Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold67
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 441489
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Found at i:1142 original size:10 final size:10
Alignment explanation
Indices: 1127--1158 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
1117 ATCCGGTATT
1127 TTTGTCCTTC
1 TTTGTCCTTC
1137 TTTGTCCTTC
1 TTTGTCCTTC
1147 TTTGTCCTTC
1 TTTGTCCTTC
1157 TT
1 TT
1159 CGACTGCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.09, T:0.62
Consensus pattern (10 bp):
TTTGTCCTTC
Left flanking sequence: Indices 627 -- 1126
GAACCGCACCGTGCCGTCGGGCATCAACCCCTTGCCCTGGGTGGCTCTGATCTTGCCACAGAGGT
TGGTCTTGCCGGACTTACAGAACTTGCACTCGCCACACTCGGGGGTGTAGAGACAGATCACCAGG
TCGCCCACCTTGACGTTGGTGACCCCCTCGCCCACCAGCTCGACGATACCAGCGCCCTCGTGGCC
AAACACCACGGGGAACTCGCCCTCGGGGTCAGCACCGGAGAGCGTGTACGCGTCAGTGTGGCAGA
CACCGGTGTGGGTGATCTTGATGCGCACCTCGTGGGCCTTCGGGGGCGCCACCTCGATCTCCTCG
ATGGTCAACGGCTTGCCCGCCTCCCACGCAACAGCAGCCTTACAAGTGATGGTCTATGGTTAGTC
TATGCTATGGTATATAGGGTCAATTGGTGAGTTTCAGTGGGTTGGTGGGTTGTCTGGTGAAATTG
ATCAATTAGTAAGCCAATCCTGTCAATTTCCTGTGATCCGGTATT
Right flanking sequence: Indices 1159 -- 1658
CGACTGCTCCTGTCCTCTCCCTGTCCTGTCCTCTCTTTTCCTCTCCTCTTCGCCTCTGCTCGTCT
ATTTTTCAGGGGCTAGTGTGGTTTCCACCGATGACCTGAAAATAGACGACAGTCACCGCAGGACG
AAAACAGCAGTGTCATGCACTCAACAATCCCCACTGAAACAAGCATACTGCCCAATTGGCCCCGC
GCAATGGACCGGTATCCATCCCCGGACGGTACCTACCTTTCCTTCGGTCGACATGATTCGTTTGT
CGGAGGTTGCCGCCGTAGGCTTAAATCATGGGGCCGTGTGCAGGCACTCACGTGGATAGCGCTAA
CAGCGGAGGGACGAGGGGAACAGCCTCCCCGTTTAGGACAAGGGATGCGAGAGGTTATCTCGAAG
CGAGGAGGGGAGCGTGGTGATCGTTGTCGACAATGGCGACGATCAAACGTAGATGGCGGGGTCGC
TACCGGCCACTCGCCCGGATGTGGCCCGTTACCCCACAGTTTGGC
Found at i:2179 original size:13 final size:13
Alignment explanation
Indices: 2161--2186 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2151 TGTAATCCGC
2161 CTATCTTGTGGCA
1 CTATCTTGTGGCA
2174 CTATCTTGTGGCA
1 CTATCTTGTGGCA
2187 GTTTCACCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (13 bp):
CTATCTTGTGGCA
Left flanking sequence: Indices 1661 -- 2160
AAAAAGTGCCCAGATGTCGTCATCGGGGTTTGAGCCAAGGTGAAAAGTTAGGTGGTATATACTGG
TTGTCTAGCCACGCTTGCGTCGGACTTGGCACGGCACCACCAGCGGAGTTGGTCGATGGCAACAC
ATGGTCGCAACCTTACGAGACTGGCGATATATAACGAGACTACGTACGGTACCTTGGTGGTTGGT
GGGCGGTGGGACCACCTTGGTGGTTACCCAAGTGTACGCGATGACGTCGACGACCAAAATAGAAA
CCCACTGCAAACCCTGAACACGCGACTCCGGGGTAGGGTGGTTTCTCCGACACCATTACCTCATC
CAGACAACAATGGGGTGGTTTGTGCCGCGAGCGGAGTTTTCTTGGCTCGTATGTCCGCGTTTACC
CCTCGTTATTTATAGATAGGGGTCGGGTTTGCTACGGGATAGTGGGACAGTGGTGCGCGGGTTCG
ACCCGTGAGTGGTGCCTGGGACTGGCGGTTACCCGTGTAATCCGC
Right flanking sequence: Indices 2187 -- 2686
GTTTCACCTACAATGGCCCGGTGCTCTGCAGCGCACCGCGCTCCCATCTCGTACAAAGGGGTTAC
TACGAGATTGTGGGTCATTCACTGACCAAACGCCGTGGCCCGATATTATTGCTCGTGGAGCAAGT
ACCCGCGTTGCTGCGTTTTTTGTGTAAACAAAGAGATTAAGCCCGATTTGCCTGCAAGCCCCCAA
CAAGCAACCACGGAGCCCGCGAGGATTGCCGGTTGCTACGTCACGTCAACGTCAGTACCTGTGTC
AGTGACACCGGCGCGTCCATTATCTATTTACCTGTGCTTCGTATCTGTAGGGAGCGCTGTTGTTC
GTGGAAAAACCCGCTGCACCATGACATCAGCGTAAAACACCCGCGAACATTTTCCGAGGGGTCAG
ATGACACCACCCCGCCCGTACCTGAGCAGCGGTGCCAAGTCGTCTGGGTCCACCCACGGGGGTGA
GGGGTACCCACACCCTCCCGGGGGAGGCTGTCCTGTATGCGACCG
Found at i:4497 original size:19 final size:19
Alignment explanation
Indices: 4460--4498 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4450 AGCGTCGGAG
*
4460 GCCGCGAAGTTGAGCACGA
1 GCCGCGAAGTTGAACACGA
4479 GCCGC-AAGTTGAACAACGA
1 GCCGCGAAGTTGAAC-ACGA
4498 G
1 G
4499 ATCACCTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.31, C:0.26, G:0.33, T:0.10
Consensus pattern (19 bp):
GCCGCGAAGTTGAACACGA
Left flanking sequence: Indices 3960 -- 4459
CAAACGGGGAGTTCTCGGTAACGGGCTGGGCCAACTGGGGCGCCAGCCGCAGCCACGCCGCCACC
CGCTGCGCGTCGGTGAGCGTGATGTAGATCTGCTCCGCCGTGGTGTTGAACACCGGCTCCAAGTG
GAGCGTCAGCGTGTTGACCACCTTTGGCTTGTGTGCAGGCGCGGGTGTGGACTTGGTGGTGGTAG
TAGAAGCGCTCGAGCTCGAGCTGGCGGGCTTCGACCCGGCCTGGTTGGCCTTGGTGTACTGCGAC
TGCACCTTGTCCGCCTCCAACTGGATGTCGCTGGCGTTGGTCTCGATCAAGTCGGGCCCAAACCG
CAGCAAAAGCTTGCGGAGCTCGGGCACAAGCAATTTCTTCACCACAAGCCGCAAGTGGTCGTTCT
CCGCGGTCTCGTCGTGGAGCAGCACCTCGAACTGGAGCTCGTCCTCCTCGGTGTCGTAGGCCAAT
TCCGGCACAGTGATCGAGCCCTTGCCCGAGTTGTGAGCGTCGGAG
Right flanking sequence: Indices 4499 -- 4998
ATCACCTTGCCCTTGCGCTGGGACACATCGACATCGCCCTCCACCAGCAGCACCGCGGTGATCTG
GGCGGAGTCGTCGCCATTCGTTTGTTTGAGCCCGGTCAACTTGTCGTTGAAGTAGTCCCGTGACC
ACCCCAAGCAGTTTTTGTCGACCCAGTGCCAGTTGTTCGGGTTGTTGACCACCATTGTTGCGGAG
CGGTGGGGTCTGGCTGCTTTTTCAGTGGTAGTGGAACGTTCGAGAAGGTCACGTGAGAGAACGAG
AGAGAATCTACGGAGGCAACCAAACGGGCGCTGTTTCGTGAAGTGGTGAAGTAGTGAAGTGGTGA
AGTGGTTCGTGAAGTGGTTTCGTAGCCAGCCCGCGTTCCGTCGGGCAGTTGTAGTGTTCTGGTTA
TTTTCTGGTTATCCCCGTATATTTTTTGGTTCCCGACATCCAGGCCGTCACACCCACGTCAGACG
GACATGCCTCTACGTAGTCGCCTAGTCGCCTAGTCGCCCAGAAGG
Found at i:4809 original size:8 final size:8
Alignment explanation
Indices: 4796--4829 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
4786 GCGCTGTTTC
4796 GTGAAGTG
1 GTGAAGTG
*
4804 GTGAAGTA
1 GTGAAGTG
4812 GTGAAGTG
1 GTGAAGTG
4820 GTGAAGTG
1 GTGAAGTG
4828 GT
1 GT
4830 TCGTGAAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.47, T:0.26
Consensus pattern (8 bp):
GTGAAGTG
Left flanking sequence: Indices 4296 -- 4795
TGCGGAGCTCGGGCACAAGCAATTTCTTCACCACAAGCCGCAAGTGGTCGTTCTCCGCGGTCTCG
TCGTGGAGCAGCACCTCGAACTGGAGCTCGTCCTCCTCGGTGTCGTAGGCCAATTCCGGCACAGT
GATCGAGCCCTTGCCCGAGTTGTGAGCGTCGGAGGCCGCGAAGTTGAGCACGAGCCGCAAGTTGA
ACAACGAGATCACCTTGCCCTTGCGCTGGGACACATCGACATCGCCCTCCACCAGCAGCACCGCG
GTGATCTGGGCGGAGTCGTCGCCATTCGTTTGTTTGAGCCCGGTCAACTTGTCGTTGAAGTAGTC
CCGTGACCACCCCAAGCAGTTTTTGTCGACCCAGTGCCAGTTGTTCGGGTTGTTGACCACCATTG
TTGCGGAGCGGTGGGGTCTGGCTGCTTTTTCAGTGGTAGTGGAACGTTCGAGAAGGTCACGTGAG
AGAACGAGAGAGAATCTACGGAGGCAACCAAACGGGCGCTGTTTC
Right flanking sequence: Indices 4830 -- 5329
TCGTGAAGTGGTTTCGTAGCCAGCCCGCGTTCCGTCGGGCAGTTGTAGTGTTCTGGTTATTTTCT
GGTTATCCCCGTATATTTTTTGGTTCCCGACATCCAGGCCGTCACACCCACGTCAGACGGACATG
CCTCTACGTAGTCGCCTAGTCGCCTAGTCGCCCAGAAGGCTTAAGGTTAGACTCTCGTTTCACCG
CGCCACCTTGGTGGTTGGCCCAGCCACCACGAGGCCCCTGTATCAGGTTTAAGGTTTACGACTGG
TCTCGCGAACGGCACTGCCGGGATCGCGGTGCATGACGCTGTCTCCGAGTCGGGCCTGGCCAACA
ATGGTGGGTGGTGCAGTGAGCGCTCCGTATGCTGTGTAGCGACGCTTCTAGGCTCGTATCCGCGA
AGCCACAGGGCACACACAATAGCCCGCGTGATCGTGAGTGATAACGGTGAGGAGACGGCAGGTAG
GAGACGGGCTGTAAGCAGGACGGGCTGTAAGCAGGAGACGAGTAA
Found at i:5308 original size:16 final size:16
Alignment explanation
Indices: 5287--5320 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
5277 GCAGGTAGGA
5287 GACGGGCTGTAAGCAG
1 GACGGGCTGTAAGCAG
5303 GACGGGCTGTAAGCAG
1 GACGGGCTGTAAGCAG
5319 GA
1 GA
5321 GACGAGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.44, T:0.12
Consensus pattern (16 bp):
GACGGGCTGTAAGCAG
Left flanking sequence: Indices 4787 -- 5286
CGCTGTTTCGTGAAGTGGTGAAGTAGTGAAGTGGTGAAGTGGTTCGTGAAGTGGTTTCGTAGCCA
GCCCGCGTTCCGTCGGGCAGTTGTAGTGTTCTGGTTATTTTCTGGTTATCCCCGTATATTTTTTG
GTTCCCGACATCCAGGCCGTCACACCCACGTCAGACGGACATGCCTCTACGTAGTCGCCTAGTCG
CCTAGTCGCCCAGAAGGCTTAAGGTTAGACTCTCGTTTCACCGCGCCACCTTGGTGGTTGGCCCA
GCCACCACGAGGCCCCTGTATCAGGTTTAAGGTTTACGACTGGTCTCGCGAACGGCACTGCCGGG
ATCGCGGTGCATGACGCTGTCTCCGAGTCGGGCCTGGCCAACAATGGTGGGTGGTGCAGTGAGCG
CTCCGTATGCTGTGTAGCGACGCTTCTAGGCTCGTATCCGCGAAGCCACAGGGCACACACAATAG
CCCGCGTGATCGTGAGTGATAACGGTGAGGAGACGGCAGGTAGGA
Right flanking sequence: Indices 5321 -- 5820
GACGAGTAAGCAGGAGACGAGTAAGCAGGAGACGGATGGTACCAGGAGACGGATGGTCTGGTGTG
CTGCGTTGGGATCCTTAGGAGTCACCAGTGTCGTAATGTTGGTGTTTTGGTGTTCGTGTCCTGGT
GTTGCTGTCCTGGTGTCGGTGTCTTAGTCCCCTGTGCCTGCTGCCTACGGATCTACTTCCCCACT
TTCTCGGCCCATTCTCACCAGTGTCTGTTTCAACAATGGTTTCGGATTGTATTACGCGATTAGTC
ACGAGAATCCCCGGTTATGAGGCATTTTCCAGAGGATGTGCAGTGGAAAGATACCCGAGGCCTCG
GGAATGCCTATCAGGCCATCCCCGCGGCGTCGACGGACTCGGTGGCGGTCGCACATGCGGTTTCG
ACGCAGAATGTCGACGGGTATGCACCACACGTTAGAGCGATTGGCGAAGCCGGTGGTCGCGACGT
GCGTTTCGTCTGATAGCACTAGTGCACGGCGTCGCCCGGTGCCTG
Found at i:5331 original size:15 final size:15
Alignment explanation
Indices: 5311--5354 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
5301 AGGACGGGCT
5311 GTAAGCAGGAGACGA
1 GTAAGCAGGAGACGA
5326 GTAAGCAGGAGACGA
1 GTAAGCAGGAGACGA
5341 GTAAGCAGGAGACG
1 GTAAGCAGGAGACG
5355 GATGGTACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.41, T:0.07
Consensus pattern (15 bp):
GTAAGCAGGAGACGA
Left flanking sequence: Indices 4811 -- 5310
AGTGAAGTGGTGAAGTGGTTCGTGAAGTGGTTTCGTAGCCAGCCCGCGTTCCGTCGGGCAGTTGT
AGTGTTCTGGTTATTTTCTGGTTATCCCCGTATATTTTTTGGTTCCCGACATCCAGGCCGTCACA
CCCACGTCAGACGGACATGCCTCTACGTAGTCGCCTAGTCGCCTAGTCGCCCAGAAGGCTTAAGG
TTAGACTCTCGTTTCACCGCGCCACCTTGGTGGTTGGCCCAGCCACCACGAGGCCCCTGTATCAG
GTTTAAGGTTTACGACTGGTCTCGCGAACGGCACTGCCGGGATCGCGGTGCATGACGCTGTCTCC
GAGTCGGGCCTGGCCAACAATGGTGGGTGGTGCAGTGAGCGCTCCGTATGCTGTGTAGCGACGCT
TCTAGGCTCGTATCCGCGAAGCCACAGGGCACACACAATAGCCCGCGTGATCGTGAGTGATAACG
GTGAGGAGACGGCAGGTAGGAGACGGGCTGTAAGCAGGACGGGCT
Right flanking sequence: Indices 5355 -- 5854
GATGGTACCAGGAGACGGATGGTCTGGTGTGCTGCGTTGGGATCCTTAGGAGTCACCAGTGTCGT
AATGTTGGTGTTTTGGTGTTCGTGTCCTGGTGTTGCTGTCCTGGTGTCGGTGTCTTAGTCCCCTG
TGCCTGCTGCCTACGGATCTACTTCCCCACTTTCTCGGCCCATTCTCACCAGTGTCTGTTTCAAC
AATGGTTTCGGATTGTATTACGCGATTAGTCACGAGAATCCCCGGTTATGAGGCATTTTCCAGAG
GATGTGCAGTGGAAAGATACCCGAGGCCTCGGGAATGCCTATCAGGCCATCCCCGCGGCGTCGAC
GGACTCGGTGGCGGTCGCACATGCGGTTTCGACGCAGAATGTCGACGGGTATGCACCACACGTTA
GAGCGATTGGCGAAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGTGCACGGCGTCG
CCCGGTGCCTGGGAGGTGAAACACACAATGAACGGAGGAGAAAGA
Found at i:5439 original size:14 final size:14
Alignment explanation
Indices: 5422--5473 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
5412 AGTGTCGTAA
**
5422 TGTTGGTGTTTTGG
1 TGTTGGTGTCCTGG
*
5436 TGTTCGTGTCCTGG
1 TGTTGGTGTCCTGG
*
5450 TGTTGCTGTCCTGG
1 TGTTGGTGTCCTGG
*
5464 TGTCGGTGTC
1 TGTTGGTGTC
5474 TTAGTCCCCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.00, C:0.15, G:0.38, T:0.46
Consensus pattern (14 bp):
TGTTGGTGTCCTGG
Left flanking sequence: Indices 4922 -- 5421
CGACATCCAGGCCGTCACACCCACGTCAGACGGACATGCCTCTACGTAGTCGCCTAGTCGCCTAG
TCGCCCAGAAGGCTTAAGGTTAGACTCTCGTTTCACCGCGCCACCTTGGTGGTTGGCCCAGCCAC
CACGAGGCCCCTGTATCAGGTTTAAGGTTTACGACTGGTCTCGCGAACGGCACTGCCGGGATCGC
GGTGCATGACGCTGTCTCCGAGTCGGGCCTGGCCAACAATGGTGGGTGGTGCAGTGAGCGCTCCG
TATGCTGTGTAGCGACGCTTCTAGGCTCGTATCCGCGAAGCCACAGGGCACACACAATAGCCCGC
GTGATCGTGAGTGATAACGGTGAGGAGACGGCAGGTAGGAGACGGGCTGTAAGCAGGACGGGCTG
TAAGCAGGAGACGAGTAAGCAGGAGACGAGTAAGCAGGAGACGGATGGTACCAGGAGACGGATGG
TCTGGTGTGCTGCGTTGGGATCCTTAGGAGTCACCAGTGTCGTAA
Right flanking sequence: Indices 5474 -- 5973
TTAGTCCCCTGTGCCTGCTGCCTACGGATCTACTTCCCCACTTTCTCGGCCCATTCTCACCAGTG
TCTGTTTCAACAATGGTTTCGGATTGTATTACGCGATTAGTCACGAGAATCCCCGGTTATGAGGC
ATTTTCCAGAGGATGTGCAGTGGAAAGATACCCGAGGCCTCGGGAATGCCTATCAGGCCATCCCC
GCGGCGTCGACGGACTCGGTGGCGGTCGCACATGCGGTTTCGACGCAGAATGTCGACGGGTATGC
ACCACACGTTAGAGCGATTGGCGAAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGT
GCACGGCGTCGCCCGGTGCCTGGGAGGTGAAACACACAATGAACGGAGGAGAAAGAAACTTACGC
GGGGTAAGTGGTGTCCTCGGTGCATACGACGCGTGGACGTGGCCTGTTTTGTGGTGGTTAGTTGG
TTAGGTTAGTTGGTTAGGTGGTTGGTGGTTAGGTGGTTAGTGGGT
Found at i:5931 original size:8 final size:8
Alignment explanation
Indices: 5916--5986 Score: 73
Period size: 8 Copynumber: 9.6 Consensus size: 8
5906 CCTGTTTTGT
5916 GGTGGTTA
1 GGTGGTTA
*
5924 GTTGGTTA
1 GGTGGTTA
5932 ---GGTTA
1 GGTGGTTA
*
5937 GTTGGTTA
1 GGTGGTTA
5945 GGTGGTT-
1 GGTGGTTA
5952 GGTGGTTA
1 GGTGGTTA
5960 GGTGGTTA
1 GGTGGTTA
*
5968 -GTGGGTA
1 GGTGGTTA
5975 -GTGGTTA
1 GGTGGTTA
5982 GGTGG
1 GGTGG
5987 GTGGTTGGTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
5 5 0.09
7 19 0.35
8 30 0.56
ACGTcount: A:0.11, C:0.00, G:0.49, T:0.39
Consensus pattern (8 bp):
GGTGGTTA
Left flanking sequence: Indices 5416 -- 5915
TCGTAATGTTGGTGTTTTGGTGTTCGTGTCCTGGTGTTGCTGTCCTGGTGTCGGTGTCTTAGTCC
CCTGTGCCTGCTGCCTACGGATCTACTTCCCCACTTTCTCGGCCCATTCTCACCAGTGTCTGTTT
CAACAATGGTTTCGGATTGTATTACGCGATTAGTCACGAGAATCCCCGGTTATGAGGCATTTTCC
AGAGGATGTGCAGTGGAAAGATACCCGAGGCCTCGGGAATGCCTATCAGGCCATCCCCGCGGCGT
CGACGGACTCGGTGGCGGTCGCACATGCGGTTTCGACGCAGAATGTCGACGGGTATGCACCACAC
GTTAGAGCGATTGGCGAAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGTGCACGGC
GTCGCCCGGTGCCTGGGAGGTGAAACACACAATGAACGGAGGAGAAAGAAACTTACGCGGGGTAA
GTGGTGTCCTCGGTGCATACGACGCGTGGACGTGGCCTGTTTTGT
Right flanking sequence: Indices 5987 -- 6486
GTGGTTGGTTATCGTAGGGGTTCCCTGGTTTTCTCGGCATTCTTGGCTAAGCCTCAGGCAAGTGG
GTTGAGATTGTAACCAGAGCTACAGCGACTAAAGCGCGTACAAAATGCATGGAAGGTGGTGGTGG
TGTGGGACGGGGTGGAAATAGGTGGAGTTAGCAGGTGGTTCGCCGACACCGACACGTCGTAACTG
CTGCTCGTTTCGGTCGCGTACCTGTTCTACGTCGGATTTTACTGGATCGGGAAGGAGGCAGAGGT
TGTGAGTTGGTGGTTGTGAGTTGGAATGGTGGGGTGAGGCGATGGGGTGAGAAGCGATGGGGTGG
TGGAGTCGTGGGGTGGGTAAAGTGGGGCGGGATTCAAAATGGGGTGTTACGAAGCAGACCCCGGT
GGAGAAGTAGTAGAGTAAAGTGGTTTGAATGGGTATAGTGTACACGTGATTCTCCTCACATGAAT
ATACTCACATGAAATTCCTCACGTGGAGTATTCACGTGCTCCGAC
Found at i:5937 original size:13 final size:13
Alignment explanation
Indices: 5919--5968 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
5909 GTTTTGTGGT
5919 GGTTAGTTGGTTA
1 GGTTAGTTGGTTA
5932 GGTTAGTTGGTTA
1 GGTTAGTTGGTTA
*
5945 GG-TGGTTGG-T-
1 GGTTAGTTGGTTA
*
5955 GGTTAGGTGGTTA
1 GGTTAGTTGGTTA
5968 G
1 G
5969 TGGGTAGTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 2 0.06
11 6 0.19
12 7 0.23
13 16 0.52
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (13 bp):
GGTTAGTTGGTTA
Left flanking sequence: Indices 5419 -- 5918
TAATGTTGGTGTTTTGGTGTTCGTGTCCTGGTGTTGCTGTCCTGGTGTCGGTGTCTTAGTCCCCT
GTGCCTGCTGCCTACGGATCTACTTCCCCACTTTCTCGGCCCATTCTCACCAGTGTCTGTTTCAA
CAATGGTTTCGGATTGTATTACGCGATTAGTCACGAGAATCCCCGGTTATGAGGCATTTTCCAGA
GGATGTGCAGTGGAAAGATACCCGAGGCCTCGGGAATGCCTATCAGGCCATCCCCGCGGCGTCGA
CGGACTCGGTGGCGGTCGCACATGCGGTTTCGACGCAGAATGTCGACGGGTATGCACCACACGTT
AGAGCGATTGGCGAAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGTGCACGGCGTC
GCCCGGTGCCTGGGAGGTGAAACACACAATGAACGGAGGAGAAAGAAACTTACGCGGGGTAAGTG
GTGTCCTCGGTGCATACGACGCGTGGACGTGGCCTGTTTTGTGGT
Right flanking sequence: Indices 5969 -- 6468
TGGGTAGTGGTTAGGTGGGTGGTTGGTTATCGTAGGGGTTCCCTGGTTTTCTCGGCATTCTTGGC
TAAGCCTCAGGCAAGTGGGTTGAGATTGTAACCAGAGCTACAGCGACTAAAGCGCGTACAAAATG
CATGGAAGGTGGTGGTGGTGTGGGACGGGGTGGAAATAGGTGGAGTTAGCAGGTGGTTCGCCGAC
ACCGACACGTCGTAACTGCTGCTCGTTTCGGTCGCGTACCTGTTCTACGTCGGATTTTACTGGAT
CGGGAAGGAGGCAGAGGTTGTGAGTTGGTGGTTGTGAGTTGGAATGGTGGGGTGAGGCGATGGGG
TGAGAAGCGATGGGGTGGTGGAGTCGTGGGGTGGGTAAAGTGGGGCGGGATTCAAAATGGGGTGT
TACGAAGCAGACCCCGGTGGAGAAGTAGTAGAGTAAAGTGGTTTGAATGGGTATAGTGTACACGT
GATTCTCCTCACATGAATATACTCACATGAAATTCCTCACGTGGA
Found at i:5986 original size:22 final size:22
Alignment explanation
Indices: 5932--5982 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
5922 TAGTTGGTTA
* *
5932 GGTTAGTTGGTTAGGTGGTTGGT
1 GGTTAG-TGGTTAGGTGGGTAGT
5955 GGTTAGGTGGTTA-GTGGGTAGT
1 GGTTA-GTGGTTAGGTGGGTAGT
5977 GGTTAG
1 GGTTAG
5983 GTGGGTGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 12 0.48
23 11 0.44
24 1 0.04
ACGTcount: A:0.12, C:0.00, G:0.49, T:0.39
Consensus pattern (22 bp):
GGTTAGTGGTTAGGTGGGTAGT
Left flanking sequence: Indices 5432 -- 5931
TTGGTGTTCGTGTCCTGGTGTTGCTGTCCTGGTGTCGGTGTCTTAGTCCCCTGTGCCTGCTGCCT
ACGGATCTACTTCCCCACTTTCTCGGCCCATTCTCACCAGTGTCTGTTTCAACAATGGTTTCGGA
TTGTATTACGCGATTAGTCACGAGAATCCCCGGTTATGAGGCATTTTCCAGAGGATGTGCAGTGG
AAAGATACCCGAGGCCTCGGGAATGCCTATCAGGCCATCCCCGCGGCGTCGACGGACTCGGTGGC
GGTCGCACATGCGGTTTCGACGCAGAATGTCGACGGGTATGCACCACACGTTAGAGCGATTGGCG
AAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGTGCACGGCGTCGCCCGGTGCCTGG
GAGGTGAAACACACAATGAACGGAGGAGAAAGAAACTTACGCGGGGTAAGTGGTGTCCTCGGTGC
ATACGACGCGTGGACGTGGCCTGTTTTGTGGTGGTTAGTTGGTTA
Right flanking sequence: Indices 5983 -- 6482
