sallet_3.scaffold.fasta.s107.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold67
Parameters: 2 7 7 80 10 50 500
Length:  441489

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127--1158	10	3.2	10	100	0	64	0	28	9	62	1.26
2161--2186	13	2.0	13	100	0	52	15	23	23	38	1.92
4460--4498	19	2.1	19	85	9	53	30	25	33	10	1.89
4796--4829	8	4.2	8	92	0	59	26	0	47	26	1.53
5287--5320	16	2.1	16	100	0	68	26	17	44	11	1.83
5311--5354	15	2.9	15	100	0	88	38	13	40	6	1.71
5422--5473	14	3.7	14	81	0	59	0	15	38	46	1.46
5916--5986	8	9.6	8	79	14	73	11	0	49	39	1.39
5919--5968	13	4.1	13	77	15	61	12	0	46	42	1.41
5932--5982	22	2.3	22	80	12	59	11	0	49	39	1.40
5932--5997	15	4.3	16	81	14	68	10	0	50	39	1.37
6244--6270	14	1.9	14	100	0	54	7	0	51	40	1.30
6276--6310	15	2.5	14	90	9	54	17	5	60	17	1.55
7786--7854	15	4.5	15	90	1	93	10	15	42	31	1.81
9250--9287	18	2.1	19	95	5	69	2	76	10	10	1.12
9268--9306	12	3.2	12	88	0	60	2	74	5	17	1.12
12656--12708	11	4.8	11	100	0	106	45	9	35	9	1.69
13736--13795	15	4.0	15	86	6	86	8	5	38	48	1.55
14519--14640	12	10.2	12	78	7	104	9	31	39	19	1.83
14588--14712	36	3.5	35	84	6	153	11	33	32	22	1.89
14696--14843	18	8.2	18	98	0	287	6	33	38	22	1.79
14559--14712	12	12.8	12	80	10	136	12	31	33	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17646--17698	15	3.7	15	95	5	92	7	13	37	41	1.72
23696--23737	13	3.5	13	81	18	63	23	7	52	16	1.68
24162--24192	13	2.4	13	100	0	62	38	38	16	6	1.74
30657--30716	14	4.3	14	76	4	59	13	18	31	36	1.89
30657--30716	28	2.1	28	87	6	86	13	18	31	36	1.89
30748--30783	14	2.6	14	100	0	72	16	22	27	33	1.95
30922--30965	16	2.8	16	96	0	79	11	52	11	25	1.70
35616--35671	18	3.1	18	100	0	112	32	51	16	0	1.44
36638--36666	12	2.4	12	100	0	58	24	20	41	13	1.89
40733--40822	13	6.9	13	83	0	99	25	54	2	17	1.55
40784--40835	26	2.0	26	84	0	68	30	53	1	13	1.50
40790--40841	13	4.0	13	89	0	50	30	51	1	15	1.54
43279--43325	12	3.9	12	88	0	76	21	17	53	8	1.70
43271--43329	24	2.5	24	94	0	100	27	15	49	8	1.73
49274--49316	22	1.9	22	85	4	59	41	25	16	16	1.88
51332--51395	16	4.2	16	79	15	66	48	21	17	12	1.80
51641--51688	16	2.9	17	85	14	57	14	52	6	27	1.66
51649--51688	16	2.5	17	92	8	66	12	52	5	30	1.60
52004--52046	16	2.7	16	89	7	61	51	11	30	6	1.65
52149--52216	7	9.9	7	83	1	75	0	38	0	61	0.96
52154--52213	21	2.9	21	94	0	111	0	38	0	61	0.96
52149--52216	14	4.9	14	83	1	93	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52237--52274	15	2.5	15	91	0	58	18	50	5	26	1.68
52500--52559	19	3.2	19	92	0	93	0	48	8	43	1.33
53749--53815	27	2.5	28	87	7	102	16	26	40	16	1.89
56028--56052	12	2.1	12	100	0	50	16	16	52	16	1.76
57595--57699	18	5.6	19	87	4	101	19	22	38	20	1.94
57610--57698	18	4.9	18	91	0	124	21	24	32	21	1.98
