACCTCGTCACCACCAAACTGGATGCGGTGGATAAGCGCGTCACGCT
TGTCCTGGGCCATGGTCTTGTGGTTGGTCTGCGAGATCAAGGGGA
Found at i:28777 original size:10 final size:10
Alignment explanation
Indices: 28762--28792 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
28752 GGGTGGATCG
28762 GCCACTGGGC
1 GCCACTGGGC
28772 GCCACTGGGC
1 GCCACTGGGC
*
28782 ACCACTGGGC
1 GCCACTGGGC
28792 G
1 G
28793 TCCATTTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.39, G:0.39, T:0.10
Consensus pattern (10 bp):
GCCACTGGGC
Left flanking sequence: Indices 28262 -- 28761
TGCAGGAGGTGATGGTACCGAAGGAAGTGTCGCTGAAATAGGGGCATTGGGCGGCGCGAGGCAGC
AATTGACGGGTGGAGGTGGGTGGTTTTACGGCGTGGAAGTGGGCCCAGCTTTGAGCGGGGCGATT
TACGTGGGGTGGTGCCGACTTTTCACTGCTGGGATCACTTCCGGTTATCGGCCCATGTGGGTAAT
TCTCGCCGCCTATAGGGCAGCCTCGCCGAGCAGGAGCCGAGACACGGGCATGTGGCGGGCGAAAG
TCGTCAATTGGGGACGCGGGCAGGTCGAGAGGGTGGTTGGGGGGGTGGAGAGTGCCCAGGTGTCG
GCTATCTAGGCTTTGGGTCGGTTTTTTAAGCGGCAATTATACTGGTGTTCACCGACGAATAGCCA
TTTTTTCGATTACGTCATCGGGTTGATCCCGAAAGGCTGACACCAGATCAGGGGAAGCGAAGATG
GGGTTACAAAAGGTAGCGAGGGTTGCGTGGGGAGGGGGTGGATCG
Right flanking sequence: Indices 28793 -- 29292
TCCATTTGGATTCAAAGCCCGCACCGGCGTGTTCCGCGCTACCCGAATGTGCCGTAAATGCCCAT
CGCTACCGTTGCTGTGAAAAATTACCCCGTGATTTAATGCCCGTATGCATGTGACAATGGTTATG
GGCGCGGGGCGAGTGTAGTGGTTATCGCGACATGACTGGTGAAGTCTCATTTGCGGTTAGAATCT
TTGAGGCTCACGTGTCGCCAATCACGTGGTTATGTTTGCAATTTTCACGTGTCTCACTTATCTAT
TGTCACCTGTCACCTGGTCACGTGACTACGTATATAACATGGCGTGGTGGTGTTGCGTCAAATCG
TGGGGTAGGCCATCGGTCAGACTGTTGGGTCGAACGGCTCTGTTCGCGTAGACCAGCCCCACGAG
CGTATTGTATACTCCTTTTGTGCCCCGGTTTGCGAGGCGACCCGCAGATCTCTAACCCTTCCTCT
TTAAGACCCTACTGGAGAATTACACAGCCTGGCCACCACGACATG
Found at i:30391 original size:15 final size:15
Alignment explanation
Indices: 30371--30400 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
30361 CGACGAGGAG
30371 GCTCCCCAGCCCACC
1 GCTCCCCAGCCCACC
30386 GCTCCCCAGCCCACC
1 GCTCCCCAGCCCACC
30401 TCTGCTCCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.67, G:0.13, T:0.07
Consensus pattern (15 bp):
GCTCCCCAGCCCACC
Left flanking sequence: Indices 29871 -- 30370
TATCGAGGACGGGCCCGTGGTCTCCACCACCGAAACCTGGCTGTCCCGTCCACTCTTCGGCTCCC
AGGCTATCTCATCGCCCCCCATCGCTCAGACACCGCCCACACACCCCCACACCTTCGCTACATGC
GATAATGGCACCCACCACCTGGCTCCAGCTTGCCTTCCCAATTAGGAAATACGCGCGATCCGGGG
TTACCTAGGCACACCGGCCAACTCTAATTATCAGGGGCACCCCGCCGTTGTATATAACTAGCCGA
GATCCTTGTAATTCTGCTCTCCACTCGACAATGAAGGCGTTTAGCTTGCTTTCCTACTTTTTCCT
CGCGTTGGTGGTGCAAGCCGAGGCCTCGCTCTTCGGAGGCATCCTCAACGGAGTCACCCAGGTCA
TCCAGGGGGGTACCTGTCTTATTTTCAAGATCAACTGCAAGCCGAGTGGCTCCAACCCTTCGCCC
CAGCCCCAGCCCACGGACGAGTGGGAGTGCGACGACGACGAGGAG
Right flanking sequence: Indices 30401 -- 30900
TCTGCTCCTGCTCCCAAGCCCACTACCGCGGCTCCCCAGCCTTCTTCTGGTCCCCAGCCCACCCT
GAACGGTCCCCAGCCCACCCTGAACGGTCCCCAGCCCACTCTGAACGGCCCCCAGCCCACTTCGG
GTCCCCAGCCTTCCGAGTCGTTGGACTGCGATGAGGACGAGGCCACTCCCACCGGGGGAGCTGGC
GAGAACCAGAACCAGGGTGGCAGCTCTGGCAACTGGTGGGACGGGATTGTCGACACCATCTCCGG
GTGGTTCAAGGGCAAGCGTGACCTCGAGGAGATGCCACTGATGGTGGTGTCGCCCGAGCTCTACG
CCAGAGCCAACGGGGCTGTTGGTGTGCGTGCTGCGGCCGGTGCTGTGGCGGTGGCCGGGGTTGCT
CTTTTGATTTAGGCGTTTTGACTTTGCTTGATTTCCGTTTGATTTACGTTTGATTTTACCTAGCA
GTACCAATAGATTGCATTTAGAAAAGTGTAGAACCAGGTGGAGCA
Found at i:30526 original size:21 final size:21
Alignment explanation
Indices: 30449--30525 Score: 136
Period size: 21 Copynumber: 3.7 Consensus size: 21
30439 GCCTTCTTCT
30449 GGTCCCCAGCCCACCCTGAAC
1 GGTCCCCAGCCCACCCTGAAC
30470 GGTCCCCAGCCCACCCTGAAC
1 GGTCCCCAGCCCACCCTGAAC
*
30491 GGTCCCCAGCCCACTCTGAAC
1 GGTCCCCAGCCCACCCTGAAC
*
30512 GGCCCCCAGCCCAC
1 GGTCCCCAGCCCAC
30526 TTCGGGTCCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.18, C:0.53, G:0.19, T:0.09
Consensus pattern (21 bp):
GGTCCCCAGCCCACCCTGAAC
Left flanking sequence: Indices 29949 -- 30448
GCCCCCCATCGCTCAGACACCGCCCACACACCCCCACACCTTCGCTACATGCGATAATGGCACCC
ACCACCTGGCTCCAGCTTGCCTTCCCAATTAGGAAATACGCGCGATCCGGGGTTACCTAGGCACA
CCGGCCAACTCTAATTATCAGGGGCACCCCGCCGTTGTATATAACTAGCCGAGATCCTTGTAATT
CTGCTCTCCACTCGACAATGAAGGCGTTTAGCTTGCTTTCCTACTTTTTCCTCGCGTTGGTGGTG
CAAGCCGAGGCCTCGCTCTTCGGAGGCATCCTCAACGGAGTCACCCAGGTCATCCAGGGGGGTAC
CTGTCTTATTTTCAAGATCAACTGCAAGCCGAGTGGCTCCAACCCTTCGCCCCAGCCCCAGCCCA
CGGACGAGTGGGAGTGCGACGACGACGAGGAGGCTCCCCAGCCCACCGCTCCCCAGCCCACCTCT
GCTCCTGCTCCCAAGCCCACTACCGCGGCTCCCCAGCCTTCTTCT
Right flanking sequence: Indices 30526 -- 31025
TTCGGGTCCCCAGCCTTCCGAGTCGTTGGACTGCGATGAGGACGAGGCCACTCCCACCGGGGGAG
CTGGCGAGAACCAGAACCAGGGTGGCAGCTCTGGCAACTGGTGGGACGGGATTGTCGACACCATC
TCCGGGTGGTTCAAGGGCAAGCGTGACCTCGAGGAGATGCCACTGATGGTGGTGTCGCCCGAGCT
CTACGCCAGAGCCAACGGGGCTGTTGGTGTGCGTGCTGCGGCCGGTGCTGTGGCGGTGGCCGGGG
TTGCTCTTTTGATTTAGGCGTTTTGACTTTGCTTGATTTCCGTTTGATTTACGTTTGATTTTACC
TAGCAGTACCAATAGATTGCATTTAGAAAAGTGTAGAACCAGGTGGAGCACCAGGTGGTTTGTGA
CGAAAAAAACGAGTGGAAGCGTTGCGAAAGTGGCCCTGGAGATTGGTGAAAATTTCCATTGGTGA
AAAATTCTAGTGGTCGGAACTACTCTCGGTTAATAGGTTGCATGT
Found at i:31119 original size:20 final size:20
Alignment explanation
Indices: 31096--31156 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
31086 AACTCCACAG
*
31096 GCCTGGGTCCAACCCTTTAA
1 GCCTGGGTCCAACCCTATAA
* *
31116 GCCTGGGTCCAACGCTATAG
1 GCCTGGGTCCAACCCTATAA
*
31136 GTCTGGGTCCAACCCTATAA
1 GCCTGGGTCCAACCCTATAA
31156 G
1 G
31157 TGAAGGATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (20 bp):
GCCTGGGTCCAACCCTATAA
Left flanking sequence: Indices 30596 -- 31095
GAGAACCAGAACCAGGGTGGCAGCTCTGGCAACTGGTGGGACGGGATTGTCGACACCATCTCCGG
GTGGTTCAAGGGCAAGCGTGACCTCGAGGAGATGCCACTGATGGTGGTGTCGCCCGAGCTCTACG
CCAGAGCCAACGGGGCTGTTGGTGTGCGTGCTGCGGCCGGTGCTGTGGCGGTGGCCGGGGTTGCT
CTTTTGATTTAGGCGTTTTGACTTTGCTTGATTTCCGTTTGATTTACGTTTGATTTTACCTAGCA
GTACCAATAGATTGCATTTAGAAAAGTGTAGAACCAGGTGGAGCACCAGGTGGTTTGTGACGAAA
AAAACGAGTGGAAGCGTTGCGAAAGTGGCCCTGGAGATTGGTGAAAATTTCCATTGGTGAAAAAT
TCTAGTGGTCGGAACTACTCTCGGTTAATAGGTTGCATGTGTCAAGTTAGGCCGTTTAAGAATGG
TATAGCCGTATGACTTAGTTGGCCTGACAGTTACCAACTCCACAG
Right flanking sequence: Indices 31157 -- 31656
TGAAGGATGTTGTTTATTTTGCAGCCACAAGCATTCCTACTATAGTGGCTTTTAGATCGTCTACA
ATCAGCTTAGTTGGCTTGACAGTAACTAACTCTACAAAGCTTGGGTCAAACCCTATAAGTAATGT
TGTTTACTTTGCAGCCACATCCTACTAAAGTGGCTTTTAGATCGTCTACAATGCAGCTGCATTGT
GTCTGATCAATCCTGCGGTGTGTACCCGCCTTCGTTAGTGGTACGACTATGGTAGGTAGCGTATT
CTGACCGTGACTCTCCACTTTACTTGATCCAGAATCACTTAACACATCCATCCCTCCTAATACTT
TTCCAATCATCGCCTGTAACAATGACTATCTACCCTAACAATCACTATTTACCCTAACAATCACT
ATCTACTCTAACAACCACTATCTATTGTGTCTAGTTTATAGATTTAATCCATCGCCCTCGATGCA
ACCACTAGTCGTACATATCCGCCCTCCCGTCTGCATCCACCTGCC
Found at i:31522 original size:19 final size:19
Alignment explanation
Indices: 31498--31570 Score: 110
Period size: 19 Copynumber: 3.8 Consensus size: 19
31488 TCATCGCCTG
*
31498 TAACAATGACTATCTACCC
1 TAACAATCACTATCTACCC
*
31517 TAACAATCACTATTTACCC
1 TAACAATCACTATCTACCC
*
31536 TAACAATCACTATCTACTC
1 TAACAATCACTATCTACCC
*
31555 TAACAACCACTATCTA
1 TAACAATCACTATCTA
31571 TTGTGTCTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.38, C:0.32, G:0.01, T:0.29
Consensus pattern (19 bp):
TAACAATCACTATCTACCC
Left flanking sequence: Indices 30998 -- 31497
AACTACTCTCGGTTAATAGGTTGCATGTGTCAAGTTAGGCCGTTTAAGAATGGTATAGCCGTATG
ACTTAGTTGGCCTGACAGTTACCAACTCCACAGGCCTGGGTCCAACCCTTTAAGCCTGGGTCCAA
CGCTATAGGTCTGGGTCCAACCCTATAAGTGAAGGATGTTGTTTATTTTGCAGCCACAAGCATTC
CTACTATAGTGGCTTTTAGATCGTCTACAATCAGCTTAGTTGGCTTGACAGTAACTAACTCTACA
AAGCTTGGGTCAAACCCTATAAGTAATGTTGTTTACTTTGCAGCCACATCCTACTAAAGTGGCTT
TTAGATCGTCTACAATGCAGCTGCATTGTGTCTGATCAATCCTGCGGTGTGTACCCGCCTTCGTT
AGTGGTACGACTATGGTAGGTAGCGTATTCTGACCGTGACTCTCCACTTTACTTGATCCAGAATC
ACTTAACACATCCATCCCTCCTAATACTTTTCCAATCATCGCCTG
Right flanking sequence: Indices 31571 -- 32070
TTGTGTCTAGTTTATAGATTTAATCCATCGCCCTCGATGCAACCACTAGTCGTACATATCCGCCC
TCCCGTCTGCATCCACCTGCCACCCGCGGCGGCAACGGTGTTCGCTGCATGGAACAATCCGTGGT
GGTGCTGCCCATTCGCACCGTAGCAACGGCGATGCCAAGCCGTCTATACACAACTTGCAGCGCCC
CTTCCGGTTGCTTGAGGGTCGCCTGGGTTGCTCGATGCAGCTGAGGCGACCCTGGCGGAAGGTGG