GTGGGTGGTTGGTTATCGTAGGGGTTCCCTGGTTTTCTCGGCATTCTTGGCTAAGCCTCAGGCAA
GTGGGTTGAGATTGTAACCAGAGCTACAGCGACTAAAGCGCGTACAAAATGCATGGAAGGTGGTG
GTGGTGTGGGACGGGGTGGAAATAGGTGGAGTTAGCAGGTGGTTCGCCGACACCGACACGTCGTA
ACTGCTGCTCGTTTCGGTCGCGTACCTGTTCTACGTCGGATTTTACTGGATCGGGAAGGAGGCAG
AGGTTGTGAGTTGGTGGTTGTGAGTTGGAATGGTGGGGTGAGGCGATGGGGTGAGAAGCGATGGG
GTGGTGGAGTCGTGGGGTGGGTAAAGTGGGGCGGGATTCAAAATGGGGTGTTACGAAGCAGACCC
CGGTGGAGAAGTAGTAGAGTAAAGTGGTTTGAATGGGTATAGTGTACACGTGATTCTCCTCACAT
GAATATACTCACATGAAATTCCTCACGTGGAGTATTCACGTGCTC
Found at i:5987 original size:15 final size:16
Alignment explanation
Indices: 5932--5997 Score: 68
Period size: 15 Copynumber: 4.3 Consensus size: 16
5922 TAGTTGGTTA
* *
5932 GGTTAGTTGGTTAGGT
1 GGTTAGGTGGGTAGGT
*
5948 GGTT-GGTGGTTAGGT
1 GGTTAGGTGGGTAGGT
5963 GGTTA-GTGGGTA-GT
1 GGTTAGGTGGGTAGGT
5977 GGTTAGGTGGGT-GGTT
1 GGTTAGGTGGGTAGG-T
5993 GGTTA
1 GGTTA
5998 TCGTAGGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
14 7 0.16
15 27 0.61
16 10 0.23
ACGTcount: A:0.11, C:0.00, G:0.50, T:0.39
Consensus pattern (16 bp):
GGTTAGGTGGGTAGGT
Left flanking sequence: Indices 5432 -- 5931
TTGGTGTTCGTGTCCTGGTGTTGCTGTCCTGGTGTCGGTGTCTTAGTCCCCTGTGCCTGCTGCCT
ACGGATCTACTTCCCCACTTTCTCGGCCCATTCTCACCAGTGTCTGTTTCAACAATGGTTTCGGA
TTGTATTACGCGATTAGTCACGAGAATCCCCGGTTATGAGGCATTTTCCAGAGGATGTGCAGTGG
AAAGATACCCGAGGCCTCGGGAATGCCTATCAGGCCATCCCCGCGGCGTCGACGGACTCGGTGGC
GGTCGCACATGCGGTTTCGACGCAGAATGTCGACGGGTATGCACCACACGTTAGAGCGATTGGCG
AAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGTGCACGGCGTCGCCCGGTGCCTGG
GAGGTGAAACACACAATGAACGGAGGAGAAAGAAACTTACGCGGGGTAAGTGGTGTCCTCGGTGC
ATACGACGCGTGGACGTGGCCTGTTTTGTGGTGGTTAGTTGGTTA
Right flanking sequence: Indices 5998 -- 6497
TCGTAGGGGTTCCCTGGTTTTCTCGGCATTCTTGGCTAAGCCTCAGGCAAGTGGGTTGAGATTGT
AACCAGAGCTACAGCGACTAAAGCGCGTACAAAATGCATGGAAGGTGGTGGTGGTGTGGGACGGG
GTGGAAATAGGTGGAGTTAGCAGGTGGTTCGCCGACACCGACACGTCGTAACTGCTGCTCGTTTC
GGTCGCGTACCTGTTCTACGTCGGATTTTACTGGATCGGGAAGGAGGCAGAGGTTGTGAGTTGGT
GGTTGTGAGTTGGAATGGTGGGGTGAGGCGATGGGGTGAGAAGCGATGGGGTGGTGGAGTCGTGG
GGTGGGTAAAGTGGGGCGGGATTCAAAATGGGGTGTTACGAAGCAGACCCCGGTGGAGAAGTAGT
AGAGTAAAGTGGTTTGAATGGGTATAGTGTACACGTGATTCTCCTCACATGAATATACTCACATG
AAATTCCTCACGTGGAGTATTCACGTGCTCCGACGCTCGTGACGA
Found at i:6263 original size:14 final size:14
Alignment explanation
Indices: 6244--6270 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6234 AGGAGGCAGA
6244 GGTTGTGAGTTGGT
1 GGTTGTGAGTTGGT
6258 GGTTGTGAGTTGG
1 GGTTGTGAGTTGG
6271 AATGGTGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.52, T:0.41
Consensus pattern (14 bp):
GGTTGTGAGTTGGT
Left flanking sequence: Indices 5744 -- 6243
AGAGCGATTGGCGAAGCCGGTGGTCGCGACGTGCGTTTCGTCTGATAGCACTAGTGCACGGCGTC
GCCCGGTGCCTGGGAGGTGAAACACACAATGAACGGAGGAGAAAGAAACTTACGCGGGGTAAGTG
GTGTCCTCGGTGCATACGACGCGTGGACGTGGCCTGTTTTGTGGTGGTTAGTTGGTTAGGTTAGT
TGGTTAGGTGGTTGGTGGTTAGGTGGTTAGTGGGTAGTGGTTAGGTGGGTGGTTGGTTATCGTAG
GGGTTCCCTGGTTTTCTCGGCATTCTTGGCTAAGCCTCAGGCAAGTGGGTTGAGATTGTAACCAG
AGCTACAGCGACTAAAGCGCGTACAAAATGCATGGAAGGTGGTGGTGGTGTGGGACGGGGTGGAA
ATAGGTGGAGTTAGCAGGTGGTTCGCCGACACCGACACGTCGTAACTGCTGCTCGTTTCGGTCGC
GTACCTGTTCTACGTCGGATTTTACTGGATCGGGAAGGAGGCAGA
Right flanking sequence: Indices 6271 -- 6770
AATGGTGGGGTGAGGCGATGGGGTGAGAAGCGATGGGGTGGTGGAGTCGTGGGGTGGGTAAAGTG
GGGCGGGATTCAAAATGGGGTGTTACGAAGCAGACCCCGGTGGAGAAGTAGTAGAGTAAAGTGGT
TTGAATGGGTATAGTGTACACGTGATTCTCCTCACATGAATATACTCACATGAAATTCCTCACGT
GGAGTATTCACGTGCTCCGACGCTCGTGACGAGATCAATAAGGTAGGCAATGCCATCATAGACCA
CGAAACAAGTCAATGCCAAGTCAATGCCTCCAAAACCAGCACCAAAGCGTTCTTCAGTAAGGTAT
ACACTAGTTTAGCGCCAGTAACCCAAACTTTTCACGAGCTCACCCAGTGTTTCTCTCTCAATCAC
TCTCTCACTTCATAGTCGCAACCTTAACCACCACCCGAACTCCCCCATTCTCCCCAAAATCCCCC
AGATTTTCCATCACCTTCCTCGTCTTCCTCCCTTCCTCCTCCTCA
Found at i:6294 original size:13 final size:14
Alignment explanation
Indices: 6276--6310 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
6266 GTTGGAATGG
6276 TGGGGTGAG-GCGA
1 TGGGGTGAGAGCGA
6289 TGGGGTGAGAAGCGA
1 TGGGGTGAG-AGCGA
6304 TGGGGTG
1 TGGGGTG
6311 GTGGAGTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 9 0.45
15 11 0.55
ACGTcount: A:0.17, C:0.06, G:0.60, T:0.17
Consensus pattern (14 bp):
TGGGGTGAGAGCGA
Left flanking sequence: Indices 5776 -- 6275
GCGTTTCGTCTGATAGCACTAGTGCACGGCGTCGCCCGGTGCCTGGGAGGTGAAACACACAATGA
ACGGAGGAGAAAGAAACTTACGCGGGGTAAGTGGTGTCCTCGGTGCATACGACGCGTGGACGTGG
CCTGTTTTGTGGTGGTTAGTTGGTTAGGTTAGTTGGTTAGGTGGTTGGTGGTTAGGTGGTTAGTG
GGTAGTGGTTAGGTGGGTGGTTGGTTATCGTAGGGGTTCCCTGGTTTTCTCGGCATTCTTGGCTA
AGCCTCAGGCAAGTGGGTTGAGATTGTAACCAGAGCTACAGCGACTAAAGCGCGTACAAAATGCA
TGGAAGGTGGTGGTGGTGTGGGACGGGGTGGAAATAGGTGGAGTTAGCAGGTGGTTCGCCGACAC
CGACACGTCGTAACTGCTGCTCGTTTCGGTCGCGTACCTGTTCTACGTCGGATTTTACTGGATCG
GGAAGGAGGCAGAGGTTGTGAGTTGGTGGTTGTGAGTTGGAATGG
Right flanking sequence: Indices 6311 -- 6810
GTGGAGTCGTGGGGTGGGTAAAGTGGGGCGGGATTCAAAATGGGGTGTTACGAAGCAGACCCCGG
TGGAGAAGTAGTAGAGTAAAGTGGTTTGAATGGGTATAGTGTACACGTGATTCTCCTCACATGAA
TATACTCACATGAAATTCCTCACGTGGAGTATTCACGTGCTCCGACGCTCGTGACGAGATCAATA
AGGTAGGCAATGCCATCATAGACCACGAAACAAGTCAATGCCAAGTCAATGCCTCCAAAACCAGC
ACCAAAGCGTTCTTCAGTAAGGTATACACTAGTTTAGCGCCAGTAACCCAAACTTTTCACGAGCT
CACCCAGTGTTTCTCTCTCAATCACTCTCTCACTTCATAGTCGCAACCTTAACCACCACCCGAAC
TCCCCCATTCTCCCCAAAATCCCCCAGATTTTCCATCACCTTCCTCGTCTTCCTCCCTTCCTCCT
CCTCACTCCCCTACCAACCCTTCCCTCTACTCACTTTCCTCCCTC
Found at i:7820 original size:15 final size:15
Alignment explanation
Indices: 7786--7854 Score: 93
Period size: 15 Copynumber: 4.5 Consensus size: 15
7776 TTTTCAGTCT
**
7786 CGTGTGGTGAGAGGTC
1 CGTGTGGT-AGACTTC
* *
7802 CGTGTGGTGGAGTTC
1 CGTGTGGTAGACTTC
7817 CGTGTGGTAGACTTC
1 CGTGTGGTAGACTTC
7832 CGTGTGGTAGACTTC
1 CGTGTGGTAGACTTC
7847 CGTGTGGT
1 CGTGTGGT
7855 CAGAGTCTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
15 41 0.84
16 8 0.16
ACGTcount: A:0.10, C:0.16, G:0.42, T:0.32
Consensus pattern (15 bp):
CGTGTGGTAGACTTC
Left flanking sequence: Indices 7286 -- 7785
CGCCGGGAGCGACCCCACGGGGCTGCACCTCATGTCGGTGCAGGCGCACGGCAGCACCGACGTGG
GCAAGTACCAGCTGTTGGGGTCGGGGCTGTTGGCGGCGATGGCGGTGCTCGAGACCCACTACAAG
GACGGGATGACCAAGGACGAGGCGGTCAAGTTGTGTGCCGACGCCATTGAGGCCGGTATCTGGAA
CGACTTGGGGTCGGGGTCCAACGTGGACGTGTGCATCATGGAGACGGGCAAGGACGCCGAGTTGC
GGCGCAACTACCTCACCCCGAACCAGCGGGCGCAGAAGGAGCGCTCGTACAAGTTTGCCCGCGGC
ACCACCGCGGTGTTGCACACCAGTGTGCGCGAGTTGTGCGAGGTGGAGGAGGAGGTGGTGCAGTT
CAGCACCATGGAGGTGGATGCCACGGCGTAATGATAACGAATAGACAAGTTAAAGAGAATATTGT
AGGGTAGGGTGGGTGGGTAATGCGGGGAATGTAGGTTTTCAGTCT
Right flanking sequence: Indices 7855 -- 8354
CAGAGTCTTTATTAGACCATAGGGCTAATTCACTGGAAAAGGGTGGGCTGTGGCGTGTTAAGAGG
TGGAGTTTTATTGTGCTGTTTTAGCGTGTTGGTTCAGCGTTGTGTCCGTGTAGTTATAGTGTGTT
GTTTAACATTGTATTCGTGTAGTTTTAAAAGACGTTTCTGATAGGTGTAGGCCTGATACTAAGCC
AGATTACCAAAGTGTGTAGTAGTCGCGTGTCGTCTAGACTACCAGGAACGCCAACGGGCAGGTGA
CCAGAGCTCAAAGCAAGGGAGCTATGGTACAGGAACAGGGTAGCAGTTTCAGCTGTAGCTTTCTT
TGAACATATGGTGAAAGGAACACCTGTTGTAGACGCGACTAATGCTATTAACTATACTAGAGTCG
TAATGGTCTTACTAACGATATACCAAGTCAACGAAGATACTCCGAAAACATGTGATTCTTTGTTA
GACCGACAAAAGGATTTGATGCTCCCACCACTACCTTCCTTTCCA
Found at i:9281 original size:18 final size:19
Alignment explanation
Indices: 9250--9287 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
9240 GCTCCCTCTT
9250 CCCCGCCTCACTCCCCCGC
1 CCCCGCCTCACTCCCCCGC
9269 CCCCGCCTC-CTCCCCCGC
1 CCCCGCCTCACTCCCCCGC
9287 C
1 C
9288 TCTTCCCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.03, C:0.76, G:0.11, T:0.11
Consensus pattern (19 bp):
CCCCGCCTCACTCCCCCGC
Left flanking sequence: Indices 8750 -- 9249
CTTCACCGGGTTCTACCACCAGTTGGCCCCCCACAACGAGATCCGCCTCGCCGACCTCGAAACCC
TGGGCCTGTTCCAGTTTTTCAGCCCCCAGGGGTGCCCCCAGGGGCGGGTGATGTTTGACATGATG
ACCCAGGCCATCGACACCGAGCTGTTGTTTCTCCACGACTTCGAGCCCTTCCGCAAGACGTTTGT
GGTGCTTGGGATCGGCCACGCTGGCGGGATCGACCGCGACGCGGCGGTGGCCCAGTTGGCGAAGC
GCTACCCGAGTGTGCCTGTGCACCTGTTGGTGTTGTTTGGAGAGAGCACCTCCGAGTGCACCAAG
ACAAGCATTGAAGTCAGTCGCACCGAAGGCGCCAACAATGAAGGCATTCAGACGAAACAGAACGG
ATCTACTGGTAACACTGGATCCACTGGTACTGAATCCTCTGGTAACGCTGATGGCGCATCGGGAA
CCGACGGATCTGACAAGACAAACCCTCCCTCGCTGGCTCCCTCTT
Right flanking sequence: Indices 9288 -- 9787
TCTTCCCCCACCTCCTCCCACGTCTTCTACCACACCGGGGACAACGCCAGCGCCATCATGGCCGA
GCTCGCCACGGTTTTCCTCCACACCCTCGACTCCTACGCGCTGTCGTTCGCCAACATCACCCTCC
GGCTGCCGGTGCTGATCAAGGACAGCCACACCCTCGCCAAGGCCATCTCCCTCGCTCAAAAACGG
TCGCTGAGCCACAAACCCGCAGCGCCCGAGGCCAATCCGAAGCTGAAAGCGGCCATCCGCCACGC
GGGGCGCCACGCCAAGCTCATGGGAAACTTCCAGTTGCTCGCGGGCCGCTACCCGCAGGCGCTCG
CGCTGTTCACCGAGCTGTTGGCCCCTCTCAAAAAGTGCGACGACTACTTGTGGCTCGGGCTGGCG
ATCGAAGGCATTGCCATTGCCTGTGTGCTTATGCAATACGTCCACGTGTCCTATACGCTCCACAA
GTCCGTTGGGTCGGTGCTCCACATCGGGCACAAGCGGTTTCCCTC
Found at i:9295 original size:11 final size:12
Alignment explanation
Indices: 9268--9306 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
9258 CACTCCCCCG
9268 CCCCCGCCTCCT
1 CCCCCGCCTCCT
*
9280 CCCCCGCCTCTT
1 CCCCCGCCTCCT
*
9292 CCCCCACCTCCT
1 CCCCCGCCTCCT
9304 CCC
1 CCC
9307 ACGTCTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.03, C:0.74, G:0.05, T:0.18
Consensus pattern (12 bp):
CCCCCGCCTCCT
Left flanking sequence: Indices 8768 -- 9267
CCAGTTGGCCCCCCACAACGAGATCCGCCTCGCCGACCTCGAAACCCTGGGCCTGTTCCAGTTTT
TCAGCCCCCAGGGGTGCCCCCAGGGGCGGGTGATGTTTGACATGATGACCCAGGCCATCGACACC
GAGCTGTTGTTTCTCCACGACTTCGAGCCCTTCCGCAAGACGTTTGTGGTGCTTGGGATCGGCCA
CGCTGGCGGGATCGACCGCGACGCGGCGGTGGCCCAGTTGGCGAAGCGCTACCCGAGTGTGCCTG
TGCACCTGTTGGTGTTGTTTGGAGAGAGCACCTCCGAGTGCACCAAGACAAGCATTGAAGTCAGT
CGCACCGAAGGCGCCAACAATGAAGGCATTCAGACGAAACAGAACGGATCTACTGGTAACACTGG
ATCCACTGGTACTGAATCCTCTGGTAACGCTGATGGCGCATCGGGAACCGACGGATCTGACAAGA
CAAACCCTCCCTCGCTGGCTCCCTCTTCCCCGCCTCACTCCCCCG
Right flanking sequence: Indices 9307 -- 9806
ACGTCTTCTACCACACCGGGGACAACGCCAGCGCCATCATGGCCGAGCTCGCCACGGTTTTCCTC
CACACCCTCGACTCCTACGCGCTGTCGTTCGCCAACATCACCCTCCGGCTGCCGGTGCTGATCAA
GGACAGCCACACCCTCGCCAAGGCCATCTCCCTCGCTCAAAAACGGTCGCTGAGCCACAAACCCG
CAGCGCCCGAGGCCAATCCGAAGCTGAAAGCGGCCATCCGCCACGCGGGGCGCCACGCCAAGCTC
ATGGGAAACTTCCAGTTGCTCGCGGGCCGCTACCCGCAGGCGCTCGCGCTGTTCACCGAGCTGTT
GGCCCCTCTCAAAAAGTGCGACGACTACTTGTGGCTCGGGCTGGCGATCGAAGGCATTGCCATTG
CCTGTGTGCTTATGCAATACGTCCACGTGTCCTATACGCTCCACAAGTCCGTTGGGTCGGTGCTC
CACATCGGGCACAAGCGGTTTCCCTCCCTCGGAGGATCCTCCTCG
Found at i:12672 original size:11 final size:11
Alignment explanation
Indices: 12656--12708 Score: 106
Period size: 11 Copynumber: 4.8 Consensus size: 11
12646 TAGACTGAAA
12656 GAGTACAAGAG
1 GAGTACAAGAG
12667 GAGTACAAGAG
1 GAGTACAAGAG
12678 GAGTACAAGAG
1 GAGTACAAGAG
12689 GAGTACAAGAG
1 GAGTACAAGAG
12700 GAGTACAAG
1 GAGTACAAG
12709 GTAAAGAGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 42 1.00
ACGTcount: A:0.45, C:0.09, G:0.36, T:0.09
Consensus pattern (11 bp):
GAGTACAAGAG
Left flanking sequence: Indices 12156 -- 12655
CACTTGAGCGGTGAGTGGCGCATGCCCGGCACATCCCGGGCGGGCACCATCGACGTCCGGGCGGT
CCGGCTCACCCAGCGGATGGCAGACGCCCTTGTGCTCCAGTACGTCAAGGTCAGTACTGCGATCA
CCGACGAGCACGGGGAGCAGGTGGTACCCGACGGCGACTACTACCGGTTGGCAGTCAACACCAAC
TACACCCTCTGCACCTCCGTGTCCAACACGGGCACGGCGGCCATCCACGGCATCCTCAGGCATTT
ACCGCACGACAAGTCGATCGACCGGCGAATTTTGGTTAATGGGGTGCTCCAGCGGCCGCTCCCGC
AGACGAAGCCTGGGGAAAGCACCACGGTGCAATTGGACTTTGTGGTGTTGGAGCGCGGGGAGTAC
CCGTGGGTGCTGGTGGTGGACAACCAGGAGACCCACGTGAAGAACTCGTTTGTCATCACGGCCGC
GTAGGCCAGGCATAGCATAGTCATTAGCATATTTATAGACTGAAA
Right flanking sequence: Indices 12709 -- 13208
GTAAAGAGGTAGCGGATGGTGGGTGATGGTGTTTTAGAATGGTTCAAGGCTGCGGGATTCGTATT
CTGTTGTTGAATGGGAGAATTTTGGGGGTATAATTGTAGATTTTGTACGAAATATGACTTTCGTG
TGGCAAGAATCTAGAGTGAATACTCCAACAAGAATACAGATGGTTCGAGCTTTAGGGTTGGTGAC
GTGGTGCTGAAGAATGCGAGACGAGTCTTGCTAAACCTCAACTTCAAGCTCTTGAATAGGGTTCG
GTGGGATGACGCATGGAACAATCTTGCTGAGTGGGATGACACACTTGGAAAATGTGATACACTGC
CAGTTTCCTGGGAGATACACCTAGAGATCGTGGGATGATACATGGGATGATACACTCCATTTACG
AGGTGCCTGAACACATGCGTGGCACTGTGAATACACGCGCTCCACCCGGGTGGGATGATCCTCCA
CCAGTGCGGGGTTCTCCATATCCGTTTATTCACTTATATACAAGG
Found at i:13756 original size:15 final size:15
Alignment explanation
Indices: 13736--13795 Score: 86
Period size: 15 Copynumber: 4.0 Consensus size: 15
13726 AGCCCCCTAA
13736 GGGCTGTTTAGGTTT
1 GGGCTGTTTAGGTTT
13751 GGGCTGTTTAGGTTT
1 GGGCTGTTTAGGTTT
*
13766 -GGCTGTTTAAGTTT
1 GGGCTGTTTAGGTTT
*
13780 GGGGTTGTTTAGGTTT
1 -GGGCTGTTTAGGTTT
13796 TTGGCTACAG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
14 13 0.32
15 15 0.38
16 12 0.30
ACGTcount: A:0.08, C:0.05, G:0.38, T:0.48
Consensus pattern (15 bp):
GGGCTGTTTAGGTTT
Left flanking sequence: Indices 13236 -- 13735
GCGAACGCCGTTACCTAGTAGACCGCCAATCCCGAGATCAGCGTTTGCTGTTGTCAAGCTTGAAC
GGCAACGGCTGCGCCCCCTCGGCCTCCAACTTCTCAATGTACCGTGCCCGCTGCAAGTCGGCAAA
CCGCTTCTCCTGGAAGTACTTGACCCACAGCTCCACGCACTTGCCCTCGAAGTTGGCCCGCTGGG
CCCCACACTGCGATTTGACCTTGTCCTCGGACTTGGGGCTCAACGAGTCGTCGATGTTGTTGGCA
GTAAGACAAGCAAAGAACTCGTCACGCGAATCCCAGCACTCTTTCCGCTTACCCCGCTTGGGCGG
GGCAGTCACGGTCTCTGATGACGACGAGAAGAAACCCATGGTGGTAGTGGATTTTCAAAAGCCGC
ACCGAAATTGCACCTATGCACGACGGTGGCTGCAAACACCGCATGAGGAAATCAGGGATTAAACC
CGAGATATAAACTTTTAAACTCGTGGTTGCTATGTAGCCCCCTAA
Right flanking sequence: Indices 13796 -- 14295
TTGGCTACAGCATGCAAAGTACTCTGTTGATTAAAAGGCTTCAAACCGAAATGACGAAACTAAAA
CATCTACAAGGCAGCAAGGCCAACTAAAGCAATCAAGGGAGAGACAAGGCCACGCTTAGCGTAGT
TGTCCTGGGTCACCACGGGCGGCTGCTGGGGCTCGACCGTGCGGATCTCAGTCACAGTAGCGACG
GGCGGGCAGGTGTTGGCAATGGTCACGGTATCCGCCGGCGGACACTCGGGGCACTCGGGGCCACC
CACAGTCACGGTCTTGGTCTCAGCAGGCGGGTTCGGGGGGCAGTCAAGCGTGGTGGTCTCAGTCT
CGGTCACAGTCACCTTGCCCTCGGTAACAGTCACGGTGTCCTTGGCCTCAGTAACAGTAACCTTC
TCCGTCTTGTAGATCACCTGGGGCGGGGGAACGACCGTCACCGTAGCGTGGGGCGGGCACTCACC
CTCAACAGTGGTCACAGGAGGCGGCGGGTGGACAGTAGTGGGCTC
Found at i:14534 original size:12 final size:12
Alignment explanation
Indices: 14519--14640 Score: 104
Period size: 12 Copynumber: 10.2 Consensus size: 12
14509 GCTGGTGACG
*
14519 TCGCCGGTGGGC
1 TCGCCAGTGGGC
* *
14531 TCGCCCGTGGGG
1 TCGCCAGTGGGC
*
14543 TCGCCGGTGGGC
1 TCGCCAGTGGGC
*
14555 TCGCCAGTAGGC
1 TCGCCAGTGGGC
** *
14567 TCATCAGTGGGG
1 TCGCCAGTGGGC
*
14579 TCACCAGTGGGC
1 TCGCCAGTGGGC
*
14591 TC-CTCGGTGGGC
1 TCGC-CAGTGGGC
*
14603 TCACCAGTGGGC
1 TCGCCAGTGGGC
*
14615 TC-CTCAGTAGGC
1 TCGC-CAGTGGGC
14627 TCGCCAGTGGGC
1 TCGCCAGTGGGC
14639 TC
1 TC
14641 CTCGGTAGGC
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
11 2 0.02
12 86 0.96
13 2 0.02
ACGTcount: A:0.09, C:0.32, G:0.39, T:0.20
Consensus pattern (12 bp):
TCGCCAGTGGGC
Left flanking sequence: Indices 14019 -- 14518
TATCCGCCGGCGGACACTCGGGGCACTCGGGGCCACCCACAGTCACGGTCTTGGTCTCAGCAGGC
GGGTTCGGGGGGCAGTCAAGCGTGGTGGTCTCAGTCTCGGTCACAGTCACCTTGCCCTCGGTAAC
AGTCACGGTGTCCTTGGCCTCAGTAACAGTAACCTTCTCCGTCTTGTAGATCACCTGGGGCGGGG
GAACGACCGTCACCGTAGCGTGGGGCGGGCACTCACCCTCAACAGTGGTCACAGGAGGCGGCGGG
TGGACAGTAGTGGGCTCAGGGGGTGGCGGCTGCTCGTCGGTGGGAGGAGGAATACAGCTGGTGAT
GGTGACGGTACCAGGCGGGCACACCGTGGTGTGGGGCTGGCAGTGGTTGTCGTCACAGGTGGTGA
CGGTGATGGTGGTGGTGGAGGGGCACCAGATAATCCAGTCGGTCACCGTCCAGGTCTGGGCGGGA
GGGGGGAGGGTGGTGTAACTGATCAAGTCACCAGTGCTGGTGACG
Right flanking sequence: Indices 14641 -- 15140
CTCGGTAGGCTCCTCGGTAGGCTCACCAGTAGGCTCCTCAGTAGGCTCCTCGGTAGGCTCCTCAG
TGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGC
TCCTCAGTAGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGG
CTCGGGCTGGGGCTCCTCAGTAGGTTGAGGGTCCTCAGTCTCAGCAGGCGCGACGTCCGTAGGAG
CAGCTTCTCCAGAAGTTTCAGCAACGGCAGCAGAGGCGTAGAATAAAGCGAGTGCGTAAACAAAC
TTGGTCATTTTGTTGATGATAATCTCCTTCCAACACCGGTATTTATACCCTTTGGCTCCTCGCGT
TTTGCAACCGCGTTGTGGGCCCTGGGTGGCTTGCGTTTAGTTGCATTTAAACTATTAATAGCATG
ACGTCTTTCTTTTGGTGAGCAAGGTCATGACTCGGGCACCGTAAC
Found at i:14652 original size:36 final size:35
Alignment explanation
Indices: 14588--14712 Score: 153
Period size: 36 Copynumber: 3.5 Consensus size: 35
14578 GTCACCAGTG
