Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold1
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 72911
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Found at i:12420 original size:15 final size:15
Alignment explanation
Indices: 12398--12466 Score: 77
Period size: 15 Copynumber: 4.6 Consensus size: 15
12388 CCAGTGTCGC
12398 GGTTGACACCTTCGA
1 GGTTGACACCTTCGA
* *
12413 GTTTGACACCTTCGC
1 GGTTGACACCTTCGA
*
12428 GGTTGACACTTTC-A
1 GGTTGACACCTTCGA
*
12442 CGGTTGACACCTTCGT
1 -GGTTGACACCTTCGA
*
12458 TGTTGACAC
1 GGTTGACAC
12467 TGTGTTTGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.17, C:0.28, G:0.23, T:0.32
Consensus pattern (15 bp):
GGTTGACACCTTCGA
Left flanking sequence: Indices 11898 -- 12397
GTTCGCCACAAGCCCCGCCGGACTCGGACACGCGTAGGCCCATGCGGACGTAGGACGTAAAAACG
CGTTGGGCGTATATGTCGTTTGCACCATCCCGTGGGGGCTGCTGTCCACCAGCACCAGCGAACCT
CCGCTATCTGCACGATCCAAATCTATTATTAGCACGGGGGATTGACGACGGCGACATCGCGGGCG
GGCAACAGAATCGCGGAGCCCACCGTGCGCACAGCCCCATTCTTCCTCGGGGCCCGTCCCCTGCA
GAGGACGAAGGGATAGCTTGGGTGTCTGTGGGTGTATTGCCTATTTAGGTTTGCGGGGGCTCTTT
GTGACCATGTTGGCGATGTCGTAGTGGGGACGCTTTTTGGGGGTCTTGGCCAGCCGGTACTCGAG
CTTGCGTTTGGGTGCTACAGGTTTGGCGCCGCTGGCGTGCTTGGGCTTCTGTTTGATGTCGGTGA
CGTCGCTAGGGGTTTTGACACCGGTGTCAACCTCACCAGTGTCGC
Right flanking sequence: Indices 12467 -- 12966
TGTGTTTGACATCTTCGCTACTGTGGCCGGTGACACCTTCCTCCTGCTTGACATTTTTGACGTCG
TCGTTGACACTGTTTTTGACATCCGGTTCGTTGACAGTTTTCCTCGTGACGTCATCGGTGCGCAG
GGTCTTCCCCTCCTTGAAAAACAGCCCGATGGACGCCTGGGTGTCGGGTTTCATCAACTCGGGCC
CCGCGGCCCGGCTGTTGCCCACCTTCTTGCCCACCTTGTAGATGTCGAGCCCCGCGAACGCCTCG
TTGTGCTGCGACTCGAGCACGTCCTCGACCTCAGCAAACAGGAGCTCGGGATCGAGCCACCGGCG
CCACCGGTCCAGGAACGGCGCCACCATCAACGGCTTGCGTGCGTGCAACCACAGAATGTCGTCGT
CGTCGTCGCCGCGGGCCGGGCCCGTGACAATGGCAAACGACGACCCGTGCTCGGGATGGTGACTG
TATACAGCCACCAACCAGATGAGGGGTGCGTTTTGGTAGTGGACA
Found at i:12430 original size:30 final size:30
Alignment explanation
Indices: 12394--12466 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
12384 CTCACCAGTG
*
12394 TCGCGGTTGACACCTTCGA-GTTTGACACCT
1 TCGCGGTTGACACCTTC-ACGGTTGACACCT
*
12424 TCGCGGTTGACACTTTCACGGTTGACACCT
1 TCGCGGTTGACACCTTCACGGTTGACACCT
**
12454 TCGTTGTTGACAC
1 TCGCGGTTGACAC
12467 TGTGTTTGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 1 0.03
30 37 0.97
ACGTcount: A:0.16, C:0.29, G:0.23, T:0.32
Consensus pattern (30 bp):
TCGCGGTTGACACCTTCACGGTTGACACCT
Left flanking sequence: Indices 11894 -- 12393
TTGGGTTCGCCACAAGCCCCGCCGGACTCGGACACGCGTAGGCCCATGCGGACGTAGGACGTAAA
AACGCGTTGGGCGTATATGTCGTTTGCACCATCCCGTGGGGGCTGCTGTCCACCAGCACCAGCGA
ACCTCCGCTATCTGCACGATCCAAATCTATTATTAGCACGGGGGATTGACGACGGCGACATCGCG
GGCGGGCAACAGAATCGCGGAGCCCACCGTGCGCACAGCCCCATTCTTCCTCGGGGCCCGTCCCC
TGCAGAGGACGAAGGGATAGCTTGGGTGTCTGTGGGTGTATTGCCTATTTAGGTTTGCGGGGGCT
CTTTGTGACCATGTTGGCGATGTCGTAGTGGGGACGCTTTTTGGGGGTCTTGGCCAGCCGGTACT
CGAGCTTGCGTTTGGGTGCTACAGGTTTGGCGCCGCTGGCGTGCTTGGGCTTCTGTTTGATGTCG
GTGACGTCGCTAGGGGTTTTGACACCGGTGTCAACCTCACCAGTG
Right flanking sequence: Indices 12467 -- 12966
TGTGTTTGACATCTTCGCTACTGTGGCCGGTGACACCTTCCTCCTGCTTGACATTTTTGACGTCG
TCGTTGACACTGTTTTTGACATCCGGTTCGTTGACAGTTTTCCTCGTGACGTCATCGGTGCGCAG
GGTCTTCCCCTCCTTGAAAAACAGCCCGATGGACGCCTGGGTGTCGGGTTTCATCAACTCGGGCC
CCGCGGCCCGGCTGTTGCCCACCTTCTTGCCCACCTTGTAGATGTCGAGCCCCGCGAACGCCTCG
TTGTGCTGCGACTCGAGCACGTCCTCGACCTCAGCAAACAGGAGCTCGGGATCGAGCCACCGGCG
CCACCGGTCCAGGAACGGCGCCACCATCAACGGCTTGCGTGCGTGCAACCACAGAATGTCGTCGT
CGTCGTCGCCGCGGGCCGGGCCCGTGACAATGGCAAACGACGACCCGTGCTCGGGATGGTGACTG
TATACAGCCACCAACCAGATGAGGGGTGCGTTTTGGTAGTGGACA
Found at i:13365 original size:15 final size:15
Alignment explanation
Indices: 13325--13356 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
13315 TCACCCTCCG
13325 GCCCAGGCTCCTGGT
1 GCCCAGGCTCCTGGT
13340 GCCCAGGCTCCTGGT
1 GCCCAGGCTCCTGGT
13355 GC
1 GC
13357 TCATGCTCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.41, G:0.34, T:0.19
Consensus pattern (15 bp):
GCCCAGGCTCCTGGT
Left flanking sequence: Indices 12825 -- 13324
CTTGCGTGCGTGCAACCACAGAATGTCGTCGTCGTCGTCGCCGCGGGCCGGGCCCGTGACAATGG
CAAACGACGACCCGTGCTCGGGATGGTGACTGTATACAGCCACCAACCAGATGAGGGGTGCGTTT
TGGTAGTGGACAAAGTACGGCTGCTTGTCGCCAGCGACCAGCCGCCACTCGTAGTAGCCCTGTGC
CGGGACCACCCCCCGCCCGTGGTTCTTGACGCTGTCCCACACCAGGTGGCCGCTACAGATGGTCT
CGCGCCGGCAATTGAACGTCTTCAGCTGCTGGGCCCGGGCCGCCCTGGCGTCCCCCTTGAAGTAC
GGGGGGACCATGCCAAAGCTCAGCACCTCCAATTGGAGAGTGCCGTTCTTTTCTATCGCGAGTAG
CGCCCGGTCGGTGGGCGCGATGTTGTAGCTGGGCTTCCACGTCGCCGCCCCCAGCCAGTCGACAG
CCGCACCACGCTCGTCACCACGTTCGTGGCGAGACTCACCCTCCG
Right flanking sequence: Indices 13357 -- 13856
TCATGCTCCGGGTTACCCGGGCCACCCGGTTCCCCGCGCACCGCGGCCGGGAGATCGCTCGCCTC
CAAGCCAAGACTAAACCGTCCACACATGCCAATAAGTTTTGTGGCGCGCACGGCGGCTTCTATTT
TGTAGCTGCTTGCGGTACACCCCTATTCTGCGGGGTGCCCGTCAATTTTATATTATTTTCTAGTC
GAGATCGATACGTTTACCCATGGTGAGCATGCGTTGCAACTGGTCTAGGGTCATTGGGCGCATGC
GTTTGACCATCTTGTTGTAGAGCTTTTCTTTGATCACCTCGACGTCGACCTTCTGCCGGGCCGCC
TCGTCCTCGATGAACTTGATGATTTTCTGGCGGGTGTGGCGGAACTGGCGCTCCAGCAGCCCGTG
CACTTTGAGCCACTCGGTGACGGTGATGTTGTTGGCGACCAAGTCGCGCTCCAAGTCCTTGAAGT
CGTTCCACATCTCGTAGAGGGTGGTGGCCTGGCGCAGGAGCCGCC
Found at i:20756 original size:8 final size:8
Alignment explanation
Indices: 20740--20780 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
20730 GTAGAGAGGT
*
20740 GTGGAGTG
1 GTGGTGTG
20748 GTGGTGTG
1 GTGGTGTG
20756 GTGGTGTG
1 GTGGTGTG
20764 GT-GTGT-
1 GTGGTGTG
*
20770 GTTGTGTG
1 GTGGTGTG
20778 GTG
1 GTG
20781 CGTGGAGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 2 0.07
7 8 0.28
8 19 0.66
ACGTcount: A:0.02, C:0.00, G:0.59, T:0.39
Consensus pattern (8 bp):
GTGGTGTG
Left flanking sequence: Indices 20240 -- 20739
TCTTGATGCGGGCGATCTTCATGGCCGAGGGCCCCTACTTCTCGCTGAACCGGTACCCGCTCAAA
ATGGAGCCGTTTGAGAACACCAACGTGTACGCGGTGGTGTGCGACTCGCTCGGGTTGAACCCGGC
GCCCAACAACGGCACCAGGGTGTTGACGCGGTTGCCCTCGGGCTGGCACGACGAGTCGGTGTACC
CTGGTCTTGACTTTGAGGTCGAGCACTTGGTGCACACCAACAACACCTACGACTACTTGTACCGC
AACCCGCCGGCGAAGACCGTGGGTGAGACGGTTGGTGGGGTCACCGACGGGGTGATTGACGGGGT
GAAGGGGTTTTACGGACACATCAACAACTGGTGGAGCGGCAACGGGTGGATGGGGTGATTTCCAT
TTGCAGTTTGCAGCCACGTGCGGCTGACGCAGGTGAGCGATCTGGTAAGCACGGAAAATGTGTCA
CCGGTATGTATAGAATAAAGGCAATGAGAGAGAGAGTAGAGAGGT
Right flanking sequence: Indices 20781 -- 21280
CGTGGAGTATGGTGTGTTGTGGGTAGTGGGTGGTGCGTAGTTACTGCCTGAAAATGGATTGGATG
TTGAAACGGCTAAAAAGCTGGATAGGGCGTTTTAGGAGAAAAGACAACGTCAGAGCGCCTTCTTG
AAAGCTCTGAAACTGAATCATGACTTTCATTTTCTCGCAACACCCCTCTAGGGCCATTACGTTGG
GACCATGTTTCCATAATATCCGTGGCCTGCATATAGTCGCATGCAAGATGTAACGCCCACCATGG
TGGTCCACCCCAAACGCCCCCCCTAGGTACAAGCCCTTCTCTCCAGCAGTCACTACCCGACACGT