ACACCGGCTCTTTGTCGAGAGCTACACGTGTTCCCCCGTGCTTATTGGTACCCAAATATGCGAGA
CTATCCTCGATCCTCGGCAGACATTTTTCGCAGCCGACACGGGCTACGGGCCACGGTAAACCCGT
GGGAACGGGCTCGGAGCAGTGTAGACACCTTCGGGGGGCTCTGGTGGACCCCTGGTTGCATCTCT
CCGGCTTCTTTTGCGTTTCCACCTGCCGCTGCCCCTGTTTTCCTG
Found at i:34642 original size:14 final size:12
Alignment explanation
Indices: 34582--34685 Score: 133
Period size: 12 Copynumber: 8.9 Consensus size: 12
34572 AAGAAGAAAT
*
34582 AGAGAAAAGTAG
1 AGAGAAAAGAAG
34594 AGAGAAAAGAAG
1 AGAGAAAAGAAG
34606 AGAG--AA-AAG
1 AGAGAAAAGAAG
34615 AGAGAAAAGAAG
1 AGAGAAAAGAAG
*
34627 AGAGAAAAGATG
1 AGAGAAAAGAAG
*
34639 AGAGAAAGGAAG
1 AGAGAAAAGAAG
* * *
34651 AAAGAAAGGGAG
1 AGAGAAAAGAAG
34663 AGAGAAAAGAAG
1 AGAGAAAAGAAG
34675 AGAGAAAAGAA
1 AGAGAAAAGAA
34686 TCTGAACGCA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
9 7 0.09
10 2 0.03
11 2 0.03
12 69 0.86
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (12 bp):
AGAGAAAAGAAG
Left flanking sequence: Indices 34082 -- 34581
CCGCTCGAGACCAACAAGCTGTTTGTCACCATCAAGCGCCAGCCGGTGTTGCCGCCGGTCAAGAA
GCCGTTGACCACCAACTTCAACGACGTGCACACGCTGGAGGCCGCGGCCATCCACCAGGCGGAGC
TCAATCTGGCCCAGGACAACACCCCGGCGAACATCGGGACCCTGGCTGGGTCGGAGTTGCACGCG
CTCAGCGAGGACAACCTCCTGCCGCGGGGGATCCCCATCGGGCGCAAGACGTCGGAGGAGCACTC
CTACCGCACCGGTGGCATTGTCGAGCTGGTGGTGAACGTCGACGGCGTGCACAAGATTGTCATTG
AGAACGTGCTGGAGGAGGAGCCGCACGACGACGACGAGTTTTCTGTGCCGGCGCTGCCCGAGGTG
AAGAAGAAGAAGAAGCGGCTGAAGAAGCGCAAGCTGAAGCAGGGGTCGCGGCACAACTCGGGCAC
GGGCGAGGAAGAGGAGTCTCTTTTAGGTTAATAGGAAGAAGAAAT
Right flanking sequence: Indices 34686 -- 35185
TCTGAACGCAGTAGGGGGTCTGCGGATGTAGTGGTGTTCTCTGGAGGGTTTGGTTTCTGGAGTCT
GGCCATGGTTCTCGGGTTCAGGTAGGCTGGTCGCAAACAGGGCTGTTCGGTGGAGTAGTGTGACC
ATGATTGTGGTTTGAGGGCTTCCTTATGACTTCTGACCGTTTAGTCTGCTGATCAGCTGATAATA
CATTTTAGGTTTAGTCATTCAGAGAGAATGGATCGGTTTAGAGTGGTTTGAGAAACTGGTAGAAC
TCGGTTTTAAATACGAGTGTCTCGTCTCGGGTTGTGAAGAAATAAACATTGACAAGTAGACCCTA
CGGTTAAGTAGACCCTACAATCAAGTAGACCCTACGATCAATAGACCCTACAATCAACAAAACTG
CAACGAAGGACCCTTAAGAACTAACTACCAAAACTGTTTTAGTAGACCCATTAGTCGTGCTAAAT
CGCGACAACATGCTGTGCGTCCGGTGAGTACCCAACACGGGTGTA
Found at i:35057 original size:16 final size:17
Alignment explanation
Indices: 34998--35067 Score: 97
Period size: 17 Copynumber: 4.2 Consensus size: 17
34988 TAAACATTGA
**
34998 CAAGTAGACCCTACGGT
1 CAAGTAGACCCTACAAT
*
35015 TAAGTAGACCCTACAAT
1 CAAGTAGACCCTACAAT
*
35032 CAAGTAGACCCTACGAT
1 CAAGTAGACCCTACAAT
35049 CAA-TAGACCCTACAAT
1 CAAGTAGACCCTACAAT
35065 CAA
1 CAA
35068 CAAAACTGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
16 15 0.32
17 32 0.68
ACGTcount: A:0.39, C:0.29, G:0.14, T:0.19
Consensus pattern (17 bp):
CAAGTAGACCCTACAAT
Left flanking sequence: Indices 34498 -- 34997
GCGCAAGCTGAAGCAGGGGTCGCGGCACAACTCGGGCACGGGCGAGGAAGAGGAGTCTCTTTTAG
GTTAATAGGAAGAAGAAATAGAGAAAAGTAGAGAGAAAAGAAGAGAGAAAAGAGAGAAAAGAAGA
GAGAAAAGATGAGAGAAAGGAAGAAAGAAAGGGAGAGAGAAAAGAAGAGAGAAAAGAATCTGAAC
GCAGTAGGGGGTCTGCGGATGTAGTGGTGTTCTCTGGAGGGTTTGGTTTCTGGAGTCTGGCCATG
GTTCTCGGGTTCAGGTAGGCTGGTCGCAAACAGGGCTGTTCGGTGGAGTAGTGTGACCATGATTG
TGGTTTGAGGGCTTCCTTATGACTTCTGACCGTTTAGTCTGCTGATCAGCTGATAATACATTTTA
GGTTTAGTCATTCAGAGAGAATGGATCGGTTTAGAGTGGTTTGAGAAACTGGTAGAACTCGGTTT
TAAATACGAGTGTCTCGTCTCGGGTTGTGAAGAAATAAACATTGA
Right flanking sequence: Indices 35068 -- 35567
CAAAACTGCAACGAAGGACCCTTAAGAACTAACTACCAAAACTGTTTTAGTAGACCCATTAGTCG
TGCTAAATCGCGACAACATGCTGTGCGTCCGGTGAGTACCCAACACGGGTGTAACAATGACAGAA
CCACTGGCGATTCCTCCACGTCGCCGCACTTCTCGCTGTTCCAAATGTCCCGATCCGTCCCGGTG
CAGGGCTTAATCTGCACGGTTCCTCGTATTTACGAAAGAGCACGTGATAGTATACCATCGTAGAG
GGGAAGAAGGGGGTGGAAAGAGGAGGCGTAAAACGAGACGGTCTTCTGTTGGAGAGTTTATTGTT
TTGGCACATACACCAAAAATGCTCGTCAAGGCTAACCTTAGCATTCTAGTACCCAAATCACACCA
TTTCGTATGTCTGCCCGTTTCTTCGTCTGACTAAAACGGTTAATGACACAGCTAACGCTTGAGGC
AAAATAGAACGTTTTTGCGGTTACGGGCTTGTGTCCACCCAGTGT
Found at i:35061 original size:33 final size:34
Alignment explanation
Indices: 34998--35067 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
34988 TAAACATTGA
* *
34998 CAAGTAGACCCTACGGTTAAGTAGACCCTACAAT
1 CAAGTAGACCCTACGATCAAGTAGACCCTACAAT
35032 CAAGTAGACCCTACGATCAA-TAGACCCTACAAT
1 CAAGTAGACCCTACGATCAAGTAGACCCTACAAT
35065 CAA
1 CAA
35068 CAAAACTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 16 0.47
34 18 0.53
ACGTcount: A:0.39, C:0.29, G:0.14, T:0.19
Consensus pattern (34 bp):
CAAGTAGACCCTACGATCAAGTAGACCCTACAAT
Left flanking sequence: Indices 34498 -- 34997
GCGCAAGCTGAAGCAGGGGTCGCGGCACAACTCGGGCACGGGCGAGGAAGAGGAGTCTCTTTTAG
GTTAATAGGAAGAAGAAATAGAGAAAAGTAGAGAGAAAAGAAGAGAGAAAAGAGAGAAAAGAAGA
GAGAAAAGATGAGAGAAAGGAAGAAAGAAAGGGAGAGAGAAAAGAAGAGAGAAAAGAATCTGAAC
GCAGTAGGGGGTCTGCGGATGTAGTGGTGTTCTCTGGAGGGTTTGGTTTCTGGAGTCTGGCCATG
GTTCTCGGGTTCAGGTAGGCTGGTCGCAAACAGGGCTGTTCGGTGGAGTAGTGTGACCATGATTG
TGGTTTGAGGGCTTCCTTATGACTTCTGACCGTTTAGTCTGCTGATCAGCTGATAATACATTTTA
GGTTTAGTCATTCAGAGAGAATGGATCGGTTTAGAGTGGTTTGAGAAACTGGTAGAACTCGGTTT
TAAATACGAGTGTCTCGTCTCGGGTTGTGAAGAAATAAACATTGA
Right flanking sequence: Indices 35068 -- 35567
CAAAACTGCAACGAAGGACCCTTAAGAACTAACTACCAAAACTGTTTTAGTAGACCCATTAGTCG
TGCTAAATCGCGACAACATGCTGTGCGTCCGGTGAGTACCCAACACGGGTGTAACAATGACAGAA
CCACTGGCGATTCCTCCACGTCGCCGCACTTCTCGCTGTTCCAAATGTCCCGATCCGTCCCGGTG
CAGGGCTTAATCTGCACGGTTCCTCGTATTTACGAAAGAGCACGTGATAGTATACCATCGTAGAG
GGGAAGAAGGGGGTGGAAAGAGGAGGCGTAAAACGAGACGGTCTTCTGTTGGAGAGTTTATTGTT
TTGGCACATACACCAAAAATGCTCGTCAAGGCTAACCTTAGCATTCTAGTACCCAAATCACACCA
TTTCGTATGTCTGCCCGTTTCTTCGTCTGACTAAAACGGTTAATGACACAGCTAACGCTTGAGGC
AAAATAGAACGTTTTTGCGGTTACGGGCTTGTGTCCACCCAGTGT
Found at i:35652 original size:13 final size:13
Alignment explanation
Indices: 35642--35666 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35632 ACACGAGATT
35642 TCACAACGAGAAC
1 TCACAACGAGAAC
35655 TCACAACGAGAA
1 TCACAACGAGAA
35667 TTCTTCAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.16, T:0.08
Consensus pattern (13 bp):
TCACAACGAGAAC
Left flanking sequence: Indices 35142 -- 35641
GCGACAACATGCTGTGCGTCCGGTGAGTACCCAACACGGGTGTAACAATGACAGAACCACTGGCG
ATTCCTCCACGTCGCCGCACTTCTCGCTGTTCCAAATGTCCCGATCCGTCCCGGTGCAGGGCTTA
ATCTGCACGGTTCCTCGTATTTACGAAAGAGCACGTGATAGTATACCATCGTAGAGGGGAAGAAG
GGGGTGGAAAGAGGAGGCGTAAAACGAGACGGTCTTCTGTTGGAGAGTTTATTGTTTTGGCACAT
ACACCAAAAATGCTCGTCAAGGCTAACCTTAGCATTCTAGTACCCAAATCACACCATTTCGTATG
TCTGCCCGTTTCTTCGTCTGACTAAAACGGTTAATGACACAGCTAACGCTTGAGGCAAAATAGAA
CGTTTTTGCGGTTACGGGCTTGTGTCCACCCAGTGTCTACGAACCCACTTTGTGCGTACTCGTTT
GGCACCCGAGGGCTTTTGTACGAGTCGAACGGTTAACACGAGATT
Right flanking sequence: Indices 35667 -- 36166
TTCTTCAGAAACTATAACCTCCCACCTGTCAATGCGTCACTCATCACACTAAACTAACTACCAGT
AGTCTCATCAACCCAACAAATACGACTTAAACTATCCGGGAATATCATCCGAGTCACAAATAAAG
GCTGAACCAACCACACCAACCACACTAACCACACCAACACATATACATACCCACCACCTGGATCT
TCTCCTTCTTCTCTGTTTTCTACTCCTCTTCGTTTCCTCTTCGTCAACTCTTCAACTCCTCTTCG
TCTCCTCGTCTACTCCTCTCCTCCACCTTTTTTCAACCTACAAACTACAACAAATCCATCTAAAT
TCCACAAAACAATCTAAACCTCTTCACATCATCCCCGTCCAAACTCTCCCCACACCATCCCCAAC
CTAGCCCGTCTTCACACCACCCCTATACCACCCCCCCACCCCCCTCCACCGGCTTCCTCCGTCAT
CGGTTGCCACCCGCGCACCTGCACCTGAGGAAAAAACCACACCAA
Found at i:35816 original size:9 final size:9
Alignment explanation
Indices: 35802--35834 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
35792 TAAAGGCTGA
35802 ACCAACCAC
1 ACCAACCAC
35811 ACCAACCAC
1 ACCAACCAC
*
35820 ACTAACCAC
1 ACCAACCAC
35829 ACCAAC
1 ACCAAC
35835 ACATATACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.45, C:0.52, G:0.00, T:0.03
Consensus pattern (9 bp):
ACCAACCAC
Left flanking sequence: Indices 35302 -- 35801
GCACGTGATAGTATACCATCGTAGAGGGGAAGAAGGGGGTGGAAAGAGGAGGCGTAAAACGAGAC
GGTCTTCTGTTGGAGAGTTTATTGTTTTGGCACATACACCAAAAATGCTCGTCAAGGCTAACCTT
AGCATTCTAGTACCCAAATCACACCATTTCGTATGTCTGCCCGTTTCTTCGTCTGACTAAAACGG
TTAATGACACAGCTAACGCTTGAGGCAAAATAGAACGTTTTTGCGGTTACGGGCTTGTGTCCACC
CAGTGTCTACGAACCCACTTTGTGCGTACTCGTTTGGCACCCGAGGGCTTTTGTACGAGTCGAAC
GGTTAACACGAGATTTCACAACGAGAACTCACAACGAGAATTCTTCAGAAACTATAACCTCCCAC