* * *
14588 GGCTCCTCGGTGGGCTCAC-CAGTGGGCTCCTCAGTA
1 GGCTCC-CAGTGGGCTC-CTCAGTAGGCTCCTCGGTA
*
14624 GGCTCGCCAGTGGGCTCCTCGGTAGGCTCCTCGGTA
1 GGCTC-CCAGTGGGCTCCTCAGTAGGCTCCTCGGTA
*
14660 GGCTCACCAGTAGGCTCCTCAGTAGGCTCCTCGGTA
1 GGCTC-CCAGTGGGCTCCTCAGTAGGCTCCTCGGTA
14696 GGCTCCTCAGTGGGCTC
1 GGCTCC-CAGTGGGCTC
14713 GGGCTCCTCA
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
35 2 0.03
36 75 0.96
37 1 0.01
ACGTcount: A:0.11, C:0.34, G:0.33, T:0.22
Consensus pattern (35 bp):
GGCTCCCAGTGGGCTCCTCAGTAGGCTCCTCGGTA
Left flanking sequence: Indices 14088 -- 14587
TCGGGGGGCAGTCAAGCGTGGTGGTCTCAGTCTCGGTCACAGTCACCTTGCCCTCGGTAACAGTC
ACGGTGTCCTTGGCCTCAGTAACAGTAACCTTCTCCGTCTTGTAGATCACCTGGGGCGGGGGAAC
GACCGTCACCGTAGCGTGGGGCGGGCACTCACCCTCAACAGTGGTCACAGGAGGCGGCGGGTGGA
CAGTAGTGGGCTCAGGGGGTGGCGGCTGCTCGTCGGTGGGAGGAGGAATACAGCTGGTGATGGTG
ACGGTACCAGGCGGGCACACCGTGGTGTGGGGCTGGCAGTGGTTGTCGTCACAGGTGGTGACGGT
GATGGTGGTGGTGGAGGGGCACCAGATAATCCAGTCGGTCACCGTCCAGGTCTGGGCGGGAGGGG
GGAGGGTGGTGTAACTGATCAAGTCACCAGTGCTGGTGACGTCGCCGGTGGGCTCGCCCGTGGGG
TCGCCGGTGGGCTCGCCAGTAGGCTCATCAGTGGGGTCACCAGTG
Right flanking sequence: Indices 14713 -- 15212
GGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAG
TAGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGC
TGGGGCTCCTCAGTAGGTTGAGGGTCCTCAGTCTCAGCAGGCGCGACGTCCGTAGGAGCAGCTTC
TCCAGAAGTTTCAGCAACGGCAGCAGAGGCGTAGAATAAAGCGAGTGCGTAAACAAACTTGGTCA
TTTTGTTGATGATAATCTCCTTCCAACACCGGTATTTATACCCTTTGGCTCCTCGCGTTTTGCAA
CCGCGTTGTGGGCCCTGGGTGGCTTGCGTTTAGTTGCATTTAAACTATTAATAGCATGACGTCTT
TCTTTTGGTGAGCAAGGTCATGACTCGGGCACCGTAACTAAGTTATGTTGCGACTGCGTTGAAAA
TATAATCTCGTATTCCATGATTGTTCATTATGCCCCTATTATCGC
Found at i:14719 original size:18 final size:18
Alignment explanation
Indices: 14696--14843 Score: 287
Period size: 18 Copynumber: 8.2 Consensus size: 18
14686 CTCCTCGGTA
14696 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
14714 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
14732 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
14750 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
*
14768 GGCTCCTCAGTAGGCTCG
1 GGCTCCTCAGTGGGCTCG
14786 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
14804 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
14822 GGCTCCTCAGTGGGCTCG
1 GGCTCCTCAGTGGGCTCG
14840 GGCT
1 GGCT
14844 GGGGCTCCTC
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 128 1.00
ACGTcount: A:0.06, C:0.33, G:0.39, T:0.22
Consensus pattern (18 bp):
GGCTCCTCAGTGGGCTCG
Left flanking sequence: Indices 14196 -- 14695
AGATCACCTGGGGCGGGGGAACGACCGTCACCGTAGCGTGGGGCGGGCACTCACCCTCAACAGTG
GTCACAGGAGGCGGCGGGTGGACAGTAGTGGGCTCAGGGGGTGGCGGCTGCTCGTCGGTGGGAGG
AGGAATACAGCTGGTGATGGTGACGGTACCAGGCGGGCACACCGTGGTGTGGGGCTGGCAGTGGT
TGTCGTCACAGGTGGTGACGGTGATGGTGGTGGTGGAGGGGCACCAGATAATCCAGTCGGTCACC
GTCCAGGTCTGGGCGGGAGGGGGGAGGGTGGTGTAACTGATCAAGTCACCAGTGCTGGTGACGTC
GCCGGTGGGCTCGCCCGTGGGGTCGCCGGTGGGCTCGCCAGTAGGCTCATCAGTGGGGTCACCAG
TGGGCTCCTCGGTGGGCTCACCAGTGGGCTCCTCAGTAGGCTCGCCAGTGGGCTCCTCGGTAGGC
TCCTCGGTAGGCTCACCAGTAGGCTCCTCAGTAGGCTCCTCGGTA
Right flanking sequence: Indices 14844 -- 15343
GGGGCTCCTCAGTAGGTTGAGGGTCCTCAGTCTCAGCAGGCGCGACGTCCGTAGGAGCAGCTTCT
CCAGAAGTTTCAGCAACGGCAGCAGAGGCGTAGAATAAAGCGAGTGCGTAAACAAACTTGGTCAT
TTTGTTGATGATAATCTCCTTCCAACACCGGTATTTATACCCTTTGGCTCCTCGCGTTTTGCAAC
CGCGTTGTGGGCCCTGGGTGGCTTGCGTTTAGTTGCATTTAAACTATTAATAGCATGACGTCTTT
CTTTTGGTGAGCAAGGTCATGACTCGGGCACCGTAACTAAGTTATGTTGCGACTGCGTTGAAAAT
ATAATCTCGTATTCCATGATTGTTCATTATGCCCCTATTATCGCGGGTGCATGTCATTAGTTAGA
CACTAATTATAGTGGAAGGCCATTGACAAACCTTCCGCATACCAAAGCCTCGTTGTCGTCCGCTT
TGGGCAAGCCGTTCTTCGCTCGGCGAAAATATCCGCCAAGATCCC
Found at i:14730 original size:12 final size:12
Alignment explanation
Indices: 14559--14712 Score: 136
Period size: 12 Copynumber: 12.8 Consensus size: 12
14549 GTGGGCTCGC
*
14559 CAGTAGGCTCAT
1 CAGTAGGCTCCT
* *
14571 CAGTGGGGTCAC-
1 CAGTAGGCTC-CT
*
14583 CAGTGGGCTCCT
1 CAGTAGGCTCCT
* *
14595 CGGTGGGCTCAC-
1 CAGTAGGCTC-CT
*
14607 CAGTGGGCTCCT
1 CAGTAGGCTCCT
14619 CAGTAGGCTCGC-
1 CAGTAGGCTC-CT
*
14631 CAGTGGGCTCCT
1 CAGTAGGCTCCT
*
14643 CGGTAGGCTCCT
1 CAGTAGGCTCCT
*
14655 CGGTAGGCTCAC-
1 CAGTAGGCTC-CT
14667 CAGTAGGCTCCT
1 CAGTAGGCTCCT
14679 CAGTAGGCTCCT
1 CAGTAGGCTCCT
*
14691 CGGTAGGCTCCT
1 CAGTAGGCTCCT
*
14703 CAGTGGGCTC
1 CAGTAGGCTC
14713 GGGCTCCTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
11 4 0.03
12 113 0.94
13 3 0.03
ACGTcount: A:0.13, C:0.32, G:0.33, T:0.22
Consensus pattern (12 bp):
CAGTAGGCTCCT
Left flanking sequence: Indices 14059 -- 14558
AGTCACGGTCTTGGTCTCAGCAGGCGGGTTCGGGGGGCAGTCAAGCGTGGTGGTCTCAGTCTCGG
TCACAGTCACCTTGCCCTCGGTAACAGTCACGGTGTCCTTGGCCTCAGTAACAGTAACCTTCTCC
GTCTTGTAGATCACCTGGGGCGGGGGAACGACCGTCACCGTAGCGTGGGGCGGGCACTCACCCTC
AACAGTGGTCACAGGAGGCGGCGGGTGGACAGTAGTGGGCTCAGGGGGTGGCGGCTGCTCGTCGG
TGGGAGGAGGAATACAGCTGGTGATGGTGACGGTACCAGGCGGGCACACCGTGGTGTGGGGCTGG
CAGTGGTTGTCGTCACAGGTGGTGACGGTGATGGTGGTGGTGGAGGGGCACCAGATAATCCAGTC
GGTCACCGTCCAGGTCTGGGCGGGAGGGGGGAGGGTGGTGTAACTGATCAAGTCACCAGTGCTGG
TGACGTCGCCGGTGGGCTCGCCCGTGGGGTCGCCGGTGGGCTCGC
Right flanking sequence: Indices 14713 -- 15212
GGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAG
TAGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGCTCCTCAGTGGGCTCGGGC
TGGGGCTCCTCAGTAGGTTGAGGGTCCTCAGTCTCAGCAGGCGCGACGTCCGTAGGAGCAGCTTC
TCCAGAAGTTTCAGCAACGGCAGCAGAGGCGTAGAATAAAGCGAGTGCGTAAACAAACTTGGTCA
TTTTGTTGATGATAATCTCCTTCCAACACCGGTATTTATACCCTTTGGCTCCTCGCGTTTTGCAA
CCGCGTTGTGGGCCCTGGGTGGCTTGCGTTTAGTTGCATTTAAACTATTAATAGCATGACGTCTT
TCTTTTGGTGAGCAAGGTCATGACTCGGGCACCGTAACTAAGTTATGTTGCGACTGCGTTGAAAA
TATAATCTCGTATTCCATGATTGTTCATTATGCCCCTATTATCGC
Found at i:17699 original size:13 final size:15
Alignment explanation
Indices: 17646--17698 Score: 92
Period size: 15 Copynumber: 3.7 Consensus size: 15
17636 CGATGGAGGC
17646 GTCTTGTGATGCGTG
1 GTCTTGTGATGCGTG
17661 GTCTTGTGATGCGTG
1 GTCTTGTGATGCGTG
17676 GTCTTGTGAT-CG-G
1 GTCTTGTGATGCGTG
17689 GTCTTGTGAT
1 GTCTTGTGAT
17699 CCGGTGATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.29
14 2 0.05
15 25 0.66
ACGTcount: A:0.08, C:0.13, G:0.38, T:0.42
Consensus pattern (15 bp):
GTCTTGTGATGCGTG
Left flanking sequence: Indices 17146 -- 17645
GTGACTCGCAGATTCCCGTGGTGTACCTGAAGCGGCTGATGGACGGGATGGTGCCCACCGCCGCC
GTGCCTACGATTGTCTCGGACGACATTGGCAACCACCCGTACCTCAATGGCATTGCAGGCGGGTA
CCTCAACCCGCAGAAAGCCCGCATCTTGCTCCAGCTCTGCTTGAACAACAACTTGGCGCTTCCCC
AGATCCGTGAGATTTTCAAGAAAATGTAATAGACTAATAGAGTATTTCACCGGTGCATAATTTCA
TCTAATTGAGATCCACACAACAAAGACCAGCCATTGATCGCCACGATCGGGGCACAAGATCGACG
CACAGGGGAATGGCCTGTTCCCCACAATTTTCAGTTTCACACCGTTTCATCTCGCGGACAGAGTC
CGGACAAAGTGTCCGACGTCGCTTTTCATATGGTGCCAAGCATTGCTCAATTTCATATGTCTAAC
TCCGAGACGTATCACACGCCAACCGTCGGATGAGCCGATGGAGGC
Right flanking sequence: Indices 17699 -- 18198
CCGGTGATCAGTCGTCAACCATGCCTCGTAATCGGTGTTGGGCCGTCACGTACACAGGATGTTGG
GACCGATCAGCGGTCACGAATGTCGCAGACCCGACATGCAATGTCAGATACTCCAGATACACCAG
ATACACTAGTCCATTATTCCTTTTATTACTCATAACAATCACGTAGCTAAAAAATTTACGAATTC
TTGTAGGCCTTCTCAACCTTGTCCTTGCACGAGTCCAAAATCTTTCTTCTCTGCAACTTCTGGGC
CGAAGTAACCATGCCGTTCTGGGGAGTCCACTCCTCGTCGAGCAACACAATGTTTTGCAACAACT
CAATCCCCTTGAGCCCCTGCGACTTACCCGTCTGCAAGAGCAGTTTGTGCACGGCAGAGACAACC
TTGGGGTCCTCGCAGAGCACCGCCAATTCCTTCTCCTGCACCTCTTGCTTCAGGTAGACGCCCTC
GTCCGCAAGGAACAGCTTCATGTGCGCCTCGTTGGGGAGCACAAT
Found at i:23714 original size:13 final size:13
Alignment explanation
Indices: 23696--23737 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
23686 AAGAGACGGG
23696 GATGAGGCTGGGA
1 GATGAGGCTGGGA
23709 GATGAGGCT--G-
1 GATGAGGCTGGGA
23719 GATGAGGCTGGGA
1 GATGAGGCTGGGA
23732 GATGAG
1 GATGAG
23738 TCTGTGTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 9 0.35
11 1 0.04
12 1 0.04
13 15 0.58
ACGTcount: A:0.24, C:0.07, G:0.52, T:0.17
Consensus pattern (13 bp):
GATGAGGCTGGGA
Left flanking sequence: Indices 23196 -- 23695
AACCACGCCATTTGGCAATCGGACCCGGTGTTTCAGACGTGACCGTAAACAAGTGCATCGAACCC
AGTTTGTGTGTAAGTTTAAACAATTAGAAACCGTTGTCGTAATTACGATCGGCGATTGGTGTTTC
GGGTCGACCTGGGGAGCAACTGGTGGGCAGGGGTGAAACTCGAGGCGACGGTTGGGTCATGTGTC
TGCCTGGTGACTGACCTGACGGGAACGCTGGCGAGGATGGGCCGATATTAGCCGGCGCACGTGGA
ACTAAAGACATCGGCGCCGGTTAGATTTATAGCATGTAAACACCACCAATGTCGCGATGGCTGTG
GTGCTAATGGGGGTTAATGTAAGCGAAGCCTCGATCGTGGTCCCAGGGACCCGCGACCTCCGGGT
GGGTGCGATCTAGACCCGAAAAGAAATGGCCCAATGAGGAGGTGTCCAGACCTGACAGGTGAAAC
GGTTGGTGATGAGGCCAAGAGAAGAAGTTTAGGCCAAGAGACGGG
Right flanking sequence: Indices 23738 -- 24237
TCTGTGTGAGTTGGCGAGGCTACGGTCTAGTTGGTTATTTTGGAGTTGTTGGTAGGTACTCATGG
GTATTCGTGAGGCGTTATGGATTATCACGTTCGGGCCAGGTATGAGGCTACCCGTTCACGAGAAT
CAGACTATCCGTTCACGCTAGGGCGGGTGGATCGTCCTCGCGTGGCGAGTTTGTAAATACAGGGT
AGACTCGGATGACAGCGGACGCCCACGGGTGAAGTGACACGTAGATCAACCGAATGGCACAACTC
CTAACCAGGTGAAAGCCGTGCCTGCCCGCCTGGCTGAACCCCATGCAAACAAATTCAAACAACCG
TTTGCAGCCGTTGTAATTACTCGGTGATTGCGCCCCGGTTCGGTAGTGGAGAACGCAAATTCTAC
TCCCAAACACCGGCTGGCTTAGCTGAAACTGTCGACGCAAACCGTCAACGCAAACCGTCAACGCA
CCGCCTACGCACCGCCAACGCGTTCCCTACGGATCCGTTTCACCT
Found at i:24178 original size:13 final size:13
Alignment explanation
Indices: 24162--24192 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
24152 GAAACTGTCG
24162 ACGCAAACCGTCA
1 ACGCAAACCGTCA
24175 ACGCAAACCGTCA
1 ACGCAAACCGTCA
24188 ACGCA
1 ACGCA
24193 CCGCCTACGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.39, G:0.16, T:0.06
Consensus pattern (13 bp):
ACGCAAACCGTCA
Left flanking sequence: Indices 23662 -- 24161
AGGCCAAGAGAAGAAGTTTAGGCCAAGAGACGGGGATGAGGCTGGGAGATGAGGCTGGATGAGGC
TGGGAGATGAGTCTGTGTGAGTTGGCGAGGCTACGGTCTAGTTGGTTATTTTGGAGTTGTTGGTA
GGTACTCATGGGTATTCGTGAGGCGTTATGGATTATCACGTTCGGGCCAGGTATGAGGCTACCCG
TTCACGAGAATCAGACTATCCGTTCACGCTAGGGCGGGTGGATCGTCCTCGCGTGGCGAGTTTGT
AAATACAGGGTAGACTCGGATGACAGCGGACGCCCACGGGTGAAGTGACACGTAGATCAACCGAA
TGGCACAACTCCTAACCAGGTGAAAGCCGTGCCTGCCCGCCTGGCTGAACCCCATGCAAACAAAT
TCAAACAACCGTTTGCAGCCGTTGTAATTACTCGGTGATTGCGCCCCGGTTCGGTAGTGGAGAAC
GCAAATTCTACTCCCAAACACCGGCTGGCTTAGCTGAAACTGTCG
Right flanking sequence: Indices 24193 -- 24692
CCGCCTACGCACCGCCAACGCGTTCCCTACGGATCCGTTTCACCTGGATCACCGTTTCCCATTGT
CCCCCATTCCGTTCCAGGCTCATTCCGAGTGCAATGCAGGAGCCCCCAAGGACGATTTCATCGCT
GACATGACGCAAATAAGATGTAGGTGAGAGAACAAAGTGTTTATTGTGGATCGAGCCCAGCCTAT
GCAAGGGGCTGTCACCCTTCCGACATTCTTGGTAAGCAGCAACTGGACGCGAACCGCCGCGGGCC
CCCCGAGGACGCGTAAGCGAAGCGGGCGAACAACACCGTGTCTCGAACACCGCCGCCACCAACCA
CGCCACCCTGCCTAAGCGACCGGGCCCGTCGCCACCACCCGCTGCTCGTCTAGTTTCATCCAACG
GCTCGCACCCCGATCGGGCCAAAACATCAACAATGCTCATTTCCCCAATCGAACAAATCAAAAAT
ACCCCCAGCAAATAAAACCCGTGACGGCCGCAAAACCACCGCAAT
Found at i:30698 original size:14 final size:14
Alignment explanation
Indices: 30657--30716 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
30647 CGTGAAGTAA
30657 CGTGAATTGAGTCT
1 CGTGAATTGAGTCT
** **
30671 CGTGCGTTTCGTCT
1 CGTGAATTGAGTCT
30685 CGTGAATTGAGTCT
1 CGTGAATTGAGTCT
*
30699 CGTG-AGTGATGTCT
1 CGTGAATTGA-GTCT
30713 CGTG
1 CGTG
30717 CGAGAGATCT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
13 4 0.11
14 32 0.89
ACGTcount: A:0.13, C:0.18, G:0.32, T:0.37
Consensus pattern (14 bp):
CGTGAATTGAGTCT
Left flanking sequence: Indices 30157 -- 30656
GACCTTGCGCAGTTCTACCAGAAGCGGTTGTCGGTGTTGACCCTGGGCGCCAACACCAACGTGTA
CTTGTGGATTCTGACCAAGGAGGCGGGCCACAAGGAGTTTACCATTAGCCAGTTGAACTTGATCG
AGAACAAACTCAAGTTTTTGATTCGTCGCGACGATCCGTTCATCAAGAAGGTGTTTATCCGGTTT
TGCGACGAGCTGATTGTGGACTATGATTCCGACAGCAACACCACCCAGGGATTTGAGGAGTTGGT
GGAAAAGGATAAAAAGGAGTAGATACACTAGTGGTTACGGTAGTGGTTATGATAATAGAGGTGAC
AAAGACAACGAGGTGAAACGATGGTTAGTACGTGTAGAGAGTGGGGAAAGAACGTGAAGCAACGT
GAAGTAGCGTGAATGGAGTCATGTGAGATGTAAAGCTGGGAGTTGTAGGTACCGGGCCAAACAAC
GTGAATGAAATGAGGAAGAAACGTGAAGAGAGTAACGTGAAGTAA
Right flanking sequence: Indices 30717 -- 31216
CGAGAGATCTCGTGAATGTAACGTGAATTCACTCGTGAATCTGGTCTCGTGAATCTGGTCTCGTG
AACACTTGTCCCGTGAGCAACGTATTAGACCTTCCTAGATATCCTCTAATTAGTGTACTGGAAAG
ATCCGAGATACATCTCCTCGTATCGACCTCTCAACCCCCACCATGTACTTCTCTCTAAACTCCCT
TCTCTAGCGTCACCCCAGTTTCTCGCCACCCCAGTTTCTCGCCCCCCCAGTTTCGCCACCGTTTC
TCGCTACCGTTAACCTAGGCTATCAGGTCCGTTCGTGCGAACTTGTGGGGTGGCAGAGGGGCAGT
TCCACGGGTATGGCGGCGCACCCGGGCAGGCCAGGTTGCTACTCCAAGTGTTACGAGCTTTTACG
GCCCCGTCTCGGTCGTGATAGCCGCCTCGCCGCGACCCCGGGCCTACTGCAACCTACTTGCATTA
TCTACGTACCCCTGGACCCTCCACCCCGTGGCCCATTTTCTAGTG
Found at i:30712 original size:28 final size:28
Alignment explanation
Indices: 30657--30716 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
30647 CGTGAAGTAA
* *
30657 CGTGAATTGAGTCTCGTGCGTTTCGTCT
1 CGTGAATTGAGTCTCGTGAGTATCGTCT
30685 CGTGAATTGAGTCTCGTGAGTGAT-GTCT
1 CGTGAATTGAGTCTCGTGAGT-ATCGTCT
30713 CGTG
1 CGTG
30717 CGAGAGATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.13, C:0.18, G:0.32, T:0.37
Consensus pattern (28 bp):
CGTGAATTGAGTCTCGTGAGTATCGTCT
Left flanking sequence: Indices 30157 -- 30656
GACCTTGCGCAGTTCTACCAGAAGCGGTTGTCGGTGTTGACCCTGGGCGCCAACACCAACGTGTA
CTTGTGGATTCTGACCAAGGAGGCGGGCCACAAGGAGTTTACCATTAGCCAGTTGAACTTGATCG
AGAACAAACTCAAGTTTTTGATTCGTCGCGACGATCCGTTCATCAAGAAGGTGTTTATCCGGTTT
TGCGACGAGCTGATTGTGGACTATGATTCCGACAGCAACACCACCCAGGGATTTGAGGAGTTGGT
GGAAAAGGATAAAAAGGAGTAGATACACTAGTGGTTACGGTAGTGGTTATGATAATAGAGGTGAC
AAAGACAACGAGGTGAAACGATGGTTAGTACGTGTAGAGAGTGGGGAAAGAACGTGAAGCAACGT
GAAGTAGCGTGAATGGAGTCATGTGAGATGTAAAGCTGGGAGTTGTAGGTACCGGGCCAAACAAC
GTGAATGAAATGAGGAAGAAACGTGAAGAGAGTAACGTGAAGTAA
Right flanking sequence: Indices 30717 -- 31216
CGAGAGATCTCGTGAATGTAACGTGAATTCACTCGTGAATCTGGTCTCGTGAATCTGGTCTCGTG
AACACTTGTCCCGTGAGCAACGTATTAGACCTTCCTAGATATCCTCTAATTAGTGTACTGGAAAG
ATCCGAGATACATCTCCTCGTATCGACCTCTCAACCCCCACCATGTACTTCTCTCTAAACTCCCT
TCTCTAGCGTCACCCCAGTTTCTCGCCACCCCAGTTTCTCGCCCCCCCAGTTTCGCCACCGTTTC
TCGCTACCGTTAACCTAGGCTATCAGGTCCGTTCGTGCGAACTTGTGGGGTGGCAGAGGGGCAGT
TCCACGGGTATGGCGGCGCACCCGGGCAGGCCAGGTTGCTACTCCAAGTGTTACGAGCTTTTACG
GCCCCGTCTCGGTCGTGATAGCCGCCTCGCCGCGACCCCGGGCCTACTGCAACCTACTTGCATTA
TCTACGTACCCCTGGACCCTCCACCCCGTGGCCCATTTTCTAGTG
Found at i:30767 original size:14 final size:14
Alignment explanation
Indices: 30748--30783 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
30738 CGTGAATTCA
30748 CTCGTGAATCTGGT
1 CTCGTGAATCTGGT
30762 CTCGTGAATCTGGT
1 CTCGTGAATCTGGT
30776 CTCGTGAA
1 CTCGTGAA
30784 CACTTGTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (14 bp):
CTCGTGAATCTGGT
Left flanking sequence: Indices 30248 -- 30747
GCCACAAGGAGTTTACCATTAGCCAGTTGAACTTGATCGAGAACAAACTCAAGTTTTTGATTCGT
CGCGACGATCCGTTCATCAAGAAGGTGTTTATCCGGTTTTGCGACGAGCTGATTGTGGACTATGA
TTCCGACAGCAACACCACCCAGGGATTTGAGGAGTTGGTGGAAAAGGATAAAAAGGAGTAGATAC
ACTAGTGGTTACGGTAGTGGTTATGATAATAGAGGTGACAAAGACAACGAGGTGAAACGATGGTT
AGTACGTGTAGAGAGTGGGGAAAGAACGTGAAGCAACGTGAAGTAGCGTGAATGGAGTCATGTGA
GATGTAAAGCTGGGAGTTGTAGGTACCGGGCCAAACAACGTGAATGAAATGAGGAAGAAACGTGA
AGAGAGTAACGTGAAGTAACGTGAATTGAGTCTCGTGCGTTTCGTCTCGTGAATTGAGTCTCGTG
AGTGATGTCTCGTGCGAGAGATCTCGTGAATGTAACGTGAATTCA
Right flanking sequence: Indices 30784 -- 31283
CACTTGTCCCGTGAGCAACGTATTAGACCTTCCTAGATATCCTCTAATTAGTGTACTGGAAAGAT
CCGAGATACATCTCCTCGTATCGACCTCTCAACCCCCACCATGTACTTCTCTCTAAACTCCCTTC
TCTAGCGTCACCCCAGTTTCTCGCCACCCCAGTTTCTCGCCCCCCCAGTTTCGCCACCGTTTCTC
GCTACCGTTAACCTAGGCTATCAGGTCCGTTCGTGCGAACTTGTGGGGTGGCAGAGGGGCAGTTC
CACGGGTATGGCGGCGCACCCGGGCAGGCCAGGTTGCTACTCCAAGTGTTACGAGCTTTTACGGC
CCCGTCTCGGTCGTGATAGCCGCCTCGCCGCGACCCCGGGCCTACTGCAACCTACTTGCATTATC
TACGTACCCCTGGACCCTCCACCCCGTGGCCCATTTTCTAGTGCTCGTCGCCAGCAAACAACCAG
ACCCCACTACCGCTGACCCCACCGTGACCACAAAACCCTGTTCCG
Found at i:30943 original size:16 final size:16
Alignment explanation
Indices: 30922--30965 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
30912 TCTCTAGCGT
30922 CACCCCAGTTTCTCGC
1 CACCCCAGTTTCTCGC
30938 CACCCCAGTTTCTCGC