CAGAGGCAACACACTCTAAATCATCATCTTTTTAGTCTCCACGTCCCGCGCCGCCCCTGTGCGGC
TCGCCGCGCACACCGAAAAACGCCACTGTCGCCACTAACCCTACCACCATGTCCGAGGACGACGA
ATTGCTCAACGAGATTCTCCAGCTGCTGACGGAGGACATTGTCAA
Found at i:20761 original size:21 final size:21
Alignment explanation
Indices: 20737--20796 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
20727 AGAGTAGAGA
20737 GGTGTGGAGTGGTGGTGTGGT
1 GGTGTGGAGTGGTGGTGTGGT
* *
20758 GGTGTGGTGTGTGTTGTGTGGT
1 GGTGTGGAGTG-GTGGTGTGGT
* *
20780 -GCGTGGAGT-ATGGTGTG
1 GGTGTGGAGTGGTGGTGTG
20797 TTGTGGGTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 6 0.19
21 17 0.53
22 9 0.28
ACGTcount: A:0.05, C:0.02, G:0.57, T:0.37
Consensus pattern (21 bp):
GGTGTGGAGTGGTGGTGTGGT
Left flanking sequence: Indices 20237 -- 20736
AGCTCTTGATGCGGGCGATCTTCATGGCCGAGGGCCCCTACTTCTCGCTGAACCGGTACCCGCTC
AAAATGGAGCCGTTTGAGAACACCAACGTGTACGCGGTGGTGTGCGACTCGCTCGGGTTGAACCC
GGCGCCCAACAACGGCACCAGGGTGTTGACGCGGTTGCCCTCGGGCTGGCACGACGAGTCGGTGT
ACCCTGGTCTTGACTTTGAGGTCGAGCACTTGGTGCACACCAACAACACCTACGACTACTTGTAC
CGCAACCCGCCGGCGAAGACCGTGGGTGAGACGGTTGGTGGGGTCACCGACGGGGTGATTGACGG
GGTGAAGGGGTTTTACGGACACATCAACAACTGGTGGAGCGGCAACGGGTGGATGGGGTGATTTC
CATTTGCAGTTTGCAGCCACGTGCGGCTGACGCAGGTGAGCGATCTGGTAAGCACGGAAAATGTG
TCACCGGTATGTATAGAATAAAGGCAATGAGAGAGAGAGTAGAGA
Right flanking sequence: Indices 20797 -- 21296
TTGTGGGTAGTGGGTGGTGCGTAGTTACTGCCTGAAAATGGATTGGATGTTGAAACGGCTAAAAA
GCTGGATAGGGCGTTTTAGGAGAAAAGACAACGTCAGAGCGCCTTCTTGAAAGCTCTGAAACTGA
ATCATGACTTTCATTTTCTCGCAACACCCCTCTAGGGCCATTACGTTGGGACCATGTTTCCATAA
TATCCGTGGCCTGCATATAGTCGCATGCAAGATGTAACGCCCACCATGGTGGTCCACCCCAAACG
CCCCCCCTAGGTACAAGCCCTTCTCTCCAGCAGTCACTACCCGACACGTCAGAGGCAACACACTC
TAAATCATCATCTTTTTAGTCTCCACGTCCCGCGCCGCCCCTGTGCGGCTCGCCGCGCACACCGA
AAAACGCCACTGTCGCCACTAACCCTACCACCATGTCCGAGGACGACGAATTGCTCAACGAGATT
CTCCAGCTGCTGACGGAGGACATTGTCAACCGTACCAAGCTCTTG
Found at i:20775 original size:7 final size:7
Alignment explanation
Indices: 20745--20797 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
20735 GAGGTGTGGA
20745 GTGGTGGT
1 GTGGT-GT
20753 GTGGTGGT
1 GTGGT-GT
20761 GTGGTGT
1 GTGGTGT
*
20768 GTGTTGT
1 GTGGTGT
*
20775 GTGGTGC
1 GTGGTGT
*
20782 GTGGAGT
1 GTGGTGT
*
20789 ATGGTGT
1 GTGGTGT
20796 GT
1 GT
20798 TGTGGGTAGT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
7 24 0.65
8 13 0.35
ACGTcount: A:0.04, C:0.02, G:0.55, T:0.40
Consensus pattern (7 bp):
GTGGTGT
Left flanking sequence: Indices 20245 -- 20744
ATGCGGGCGATCTTCATGGCCGAGGGCCCCTACTTCTCGCTGAACCGGTACCCGCTCAAAATGGA
GCCGTTTGAGAACACCAACGTGTACGCGGTGGTGTGCGACTCGCTCGGGTTGAACCCGGCGCCCA
ACAACGGCACCAGGGTGTTGACGCGGTTGCCCTCGGGCTGGCACGACGAGTCGGTGTACCCTGGT
CTTGACTTTGAGGTCGAGCACTTGGTGCACACCAACAACACCTACGACTACTTGTACCGCAACCC
GCCGGCGAAGACCGTGGGTGAGACGGTTGGTGGGGTCACCGACGGGGTGATTGACGGGGTGAAGG
GGTTTTACGGACACATCAACAACTGGTGGAGCGGCAACGGGTGGATGGGGTGATTTCCATTTGCA
GTTTGCAGCCACGTGCGGCTGACGCAGGTGAGCGATCTGGTAAGCACGGAAAATGTGTCACCGGT
ATGTATAGAATAAAGGCAATGAGAGAGAGAGTAGAGAGGTGTGGA
Right flanking sequence: Indices 20798 -- 21297
TGTGGGTAGTGGGTGGTGCGTAGTTACTGCCTGAAAATGGATTGGATGTTGAAACGGCTAAAAAG
CTGGATAGGGCGTTTTAGGAGAAAAGACAACGTCAGAGCGCCTTCTTGAAAGCTCTGAAACTGAA
TCATGACTTTCATTTTCTCGCAACACCCCTCTAGGGCCATTACGTTGGGACCATGTTTCCATAAT
ATCCGTGGCCTGCATATAGTCGCATGCAAGATGTAACGCCCACCATGGTGGTCCACCCCAAACGC
CCCCCCTAGGTACAAGCCCTTCTCTCCAGCAGTCACTACCCGACACGTCAGAGGCAACACACTCT
AAATCATCATCTTTTTAGTCTCCACGTCCCGCGCCGCCCCTGTGCGGCTCGCCGCGCACACCGAA
AAACGCCACTGTCGCCACTAACCCTACCACCATGTCCGAGGACGACGAATTGCTCAACGAGATTC
TCCAGCTGCTGACGGAGGACATTGTCAACCGTACCAAGCTCTTGG
Found at i:23976 original size:21 final size:22
Alignment explanation
Indices: 23950--23990 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
23940 AGTGTGCCAC
23950 GTGCCACGGCAAC-TTGGCCCT
1 GTGCCACGGCAACTTTGGCCCT
*
23971 GTGCCACGGCCACTTTGGCC
1 GTGCCACGGCAACTTTGGCC
23991 ACGTCAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.12, C:0.39, G:0.29, T:0.20
Consensus pattern (22 bp):
GTGCCACGGCAACTTTGGCCCT
Left flanking sequence: Indices 23450 -- 23949
AGCCACAAACCCACTGGGCCCGCCACTGGACCCAGATCAGCCGCCCAGCCGCCCCCTACTCTCCC
CACCGCTTCTCATCCACCACCCACATCTCCTCCTACATCTCCACCCACACACGACCAATTTCCAC
CAGCCCAACACGACACGGCTCAGCCACCACCCACCACCACACCCACCACGCCCATACCCCCTGCC
ACCACCTCCCGTCCCGCTACACCACCCCACCCGTTTTGTGCCGCGCACGCCCCACACCTATATAC
CAACCGCGCATCGCATCCCGAGATCACAGCTGCGATGAAGGAAGTGGTGGTGGACGAGCCGCCCA
AGTGCATCAAGGGGCTCGATTTCGGGGCGCTAGCCACGCGTGACATCGTTGCCCAGTCCGAGGTC
GAGGTCACCACCCGTGACTTGTACGACCTCGACAAGGGCCGTGTCCCGCTGGTCCACGGAGCCCT
CGACACCCACATGGGGATCCTGTCGAACCTGATGGAGTGTGCCAC
Right flanking sequence: Indices 23991 -- 24490
ACGTCAAACTTGCGCTCCCGGTGTTCCATGTCGGATATTTCAAGCAGATCATCCAGATCTTGCAG
CAGATTTGCAAGAACTGTGGAGCGGTGTTGCTTGACGACACCCACCGCAAAACGCTTGGCAAAGA
GCTTGAGCGGTGCACCACCGGCCCGGGAGCCGACAATTTGCGCCGGATGAAGGCCCTCAAGAAGA
TCGTCGACCAGTGCAAAAAGACCCGGCGGTGCTTCAAGTGCAACCACGTGCAGGGCGTGGTCAAG
AAGGCTGCCCTGGGGCTGCTGGGCCCCGCCGGCCTCAAGATCGTCCACGACACCTTCCGGTGGAT
CGGGAAAAAGCCCACTCCGGAAAAGGAAAAGTGGGACAAGGAGTTTGAGGAGGTGTGGTACCGCA
ACCCTGAGCTCGAGAAGTTTGCCAAGCGGGTGATGGACGACTTGAACCCGTTGAAGGTGCTCAAC
TTGTTCAAACAGGTGCTGAGCGCCGACTGTCTCTTGCTCGGGATG
Found at i:28592 original size:12 final size:12
Alignment explanation
Indices: 28567--28627 Score: 90
Period size: 12 Copynumber: 5.2 Consensus size: 12
28557 CCATCCAAAA
28567 ACCAGT-AA-AC
1 ACCAGTAAACAC
28577 ACCAGTAAACAC
1 ACCAGTAAACAC
28589 ACCAGTAAACAC
1 ACCAGTAAACAC
28601 ACCAGTAAACAC
1 ACCAGTAAACAC
* *
28613 ACCATTGAACAC
1 ACCAGTAAACAC
28625 ACC
1 ACC
28628 CATAACCAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
10 6 0.13
11 2 0.04
12 39 0.83
ACGTcount: A:0.48, C:0.34, G:0.08, T:0.10
Consensus pattern (12 bp):
ACCAGTAAACAC
Left flanking sequence: Indices 28067 -- 28566
CTGGTGGAAGCTTTGGGTCTAGTGGAAGCTCTGCATTTGGTAGAAGCGTGTCGGGTGGACATTCT
GTGTGGTGGGGTTGTGTTAAGCCTCGTGGGTCTGGGTGTGTCGTAATTACTACTGTCTTGATCAG
ACTGTTTCAGGTCCGTTAACTGTCTGACGTATTCGACGTTTTACTTCTGTGTCAGACACCGATTG
TCAGTGTCCTGAAACTGGAACGGCTTCGCAAAGGCTCGTTGGCCTGTCCGCGTCTCTCTCTACCC
CGCTCGCGCCAAGCCAGCTCGTGTGGGATTACCTTGTTTACCCTCGTGTGCCTACGTACGTGTGA
CAACCGTGTCGGAGACTAAGCCCTGGGTGCGGGCTCGGAGCACCTTCGGAGTCGCTGAGGGGGTG
CCAGCGTAGAGAGCCCGTCTCGCTGACCACCGCTACTCTACCATTGACTCGAAACCAGCCCAAAC
ACGTCTTTTCCACCCTACCTAGTACCACTCTACGACCATCCAAAA
Right flanking sequence: Indices 28628 -- 29127
CATAACCAAAGCTATCCCAGAAACCATTTTCTCCCCTCGCCCACTCCCTTCCACCACTTCCCGCA
CCCACTTCCTTCACCCACTTCCTCCACCCACCACATTTCGCGATCTTCGCACGAATAAACAACCG
ATGCTCTCCCAGACCGAGGTGCTTGGCGCGCTAGACGAGTACCACTACCGCCAAGTGACCGATCC
CGAGTTCAATGGCGACCACTACCCAGCCCTCTTGGGCCTCCTGCGCCAGATGTGGGCGCTGCTGG