CTGTCAATGCGTCACTCATCACACTAAACTAACTACCAGTAGTCTCATCAACCCAACAAATACGA
CTTAAACTATCCGGGAATATCATCCGAGTCACAAATAAAGGCTGA
Right flanking sequence: Indices 35835 -- 36334
ACATATACATACCCACCACCTGGATCTTCTCCTTCTTCTCTGTTTTCTACTCCTCTTCGTTTCCT
CTTCGTCAACTCTTCAACTCCTCTTCGTCTCCTCGTCTACTCCTCTCCTCCACCTTTTTTCAACC
TACAAACTACAACAAATCCATCTAAATTCCACAAAACAATCTAAACCTCTTCACATCATCCCCGT
CCAAACTCTCCCCACACCATCCCCAACCTAGCCCGTCTTCACACCACCCCTATACCACCCCCCCA
CCCCCCTCCACCGGCTTCCTCCGTCATCGGTTGCCACCCGCGCACCTGCACCTGAGGAAAAAACC
ACACCAAATTTTTCCAGAGGAGGAGCTAGCCACCCACTGTCTGAACCACGAACCCCTGCACAACC
GCGGCCGCTAGCCCACGTCATCCGCCACTAGTCACCTGCCCAGCATGTCGAGCAACACCCCCCGG
TTCCGTCCGACGGCCAAGCCGTTCCTGCCTGGCGAGGGCTACCCC
Found at i:35941 original size:22 final size:22
Alignment explanation
Indices: 35896--35945 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
35886 CCTCTTCGTT
*
35896 TCCTCTTCGTCAACTCTTCAAC
1 TCCTCTTCGTCAACTCGTCAAC
** *
35918 TCCTCTTCGTCTCCTCGTCTAC
1 TCCTCTTCGTCAACTCGTCAAC
35940 TCCTCT
1 TCCTCT
35946 CCTCCACCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.10, C:0.44, G:0.06, T:0.40
Consensus pattern (22 bp):
TCCTCTTCGTCAACTCGTCAAC
Left flanking sequence: Indices 35396 -- 35895
GCACATACACCAAAAATGCTCGTCAAGGCTAACCTTAGCATTCTAGTACCCAAATCACACCATTT
CGTATGTCTGCCCGTTTCTTCGTCTGACTAAAACGGTTAATGACACAGCTAACGCTTGAGGCAAA
ATAGAACGTTTTTGCGGTTACGGGCTTGTGTCCACCCAGTGTCTACGAACCCACTTTGTGCGTAC
TCGTTTGGCACCCGAGGGCTTTTGTACGAGTCGAACGGTTAACACGAGATTTCACAACGAGAACT
CACAACGAGAATTCTTCAGAAACTATAACCTCCCACCTGTCAATGCGTCACTCATCACACTAAAC
TAACTACCAGTAGTCTCATCAACCCAACAAATACGACTTAAACTATCCGGGAATATCATCCGAGT
CACAAATAAAGGCTGAACCAACCACACCAACCACACTAACCACACCAACACATATACATACCCAC
CACCTGGATCTTCTCCTTCTTCTCTGTTTTCTACTCCTCTTCGTT
Right flanking sequence: Indices 35946 -- 36445
CCTCCACCTTTTTTCAACCTACAAACTACAACAAATCCATCTAAATTCCACAAAACAATCTAAAC
CTCTTCACATCATCCCCGTCCAAACTCTCCCCACACCATCCCCAACCTAGCCCGTCTTCACACCA
CCCCTATACCACCCCCCCACCCCCCTCCACCGGCTTCCTCCGTCATCGGTTGCCACCCGCGCACC
TGCACCTGAGGAAAAAACCACACCAAATTTTTCCAGAGGAGGAGCTAGCCACCCACTGTCTGAAC
CACGAACCCCTGCACAACCGCGGCCGCTAGCCCACGTCATCCGCCACTAGTCACCTGCCCAGCAT
GTCGAGCAACACCCCCCGGTTCCGTCCGACGGCCAAGCCGTTCCTGCCTGGCGAGGGCTACCCCT
ACCACCGCGACTATCCTCCTCACCACCAGATGCAGCACCACCACCACCACCACCCGCCGCACGGG
CTGTACCCGCTGTACGCCCCGCAGTACTACAACCCGATGGTGATG
Found at i:37655 original size:21 final size:21
Alignment explanation
Indices: 37614--37655 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37604 CGGTTCATAT
* *
37614 CCGGGTTGGTGTCTGCGGAGC
1 CCGGGGTGGTGTCTGCAGAGC
37635 CCGGGGTGGTG-CTGCCAGAGC
1 CCGGGGTGGTGTCTG-CAGAGC
37656 AGTTTTTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.07, C:0.26, G:0.48, T:0.19
Consensus pattern (21 bp):
CCGGGGTGGTGTCTGCAGAGC
Left flanking sequence: Indices 37114 -- 37613
CACCTCCACCGCGGTCACCCCCGCGCCCAGCGCCAGCCTGACCCACGACGGCACCGAGGCCACCC
CGCTGGCGCTGTCTACCGCGCCGTCCACCCCCAACTGGGCGCTGATTCTCCACCAAACCACCCCC
GGGACCAAGCCCAAACGGGCCCCCGTGGTGCTGGCGCCGCGGGCGGCGGCGGCGCTTGTCCAGGC
CACGCTGGAGCCTGCTCCCGACTTCAACTTGCTGTTGCAGCTGGCCCAGCCGCTCGGGATCATTT
TGTTGCGGGTGATGTTTGACCCCAACTACCGGGTCACCCACGCCCAGTTGCCGCGGTTTGACGTG
ACACCGCACGGGCTCTCGAACCCCGGCAACATCTGCTACATGAACCTGATTTTGCAGGTGCTTGT
GTTTTGCGAGCCCTTCAACCAGCTTCTCCGGTTGATCCACGACAAGGCGCTTGCCCTGCTCGCCA
ACCCGCTGGTGACGCCGCTTTTGGACGCCACCATCCGGTTCATAT
Right flanking sequence: Indices 37656 -- 38155
AGTTTTTTGCCGTGGTTGCAAAACACCCCCGGTTCCTGCATTTGAAGTGGGGCCAGCAGGAGGAC
GCCGAGGAGTTTTTGGGGTACTACTTGGACACGTTGAACGACGAGTTCATCGCTGCCGTGGCCGG
GCTCAACACCCCGACGGTGGACGCGCTCATCCAGCAGTTTTCCGTCGACAACAGCGCCGACACCG
TTGCCTTTTTCAAGGCGCTGGTGAAGGCCGCCGTGGCCAGTGCTCGTGGCACCCGGGTTGATGTG
CAGGACGACTGGTCGGAAGTCGGTCGTAAAAATGTGTCAATCAACCACAACAACGAGCAGGTGCC
AACGCCCATAACGCGGATCTTTGGCGGGCAGATGCGGCTGGAGGTGGTGACGCCCAAGGTGCCCG
GGGCGCGGGCGGTCAAGAAGCTGGTGACGTTGGACCCGTTGCAGCACATTGCGCTCGACCTTGAC
GGCGTCGACCTGATCGAGCAGGCGCTCACCAAGTGGAACGAGGTG
Found at i:38737 original size:42 final size:42
Alignment explanation
Indices: 38663--38909 Score: 148
Period size: 42 Copynumber: 5.8 Consensus size: 42
38653 TAAAGAGTAA
* *
38663 TTATGAAGAGGTGATCAGTTTTGATGAGTAGTCTGTCA-GAATAG
1 TTATGAAGAGGTGAT-AG-TTCGATGAGTAGTCAGTCACG-ATAG
* * *
38707 TTTTGAAGCGGTGATAGTTCGATGAGTAGTCAGTTACGATAG
1 TTATGAAGAGGTGATAGTTCGATGAGTAGTCAGTCACGATAG
* * * **
38749 TTATGAAGTGGTGATTAGTT--ACGA-TAGTCTGTTGCGATAG
1 TTATGAAGAGGTGA-TAGTTCGATGAGTAGTCAGTCACGATAG
* * * * *
38789 ATGTGAAGTGGTGATCAGTTATGATTAGTAGTCAG--ACGATAG
1 TTATGAAGAGGTGAT-AGTT-CGATGAGTAGTCAGTCACGATAG
* * * * *
38831 TTATGGAGTGGTGATTAGTTTCGATGAGTAATCAGTTACGTTAG
1 TTATGAAGAGGTGA-TAG-TTCGATGAGTAGTCAGTCACGATAG
* * *
38875 CTATG-AGTGGTGATCAGCTTCGATGAGTAATCAGT
1 TTATGAAGAGGTGAT-AG-TTCGATGAGTAGTCAGT
38910 TACGTTGGCT
Statistics
Matches: 166, Mismatches: 25, Indels: 25
0.77 0.12 0.12
Matches are distributed among these distances:
39 1 0.01
40 30 0.18
41 3 0.02
42 63 0.38
43 40 0.24
44 29 0.17
ACGTcount: A:0.27, C:0.09, G:0.30, T:0.34
Consensus pattern (42 bp):
TTATGAAGAGGTGATAGTTCGATGAGTAGTCAGTCACGATAG
Left flanking sequence: Indices 38163 -- 38662
TTGTGTTGGACGCCAAGCAGCAGGCGGTGGTCAAGAAGCAGAACTTTATCGACAAGTTGCCGCAC
ATCTTGACCATCCACCTCAAGCGGTTTTCGTTTGGGCTGGGCATCGAGAAGTTGTGCAAGCCCAT
CCGGTACGGACACGACCTCCAGGTGCCCCGCCAGATCATCTACGGCCCCCCGTCCGAGGTGGCCA
ATTTGAGCTACAAGTTGGTGGGGGTGGTGTACCACCACGGCACCTCCGCGGCCAACGGACACTAC
ACGTGCGACGTGGCGACCCCCGAGTGGGTGCGGGTCGACGACACCGTGGTGACGAAGATCGAGGC
TGAGGAGGTGGTGGACACCCGCGACGAGGCTCGCAACGCCTACATTTTGGTGTACCAGCGCCAGG
AGTAGTTAGCATCTGTAATATAGGCTGAGGTTTGGAGTTATGCGTTTTAATAGAATAGAGGAGTA
CTCAAAGGTAGATGGGTAGCAATGAAGGGAGCAGTTAAAGAGTAA
Right flanking sequence: Indices 38910 -- 39409
TACGTTGGCTATGAGTGGTGATCAGTTAGTTATGATCAGCTACGACAGTGCGATCAGTTACGACA
CTTACGACACTCAGATCAGTATTGATCAGTAATGATCAGTAATGATCAGTAATGATCAGTTACGA
CAGTGGTGATCAGTTACGACAGTTATTATCAGTACGACAGCCATGATCAGTAACAATCATTTAAT
GTTCAGTAACGATCGTTTGATCAGTCGCGGGATCACCTGAATTACTCGCCACTGCTCGTCTCTTC
ACGACACTCGTCACGTTGTGGCAACCTTGTTTTACTCAGGAATTAGTGATGCAGCCTATCACACC
ATCTCTGTTGCCTCGTCTAACTAACGTCAGTGTCGGCACACAAACGCCGATCCAGAGGCGGTCTC
GCGTGACTTTCCCCTTTGGTTAGTAGTCCCGGCAGCAGGCGGTCGCGACGGAATGTGAATAGGGG
ACCGTGTATGAAACTGGCCGGGAATGTCACCACGATAGAAAACTA
Found at i:38788 original size:40 final size:40
Alignment explanation
Indices: 38733--38855 Score: 131
Period size: 40 Copynumber: 3.0 Consensus size: 40
38723 GTTCGATGAG
*
38733 TAGTCAGTTACGATAGTTATGAAGTGGTGATTAGTTACGA
1 TAGTCAGTTGCGATAGTTATGAAGTGGTGATTAGTTACGA
* * * * *
38773 TAGTCTGTTGCGATAGATGTGAAGTGGTGATCAGTTATGA
1 TAGTCAGTTGCGATAGTTATGAAGTGGTGATTAGTTACGA
* * *
38813 TTAGT-AGTCAGACGATAGTTATGGAGTGGTGATTAGTTTCGA
1 -TAGTCAGT-TG-CGATAGTTATGAAGTGGTGATTAGTTACGA
38855 T
1 T
38856 GAGTAATCAG
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
40 36 0.55
41 6 0.09
42 24 0.36
ACGTcount: A:0.27, C:0.07, G:0.30, T:0.36
Consensus pattern (40 bp):
TAGTCAGTTGCGATAGTTATGAAGTGGTGATTAGTTACGA
Left flanking sequence: Indices 38233 -- 38732
GACCATCCACCTCAAGCGGTTTTCGTTTGGGCTGGGCATCGAGAAGTTGTGCAAGCCCATCCGGT
ACGGACACGACCTCCAGGTGCCCCGCCAGATCATCTACGGCCCCCCGTCCGAGGTGGCCAATTTG
AGCTACAAGTTGGTGGGGGTGGTGTACCACCACGGCACCTCCGCGGCCAACGGACACTACACGTG
CGACGTGGCGACCCCCGAGTGGGTGCGGGTCGACGACACCGTGGTGACGAAGATCGAGGCTGAGG
AGGTGGTGGACACCCGCGACGAGGCTCGCAACGCCTACATTTTGGTGTACCAGCGCCAGGAGTAG
TTAGCATCTGTAATATAGGCTGAGGTTTGGAGTTATGCGTTTTAATAGAATAGAGGAGTACTCAA
AGGTAGATGGGTAGCAATGAAGGGAGCAGTTAAAGAGTAATTATGAAGAGGTGATCAGTTTTGAT
GAGTAGTCTGTCAGAATAGTTTTGAAGCGGTGATAGTTCGATGAG
Right flanking sequence: Indices 38856 -- 39355
GAGTAATCAGTTACGTTAGCTATGAGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTGGCTA
TGAGTGGTGATCAGTTAGTTATGATCAGCTACGACAGTGCGATCAGTTACGACACTTACGACACT
CAGATCAGTATTGATCAGTAATGATCAGTAATGATCAGTAATGATCAGTTACGACAGTGGTGATC
AGTTACGACAGTTATTATCAGTACGACAGCCATGATCAGTAACAATCATTTAATGTTCAGTAACG
ATCGTTTGATCAGTCGCGGGATCACCTGAATTACTCGCCACTGCTCGTCTCTTCACGACACTCGT