1 CACCCCAGTTTCTCGC
*
30954 CCCCCCAGTTTC
1 CACCCCAGTTTC
30966 GCCACCGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.11, C:0.52, G:0.11, T:0.25
Consensus pattern (16 bp):
CACCCCAGTTTCTCGC
Left flanking sequence: Indices 30422 -- 30921
AGGATAAAAAGGAGTAGATACACTAGTGGTTACGGTAGTGGTTATGATAATAGAGGTGACAAAGA
CAACGAGGTGAAACGATGGTTAGTACGTGTAGAGAGTGGGGAAAGAACGTGAAGCAACGTGAAGT
AGCGTGAATGGAGTCATGTGAGATGTAAAGCTGGGAGTTGTAGGTACCGGGCCAAACAACGTGAA
TGAAATGAGGAAGAAACGTGAAGAGAGTAACGTGAAGTAACGTGAATTGAGTCTCGTGCGTTTCG
TCTCGTGAATTGAGTCTCGTGAGTGATGTCTCGTGCGAGAGATCTCGTGAATGTAACGTGAATTC
ACTCGTGAATCTGGTCTCGTGAATCTGGTCTCGTGAACACTTGTCCCGTGAGCAACGTATTAGAC
CTTCCTAGATATCCTCTAATTAGTGTACTGGAAAGATCCGAGATACATCTCCTCGTATCGACCTC
TCAACCCCCACCATGTACTTCTCTCTAAACTCCCTTCTCTAGCGT
Right flanking sequence: Indices 30966 -- 31465
GCCACCGTTTCTCGCTACCGTTAACCTAGGCTATCAGGTCCGTTCGTGCGAACTTGTGGGGTGGC
AGAGGGGCAGTTCCACGGGTATGGCGGCGCACCCGGGCAGGCCAGGTTGCTACTCCAAGTGTTAC
GAGCTTTTACGGCCCCGTCTCGGTCGTGATAGCCGCCTCGCCGCGACCCCGGGCCTACTGCAACC
TACTTGCATTATCTACGTACCCCTGGACCCTCCACCCCGTGGCCCATTTTCTAGTGCTCGTCGCC
AGCAAACAACCAGACCCCACTACCGCTGACCCCACCGTGACCACAAAACCCTGTTCCGAGGTCCA
GAGGTCATCGACGAACAACTGCTTTGTGTAGATCATTAGATTATTCAGACAATCACCACCACCGT
GTGCAGGGCTCAAGTAGCTATTGTAAACCCTGGCGAGGAAGGCAGTCGTCCGACGGCGCCGGCGG
GCCCGAACCCCGGGCGAAAAACGCGGGTGCCAAGGCAGACTCGAA
Found at i:35682 original size:18 final size:18
Alignment explanation
Indices: 35616--35671 Score: 112
Period size: 18 Copynumber: 3.1 Consensus size: 18
35606 CCTGCAAAAT
35616 CCGCAGAGCCCACCAAAC
1 CCGCAGAGCCCACCAAAC
35634 CCGCAGAGCCCACCAAAC
1 CCGCAGAGCCCACCAAAC
35652 CCGCAGAGCCCACCAAAC
1 CCGCAGAGCCCACCAAAC
35670 CC
1 CC
35672 ACCGAGACCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (18 bp):
CCGCAGAGCCCACCAAAC
Left flanking sequence: Indices 35116 -- 35615
AAGAAGAAGGCCGGGGTGTTTGAGTTGAGCGACGAGATTACGGCGCAATTGGACGAGCTCAAGAA
GCTCGTGGACCAGAACGATAACGAGATAGCCGACCGGGTGAACAAGTTGGTGAAGCGAATTGCCA
AGGTGGAAGAGCAGTTAAAGAAGTAATGATTAATGACACGAGAACGAGACTGAAGGTGGAGACAC
TGACAATGTAGATACATGAAAGTAATAGAGGCTAAAAAAAGACACTTGAGGGAACATGTCATATA
TCAACCACGCTGGAGGGTTGATTTTTCTATTCCCAGTGTCCCTTCTCTCATCTGTTCTGCGTTTC
CCTCTGTCTCCTCTTTTCCCATCAAGCCGCACGGTTTTTCCACACTACTCCATGGGGGCTAAAAG
GTCCAAGAACCAGTTCCGCCGGGAACAGGCGAAAAAGCGCAAGCTAGAGCAGGCCCAGAATGCCC
AGGATACTCCAGCAGAGCCACCGGCCGATCCCACACCTGCAAAAT
Right flanking sequence: Indices 35672 -- 36171
ACCGAGACCACACCAGACAAACCCGCGGCCAAGCGCCAAAAGCTCGAGGAACCAGAAGTGGACAC
ATCCAGCGAGCTCTTCCACCAGTTTGAGCAAGTGTTTGAGCGGTTCAAGCCTCAGGAGGCGCCCG
CCGAGCCCACTGCCCTCGTCAAGGCCGAAGAGCCTGTGAGCGAGCTGGAACCCGAGCTGGAGCCG
GAAGAGGACAAGCTCACACGGCGCGAAGCGAAGCAGCGCACCAAGGTCCCGCTCCTGCAACTCAA
ACTCCTGACCAAGTTCCCTGAGTTGGTCGAGTGGTACGATGCCGATGCCCCCGACCCCGAGCTCT
GCGTGGCCCTTAAAACGAGGCCCAACGCGGTCCAGGTGCCCGGCCAGTGGCGTTCACGCCGCGAC
TACCTTGCCAAGAAACAGCTAGACCGCCCTCCGTTCAAATTGCCCGCCTACATCGCGGAAACGGG
CATCATGGACATGCGCGAAGACCCCAGCGAGCAGTCTCTCAAGCA
Found at i:36646 original size:12 final size:12
Alignment explanation
Indices: 36638--36666 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
36628 GGATAAGCGT
36638 GAGCCTAAGGTG
1 GAGCCTAAGGTG
36650 GAGCCTAAGGTG
1 GAGCCTAAGGTG
36662 GAGCC
1 GAGCC
36667 CAAGCGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.21, G:0.41, T:0.14
Consensus pattern (12 bp):
GAGCCTAAGGTG
Left flanking sequence: Indices 36138 -- 36637
TGCGCGAAGACCCCAGCGAGCAGTCTCTCAAGCAGCAGCAGCGAGCCAAGGTGCAAGTGCGGTTG
GGTAAGCTCGACATTGACTACCGCAAGCTCCACGACGCCTTTTTCAAGTTCCAGTATCAGCAAAA
ACCACGGCTATACAAGTTTGGCGACTGCTACTACGAGGGCCGCGATGACGCCAAGGAAATGGACG
AGTTGGCAGGCTTGCGGCCTGGGGTGGTGCTGAAGCAGTTGCGTGCGGCGTTGGGGATGCTGGAG
ACTGACACCAAGGCACCGCCCCCGTGGATTGCCGTGATGCAACGGGTGGGAAAGCCGCCAGCGTA
CGCCTCGTTGATGATCCCTGGGGTTGATGGCAGCTACAACAACGAGGGGTACCACGTAGAGCGCC
AGCGACGCACGCGAGCAGGCGGGTATGGCGAGAAATGGGGAGTGCTCCTGATGGATTCTTCGCTG
GAAGAAGAAGAGGAAGAGGAAGAAGATAAGGGGAAGGATAAGCGT
Right flanking sequence: Indices 36667 -- 37166
CAAGCGCGAACCCGCACGGGTTGAGGAGAAACCACGGGCGGAACGGGTGGCCGTGGAGCTGTTTG
GGACAGTGGCACTGCTGGAGAAGCCCGTGACCGAGGAAAGCAGCGATAAACAGCTTTTTACCGTG
GTGGACGAGCACGCTGGCAGTCTCCGCGAGCTTCTCGAGAAGCAGTTCAGCGGCGAGCCCAAGGA
CGAGAAGAAGCAGAAGGAGAAGGAAAAGGAGACAAGGAAGGAGAAGGAGCAGCCCAAGGAGGCGA
AGGCGGACGAGATTGACTCGTTCAAGTTTTAGGCATAGCATTGTATTATAATAGTAATAGAGAAT
GAGAAGTAGACAGAAGGCAAGGTCCGGTTATCCATAATGGTATATTCCTGGTTGTTGTAGCTATC
GATTGTTTTCTTACAACTGCCAGTCCTTAAAGGTTCCTTTCCACACTGGTATTACCTCGCCATCG
CAGCTATCGGTTGGCTATTTGCAATGGACCGTTCGCGAGCCTGTC
Found at i:40829 original size:13 final size:13
Alignment explanation
Indices: 40733--40822 Score: 99
Period size: 13 Copynumber: 6.9 Consensus size: 13
40723 TACGACCCAC
*
40733 CCACTACCCACCT
1 CCACTAACCACCT
* *
40746 CCGCTACCCACCT
1 CCACTAACCACCT
*
40759 CCACTAACCACTT
1 CCACTAACCACCT
* * * *
40772 CCACTGATCTCTT
1 CCACTAACCACCT
*
40785 CCACCAACCACCT
1 CCACTAACCACCT
40798 CCACTAACCACCT
1 CCACTAACCACCT
40811 CCACTAACCACC
1 CCACTAACCACC
40823 ACTACTAGCC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 64 1.00
ACGTcount: A:0.26, C:0.54, G:0.02, T:0.18
Consensus pattern (13 bp):
CCACTAACCACCT
Left flanking sequence: Indices 40233 -- 40732
GTTTTGGGGGGGCAACACCAGAGCGGGACTTGGACCAGTGGAGGCACTGGCCTCGCTAGTGCTGT
GACGTTTGTTCGCTGGCGTTTCTTTTGCCATTGACGAAACGTGGGGTCGAAAGATTGAAGGCGTA
TAGTGAAGGGAAATGGGGAATTACGAGAAAGAACACGCCTCGCAGGGACTTGGGAGGTACAAATT
GTAATTGAGTGTGAATCACTAAGCAGTTGAGACTGGATTCTAGCTGAAGAACAGTGTCGTAAACT
ACTCTAGAATTACGAAGTAGGCCATTACTACGTAGTAGACCACTGCAACGTGCCATTCTCGTAGC
ATCCACCGAATCACTGATCTTACTGATATAATTATTCTTCAGCCTGTACACCCCAGTAGAAAACG
CTATATCCGGTGCAAACTACCACCGTCCAGTATCCTTCTCCACCATCGCTTCCCTATTACCTCCA
CTACTAACATGCAATACCCACTTTTATCACTTCCCTACGACCCAC
Right flanking sequence: Indices 40823 -- 41322
ACTACTAGCCACCCCTACTCCCTACTCTATAATTACCGTGTATTCCTACTCCTTCTTCGCCTTGT
TGTTGTCAGGGTCCGACTTCAACATAAACATCACCAACGGGATCACTATGTACACCCAGTTCTTC
TGGATAAACGACCGGTCGTCCACCACCACCTCATGCGTCTCCTCCACCTCGCGCTCGATCTCGTT
GCCGTTCTCGTCCTTCTCCTTGACAATCTTCTTCACCGTGGTCACCTCCTTGCGCGGCCCCTTCT
TCTTCTTCTCCGCAGCCTCCCCCTGCTGCGCCCGGTTCACCACCACGTACGCCTCGAGGTTCGGG
TTGGCGGCCTGGCGGTACTTGTGCACCTTGACCGCACCGGGGCGGGCCACCCACGCAAGCCGCTC
GATGGACCCGTCCTGGTTCAAGAAAACGTCTATGCTCCAGTCATCGTCCTTCACCGCCAGGTAGC
CAAAGCACTCGTGGTCGGGGAGATCGTGGGTCCCGATGCACTGCG
Found at i:40829 original size:26 final size:26
Alignment explanation
Indices: 40784--40835 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
40774 ACTGATCTCT
*
40784 TCCACCAACCACCTCCACTAACCACC
1 TCCACCAACCACCACCACTAACCACC
* * *
40810 TCCACTAACCACCACTACTAGCCACC
1 TCCACCAACCACCACCACTAACCACC
40836 CCTACTCCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.54, G:0.02, T:0.13
Consensus pattern (26 bp):
TCCACCAACCACCACCACTAACCACC
Left flanking sequence: Indices 40284 -- 40783
CTCGCTAGTGCTGTGACGTTTGTTCGCTGGCGTTTCTTTTGCCATTGACGAAACGTGGGGTCGAA
AGATTGAAGGCGTATAGTGAAGGGAAATGGGGAATTACGAGAAAGAACACGCCTCGCAGGGACTT
GGGAGGTACAAATTGTAATTGAGTGTGAATCACTAAGCAGTTGAGACTGGATTCTAGCTGAAGAA
CAGTGTCGTAAACTACTCTAGAATTACGAAGTAGGCCATTACTACGTAGTAGACCACTGCAACGT
GCCATTCTCGTAGCATCCACCGAATCACTGATCTTACTGATATAATTATTCTTCAGCCTGTACAC
CCCAGTAGAAAACGCTATATCCGGTGCAAACTACCACCGTCCAGTATCCTTCTCCACCATCGCTT
CCCTATTACCTCCACTACTAACATGCAATACCCACTTTTATCACTTCCCTACGACCCACCCACTA
CCCACCTCCGCTACCCACCTCCACTAACCACTTCCACTGATCTCT
Right flanking sequence: Indices 40836 -- 41335
CCTACTCCCTACTCTATAATTACCGTGTATTCCTACTCCTTCTTCGCCTTGTTGTTGTCAGGGTC
CGACTTCAACATAAACATCACCAACGGGATCACTATGTACACCCAGTTCTTCTGGATAAACGACC
GGTCGTCCACCACCACCTCATGCGTCTCCTCCACCTCGCGCTCGATCTCGTTGCCGTTCTCGTCC
TTCTCCTTGACAATCTTCTTCACCGTGGTCACCTCCTTGCGCGGCCCCTTCTTCTTCTTCTCCGC
AGCCTCCCCCTGCTGCGCCCGGTTCACCACCACGTACGCCTCGAGGTTCGGGTTGGCGGCCTGGC
GGTACTTGTGCACCTTGACCGCACCGGGGCGGGCCACCCACGCAAGCCGCTCGATGGACCCGTCC
TGGTTCAAGAAAACGTCTATGCTCCAGTCATCGTCCTTCACCGCCAGGTAGCCAAAGCACTCGTG
GTCGGGGAGATCGTGGGTCCCGATGCACTGCGGGGAGGCAATGTC
Found at i:40834 original size:13 final size:13
Alignment explanation
Indices: 40790--40841 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
40780 CTCTTCCACC
* *
40790 AACCACCTCCACT
1 AACCACCACTACT
* *
40803 AACCACCTCCACT
1 AACCACCACTACT
40816 AACCACCACTACT
1 AACCACCACTACT
* *
40829 AGCCACCCCTACT
1 AACCACCACTACT
40842 CCCTACTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.15
Consensus pattern (13 bp):
AACCACCACTACT
Left flanking sequence: Indices 40290 -- 40789
AGTGCTGTGACGTTTGTTCGCTGGCGTTTCTTTTGCCATTGACGAAACGTGGGGTCGAAAGATTG
AAGGCGTATAGTGAAGGGAAATGGGGAATTACGAGAAAGAACACGCCTCGCAGGGACTTGGGAGG
TACAAATTGTAATTGAGTGTGAATCACTAAGCAGTTGAGACTGGATTCTAGCTGAAGAACAGTGT
CGTAAACTACTCTAGAATTACGAAGTAGGCCATTACTACGTAGTAGACCACTGCAACGTGCCATT
CTCGTAGCATCCACCGAATCACTGATCTTACTGATATAATTATTCTTCAGCCTGTACACCCCAGT
AGAAAACGCTATATCCGGTGCAAACTACCACCGTCCAGTATCCTTCTCCACCATCGCTTCCCTAT
TACCTCCACTACTAACATGCAATACCCACTTTTATCACTTCCCTACGACCCACCCACTACCCACC
TCCGCTACCCACCTCCACTAACCACTTCCACTGATCTCTTCCACC
Right flanking sequence: Indices 40842 -- 41341
CCCTACTCTATAATTACCGTGTATTCCTACTCCTTCTTCGCCTTGTTGTTGTCAGGGTCCGACTT
CAACATAAACATCACCAACGGGATCACTATGTACACCCAGTTCTTCTGGATAAACGACCGGTCGT
CCACCACCACCTCATGCGTCTCCTCCACCTCGCGCTCGATCTCGTTGCCGTTCTCGTCCTTCTCC
TTGACAATCTTCTTCACCGTGGTCACCTCCTTGCGCGGCCCCTTCTTCTTCTTCTCCGCAGCCTC
CCCCTGCTGCGCCCGGTTCACCACCACGTACGCCTCGAGGTTCGGGTTGGCGGCCTGGCGGTACT
TGTGCACCTTGACCGCACCGGGGCGGGCCACCCACGCAAGCCGCTCGATGGACCCGTCCTGGTTC
AAGAAAACGTCTATGCTCCAGTCATCGTCCTTCACCGCCAGGTAGCCAAAGCACTCGTGGTCGGG
GAGATCGTGGGTCCCGATGCACTGCGGGGAGGCAATGTCGGGAGT
Found at i:43294 original size:12 final size:12
Alignment explanation
Indices: 43279--43325 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
43269 CACAGTAGAA
43279 GGAGCGGTCGAG
1 GGAGCGGTCGAG
* *
43291 GGAGCAGTCGAA
1 GGAGCGGTCGAG
43303 GGAGCGGTCGAG
1 GGAGCGGTCGAG
43315 GGAGCGGTCGA
1 GGAGCGGTCGA
43326 AGGAACCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.21, C:0.17, G:0.53, T:0.09
Consensus pattern (12 bp):
GGAGCGGTCGAG
Left flanking sequence: Indices 42779 -- 43278
TGGCGTCGGTGGAGGTGGTAGTCTCCACGGTGGTCTCCGCCTCGGCCCCAGCACCCATCTCAGTG
GTAGCCACGGGGGTGTTGGTGTCGAGCTCGGGAGTGGTAGAGTCAGTGGAGGAGGTGGTGCCACC
AACAGTGGTGATGCCACCCAGCTGCTGCAGCGGGATCACGTCGATCACGTCGTACAGGGTGGCGG
TCTGTGCCAGCAGCGAGTCGTCCAACTCGATGGGCTTGTGCTGGTCGGCCGAGGTCAAGGGGGAG
CCTGCGGTCAGCGAGCGGGTCAGCAACTCAGCCAGCGAGGGAGTGACGGTTTGTAAGGTGGTGTC
GGAGGTAGTGTCCTGGGACTCTGGGGTGGTTTGGGTGGTAGTGTCTTGGGTGGAGGTGTTTTCGA
TAACCTGGGACGAGGTGTCCTGGACAGAGGTGGTGGCCGGAGACGAGGGCACCACGGGAACCGAG
GATTGGGTCGACGAGGTGGCCACGGTCGAAGAAGGCACAGTAGAA
Right flanking sequence: Indices 43326 -- 43825
AGGAACCACGGACGAGTCCGCGGGCGAGGTGGGCAACGCGTTGCCAGACGCCAACGCCTTGACAG
CCTGGCACATGTTCTTCCCGTCCTCCACGTTGGCAAACGCCAGCGAGGCGTCCCAGAACGAGAAC
CCTCCGAAGTGGGGGTTCAGCAATACACTCTCGGGCAACTTCTGCTTGATCTCGGCAGCGGAGTT
GTAGCCAAAACTGGCCGACGACGGCAACCCGGCCAAACCCACGTACAACTTGATGTTCTTGTTGG
GCAGCTTGTTCTCGGCGTAGTCGACCCAGGTGTCAAAGTTGAAGTTGGGGCCCAACTGGCAGTAG
TTGTTGTAGAACTGGATAAAGGCAAAGTCAAGGTCAGCGTTGGCCATCACGTCACCCACCGAAGC
ATCGGGGTAGGGGCACTGGGGCGCAGCAGCGAGGTAGTACTGCTTCAGCGAGTCGGTCGCGAACT
TCTCCCGCAAACCCTTGGCCAACGCAGTGTAGCCCACCTGGTTCT
Found at i:43303 original size:24 final size:24
Alignment explanation
Indices: 43271--43329 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
43261 GAAGAAGGCA
*
43271 CAGTAGAAGGAGCGGTCGAGGGAG
1 CAGTCGAAGGAGCGGTCGAGGGAG
43295 CAGTCGAAGGAGCGGTCGAGGGAG
1 CAGTCGAAGGAGCGGTCGAGGGAG
*
43319 CGGTCGAAGGA
1 CAGTCGAAGGA
43330 ACCACGGACG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.49, T:0.08
Consensus pattern (24 bp):
CAGTCGAAGGAGCGGTCGAGGGAG
Left flanking sequence: Indices 42771 -- 43270
GCCGCCGGTGGCGTCGGTGGAGGTGGTAGTCTCCACGGTGGTCTCCGCCTCGGCCCCAGCACCCA
TCTCAGTGGTAGCCACGGGGGTGTTGGTGTCGAGCTCGGGAGTGGTAGAGTCAGTGGAGGAGGTG
GTGCCACCAACAGTGGTGATGCCACCCAGCTGCTGCAGCGGGATCACGTCGATCACGTCGTACAG
GGTGGCGGTCTGTGCCAGCAGCGAGTCGTCCAACTCGATGGGCTTGTGCTGGTCGGCCGAGGTCA
AGGGGGAGCCTGCGGTCAGCGAGCGGGTCAGCAACTCAGCCAGCGAGGGAGTGACGGTTTGTAAG
GTGGTGTCGGAGGTAGTGTCCTGGGACTCTGGGGTGGTTTGGGTGGTAGTGTCTTGGGTGGAGGT
GTTTTCGATAACCTGGGACGAGGTGTCCTGGACAGAGGTGGTGGCCGGAGACGAGGGCACCACGG
GAACCGAGGATTGGGTCGACGAGGTGGCCACGGTCGAAGAAGGCA
Right flanking sequence: Indices 43330 -- 43829
ACCACGGACGAGTCCGCGGGCGAGGTGGGCAACGCGTTGCCAGACGCCAACGCCTTGACAGCCTG
GCACATGTTCTTCCCGTCCTCCACGTTGGCAAACGCCAGCGAGGCGTCCCAGAACGAGAACCCTC
CGAAGTGGGGGTTCAGCAATACACTCTCGGGCAACTTCTGCTTGATCTCGGCAGCGGAGTTGTAG
CCAAAACTGGCCGACGACGGCAACCCGGCCAAACCCACGTACAACTTGATGTTCTTGTTGGGCAG
CTTGTTCTCGGCGTAGTCGACCCAGGTGTCAAAGTTGAAGTTGGGGCCCAACTGGCAGTAGTTGT
TGTAGAACTGGATAAAGGCAAAGTCAAGGTCAGCGTTGGCCATCACGTCACCCACCGAAGCATCG
GGGTAGGGGCACTGGGGCGCAGCAGCGAGGTAGTACTGCTTCAGCGAGTCGGTCGCGAACTTCTC
CCGCAAACCCTTGGCCAACGCAGTGTAGCCCACCTGGTTCTGGTT
Found at i:49293 original size:22 final size:22
Alignment explanation
Indices: 49274--49316 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
49264 TCGAACCAGA
49274 CAACTAGACTAACTGGACCAAAT
1 CAACTAGA-TAACTGGACCAAAT
* *
49297 GAACTAGATCACTGGACCAA
1 CAACTAGATAACTGGACCAA
49317 CTGGACTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (22 bp):
CAACTAGATAACTGGACCAAAT
Left flanking sequence: Indices 48774 -- 49273
ATCAAGCAGCGATACATCCTCTTTGAGATCCACTACCCGCTTGAGGGAGACTATGAGGACCCGGA
CCAGTCGCTTCTCGCGTTCCACCAGCCGCTGCCCTCCACCATCTCCGCCAAGTCCCTCCTCCGCA
CCTTCCGCAAACTGATAGAGGACAACTACGGAGAGGTGGGAGCAGGGTCAACAGGGCTCCAGCTA
CAAGTCAAATACTTCAGCAACCGCACCAGTACGGGAATCGTGCGGTGTCCACGCGGCAGCTACGA
AACGTTGGTCGGAGCGCTCGCTACCATCGACAGCCTCGAGGCCCAGACGGCTCTGGTGCGATGCT
TGCACGTGAGTGGCACCATACGCAAGTGCCAGGAGTGGAGCATGGCCTACAACAAGGGGTTGATG
CGGAAGATCGGGGGAAACCGCATGGAGACTCCGAAAATGGAGCGGGGGTAGCCTGACTCACATTG
AAGCCACAAGATGATATTGGATTGAACTGGATCAATCGAACCAGA
Right flanking sequence: Indices 49317 -- 49816
CTGGACTCGAACCAAACCAGACTTGATCCAAACTGGACGAAACTGACAGAATCTGACCAAATTGG
ACTAAAATGGACTACACCGGGTCCACAATTGTACCAATATTAGACCACTACCACCCCTTCAGCAT
GCCGACAGGCCAACTCATAGAATTATTACGTATTAATCTACAGTGTGCATCCACTGGGTACAGAA
CTCGGTGTATTCGCGCGAGAACGCAGCCACCACGGGCTCCCCATTAACCGTCTCGTCGTCGAACC
CCGGATAGTAGCAGAAAGTAGTGTTGAGCCCCCCGACAGGGGTACTGACAATGTTCAAAATGGTG
TTGTACGACGCTCCCGTACACAGCACAAACTTGGCGTCGAGCACCCGGTAGCGGTTGTGCTCGGT
GGGCACCCGGCCCAAGTTGGAGATGGTGAGCAGCTTCTTGGTTCCCCGAAGCGTCAGCTCCATCA
CCTCGGAGTACTCGCGGTAGCGCACCAACCCCAACTCGCGGAAGG
Found at i:51375 original size:15 final size:16
Alignment explanation
Indices: 51332--51395 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
51322 TGTGAGAATG
51332 ACAAATGAGGCT---A
1 ACAAATGAGGCTCCAA
*
51345 ACAAATGAGCCTCCAA
1 ACAAATGAGGCTCCAA
51361 ACAAAT-AGGCTCCAA
1 ACAAATGAGGCTCCAA
*
51376 A-AAAGTGAGGCTCAAA
1 ACAAA-TGAGGCTCCAA
51392 ACAA
1 ACAA
51396 TAAACTTAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
13 11 0.26
14 3 0.07
15 10 0.24
16 16 0.38
17 2 0.05
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.12
Consensus pattern (16 bp):
ACAAATGAGGCTCCAA
Left flanking sequence: Indices 50832 -- 51331
GAGCAGGAAGTTTGTGTAGAAGCCGAGGCCGATGCGGACAATGTACCAGCGTTCGAGCCACGAGG
GCTGGCGGCTGGGCTTGGGCATGGGCGGTCTGGCCCGCATCCGCCGGGTCCGCATGGTATATATA
CGTATTCAGGTCGATCTGGGGCGATATGCAACCGATGCCGCGACGAGGCGCGAGTGGGCTTATCG
AAGCGGTGGGGGATGGTGGGGGAGGGGTCGCTGAGGGGCTGGGGGGCTACGGGTGGGCTACAATG
GGTGGTTGCCGTGGTGTGGGGGCTAGACGGCCACGAAGCCGCCACCAACACCGTCAACGTGGGGC
TCGTGAGTCATGTGGCTTACGGGTGGCTCGTAACCGCTATGAGTAATACGGGTCCCGGTAGCGGA
CGGGAAGCAGGAGCGAGCCGGTGGGGCTGCGGGGCTCGTACCCAGCCGCTTAGCCTGTTGTGGGT
GTCCACGGCGGGTGTGTTTACGTTCTTCGTTGACATGTGAGAATG
Right flanking sequence: Indices 51396 -- 51895
TAAACTTAGCGGGTGGCTGGGTGCCACCACTACTGCTGAGGACGTCCAAGAACGGTCAATGCCGT
TGACGGTCGCATGCTCACACGGCGTCATGCGGGTAATTAGTGCATCCTGTTTACCTGCTGTGGTA
CATACAACTGCACCAATCACCGGTGAGACCCAAAACCCGCTAAGCAGGCCGCTACGACAGCCGCT