TGCGTGCCGAGCCCAAGACCCGCGCCAAGGCCCTGCCAGCGATGGCCCTGGCCGCGATCACCGAC
TTCCTCGTCCGCAAACGCCAAACCGTGGGCACGGTGCCGCAGGCGTTCGTCTCCGAGACCCTCAA
GCAGTTGCGCAGGGTGTTCCCGTTGTTCATCGAGGACTCGTACCTGCCGGTGGCCCTCGAGGACG
TCCCGTTCCTGATGAACCTGGCCCGCGAGCGCGAGCGGCTAGCGG
Found at i:28696 original size:26 final size:26
Alignment explanation
Indices: 28667--28723 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
28657 TCTCCCCTCG
28667 CCCACTCCCTTC-CACCACTTCC-CGCA
1 CCCACTCCCTTCAC-CCACTTCCTC-CA
*
28693 CCCACTTCCTTCACCCACTTCCTCCA
1 CCCACTCCCTTCACCCACTTCCTCCA
28719 CCCAC
1 CCCAC
28724 CACATTTCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.16, C:0.61, G:0.02, T:0.21
Consensus pattern (26 bp):
CCCACTCCCTTCACCCACTTCCTCCA
Left flanking sequence: Indices 28167 -- 28666
GTGTGTCGTAATTACTACTGTCTTGATCAGACTGTTTCAGGTCCGTTAACTGTCTGACGTATTCG
ACGTTTTACTTCTGTGTCAGACACCGATTGTCAGTGTCCTGAAACTGGAACGGCTTCGCAAAGGC
TCGTTGGCCTGTCCGCGTCTCTCTCTACCCCGCTCGCGCCAAGCCAGCTCGTGTGGGATTACCTT
GTTTACCCTCGTGTGCCTACGTACGTGTGACAACCGTGTCGGAGACTAAGCCCTGGGTGCGGGCT
CGGAGCACCTTCGGAGTCGCTGAGGGGGTGCCAGCGTAGAGAGCCCGTCTCGCTGACCACCGCTA
CTCTACCATTGACTCGAAACCAGCCCAAACACGTCTTTTCCACCCTACCTAGTACCACTCTACGA
CCATCCAAAAACCAGTAAACACCAGTAAACACACCAGTAAACACACCAGTAAACACACCATTGAA
CACACCCATAACCAAAGCTATCCCAGAAACCATTTTCTCCCCTCG
Right flanking sequence: Indices 28724 -- 29223
CACATTTCGCGATCTTCGCACGAATAAACAACCGATGCTCTCCCAGACCGAGGTGCTTGGCGCGC
TAGACGAGTACCACTACCGCCAAGTGACCGATCCCGAGTTCAATGGCGACCACTACCCAGCCCTC
TTGGGCCTCCTGCGCCAGATGTGGGCGCTGCTGGTGCGTGCCGAGCCCAAGACCCGCGCCAAGGC
CCTGCCAGCGATGGCCCTGGCCGCGATCACCGACTTCCTCGTCCGCAAACGCCAAACCGTGGGCA
CGGTGCCGCAGGCGTTCGTCTCCGAGACCCTCAAGCAGTTGCGCAGGGTGTTCCCGTTGTTCATC
GAGGACTCGTACCTGCCGGTGGCCCTCGAGGACGTCCCGTTCCTGATGAACCTGGCCCGCGAGCG
CGAGCGGCTAGCGGCCACCGCGTTCGCCGGGTACCTGCCGCAGGACGTGTTTTCGCTCTCCGAGG
TCACCATGGTCCACAATCCCCGCACCGTCACCATGGGCATCTGCG
Found at i:28697 original size:13 final size:12
Alignment explanation
Indices: 28681--28723 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
28671 CTCCCTTCCA
28681 CCACTTCCCGCAC
1 CCACTTCCC-CAC
*
28694 CCACTTCCTTCAC
1 CCACTTCC-CCAC
28707 CCACTTCCTCCAC
1 CCACTTCC-CCAC
28720 CCAC
1 CCAC
28724 CACATTTCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.16, C:0.60, G:0.02, T:0.21
Consensus pattern (12 bp):
CCACTTCCCCAC
Left flanking sequence: Indices 28181 -- 28680
CTACTGTCTTGATCAGACTGTTTCAGGTCCGTTAACTGTCTGACGTATTCGACGTTTTACTTCTG
TGTCAGACACCGATTGTCAGTGTCCTGAAACTGGAACGGCTTCGCAAAGGCTCGTTGGCCTGTCC
GCGTCTCTCTCTACCCCGCTCGCGCCAAGCCAGCTCGTGTGGGATTACCTTGTTTACCCTCGTGT
GCCTACGTACGTGTGACAACCGTGTCGGAGACTAAGCCCTGGGTGCGGGCTCGGAGCACCTTCGG
AGTCGCTGAGGGGGTGCCAGCGTAGAGAGCCCGTCTCGCTGACCACCGCTACTCTACCATTGACT
CGAAACCAGCCCAAACACGTCTTTTCCACCCTACCTAGTACCACTCTACGACCATCCAAAAACCA
GTAAACACCAGTAAACACACCAGTAAACACACCAGTAAACACACCATTGAACACACCCATAACCA
AAGCTATCCCAGAAACCATTTTCTCCCCTCGCCCACTCCCTTCCA
Right flanking sequence: Indices 28724 -- 29223
CACATTTCGCGATCTTCGCACGAATAAACAACCGATGCTCTCCCAGACCGAGGTGCTTGGCGCGC
TAGACGAGTACCACTACCGCCAAGTGACCGATCCCGAGTTCAATGGCGACCACTACCCAGCCCTC
TTGGGCCTCCTGCGCCAGATGTGGGCGCTGCTGGTGCGTGCCGAGCCCAAGACCCGCGCCAAGGC
CCTGCCAGCGATGGCCCTGGCCGCGATCACCGACTTCCTCGTCCGCAAACGCCAAACCGTGGGCA
CGGTGCCGCAGGCGTTCGTCTCCGAGACCCTCAAGCAGTTGCGCAGGGTGTTCCCGTTGTTCATC
GAGGACTCGTACCTGCCGGTGGCCCTCGAGGACGTCCCGTTCCTGATGAACCTGGCCCGCGAGCG
CGAGCGGCTAGCGGCCACCGCGTTCGCCGGGTACCTGCCGCAGGACGTGTTTTCGCTCTCCGAGG
TCACCATGGTCCACAATCCCCGCACCGTCACCATGGGCATCTGCG
Found at i:29362 original size:21 final size:21
Alignment explanation
Indices: 29338--29380 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
29328 GCCAACTGGT
29338 TGGCAGCGCTCAACCGGCGCA
1 TGGCAGCGCTCAACCGGCGCA
* * *
29359 TGGCCGCGGTCGACCGGCGCA
1 TGGCAGCGCTCAACCGGCGCA
29380 T
1 T
29381 CGTCATCATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.37, G:0.37, T:0.12
Consensus pattern (21 bp):
TGGCAGCGCTCAACCGGCGCA
Left flanking sequence: Indices 28838 -- 29337
CCACTACCCAGCCCTCTTGGGCCTCCTGCGCCAGATGTGGGCGCTGCTGGTGCGTGCCGAGCCCA
AGACCCGCGCCAAGGCCCTGCCAGCGATGGCCCTGGCCGCGATCACCGACTTCCTCGTCCGCAAA
CGCCAAACCGTGGGCACGGTGCCGCAGGCGTTCGTCTCCGAGACCCTCAAGCAGTTGCGCAGGGT
GTTCCCGTTGTTCATCGAGGACTCGTACCTGCCGGTGGCCCTCGAGGACGTCCCGTTCCTGATGA
ACCTGGCCCGCGAGCGCGAGCGGCTAGCGGCCACCGCGTTCGCCGGGTACCTGCCGCAGGACGTG
TTTTCGCTCTCCGAGGTCACCATGGTCCACAATCCCCGCACCGTCACCATGGGCATCTGCGGCAA
CATCGCGGTGCTGGAGTGGCTCCCGCCGGTGGTGGTGTCCAACTGCCCCGTGCGGCTGGCAGAGT
ACCACCCGCAGGGGCTCAACAACCTGTTTGCCATGGCCAACTGGT
Right flanking sequence: Indices 29381 -- 29880
CGTCATCATCTGCCACAACCACGTCGTGGTGCTGCCTCGCAAGTACCTGCACGTGCGTCTCCACT
ACATCCTGCTTGCCAACGACGCCTACTTTGGCGCCACCAACCCGCTACGGTTCCCCAGTGACTTT
GGCATCACCTACTACGTCAAGTACTTATTGCTCCAGGAGATGGCGCGGCTCCAGATGTTCCCCGA
CGACGTGTGGATGGACCAGATCCTCATTCTGTACGGGCAGATCACCGACCTGTTGCTTGTGGGCG
ACGGCAAGTACTTTTCGCAGCTCCTGGTGATGAAGGCCGGGTGGATCGGGCCGGTGTCCGACGTG
CGGCTGCACAACCCGCGCATCGTCTACGACGTGGACTCGTTCTACTTCACCCACGTGCCGGTGTC
GCCGCTCCCGCTCATCGAAAACTACCACTACCTGGTCAAGGACTTGTACTACAACGTGGCGTTGC
TCCTGCGGTACCAGATCCCCGCGCCCAAGGCCGGGCTGCTGTTGC
Found at i:30558 original size:9 final size:9
Alignment explanation
Indices: 30544--30568 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
30534 GTGAACCGGA
30544 AGAAGGGCG
1 AGAAGGGCG
30553 AGAAGGGCG
1 AGAAGGGCG
30562 AGAAGGG
1 AGAAGGG
30569 AGAAAAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.56, T:0.00
Consensus pattern (9 bp):
AGAAGGGCG
Left flanking sequence: Indices 30044 -- 30543
GGCGCACATCGCGCCCGTGGCCGAGTTGCTCCAGCTCGAGGCGCAAACGTGTCCGCCAAAGAAGG
TGAAGGCGGCATCGCACTTGTTTGACCCGGATCCGGAGGCGGAGATACAGCTGGCCGCGTACGTG
GGGCTCCGGCTTCCCCAGGACGTGGACGTGGTGAAGAAACGGCCGGCGGAGGACGAGGAGCTGCC
GCGCAAGGTCAAGAAAATGCGCATGGTCGAGGAGATGATGACGCTGCGGGTGCCTTTTGTCGATG
CCAAGGGCATTTTCAGCGACGACGAGGACGACACCCGGCCCGACGACTCGTTCGACGGGGTGGTG
TCGAACCTGGGGTCGCGCAAGCTGTCTGCGAAGGAGCTTGCGAACCCCAAGGTGCGCAAGCGGCC
GGCGATGGCACCGGGCGCGATTCCCGAGCTCCAGCACGCGAAGAACGCCCAGGAGACGACGCCCG
AGCCGTCGCCGTCGCAGGAGGTGACGCCCACGCCCGTGAACCGGA
Right flanking sequence: Indices 30569 -- 31068
AGAAAAGGGAGCAGAGGGAGTAGAGAAGGGAGTAGAGCAGGGAGCAAAGCCTGTTGCAGCGCTGC
CTACGAAGCCAGTTGCGAAAGCTCCTGCAAAAGCTCTTGCTAAGGTGCCTTCTCTGCCTCTGAAG
AAGGCTGAGCCTGCGAAGGCCAAGGCACTGAAGGCGGAGGCCGCTAGAAAGACTGCTGAACCGGC
TCCGGAGGAACCCACCCAGGTGGACAGTATTCAGAACAGTGCCAAGCCCACCACGAACGGGAAAA
CTCAGGGGGCTGCTAAGAAGGCTCCCGAACCCAAGGCTCCTGAGCCTGCTAAGGCTTCTGAGGCG
GTCAAGGCTCCTGAACCGGCTAAAACAACTGCTAAGGCTTCTGAATCTAAGGCTCCTGAACCAGC
TAAAACAACTGCTAAGGCCCCTGAAGCTAAGGCTCCTCAGCCCAATGCTCCCGAAACCACGACTT
CCGCGGCCTCCGACTCCAGTCTGCTGGACTCCGACTCCCTGGACG