CACGTTGTGGCAACCTTGTTTTACTCAGGAATTAGTGATGCAGCCTATCACACCATCTCTGTTGC
CTCGTCTAACTAACGTCAGTGTCGGCACACAAACGCCGATCCAGAGGCGGTCTCGCGTGACTTTC
CCCTTTGGTTAGTAGTCCCGGCAGCAGGCGGTCGCGACGGAATGT
Found at i:38802 original size:82 final size:84
Alignment explanation
Indices: 38710--38937 Score: 234
Period size: 82 Copynumber: 2.7 Consensus size: 84
38700 AGAATAGTTT
*
38710 TGAAGCGGTGAT-AGTTCGATGAGTAGTCAGTTACGATAGTTATGAAGTGGTGATTAGTTACGAT
1 TGAAGTGGTGATCAGTTCGATGAGTAGTCAGTTACGATAGTTATG-AGTGGTGATTAGTTACGAT
* * *
38774 -AG-TCTGTTGCGATAGATG
65 GAGATCAGTTACGATAGATA
* * *
38792 TGAAGTGGTGATCAGTTATGATTAGTAGTCAG--ACGATAGTTATGGAGTGGTGATTAGTTTCGA
1 TGAAGTGGTGATCAGTT-CGATGAGTAGTCAGTTACGATAGTTAT-GAGTGGTGATTAGTTACGA
* *
38855 TGAGTAATCAGTTACGTTAGCTA
64 TGAG--ATCAGTTACGATAGATA
* * * * *
38878 TG-AGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTGGCTATGAGTGGTGATCAGTTA
1 TGAAGTGGTGATCAG-TTCGATGAGTAGTCAGTTACGATAGTTATGAGTGGTGATTAGTTA
38938 GTTATGATCA
Statistics
Matches: 119, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
82 40 0.34
83 7 0.06
84 12 0.10
85 23 0.19
86 29 0.24
87 8 0.07
ACGTcount: A:0.26, C:0.09, G:0.31, T:0.34
Consensus pattern (84 bp):
TGAAGTGGTGATCAGTTCGATGAGTAGTCAGTTACGATAGTTATGAGTGGTGATTAGTTACGATG
AGATCAGTTACGATAGATA
Left flanking sequence: Indices 38210 -- 38709
ATCGACAAGTTGCCGCACATCTTGACCATCCACCTCAAGCGGTTTTCGTTTGGGCTGGGCATCGA
GAAGTTGTGCAAGCCCATCCGGTACGGACACGACCTCCAGGTGCCCCGCCAGATCATCTACGGCC
CCCCGTCCGAGGTGGCCAATTTGAGCTACAAGTTGGTGGGGGTGGTGTACCACCACGGCACCTCC
GCGGCCAACGGACACTACACGTGCGACGTGGCGACCCCCGAGTGGGTGCGGGTCGACGACACCGT
GGTGACGAAGATCGAGGCTGAGGAGGTGGTGGACACCCGCGACGAGGCTCGCAACGCCTACATTT
TGGTGTACCAGCGCCAGGAGTAGTTAGCATCTGTAATATAGGCTGAGGTTTGGAGTTATGCGTTT
TAATAGAATAGAGGAGTACTCAAAGGTAGATGGGTAGCAATGAAGGGAGCAGTTAAAGAGTAATT
ATGAAGAGGTGATCAGTTTTGATGAGTAGTCTGTCAGAATAGTTT
Right flanking sequence: Indices 38938 -- 39437
GTTATGATCAGCTACGACAGTGCGATCAGTTACGACACTTACGACACTCAGATCAGTATTGATCA
GTAATGATCAGTAATGATCAGTAATGATCAGTTACGACAGTGGTGATCAGTTACGACAGTTATTA
TCAGTACGACAGCCATGATCAGTAACAATCATTTAATGTTCAGTAACGATCGTTTGATCAGTCGC
GGGATCACCTGAATTACTCGCCACTGCTCGTCTCTTCACGACACTCGTCACGTTGTGGCAACCTT
GTTTTACTCAGGAATTAGTGATGCAGCCTATCACACCATCTCTGTTGCCTCGTCTAACTAACGTC
AGTGTCGGCACACAAACGCCGATCCAGAGGCGGTCTCGCGTGACTTTCCCCTTTGGTTAGTAGTC
CCGGCAGCAGGCGGTCGCGACGGAATGTGAATAGGGGACCGTGTATGAAACTGGCCGGGAATGTC
ACCACGATAGAAAACTAGTGCGATAACACTGAAACGACCATACCG
Found at i:38897 original size:43 final size:43
Alignment explanation
Indices: 38836--38934 Score: 171
Period size: 43 Copynumber: 2.3 Consensus size: 43
38826 GATAGTTATG
* *
38836 GAGTGGTGATTAGTTTCGATGAGTAATCAGTTACGTTAGCTAT
1 GAGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTAGCTAT
*
38879 GAGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTGGCTAT
1 GAGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTAGCTAT
38922 GAGTGGTGATCAG
1 GAGTGGTGATCAG
38935 TTAGTTATGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.24, C:0.11, G:0.31, T:0.33
Consensus pattern (43 bp):
GAGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTAGCTAT
Left flanking sequence: Indices 38336 -- 38835
GGCCCCCCGTCCGAGGTGGCCAATTTGAGCTACAAGTTGGTGGGGGTGGTGTACCACCACGGCAC
CTCCGCGGCCAACGGACACTACACGTGCGACGTGGCGACCCCCGAGTGGGTGCGGGTCGACGACA
CCGTGGTGACGAAGATCGAGGCTGAGGAGGTGGTGGACACCCGCGACGAGGCTCGCAACGCCTAC
ATTTTGGTGTACCAGCGCCAGGAGTAGTTAGCATCTGTAATATAGGCTGAGGTTTGGAGTTATGC
GTTTTAATAGAATAGAGGAGTACTCAAAGGTAGATGGGTAGCAATGAAGGGAGCAGTTAAAGAGT
AATTATGAAGAGGTGATCAGTTTTGATGAGTAGTCTGTCAGAATAGTTTTGAAGCGGTGATAGTT
CGATGAGTAGTCAGTTACGATAGTTATGAAGTGGTGATTAGTTACGATAGTCTGTTGCGATAGAT
GTGAAGTGGTGATCAGTTATGATTAGTAGTCAGACGATAGTTATG
Right flanking sequence: Indices 38935 -- 39434
TTAGTTATGATCAGCTACGACAGTGCGATCAGTTACGACACTTACGACACTCAGATCAGTATTGA
TCAGTAATGATCAGTAATGATCAGTAATGATCAGTTACGACAGTGGTGATCAGTTACGACAGTTA
TTATCAGTACGACAGCCATGATCAGTAACAATCATTTAATGTTCAGTAACGATCGTTTGATCAGT
CGCGGGATCACCTGAATTACTCGCCACTGCTCGTCTCTTCACGACACTCGTCACGTTGTGGCAAC
CTTGTTTTACTCAGGAATTAGTGATGCAGCCTATCACACCATCTCTGTTGCCTCGTCTAACTAAC
GTCAGTGTCGGCACACAAACGCCGATCCAGAGGCGGTCTCGCGTGACTTTCCCCTTTGGTTAGTA
GTCCCGGCAGCAGGCGGTCGCGACGGAATGTGAATAGGGGACCGTGTATGAAACTGGCCGGGAAT
GTCACCACGATAGAAAACTAGTGCGATAACACTGAAACGACCATA
Found at i:39003 original size:10 final size:10
Alignment explanation
Indices: 38988--39034 Score: 85
Period size: 10 Copynumber: 4.7 Consensus size: 10
38978 ACGACACTCA
*
38988 GATCAGTATT
1 GATCAGTAAT
38998 GATCAGTAAT
1 GATCAGTAAT
39008 GATCAGTAAT
1 GATCAGTAAT
39018 GATCAGTAAT
1 GATCAGTAAT
39028 GATCAGT
1 GATCAGT
39035 TACGACAGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 36 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (10 bp):
GATCAGTAAT
Left flanking sequence: Indices 38488 -- 38987
TGAGGAGGTGGTGGACACCCGCGACGAGGCTCGCAACGCCTACATTTTGGTGTACCAGCGCCAGG
AGTAGTTAGCATCTGTAATATAGGCTGAGGTTTGGAGTTATGCGTTTTAATAGAATAGAGGAGTA
CTCAAAGGTAGATGGGTAGCAATGAAGGGAGCAGTTAAAGAGTAATTATGAAGAGGTGATCAGTT
TTGATGAGTAGTCTGTCAGAATAGTTTTGAAGCGGTGATAGTTCGATGAGTAGTCAGTTACGATA
GTTATGAAGTGGTGATTAGTTACGATAGTCTGTTGCGATAGATGTGAAGTGGTGATCAGTTATGA
TTAGTAGTCAGACGATAGTTATGGAGTGGTGATTAGTTTCGATGAGTAATCAGTTACGTTAGCTA
TGAGTGGTGATCAGCTTCGATGAGTAATCAGTTACGTTGGCTATGAGTGGTGATCAGTTAGTTAT
GATCAGCTACGACAGTGCGATCAGTTACGACACTTACGACACTCA
Right flanking sequence: Indices 39035 -- 39534
TACGACAGTGGTGATCAGTTACGACAGTTATTATCAGTACGACAGCCATGATCAGTAACAATCAT
TTAATGTTCAGTAACGATCGTTTGATCAGTCGCGGGATCACCTGAATTACTCGCCACTGCTCGTC
TCTTCACGACACTCGTCACGTTGTGGCAACCTTGTTTTACTCAGGAATTAGTGATGCAGCCTATC
ACACCATCTCTGTTGCCTCGTCTAACTAACGTCAGTGTCGGCACACAAACGCCGATCCAGAGGCG
GTCTCGCGTGACTTTCCCCTTTGGTTAGTAGTCCCGGCAGCAGGCGGTCGCGACGGAATGTGAAT
AGGGGACCGTGTATGAAACTGGCCGGGAATGTCACCACGATAGAAAACTAGTGCGATAACACTGA
AACGACCATACCGAGCCCATAATAAATTCTCCATTATTTTCTATCCCCTTCTTTGCTCTCCGTCC
TTATCTTTCTTTCTCTCTTATCTTCACAATTTTTGTAATTTTTTC
Found at i:39091 original size:18 final size:19
Alignment explanation
Indices: 39001--39090 Score: 83
Period size: 19 Copynumber: 4.7 Consensus size: 19
38991 CAGTATTGAT
* * *
39001 CAGTAATGATCAGTAATGA
1 CAGTCATGATCAGTTACGA
*
39020 TCAGTAATGATCAGTTACGA
1 -CAGTCATGATCAGTTACGA
**
39040 CAGTGGTGATCAGTTACGA
1 CAGTCATGATCAGTTACGA
* *
39059 CAGTTATTATCAG-TACGA
1 CAGTCATGATCAGTTACGA
*
39077 CAGCCATGATCAGT
1 CAGTCATGATCAGT
39091 AACAATCATT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
18 15 0.25
19 27 0.46
20 17 0.29
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (19 bp):
CAGTCATGATCAGTTACGA
Left flanking sequence: Indices 38501 -- 39000
GACACCCGCGACGAGGCTCGCAACGCCTACATTTTGGTGTACCAGCGCCAGGAGTAGTTAGCATC
TGTAATATAGGCTGAGGTTTGGAGTTATGCGTTTTAATAGAATAGAGGAGTACTCAAAGGTAGAT
GGGTAGCAATGAAGGGAGCAGTTAAAGAGTAATTATGAAGAGGTGATCAGTTTTGATGAGTAGTC
TGTCAGAATAGTTTTGAAGCGGTGATAGTTCGATGAGTAGTCAGTTACGATAGTTATGAAGTGGT
GATTAGTTACGATAGTCTGTTGCGATAGATGTGAAGTGGTGATCAGTTATGATTAGTAGTCAGAC
GATAGTTATGGAGTGGTGATTAGTTTCGATGAGTAATCAGTTACGTTAGCTATGAGTGGTGATCA
GCTTCGATGAGTAATCAGTTACGTTGGCTATGAGTGGTGATCAGTTAGTTATGATCAGCTACGAC
AGTGCGATCAGTTACGACACTTACGACACTCAGATCAGTATTGAT
Right flanking sequence: Indices 39091 -- 39590
AACAATCATTTAATGTTCAGTAACGATCGTTTGATCAGTCGCGGGATCACCTGAATTACTCGCCA
CTGCTCGTCTCTTCACGACACTCGTCACGTTGTGGCAACCTTGTTTTACTCAGGAATTAGTGATG
CAGCCTATCACACCATCTCTGTTGCCTCGTCTAACTAACGTCAGTGTCGGCACACAAACGCCGAT
CCAGAGGCGGTCTCGCGTGACTTTCCCCTTTGGTTAGTAGTCCCGGCAGCAGGCGGTCGCGACGG
AATGTGAATAGGGGACCGTGTATGAAACTGGCCGGGAATGTCACCACGATAGAAAACTAGTGCGA
TAACACTGAAACGACCATACCGAGCCCATAATAAATTCTCCATTATTTTCTATCCCCTTCTTTGC
TCTCCGTCCTTATCTTTCTTTCTCTCTTATCTTCACAATTTTTGTAATTTTTTCACGAATTAGGC
AGACGCACCAGACGTCACCACAACAGAAGTTCGAGTCGCAGGACC
Found at i:42538 original size:15 final size:15
Alignment explanation
Indices: 42515--42546 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
42505 TGGCACGGGG
*
42515 TTAATGTCAGCGTGA
1 TTAAAGTCAGCGTGA