CCCCCCACCGCACTCCCCACTCTCCACCACACTCCTCTGCCCACCCTTATCACCCGTATCACCTT
TCCACCCCGTCACCTTTCCCACCCGTCACCTTTTCTCCCCTCTTCCTACCCGCCAACGGTCAATG
CTACGTCGCCATGCAGCTTCGATCGACTGTACATAAATCCAACGGCGATCTGGATTGCACAGCTC
AAGGAGGGGAACGACAATCAGCGCGTGACCATTGTCCCGAAAAAGCCCCTTTGCGGAGCCTTGAC
GCTAGCGCTAGCCTAAGCACGTAATTAGCGGCAACCAGATGTCCA
Found at i:51661 original size:17 final size:17
Alignment explanation
Indices: 51641--51688 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
51631 CCACCCTTAT
51641 CACCCGTATCACCTTT-C
1 CACCCGT-TCACCTTTCC
51658 CACCCCG-TCACCTTTCC
1 CA-CCCGTTCACCTTTCC
51675 CACCCG-TCACCTTT
1 CACCCGTTCACCTTT
51689 TCTCCCCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 20 0.69
17 5 0.17
18 4 0.14
ACGTcount: A:0.15, C:0.52, G:0.06, T:0.27
Consensus pattern (17 bp):
CACCCGTTCACCTTTCC
Left flanking sequence: Indices 51141 -- 51640
ACCGTCAACGTGGGGCTCGTGAGTCATGTGGCTTACGGGTGGCTCGTAACCGCTATGAGTAATAC
GGGTCCCGGTAGCGGACGGGAAGCAGGAGCGAGCCGGTGGGGCTGCGGGGCTCGTACCCAGCCGC
TTAGCCTGTTGTGGGTGTCCACGGCGGGTGTGTTTACGTTCTTCGTTGACATGTGAGAATGACAA
ATGAGGCTAACAAATGAGCCTCCAAACAAATAGGCTCCAAAAAAGTGAGGCTCAAAACAATAAAC
TTAGCGGGTGGCTGGGTGCCACCACTACTGCTGAGGACGTCCAAGAACGGTCAATGCCGTTGACG
GTCGCATGCTCACACGGCGTCATGCGGGTAATTAGTGCATCCTGTTTACCTGCTGTGGTACATAC
AACTGCACCAATCACCGGTGAGACCCAAAACCCGCTAAGCAGGCCGCTACGACAGCCGCTCCCCC
CACCGCACTCCCCACTCTCCACCACACTCCTCTGCCCACCCTTAT
Right flanking sequence: Indices 51689 -- 52188
TCTCCCCTCTTCCTACCCGCCAACGGTCAATGCTACGTCGCCATGCAGCTTCGATCGACTGTACA
TAAATCCAACGGCGATCTGGATTGCACAGCTCAAGGAGGGGAACGACAATCAGCGCGTGACCATT
GTCCCGAAAAAGCCCCTTTGCGGAGCCTTGACGCTAGCGCTAGCCTAAGCACGTAATTAGCGGCA
ACCAGATGTCCATGTTCTGATAGTCCGATAGTAAGCGAGAGAAAAATAAACATGCCCAAACAGGC
GCATGGCATCTAAACAAAGAAACCTAGGCACGGCTAATCGTCCAGCGAGACAACAATGAGAAAGG
GACAAACATGAAAAGGGACAACCATGAAAGGGAAATAGAAAGGGTGGTACGGCTGGGGGGCCGCG
AGCGGCGCCCCCCAGACCCCCCAACGCCTTCGTGGTTCACAGAAGATGGGATTGATACCCTCATT
TTCTGTTCTCTTTCTCTCTTCTCTTTTCCCTTTTCTCTCTTCTCT
Found at i:51690 original size:17 final size:17
Alignment explanation
Indices: 51649--51688 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
51639 ATCACCCGTA
51649 TCACCTTT-CCACCCCG
1 TCACCTTTCCCACCCCG
51665 TCACCTTTCCCA-CCCG
1 TCACCTTTCCCACCCCG
51681 TCACCTTT
1 TCACCTTT
51689 TCTCCCCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.12, C:0.53, G:0.05, T:0.30
Consensus pattern (17 bp):
TCACCTTTCCCACCCCG
Left flanking sequence: Indices 51149 -- 51648
CGTGGGGCTCGTGAGTCATGTGGCTTACGGGTGGCTCGTAACCGCTATGAGTAATACGGGTCCCG
GTAGCGGACGGGAAGCAGGAGCGAGCCGGTGGGGCTGCGGGGCTCGTACCCAGCCGCTTAGCCTG
TTGTGGGTGTCCACGGCGGGTGTGTTTACGTTCTTCGTTGACATGTGAGAATGACAAATGAGGCT
AACAAATGAGCCTCCAAACAAATAGGCTCCAAAAAAGTGAGGCTCAAAACAATAAACTTAGCGGG
TGGCTGGGTGCCACCACTACTGCTGAGGACGTCCAAGAACGGTCAATGCCGTTGACGGTCGCATG
CTCACACGGCGTCATGCGGGTAATTAGTGCATCCTGTTTACCTGCTGTGGTACATACAACTGCAC
CAATCACCGGTGAGACCCAAAACCCGCTAAGCAGGCCGCTACGACAGCCGCTCCCCCCACCGCAC
TCCCCACTCTCCACCACACTCCTCTGCCCACCCTTATCACCCGTA
Right flanking sequence: Indices 51689 -- 52188
TCTCCCCTCTTCCTACCCGCCAACGGTCAATGCTACGTCGCCATGCAGCTTCGATCGACTGTACA
TAAATCCAACGGCGATCTGGATTGCACAGCTCAAGGAGGGGAACGACAATCAGCGCGTGACCATT
GTCCCGAAAAAGCCCCTTTGCGGAGCCTTGACGCTAGCGCTAGCCTAAGCACGTAATTAGCGGCA
ACCAGATGTCCATGTTCTGATAGTCCGATAGTAAGCGAGAGAAAAATAAACATGCCCAAACAGGC
GCATGGCATCTAAACAAAGAAACCTAGGCACGGCTAATCGTCCAGCGAGACAACAATGAGAAAGG
GACAAACATGAAAAGGGACAACCATGAAAGGGAAATAGAAAGGGTGGTACGGCTGGGGGGCCGCG
AGCGGCGCCCCCCAGACCCCCCAACGCCTTCGTGGTTCACAGAAGATGGGATTGATACCCTCATT
TTCTGTTCTCTTTCTCTCTTCTCTTTTCCCTTTTCTCTCTTCTCT
Found at i:52030 original size:16 final size:16
Alignment explanation
Indices: 52004--52046 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
51994 CGAGACAACA
52004 ATGAGAAAGGGACAAAC
1 ATGA-AAAGGGACAAAC
*
52021 ATGAAAAGGGACAACC
1 ATGAAAAGGGACAAAC
52037 ATG-AAAGGGA
1 ATGAAAAGGGA
52047 AATAGAAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 7 0.28
16 14 0.56
17 4 0.16
ACGTcount: A:0.51, C:0.12, G:0.30, T:0.07
Consensus pattern (16 bp):
ATGAAAAGGGACAAAC
Left flanking sequence: Indices 51504 -- 52003
ATCCTGTTTACCTGCTGTGGTACATACAACTGCACCAATCACCGGTGAGACCCAAAACCCGCTAA
GCAGGCCGCTACGACAGCCGCTCCCCCCACCGCACTCCCCACTCTCCACCACACTCCTCTGCCCA
CCCTTATCACCCGTATCACCTTTCCACCCCGTCACCTTTCCCACCCGTCACCTTTTCTCCCCTCT
TCCTACCCGCCAACGGTCAATGCTACGTCGCCATGCAGCTTCGATCGACTGTACATAAATCCAAC
GGCGATCTGGATTGCACAGCTCAAGGAGGGGAACGACAATCAGCGCGTGACCATTGTCCCGAAAA
AGCCCCTTTGCGGAGCCTTGACGCTAGCGCTAGCCTAAGCACGTAATTAGCGGCAACCAGATGTC
CATGTTCTGATAGTCCGATAGTAAGCGAGAGAAAAATAAACATGCCCAAACAGGCGCATGGCATC
TAAACAAAGAAACCTAGGCACGGCTAATCGTCCAGCGAGACAACA
Right flanking sequence: Indices 52047 -- 52546
AATAGAAAGGGTGGTACGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCGT
GGTTCACAGAAGATGGGATTGATACCCTCATTTTCTGTTCTCTTTCTCTCTTCTCTTTTCCCTTT
TCTCTCTTCTCTCTTCCCTTTTCTCTCTTCTCTTTTCTCTATCTGTCCCTCGTTCTTACATCACC
TCTACGCTCCTCACCTCAATGCTCCTCACCTCACTATGCAACCCCATTGCAGCCACCTCAAACTG
TCACGTTACCAAAACCACTACCGTCTGCTAGCAATGTTCACAATCTTGCTCTGAAACGCTCTCGC
TACCATTCCACATAACTCACCATCACAGCAAAAATGAGACAATCCAATACTTCTTCCCCTCACCC
AATTCTTCCACTTAACTACTCCACCCACCTACCACTATCACTACACTTTAATGCCACTACTGCCT
CCCTGCTTCCTGCTTTTCTCCCTGCTTCCTGCTTTTCTCCCTCCT
Found at i:52167 original size:7 final size:7
Alignment explanation
Indices: 52149--52216 Score: 75
Period size: 7 Copynumber: 9.9 Consensus size: 7
52139 TCATTTTCTG
52149 TTCTCT-
1 TTCTCTC
52155 TTCTCTC
1 TTCTCTC
*
52162 TTCTCTT
1 TTCTCTC
* *
52169 TTCCCTT
1 TTCTCTC
52176 TTCTCTC
1 TTCTCTC
52183 TTCTCTC
1 TTCTCTC
* *
52190 TTCCCTT
1 TTCTCTC
52197 TTCTCTC
1 TTCTCTC
*
52204 TTCTCTT
1 TTCTCTC
52211 TTCTCT
1 TTCTCT
52217 ATCTGTCCCT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
6 6 0.12
7 46 0.88
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (7 bp):
TTCTCTC
Left flanking sequence: Indices 51649 -- 52148
TCACCTTTCCACCCCGTCACCTTTCCCACCCGTCACCTTTTCTCCCCTCTTCCTACCCGCCAACG
GTCAATGCTACGTCGCCATGCAGCTTCGATCGACTGTACATAAATCCAACGGCGATCTGGATTGC
ACAGCTCAAGGAGGGGAACGACAATCAGCGCGTGACCATTGTCCCGAAAAAGCCCCTTTGCGGAG
CCTTGACGCTAGCGCTAGCCTAAGCACGTAATTAGCGGCAACCAGATGTCCATGTTCTGATAGTC
CGATAGTAAGCGAGAGAAAAATAAACATGCCCAAACAGGCGCATGGCATCTAAACAAAGAAACCT
AGGCACGGCTAATCGTCCAGCGAGACAACAATGAGAAAGGGACAAACATGAAAAGGGACAACCAT
GAAAGGGAAATAGAAAGGGTGGTACGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAAC
GCCTTCGTGGTTCACAGAAGATGGGATTGATACCCTCATTTTCTG
Right flanking sequence: Indices 52217 -- 52716
ATCTGTCCCTCGTTCTTACATCACCTCTACGCTCCTCACCTCAATGCTCCTCACCTCACTATGCA
ACCCCATTGCAGCCACCTCAAACTGTCACGTTACCAAAACCACTACCGTCTGCTAGCAATGTTCA
CAATCTTGCTCTGAAACGCTCTCGCTACCATTCCACATAACTCACCATCACAGCAAAAATGAGAC
AATCCAATACTTCTTCCCCTCACCCAATTCTTCCACTTAACTACTCCACCCACCTACCACTATCA
CTACACTTTAATGCCACTACTGCCTCCCTGCTTCCTGCTTTTCTCCCTGCTTCCTGCTTTTCTCC
CTCCTCCCTGCTTCTCTCGCACTCAATTCCACTCCCCGACACTGCCCGATCGGGCGAAAACCAAA
ACACCACCGCTAGATAAACAATTGTTCGCGACCATCTTCATCACGTCTGTCCCATGAGTTCTCCG
CTGAAGCTCCTGGCGCTCAAGTTCTTTGAGCAGATGGAGGAGCAG
Found at i:52178 original size:21 final size:21
Alignment explanation
Indices: 52154--52213 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
52144 TTCTGTTCTC
52154 TTTCTCTCTTCTCTTTTCCCT
1 TTTCTCTCTTCTCTTTTCCCT
*
52175 TTTCTCTCTTCTCTCTTCCCT
1 TTTCTCTCTTCTCTTTTCCCT
52196 TTTCTCTCTTCTCTTTTC
1 TTTCTCTCTTCTCTTTTC
52214 TCTATCTGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTCTCTCTTCTCTTTTCCCT
Left flanking sequence: Indices 51654 -- 52153
TTTCCACCCCGTCACCTTTCCCACCCGTCACCTTTTCTCCCCTCTTCCTACCCGCCAACGGTCAA
TGCTACGTCGCCATGCAGCTTCGATCGACTGTACATAAATCCAACGGCGATCTGGATTGCACAGC
TCAAGGAGGGGAACGACAATCAGCGCGTGACCATTGTCCCGAAAAAGCCCCTTTGCGGAGCCTTG
ACGCTAGCGCTAGCCTAAGCACGTAATTAGCGGCAACCAGATGTCCATGTTCTGATAGTCCGATA
GTAAGCGAGAGAAAAATAAACATGCCCAAACAGGCGCATGGCATCTAAACAAAGAAACCTAGGCA
CGGCTAATCGTCCAGCGAGACAACAATGAGAAAGGGACAAACATGAAAAGGGACAACCATGAAAG
GGAAATAGAAAGGGTGGTACGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTT
CGTGGTTCACAGAAGATGGGATTGATACCCTCATTTTCTGTTCTC
Right flanking sequence: Indices 52214 -- 52713
TCTATCTGTCCCTCGTTCTTACATCACCTCTACGCTCCTCACCTCAATGCTCCTCACCTCACTAT
GCAACCCCATTGCAGCCACCTCAAACTGTCACGTTACCAAAACCACTACCGTCTGCTAGCAATGT
TCACAATCTTGCTCTGAAACGCTCTCGCTACCATTCCACATAACTCACCATCACAGCAAAAATGA
GACAATCCAATACTTCTTCCCCTCACCCAATTCTTCCACTTAACTACTCCACCCACCTACCACTA
TCACTACACTTTAATGCCACTACTGCCTCCCTGCTTCCTGCTTTTCTCCCTGCTTCCTGCTTTTC
TCCCTCCTCCCTGCTTCTCTCGCACTCAATTCCACTCCCCGACACTGCCCGATCGGGCGAAAACC
AAAACACCACCGCTAGATAAACAATTGTTCGCGACCATCTTCATCACGTCTGTCCCATGAGTTCT
CCGCTGAAGCTCCTGGCGCTCAAGTTCTTTGAGCAGATGGAGGAG
Found at i:52179 original size:14 final size:14
Alignment explanation
Indices: 52149--52216 Score: 93
Period size: 14 Copynumber: 4.9 Consensus size: 14
52139 TCATTTTCTG
52149 TTCTC-TTTCTCTC
1 TTCTCTTTTCTCTC
* *
52162 TTCTCTTTTCCCTT
1 TTCTCTTTTCTCTC
*
52176 TTCTCTCTTCTCTC
1 TTCTCTTTTCTCTC
*
52190 TTCCCTTTTCTCTC
1 TTCTCTTTTCTCTC
52204 TTCTCTTTTCTCT
1 TTCTCTTTTCTCT
52217 ATCTGTCCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
13 5 0.11
14 41 0.89
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (14 bp):
TTCTCTTTTCTCTC
Left flanking sequence: Indices 51649 -- 52148
TCACCTTTCCACCCCGTCACCTTTCCCACCCGTCACCTTTTCTCCCCTCTTCCTACCCGCCAACG
GTCAATGCTACGTCGCCATGCAGCTTCGATCGACTGTACATAAATCCAACGGCGATCTGGATTGC
ACAGCTCAAGGAGGGGAACGACAATCAGCGCGTGACCATTGTCCCGAAAAAGCCCCTTTGCGGAG
CCTTGACGCTAGCGCTAGCCTAAGCACGTAATTAGCGGCAACCAGATGTCCATGTTCTGATAGTC
CGATAGTAAGCGAGAGAAAAATAAACATGCCCAAACAGGCGCATGGCATCTAAACAAAGAAACCT
AGGCACGGCTAATCGTCCAGCGAGACAACAATGAGAAAGGGACAAACATGAAAAGGGACAACCAT
GAAAGGGAAATAGAAAGGGTGGTACGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAAC
GCCTTCGTGGTTCACAGAAGATGGGATTGATACCCTCATTTTCTG
Right flanking sequence: Indices 52217 -- 52716
ATCTGTCCCTCGTTCTTACATCACCTCTACGCTCCTCACCTCAATGCTCCTCACCTCACTATGCA
ACCCCATTGCAGCCACCTCAAACTGTCACGTTACCAAAACCACTACCGTCTGCTAGCAATGTTCA
CAATCTTGCTCTGAAACGCTCTCGCTACCATTCCACATAACTCACCATCACAGCAAAAATGAGAC
AATCCAATACTTCTTCCCCTCACCCAATTCTTCCACTTAACTACTCCACCCACCTACCACTATCA
CTACACTTTAATGCCACTACTGCCTCCCTGCTTCCTGCTTTTCTCCCTGCTTCCTGCTTTTCTCC
CTCCTCCCTGCTTCTCTCGCACTCAATTCCACTCCCCGACACTGCCCGATCGGGCGAAAACCAAA
ACACCACCGCTAGATAAACAATTGTTCGCGACCATCTTCATCACGTCTGTCCCATGAGTTCTCCG
CTGAAGCTCCTGGCGCTCAAGTTCTTTGAGCAGATGGAGGAGCAG
Found at i:52257 original size:15 final size:15
Alignment explanation
Indices: 52237--52274 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
52227 CGTTCTTACA
*
52237 TCACCTCTACGCTCC
1 TCACCTCAACGCTCC
*
52252 TCACCTCAATGCTCC
1 TCACCTCAACGCTCC
52267 TCACCTCA
1 TCACCTCA
52275 CTATGCAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.50, G:0.05, T:0.26
Consensus pattern (15 bp):
TCACCTCAACGCTCC
Left flanking sequence: Indices 51737 -- 52236
CTTCGATCGACTGTACATAAATCCAACGGCGATCTGGATTGCACAGCTCAAGGAGGGGAACGACA
ATCAGCGCGTGACCATTGTCCCGAAAAAGCCCCTTTGCGGAGCCTTGACGCTAGCGCTAGCCTAA
GCACGTAATTAGCGGCAACCAGATGTCCATGTTCTGATAGTCCGATAGTAAGCGAGAGAAAAATA
AACATGCCCAAACAGGCGCATGGCATCTAAACAAAGAAACCTAGGCACGGCTAATCGTCCAGCGA
GACAACAATGAGAAAGGGACAAACATGAAAAGGGACAACCATGAAAGGGAAATAGAAAGGGTGGT
ACGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCGTGGTTCACAGAAGATG
GGATTGATACCCTCATTTTCTGTTCTCTTTCTCTCTTCTCTTTTCCCTTTTCTCTCTTCTCTCTT
CCCTTTTCTCTCTTCTCTTTTCTCTATCTGTCCCTCGTTCTTACA
Right flanking sequence: Indices 52275 -- 52774
CTATGCAACCCCATTGCAGCCACCTCAAACTGTCACGTTACCAAAACCACTACCGTCTGCTAGCA
ATGTTCACAATCTTGCTCTGAAACGCTCTCGCTACCATTCCACATAACTCACCATCACAGCAAAA
ATGAGACAATCCAATACTTCTTCCCCTCACCCAATTCTTCCACTTAACTACTCCACCCACCTACC
ACTATCACTACACTTTAATGCCACTACTGCCTCCCTGCTTCCTGCTTTTCTCCCTGCTTCCTGCT
TTTCTCCCTCCTCCCTGCTTCTCTCGCACTCAATTCCACTCCCCGACACTGCCCGATCGGGCGAA
AACCAAAACACCACCGCTAGATAAACAATTGTTCGCGACCATCTTCATCACGTCTGTCCCATGAG
TTCTCCGCTGAAGCTCCTGGCGCTCAAGTTCTTTGAGCAGATGGAGGAGCAGAACCTGCCGACAC
GGGCGCCGCTCGCACCGTCGTCACGCCACAACTTCAGCCCCACAA
Found at i:52524 original size:19 final size:19
Alignment explanation
Indices: 52500--52559 Score: 93
Period size: 19 Copynumber: 3.2 Consensus size: 19
52490 CCACTACTGC
52500 CTCCCTGCTTCCTGCTTTT
1 CTCCCTGCTTCCTGCTTTT
52519 CTCCCTGCTTCCTGCTTTT
1 CTCCCTGCTTCCTGCTTTT
* * *
52538 CTCCCTCCTCCCTGCTTCT
1 CTCCCTGCTTCCTGCTTTT
52557 CTC
1 CTC
52560 GCACTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.00, C:0.48, G:0.08, T:0.43
Consensus pattern (19 bp):
CTCCCTGCTTCCTGCTTTT
Left flanking sequence: Indices 52000 -- 52499
AACAATGAGAAAGGGACAAACATGAAAAGGGACAACCATGAAAGGGAAATAGAAAGGGTGGTACG
GCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCGTGGTTCACAGAAGATGGGA
TTGATACCCTCATTTTCTGTTCTCTTTCTCTCTTCTCTTTTCCCTTTTCTCTCTTCTCTCTTCCC
TTTTCTCTCTTCTCTTTTCTCTATCTGTCCCTCGTTCTTACATCACCTCTACGCTCCTCACCTCA
ATGCTCCTCACCTCACTATGCAACCCCATTGCAGCCACCTCAAACTGTCACGTTACCAAAACCAC
TACCGTCTGCTAGCAATGTTCACAATCTTGCTCTGAAACGCTCTCGCTACCATTCCACATAACTC
ACCATCACAGCAAAAATGAGACAATCCAATACTTCTTCCCCTCACCCAATTCTTCCACTTAACTA
CTCCACCCACCTACCACTATCACTACACTTTAATGCCACTACTGC
Right flanking sequence: Indices 52560 -- 53059
GCACTCAATTCCACTCCCCGACACTGCCCGATCGGGCGAAAACCAAAACACCACCGCTAGATAAA
CAATTGTTCGCGACCATCTTCATCACGTCTGTCCCATGAGTTCTCCGCTGAAGCTCCTGGCGCTC
AAGTTCTTTGAGCAGATGGAGGAGCAGAACCTGCCGACACGGGCGCCGCTCGCACCGTCGTCACG
CCACAACTTCAGCCCCACAAAAAAGCCCGCGGGCAACGAGGACTTGGACGCTCTCGCCAAGCAGT
TGGAAATCACCCCGGTGTCGCCACTGAAAACGCTGGCGTTGCGCTCGCGCTTCGAGCAGCCGCTG
GCCACGGTGTCGCTGTTCCGCCTGGCGGGCCTGCTGACGGCGCTGGTGCCAGGCCTGGCCCCCGA
GCTGCCCCGCAAGAAGCACGACCCGTTTGCCGACGAACAACCCGAGTGGGCCAACAAAAACTACA
AGGACATCCTCAACATGTCCCCCAAGAAGCTGCCGACGAAGCCCG
Found at i:53779 original size:27 final size:28
Alignment explanation
Indices: 53749--53815 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
53739 GGCGCCTGCG
*
53749 GAGGTGGTGTACCGT-GACCACGAGCCC
1 GAGGTGGTGTACCGTGGACCACCAGCCC
*
53776 GAGGTGGTGTA-CGTGGACCGCCAGCCC
1 GAGGTGGTGTACCGTGGACCACCAGCCC
53803 GAGGTGGTGTACC
1 GAGGTGGTGTACC
53816 TCGAGCGCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 3 0.08
27 32 0.89
28 1 0.03
ACGTcount: A:0.16, C:0.27, G:0.40, T:0.16
Consensus pattern (28 bp):
GAGGTGGTGTACCGTGGACCACCAGCCC
Left flanking sequence: Indices 53249 -- 53748
GGATCCAGGCGCTCAAGAACTGGTTGGAGACGGTGCTCCAGGAGACGATCCCGCAGCTGGCAGCC
GAGCTCATCCCGTACTTGCGCAACGGGATCCACTTGGCCAAGTTGGCCAACGTGGTGTTGCCGCT
GAAACGCGCGGTGTTCGCCAACGACCTGAAGCTCCAGTTCCGCCACACCGAGAACATCAACCGGT
TCTTCCAGTTGCTCGACTACATGAACGTGCCCGACCTCTTCCGGTTCGAGCTCACCGACTTGTAC
GACGCCAAGAACGTCCCCAAGGTGTGGTTCTGTCTCCACGCGCTCACCTACATGCTCAACCGGAT
GAACCCGGGGTACCCGAAGGCAGACAACCTCGTGGGCACCCTCGAGTTCTCCGACAGCGACGTGC
GGGCCGCCAACCGCGCGCTTGTGGGCGCCGGGTTGCCCAACTTTGCCAGCGCGGACTCGGACTCC
GATGACGACGACGACGAGTTTGTGGCGCCGCCGGTGGCGCCTGCG
Right flanking sequence: Indices 53816 -- 54315
TCGAGCGCGACGTGCTGCCGCGGCGGGTGATGGTGTCGCTGGCGATGCAGACGGACCCGGTGCAC
GGGGTGCTGCAGTACTGTGACATTGCGACGCTGACCGAGCTCAAGAGAACAGAGCTGGAGCTGGA
AACTCGTGACCCTAACTCTCATGATCTTGACACGTCTCATGTTGATCTTGACAACGCTCAGGATG
TTCTCGACAACCACTCTCAGGATACTCACACCCACCAGCCTCCCCCCTCTCTCCTGTCTCGCTAC
AAAGACGCAGACGACCTCGCGCTCGACGCGCTCGCGCCCCACATCGTCAAGCTCCAGGCTCTCGC
CCGCGGCGCCAACTTCCGCTACCGCTTCTTCGTCGACAAGATCATGCTCAAGCTGTTCACCGACG
AGATCGAGGAGCTCCAGCTGGTGGCCCGCGGGGTGTTGTCGCGCCGCCGCTCCGTGCACCGCCAC
CGCGCCCAGCTCCGCCACCTCCAGGGGTCCATCGTGGGCCTCCAG
Found at i:56045 original size:12 final size:12
Alignment explanation
Indices: 56028--56052 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56018 TGTTGGCGCG
56028 GGTGGACCAGGT
1 GGTGGACCAGGT
56040 GGTGGACCAGGT
1 GGTGGACCAGGT
56052 G
1 G
56053 CCCGTGCACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (12 bp):
GGTGGACCAGGT
Left flanking sequence: Indices 55528 -- 56027