Found at i:30600 original size:12 final size:12
Alignment explanation
Indices: 30583--30612 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
30573 AAGGGAGCAG
30583 AGGGAGTAGAGA
1 AGGGAGTAGAGA
*
30595 AGGGAGTAGAGC
1 AGGGAGTAGAGA
30607 AGGGAG
1 AGGGAG
30613 CAAAGCCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.53, T:0.07
Consensus pattern (12 bp):
AGGGAGTAGAGA
Left flanking sequence: Indices 30083 -- 30582
GGCGCAAACGTGTCCGCCAAAGAAGGTGAAGGCGGCATCGCACTTGTTTGACCCGGATCCGGAGG
CGGAGATACAGCTGGCCGCGTACGTGGGGCTCCGGCTTCCCCAGGACGTGGACGTGGTGAAGAAA
CGGCCGGCGGAGGACGAGGAGCTGCCGCGCAAGGTCAAGAAAATGCGCATGGTCGAGGAGATGAT
GACGCTGCGGGTGCCTTTTGTCGATGCCAAGGGCATTTTCAGCGACGACGAGGACGACACCCGGC
CCGACGACTCGTTCGACGGGGTGGTGTCGAACCTGGGGTCGCGCAAGCTGTCTGCGAAGGAGCTT
GCGAACCCCAAGGTGCGCAAGCGGCCGGCGATGGCACCGGGCGCGATTCCCGAGCTCCAGCACGC
GAAGAACGCCCAGGAGACGACGCCCGAGCCGTCGCCGTCGCAGGAGGTGACGCCCACGCCCGTGA
ACCGGAAGAAGGGCGAGAAGGGCGAGAAGGGAGAAAAGGGAGCAG
Right flanking sequence: Indices 30613 -- 31112
CAAAGCCTGTTGCAGCGCTGCCTACGAAGCCAGTTGCGAAAGCTCCTGCAAAAGCTCTTGCTAAG
GTGCCTTCTCTGCCTCTGAAGAAGGCTGAGCCTGCGAAGGCCAAGGCACTGAAGGCGGAGGCCGC
TAGAAAGACTGCTGAACCGGCTCCGGAGGAACCCACCCAGGTGGACAGTATTCAGAACAGTGCCA
AGCCCACCACGAACGGGAAAACTCAGGGGGCTGCTAAGAAGGCTCCCGAACCCAAGGCTCCTGAG
CCTGCTAAGGCTTCTGAGGCGGTCAAGGCTCCTGAACCGGCTAAAACAACTGCTAAGGCTTCTGA
ATCTAAGGCTCCTGAACCAGCTAAAACAACTGCTAAGGCCCCTGAAGCTAAGGCTCCTCAGCCCA
ATGCTCCCGAAACCACGACTTCCGCGGCCTCCGACTCCAGTCTGCTGGACTCCGACTCCCTGGAC
GACTCGTCCTCCTCCGAAAGCGAAATCGAGGACGCCCCCAAGGGC
Found at i:30961 original size:45 final size:45
Alignment explanation
Indices: 30874--30995 Score: 172
Period size: 45 Copynumber: 2.6 Consensus size: 45
30864 GCTCCTGAGC
* *
30874 CTGCTAAGGCTTCTGAGGCGGTCAAGGCTCCTGAACCGGCTAAAACAA
1 CTGCTAAGGCTTCTGAAGC--T-AAGGCTCCTGAACCAGCTAAAACAA
*
30922 CTGCTAAGGCTTCTGAATCTAAGGCTCCTGAACCAGCTAAAACAA
1 CTGCTAAGGCTTCTGAAGCTAAGGCTCCTGAACCAGCTAAAACAA
**
30967 CTGCTAAGGCCCCTGAAGCTAAGGCTCCT
1 CTGCTAAGGCTTCTGAAGCTAAGGCTCCT
30996 CAGCCCAATG
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
45 50 0.74
46 1 0.01
48 17 0.25
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (45 bp):
CTGCTAAGGCTTCTGAAGCTAAGGCTCCTGAACCAGCTAAAACAA
Left flanking sequence: Indices 30374 -- 30873
CCTGGGGTCGCGCAAGCTGTCTGCGAAGGAGCTTGCGAACCCCAAGGTGCGCAAGCGGCCGGCGA
TGGCACCGGGCGCGATTCCCGAGCTCCAGCACGCGAAGAACGCCCAGGAGACGACGCCCGAGCCG
TCGCCGTCGCAGGAGGTGACGCCCACGCCCGTGAACCGGAAGAAGGGCGAGAAGGGCGAGAAGGG
AGAAAAGGGAGCAGAGGGAGTAGAGAAGGGAGTAGAGCAGGGAGCAAAGCCTGTTGCAGCGCTGC
CTACGAAGCCAGTTGCGAAAGCTCCTGCAAAAGCTCTTGCTAAGGTGCCTTCTCTGCCTCTGAAG
AAGGCTGAGCCTGCGAAGGCCAAGGCACTGAAGGCGGAGGCCGCTAGAAAGACTGCTGAACCGGC
TCCGGAGGAACCCACCCAGGTGGACAGTATTCAGAACAGTGCCAAGCCCACCACGAACGGGAAAA
CTCAGGGGGCTGCTAAGAAGGCTCCCGAACCCAAGGCTCCTGAGC
Right flanking sequence: Indices 30996 -- 31495
CAGCCCAATGCTCCCGAAACCACGACTTCCGCGGCCTCCGACTCCAGTCTGCTGGACTCCGACTC
CCTGGACGACTCGTCCTCCTCCGAAAGCGAAATCGAGGACGCCCCCAAGGGCAAGCCCAAATCCA
ACTCGATTGCGGCGTTGGCAGCCAAGGCCAAGGCCATCCGCACCAGCTCGTTGAAAGCCCAGAAC
GAGCGAGCGAAGCTGGCCCGTGCCGAGCTCAAAAAGAAGCAGGACGAGTTGAGCAAGAAACAAGA
TGAGTTGAAGAAGGGCGACGCCAAGAGAAAGGCCAAGGCGCCCGCGAAGAAGGAGCCCAAGACTA
AGGCCAAGGCCAAGGAGGTGAAGGAGACTCCGAAGGAAGCTACCAAGCCCGTGGAGTCCCCCACC
GAGGCAGCGAAGGACACCGCCACCGAGACGGCGCCAACTACTGCCGCTGCCAAGGCCAAGGAGAC
GGCGAAGCCCAAGAAGGCCCCTGCCAAACCCAAGCCCGCGGCCAA
Found at i:31248 original size:21 final size:21
Alignment explanation
Indices: 31224--31263 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
31214 CGAGCTCAAA
* *
31224 AAGAAGCAGGACGAGTTGAGC
1 AAGAAACAAGACGAGTTGAGC
*
31245 AAGAAACAAGATGAGTTGA
1 AAGAAACAAGACGAGTTGA
31264 AGAAGGGCGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.10, G:0.33, T:0.12
Consensus pattern (21 bp):
AAGAAACAAGACGAGTTGAGC
Left flanking sequence: Indices 30724 -- 31223
CACTGAAGGCGGAGGCCGCTAGAAAGACTGCTGAACCGGCTCCGGAGGAACCCACCCAGGTGGAC
AGTATTCAGAACAGTGCCAAGCCCACCACGAACGGGAAAACTCAGGGGGCTGCTAAGAAGGCTCC
CGAACCCAAGGCTCCTGAGCCTGCTAAGGCTTCTGAGGCGGTCAAGGCTCCTGAACCGGCTAAAA
CAACTGCTAAGGCTTCTGAATCTAAGGCTCCTGAACCAGCTAAAACAACTGCTAAGGCCCCTGAA
GCTAAGGCTCCTCAGCCCAATGCTCCCGAAACCACGACTTCCGCGGCCTCCGACTCCAGTCTGCT
GGACTCCGACTCCCTGGACGACTCGTCCTCCTCCGAAAGCGAAATCGAGGACGCCCCCAAGGGCA
AGCCCAAATCCAACTCGATTGCGGCGTTGGCAGCCAAGGCCAAGGCCATCCGCACCAGCTCGTTG
AAAGCCCAGAACGAGCGAGCGAAGCTGGCCCGTGCCGAGCTCAAA
Right flanking sequence: Indices 31264 -- 31763
AGAAGGGCGACGCCAAGAGAAAGGCCAAGGCGCCCGCGAAGAAGGAGCCCAAGACTAAGGCCAAG
GCCAAGGAGGTGAAGGAGACTCCGAAGGAAGCTACCAAGCCCGTGGAGTCCCCCACCGAGGCAGC
GAAGGACACCGCCACCGAGACGGCGCCAACTACTGCCGCTGCCAAGGCCAAGGAGACGGCGAAGC
CCAAGAAGGCCCCTGCCAAACCCAAGCCCGCGGCCAAAGAGACCCCCAAGCCAAAGTCTCCCGAG
GAGCCTACGGAACAGGCCAATGGGTCGGAAGAGGCGCCCATGCCTAAGCCTGTCCTGAAGGCTCC
CGCTAAGGCCACCGCTAAAGCTACTGAGGCCACCGCTAAGGCCACTGAGGCCACTTCCAAGACAC
TTCCTGCCAACTCTGCTACTACTGCCCCTAAGGCTACTACTGCCCCTATGGCTACCACCAAGGCC
ACCGCCCCGAAGGCTCCTACCAAGGCCACCGCTCTTAAGGCTACC
Found at i:31619 original size:21 final size:21
Alignment explanation
Indices: 31594--31642 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
31584 GCTCCCGCTA
*
31594 AGGCCACCGCTAAAGCTACTG
1 AGGCCACCGCTAAAGCCACTG
*
31615 AGGCCACCGCTAAGGCCACTG
1 AGGCCACCGCTAAAGCCACTG
31636 AGGCCAC
1 AGGCCAC
31643 TTCCAAGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.37, G:0.27, T:0.10
Consensus pattern (21 bp):
AGGCCACCGCTAAAGCCACTG
Left flanking sequence: Indices 31094 -- 31593
CGAGGACGCCCCCAAGGGCAAGCCCAAATCCAACTCGATTGCGGCGTTGGCAGCCAAGGCCAAGG
CCATCCGCACCAGCTCGTTGAAAGCCCAGAACGAGCGAGCGAAGCTGGCCCGTGCCGAGCTCAAA
AAGAAGCAGGACGAGTTGAGCAAGAAACAAGATGAGTTGAAGAAGGGCGACGCCAAGAGAAAGGC
CAAGGCGCCCGCGAAGAAGGAGCCCAAGACTAAGGCCAAGGCCAAGGAGGTGAAGGAGACTCCGA
AGGAAGCTACCAAGCCCGTGGAGTCCCCCACCGAGGCAGCGAAGGACACCGCCACCGAGACGGCG
CCAACTACTGCCGCTGCCAAGGCCAAGGAGACGGCGAAGCCCAAGAAGGCCCCTGCCAAACCCAA
GCCCGCGGCCAAAGAGACCCCCAAGCCAAAGTCTCCCGAGGAGCCTACGGAACAGGCCAATGGGT
CGGAAGAGGCGCCCATGCCTAAGCCTGTCCTGAAGGCTCCCGCTA
Right flanking sequence: Indices 31643 -- 32142
TTCCAAGACACTTCCTGCCAACTCTGCTACTACTGCCCCTAAGGCTACTACTGCCCCTATGGCTA
CCACCAAGGCCACCGCCCCGAAGGCTCCTACCAAGGCCACCGCTCTTAAGGCTACCAAGACCACT
GCCCCTAAGGCGACTACCAAGCCCACCCGGGCTCCCAGCCCCCCGGCATCCGAGCCTGAGGCCCC
CAAGCCGCGACTCGCCACCCTCGCGCTGCTCTCCTCCAAACAGATCCCCTCGACCTACGACCGCA
AGGCCGCCCCCGCCGCCAGCCAAAAGAAGCCCCACAAACTGCCGTTTGACCTGGACTCCGACTCC
AGCTCCGACCTGGACTAGTTAATACATCTATTCACTATTGGTTTTTCTTAAAATCCGCGTCGGCC
CGCGCCAACTTGCGCACGTTCTCCCAGTTGTCCAAGCCCGGCTTGTCCACCAACGTCACAAACGG
CAACCCCCACGTGTAGTGGAACAGGTAGTATTTAGCGGTGCCCTG
Found at i:31689 original size:18 final size:18