42530 TTAAAGTCAGCGTGA
1 TTAAAGTCAGCGTGA
42545 TT
1 TT
42547 GGTGTCTGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (15 bp):
TTAAAGTCAGCGTGA
Left flanking sequence: Indices 42015 -- 42514
CCCCGGGCGCCCATCGGACCCTGCACTAGGCCATGCCCGTGGGAGGGACCACTGCTCCGCGGGCG
CCTTTGCATGGTGCAAGTGAAGTGTGGAGTGACTCTCATGCTTAGCCGGGAAACCACGAGATAGG
CACAATCAGACAGACAACCGGTAGACGAGCCTGGCGAAAACACGACGGCAGACGAGCAAACACGA
GAACAATCACGGAATACGAACTGGCTCGTTTGAGCGGTTTTGTGGCTCGTGTAGTCAGAGATCTA
CGGTGTGGAGAACGCGATAACAGAGCGATGAGGATGGACCATACAGCGAGCACATGATTGCTCTG
GGGCGTTCCTGACTCTAAACGTGAAATTGTCAGACGCAACCGCTGTAAGGTGGGCCGAGGCGGCG
CACAAATTCATCTAAATATAGTACATATCGGTATATTACGTGCATTGACAGACTAAATCTTGCTG
TTTTCTTGGTTCATCGGGCGAATTCTTGGTTTGCTTGGCACGGGG
Right flanking sequence: Indices 42547 -- 43046
GGTGTCTGTCATGTGGATGGAACGGCTGACTCCCGGAGCCTGTGATAATGGTAATCAGGGAAGAG
CTCGTGGAAGACTAGTAGTGGACTAGCGGTGAAAGATGCAAAAGGGGTTAACAAAGGGGTTTACA
AAAGGGGTTTACATGCGTGTTAGGACGCTTACCCCGAGTAGATGAACCTCTCGACTCCCGATTAC
TCAAGGCGTCTGCAGAAAGCACTCAGCTTATCTTGTGACCATCTCATATCATATCTTGGCACGTG
GTTCTGAGCACGCGATCGAACACACGTGACGTTATCCATCCCCCGTCTCTGGACTTCAACGTCTC
TGGACTCAAACAGGCGGCTGGTTCTGGGAAGACTGGTACACCGCAAACACCGACGACGGGAAGAG
CGAGTGGATCACCGCCAACTGCATCTCCAACGCCCGCAGGTTTTCCCGGATCGTCTCGATGGGGG
AGTCGCCCAGAATGAGTGCGTCGAGCTCGTCCTCTATCTGGGTGA
Found at i:42669 original size:12 final size:13
Alignment explanation
Indices: 42650--42685 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
42640 GTGAAAGATG
42650 CAAAAGGGGTTAA
1 CAAAAGGGGTTAA
*
42663 C-AAAGGGGTTTA
1 CAAAAGGGGTTAA
42675 CAAAAGGGGTT
1 CAAAAGGGGTT
42686 TACATGCGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.39, C:0.08, G:0.33, T:0.19
Consensus pattern (13 bp):
CAAAAGGGGTTAA
Left flanking sequence: Indices 42150 -- 42649
TCAGACAGACAACCGGTAGACGAGCCTGGCGAAAACACGACGGCAGACGAGCAAACACGAGAACA
ATCACGGAATACGAACTGGCTCGTTTGAGCGGTTTTGTGGCTCGTGTAGTCAGAGATCTACGGTG
TGGAGAACGCGATAACAGAGCGATGAGGATGGACCATACAGCGAGCACATGATTGCTCTGGGGCG
TTCCTGACTCTAAACGTGAAATTGTCAGACGCAACCGCTGTAAGGTGGGCCGAGGCGGCGCACAA
ATTCATCTAAATATAGTACATATCGGTATATTACGTGCATTGACAGACTAAATCTTGCTGTTTTC
TTGGTTCATCGGGCGAATTCTTGGTTTGCTTGGCACGGGGTTAATGTCAGCGTGATTAAAGTCAG
CGTGATTGGTGTCTGTCATGTGGATGGAACGGCTGACTCCCGGAGCCTGTGATAATGGTAATCAG
GGAAGAGCTCGTGGAAGACTAGTAGTGGACTAGCGGTGAAAGATG
Right flanking sequence: Indices 42686 -- 43185
TACATGCGTGTTAGGACGCTTACCCCGAGTAGATGAACCTCTCGACTCCCGATTACTCAAGGCGT
CTGCAGAAAGCACTCAGCTTATCTTGTGACCATCTCATATCATATCTTGGCACGTGGTTCTGAGC
ACGCGATCGAACACACGTGACGTTATCCATCCCCCGTCTCTGGACTTCAACGTCTCTGGACTCAA
ACAGGCGGCTGGTTCTGGGAAGACTGGTACACCGCAAACACCGACGACGGGAAGAGCGAGTGGAT
CACCGCCAACTGCATCTCCAACGCCCGCAGGTTTTCCCGGATCGTCTCGATGGGGGAGTCGCCCA
GAATGAGTGCGTCGAGCTCGTCCTCTATCTGGGTGAGGTATTGCACGGTGAGGCGGTACTGCTCG
AGGATCTTGGCCTCTGTGTCGCTGAGCAGCGGGTGTATAGTGTAGTCTGGGGCGGTAGACATGTT
GTTTATTTTGAGATTTGGTACTGCATGAAGATAACGGTCGCGTAG
Found at i:42680 original size:13 final size:13
Alignment explanation
Indices: 42650--42689 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
42640 GTGAAAGATG
*
42650 CAAAAGGGGTTAA
1 CAAAAGGGGTTTA
42663 C-AAAGGGGTTTA
1 CAAAAGGGGTTTA
42675 CAAAAGGGGTTTA
1 CAAAAGGGGTTTA
42688 CA
1 CA
42690 TGCGTGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.40, C:0.10, G:0.30, T:0.20
Consensus pattern (13 bp):
CAAAAGGGGTTTA
Left flanking sequence: Indices 42150 -- 42649
TCAGACAGACAACCGGTAGACGAGCCTGGCGAAAACACGACGGCAGACGAGCAAACACGAGAACA
ATCACGGAATACGAACTGGCTCGTTTGAGCGGTTTTGTGGCTCGTGTAGTCAGAGATCTACGGTG
TGGAGAACGCGATAACAGAGCGATGAGGATGGACCATACAGCGAGCACATGATTGCTCTGGGGCG
TTCCTGACTCTAAACGTGAAATTGTCAGACGCAACCGCTGTAAGGTGGGCCGAGGCGGCGCACAA
ATTCATCTAAATATAGTACATATCGGTATATTACGTGCATTGACAGACTAAATCTTGCTGTTTTC
TTGGTTCATCGGGCGAATTCTTGGTTTGCTTGGCACGGGGTTAATGTCAGCGTGATTAAAGTCAG
CGTGATTGGTGTCTGTCATGTGGATGGAACGGCTGACTCCCGGAGCCTGTGATAATGGTAATCAG
GGAAGAGCTCGTGGAAGACTAGTAGTGGACTAGCGGTGAAAGATG
Right flanking sequence: Indices 42690 -- 43189
TGCGTGTTAGGACGCTTACCCCGAGTAGATGAACCTCTCGACTCCCGATTACTCAAGGCGTCTGC
AGAAAGCACTCAGCTTATCTTGTGACCATCTCATATCATATCTTGGCACGTGGTTCTGAGCACGC
GATCGAACACACGTGACGTTATCCATCCCCCGTCTCTGGACTTCAACGTCTCTGGACTCAAACAG
GCGGCTGGTTCTGGGAAGACTGGTACACCGCAAACACCGACGACGGGAAGAGCGAGTGGATCACC
GCCAACTGCATCTCCAACGCCCGCAGGTTTTCCCGGATCGTCTCGATGGGGGAGTCGCCCAGAAT
GAGTGCGTCGAGCTCGTCCTCTATCTGGGTGAGGTATTGCACGGTGAGGCGGTACTGCTCGAGGA
TCTTGGCCTCTGTGTCGCTGAGCAGCGGGTGTATAGTGTAGTCTGGGGCGGTAGACATGTTGTTT
ATTTTGAGATTTGGTACTGCATGAAGATAACGGTCGCGTAGGAAG
Found at i:43251 original size:12 final size:13
Alignment explanation
Indices: 43235--43270 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
43225 GGAGGATAAA
43235 AATTAGGACGTGG
1 AATTAGGACGTGG
43248 -ATTAGGACG-GG
1 AATTAGGACGTGG
43259 AATTAGGACGTG
1 AATTAGGACGTG
43271 AAGGTGGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 18 0.86
13 1 0.05
ACGTcount: A:0.31, C:0.08, G:0.39, T:0.22
Consensus pattern (13 bp):
AATTAGGACGTGG
Left flanking sequence: Indices 42735 -- 43234
CGATTACTCAAGGCGTCTGCAGAAAGCACTCAGCTTATCTTGTGACCATCTCATATCATATCTTG
GCACGTGGTTCTGAGCACGCGATCGAACACACGTGACGTTATCCATCCCCCGTCTCTGGACTTCA
ACGTCTCTGGACTCAAACAGGCGGCTGGTTCTGGGAAGACTGGTACACCGCAAACACCGACGACG
GGAAGAGCGAGTGGATCACCGCCAACTGCATCTCCAACGCCCGCAGGTTTTCCCGGATCGTCTCG
ATGGGGGAGTCGCCCAGAATGAGTGCGTCGAGCTCGTCCTCTATCTGGGTGAGGTATTGCACGGT
GAGGCGGTACTGCTCGAGGATCTTGGCCTCTGTGTCGCTGAGCAGCGGGTGTATAGTGTAGTCTG
GGGCGGTAGACATGTTGTTTATTTTGAGATTTGGTACTGCATGAAGATAACGGTCGCGTAGGAAG
AAGGAGGAGGAGAGGGAGGACGAGAAAGACGAGAAGGAGGATAAA
Right flanking sequence: Indices 43271 -- 43770
AAGGTGGATAAGAATTAGGACGAGAAATAAAACGAGAATTAAAACGAGAATAAAGATGAGAAGTA
AGAGGAGAAGTAGGACGAGAAGTAGGACGAGAAGTAGGACTAGAAGGAGACCAAGAGAAGGAACC
CCAGATGAAGCCAAGAGAAAGCCAAGAGAACGAGGCCAAGAAAAGGGCCAAAAGATAGTAGGGAA
CTCTCTGGGCATTGTGATAGGAGGTATGCAATTAATGGGTTTTCTATGTGTGGCTACTGCAATGG
AGATAGCTCAATGCTTTACTGTAGGTGATAATTAGGTGCTGGCTCTCGTTCAGACTCAAAGGCCT
AGAAGTCTTTAAACCAGCAGTCGTTGCCTACCCGGCGCTGACCACGTCCTACGGCGTATCCCTCG
GCAAAACCCGCCGCGTAGTCCTGGTACCACTGCGAGTGGTAGCAGTCGTCAAACGGGTCCTCGCT
CTCGTGGACGGGGATGCTGCTCTCGTCACTGGCCATCTCCAGCTC
Found at i:43310 original size:48 final size:48
Alignment explanation
Indices: 43217--43320 Score: 109
Period size: 48 Copynumber: 2.2 Consensus size: 48
43207 GGACGAGAAA
* * * ** *
43217 GACGAGAAGGAGGATAAAAATTAGGACGTGGATTAGGACGGGAATTAG
1 GACGAGAAGGAGGATAAAAATTAGGACGAGAAATAAAACGAGAATTAG
* * * *
43265 GACGTGAAGGTGGATAAGAATTAGGACGAGAAATAAAACGAGAATTAA
1 GACGAGAAGGAGGATAAAAATTAGGACGAGAAATAAAACGAGAATTAG
*
43313 AACGAGAA
1 GACGAGAA
43321 TAAAGATGAG
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.45, C:0.07, G:0.33, T:0.15
Consensus pattern (48 bp):
GACGAGAAGGAGGATAAAAATTAGGACGAGAAATAAAACGAGAATTAG
Left flanking sequence: Indices 42717 -- 43216
GATGAACCTCTCGACTCCCGATTACTCAAGGCGTCTGCAGAAAGCACTCAGCTTATCTTGTGACC
ATCTCATATCATATCTTGGCACGTGGTTCTGAGCACGCGATCGAACACACGTGACGTTATCCATC
CCCCGTCTCTGGACTTCAACGTCTCTGGACTCAAACAGGCGGCTGGTTCTGGGAAGACTGGTACA
CCGCAAACACCGACGACGGGAAGAGCGAGTGGATCACCGCCAACTGCATCTCCAACGCCCGCAGG
TTTTCCCGGATCGTCTCGATGGGGGAGTCGCCCAGAATGAGTGCGTCGAGCTCGTCCTCTATCTG
GGTGAGGTATTGCACGGTGAGGCGGTACTGCTCGAGGATCTTGGCCTCTGTGTCGCTGAGCAGCG
GGTGTATAGTGTAGTCTGGGGCGGTAGACATGTTGTTTATTTTGAGATTTGGTACTGCATGAAGA
TAACGGTCGCGTAGGAAGAAGGAGGAGGAGAGGGAGGACGAGAAA
Right flanking sequence: Indices 43321 -- 43820
TAAAGATGAGAAGTAAGAGGAGAAGTAGGACGAGAAGTAGGACGAGAAGTAGGACTAGAAGGAGA
CCAAGAGAAGGAACCCCAGATGAAGCCAAGAGAAAGCCAAGAGAACGAGGCCAAGAAAAGGGCCA
AAAGATAGTAGGGAACTCTCTGGGCATTGTGATAGGAGGTATGCAATTAATGGGTTTTCTATGTG
TGGCTACTGCAATGGAGATAGCTCAATGCTTTACTGTAGGTGATAATTAGGTGCTGGCTCTCGTT
CAGACTCAAAGGCCTAGAAGTCTTTAAACCAGCAGTCGTTGCCTACCCGGCGCTGACCACGTCCT
ACGGCGTATCCCTCGGCAAAACCCGCCGCGTAGTCCTGGTACCACTGCGAGTGGTAGCAGTCGTC
AAACGGGTCCTCGCTCTCGTGGACGGGGATGCTGCTCTCGTCACTGGCCATCTCCAGCTCGGTAT
CGGGGTTCCGGAGACTCCCCGAAAACGAGATCGGTGCCGAGAGCT
Found at i:43338 original size:12 final size:12