TACGCCTCGGGCAGCATCGCCAAGGGGCTGCCGGCGGCGCACGAGGTGTTTGCCGCGGTGGTGGC
GCTCTTCCCGATCAAGGAGGCGCTGGTGTCCACCCACGGGCGCGAGGAGTACTTCTTTGTCAAGT
TGGTGGCAGCGCTCATGGAGCACGACATCCACACCCTGTGTGCGCAGGTGCTGGACATCACCAAG
CACCCCAACACCTGGTGGATCGACTACTTTGCCCACATCAACAACCACACCTACCAGCGCCACCA
CTTGAAGCAGATGTTCCACAAGTTTGTGCTGCTGGTGGTGGAGGCGGACCACCTCGACTTTGAGC
TGGACCCGGTGGCCATCCACCAGGGGCTTGTCGACCACGAGACCAAGGTGCACGGCCGGCTGGAG
CGCGCCACCACCGTGACTGCGGCCCAGGCCATCAAGGACCCCGAGGTGCTGGCGCGGTTTGTGGC
CAACTTGATGCTGTTGCGCGAGCTCGCCACCGTGTTGTTGGCGCG
Right flanking sequence: Indices 56053 -- 56552
CCCGTGCACGTCAAGTTGGTGTGCAAGCGGGTGTTCCAGTTGCTGCAGCTCCAGTTCCCGGACAA
GCTGAACCACCAGCACTTGGCGGTGGCCGGGGTGGTGTTCGCCAAGCACTACTTGGCGCTGTTGC
TCCAGGGCCCGGAGAACTTTGGCTACCTCATGCAAGACCCGTTCAACCCGCGGGTGGTGGGGGTG
CGCGCGCGGTCCAACTTGCGCCAGGTGGCCCGGGTGATGGTGCAGTTGTTCTCGATGAAGCCGTT
CTCCGACAACTACCTCAAGCCGCTCAACGACTACTTGGCCACCACCCACGCGCTGGTCAAGCTGG
TGATCAACCGGTTGATCGACGTCGACGAGATCGAGACCGCGTACGACATGACCGACTACGACGAC
ATCATCACCACCACCCGGCCCCAGCTCACCGTCGGGGTCACCACGATGATCGCGCTCGAAAAGCT
TGTGACGGAGCACTTGGACGTGGTGTGCCCGTCGCCCGACGACCA
Found at i:57620 original size:21 final size:19
Alignment explanation
Indices: 57595--57699 Score: 101
Period size: 18 Copynumber: 5.6 Consensus size: 19
57585 TATGAAAAGG
57595 GGGTAGGCCTGGGGGTACCTA
1 GGGTAGGCCT--GGGTACCTA
*
57616 GGGTAGGCCT-GTTACCTA
1 GGGTAGGCCTGGGTACCTA
* *
57634 GGGTAGGCCT-GATACCCA
1 GGGTAGGCCTGGGTACCTA
*
57652 GGGTAGGCCT-GATACCTA
1 GGGTAGGCCTGGGTACCTA
* *
57670 GGGTAGACCT-GGTACCCA
1 GGGTAGGCCTGGGTACCTA
*
57688 GGGTAGACCTGG
1 GGGTAGGCCTGG
57700 ACGTATACTA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
18 65 0.86
19 1 0.01
21 10 0.13
ACGTcount: A:0.19, C:0.23, G:0.38, T:0.20
Consensus pattern (19 bp):
GGGTAGGCCTGGGTACCTA
Left flanking sequence: Indices 57095 -- 57594
AGTTGGCCGACTACAACCGCCACGTCGAGCTGATCTTGCTCCACATGCAGCGGCTGCCCAAGGAC
CGCAAGTTGTTCAACATCATCCCGGTGTTTTCGAAGCAGTACTTCTACCACCGCGAGCTCCGCAA
GCGCAACCGGTTGCCCAAGTTTGGCTCGTACAAGTACCTGGCGAAGAAGTTGATGGACCAGGGGG
TGCTTCTCGACTACGGGCACCTCTCGTCGCTGAAGACCGACTTTATGTTTTCGTGCCACGAGGTG
GGCACCTTCACCGTGGAGGCGGCCACGGGGTCGGTGGCGATCCCGGGGGCGTTGCAGAAGGTGAC
GTTGGACGAGTTGCTCAACTTGCAGTACGAGCACGAGGAGAAGCTTGTGTTGTTTGACGGCATGG
CCACGTTCCACCTGGAGAGCTTGATTGCGATGATCTTCCGCAAGTTCTACGACATCAAGAAGGAT
TGATTTATACCCATTTTTATAGTCATATGCACATTTATGAAAAGG
Right flanking sequence: Indices 57700 -- 58199
ACGTATACTAGAATGGCTTTGTTGGTGAACGAGCTGACGGTAGTTGTGCTGTGCACTGGGTGGTC
CAAACGAACGGTTGGAGTAGATAGTGAGAAGACTCACTGGGTGTTGTGACACATTCCCATTCTAT
GGTAACGTCGATTGGTACATAATACAGAGATACAACTACTTCAACAACTGGTCGATCTTTTTCTC
CAACGCCGCGATGCGCTCGTCCTTCTCCGCCTGCGCCGCGGTGAGCTTGTGGATCTGTTCCTCAA
ACTGGACGGCAATCTGGGCAAGCTTCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGTG
TTGGTTTCGGGGGTCACCGGCGCGGGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCTT
GGCCGGCTTGAGCGAAGGCTTGCTCTCGGGCTTGGTCTCCTTGGGTTCAGCCTTGGTCTCGGGCT
TAAGCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCGGGCTTGG
Found at i:57633 original size:18 final size:18
Alignment explanation
Indices: 57610--57698 Score: 124
Period size: 18 Copynumber: 4.9 Consensus size: 18
57600 GGCCTGGGGG
*
57610 TACCTAGGGTAGGCCTGT
1 TACCTAGGGTAGGCCTGA
57628 TACCTAGGGTAGGCCTGA
1 TACCTAGGGTAGGCCTGA
*
57646 TACCCAGGGTAGGCCTGA
1 TACCTAGGGTAGGCCTGA
* *
57664 TACCTAGGGTAGACCTGG
1 TACCTAGGGTAGGCCTGA
* *
57682 TACCCAGGGTAGACCTG
1 TACCTAGGGTAGGCCTG
57699 GACGTATACT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (18 bp):
TACCTAGGGTAGGCCTGA
Left flanking sequence: Indices 57110 -- 57609
ACCGCCACGTCGAGCTGATCTTGCTCCACATGCAGCGGCTGCCCAAGGACCGCAAGTTGTTCAAC
ATCATCCCGGTGTTTTCGAAGCAGTACTTCTACCACCGCGAGCTCCGCAAGCGCAACCGGTTGCC
CAAGTTTGGCTCGTACAAGTACCTGGCGAAGAAGTTGATGGACCAGGGGGTGCTTCTCGACTACG
GGCACCTCTCGTCGCTGAAGACCGACTTTATGTTTTCGTGCCACGAGGTGGGCACCTTCACCGTG
GAGGCGGCCACGGGGTCGGTGGCGATCCCGGGGGCGTTGCAGAAGGTGACGTTGGACGAGTTGCT
CAACTTGCAGTACGAGCACGAGGAGAAGCTTGTGTTGTTTGACGGCATGGCCACGTTCCACCTGG
AGAGCTTGATTGCGATGATCTTCCGCAAGTTCTACGACATCAAGAAGGATTGATTTATACCCATT
TTTATAGTCATATGCACATTTATGAAAAGGGGGTAGGCCTGGGGG
Right flanking sequence: Indices 57699 -- 58198
GACGTATACTAGAATGGCTTTGTTGGTGAACGAGCTGACGGTAGTTGTGCTGTGCACTGGGTGGT
CCAAACGAACGGTTGGAGTAGATAGTGAGAAGACTCACTGGGTGTTGTGACACATTCCCATTCTA
TGGTAACGTCGATTGGTACATAATACAGAGATACAACTACTTCAACAACTGGTCGATCTTTTTCT
CCAACGCCGCGATGCGCTCGTCCTTCTCCGCCTGCGCCGCGGTGAGCTTGTGGATCTGTTCCTCA
AACTGGACGGCAATCTGGGCAAGCTTCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGT
GTTGGTTTCGGGGGTCACCGGCGCGGGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCT
TGGCCGGCTTGAGCGAAGGCTTGCTCTCGGGCTTGGTCTCCTTGGGTTCAGCCTTGGTCTCGGGC
TTAAGCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCGGGCTTG
Found at i:58150 original size:33 final size:33
Alignment explanation
Indices: 58108--58182 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
58098 TGAGCGAAGG
* * *
58108 CTTGCTCTCGGGCTT-GGTCTCCTTGGGTTCAGC
1 CTTGGTCTCGGGCTTAAG-CTCCTTGGGCTCAGC
* *
58141 CTTGGTCTCGGGCTTAAGCTCCTTGGGCTCGGG
1 CTTGGTCTCGGGCTTAAGCTCCTTGGGCTCAGC
58174 CTTGGTCTC
1 CTTGGTCTC
58183 CTTGGGCTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
33 35 0.97
34 1 0.03
ACGTcount: A:0.04, C:0.29, G:0.32, T:0.35
Consensus pattern (33 bp):
CTTGGTCTCGGGCTTAAGCTCCTTGGGCTCAGC
Left flanking sequence: Indices 57608 -- 58107
GGTACCTAGGGTAGGCCTGTTACCTAGGGTAGGCCTGATACCCAGGGTAGGCCTGATACCTAGGG
TAGACCTGGTACCCAGGGTAGACCTGGACGTATACTAGAATGGCTTTGTTGGTGAACGAGCTGAC
GGTAGTTGTGCTGTGCACTGGGTGGTCCAAACGAACGGTTGGAGTAGATAGTGAGAAGACTCACT
GGGTGTTGTGACACATTCCCATTCTATGGTAACGTCGATTGGTACATAATACAGAGATACAACTA
CTTCAACAACTGGTCGATCTTTTTCTCCAACGCCGCGATGCGCTCGTCCTTCTCCGCCTGCGCCG
CGGTGAGCTTGTGGATCTGTTCCTCAAACTGGACGGCAATCTGGGCAAGCTTCTCCACGGTGGCC
TTGAGGGTGGGGGCGTTGGCCTTGGTGTTGGTTTCGGGGGTCACCGGCGCGGGTTGCTCGTCCTT
GGTGGGCTCGGGTTTGGTTTCTTCCTTGGCCGGCTTGAGCGAAGG
Right flanking sequence: Indices 58183 -- 58682
CTTGGGCTCGGGCTTGGTCTCCTTGGGCTCAGGCTTAATCTCCTTCGACTCGGGCTTAGCCTCCT
TCTCATCCTTCTCCTCCTTCTTTTCTTCCTTTGCCTCCTTCTTCTGTACCACGTCCCAGCCGTCG
TTGTCGTCCACCTCGTCGTCAGAGCCGTCCTCAACCTTCTTGAGCATAGCGTCAACCTTGGACGA
CGACGTCAACGTGTCGTCAAGCTTGGGCGAGTCCTTCGTGGGCTCCTCCTTCTTGGGCTCCTCCT
TTTTAGGCTCCTCTTTCTTGGGCTCCTCCTTTTTGATCTCCTTGGGCTCCTCCTTCTTCGCCTCC
TTCTTCTGCGGCAGCGACGGCGCCAGCTCCTTCACCTTGGAAATGCTCACCGCAGGCGACGACGC
ACGCAACTCCGACGGCGCCTCGCCCTCAAACACCGCCTCCATGCTCATCAAAAGCGGGCCAGTGA
CCTCCTTGCCCGCAAACCACTCCTCAGCAGTGCACGCAGGGGTGC
Found at i:58249 original size:21 final size:21
Alignment explanation
Indices: 58140--58248 Score: 130
Period size: 21 Copynumber: 5.2 Consensus size: 21
58130 TTGGGTTCAG
*
58140 CCTTGGTCTCGGGCTTAAG-CT
1 CCTTGGGCTCGGGCTT-AGTCT
*
58161 CCTTGGGCTCGGGCTTGGTCT
1 CCTTGGGCTCGGGCTTAGTCT
*
58182 CCTTGGGCTCGGGCTTGGTCT
1 CCTTGGGCTCGGGCTTAGTCT
* *
58203 CCTTGGGCTCAGGCTTAATCT
1 CCTTGGGCTCGGGCTTAGTCT
* * *
58224 CCTTCGACTCGGGCTTAGCCT
1 CCTTGGGCTCGGGCTTAGTCT
58245 CCTT
1 CCTT
58249 CTCATCCTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
20 1 0.01
21 76 0.99
ACGTcount: A:0.06, C:0.31, G:0.29, T:0.33
Consensus pattern (21 bp):
CCTTGGGCTCGGGCTTAGTCT
Left flanking sequence: Indices 57640 -- 58139
GCCTGATACCCAGGGTAGGCCTGATACCTAGGGTAGACCTGGTACCCAGGGTAGACCTGGACGTA
TACTAGAATGGCTTTGTTGGTGAACGAGCTGACGGTAGTTGTGCTGTGCACTGGGTGGTCCAAAC
GAACGGTTGGAGTAGATAGTGAGAAGACTCACTGGGTGTTGTGACACATTCCCATTCTATGGTAA
CGTCGATTGGTACATAATACAGAGATACAACTACTTCAACAACTGGTCGATCTTTTTCTCCAACG
CCGCGATGCGCTCGTCCTTCTCCGCCTGCGCCGCGGTGAGCTTGTGGATCTGTTCCTCAAACTGG
ACGGCAATCTGGGCAAGCTTCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGTGTTGGT
TTCGGGGGTCACCGGCGCGGGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCTTGGCCG
GCTTGAGCGAAGGCTTGCTCTCGGGCTTGGTCTCCTTGGGTTCAG
Right flanking sequence: Indices 58249 -- 58748
CTCATCCTTCTCCTCCTTCTTTTCTTCCTTTGCCTCCTTCTTCTGTACCACGTCCCAGCCGTCGT
TGTCGTCCACCTCGTCGTCAGAGCCGTCCTCAACCTTCTTGAGCATAGCGTCAACCTTGGACGAC
GACGTCAACGTGTCGTCAAGCTTGGGCGAGTCCTTCGTGGGCTCCTCCTTCTTGGGCTCCTCCTT
TTTAGGCTCCTCTTTCTTGGGCTCCTCCTTTTTGATCTCCTTGGGCTCCTCCTTCTTCGCCTCCT
TCTTCTGCGGCAGCGACGGCGCCAGCTCCTTCACCTTGGAAATGCTCACCGCAGGCGACGACGCA
CGCAACTCCGACGGCGCCTCGCCCTCAAACACCGCCTCCATGCTCATCAAAAGCGGGCCAGTGAC
CTCCTTGCCCGCAAACCACTCCTCAGCAGTGCACGCAGGGGTGCCACTGGGACAGTCAGGGTAGA
TGTCGTCCTGGAACAACTCGGACTTGCGGGGCACAATAAACGAAA
Found at i:58427 original size:15 final size:15
Alignment explanation
Indices: 58409--58473 Score: 94
Period size: 15 Copynumber: 4.3 Consensus size: 15
58399 CTTGGGCGAG
*
58409 TCCTTCGTGGGCTCC
1 TCCTTCTTGGGCTCC
58424 TCCTTCTTGGGCTCC
1 TCCTTCTTGGGCTCC
* *
58439 TCCTTTTTAGGCTCC
1 TCCTTCTTGGGCTCC
*
58454 TCTTTCTTGGGCTCC
1 TCCTTCTTGGGCTCC
58469 TCCTT
1 TCCTT
58474 TTTGATCTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.02, C:0.37, G:0.18, T:0.43
Consensus pattern (15 bp):
TCCTTCTTGGGCTCC
Left flanking sequence: Indices 57909 -- 58408
GCTCGTCCTTCTCCGCCTGCGCCGCGGTGAGCTTGTGGATCTGTTCCTCAAACTGGACGGCAATC
TGGGCAAGCTTCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGTGTTGGTTTCGGGGGT
CACCGGCGCGGGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCTTGGCCGGCTTGAGCG
AAGGCTTGCTCTCGGGCTTGGTCTCCTTGGGTTCAGCCTTGGTCTCGGGCTTAAGCTCCTTGGGC
TCGGGCTTGGTCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCAGGCTTAATCTCCTTCGACTC
GGGCTTAGCCTCCTTCTCATCCTTCTCCTCCTTCTTTTCTTCCTTTGCCTCCTTCTTCTGTACCA
CGTCCCAGCCGTCGTTGTCGTCCACCTCGTCGTCAGAGCCGTCCTCAACCTTCTTGAGCATAGCG
TCAACCTTGGACGACGACGTCAACGTGTCGTCAAGCTTGGGCGAG
Right flanking sequence: Indices 58474 -- 58973
TTTGATCTCCTTGGGCTCCTCCTTCTTCGCCTCCTTCTTCTGCGGCAGCGACGGCGCCAGCTCCT
TCACCTTGGAAATGCTCACCGCAGGCGACGACGCACGCAACTCCGACGGCGCCTCGCCCTCAAAC
ACCGCCTCCATGCTCATCAAAAGCGGGCCAGTGACCTCCTTGCCCGCAAACCACTCCTCAGCAGT
GCACGCAGGGGTGCCACTGGGACAGTCAGGGTAGATGTCGTCCTGGAACAACTCGGACTTGCGGG
GCACAATAAACGAAATGGGCTCGATCACCGAGTCGCGGATCGTCTTGTACAGCTTCACCACCTCG
CACTCGCGCACGTTGCACGCGCTCTTGGGAGCCACCGCAAACCCGCGCTGGGGGTCGGTGGAGCC
GTACTGGGAGATCTCATGCAAAATGTCGTTGTCGTACTCGTAGTAGCGGATGTTGCCATCGCCCT
TGCCGGCAAGATACAAGATCAGGCACGCCTCATCGAAGTGGGGGA
Found at i:58483 original size:15 final size:15
Alignment explanation
Indices: 58419--58484 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
58409 TCCTTCGTGG
* *
58419 GCTCCTCCTTCTTGG
1 GCTCCTCCTTTTTGA
58434 GCTCCTCCTTTTT-A
1 GCTCCTCCTTTTTGA
*
58448 GGCTCCT-CTTTCTTGG
1 -GCTCCTCCTTT-TTGA
58464 GCTCCTCCTTTTTGA
1 GCTCCTCCTTTTTGA
*
58479 TCTCCT
1 GCTCCT
58485 TGGGCTCCTC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
14 4 0.10
15 34 0.81
16 4 0.10
ACGTcount: A:0.03, C:0.36, G:0.15, T:0.45
Consensus pattern (15 bp):
GCTCCTCCTTTTTGA
Left flanking sequence: Indices 57919 -- 58418
CTCCGCCTGCGCCGCGGTGAGCTTGTGGATCTGTTCCTCAAACTGGACGGCAATCTGGGCAAGCT
TCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGTGTTGGTTTCGGGGGTCACCGGCGCG
GGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCTTGGCCGGCTTGAGCGAAGGCTTGCT
CTCGGGCTTGGTCTCCTTGGGTTCAGCCTTGGTCTCGGGCTTAAGCTCCTTGGGCTCGGGCTTGG
TCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCAGGCTTAATCTCCTTCGACTCGGGCTTAGCC
TCCTTCTCATCCTTCTCCTCCTTCTTTTCTTCCTTTGCCTCCTTCTTCTGTACCACGTCCCAGCC
GTCGTTGTCGTCCACCTCGTCGTCAGAGCCGTCCTCAACCTTCTTGAGCATAGCGTCAACCTTGG
ACGACGACGTCAACGTGTCGTCAAGCTTGGGCGAGTCCTTCGTGG
Right flanking sequence: Indices 58485 -- 58984
TGGGCTCCTCCTTCTTCGCCTCCTTCTTCTGCGGCAGCGACGGCGCCAGCTCCTTCACCTTGGAA
ATGCTCACCGCAGGCGACGACGCACGCAACTCCGACGGCGCCTCGCCCTCAAACACCGCCTCCAT
GCTCATCAAAAGCGGGCCAGTGACCTCCTTGCCCGCAAACCACTCCTCAGCAGTGCACGCAGGGG
TGCCACTGGGACAGTCAGGGTAGATGTCGTCCTGGAACAACTCGGACTTGCGGGGCACAATAAAC
GAAATGGGCTCGATCACCGAGTCGCGGATCGTCTTGTACAGCTTCACCACCTCGCACTCGCGCAC
GTTGCACGCGCTCTTGGGAGCCACCGCAAACCCGCGCTGGGGGTCGGTGGAGCCGTACTGGGAGA
TCTCATGCAAAATGTCGTTGTCGTACTCGTAGTAGCGGATGTTGCCATCGCCCTTGCCGGCAAGA
TACAAGATCAGGCACGCCTCATCGAAGTGGGGGATGAGCACGCCG
Found at i:58484 original size:30 final size:30
Alignment explanation
Indices: 58418--58476 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
58408 GTCCTTCGTG
58418 GGCTCCTCCTTCTTGGGCTCCTCCTTTTTA
1 GGCTCCTCCTTCTTGGGCTCCTCCTTTTTA
*
58448 GGCTCCTCTTTCTTGGGCTCCTCCTTTTT
1 GGCTCCTCCTTCTTGGGCTCCTCCTTTTT
58477 GATCTCCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.02, C:0.36, G:0.17, T:0.46
Consensus pattern (30 bp):
GGCTCCTCCTTCTTGGGCTCCTCCTTTTTA
Left flanking sequence: Indices 57918 -- 58417
TCTCCGCCTGCGCCGCGGTGAGCTTGTGGATCTGTTCCTCAAACTGGACGGCAATCTGGGCAAGC
TTCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGTGTTGGTTTCGGGGGTCACCGGCGC
GGGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCTTGGCCGGCTTGAGCGAAGGCTTGC
TCTCGGGCTTGGTCTCCTTGGGTTCAGCCTTGGTCTCGGGCTTAAGCTCCTTGGGCTCGGGCTTG
GTCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCAGGCTTAATCTCCTTCGACTCGGGCTTAGC
CTCCTTCTCATCCTTCTCCTCCTTCTTTTCTTCCTTTGCCTCCTTCTTCTGTACCACGTCCCAGC
CGTCGTTGTCGTCCACCTCGTCGTCAGAGCCGTCCTCAACCTTCTTGAGCATAGCGTCAACCTTG
GACGACGACGTCAACGTGTCGTCAAGCTTGGGCGAGTCCTTCGTG
Right flanking sequence: Indices 58477 -- 58976
GATCTCCTTGGGCTCCTCCTTCTTCGCCTCCTTCTTCTGCGGCAGCGACGGCGCCAGCTCCTTCA
CCTTGGAAATGCTCACCGCAGGCGACGACGCACGCAACTCCGACGGCGCCTCGCCCTCAAACACC
GCCTCCATGCTCATCAAAAGCGGGCCAGTGACCTCCTTGCCCGCAAACCACTCCTCAGCAGTGCA
CGCAGGGGTGCCACTGGGACAGTCAGGGTAGATGTCGTCCTGGAACAACTCGGACTTGCGGGGCA
CAATAAACGAAATGGGCTCGATCACCGAGTCGCGGATCGTCTTGTACAGCTTCACCACCTCGCAC
TCGCGCACGTTGCACGCGCTCTTGGGAGCCACCGCAAACCCGCGCTGGGGGTCGGTGGAGCCGTA
CTGGGAGATCTCATGCAAAATGTCGTTGTCGTACTCGTAGTAGCGGATGTTGCCATCGCCCTTGC
CGGCAAGATACAAGATCAGGCACGCCTCATCGAAGTGGGGGATGA
Found at i:58507 original size:24 final size:24
Alignment explanation
Indices: 58459--58509 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
58449 GCTCCTCTTT
* *
58459 CTTGGGCTCCTCCTTTTTGATCTC
1 CTTGGGCTCCTCCTTTTCGACCTC
58483 CTTGGGCTCCTCCTTCTTCG-CCTC
1 CTTGGGCTCCTCCTT-TTCGACCTC
58507 CTT
1 CTT
58510 CTTCTGCGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.02, C:0.39, G:0.16, T:0.43
Consensus pattern (24 bp):
CTTGGGCTCCTCCTTTTCGACCTC
Left flanking sequence: Indices 57959 -- 58458
AACTGGACGGCAATCTGGGCAAGCTTCTCCACGGTGGCCTTGAGGGTGGGGGCGTTGGCCTTGGT
GTTGGTTTCGGGGGTCACCGGCGCGGGTTGCTCGTCCTTGGTGGGCTCGGGTTTGGTTTCTTCCT
TGGCCGGCTTGAGCGAAGGCTTGCTCTCGGGCTTGGTCTCCTTGGGTTCAGCCTTGGTCTCGGGC
TTAAGCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCGGGCTTGGTCTCCTTGGGCTCAGGCTT
AATCTCCTTCGACTCGGGCTTAGCCTCCTTCTCATCCTTCTCCTCCTTCTTTTCTTCCTTTGCCT
CCTTCTTCTGTACCACGTCCCAGCCGTCGTTGTCGTCCACCTCGTCGTCAGAGCCGTCCTCAACC
TTCTTGAGCATAGCGTCAACCTTGGACGACGACGTCAACGTGTCGTCAAGCTTGGGCGAGTCCTT
CGTGGGCTCCTCCTTCTTGGGCTCCTCCTTTTTAGGCTCCTCTTT
Right flanking sequence: Indices 58510 -- 59009
CTTCTGCGGCAGCGACGGCGCCAGCTCCTTCACCTTGGAAATGCTCACCGCAGGCGACGACGCAC
GCAACTCCGACGGCGCCTCGCCCTCAAACACCGCCTCCATGCTCATCAAAAGCGGGCCAGTGACC
TCCTTGCCCGCAAACCACTCCTCAGCAGTGCACGCAGGGGTGCCACTGGGACAGTCAGGGTAGAT
GTCGTCCTGGAACAACTCGGACTTGCGGGGCACAATAAACGAAATGGGCTCGATCACCGAGTCGC
GGATCGTCTTGTACAGCTTCACCACCTCGCACTCGCGCACGTTGCACGCGCTCTTGGGAGCCACC
GCAAACCCGCGCTGGGGGTCGGTGGAGCCGTACTGGGAGATCTCATGCAAAATGTCGTTGTCGTA
CTCGTAGTAGCGGATGTTGCCATCGCCCTTGCCGGCAAGATACAAGATCAGGCACGCCTCATCGA
AGTGGGGGATGAGCACGCCGGACGAGGCGTCGATCACGGTGAACC
Found at i:68428 original size:14 final size:14
Alignment explanation
Indices: 68409--68435 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68399 CTTTCCTTCC
68409 TCTTTCCCCACCCT
1 TCTTTCCCCACCCT
68423 TCTTTCCCCACCC
1 TCTTTCCCCACCC
68436 AACAGGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.59, G:0.00, T:0.33
Consensus pattern (14 bp):
TCTTTCCCCACCCT
Left flanking sequence: Indices 67909 -- 68408
GCGGTTGGGGTACAAGGACAACCGGTTGCCCATTGCGTTGCGCGAGGTGCCCTACATTTTGGAGG