Alignment explanation
Indices: 31668--31708 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
31658 TGCCAACTCT
31668 GCTACTACTGCCCCTAAG
1 GCTACTACTGCCCCTAAG
*
31686 GCTACTACTGCCCCTATG
1 GCTACTACTGCCCCTAAG
31704 GCTAC
1 GCTAC
31709 CACCAAGGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.39, G:0.17, T:0.24
Consensus pattern (18 bp):
GCTACTACTGCCCCTAAG
Left flanking sequence: Indices 31168 -- 31667
CCAGCTCGTTGAAAGCCCAGAACGAGCGAGCGAAGCTGGCCCGTGCCGAGCTCAAAAAGAAGCAG
GACGAGTTGAGCAAGAAACAAGATGAGTTGAAGAAGGGCGACGCCAAGAGAAAGGCCAAGGCGCC
CGCGAAGAAGGAGCCCAAGACTAAGGCCAAGGCCAAGGAGGTGAAGGAGACTCCGAAGGAAGCTA
CCAAGCCCGTGGAGTCCCCCACCGAGGCAGCGAAGGACACCGCCACCGAGACGGCGCCAACTACT
GCCGCTGCCAAGGCCAAGGAGACGGCGAAGCCCAAGAAGGCCCCTGCCAAACCCAAGCCCGCGGC
CAAAGAGACCCCCAAGCCAAAGTCTCCCGAGGAGCCTACGGAACAGGCCAATGGGTCGGAAGAGG
CGCCCATGCCTAAGCCTGTCCTGAAGGCTCCCGCTAAGGCCACCGCTAAAGCTACTGAGGCCACC
GCTAAGGCCACTGAGGCCACTTCCAAGACACTTCCTGCCAACTCT
Right flanking sequence: Indices 31709 -- 32208
CACCAAGGCCACCGCCCCGAAGGCTCCTACCAAGGCCACCGCTCTTAAGGCTACCAAGACCACTG
CCCCTAAGGCGACTACCAAGCCCACCCGGGCTCCCAGCCCCCCGGCATCCGAGCCTGAGGCCCCC
AAGCCGCGACTCGCCACCCTCGCGCTGCTCTCCTCCAAACAGATCCCCTCGACCTACGACCGCAA
GGCCGCCCCCGCCGCCAGCCAAAAGAAGCCCCACAAACTGCCGTTTGACCTGGACTCCGACTCCA
GCTCCGACCTGGACTAGTTAATACATCTATTCACTATTGGTTTTTCTTAAAATCCGCGTCGGCCC
GCGCCAACTTGCGCACGTTCTCCCAGTTGTCCAAGCCCGGCTTGTCCACCAACGTCACAAACGGC
AACCCCCACGTGTAGTGGAACAGGTAGTATTTAGCGGTGCCCTGCAACAATAGCCGCAAGTACAT
CTCGTACACCAAGTAGAAATACACCCCCAACCCCGTGAACACGTG
Found at i:31726 original size:27 final size:27
Alignment explanation
Indices: 31695--31799 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 27
31685 GGCTACTACT
*
31695 GCCCCTATGGCTACCACCAAGGCCACC
1 GCCCCTAAGGCTACCACCAAGGCCACC
*
31722 GCCCCGAAGGCT-CCTACCAAGGCCACC
1 GCCCCTAAGGCTACC-ACCAAGGCCACC
* * * *
31749 GCTCTTAAGGCT---ACCAAGACCACT
1 GCCCCTAAGGCTACCACCAAGGCCACC
* * *
31773 GCCCCTAAGGCGACTACCAAGCCCACC
1 GCCCCTAAGGCTACCACCAAGGCCACC
31800 CGGGCTCCCA
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
24 19 0.31
26 2 0.03
27 41 0.66
ACGTcount: A:0.25, C:0.45, G:0.19, T:0.11
Consensus pattern (27 bp):
GCCCCTAAGGCTACCACCAAGGCCACC
Left flanking sequence: Indices 31195 -- 31694
GAGCGAAGCTGGCCCGTGCCGAGCTCAAAAAGAAGCAGGACGAGTTGAGCAAGAAACAAGATGAG
TTGAAGAAGGGCGACGCCAAGAGAAAGGCCAAGGCGCCCGCGAAGAAGGAGCCCAAGACTAAGGC
CAAGGCCAAGGAGGTGAAGGAGACTCCGAAGGAAGCTACCAAGCCCGTGGAGTCCCCCACCGAGG
CAGCGAAGGACACCGCCACCGAGACGGCGCCAACTACTGCCGCTGCCAAGGCCAAGGAGACGGCG
AAGCCCAAGAAGGCCCCTGCCAAACCCAAGCCCGCGGCCAAAGAGACCCCCAAGCCAAAGTCTCC
CGAGGAGCCTACGGAACAGGCCAATGGGTCGGAAGAGGCGCCCATGCCTAAGCCTGTCCTGAAGG
CTCCCGCTAAGGCCACCGCTAAAGCTACTGAGGCCACCGCTAAGGCCACTGAGGCCACTTCCAAG
ACACTTCCTGCCAACTCTGCTACTACTGCCCCTAAGGCTACTACT
Right flanking sequence: Indices 31800 -- 32299
CGGGCTCCCAGCCCCCCGGCATCCGAGCCTGAGGCCCCCAAGCCGCGACTCGCCACCCTCGCGCT
GCTCTCCTCCAAACAGATCCCCTCGACCTACGACCGCAAGGCCGCCCCCGCCGCCAGCCAAAAGA
AGCCCCACAAACTGCCGTTTGACCTGGACTCCGACTCCAGCTCCGACCTGGACTAGTTAATACAT
CTATTCACTATTGGTTTTTCTTAAAATCCGCGTCGGCCCGCGCCAACTTGCGCACGTTCTCCCAG
TTGTCCAAGCCCGGCTTGTCCACCAACGTCACAAACGGCAACCCCCACGTGTAGTGGAACAGGTA
GTATTTAGCGGTGCCCTGCAACAATAGCCGCAAGTACATCTCGTACACCAAGTAGAAATACACCC
CCAACCCCGTGAACACGTGCCACCACCCGTGGCCCTCCAAAAGGAACCCGTAGGGCATCCCGATC
TCGCGACGCAAATGGCGCCAGGTGGGACACAAGTGGATGTCCAAG
Found at i:31781 original size:24 final size:24
Alignment explanation
Indices: 31710--31783 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
31700 TATGGCTACC
* *
31710 ACCAAGGCCACCGCCCCGAAGGCTCCT
1 ACCAAGACCACCGCCCCTAAGG---CT
* * *
31737 ACCAAGGCCACCGCTCTTAAGGCT
1 ACCAAGACCACCGCCCCTAAGGCT
*
31761 ACCAAGACCACTGCCCCTAAGGC
1 ACCAAGACCACCGCCCCTAAGGC
31784 GACTACCAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 21 0.52
27 19 0.47
ACGTcount: A:0.26, C:0.43, G:0.20, T:0.11
Consensus pattern (24 bp):
ACCAAGACCACCGCCCCTAAGGCT
Left flanking sequence: Indices 31210 -- 31709
GTGCCGAGCTCAAAAAGAAGCAGGACGAGTTGAGCAAGAAACAAGATGAGTTGAAGAAGGGCGAC
GCCAAGAGAAAGGCCAAGGCGCCCGCGAAGAAGGAGCCCAAGACTAAGGCCAAGGCCAAGGAGGT
GAAGGAGACTCCGAAGGAAGCTACCAAGCCCGTGGAGTCCCCCACCGAGGCAGCGAAGGACACCG
CCACCGAGACGGCGCCAACTACTGCCGCTGCCAAGGCCAAGGAGACGGCGAAGCCCAAGAAGGCC
CCTGCCAAACCCAAGCCCGCGGCCAAAGAGACCCCCAAGCCAAAGTCTCCCGAGGAGCCTACGGA
ACAGGCCAATGGGTCGGAAGAGGCGCCCATGCCTAAGCCTGTCCTGAAGGCTCCCGCTAAGGCCA
CCGCTAAAGCTACTGAGGCCACCGCTAAGGCCACTGAGGCCACTTCCAAGACACTTCCTGCCAAC
TCTGCTACTACTGCCCCTAAGGCTACTACTGCCCCTATGGCTACC
Right flanking sequence: Indices 31784 -- 32283
GACTACCAAGCCCACCCGGGCTCCCAGCCCCCCGGCATCCGAGCCTGAGGCCCCCAAGCCGCGAC
TCGCCACCCTCGCGCTGCTCTCCTCCAAACAGATCCCCTCGACCTACGACCGCAAGGCCGCCCCC
GCCGCCAGCCAAAAGAAGCCCCACAAACTGCCGTTTGACCTGGACTCCGACTCCAGCTCCGACCT
GGACTAGTTAATACATCTATTCACTATTGGTTTTTCTTAAAATCCGCGTCGGCCCGCGCCAACTT
GCGCACGTTCTCCCAGTTGTCCAAGCCCGGCTTGTCCACCAACGTCACAAACGGCAACCCCCACG
TGTAGTGGAACAGGTAGTATTTAGCGGTGCCCTGCAACAATAGCCGCAAGTACATCTCGTACACC
AAGTAGAAATACACCCCCAACCCCGTGAACACGTGCCACCACCCGTGGCCCTCCAAAAGGAACCC
GTAGGGCATCCCGATCTCGCGACGCAAATGGCGCCAGGTGGGACA
Found at i:52917 original size:6 final size:6
Alignment explanation
Indices: 52906--53009 Score: 127
Period size: 6 Copynumber: 16.0 Consensus size: 6
52896 TCATTATGGT
52906 GTGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTGG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTT-G
*
52959 TGTGTTG GTGTTG ATGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTG
1 -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTTG
53010 TTGATGTTGT
Statistics
Matches: 88, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
6 60 0.68
7 8 0.09
8 20 0.23
ACGTcount: A:0.01, C:0.00, G:0.49, T:0.50
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 52406 -- 52905
ACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGAAAATCAAA
GAAGATGGGGGAAAAAAATCCCCTCGAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTGATACTT
GCTCACCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAATCTCTCGGCAGGGTCATTATCCGTT
GGCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGTTTGTTACTGGTAG
GTTGGCCACCTACTAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTACTC
GATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGA
ACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGGGAG
ACGAGATCAGAAGTACTAGTGGTGTCACCCCCTTCTCATTATGGT
Right flanking sequence: Indices 53010 -- 53509
TTGATGTTGTTGTTGTTGTTGCTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCC
CTGTTGGTGGTGTCAGTGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTT
CCCCCTGTTGGTGGTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGG
TGCGCCTTCGGGGTAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATTGTATTA
TATAGGATATATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGA
CAAATATCACATGGGTTTCTTGAGCCGCACCAGTAGATTAGGTCAGCTCGTAAAGCGGTTATGTA
ATGCTCGTAAAGTCTTCTACCAATAATAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAA
GGTGAGGGGACCGTTCTATTCTCTAACAAGATACATTATGTAATA
Found at i:52940 original size:26 final size:26
Alignment explanation
Indices: 52906--53030 Score: 142
Period size: 26 Copynumber: 4.5 Consensus size: 26
52896 TCATTATGGT
52906 GTGTTGGTGTTGGTGTGTTGGTGTTG
1 GTGTTGGTGTTGGTGTGTTGGTGTTG
52932 GTGTTGGTGTTGGTGTGTTGGTGTTGG
1 GTGTTGGTGTTGGTGTGTTGGTGTT-G
52959 TGTGTTGGTGTTGATGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTG--G-T-GTGTT-G-GTGTTG
*
52992 GTGTTGGTGTTGGTGTTGTTGATGTTG
1 GTGTTGGTGTTGGTG-TGTTGGTGTTG
* *
53019 TTGTTGTTGTTG
1 GTGTTGGTGTTG
53031 CTGGTCGCTG
Statistics
Matches: 87, Mismatches: 3, Indels: 17
0.81 0.03 0.16
Matches are distributed among these distances:
26 25 0.29
27 16 0.18
28 14 0.16
29 5 0.06
30 2 0.02
31 1 0.01
32 17 0.20
33 2 0.02
34 5 0.06
ACGTcount: A:0.02, C:0.00, G:0.46, T:0.52
Consensus pattern (26 bp):
GTGTTGGTGTTGGTGTGTTGGTGTTG
Left flanking sequence: Indices 52406 -- 52905
ACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGAAAATCAAA
GAAGATGGGGGAAAAAAATCCCCTCGAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTGATACTT
GCTCACCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAATCTCTCGGCAGGGTCATTATCCGTT
GGCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGTTTGTTACTGGTAG
GTTGGCCACCTACTAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTACTC
GATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGA
ACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGGGAG
ACGAGATCAGAAGTACTAGTGGTGTCACCCCCTTCTCATTATGGT
Right flanking sequence: Indices 53031 -- 53530
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATTGTATTATATAGGATATATACAGGTTCG
CCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGACAAATATCACATGGGTTTCTT
GAGCCGCACCAGTAGATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTACC
AATAATAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATTC
TCTAACAAGATACATTATGTAATACTCATTTAGTTGGTAATAGTC
Found at i:52947 original size:40 final size:40
Alignment explanation
Indices: 52902--53024 Score: 201
Period size: 40 Copynumber: 3.0 Consensus size: 40
52892 CTTCTCATTA
*
52902 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGGTGT
1 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
52942 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
1 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
* * *
52982 TGGTGTGTTGGTGTTGGTGTTGGTGTTGTTGATGTTGTTGT
1 TGGTGTGTTGGTGTTGGTG-TGTTGGTGTTGATGTTGGTGT
53023 TG
1 TG
53025 TTGTTGCTGG
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 58 0.74
41 20 0.26
ACGTcount: A:0.02, C:0.00, G:0.47, T:0.51
Consensus pattern (40 bp):
TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
Left flanking sequence: Indices 52402 -- 52901
TTGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGAAAAT
CAAAGAAGATGGGGGAAAAAAATCCCCTCGAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTGAT
ACTTGCTCACCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAATCTCTCGGCAGGGTCATTATC
CGTTGGCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGTTTGTTACTG
GTAGGTTGGCCACCTACTAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCT
ACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCA
CAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATG
GGAGACGAGATCAGAAGTACTAGTGGTGTCACCCCCTTCTCATTA
Right flanking sequence: Indices 53025 -- 53524
TTGTTGCTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCA
GTGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGT
GCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTA
GCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATTGTATTATATAGGATATATACA
GGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGACAAATATCACATGGG
TTTCTTGAGCCGCACCAGTAGATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCT
TCTACCAATAATAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTT
CTATTCTCTAACAAGATACATTATGTAATACTCATTTAGTTGGTA
Found at i:53017 original size:6 final size:6
Alignment explanation
Indices: 52907--53030 Score: 76
Period size: 6 Copynumber: 21.3 Consensus size: 6
52897 CATTATGGTG
* * * * * * *
52907 TGTTGG TGTTGG TG-TGT TGGTGT TGGTGT TGGTGT TGGTG- TGTTGG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT
* * * * * * *
52953 TGTTGG TG-TGT TGGTGT TGATGT TGGTGT TGGTG- TGTTGG TGTTGG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT
* *
52999 TGTTGG TGTTGT TGATGT TGTTGT TGTTGT TG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TG
53031 CTGGTCGCTG
Statistics
Matches: 105, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
5 16 0.15
6 89 0.85
ACGTcount: A:0.02, C:0.00, G:0.46, T:0.52
Consensus pattern (6 bp):
TGTTGT
Left flanking sequence: Indices 52407 -- 52906
CCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGAAAATCAAAG
AAGATGGGGGAAAAAAATCCCCTCGAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTGATACTTG
CTCACCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAATCTCTCGGCAGGGTCATTATCCGTTG
GCGCTTCGCGCCATGGTGGTGGCTCAGCGTTTGTTGGTCTGGTGACAGGGTTTGTTACTGGTAGG
TTGGCCACCTACTAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTACTCG
ATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAA
CCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGGGAGA
CGAGATCAGAAGTACTAGTGGTGTCACCCCCTTCTCATTATGGTG
Right flanking sequence: Indices 53031 -- 53530
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATTGTATTATATAGGATATATACAGGTTCG
CCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGACAAATATCACATGGGTTTCTT
GAGCCGCACCAGTAGATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTACC
AATAATAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATTC
TCTAACAAGATACATTATGTAATACTCATTTAGTTGGTAATAGTC
Found at i:64633 original size:141 final size:141
Alignment explanation
Indices: 64427--64696 Score: 373
Period size: 141 Copynumber: 1.9 Consensus size: 141
64417 CGTGACTGCT
* ** *
64427 ACGGACTCGGGAGTGATTGTGGTGACCACTGACGAAGAAGGCGTGCTTACCACCTCAACGTCGGT
1 ACGGACTCGGGAGTGATTGTGGTGACCACTGACGAAGAAGGCGAGCTTACCACAACAACATCGGT
* * * *
64492 GTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTGCCACTACTTGGATCACTACGGACGAAG
66 GTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGACGAAG
64557 AGGGGACTCAC
131 AGGGGACTCAC
* * * * *
64568 ACGGACTCTGGAGTGGTTGTGGTGACCACTGACGAGGAGGGAC-AGCTCT-CCACAACCACATCG
