Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold1
Parameters: 2 7 7 80 10 50 500
Length:  72911

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12398--12466
15
4.6
15
78
7
77
17
27
23
31
1.97
12394--12466
30
2.4
30
86
4
94
16
28
23
31
1.96
13325--13356
15
2.1
15
100
0
64
6
40
34
18
1.76
20740--20780
8
5.4
8
82
11
50
2
0
58
39
1.11
20737--20796
21
2.9
21
76
9
61
5
1
56
36
1.31
20745--20797
7
7.3
7
80
2
52
3
1
54
39
1.29
23950--23990
21
1.9
22
90
5
66
12
39
29
19
1.88
28567--28627
12
5.2
12
92
3
90
47
34
8
9
1.66
28667--28723
26
2.2
26
84
12
73
15
61
1
21
1.43
28681--28723
13
3.3
12
87
6
50
16
60
2
20
1.46
29338--29380
21
2.0
21
86
0
59
13
37
37
11
1.82
30544--30568
9
2.8
9
100
0
50
36
8
56
0
1.29
30583--30612
12
2.5
12
94
0
51
36
3
53
6
1.44
30874--30995
45
2.6
45
88
3
172
27
28
22
20
1.99
31224--31263
21
1.9
21
84
0
53
45
10
32
12
1.75
31594--31642
21
2.3
21
92
0
80
26
36
26
10
1.88
31668--31708
18
2.3
18
95
0
73
19
39
17
24
1.92
31695--31799
27
4.0
27
75
9
92
24
44
19
11
1.83
31710--31783
24
3.0
24
80
6
67
25
43
20
10
1.84
52906--53009
6
16.0
6
83
15
127
0
0
49
50
1.07
52906--53030
26
4.5
26
81
15
142
1
0
46
52
1.10
52902--53024
40
3.0
40
93
1
201
1
0
47
51
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52907--53030
6
21.3
6
86
6
76
1
0
45
52
1.10
64427--64696
141
1.9
141
85
3
373
24
27
29
19
1.98
64487--64782
141
2.1
142
79
6
314
23
28
29
18
1.98
64835--65283
147
3.1
146
77
6
485
28
24
27
19
1.99
69291--69629
141
2.4
142
80
3
394
31
30
22
16
1.96
71209--71311
24
4.3
24
87
0
116
33
30
33
3
1.76
71586--71691
21
5.0
21
82
0
113
30
21
35
12
1.90

Tables:   1

The End!