AGGTGTTCCGTGGCAAGTCCCCCGTGCTGGGGTTCCTGACGCGGTTGGCGCTCACCCGGTGGGAC
CCGCAGCACGACTTGTCGTTCCAGAACATTGTCGTCATGACGAAGGACGAGGTCAAGAAGCACGA
GGATGAGGTGTTGCTTGGGGGCAAGTCGTTGGAGGAGGTGTACCCGCAGCCCGTGCTTGACGCCG
TGGCCAAGCGGTTCGCCGAGGAGCGCTACTACTCCCAGTTTAAATAATTGCATGAATACCACGTC
TAGCCGCACGGCTAAGCGAGATCTTCCGATCGCAATGCGACGTAGGCTCCACACGGGGTTGAGTT
TTTTTACATTTGCCACCATGATCTGATCTCTAACATTTCTGTTATTGTAGATTTCACCCTTCTCT
ATCACCCCCTGCTTCACTTCCCCTCCCTACGCCCCCTTTCCTTCC
Right flanking sequence: Indices 68436 -- 68935
AACAGGATTTCTTTTACCCTGTCTGTCGGTGACTCTGCACGTGACTCGCGCTGGCTACCGCTGCA
TGTAATGGAACCGTTATCTGTGGCAAAGAGCAACCCCAAATCAGCCATGTGCTCGAACCCGATCC
TATGGCTACCGCAGCTCGTGGTTCTGATATTCATCACCGCCCACGAGACCGGGAAAACCTCCCGC
AAACCCGAGGGCAAGTGCGAGTTGGTGGGGACATTCTCGTTGATCACCCAGGCGCTCTTGGGGTT
GCTATGCTTATCGCTGTTGATCGTGAAGCGGTACTACGAGTATCCGGTGCGCCGGACATGGAAGG
TGTGGATGTTTGATGTGCTGAAGCAATTGGTGGGGGCGTTTGGTGTGCACGTTTTCAATGTGATT
TTGCTGACGGTCAAGTCGAAGGACGGGGACGATGTGGCGTGGGGTTCGGGCCTGTTTGAGGACGA
GCCCGTGGACGACGATCCCTGCGACTGGTACTTCTTGCTGATTGT
Found at i:75656 original size:9 final size:9
Alignment explanation
Indices: 75642--75693 Score: 77
Period size: 9 Copynumber: 5.8 Consensus size: 9
75632 CCTTGTGCAG
75642 CTTCTTGTC
1 CTTCTTGTC
*
75651 CTTCTTCTC
1 CTTCTTGTC
*
75660 CTTCTTCTC
1 CTTCTTGTC
75669 CTTCTTGTC
1 CTTCTTGTC
*
75678 CTTCTTTTC
1 CTTCTTGTC
75687 CTTCTTG
1 CTTCTTG
75694 GGCGACGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.00, C:0.37, G:0.06, T:0.58
Consensus pattern (9 bp):
CTTCTTGTC
Left flanking sequence: Indices 75142 -- 75641
ATGAGAGAAACGAGCCGAGTAGGTAAGAGCGAAGAGTCTACGCAATGACCATTTTGGGTTGGTTG
AAGACCTGGTAGAGCGAACAGACAAACTTACAGGTTGTAACTGTAGACGAGCTGATTGAGCTGGC
AAGACAGAATAAGTGAACACACCGATTGGGGCTTCTGACAGCCTGGTAGCTTCAACGAAATGGTC
TCATTGATAAACTGGTTTCCTTAACAGGCTAGCTTCCACAGACTGTTTTCCTTAACAGACTGGAT
GAGTAAACAAATGGTATGCTTTGACGGATTGGATGGTCTGACAGATAAAAGAATTGGATAGTCTG
GTTGTTCTGACAGACTGGCTGACCAGAACCGGCTGACCGAACGGACCAACCATACGTGTAGACCC
GCGACCAAGCCTGAATACGATGCCTGTGGCAATTTAGCGTCCCCGAAGGGTTATGTACATTAGTA
GGGGGCAAACCGCTTGTCCTTTTTGTGCTTTTTGTCCTTGTGCAG
Right flanking sequence: Indices 75694 -- 76193
GGCGACGGTACGGGCGACGGCACCAGCACCGAGCCAACAAAGTTGTACCGGTGGAGCTCGAACGG
CAACTCCCACGTCTTGATGCGCCCATCCTCGCCACAGGTGATGGTGGTCTTGGATCCAGGGACCA
CAAGCAAGTCCCGGACCACGTCTTCCCCGTGCGCTTCGGGGAACCACACGGGTTTCTCCTCGTCA
AACTGCTCGGTAGCCGGGTTGAACGGGAGCAACGTGAGCTTCAGCTGGGTGTTGGCTCCATACAG
CACATACCCCAGGGGCAGCAAATCCACCACGTACTCGCAGTCGGGCCACCGCAGACGCACGTCGC
CCATCTCGTTGGGCGGAGCCTCGCCCCCTTGCTCGTAGTTGGTGTCATTCAAGTCAAAGAACCCA
AGGGTCTCCATGTGCGAGAGCACCGCCACCCGACGCTCAAGCGTCCACTGGCACAGGTGCACCAG
GGCAAACTGGATCACCTGGTGCAACAGCTCGTCCTCGTCGGCCTC
Found at i:75661 original size:27 final size:27
Alignment explanation
Indices: 75631--75691 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
75621 GTGCTTTTTG
* *
75631 TCCTTGTGCAGCTTCTTGTCCTTCTTC
1 TCCTTCTGCACCTTCTTGTCCTTCTTC
* * *
75658 TCCTTCTTCTCCTTCTTGTCCTTCTTT
1 TCCTTCTGCACCTTCTTGTCCTTCTTC
75685 TCCTTCT
1 TCCTTCT
75692 TGGGCGACGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.02, C:0.36, G:0.08, T:0.54
Consensus pattern (27 bp):
TCCTTCTGCACCTTCTTGTCCTTCTTC
Left flanking sequence: Indices 75131 -- 75630
ATACACAATAAATGAGAGAAACGAGCCGAGTAGGTAAGAGCGAAGAGTCTACGCAATGACCATTT
TGGGTTGGTTGAAGACCTGGTAGAGCGAACAGACAAACTTACAGGTTGTAACTGTAGACGAGCTG
ATTGAGCTGGCAAGACAGAATAAGTGAACACACCGATTGGGGCTTCTGACAGCCTGGTAGCTTCA
ACGAAATGGTCTCATTGATAAACTGGTTTCCTTAACAGGCTAGCTTCCACAGACTGTTTTCCTTA
ACAGACTGGATGAGTAAACAAATGGTATGCTTTGACGGATTGGATGGTCTGACAGATAAAAGAAT
TGGATAGTCTGGTTGTTCTGACAGACTGGCTGACCAGAACCGGCTGACCGAACGGACCAACCATA
CGTGTAGACCCGCGACCAAGCCTGAATACGATGCCTGTGGCAATTTAGCGTCCCCGAAGGGTTAT
GTACATTAGTAGGGGGCAAACCGCTTGTCCTTTTTGTGCTTTTTG
Right flanking sequence: Indices 75692 -- 76191
TGGGCGACGGTACGGGCGACGGCACCAGCACCGAGCCAACAAAGTTGTACCGGTGGAGCTCGAAC
GGCAACTCCCACGTCTTGATGCGCCCATCCTCGCCACAGGTGATGGTGGTCTTGGATCCAGGGAC
CACAAGCAAGTCCCGGACCACGTCTTCCCCGTGCGCTTCGGGGAACCACACGGGTTTCTCCTCGT
CAAACTGCTCGGTAGCCGGGTTGAACGGGAGCAACGTGAGCTTCAGCTGGGTGTTGGCTCCATAC
AGCACATACCCCAGGGGCAGCAAATCCACCACGTACTCGCAGTCGGGCCACCGCAGACGCACGTC
GCCCATCTCGTTGGGCGGAGCCTCGCCCCCTTGCTCGTAGTTGGTGTCATTCAAGTCAAAGAACC
CAAGGGTCTCCATGTGCGAGAGCACCGCCACCCGACGCTCAAGCGTCCACTGGCACAGGTGCACC
AGGGCAAACTGGATCACCTGGTGCAACAGCTCGTCCTCGTCGGCC
Found at i:77191 original size:9 final size:9
Alignment explanation
Indices: 77177--77201 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77167 AACGCTTACT
77177 GCTGCTGGG
1 GCTGCTGGG
77186 GCTGCTGGG
1 GCTGCTGGG
77195 GCTGCTG
1 GCTGCTG
77202 CTGCTGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.24, G:0.52, T:0.24
Consensus pattern (9 bp):
GCTGCTGGG
Left flanking sequence: Indices 76677 -- 77176
GTCCTGCTCGCCCACCTGCCAAGCGCCGTTGTTGACTGCCCTCATTGATGTTGTCGGCATCGAAA
AAGACACTCGTGCAGCAATGGGTCGGGGACGGGGGAGGGGGATGTGGATTTCGTAGAGGAGCAGA
GAACAGAGGATGGTTTGAAGTGAGAGGGACACAGTGGTATCGCTACCATTTTGAGTTTGATTCTG
AAATTAGCGGTGCTTTTAGAGTGTTGCGTATTTACGAGCCATAGGATATACGTGGATCGAGTGTG
AAGAGAACAACTGGGTGGCTGGGACCTCACCATCACATGCCAGCTATTGGGACCACCACCAAAAA
TCTTTAAAACAGGTTTCTACCTACACTGTTCTTTCTCATACCATTTATTTCCGAGGCTCGCTTGT
GCCGCATATGGCTGCAAACGAGCGTTTATTGAACATACAAATAGGTCACAAATCAATTTTCAACA
ATGATGTGAACCGAAGAAAAACAGCCATCAAATCAAACGCTTACT
Right flanking sequence: Indices 77202 -- 77701
CTGCTGCTGCTGCTGGCCCTGCTGCTGGGCGACCTGCAGGGGAGTACGGAGGATGTTGTTGACGA
TGTTGCCCAAGCCGAAAGAGTTGAGCAAGCCACCGACGAGACCCTGGCCCTGACCGTAGGGCTGG
CCGTACTGCTGGCCCTGGCCACCGAGGATGCTGCCGAACAAGTTACCGAGGCCCAAGCCACCCTG
CTGGTAGGGCTGGTACTGACCCTGCTGACCCTGCTGCTGGCCGTACTGCTGGCCGTATTGCTGGC
CCTGGCCACCGAGGACACCACCGAGCAAACCGTCGATCAAACCGTTGGAAGCATCCTCGGGGATG
GCGTTGGCGGCGTCAGAGGGGGAGGCCTCAGCGGGAGCGGCAGCGGTGGGGGTAGCCTCCTCAGG
GACGGGGGCGGCGGAGACGGCGGTGGCCAAGAGGGCAATAGCGATGTTTCTGAACTGCATTGTTA
ACGAGAGTAGTGGGTTGAAGTTAATGGACGAGGGGGGACGGTTAT
Found at i:77192 original size:12 final size:12
Alignment explanation
Indices: 77175--77230 Score: 55
Period size: 12 Copynumber: 4.9 Consensus size: 12
77165 CAAACGCTTA
77175 CTGCTGCT-GGG
1 CTGCTGCTGGGG
77186 --GCTGCTGGGG
1 CTGCTGCTGGGG
**
77196 CTGCTGCTGCTG
1 CTGCTGCTGGGG
**
77208 CTGCTGCTGGCC
1 CTGCTGCTGGGG
77220 CTGCTGCTGGG
1 CTGCTGCTGGG
77231 CGACCTGCAG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
9 6 0.17
10 3 0.08
12 27 0.75
ACGTcount: A:0.00, C:0.30, G:0.43, T:0.27
Consensus pattern (12 bp):
CTGCTGCTGGGG
Left flanking sequence: Indices 76675 -- 77174
TTGTCCTGCTCGCCCACCTGCCAAGCGCCGTTGTTGACTGCCCTCATTGATGTTGTCGGCATCGA
AAAAGACACTCGTGCAGCAATGGGTCGGGGACGGGGGAGGGGGATGTGGATTTCGTAGAGGAGCA
GAGAACAGAGGATGGTTTGAAGTGAGAGGGACACAGTGGTATCGCTACCATTTTGAGTTTGATTC
TGAAATTAGCGGTGCTTTTAGAGTGTTGCGTATTTACGAGCCATAGGATATACGTGGATCGAGTG
TGAAGAGAACAACTGGGTGGCTGGGACCTCACCATCACATGCCAGCTATTGGGACCACCACCAAA
AATCTTTAAAACAGGTTTCTACCTACACTGTTCTTTCTCATACCATTTATTTCCGAGGCTCGCTT
GTGCCGCATATGGCTGCAAACGAGCGTTTATTGAACATACAAATAGGTCACAAATCAATTTTCAA
CAATGATGTGAACCGAAGAAAAACAGCCATCAAATCAAACGCTTA
Right flanking sequence: Indices 77231 -- 77730
CGACCTGCAGGGGAGTACGGAGGATGTTGTTGACGATGTTGCCCAAGCCGAAAGAGTTGAGCAAG
CCACCGACGAGACCCTGGCCCTGACCGTAGGGCTGGCCGTACTGCTGGCCCTGGCCACCGAGGAT
GCTGCCGAACAAGTTACCGAGGCCCAAGCCACCCTGCTGGTAGGGCTGGTACTGACCCTGCTGAC
CCTGCTGCTGGCCGTACTGCTGGCCGTATTGCTGGCCCTGGCCACCGAGGACACCACCGAGCAAA
CCGTCGATCAAACCGTTGGAAGCATCCTCGGGGATGGCGTTGGCGGCGTCAGAGGGGGAGGCCTC
AGCGGGAGCGGCAGCGGTGGGGGTAGCCTCCTCAGGGACGGGGGCGGCGGAGACGGCGGTGGCCA
AGAGGGCAATAGCGATGTTTCTGAACTGCATTGTTAACGAGAGTAGTGGGTTGAAGTTAATGGAC
GAGGGGGGACGGTTATTTATACAATTTCGTTGGTGCAACACGTTG
Found at i:77445 original size:12 final size:12
Alignment explanation
Indices: 77430--77462 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
77420 GCTGACCCTG
77430 CTGCTGGCCGTA
1 CTGCTGGCCGTA
77442 CTGCTGGCCGTA
1 CTGCTGGCCGTA
*
77454 TTGCTGGCC
1 CTGCTGGCC
77463 CTGGCCACCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.33, G:0.33, T:0.27
Consensus pattern (12 bp):
CTGCTGGCCGTA
Left flanking sequence: Indices 76930 -- 77429
GAGTGTGAAGAGAACAACTGGGTGGCTGGGACCTCACCATCACATGCCAGCTATTGGGACCACCA
CCAAAAATCTTTAAAACAGGTTTCTACCTACACTGTTCTTTCTCATACCATTTATTTCCGAGGCT
CGCTTGTGCCGCATATGGCTGCAAACGAGCGTTTATTGAACATACAAATAGGTCACAAATCAATT
TTCAACAATGATGTGAACCGAAGAAAAACAGCCATCAAATCAAACGCTTACTGCTGCTGGGGCTG
CTGGGGCTGCTGCTGCTGCTGCTGCTGGCCCTGCTGCTGGGCGACCTGCAGGGGAGTACGGAGGA
TGTTGTTGACGATGTTGCCCAAGCCGAAAGAGTTGAGCAAGCCACCGACGAGACCCTGGCCCTGA
CCGTAGGGCTGGCCGTACTGCTGGCCCTGGCCACCGAGGATGCTGCCGAACAAGTTACCGAGGCC
CAAGCCACCCTGCTGGTAGGGCTGGTACTGACCCTGCTGACCCTG
Right flanking sequence: Indices 77463 -- 77962
CTGGCCACCGAGGACACCACCGAGCAAACCGTCGATCAAACCGTTGGAAGCATCCTCGGGGATGG
CGTTGGCGGCGTCAGAGGGGGAGGCCTCAGCGGGAGCGGCAGCGGTGGGGGTAGCCTCCTCAGGG
ACGGGGGCGGCGGAGACGGCGGTGGCCAAGAGGGCAATAGCGATGTTTCTGAACTGCATTGTTAA
CGAGAGTAGTGGGTTGAAGTTAATGGACGAGGGGGGACGGTTATTTATACAATTTCGTTGGTGCA
ACACGTTGCCCTGGGCTTGGACGTGCTTGTGGCACTGAATTAAGGTTCTGGTCACTAACACGCGG
AATGTGAAACAGGGTTTAGTTCGCTAAAAGCTCTATAACCGACCGGATCAACCTGACGCAGGGAC
AACGGTGATCACGGAAAATTTGAGGTGGAAGACCAGAACACCCACCCGTAGCCAAAGTTTCTACA
ATGTCTGTTTCTTCTATTTTTTGATTCGTCATTTTCAGCTCTGTT
Found at i:84322 original size:9 final size:9
Alignment explanation
Indices: 84308--84334 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
84298 TGCGTTAAGA
84308 GGCATTTAG
1 GGCATTTAG
84317 GGCATTTAG
1 GGCATTTAG
84326 GGCATTTAG
1 GGCATTTAG
84335 TAGTGGTGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.33, T:0.33
Consensus pattern (9 bp):
GGCATTTAG
Left flanking sequence: Indices 83808 -- 84307
CAAGATCCACTTTGGCATGGACCACGTCAAGCAGTTCCCCAAGGACAAGGCCCACATCCAGGTGG
TGCGCCAGTTGGTGCAGCAGCGGCAGCGGATCTTGAAGTACCTCAAGCGCGACGACCCCGAGCGG
TACTACCACACCATCGCCAAGCTTGGGTTGGCGGACGACTGTATCACCAAGGAGTTCAACATGGG
TCGCCAGTACATGGAGGACTTCAAGGTGTGGGGTGACAAGAAGCTCGTCAAGTTGTCGGACAAGC
AGCAGGCCAAGGCCGACAAGTTGGTCGAGTTGCAGAAGCGGGTCGAGGGCTACAACCAGCTCGCC
AAGGTCAACCACGAGATTCTTCAGGGCAAGCGTCCGGCGCCTTACAAGTTTAAGAACATGCGCAG
ATAATCATTGTATATAGTAATGGCACAATCAAGGAGGTATTAGGTTGGAGGTGTGAGATGGGTAG
TAGAGGGTGAGACGGGGTAGTGGAAGACTGAATCTTGCGTTAAGA
Right flanking sequence: Indices 84335 -- 84834
TAGTGGTGCGGGGAAGGTGTGCTAGATCGTAGAACAATTGGGAGTGAGACATGGTGGTGGAAAAT
CAGTAAAGTGTTTCTTTGAAGACGATAGAAGTGTTCCTTTTATGTGTATTAGACTAGTCAAACCA
CCAGAAGGGCTTTCAGACATGCAATTGGTGTATTTCTGAAGCAATGCTTCCACTCTCATTCCTCA
CCAGTTTTCGCAACAGTCGTCACTGACCACTCTGCCATATGCAACCAATATTCAGCGACAACCTC
AACAAACAACCTAATAAACCAACCCACACAACACAATTGCCGCCACAACCGAGTCACACCACCAC
CTAATCCCCGCCGACCCTACCCCTCCACCCTTTCCCTTCCTTCAACCCACTCCTGCACATAACCA
ATTGTTCGCCACTCACTTGACACTGAGACCAACCAACAGAACCACCCTGCCGCGACCATGCCACC
GAATCCGGACTGGGACAAGTACGTGGCTCCGACCGACGACGATGA
Found at i:86305 original size:16 final size:14
Alignment explanation
Indices: 86269--86298 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86259 ATGGTACCGT
86269 ACTGATACATTGAC
1 ACTGATACATTGAC
*
86283 ACTGATACGTTGAC
1 ACTGATACATTGAC
86297 AC
1 AC
86299 ACTGATAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (14 bp):
ACTGATACATTGAC
Left flanking sequence: Indices 85769 -- 86268
ATCAAGGTGATGTTTGCCACCAACAGACCCAACACCTTGGACCCGGCGTTGTTACGTCCGGGCCG
TATCGACCGTAAGGTCGAGTTCTCGTTGCCCGACCTCGAAGGCCGGGCCAACATTTTCCGCATCC
ACTCCAAGACCATGTCGGTGGAGAAGGGCATCCGCTGGGAGTTGATCTCGCGGTTGTGTCCCAAC
GCCACCGGTGCCGAGTTGCGCTCGGTGTGCACGGAGGCCGGGATGTTTGCCATCCGGGCCCGTAG
AAAGGTGGCCAACGAGAAGGATTTCTTGAAGGCGGTTGACAAGGTGATCAAGGGCAACTTGAAGT
TCAGCTCCACCTCGGAGTACATGCAGTATAACTAGGTACGAATACAGAATGTAATAGAGTCGGGT
GGTAGGATGGGCACTGGCCACTGATACTGGACTGGTGGAAATAGCGGCAGTGAAACACTGTGGTT
GGTGTTTACCAGAATCAAACAGGTGGAACCGGTGAATGGTACCGT
Right flanking sequence: Indices 86299 -- 86798
ACTGATAAACTGAAACACTGATACACTGACATACTGGTGAAATGGTAAAATGATAAATGGTCTAC
CCCTATACACTGACACGCAGACATGCTGATACACTGGACTGGTACCCTACTACACAAGTTCTAAC
AGTGAATCTGTTCCAAATAACTCTACTCGTGTCTTTGGCCCACTCCATACTACACTTAGCTGTGA
ACATTATATTCGTATGTGCTGGTCTATGAAAGTCTGGTCTGTGCATATATAGAAGGCGGCCCAGG
CGACCCGACCACGACCCGGGCGTGCCAGGCAGGCTACTCCCACCAGGAGACGCAGCCCATGCCCT
CGGTCTGCATGGAGCCAATCAAAACATAGGGTCGTGGTCTGTTTTCAATCTCCTCCTCCGTCTCG
TATCCGCTCTTGGGCTTGATGTTGGCAAACACCTCCTCCTCTAGCCGGAACCGGACCTTTTCGTT
GATATCAATAAACAACTCCAGCTCGTCGTCAGGACGCCACACCCA
Found at i:86334 original size:16 final size:16
Alignment explanation
Indices: 86269--86334 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
86259 ATGGTACCGT
*
86269 ACTGATACATTG--AC
1 ACTGATACACTGACAC
**
86283 ACTGATACGTTGACAC
1 ACTGATACACTGACAC
* *
86299 ACTGATAAACTGAAAC
1 ACTGATACACTGACAC
*
86315 ACTGATACACTGACAT
1 ACTGATACACTGACAC
86331 ACTG
1 ACTG
86335 GTGAAATGGT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 11 0.26
16 31 0.74
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (16 bp):
ACTGATACACTGACAC
Left flanking sequence: Indices 85769 -- 86268
ATCAAGGTGATGTTTGCCACCAACAGACCCAACACCTTGGACCCGGCGTTGTTACGTCCGGGCCG
TATCGACCGTAAGGTCGAGTTCTCGTTGCCCGACCTCGAAGGCCGGGCCAACATTTTCCGCATCC
ACTCCAAGACCATGTCGGTGGAGAAGGGCATCCGCTGGGAGTTGATCTCGCGGTTGTGTCCCAAC
GCCACCGGTGCCGAGTTGCGCTCGGTGTGCACGGAGGCCGGGATGTTTGCCATCCGGGCCCGTAG
AAAGGTGGCCAACGAGAAGGATTTCTTGAAGGCGGTTGACAAGGTGATCAAGGGCAACTTGAAGT
TCAGCTCCACCTCGGAGTACATGCAGTATAACTAGGTACGAATACAGAATGTAATAGAGTCGGGT
GGTAGGATGGGCACTGGCCACTGATACTGGACTGGTGGAAATAGCGGCAGTGAAACACTGTGGTT
GGTGTTTACCAGAATCAAACAGGTGGAACCGGTGAATGGTACCGT
Right flanking sequence: Indices 86335 -- 86834
GTGAAATGGTAAAATGATAAATGGTCTACCCCTATACACTGACACGCAGACATGCTGATACACTG
GACTGGTACCCTACTACACAAGTTCTAACAGTGAATCTGTTCCAAATAACTCTACTCGTGTCTTT
GGCCCACTCCATACTACACTTAGCTGTGAACATTATATTCGTATGTGCTGGTCTATGAAAGTCTG
GTCTGTGCATATATAGAAGGCGGCCCAGGCGACCCGACCACGACCCGGGCGTGCCAGGCAGGCTA
CTCCCACCAGGAGACGCAGCCCATGCCCTCGGTCTGCATGGAGCCAATCAAAACATAGGGTCGTG
GTCTGTTTTCAATCTCCTCCTCCGTCTCGTATCCGCTCTTGGGCTTGATGTTGGCAAACACCTCC
TCCTCTAGCCGGAACCGGACCTTTTCGTTGATATCAATAAACAACTCCAGCTCGTCGTCAGGACG
CCACACCCACGCCTTGTCGGTCTCTTTGTACTCGCAGTTCTCGAA
Found at i:91745 original size:16 final size:16
Alignment explanation
Indices: 91724--91798 Score: 125
Period size: 16 Copynumber: 4.7 Consensus size: 16
91714 ACAACTGGAT
*
91724 CAACCACCTAT-TCATC
1 CAACCACCT-TCTCACC
91740 CAACCACCTTCTCACC
1 CAACCACCTTCTCACC
91756 CAACCACCTTCTCACC
1 CAACCACCTTCTCACC
91772 CAACCACCTTCTCACC
1 CAACCACCTTCTCACC
91788 CAACCACCTTC
1 CAACCACCTTC
91799 AACGCCTCAC
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
15 1 0.02
16 56 0.98
ACGTcount: A:0.27, C:0.53, G:0.00, T:0.20
Consensus pattern (16 bp):
CAACCACCTTCTCACC
Left flanking sequence: Indices 91224 -- 91723
GCCCACCCGGGGCACCCCGGGACGCGGAATCAACGTGGGCACGTTTTCTTTGCCAAGGGGGAACT
TGGGCACCCGGTCAGAAAGCTTGTTGGTCTGCACCAGCTCGCCCGGGATGTGCTGCTTGATCTGC
TTCCACTCGCCGGCCGAGGGGAGATCCTTGCGGGGCTGCGAGCTCTGGGGAAGGTTGGACGAGTT
GTAGCGGACAAAGAGCCGGGGTGACACCACGCGGGCACCCGGAGCTCGAGCTATACCGAGCCTCA
ACATCGTCTGTAGCTTGGTCTCGGTTGGTCTGATCTTTGAAATTTCGCGCTGAGCCGCACGCCAA
AGGCCGACGGATAACGCCATGAAAGATGGGGAGGAACTCCAGGTGTAAAAGATGAAGGTTGGAGG
TAGTGATCTTCTAACAACACCACTACACTTTCATAGCATCTTTTCTCGTATCAAAACCACCATGT
CCAACCACCTATTATAGGTGAAACAACCATCATTTACAACTGGAT
Right flanking sequence: Indices 91799 -- 92298
AACGCCTCACCCATCAACCTTTCTCATATCTAATATCATACATTACTCATAACTAGTCGTCGTCG
GAGTCCACCTGGAACTTGTCGCTGTTGGCATCCAACGGTTCCCACTTCTTCGCCAGCGCCGCGGG
CGCCCCCTCCTTGCGTCGCGGCAAGTCGGGCAAGTCCTTGTCGTTGTTGTCCATGCGGATCAGCG
GCAAGTGCGAGTCACCAATGATCTCGGGATCCTCGTCAAACCGCGAGTGGGTGCGACGGTTGGGA
GCCTGCAGCCCGCCCAACGCGCCAAACAACGGGCCCTGCTGGCGCTGCGAAGGGGACTCCTGGTC
GCCCAGCAACTCCTCGAACTTCTTGGTAAGCCCCAGCATCCACCCGTTGATCGTGGTCTTGGCCT
CCTCGATCCCCTGGTTGAAGGTCTCCTTGATCTGCTCAAACTCGTCGGGCGAGTCGTCGTCGTGC
TGCTGCTGCTGCGGGTGGCCCTGGCGAGTGCGGCGGCCCTCGCGC
Found at i:92742 original size:15 final size:15
Alignment explanation