1 ACGGACTCGGGAGTGATTGTGGTGACCACTGACGAAGAAGG-CGAGCT-TACCACAACAACATCG
* *
64631 GTGTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGACGA
64 GTGTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGACGA
64696 A
129 A
64697 CAAGGTCAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
141 110 0.98
142 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.19
Consensus pattern (141 bp):
ACGGACTCGGGAGTGATTGTGGTGACCACTGACGAAGAAGGCGAGCTTACCACAACAACATCGGT
GTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGACGAAG
AGGGGACTCAC
Left flanking sequence: Indices 63927 -- 64426
CCGGGTGCTTTCATGTCATGAACGGTAGTATCTTCGAGCCCAGCACATTCAATCAAATCGAGCAA
ACAGTACAATTCTACCCTGATTTCTTTGGTACAATGTTACTTGAACCTCCTTATACAGATTTCTT
TGACCCCAGCCTTTTAAAAGTGCGAGGTTTCGGCCATGGGAACGCTATTGGTGTAAGAATGGGGC
AAAGAATTGAGAGTTTTGAATACTCTGGTTCAATGTTGACTATCAGCACTGGTTATGATCTGGTG
TATGCAAACATAGGTGAAGGCTATGATGAGTCGTTATTCCGGGTTGCCGACTTTGATGATTCTGG
GTACGTTTCTGAGAATCAAATTGTCATGTACGATGGCCCGGTACCTGAAGGGTTAGAATGGGCCG
CAAACTGTAATTCGTGTCCACCTCGTCAGGAGGCGCCACTGGAGGTACCTTGTGAAGAGTGCACC
ACTTTTACTTCGACGTGGGTCACAACTGAAGACAACGTGACTGCT
Right flanking sequence: Indices 64697 -- 65196
CAAGGTCAAAGCCAGACCGAATCTGGGGTGGTAGAGGTGACCACCGATGAGCAGGGCCAGCTCAG
TACCACCACGTCGGTGTTTCCTCAGCCGACACCAAATGAATGCGAGGAATGTACTGAGTTTACAA
CTACATTCACCACCACGGATGAAGAAGGAGCCACTAGAACGGACTCGGGGGTTGTCATCGTGACC
ACAGACGAGGAAGGGGCATTAACTACCACCACATCGATGTTCCCCAATGCTGAAGAGTGTCCCGA
GTGTACCGAGTTTACGACAGAGTGGACCATAATCGATGACGAAGGATATACTCGAACTGACTCGG
GGGTAGTTATAGTGAGTACCGACCCAGCGGGAGCGTTAACGACCACCACATCGATGTTCCCCGAT
GCTGAAGAGTGTCCCGAGTGTACTGAGTTTACTACTACATTCACCACCACGGATGAAGAAGGAGC
CACTCGAACGGACTCTGGGGTGGTTATCGTGACCACAGACGAGGA
Found at i:64767 original size:141 final size:142
Alignment explanation
Indices: 64487--64782 Score: 314
Period size: 141 Copynumber: 2.1 Consensus size: 142
64477 CACCTCAACG
* * * *
64487 TCGGTGTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTGCCACTACTTGGATCACTACGGA
1 TCGGTGTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGA
* ** * * * * * *
64552 CGAAGAGGGGACTCACACGGACTCTGGAGTGGTTGTGGTGACCACTGACGAGGAGGGACAGCTCT
66 CGAAAAGGAAACTCACACCGAATCTGGAGTGGTAGAGGTGACCACCGACGAGCAGGGACAGC-CT
64617 CCACAACCA-CA-
130 CCACAACCACCAC
* *
64628 TCGGTGTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGA
1 TCGGTGTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGA
* * * *
64693 CGAACAAGGTCAAAGC-CAGACCGAATCTGGGGTGGTAGAGGTGACCACCGATGAGCAGGGCCAG
66 CGAA-AAGG--AAA-CTCACACCGAATCTGGAGTGGTAGAGGTGACCACCGACGAGCAGGGACAG
**
64757 -CT-CAGTACCACCAC
127 CCTCCACAACCACCAC
64771 GTCGGTGTTTCC
1 -TCGGTGTTTCC
64783 TCAGCCGACA
Statistics
Matches: 127, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
141 69 0.54
142 7 0.06
144 50 0.39
145 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (142 bp):
TCGGTGTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGA
CGAAAAGGAAACTCACACCGAATCTGGAGTGGTAGAGGTGACCACCGACGAGCAGGGACAGCCTC
CACAACCACCAC
Left flanking sequence: Indices 63987 -- 64486
AGCAAACAGTACAATTCTACCCTGATTTCTTTGGTACAATGTTACTTGAACCTCCTTATACAGAT
TTCTTTGACCCCAGCCTTTTAAAAGTGCGAGGTTTCGGCCATGGGAACGCTATTGGTGTAAGAAT
GGGGCAAAGAATTGAGAGTTTTGAATACTCTGGTTCAATGTTGACTATCAGCACTGGTTATGATC
TGGTGTATGCAAACATAGGTGAAGGCTATGATGAGTCGTTATTCCGGGTTGCCGACTTTGATGAT
TCTGGGTACGTTTCTGAGAATCAAATTGTCATGTACGATGGCCCGGTACCTGAAGGGTTAGAATG
GGCCGCAAACTGTAATTCGTGTCCACCTCGTCAGGAGGCGCCACTGGAGGTACCTTGTGAAGAGT
GCACCACTTTTACTTCGACGTGGGTCACAACTGAAGACAACGTGACTGCTACGGACTCGGGAGTG
ATTGTGGTGACCACTGACGAAGAAGGCGTGCTTACCACCTCAACG
Right flanking sequence: Indices 64783 -- 65282
TCAGCCGACACCAAATGAATGCGAGGAATGTACTGAGTTTACAACTACATTCACCACCACGGATG
AAGAAGGAGCCACTAGAACGGACTCGGGGGTTGTCATCGTGACCACAGACGAGGAAGGGGCATTA
ACTACCACCACATCGATGTTCCCCAATGCTGAAGAGTGTCCCGAGTGTACCGAGTTTACGACAGA
GTGGACCATAATCGATGACGAAGGATATACTCGAACTGACTCGGGGGTAGTTATAGTGAGTACCG
ACCCAGCGGGAGCGTTAACGACCACCACATCGATGTTCCCCGATGCTGAAGAGTGTCCCGAGTGT
ACTGAGTTTACTACTACATTCACCACCACGGATGAAGAAGGAGCCACTCGAACGGACTCTGGGGT
GGTTATCGTGACCACAGACGAGGAAGGGGCATTAACTACCACTACATCGATGTTTCCCGATGTCG
AAGAGTGTCCAGAGTGTACGACGTTTACGACAGAGTGGACCACAA
Found at i:65078 original size:147 final size:146
Alignment explanation
Indices: 64835--65283 Score: 485
Period size: 147 Copynumber: 3.1 Consensus size: 146
64825 AACTACATTC
* * * * * * *
64835 ACCACCACGGATGAAGAAGGAGCCACTAGAACGGACTCGGGGGTTGTCATCGTGACCACAGACGA
1 ACCACAACGGATGAAGAAGGAGACACTCGAACGGACTCGGGGGTAGTTATAGTGACCACAGACCA
* *
64900 GGAAGGGGCATTAACTACCACCACATCGATGTTCCCCAATGCTGAAGAGTGTCCCGAGTGTACCG
66 GG-AGGAGCATTAACTACCACCACATCGATGTTCCCCGATGCTGAAGAGTGTCCCGAGTGTACCG
64965 AGTTTACGACAGAGTGG
130 AGTTTACGACAGAGTGG
* * * * * ** *
64982 ACCATAATC-GATGACGAAGGATATACTCGAACTGACTCGGGGGTAGTTATAGTGAGTACCGACC
1 ACCACAA-CGGATGAAGAAGGAGACACTCGAACGGACTCGGGGGTAGTTATAGTGACCACAGA-C
* *
65046 CAGCG-GGAGCGTTAACGACCACCACATCGATGTTCCCCGATGCTGAAGAGTGTCCCGAGTGTAC
64 CAG-GAGGAGCATTAACTACCACCACATCGATGTTCCCCGATGCTGAAGAGTGTCCCGAGTGTAC
* * * **
65110 TGAGTTTACTACTACA-TTC
128 CGAGTTTACGAC-AGAGTGG
* * * * * *
65129 ACCACCACGGATGAAGAAGGAGCCACTCGAACGGACTCTGGGGTGGTTATCGTGACCACAGACGA
1 ACCACAACGGATGAAGAAGGAGACACTCGAACGGACTCGGGGGTAGTTATAGTGACCACAGACCA
* * * *
65194 GGAAGGGGCATTAACTACCACTACATCGATGTTTCCCGATG-TCGAAGAGTGTCCAGAGTGTA-C
66 GG-AGGAGCATTAACTACCACCACATCGATGTTCCCCGATGCT-GAAGAGTGTCCCGAGTGTACC
65257 GACGTTTACGACAGAGTGG
129 GA-GTTTACGACAGAGTGG
65276 ACCACAAC
1 ACCACAAC
65284 CGACGAAGGG
Statistics
Matches: 242, Mismatches: 50, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
145 1 0.00
146 9 0.04
147 225 0.93
148 6 0.02
149 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.19
Consensus pattern (146 bp):
ACCACAACGGATGAAGAAGGAGACACTCGAACGGACTCGGGGGTAGTTATAGTGACCACAGACCA
GGAGGAGCATTAACTACCACCACATCGATGTTCCCCGATGCTGAAGAGTGTCCCGAGTGTACCGA
GTTTACGACAGAGTGG
Left flanking sequence: Indices 64335 -- 64834
CACCTCGTCAGGAGGCGCCACTGGAGGTACCTTGTGAAGAGTGCACCACTTTTACTTCGACGTGG
GTCACAACTGAAGACAACGTGACTGCTACGGACTCGGGAGTGATTGTGGTGACCACTGACGAAGA
AGGCGTGCTTACCACCTCAACGTCGGTGTTTCCACGGCCCACATGCGAGGAGTGTACGACATTTG
CCACTACTTGGATCACTACGGACGAAGAGGGGACTCACACGGACTCTGGAGTGGTTGTGGTGACC
ACTGACGAGGAGGGACAGCTCTCCACAACCACATCGGTGTTTCCACGGCCTACGTGCGAGGAGTG
TACGACATTTACCACTACCTGGACCACCACGGACGAACAAGGTCAAAGCCAGACCGAATCTGGGG
TGGTAGAGGTGACCACCGATGAGCAGGGCCAGCTCAGTACCACCACGTCGGTGTTTCCTCAGCCG
ACACCAAATGAATGCGAGGAATGTACTGAGTTTACAACTACATTC
Right flanking sequence: Indices 65284 -- 65783
CGACGAAGGGACCGTTCAAACGGACTCCGGCGTGGTCGTAGTGACCACGGACCCCGAAGGAAAAT