Alignment explanation
Indices: 43289--43381 Score: 80
Period size: 12 Copynumber: 7.8 Consensus size: 12
43279 TAAGAATTAG
*
43289 GACGAGAAATAA
1 GACGAGAAGTAA
* *
43301 AACGAGAATTAA
1 GACGAGAAGTAA
*
43313 AACGAGAA-TAAA
1 GACGAGAAGT-AA
*
43325 GATGAGAAGTAA
1 GACGAGAAGTAA
* *
43337 GAGGAGAAGTAG
1 GACGAGAAGTAA
*
43349 GACGAGAAGTAG
1 GACGAGAAGTAA
*
43361 GACGAGAAGTAG
1 GACGAGAAGTAA
*
43373 GACTAGAAG
1 GACGAGAAG
43382 GAGACCAAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
11 1 0.01
12 69 0.97
13 1 0.01
ACGTcount: A:0.51, C:0.06, G:0.32, T:0.11
Consensus pattern (12 bp):
GACGAGAAGTAA
Left flanking sequence: Indices 42789 -- 43288
ATCATATCTTGGCACGTGGTTCTGAGCACGCGATCGAACACACGTGACGTTATCCATCCCCCGTC
TCTGGACTTCAACGTCTCTGGACTCAAACAGGCGGCTGGTTCTGGGAAGACTGGTACACCGCAAA
CACCGACGACGGGAAGAGCGAGTGGATCACCGCCAACTGCATCTCCAACGCCCGCAGGTTTTCCC
GGATCGTCTCGATGGGGGAGTCGCCCAGAATGAGTGCGTCGAGCTCGTCCTCTATCTGGGTGAGG
TATTGCACGGTGAGGCGGTACTGCTCGAGGATCTTGGCCTCTGTGTCGCTGAGCAGCGGGTGTAT
AGTGTAGTCTGGGGCGGTAGACATGTTGTTTATTTTGAGATTTGGTACTGCATGAAGATAACGGT
CGCGTAGGAAGAAGGAGGAGGAGAGGGAGGACGAGAAAGACGAGAAGGAGGATAAAAATTAGGAC
GTGGATTAGGACGGGAATTAGGACGTGAAGGTGGATAAGAATTAG
Right flanking sequence: Indices 43382 -- 43881
GAGACCAAGAGAAGGAACCCCAGATGAAGCCAAGAGAAAGCCAAGAGAACGAGGCCAAGAAAAGG
GCCAAAAGATAGTAGGGAACTCTCTGGGCATTGTGATAGGAGGTATGCAATTAATGGGTTTTCTA
TGTGTGGCTACTGCAATGGAGATAGCTCAATGCTTTACTGTAGGTGATAATTAGGTGCTGGCTCT
CGTTCAGACTCAAAGGCCTAGAAGTCTTTAAACCAGCAGTCGTTGCCTACCCGGCGCTGACCACG
TCCTACGGCGTATCCCTCGGCAAAACCCGCCGCGTAGTCCTGGTACCACTGCGAGTGGTAGCAGT
CGTCAAACGGGTCCTCGCTCTCGTGGACGGGGATGCTGCTCTCGTCACTGGCCATCTCCAGCTCG
GTATCGGGGTTCCGGAGACTCCCCGAAAACGAGATCGGTGCCGAGAGCTTGAGGGTGTTTTCAGC
AGGCTGGCTAGGGTCGGATTCCTCGTCGTCGCTGAAAAAGTCCGA
Found at i:45208 original size:14 final size:14
Alignment explanation
Indices: 45189--45234 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
45179 GGGGTTGTTG
45189 GAAGTTGGAGTGGA
1 GAAGTTGGAGTGGA
45203 GAAGTTGGAGTGGA
1 GAAGTTGGAGTGGA
*
45217 GAAGTTGGTGTGGA
1 GAAGTTGGAGTGGA
45231 GAAG
1 GAAG
45235 GTTGATGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.50, T:0.22
Consensus pattern (14 bp):
GAAGTTGGAGTGGA
Left flanking sequence: Indices 44689 -- 45188
CGCGAAATACGACGGGTCCGCCTCGTAATCAACCATGGGGAAGTGGTCGATCGCTGGGCTATTTA
TAGTTAATGCCGCAGGCTATGCAGGGCCCCTGAGCGATTGCACGAGATAGTGTCGTGGCCGCCAA
GACGGCGTTCTGGGGCCGCGGGAAGCGGGAGCGGGGTCTACGACGGGCCCAGGGGCGACTGGGAC
GCGTTTTTGGTGGTCTAGGGCCCGCTTTTCCCGGTTTTTACTCATGGGGTAGACGCGTCGGGAGC
ATTACGAACCGTCACCCCACGGCTGGAATGATGCACTGTCGTCACCGGGTTTATTATCGCTACAC
GAGGGAGAGAATCGGGACAAAGGCGCTTGGGCAGGGAACAATGGGAGAGATCAGGAACAAACCTT
ATTTGGGCGGTTCCCGCGATTGTGGCGTTTGATGAAGAGGCTGGTGAACGTTGGTCTAATACGGT
GAATTCGCAACCAATTAGTGAGTTGACAACGGGCAGGGGTTGTTG
Right flanking sequence: Indices 45235 -- 45734
GTTGATGTTTATCGAGTATGTTTACGGTTTTGGTACAGAGACGCAGAACAGCCCACTGGTCGACT
TTCCGGGTTTGGTCCGGTTCTCTACGTGTCGCCCTGTCTCGTCCAATAGTGCCTGGGCTATTGCC
AGCTCGTCAATCACGCTAGTGTCTGGACCCCTGAGCTGTATGCAGGCAGCAGACATCAGCGAAAG
ATGGTCCCAACGTGGCGCTCTTCGAGACGAGATACCGGAAAAAGAAGAGCACGGTTGTGTTTAGC
GAGACAAAACCACCCAAATGAGCCGGTTTTCCAGCTGTCAGGGGGTATTCTAAACCCACTCATAG
TTCCCCATGCAGGCGGCCTCATCCCACCCACGGACCTTCCCACTCTCTACCTTCCACTCTCCAAC
CAGGGGCTCACGTTAGCAACCAGTCCGTAGAACACACACACACAACAACGACCATCCACATTCAC
ACACTCTGAAAACACCAACAACCAAACTCACATTACATCCACATT
Found at i:45859 original size:12 final size:12
Alignment explanation
Indices: 45844--45887 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
45834 TACAACCACA
45844 CCACATTCTTAC
1 CCACATTCTTAC
45856 CCACATTCTTAC
1 CCACATTCTTAC
**
45868 CCACATTCACAC
1 CCACATTCTTAC
45880 CCACATTC
1 CCACATTC
45888 CCAACCACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.27, C:0.45, G:0.00, T:0.27
Consensus pattern (12 bp):
CCACATTCTTAC
Left flanking sequence: Indices 45344 -- 45843
AATAGTGCCTGGGCTATTGCCAGCTCGTCAATCACGCTAGTGTCTGGACCCCTGAGCTGTATGCA
GGCAGCAGACATCAGCGAAAGATGGTCCCAACGTGGCGCTCTTCGAGACGAGATACCGGAAAAAG
AAGAGCACGGTTGTGTTTAGCGAGACAAAACCACCCAAATGAGCCGGTTTTCCAGCTGTCAGGGG
GTATTCTAAACCCACTCATAGTTCCCCATGCAGGCGGCCTCATCCCACCCACGGACCTTCCCACT
CTCTACCTTCCACTCTCCAACCAGGGGCTCACGTTAGCAACCAGTCCGTAGAACACACACACACA
ACAACGACCATCCACATTCACACACTCTGAAAACACCAACAACCAAACTCACATTACATCCACAT
TCTCACTCTGACAACAACGACCACACCCACATTCTTACTCACATTCACAAACGTTGACAACGACC
ACACCCATAACCCATTCACACACTCTGGAAACACCTACAACCACA
Right flanking sequence: Indices 45888 -- 46387
CCAACCACCTAGTCAATCCCATACACCCACCTAGTCGAACCCATACACCAACCTGGCCAAACCCG
AACACCAACCGTCAAACCAAGTCACACCTAACACCCATTAACCCCTTCTCCTAATCTTTCACTCC
AACCCACTTCTCCTAATCCTTCACCTACCCTCACCCACTTCTCCTACTTCCTTCTCCTAATCTTT
CTCTCCATTCCTATTACCATGCTATACACTAATCGTCTTCCAGATGTTCAACCCCTCGCCGCCCG
TCAGCACCAACGCACCCGGGATCTGCCGGTGCCACCGCACGTCCTTGACATCCCTCTGCCAGTGG
ACAAACAACAACTGCGGGGGAATGTCGCGGAGCTGGGCCAGCTGCGCCTTCTGCTGCGAGATCTC
CTCGTCGTCCGCCTCCACGGAAAGGTCCCAGAGCGTCACCGTGTTGTCCTCGGACAGCACCGCCA
CCACCGACTCGTCCAACGGGTTGAACAGGATGGCGGTCACGGGCA
Found at i:45895 original size:24 final size:24
Alignment explanation
Indices: 45843--45895 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
45833 CTACAACCAC
** **
45843 ACCACATTCTTACCCACATTCTTA
1 ACCACATTCACACCCACATTCCCA
*
45867 CCCACATTCACACCCACATTCCCA
1 ACCACATTCACACCCACATTCCCA
45891 ACCAC
1 ACCAC
45896 CTAGTCAATC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.47, G:0.00, T:0.23
Consensus pattern (24 bp):
ACCACATTCACACCCACATTCCCA
Left flanking sequence: Indices 45343 -- 45842
CAATAGTGCCTGGGCTATTGCCAGCTCGTCAATCACGCTAGTGTCTGGACCCCTGAGCTGTATGC
AGGCAGCAGACATCAGCGAAAGATGGTCCCAACGTGGCGCTCTTCGAGACGAGATACCGGAAAAA
GAAGAGCACGGTTGTGTTTAGCGAGACAAAACCACCCAAATGAGCCGGTTTTCCAGCTGTCAGGG
GGTATTCTAAACCCACTCATAGTTCCCCATGCAGGCGGCCTCATCCCACCCACGGACCTTCCCAC
TCTCTACCTTCCACTCTCCAACCAGGGGCTCACGTTAGCAACCAGTCCGTAGAACACACACACAC
AACAACGACCATCCACATTCACACACTCTGAAAACACCAACAACCAAACTCACATTACATCCACA
TTCTCACTCTGACAACAACGACCACACCCACATTCTTACTCACATTCACAAACGTTGACAACGAC
CACACCCATAACCCATTCACACACTCTGGAAACACCTACAACCAC
Right flanking sequence: Indices 45896 -- 46395
CTAGTCAATCCCATACACCCACCTAGTCGAACCCATACACCAACCTGGCCAAACCCGAACACCAA
CCGTCAAACCAAGTCACACCTAACACCCATTAACCCCTTCTCCTAATCTTTCACTCCAACCCACT
TCTCCTAATCCTTCACCTACCCTCACCCACTTCTCCTACTTCCTTCTCCTAATCTTTCTCTCCAT
TCCTATTACCATGCTATACACTAATCGTCTTCCAGATGTTCAACCCCTCGCCGCCCGTCAGCACC
AACGCACCCGGGATCTGCCGGTGCCACCGCACGTCCTTGACATCCCTCTGCCAGTGGACAAACAA
CAACTGCGGGGGAATGTCGCGGAGCTGGGCCAGCTGCGCCTTCTGCTGCGAGATCTCCTCGTCGT
CCGCCTCCACGGAAAGGTCCCAGAGCGTCACCGTGTTGTCCTCGGACAGCACCGCCACCACCGAC
TCGTCCAACGGGTTGAACAGGATGGCGGTCACGGGCAGCTGGTGG
Found at i:45917 original size:22 final size:22
Alignment explanation
Indices: 45892--45941 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
45882 ACATTCCCAA
45892 CCACCTAGTC-AATCCCATACAC
1 CCACCTAGTCGAA-CCCATACAC
45914 CCACCTAGTCGAACCCATACAC
1 CCACCTAGTCGAACCCATACAC
*
45936 CAACCT
1 CCACCT
45942 GGCCAAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.32, C:0.46, G:0.06, T:0.16
Consensus pattern (22 bp):
CCACCTAGTCGAACCCATACAC
Left flanking sequence: Indices 45392 -- 45891
CCCCTGAGCTGTATGCAGGCAGCAGACATCAGCGAAAGATGGTCCCAACGTGGCGCTCTTCGAGA
CGAGATACCGGAAAAAGAAGAGCACGGTTGTGTTTAGCGAGACAAAACCACCCAAATGAGCCGGT
TTTCCAGCTGTCAGGGGGTATTCTAAACCCACTCATAGTTCCCCATGCAGGCGGCCTCATCCCAC
CCACGGACCTTCCCACTCTCTACCTTCCACTCTCCAACCAGGGGCTCACGTTAGCAACCAGTCCG
TAGAACACACACACACAACAACGACCATCCACATTCACACACTCTGAAAACACCAACAACCAAAC
TCACATTACATCCACATTCTCACTCTGACAACAACGACCACACCCACATTCTTACTCACATTCAC
AAACGTTGACAACGACCACACCCATAACCCATTCACACACTCTGGAAACACCTACAACCACACCA
CATTCTTACCCACATTCTTACCCACATTCACACCCACATTCCCAA
Right flanking sequence: Indices 45942 -- 46441
GGCCAAACCCGAACACCAACCGTCAAACCAAGTCACACCTAACACCCATTAACCCCTTCTCCTAA
TCTTTCACTCCAACCCACTTCTCCTAATCCTTCACCTACCCTCACCCACTTCTCCTACTTCCTTC
TCCTAATCTTTCTCTCCATTCCTATTACCATGCTATACACTAATCGTCTTCCAGATGTTCAACCC