58108--58182	33	2.3	33	83	4	89	4	29	32	34	1.76
58140--58248	21	5.2	21	86	2	130	6	31	29	33	1.83
58409--58473	15	4.3	15	86	0	94	1	36	18	43	1.60
58419--58484	15	4.4	15	76	14	64	3	36	15	45	1.61
58418--58476	30	2.0	30	96	0	109	1	35	16	45	1.58
58459--58509	24	2.1	24	85	7	68	1	39	15	43	1.58
68409--68435	14	1.9	14	100	0	54	7	59	0	33	1.25
75642--75693	9	5.8	9	90	0	77	0	36	5	57	1.23
75631--75691	27	2.3	27	85	0	77	1	36	8	54	1.40
77177--77201	9	2.8	9	100	0	50	0	24	52	24	1.48
77175--77230	12	4.9	12	76	10	55	0	30	42	26	1.56
77430--77462	12	2.8	12	95	0	57	6	33	33	27	1.81
84308--84334	9	3.0	9	100	0	54	22	11	33	33	1.89
86269--86298	14	2.1	14	93	0	51	33	23	16	26	1.96
86269--86334	16	4.2	16	80	3	64	37	22	15	24	1.92
91724--91798	16	4.7	16	95	3	125	26	53	0	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92718--92785	15	4.7	15	83	7	88	7	27	25	39	1.82
113895--113960	24	2.8	24	88	4	98	33	9	36	21	1.85
114075--114118	15	2.9	15	86	0	52	15	13	34	36	1.87
114088--114116	15	1.9	15	100	0	58	17	13	27	41	1.87
120308--120332	9	2.8	9	100	0	50	12	24	32	32	1.91
120324--120367	18	2.4	18	92	0	70	11	20	40	27	1.86
122050--122080	9	3.4	9	90	0	53	45	0	54	0	0.99
181646--181704	18	3.3	18	97	0	109	28	25	38	6	1.81
181653--181750	18	5.4	18	90	0	97	25	20	39	14	1.90
181646--181750	36	2.9	36	82	0	111	25	20	40	13	1.89
207886--207924	15	2.9	14	85	14	55	7	48	7	35	1.61
234784--234818	12	2.9	12	100	0	70	17	25	17	40	1.90
266809--266903	6	16.3	6	83	6	97	14	32	17	34	1.91
266824--266903	9	9.2	9	81	8	67	15	33	17	33	1.91
266814--266903	15	6.0	15	85	0	108	15	33	17	33	1.92
266925--266964	3	13.3	3	89	0	53	5	30	30	35	1.79
276605--276639	12	2.9	12	86	0	52	5	42	45	5	1.51
279587--279640	12	4.5	12	85	0	63	11	31	40	16	1.84
304003--304045	21	2.0	21	86	0	59	18	34	41	4	1.71
340174--340219	21	2.1	22	92	4	76	10	17	47	23	1.79
342826--342865	14	2.9	14	88	0	62	22	5	57	15	1.57
345286--345334	24	2.0	24	84	7	64	28	30	32	8	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350054--350083	9	3.3	9	95	0	51	23	63	13	0	1.29
352061--352087	14	1.9	14	100	0	54	29	7	55	7	1.55
352099--352140	21	2.0	21	86	9	59	19	2	64	14	1.39
352101--352148	22	2.2	21	82	10	53	20	2	62	14	1.42
352766--352803	12	3.0	13	84	3	51	26	34	7	31	1.85
353513--353537	13	1.9	13	100	0	50	20	32	8	40	1.81
356051--356101	12	4.3	12	77	5	50	27	31	9	31	1.89
356148--356195	17	2.8	17	87	3	60	0	29	18	52	1.46
356145--356195	9	5.9	9	86	6	61	0	27	17	54	1.43
356892--356939	12	4.0	12	91	0	69	31	37	18	12	1.88
373502--373550	15	3.3	15	76	0	53	24	51	22	2	1.59
373683--373709	9	3.0	9	100	0	54	11	55	22	11	1.66
424337--424404	24	2.8	23	82	8	73	29	38	22	10	1.87

Tables:   1

The End!