TGAGTACTACCACGTCGGTATTCCCCCGGCCAACGGACCCGTTTACCACGTTCACCACCACGTGG
ACTACAACCAGGGACGATGGGGGTATTGTAACAGACTCAGGTGTGGTTATCGTCACTACAGACGA
AGAAGGCGGGATTACCACTACCACATCTCGGTTTCCTGAAGACGGGCTAACCACGTACACCACGA
CATGGACCACAACTAGAGAAGACGGCCAATCTGTGACAAAATCGGGAGTGGTTGGGGTGACTACC
GACGAACAAGGCCAGCAGACCACGACGACGTCGGTGTTCCCTGATCCCGCGTGTCCTGAGTGCAC
CGAGTTTACCAGTACGTGGACCACGAACGAGGAGGGCACTATTATTACAGACTCCGGGGTGATCG
TTGTAACCACAGATGATGACGGGGTCTTAACCACGCAGACGTCGC
Found at i:69476 original size:144 final size:142
Alignment explanation
Indices: 69291--69629 Score: 394
Period size: 141 Copynumber: 2.4 Consensus size: 142
69281 TACTTGCGAG
* * *
69291 GAGTGTACGACATTTACCACTACCTGGACCACCAC-GAACGAACAAGGCCAAAGCCAGACCGAAT
1 GAGTGTACGACATTTACCACCACATGGACCACCACAG-ACGAACAAGG--AAACCCAGACCGAAT
* * ** * * *
69355 CTGGGGTGGTAGAGGTGACCACCGATGAACAGGGTCAGATCACTACAACTACCTCAGTGTTCCCA
63 CTGGCGTAGTAGAAATGACCACCGATGAACAGGGCCAGATCACTACAACCACCTCAGTATTCCCA
69420 CAGCCCACGTGTGAA
128 CAGCCCACGTGTGAA
* * * * * * * *
69435 GAGTGTACGACTTTTACAACGACTTGGACTACCACAGACGAA-GAGGGAACCCAGACCGACTCTG
1 GAGTGTACGACATTTACCACCACATGGACCACCACAGACGAACAAGGAAACCCAGACCGAATCTG
* * * * * *
69499 GCGTAGTTGAAATTACCACCGATGAACAGGGCCAGCTCACTACTACCACCTCGGTATTTCCACAG
66 GCGTAGTAGAAATGACCACCGATGAACAGGGCCAGATCACTACAACCACCTCAGTATTCCCACAG
69564 CCCACGTGTGAA
131 CCCACGTGTGAA
* *
69576 GAATGTACGACATTCACCACCACATGGACCACCACAGACGAACAAGGACAACCC
1 GAGTGTACGACATTTACCACCACATGGACCACCACAGACGAACAAGGA-AACCC
69630 CATACAGACT
Statistics
Matches: 161, Mismatches: 31, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
141 114 0.71
142 3 0.02
143 8 0.05
144 35 0.22
145 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.16
Consensus pattern (142 bp):
GAGTGTACGACATTTACCACCACATGGACCACCACAGACGAACAAGGAAACCCAGACCGAATCTG
GCGTAGTAGAAATGACCACCGATGAACAGGGCCAGATCACTACAACCACCTCAGTATTCCCACAG
CCCACGTGTGAA
Left flanking sequence: Indices 68791 -- 69290
AATTTGAACCCGGTTCGACTGGACTCTTCAGGATGCCCGACGATCTTTACGAGCACAAAATTACC
GTACGGGGCTTCGGTCAGGGTAATGCTCTAGGGGCAGATTTCGGGCCAATCGAACGTTTCAACTA
CTCGGGCTCAACGTTGATTCTAGAAAATCTGTGGGGGGCAGCGATTGCAGATATTGGCGAAGGAT
ACGACGAATCGTTGTTCCGGATAGCCGACGAAGAACACGAAGATTGGGTTGACGAAAACTACATT
TTCTTGTACGACGGCCCAGTACCCGAAGGGTTAGAATGGGCATCTAATTGCAACGCTTGTCCGAC
CCCATTGGCGGCGCCACTGGAGGTGCCTTGTGAAGAATGCACCACTTTTACTTCGACGTGGGCCA
CAACCGAGAACGAGGTCACTGCTACGGACTCTGGAGTGATTGTGGTGACCACTGACGAGGATGGA
CAGCTCTCCACAACCACATCGGTGTTTCCACGGCCTACTTGCGAG
Right flanking sequence: Indices 69630 -- 70129
CATACAGACTCGGGCATCGTGGAGGTGACCACCGACGAACAGGGGGAACTCAGCACCACCACGTC
CTTGTTCCCTTCGCCCACCGAGTGTGAGGACTGTACGGAATTTACGACGACTTTCACCACCACGG
ATGAAGAGGCCACTCGAACGGACTCGGGGGTTGTTATCGTGACCACGGACGAGGAAGGAGCTTTG
ACCACCACTACCTCATTGTTCCCCAGCCCCGAGGAGTGTCCCGAGTGCACGACATTCACCACGGA
ATGGACCACAACCGGTGAGGACGGTTCCACCGAGACAGACTCTGGGCTTGTGATAGTGTCCACCG
GCCCAGGTGGGGTGCTCACCACCACGACCTCGTTGTTCCCCAACCCCGAGGAGTGTCCAGAGTGC
ACTACTTTTACTACTGATTGGACGACAACTGAAGACGGGGTTGAACACACGGACTCTGGGGTGGT
CATAGTGACCACAGATCCCGAGGGAGTGTTGAGTACCATGACGTC
Found at i:71262 original size:24 final size:24
Alignment explanation
Indices: 71209--71311 Score: 116
Period size: 24 Copynumber: 4.3 Consensus size: 24
71199 GTAGCCACGA
* * * *
71209 CAGACGGCCAGGGTAACGCGGAGA
1 CAGACGACCAAGGCAACGCGGAGC
* * *
71233 CTGACGACCAGGGTAACGCGGAGC
1 CAGACGACCAAGGCAACGCGGAGC
*
71257 CAGACGACCAAGGCAACACGGAGC
1 CAGACGACCAAGGCAACGCGGAGC
*
71281 CAGACGACCAAGGCAACGCTGAGC
1 CAGACGACCAAGGCAACGCGGAGC
*
71305 CAAACGA
1 CAGACGA
71312 TCCCGGATTC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.33, C:0.30, G:0.33, T:0.04
Consensus pattern (24 bp):
CAGACGACCAAGGCAACGCGGAGC
Left flanking sequence: Indices 70709 -- 71208
GTGCACCGAATACACCAGTACCTGGATTGATGGAGGCGTCACCAATTCTGGCGTAGTCATCGTGA
CCACCGACTCTACAGGGCAGACGTTCACCAGCACATCGGTGTTCCCAGGGCCACCGGAGCTCACC
ACGTACACCACCACGTGGACAGACAACGGAGACACGGGTTCCGGGGTGGTTATCGTGACCACTGA
CGAGAACGGCCAGGCGGTGACTACAACCTCGGAGTTCCAAGGGCTCACCACACACACCACGCCCT
GGACGGTTGATGGCGAGACTGAATCCGGTGTGGTTACGGTTTCTGTCACCACAGACGAAGACGGT
GACGTAGTTACCACGACCTCGCCCTTCCCTGAGCCATCAGAGTTGACAAGTTACACTACGACCTG
GACAACAGAGGGCGAGACCAACTCGGGAGTGGTCATTGTCACGACTGACCACGAGGGCCAGGCTG
TGACCTCGACCTCAGTGTTTCCCATAGACCCACCGGTAGCCACGA
Right flanking sequence: Indices 71312 -- 71811
TCCCGGATTCACCACACCGAAGACAGTCACAGAAGAGAACGACAACCACCCCGCGGAAACGGGGC
CTTTTGGGGTGACTACTACGGAAGAAGGTGAGCCTACACTCGGGATAACGGGCGGAGGTGGGCAG
CCCGACGACGGAGCCATACCACCTGCTCCAACCACAGCTCCTGGTGGTTCTCCGGTCTCTACACC
GTTGGTGTACCCAGACCAACAGGAGCCTAGCCAGCCGGGCCAGGCTGAGGCCCCAGGAGTTATCC
TTCCGGTTCCAGAGGGCCAGGAAAATGTGGAACCTGGCCAGGAAAGCGAGGAACCCGGCCTGGAA
GCCGTGGAACCTGGTCTGGAAAATGAGGAACCTGGCCTGGAAAATGAGGAACCTGCCCACGACGA
CAATCGCTCTGGACCAGCTATGGGGTCAGTAGGCCCAACAATGGATCCAATAGCTACTCAAGAGA
CTCTGGTTGCGCCCACAGCGGTTGGACCGTCGGTCATTGTGGCCG
Found at i:71612 original size:21 final size:21
Alignment explanation
Indices: 71586--71691 Score: 113
Period size: 21 Copynumber: 5.0 Consensus size: 21
71576 GGTTCCAGAG
* *
71586 GGCCAGGAAAATGTGGAACCT
1 GGCCTGGAAAATGAGGAACCT
* ** *
71607 GGCCAGGAAAGCGAGGAACCC
1 GGCCTGGAAAATGAGGAACCT
*** *
71628 GGCCTGGAAGCCGTGGAACCT
1 GGCCTGGAAAATGAGGAACCT
*
71649 GGTCTGGAAAATGAGGAACCT
1 GGCCTGGAAAATGAGGAACCT
71670 GGCCTGGAAAATGAGGAACCT
1 GGCCTGGAAAATGAGGAACCT
71691 G
1 G
71692 CCCACGACGA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 70 1.00
ACGTcount: A:0.30, C:0.22, G:0.36, T:0.12
Consensus pattern (21 bp):
GGCCTGGAAAATGAGGAACCT
Left flanking sequence: Indices 71086 -- 71585
ACACTACGACCTGGACAACAGAGGGCGAGACCAACTCGGGAGTGGTCATTGTCACGACTGACCAC
GAGGGCCAGGCTGTGACCTCGACCTCAGTGTTTCCCATAGACCCACCGGTAGCCACGACAGACGG
CCAGGGTAACGCGGAGACTGACGACCAGGGTAACGCGGAGCCAGACGACCAAGGCAACACGGAGC
CAGACGACCAAGGCAACGCTGAGCCAAACGATCCCGGATTCACCACACCGAAGACAGTCACAGAA
GAGAACGACAACCACCCCGCGGAAACGGGGCCTTTTGGGGTGACTACTACGGAAGAAGGTGAGCC
TACACTCGGGATAACGGGCGGAGGTGGGCAGCCCGACGACGGAGCCATACCACCTGCTCCAACCA
CAGCTCCTGGTGGTTCTCCGGTCTCTACACCGTTGGTGTACCCAGACCAACAGGAGCCTAGCCAG
CCGGGCCAGGCTGAGGCCCCAGGAGTTATCCTTCCGGTTCCAGAG
Right flanking sequence: Indices 71692 -- 72191
CCCACGACGACAATCGCTCTGGACCAGCTATGGGGTCAGTAGGCCCAACAATGGATCCAATAGCT
ACTCAAGAGACTCTGGTTGCGCCCACAGCGGTTGGACCGTCGGTCATTGTGGCCGGTGGAGGCCC
CGTGAACGAGGTCTATCTGGCCCTTTTCGTTGTGGCAATGGTTCCAGTTTTGTTTTTGTAATTGT
ACATGAATATTGAGCTATTTCGTGAGGAGCAAGCAAGACAAGCTGTATTAGCTGCCTCTAAAAGT
AAATCGAGGCTGAATTGACCGGTGGCGGTGGCCTCCGTGGTAGAAAGTTGGTTGGGTATAAAACG
TGACCTGAAGTCACGTGACTTTTCTTGAATGGACAGAGGTGCCTCTGGGGACCCCGTTTCCCGAA
ATTTTTTTCAGCGAAGCAGCAGCGCCAGGGTGGTCTCGGGGACGTTCTCAAGCGATGTGCGTTTG
TTCGTCTCCATCGAGTCACCCCCAGGGCAGTTATAGGGTAACCAC
Done.