CTCGCCGCCCGTCAGCACCAACGCACCCGGGATCTGCCGGTGCCACCGCACGTCCTTGACATCCC
TCTGCCAGTGGACAAACAACAACTGCGGGGGAATGTCGCGGAGCTGGGCCAGCTGCGCCTTCTGC
TGCGAGATCTCCTCGTCGTCCGCCTCCACGGAAAGGTCCCAGAGCGTCACCGTGTTGTCCTCGGA
CAGCACCGCCACCACCGACTCGTCCAACGGGTTGAACAGGATGGCGGTCACGGGCAGCTGGTGGA
ACTCGTAGTGGGCCACCGGCAGCGGGGCCGGGCCCTGGCCAAAGT
Found at i:45950 original size:22 final size:22
Alignment explanation
Indices: 45894--45962 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
45884 ATTCCCAACC
* * *
45894 ACCTAGTCAATCCCATACACCC
1 ACCTAGCCAAACCCATACACCA
* *
45916 ACCTAGTCGAACCCATACACCA
1 ACCTAGCCAAACCCATACACCA
*
45938 ACCTGGCCAAACCCGA-ACACCA
1 ACCTAGCCAAACCC-ATACACCA
45960 ACC
1 ACC
45963 GTCAAACCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
22 39 0.98
23 1 0.03
ACGTcount: A:0.35, C:0.45, G:0.09, T:0.12
Consensus pattern (22 bp):
ACCTAGCCAAACCCATACACCA
Left flanking sequence: Indices 45394 -- 45893
CCTGAGCTGTATGCAGGCAGCAGACATCAGCGAAAGATGGTCCCAACGTGGCGCTCTTCGAGACG
AGATACCGGAAAAAGAAGAGCACGGTTGTGTTTAGCGAGACAAAACCACCCAAATGAGCCGGTTT
TCCAGCTGTCAGGGGGTATTCTAAACCCACTCATAGTTCCCCATGCAGGCGGCCTCATCCCACCC
ACGGACCTTCCCACTCTCTACCTTCCACTCTCCAACCAGGGGCTCACGTTAGCAACCAGTCCGTA
GAACACACACACACAACAACGACCATCCACATTCACACACTCTGAAAACACCAACAACCAAACTC
ACATTACATCCACATTCTCACTCTGACAACAACGACCACACCCACATTCTTACTCACATTCACAA
ACGTTGACAACGACCACACCCATAACCCATTCACACACTCTGGAAACACCTACAACCACACCACA
TTCTTACCCACATTCTTACCCACATTCACACCCACATTCCCAACC
Right flanking sequence: Indices 45963 -- 46462
GTCAAACCAAGTCACACCTAACACCCATTAACCCCTTCTCCTAATCTTTCACTCCAACCCACTTC
TCCTAATCCTTCACCTACCCTCACCCACTTCTCCTACTTCCTTCTCCTAATCTTTCTCTCCATTC
CTATTACCATGCTATACACTAATCGTCTTCCAGATGTTCAACCCCTCGCCGCCCGTCAGCACCAA
CGCACCCGGGATCTGCCGGTGCCACCGCACGTCCTTGACATCCCTCTGCCAGTGGACAAACAACA
ACTGCGGGGGAATGTCGCGGAGCTGGGCCAGCTGCGCCTTCTGCTGCGAGATCTCCTCGTCGTCC
GCCTCCACGGAAAGGTCCCAGAGCGTCACCGTGTTGTCCTCGGACAGCACCGCCACCACCGACTC
GTCCAACGGGTTGAACAGGATGGCGGTCACGGGCAGCTGGTGGAACTCGTAGTGGGCCACCGGCA
GCGGGGCCGGGCCCTGGCCAAAGTGGCGCAAGTCCCACACGCCCC
Found at i:47074 original size:12 final size:12
Alignment explanation
Indices: 47059--47088 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
47049 GTAGTCGTCG
47059 TCGTCGTCCAGC
1 TCGTCGTCCAGC
47071 TCGTCGTCCAGC
1 TCGTCGTCCAGC
47083 TCGTCG
1 TCGTCG
47089 CGCTCAAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.40, G:0.27, T:0.27
Consensus pattern (12 bp):
TCGTCGTCCAGC
Left flanking sequence: Indices 46559 -- 47058
CAGGCGCGTGTTTCTTCAGACGCGTGTCCCAAATGCGGACAAAACCATCACACCCCGCAGTGGCA
AACACCGTCGTCTCCAGCTGCGACCACTGGATGTCCTCGATCAGCGCCTGGTTGCCGTCGCCCGC
CACGAAGGGCGTCTTGTCCAGCACCCACCCCGAGCTCGCGCGCTGGGTGTAGTAGGTGCGCCCGC
TGCAGTCGCCCGAGAGGAGCGCTCCCGTGGTCACGAGCGGCAGCCAGTCGAGCCCGTACCCCTCG
ACGTTGCCGTGACAACGCACGGTGTGTACAGGACGGCGGGCGGGCTTGGGCACGATGTACCCGGG
AGTGTCGAACGCCTTCATCTGGGGCGCCAAGTCGTAGATCAACACCTCGCCCAGCTCCAGCATGG
TGGCGGTCAAGTACTCGCCCGTGTGGGCCGCGTGCGGCAGCACCCGCAACCGGTTGGTGGTGGCC
CGGAGCGGCACCGCCTCCGAGTCCAAAATGGGGTCGTAGTCGTCG
Right flanking sequence: Indices 47089 -- 47588
CGCTCAAGCGTCTTGGCGAGCTTGGACAACTTGACCATGAGCAACTCGTTGTCCTTGGCCTTGGC
GGCCTGGGTGGCGGTGGCGCAGTACACGGTGGCGGGGTAGGCGCGGCGCTCGTCGCCGAGCAGGT
CGGGGAGGACGTCCACCGTCAAGCACGGCCACGGCATGTTGACGGTGTGCAACATCTCGTAGACA
CTGGGGTCGGCCTGGAGGACCTCGTCGGGGCCAAGCGGTTTCAGCCGGTGGGGCAAGTACACCTC
CTGGGTGTCCTGGGCCGCGTCGGCCTCCATCACCGCTGCGGCGTCCTGGTCGTCGTCGTTGCCGT
CCAACTCGATGATCTCCTCCTCGTCGCCGTCCTCGTCGATGATCTCGTCGTCGTACTCGCCCATG
GCGTCGTCAAACTCGCCCGCGGTGGCCTGCGCGCGCGGCACGTCCCCCTGGGCGGTCTTGGCGGT
CTGGTTCTGCCCGCTGAGCTCGTATTCCGCCAGTCTCTTCATGGT
Found at i:47689 original size:24 final size:24
Alignment explanation
Indices: 47648--47706 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
47638 GTGTGCAGGT
*
47648 GAGATGGATGGGGGGATG-GGTGGG
1 GAGATGGA-GGGGGGATGAGATGGG
47672 AGAGATGGAGGGGGGATGAGATGGG
1 -GAGATGGAGGGGGGATGAGATGGG
*
47697 GGGATGGAGG
1 GAGATGGAGG
47707 TAGATGGGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 18 0.58
25 13 0.42
ACGTcount: A:0.22, C:0.00, G:0.64, T:0.14
Consensus pattern (24 bp):
GAGATGGAGGGGGGATGAGATGGG
Left flanking sequence: Indices 47148 -- 47647
CTTGGCGGCCTGGGTGGCGGTGGCGCAGTACACGGTGGCGGGGTAGGCGCGGCGCTCGTCGCCGA
GCAGGTCGGGGAGGACGTCCACCGTCAAGCACGGCCACGGCATGTTGACGGTGTGCAACATCTCG
TAGACACTGGGGTCGGCCTGGAGGACCTCGTCGGGGCCAAGCGGTTTCAGCCGGTGGGGCAAGTA
CACCTCCTGGGTGTCCTGGGCCGCGTCGGCCTCCATCACCGCTGCGGCGTCCTGGTCGTCGTCGT
TGCCGTCCAACTCGATGATCTCCTCCTCGTCGCCGTCCTCGTCGATGATCTCGTCGTCGTACTCG
CCCATGGCGTCGTCAAACTCGCCCGCGGTGGCCTGCGCGCGCGGCACGTCCCCCTGGGCGGTCTT
GGCGGTCTGGTTCTGCCCGCTGAGCTCGTATTCCGCCAGTCTCTTCATGGTTGGTGTGGTCGCGA
TGCCTGCGATGGCACGATCGCGGAAAAGGTAGGCAGTGTGCAGGT
Right flanking sequence: Indices 47707 -- 48206
TAGATGGGATGGGTAGGAGAGGTGGGAGATGGCAGGAATGGTAGGAGGTGGGTAGAGAAGGTGGG
TGGAGTGGCTTACGGGTTAGGGTGGAAGAAGTGTAGAGAGTAGGCTTTTTGGTTGCATGGTGAGA
GTTTGTAGGGTTAGTTGGTGGTAGTGATGTGGGAGGAGGGTGGGAAGAGAGTAGGCTATTTGTGG
TGTTGTTGAGGGTGGTCCGCTACGGTGTTTAGGGTGGGAACGCTTCTGCTTAAGGGTACTTGAAG
GGCACTGAGTGAGATGACGTATGTTAAAAAAAGCACTTTGAAAAGTAAAACCGCCGAGAAAACGC
CCAGGTACTGAAACACATCTACAGAAGCATTGTAAGTGGTTTAAATGGGAAAATTGGGCAAAATA
GAACATTTATTAGTCTACAAATACAACTTCCAATTCTAACAAAATTTTTCAACAAATGGTTCTGT
AGTCTAGTTGGTTATGGCATCTGCTTAACACGCAGAAGGTCCCCG
Found at i:47697 original size:13 final size:12
Alignment explanation
Indices: 47650--47704 Score: 67
Period size: 12 Copynumber: 4.5 Consensus size: 12
47640 GTGCAGGTGA
47650 GATGGATGGGGG
1 GATGGATGGGGG
* *
47662 GATGGGTGGGAGA
1 GATGGATGGG-GG
47675 GATGGA-GGGGG
1 GATGGATGGGGG
47686 GATGAGATGGGGG
1 GATG-GATGGGGG
47699 GATGGA
1 GATGGA
47705 GGTAGATGGG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 5 0.14
12 16 0.44
13 15 0.42
ACGTcount: A:0.22, C:0.00, G:0.64, T:0.15
Consensus pattern (12 bp):
GATGGATGGGGG
Left flanking sequence: Indices 47150 -- 47649
TGGCGGCCTGGGTGGCGGTGGCGCAGTACACGGTGGCGGGGTAGGCGCGGCGCTCGTCGCCGAGC
AGGTCGGGGAGGACGTCCACCGTCAAGCACGGCCACGGCATGTTGACGGTGTGCAACATCTCGTA
GACACTGGGGTCGGCCTGGAGGACCTCGTCGGGGCCAAGCGGTTTCAGCCGGTGGGGCAAGTACA
CCTCCTGGGTGTCCTGGGCCGCGTCGGCCTCCATCACCGCTGCGGCGTCCTGGTCGTCGTCGTTG
CCGTCCAACTCGATGATCTCCTCCTCGTCGCCGTCCTCGTCGATGATCTCGTCGTCGTACTCGCC
CATGGCGTCGTCAAACTCGCCCGCGGTGGCCTGCGCGCGCGGCACGTCCCCCTGGGCGGTCTTGG
CGGTCTGGTTCTGCCCGCTGAGCTCGTATTCCGCCAGTCTCTTCATGGTTGGTGTGGTCGCGATG
CCTGCGATGGCACGATCGCGGAAAAGGTAGGCAGTGTGCAGGTGA
Right flanking sequence: Indices 47705 -- 48204
GGTAGATGGGATGGGTAGGAGAGGTGGGAGATGGCAGGAATGGTAGGAGGTGGGTAGAGAAGGTG
GGTGGAGTGGCTTACGGGTTAGGGTGGAAGAAGTGTAGAGAGTAGGCTTTTTGGTTGCATGGTGA
GAGTTTGTAGGGTTAGTTGGTGGTAGTGATGTGGGAGGAGGGTGGGAAGAGAGTAGGCTATTTGT
GGTGTTGTTGAGGGTGGTCCGCTACGGTGTTTAGGGTGGGAACGCTTCTGCTTAAGGGTACTTGA
AGGGCACTGAGTGAGATGACGTATGTTAAAAAAAGCACTTTGAAAAGTAAAACCGCCGAGAAAAC
GCCCAGGTACTGAAACACATCTACAGAAGCATTGTAAGTGGTTTAAATGGGAAAATTGGGCAAAA
TAGAACATTTATTAGTCTACAAATACAACTTCCAATTCTAACAAAATTTTTCAACAAATGGTTCT
GTAGTCTAGTTGGTTATGGCATCTGCTTAACACGCAGAAGGTCCC
Found at i:51410 original size:15 final size:15
Alignment explanation
Indices: 51390--51448 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
51380 CGTGCATGAT
51390 TTTGCAACCATTTAA
1 TTTGCAACCATTTAA
*
51405 TTTGCAGCCATTTAA
1 TTTGCAACCATTTAA
* *
51420 TTTGCAGCCATTTTA
1 TTTGCAACCATTTAA
51435 TGATTGCAACCATT
1 T--TTGCAACCATT
51449 GCATAATTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
15 29 0.74
17 10 0.26
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (15 bp):
TTTGCAACCATTTAA
Left flanking sequence: Indices 50890 -- 51389
AACCCAAGCAGATTGGTGTCTTCGATGAGATCAAAGTACAAAGTGAAGCGGTATTGTTTGAAGAA
GTCGAGGGAGTCGTCTCTGCCAAAAGTGAATGACGAGGTTTGACCCTTAATTTTGTATGTGAAGC
TCCAATGACCCTGTCCGTCGAGTTGGTATAAGAGATCGTCGAGTTCATTTTCCAACTCGTCGGTA
TCGATCGACTCGGCCGGGGGATTAGAGTCGATTCCACTAGACATTTCGTTCACAATTCTAGCACA
CAGCCCGCGTTCTAGTGTTTATTGACAGGTCTGGTACAGTCAACACGTTGAACGGTGAAAATAGT
CGTAGACGCGTCATTCACGTGACGAGAGCTCTTCGTCAAAACAGCTACAGAAAGACGTACCAGTA
ACAACCAGCCATTAATTTTAGTTCTACCAAAACGATTACCAAACGTTTCCCGGTACCAGATTCGG
ACCATTATTTTTTATCGCACCAAAATAGAAGTTTTCGTGCATGAT
Right flanking sequence: Indices 51449 -- 51948
GCATAATTTGCGGCCATTTCAGAATTCGCAGCCATTTTAATTTGCAGCATTTCATGATTGCAGCA
TTATGCTTTACAGCCACTCATAATTTACAACCAACCATTCTTTTCCAATTTTTTTTAATTATTTA
CCGTCTAATTATGCTCGGGCACCCGGAACCGCAACTGCTGGCCCTCGTGGTAGATGCGGTTGAGC
GCCTGCTCAAACATCCCATCACGCTCGAGCGCGAGGTATTTTTTGTACAACTGCCACGCGGTGTG
GGCGTCCTCGATCAGGTCGTGGTTGCCGATCTGGACGTCGGTGTTGAGCAACACGTACGCCAAAA
ACTTGAGCGAAAGCTTGCGCTTGAAGTCGTGTTTGTAAAACAAGTCGGCGGTGTCGCGGATCTGC
GCGGGCGGCACCTGGAGGTTGATACACCGGAAGTCGTTGAACAACCCGTGCCCGACAAACACACA
CCCGAGGTTCAAGAGCAACCACAACTTGCGGTAGGCGGTGGCGAG
Found at i:52415 original size:12 final size:12
Alignment explanation
Indices: 52398--52426 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
52388 GTGGGAGCCG
52398 TCTCGGAAGCTC
1 TCTCGGAAGCTC
52410 TCTCGGAAGCTC
1 TCTCGGAAGCTC
52422 TCTCG
1 TCTCG
52427 CCCGCCTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.34, G:0.24, T:0.28
Consensus pattern (12 bp):
TCTCGGAAGCTC
Left flanking sequence: Indices 51898 -- 52397
CACACACCCGAGGTTCAAGAGCAACCACAACTTGCGGTAGGCGGTGGCGAGCGTCACCAACCCCT
TGACCAGCCGGTGCGGGTCCAAGTCGCCGGGTTCGATGCCCAGGTAGTTGGTCAAGTAGTCGTGG
ATCACCGCGGTGTGGACGATGTAGTCGTCGATGAACGCCTCGCCCGCGCGGGGCCCAGCTCCCCT
GATCACCAGCACCCGGGCCAACAGCTGCTGGCGCGGGCGGAGGATGTTGCGCTGGCCCTCGGAGA
ACACCTCGACCACGTCGGGCTTCATGATGACGAACTCGGCGTCGATGGCGATGAGGGTCCCGGGG
GTCGGGGCCTCGCTGCGGGTGAGCAACGCGTAGGTGTGGGCGTGGCCCTCGCGGGTGCCTGCCGC
GAAGTGGTCGCGGTAGAGGATCAGGTCGTCGATGGGGGGGTAGGCGGGCGTCCCGGGAGCCGTAG
CACCCAGAGCCAGCTCTCCCAGAGCCGTCTCGGCCGTGGGAGCCG
Right flanking sequence: Indices 52427 -- 52926
CCCGCCTCAACAGGTTCTGAGCCCTCAGCCACCGTCGCCAACCCCCCAGACCCCCTCGCCAACCC
CCCATGGTTCAACCCGCCAAACGCCGCCTCGATGTCCCGGAACGGAGTCAACGCCGCCGCCTGCT
GCTGGTACAACAACACCACGGGCCGCTTCCACGCGGGCAGCACGCTGAACACCTCGTCCTCCGCC
ACGGGCATCACCAAGAAGTCGTTGAACAACCACCACTGGCCGTCGCGCCGCACGTACGTCACCAA
CGCCGGCCGCCGCGGGTGTGCCACGAGCGCCACGTACCCGAGGAGCTGGTACGCGGCCACGTGTG
GCGTCACCAGGCTCACCTGCTGGCGCACCGAGAGCTTGCCGCCCGCCCCCGACACCGCGTAGAAC
TCGGGCACCAACCACTTGCGGAACAGCCCGAGCTGGCGGAACTCGGCGTCGGAAAGACACATGTT
GAGCAGGAGCACCGGCGGAAGGCCCGTCACCGTCACCATCACCTC
Found at i:53653 original size:21 final size:21
Alignment explanation
Indices: 53592--53640 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
53582 GAGTCAGTAC
53592 TGGCACCGGAGTGGGCAGAGT
1 TGGCACCGGAGTGGGCAGAGT
*
53613 TGGCACCGGAGTGGGTAGAGT
1 TGGCACCGGAGTGGGCAGAGT
53634 TGGCACC
1 TGGCACC
53641 AGACTGGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.18, C:0.20, G:0.45, T:0.16
Consensus pattern (21 bp):
TGGCACCGGAGTGGGCAGAGT
Left flanking sequence: Indices 53092 -- 53591
CGGCGGCAGCACCACGTCCACCAGGTGCTGGAGCCCCCGGTGCTCGGCGGTGCCCCCGCACTGCC
CCCGGTACTGCACGGTGTAGGGGACGGCCACGGCCAGCGGCGGCACCCGGTGGGGGCCCGCCACC
GCCGCGAGGAGGAAGTTGTTGAGCTTGACGGCGGCGGCGGTGAGGGCTGCGGGCAGCGCCGCCGC
GGCGTGGGCGTCGTCGAGCACGAGGCCGCGGGCGCGGGCGTCGGCGTCGGCCGCGAACGTCTGGG
CCCAGTTGGCGATGACCACGGGGGCGCCGCGGGCCTTGTGCATCATGTCGAAGAGGTAGCCCGTC
TCGGTGGCCACCAGCAGGCCGAACGAGCGCACGGTGGAGGCGGTGGACGCGGTGGAGACGGAGGG
GGCCATGGCGGAGGAGAGGGGGTCGGCCACCGAGGGAGTGGGGGGTAAGGGTGTGGGGCCTGAGG
TGGAGGGGGAGGTGTTTGAGGGGGCACCGGGGTGGGAGTCAGTAC
Right flanking sequence: Indices 53641 -- 54140
AGACTGGCCAGAGCCAGCACCAGAGATACCAGAGACACCAGAGACACCAGAGACACCAGAAACAC
CAGAAACACCAGACACTCCATCAGGTAAACCACCATCATTGTGACTATCATTTTGACCCGTCTGG
TTACCAGAAACACCACCATCACTATTGGCCTGTTTCCCAGCCACACCATCATTGTTCGTGTCCCC
ACCCACCTTCTCCCACACCGGCAACTCCAAGTCCTCCTCGGCCAACCCGGCCACCACCCCGTTGT
ACACCACGGGACAGTGGCGGTACAACTGCAACACCGCGTTGGCGTACCCGTTGTCCACCCCCAGC
TCCAACCCACAGAACCGGCCCCCGCTCTGGTTGTAGTAGTCAAAGTCAAAGTCCCGCACCCCAAA
CCTCAGGTAGTGGATCTGGAGCGGGGTGTAGCAGTTGGGGACCGTCCCCGGGGCGGCGCCCGGCG
CGGGGCTCGTCGCAAAGATCAGGGGCGCCAGGGGGTCCGGCGCCG
Found at i:53671 original size:9 final size:9
Alignment explanation
Indices: 53658--53718 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
53648 CCAGAGCCAG
53658 CACCAGAGA
1 CACCAGAGA
*
53667 TACCAGAGA
1 CACCAGAGA
53676 CACCAGAGA
1 CACCAGAGA
53685 CACCAGAGA
1 CACCAGAGA
*
53694 CACCAGAAA
1 CACCAGAGA
*
53703 CACCAGAAA
1 CACCAGAGA
53712 CACCAGA
1 CACCAGA
53719 CACTCCATCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.48, C:0.33, G:0.18, T:0.02
Consensus pattern (9 bp):
CACCAGAGA
Left flanking sequence: Indices 53158 -- 53657
CCGGTACTGCACGGTGTAGGGGACGGCCACGGCCAGCGGCGGCACCCGGTGGGGGCCCGCCACCG
CCGCGAGGAGGAAGTTGTTGAGCTTGACGGCGGCGGCGGTGAGGGCTGCGGGCAGCGCCGCCGCG
GCGTGGGCGTCGTCGAGCACGAGGCCGCGGGCGCGGGCGTCGGCGTCGGCCGCGAACGTCTGGGC
CCAGTTGGCGATGACCACGGGGGCGCCGCGGGCCTTGTGCATCATGTCGAAGAGGTAGCCCGTCT
CGGTGGCCACCAGCAGGCCGAACGAGCGCACGGTGGAGGCGGTGGACGCGGTGGAGACGGAGGGG
GCCATGGCGGAGGAGAGGGGGTCGGCCACCGAGGGAGTGGGGGGTAAGGGTGTGGGGCCTGAGGT
GGAGGGGGAGGTGTTTGAGGGGGCACCGGGGTGGGAGTCAGTACTGGCACCGGAGTGGGCAGAGT
TGGCACCGGAGTGGGTAGAGTTGGCACCAGACTGGCCAGAGCCAG
Right flanking sequence: Indices 53719 -- 54218
CACTCCATCAGGTAAACCACCATCATTGTGACTATCATTTTGACCCGTCTGGTTACCAGAAACAC
CACCATCACTATTGGCCTGTTTCCCAGCCACACCATCATTGTTCGTGTCCCCACCCACCTTCTCC
CACACCGGCAACTCCAAGTCCTCCTCGGCCAACCCGGCCACCACCCCGTTGTACACCACGGGACA
GTGGCGGTACAACTGCAACACCGCGTTGGCGTACCCGTTGTCCACCCCCAGCTCCAACCCACAGA
ACCGGCCCCCGCTCTGGTTGTAGTAGTCAAAGTCAAAGTCCCGCACCCCAAACCTCAGGTAGTGG
ATCTGGAGCGGGGTGTAGCAGTTGGGGACCGTCCCCGGGGCGGCGCCCGGCGCGGGGCTCGTCGC
AAAGATCAGGGGCGCCAGGGGGTCCGGCGCCGGGGTGAGGCGCGAGTGGCGCGCGGCGGCGGCGG
CGGCGTCCTTGTCCTGCTCCAGGAGGAACCGCGGGTTCAACTGGC
Found at i:54711 original size:21 final size:21
Alignment explanation
Indices: 54685--54732 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
54675 CGGACCCGGA
54685 CCCCGAGCCGGCACTGGCAAG
1 CCCCGAGCCGGCACTGGCAAG
54706 CCCCGAGCCGGCACTGGCAAG
1 CCCCGAGCCGGCACTGGCAAG
54727 CCCCGA
1 CCCCGA
54733 CCCCGCGGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.46, G:0.31, T:0.04
Consensus pattern (21 bp):
CCCCGAGCCGGCACTGGCAAG
Left flanking sequence: Indices 54185 -- 54684
TCCTGCTCCAGGAGGAACCGCGGGTTCAACTGGCCCAGGGTGATGTCGCGGAGCAGCTGGTAGCG
GTGGGCCAAGTGGCCCGGGCCCCACTTGGCGCGGTCGTACCCCACGAGCTGCCCCGGGGCCGCGG
CCAGGGCTGCCAACGCGTCGCTCGGGGGGGCGAGGGGCACCTTGGCCATTTCCTTGGTGAACACC
AAGTCCGCGGCAAAGTTGGACAAGAGAAGGTCCTTGTAGTACGGGAGGCCCACCAGCAGCAACGG
CGCGGCGTCGTCGAGCGCCATCGCCGCGCGCGGCTGGTCCACGGGCCAGTCGGGCTGGTCCAACA
GCTGGGGGAACAGCACAAAGTCCTTGGCCTGGGCGGAGAGGCTCCACAAGTGCACGGTAGACCCG
GTGGAGCCCAGTGAGCCCGCCTGGTTCATGGCCGAGCTGAAGCTGGGCCCGAGGCTCGACGGCCC
CGAGGACCCGTCAAAGGGACTCCCGGTGGCGAGCCCGGACCCGGA
Right flanking sequence: Indices 54733 -- 55232
CCCCGCGGGCGCGTGCCCCGGCCCCGCGCTGGCCCCCACCATCCCGTCGGTGAAGCACAAAAAGT
CCCCGTTGGCCAGGATCTGGAGCTGGCCAAAGCTGGCGGGCCCCAGCTTGACGGAGCCCGCGCCG
GGCACGTCCGCCTGGTACACGTACACCTGGCTCTGGTCGTAGATGTCGATGAACTGGACCTGCCC
GTACCGCAGCGCCACACAGAGAATGTTGGGGAGCTTGGGGTGGAACCGCACATGGGCGGCGCCCG
CGGGGAACAGCACCGGGGCAAGCGGCTTCATCATCCGGAGATCGAAAAGACTCACGAGGGGGTCC
ACCACGTACTCCGCCACCAGCTTGCGCCCCTGCGCCGGGCGGTACGAGAGCCCCGTGGTGGCGAT
GTAGCTGCCCTGGATGTCCAAGTCGGTGATGGCGCCCCCGTTGTGCCCGTGGAACAGCTTGACCC
CGCGCCCCGTGTGGGGGTCCAAGAGGTCGAGGGTGCCCTCGGAGG
Found at i:55849 original size:1 final size:1
Alignment explanation
Indices: 55843--55867 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
55833 CGCGCGGGTA
55843 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 55343 -- 55842
TGCCCCGCCACCACAATGTCGTTGACAGCAGCACCGTTGAAACACGCGGTGGTAAGCCGCTTGAA
CCGGTCGCCCGCCTCGCGCAGGGCAAACAGGGTGGCGTCGAGCGCGAGCTTGGCCACGCCGCGGC
GGTTGTTGAAATTGACCCCGGCCCCGGACACCAGGAGGATGCCGTCGCGGTGGCTGAGGTGCTGC
ACCACCTCTGCCCCCGCCAGCGCCCGGAACTTGGTGTAGGGGAACACCTGGAAGTGGGGGCCGGC
GTAGGGCAGGAACAGCGTGGTGTACCCCAGGTGGTCGCCCACCCAGAGGAGATTGGCGTGGGTGT
CGAACACCGCCAGGGTGACCCGGCCTTCGCCGGTGGCCAGCGGGGGCAACCGGGCGATCTCACTC
CACAGGTCCATACGGCGATGGTGGGGGGAGGCGCGAAAGTTGAGGTGCGGCGGGGTGCAGTGCGG
CGACGCGTGGGGGAGTGCGAAGCGCGACTGGGATGCGCGCGGGTA
Right flanking sequence: None
Done.