Indices: 92718--92785 Score: 88
Period size: 15 Copynumber: 4.7 Consensus size: 15
92708 TATCGTCGGA
*
92718 CTTGGTGTCCTTGTC
1 CTTGGAGTCCTTGTC
92733 CTTGGAGTCCTTGTC
1 CTTGGAGTCCTTGTC
*
92748 CTTAGAGTCCTTGTC
1 CTTGGAGTCCTTGTC
*
92763 CTTGGATTCC--G-C
1 CTTGGAGTCCTTGTC
92775 CTTGGAGTCCT
1 CTTGGAGTCCT
92786 CCTTAGCGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
12 10 0.21
13 1 0.02
15 36 0.77
ACGTcount: A:0.07, C:0.28, G:0.25, T:0.40
Consensus pattern (15 bp):
CTTGGAGTCCTTGTC
Left flanking sequence: Indices 92218 -- 92717
ATCTGCTCAAACTCGTCGGGCGAGTCGTCGTCGTGCTGCTGCTGCTGCGGGTGGCCCTGGCGAGT
GCGGCGGCCCTCGCGCCGACGCCGACGGTCCTCTTCTTCGAACTGCTTCTGGAGCTTGCGGGCCA
AAATCTCATCCTCCGTCAACAGCGGGTACTTGGCGCCGGCTGCGGTGCCGCCAGCGACGGTGGCC
AGGGCTGCGGGGGCAGTCGCGGGGCCGGTGGGAATGTCTACCTGCTGCAGCGGGTCGAACCAGTA
GAGTAACGCCGAGAACGCCAGCTCCAAGTTGCCCTGGGAGGCCACGAGCACGGTGGTGATCAACT
TGTTGTCGGCATCGGGGAATGCCAGTTTGAGCTCGTTCTTGAGTGCCTCCACGGGGTCAACCGGT
CGCTTGGGCTTGGGCGGCGCCTGTTCGTCGTCGTCGTCCTTAGCCTCCTTCTTGTCAGTCTCGGA
GGTTTTGGTGTCCTTCGTGTCTTTGGCGTCCTTCTTATCGTCGGA
Right flanking sequence: Indices 92786 -- 93285
CCTTAGCGGTCTCCTTCGTGTCTTTGGCGTCGTCCTTGTCCGTCTCCGTGGCCTTCGTGGTGTCC
TCCTTCAGGGAGTCCTTGGCCTTGTCGTCGGCATCGCTGTCCAATTGCACTTCCTCAGTCTTGTC
ATCATCAATTGAGTCCAAGGGCTTACCCTGAACAGGCTTCAAGTCGTTCTTTTTCGTCATGATGA
TGGTGGTGGCGACAAATGGCTTTATCTACGCGCGGGTAGTTGATGCACTGAACTGGTTGTATGCA
TTCCGACCGAGGGGCGGAGTGGGGAAGTGGGCACATAACGTGGGACTACCTCATAGCCGTGGTAA
CGGTGCATTTCCTCGGTGGGGCGGTTGCTTCGAGAACTTTCGGGGTGTGTCCGAGTCTCTTGTGA
CATTTCCCTTAGTTTGGTAAATTATTTGCAGCCATTGTAAAATGTTGGTAGATTGATTGGGACGG
GGGAGAAGCGGAACAGCTGCTGGGTAACATAGGTCTTTTCACTGC
Found at i:113927 original size:24 final size:24
Alignment explanation
Indices: 113895--113960 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
113885 TTAGGGGCAG
113895 CGAAGCAGGAGATTGTGAGACTA-T
1 CGAAGCAGGAGATTGTGAGA-TATT
*
113919 CGAAGCAGGAGATTGGGAGATATT
1 CGAAGCAGGAGATTGTGAGATATT
*
113943 TGAAGCAGGAGATTGTGA
1 CGAAGCAGGAGATTGTGA
113961 AACAATCGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 2 0.05
24 36 0.95
ACGTcount: A:0.33, C:0.09, G:0.36, T:0.21
Consensus pattern (24 bp):
CGAAGCAGGAGATTGTGAGATATT
Left flanking sequence: Indices 113395 -- 113894
GCGGCTCGCCCACGGGGTGCTTCGACTCGTAGAGGTACTCTTTGCTGGTAAGTTTGCCGTACTCG
TGGTCGGCCTGCACCAGCTCGGGACGGGTGTCCACGGGAGCATGCGGGATCTCCGTGGTTAAGGT
CATGAGCAAACGAGGGTCAGTATCAGCGCCCTATGCAAAGATCGACGGGGGACACGGAACGGTTG
AGCGGTGTGCCTGTACTCTTGTCAAAGAAAAAAGTCAGATGTTGTTGGCGCGGTTGCAACGAAAA
AAAATGAGCGCGTATTGCAGTAAGGGTCGTGCGACGCCAGAGAAATAGGGGTAGCTCGTCTAACC
GCGGTCTGGGCGACACTCGCGGCGACGGTGTCGGCGTCGGAGCCTCTGCCGTCGCGGGGTGAGTC
ACAGGTGCACCCCGCATTTGTAGGATGGTTCCTGGCCCGCAAGCTCACGCGACCACGGGCTCGGC
ATTCCAGTTACCGCACCCGAAAACTGACTTCAGGGTTAGGGGCAG
Right flanking sequence: Indices 113961 -- 114460
AACAATCGTTAAACAGGAGAAAATGTGGGCGATAGGGACAATGGAGAACTACTTTTACGTATAGA
TTGTCTAAGTTGCAATTTTGTGTAATGTGTTCGGGAACCCAATGCGGTAGTGATCGGGCTAGTTG
TGATCGCGTTAATTGTGATCGCGTTAGTATTGATCGGGCTGCGATTGGGCTATTGTGAATTAGGC
GGGCTAGTTGCGAGTAACGGCGGGTGGCAGTTATGGCGGGTGGAGGATAGTTGCTGTTCGGGTGT
TATTTGCTATTTGTAGTCGTGGCCGTTGTAGTCGCAGTGCTCACTGTCGGTACAGGTGGGTAGCC
ATTGTCGGTATTCGCGGATGGTCGCTGCAGCCTGGAATAGTCTCCAGCGGTTTATTTCGTATTCG
CTGTCCTTAGTATCTGTTGATTCACGAGTAGTCACTGCATTCTCGGTCATATTCGTCATATTCAC
TCTCGTGAGCTACGCTAGCACTCGCCAGCCACCAATATTCTCATT
Found at i:114095 original size:15 final size:15
Alignment explanation
Indices: 114075--114118 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
114065 CAATGCGGTA
*
114075 GTGATCGGGCTAGTT
1 GTGATCGCGCTAGTT
* *
114090 GTGATCGCGTTAATT
1 GTGATCGCGCTAGTT
*
114105 GTGATCGCGTTAGT
1 GTGATCGCGCTAGT
114119 ATTGATCGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.16, C:0.14, G:0.34, T:0.36
Consensus pattern (15 bp):
GTGATCGCGCTAGTT
Left flanking sequence: Indices 113575 -- 114074
GACACGGAACGGTTGAGCGGTGTGCCTGTACTCTTGTCAAAGAAAAAAGTCAGATGTTGTTGGCG
CGGTTGCAACGAAAAAAAATGAGCGCGTATTGCAGTAAGGGTCGTGCGACGCCAGAGAAATAGGG
GTAGCTCGTCTAACCGCGGTCTGGGCGACACTCGCGGCGACGGTGTCGGCGTCGGAGCCTCTGCC
GTCGCGGGGTGAGTCACAGGTGCACCCCGCATTTGTAGGATGGTTCCTGGCCCGCAAGCTCACGC
GACCACGGGCTCGGCATTCCAGTTACCGCACCCGAAAACTGACTTCAGGGTTAGGGGCAGCGAAG
CAGGAGATTGTGAGACTATCGAAGCAGGAGATTGGGAGATATTTGAAGCAGGAGATTGTGAAACA
ATCGTTAAACAGGAGAAAATGTGGGCGATAGGGACAATGGAGAACTACTTTTACGTATAGATTGT
CTAAGTTGCAATTTTGTGTAATGTGTTCGGGAACCCAATGCGGTA
Right flanking sequence: Indices 114119 -- 114618
ATTGATCGGGCTGCGATTGGGCTATTGTGAATTAGGCGGGCTAGTTGCGAGTAACGGCGGGTGGC
AGTTATGGCGGGTGGAGGATAGTTGCTGTTCGGGTGTTATTTGCTATTTGTAGTCGTGGCCGTTG
TAGTCGCAGTGCTCACTGTCGGTACAGGTGGGTAGCCATTGTCGGTATTCGCGGATGGTCGCTGC
AGCCTGGAATAGTCTCCAGCGGTTTATTTCGTATTCGCTGTCCTTAGTATCTGTTGATTCACGAG
TAGTCACTGCATTCTCGGTCATATTCGTCATATTCACTCTCGTGAGCTACGCTAGCACTCGCCAG
CCACCAATATTCTCATTCATTCGTTATCTATGTACAATGGTTACTTCCAGAACCAGCCCTTGTTG
TGGTCAGTAGTGGTGCTCTCGTCTACCACCCGCCACTCGTCGTTGCTGCCCACAGGCCGCTCACG
GGTCACCACAGTGGTGGTGGTGGTGCCGTCGGACTTGGTGTCGGA
Found at i:114126 original size:15 final size:15
Alignment explanation
Indices: 114088--114116 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
114078 ATCGGGCTAG
114088 TTGTGATCGCGTTAA
1 TTGTGATCGCGTTAA
114103 TTGTGATCGCGTTA
1 TTGTGATCGCGTTA
114117 GTATTGATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.14, G:0.28, T:0.41
Consensus pattern (15 bp):
TTGTGATCGCGTTAA
Left flanking sequence: Indices 113588 -- 114087
TGAGCGGTGTGCCTGTACTCTTGTCAAAGAAAAAAGTCAGATGTTGTTGGCGCGGTTGCAACGAA
AAAAAATGAGCGCGTATTGCAGTAAGGGTCGTGCGACGCCAGAGAAATAGGGGTAGCTCGTCTAA
CCGCGGTCTGGGCGACACTCGCGGCGACGGTGTCGGCGTCGGAGCCTCTGCCGTCGCGGGGTGAG
TCACAGGTGCACCCCGCATTTGTAGGATGGTTCCTGGCCCGCAAGCTCACGCGACCACGGGCTCG
GCATTCCAGTTACCGCACCCGAAAACTGACTTCAGGGTTAGGGGCAGCGAAGCAGGAGATTGTGA
GACTATCGAAGCAGGAGATTGGGAGATATTTGAAGCAGGAGATTGTGAAACAATCGTTAAACAGG
AGAAAATGTGGGCGATAGGGACAATGGAGAACTACTTTTACGTATAGATTGTCTAAGTTGCAATT
TTGTGTAATGTGTTCGGGAACCCAATGCGGTAGTGATCGGGCTAG
Right flanking sequence: Indices 114117 -- 114616
GTATTGATCGGGCTGCGATTGGGCTATTGTGAATTAGGCGGGCTAGTTGCGAGTAACGGCGGGTG
GCAGTTATGGCGGGTGGAGGATAGTTGCTGTTCGGGTGTTATTTGCTATTTGTAGTCGTGGCCGT
TGTAGTCGCAGTGCTCACTGTCGGTACAGGTGGGTAGCCATTGTCGGTATTCGCGGATGGTCGCT
GCAGCCTGGAATAGTCTCCAGCGGTTTATTTCGTATTCGCTGTCCTTAGTATCTGTTGATTCACG
AGTAGTCACTGCATTCTCGGTCATATTCGTCATATTCACTCTCGTGAGCTACGCTAGCACTCGCC
AGCCACCAATATTCTCATTCATTCGTTATCTATGTACAATGGTTACTTCCAGAACCAGCCCTTGT
TGTGGTCAGTAGTGGTGCTCTCGTCTACCACCCGCCACTCGTCGTTGCTGCCCACAGGCCGCTCA
CGGGTCACCACAGTGGTGGTGGTGGTGCCGTCGGACTTGGTGTCG
Found at i:120322 original size:9 final size:9
Alignment explanation
Indices: 120308--120332 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
120298 AGTCGTCGTC
120308 GTAGCTCTG
1 GTAGCTCTG
120317 GTAGCTCTG
1 GTAGCTCTG
120326 GTAGCTC
1 GTAGCTC
120333 AGCGCGCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (9 bp):
GTAGCTCTG
Left flanking sequence: Indices 119808 -- 120307
CCGTCGCGCCGCATGGGCTTGCGTGGGATCTCGGGCAACAACAGGTAGTCGAACTCGGCGGTGTA
GGTGTCACTCAGGTCGAGCAGGTCGTCCATCAGGTCCAAGATGTTGTACTGCTCGCTCTCAGGCG
CCTCGCTGGGCGCCATCCCCGAGAAGTCGTAGTTGTACAACCGCTGGTCGAACCCGTTGGCGGCC
AACCCGGGCAGCGGTTTGGGGAACATCAGCTCGGCCATCAGGTGCTGGCGCGAGTGCGGTATCCG
CAGCGCGGTGCTGGCGCGGCTGGGCAGCGTCAGGGCGCCCGGAGGCAGCGTGGGCAGCATGAGGC
TGCCGTTGCTGTCCACCAGCAGCAAGCTTTTGTTGCCAAACAGCGCCCCCGCAAAGTAGCCTTCG
GGCCGAGGCGGAAGCTGCGGCGGCTGGAAAACGTCGGTGGACGGGTTGCCCTCGCTGCCGTAGTG
GTAGCTGGCCAGGCGCTGGTCATCGTACCGGTGGTAGTCGTCGTC
Right flanking sequence: Indices 120333 -- 120832
AGCGCGCTGTGGTAGCTCAGGGTGCTGTGGTAGCTGTGGCGGGTGGGCTCCTCGAGATACGGGCG
GTCGTCCACCAACAAGTTGAGCACCAAGTCCTGTGCCGGGTACGGCGCACTCAGAGCCATCGAGG
TGTCGGCGATGAACGGGTTGTCCGAGGACAGGGCCACTGCGGGGGACGTCAGCGGCAGCGAGATC
CCCTGGAACGAGCGCTCGCGATCGCGATACGACCCGCGGAAGTAGGTGTCGATCGATTTGGGCCC
CACTAGCCTCAGAGGCAGCACCTGGATATGGGTGGGCAGCCCTGACGGCGGCAGCTGGGGCTCGT
CCTCAAAGACGATCTCCGGGGGTGGTTTGCGTGTGAGTCGTTTGGACGACGCAGACATAGGGAGA
CCAGTGGTGAGCTCTGTCGTCTGGCGGGTGGAGAGGACGGCTACCGTTGGGAAATTTATTATGAT
TGAATCTCTTTTCGGAGCCGTTACAGTCACGTGCACACTATCGAC
Found at i:120345 original size:18 final size:18
Alignment explanation
Indices: 120324--120367 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
120314 CTGGTAGCTC
120324 TGGTAGCTCAGCGCGCTG
1 TGGTAGCTCAGCGCGCTG
* *
120342 TGGTAGCTCAGGGTGCTG
1 TGGTAGCTCAGCGCGCTG
120360 TGGTAGCT
1 TGGTAGCT
120368 GTGGCGGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.11, C:0.20, G:0.41, T:0.27
Consensus pattern (18 bp):
TGGTAGCTCAGCGCGCTG
Left flanking sequence: Indices 119824 -- 120323
GCTTGCGTGGGATCTCGGGCAACAACAGGTAGTCGAACTCGGCGGTGTAGGTGTCACTCAGGTCG
AGCAGGTCGTCCATCAGGTCCAAGATGTTGTACTGCTCGCTCTCAGGCGCCTCGCTGGGCGCCAT
CCCCGAGAAGTCGTAGTTGTACAACCGCTGGTCGAACCCGTTGGCGGCCAACCCGGGCAGCGGTT
TGGGGAACATCAGCTCGGCCATCAGGTGCTGGCGCGAGTGCGGTATCCGCAGCGCGGTGCTGGCG
CGGCTGGGCAGCGTCAGGGCGCCCGGAGGCAGCGTGGGCAGCATGAGGCTGCCGTTGCTGTCCAC
CAGCAGCAAGCTTTTGTTGCCAAACAGCGCCCCCGCAAAGTAGCCTTCGGGCCGAGGCGGAAGCT
GCGGCGGCTGGAAAACGTCGGTGGACGGGTTGCCCTCGCTGCCGTAGTGGTAGCTGGCCAGGCGC
TGGTCATCGTACCGGTGGTAGTCGTCGTCGTAGCTCTGGTAGCTC
Right flanking sequence: Indices 120368 -- 120867
GTGGCGGGTGGGCTCCTCGAGATACGGGCGGTCGTCCACCAACAAGTTGAGCACCAAGTCCTGTG
CCGGGTACGGCGCACTCAGAGCCATCGAGGTGTCGGCGATGAACGGGTTGTCCGAGGACAGGGCC
ACTGCGGGGGACGTCAGCGGCAGCGAGATCCCCTGGAACGAGCGCTCGCGATCGCGATACGACCC
GCGGAAGTAGGTGTCGATCGATTTGGGCCCCACTAGCCTCAGAGGCAGCACCTGGATATGGGTGG
GCAGCCCTGACGGCGGCAGCTGGGGCTCGTCCTCAAAGACGATCTCCGGGGGTGGTTTGCGTGTG
AGTCGTTTGGACGACGCAGACATAGGGAGACCAGTGGTGAGCTCTGTCGTCTGGCGGGTGGAGAG
GACGGCTACCGTTGGGAAATTTATTATGATTGAATCTCTTTTCGGAGCCGTTACAGTCACGTGCA
CACTATCGACGGCTACGCAGGGTTTATGTAGGGGGAAGCAGTGTC
Found at i:122064 original size:9 final size:9
Alignment explanation
Indices: 122050--122080 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
122040 TCAGGCCGAG
122050 GAGGAGGAA
1 GAGGAGGAA
122059 GAGGAGGAA
1 GAGGAGGAA
*
122068 GAGAAGGAA
1 GAGGAGGAA
122077 GAGG
1 GAGG
122081 CCAATGACGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (9 bp):
GAGGAGGAA
Left flanking sequence: Indices 121550 -- 122049
GCTCCCATTTCAAAAGCCCACGTTACTGCCAGCTCTTGATTGTCCCCCTACACACACGCCAGTAA
CACCTCGCACCCCGCCACCCTACGGCTTTTTGCGTGCTCGCGCCCCGTCTTCTGTGTCACTGTCA
CGTCTCACATTTTCCACGCGCGTCTCAATTTCAGATCCAGACCATCATGGCGTACAGCAAGGAAA
TCACCGCATTGGTGGCGGAGGGTTCCAAGGCCTACTCGGGCAAGGACTACGAGGTAGCGTGTGAC
CGCTACTCCAAAGCCTGCGAGACTTTTCAGCAGGAAAACGACCGCGATGACCCCGATCTCCTCTT
CTTGTACGGGAAGGCGCTCTACCAGCTGGCGGTAGCGACGGCCGGAGTCTTGGGGGCCGAGGTGG
CCACCAACACCAACAAACCCGCGTCCAACGACGACGAAGAGACCGAGAACAGCGAGCAATTCCAG
TTGGAAGCCCCGATGGCCATCGGAGAGGAGGTCCCTCAGGCCGAG
Right flanking sequence: Indices 122081 -- 122580
CCAATGACGAGGCCAACGACGAGAACGAAGCCGAGGAAGAGCCTGAGAACGGTGGCAACTCGCTC
TTCGAAGAAGCGTGGGACGTGCTCGAGATGGCCCGCTCCGTGTGGCAGAAGGACTACGAGACCAA
CCCTGAGGACCCCACCGCGCTCAAAAAGCTCGCGGAAGTGTACGACCTACTCGGCGAGGTGTCTC
TCGAGGCAGAGAACTTCCCCCAGCTGCTCTTGGACTTCAAGCAGTGCCTCGAGTTCCGCCAGAAG
ATTTGCAAGGACGACCCCAGCAACGAGTTGGTGGTGGAGGCCACGTACAAGATCGCGTTGAGCGA
GGAGTACTGCGGCAACCGCGACCTGGCCATCACCTACCTCGACAAGGCGATTGCCCTCCTTGCCC
AGCAGGACGGCGACGACGCCAAAATGAAGCTGAACAAGGAGCTCATCCAAGACTTGACCACCAAG
AAGGAGGACATCAAGCGCGATCAGCAGGACGAGGAGGCCGAGCAA
Found at i:181667 original size:18 final size:18
Alignment explanation
Indices: 181646--181704 Score: 109
Period size: 18 Copynumber: 3.3 Consensus size: 18
181636 GGGTGCACCT
181646 ACAGGCGGAGGAGCACTC
1 ACAGGCGGAGGAGCACTC
181664 ACAGGCGGAGGAGCACTC
1 ACAGGCGGAGGAGCACTC
*
181682 ACAGGCGGAGGAGCACTT
1 ACAGGCGGAGGAGCACTC
181700 ACAGG
1 ACAGG
181705 TTGAGGAGCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.29, C:0.25, G:0.39, T:0.07
Consensus pattern (18 bp):
ACAGGCGGAGGAGCACTC
Left flanking sequence: Indices 181146 -- 181645
TATATGGAAAAAAAAATTACTGAGGAGTGGTTTCAAGTCGATATCTTAGAAACCCTCTACATGAA
GAATGCCAGATGTAAGTGACATTGTTTTAACTGCAAGGGCATAATATTTCAGAGACAAGTTAGAC
TTATGGGCTTCCCATTTTTCCCAGAATTTGCTGAAAAATGTAAGGATCGTCAAGAATGGGAACGA
AACATGGACCGCCAGGGTTCGAATTTTACTCATGTCGTCTTCATACATTGCATATTCAATTCTTC
TTAGGAGGCGGAGGAACCAAAGAGTCAGTGCTCTGGGTGGGGCCATCGTTTTGTTGCGACTTCAC
TGTCTCTTCTTCCATGTAACTTGAAATATCCAACACAGCCGTGCCCATAGTATGGCGGGACTTTT
TGCGGGCTGCTGGCGGATGAGGGACAAAGCCACTGTCTTGAGGGGTTATCTGCGAAGGTGAGCCC
GTCGGTTTATCCGCTTGCGGCGCGCCGACGGGTGGGGGTGCACCT
Right flanking sequence: Indices 181705 -- 182204
TTGAGGAGCGCTTACAGGTTGAGGAGCGCTAACTGGTTGGGGAGCAAACAGGGGAGGTGTATCCA
CAGACGGTGCTCCGGCCAAGAAGGGCATGGTTTGAGGCGATTGCACTTCCACCTGTGGGGAACCG
AGCAGGTTATTACTAGGGGATTGTTTCTCCTGAGGTGCTTGCTCAGTGGCCTTGTCTGGCTCTTC
GGTAGGAGCATGCGCCGACGAAGGAGTTTCCCAGGGTTTGATCAGTGGAGCAGATTGCTTTTCAC
TCGGTTCCGCATTGGAACCGTACTCGACCTTCGCATCTGATTCAAACAATACATCGTCGACAATT
GACTCAGAATTGAACTTACCAACAACCTCAGGGATGCGATGCAACAATCCATAGCCCACGTCGCA
GCCCAAGAGACCTCGGTTGTGACCCAGTCCCCAGGACCGGGTTAAATTCACAGTGACGGGGCGCA
ACACGTCGTAGTCGTGGTTGTATACGTAGAAAGTGATGGGGATGT
Found at i:181710 original size:18 final size:18
Alignment explanation
Indices: 181653--181750 Score: 97
Period size: 18 Copynumber: 5.4 Consensus size: 18
181643 CCTACAGGCG
**
181653 GAGGAGCACTCACAGGCG
1 GAGGAGCACTCACAGGTT
**
181671 GAGGAGCACTCACAGGCG
1 GAGGAGCACTCACAGGTT
*
181689 GAGGAGCACTTACAGGTT
1 GAGGAGCACTCACAGGTT
* *
181707 GAGGAGCGCTTACAGGTT
1 GAGGAGCACTCACAGGTT
* * *
181725 GAGGAGCGCTAACTGGTT
1 GAGGAGCACTCACAGGTT
*
181743 GGGGAGCA
1 GAGGAGCA
181751 AACAGGGGAG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.40, T:0.14
Consensus pattern (18 bp):
GAGGAGCACTCACAGGTT
Left flanking sequence: Indices 181153 -- 181652
AAAAAAAAATTACTGAGGAGTGGTTTCAAGTCGATATCTTAGAAACCCTCTACATGAAGAATGCC
AGATGTAAGTGACATTGTTTTAACTGCAAGGGCATAATATTTCAGAGACAAGTTAGACTTATGGG
CTTCCCATTTTTCCCAGAATTTGCTGAAAAATGTAAGGATCGTCAAGAATGGGAACGAAACATGG
ACCGCCAGGGTTCGAATTTTACTCATGTCGTCTTCATACATTGCATATTCAATTCTTCTTAGGAG
GCGGAGGAACCAAAGAGTCAGTGCTCTGGGTGGGGCCATCGTTTTGTTGCGACTTCACTGTCTCT
TCTTCCATGTAACTTGAAATATCCAACACAGCCGTGCCCATAGTATGGCGGGACTTTTTGCGGGC
TGCTGGCGGATGAGGGACAAAGCCACTGTCTTGAGGGGTTATCTGCGAAGGTGAGCCCGTCGGTT
TATCCGCTTGCGGCGCGCCGACGGGTGGGGGTGCACCTACAGGCG
Right flanking sequence: Indices 181751 -- 182250
AACAGGGGAGGTGTATCCACAGACGGTGCTCCGGCCAAGAAGGGCATGGTTTGAGGCGATTGCAC
TTCCACCTGTGGGGAACCGAGCAGGTTATTACTAGGGGATTGTTTCTCCTGAGGTGCTTGCTCAG
TGGCCTTGTCTGGCTCTTCGGTAGGAGCATGCGCCGACGAAGGAGTTTCCCAGGGTTTGATCAGT
GGAGCAGATTGCTTTTCACTCGGTTCCGCATTGGAACCGTACTCGACCTTCGCATCTGATTCAAA
CAATACATCGTCGACAATTGACTCAGAATTGAACTTACCAACAACCTCAGGGATGCGATGCAACA
ATCCATAGCCCACGTCGCAGCCCAAGAGACCTCGGTTGTGACCCAGTCCCCAGGACCGGGTTAAA
TTCACAGTGACGGGGCGCAACACGTCGTAGTCGTGGTTGTATACGTAGAAAGTGATGGGGATGTT
GTCTTGCAACGTTCGCTGGAAGTGGTAGTTGTAGTAGTTCGATAC
Found at i:181743 original size:36 final size:36
Alignment explanation
Indices: 181646--181750 Score: 111
Period size: 36 Copynumber: 2.9 Consensus size: 36
181636 GGGTGCACCT
* **
181646 ACAGGCGGAGGAGCACTCACAGGCGGAGGAGCACTC
1 ACAGGCGGAGGAGCACTAACAGGTTGAGGAGCACTC
* * *
181682 ACAGGCGGAGGAGCACTTACAGGTTGAGGAGCGCTT
1 ACAGGCGGAGGAGCACTAACAGGTTGAGGAGCACTC
** * * *
181718 ACAGGTTGAGGAGCGCTAACTGGTTGGGGAGCA
1 ACAGGCGGAGGAGCACTAACAGGTTGAGGAGCA
181751 AACAGGGGAG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.26, C:0.21, G:0.40, T:0.13
Consensus pattern (36 bp):
ACAGGCGGAGGAGCACTAACAGGTTGAGGAGCACTC
Left flanking sequence: Indices 181146 -- 181645
TATATGGAAAAAAAAATTACTGAGGAGTGGTTTCAAGTCGATATCTTAGAAACCCTCTACATGAA
GAATGCCAGATGTAAGTGACATTGTTTTAACTGCAAGGGCATAATATTTCAGAGACAAGTTAGAC
TTATGGGCTTCCCATTTTTCCCAGAATTTGCTGAAAAATGTAAGGATCGTCAAGAATGGGAACGA
AACATGGACCGCCAGGGTTCGAATTTTACTCATGTCGTCTTCATACATTGCATATTCAATTCTTC
TTAGGAGGCGGAGGAACCAAAGAGTCAGTGCTCTGGGTGGGGCCATCGTTTTGTTGCGACTTCAC
TGTCTCTTCTTCCATGTAACTTGAAATATCCAACACAGCCGTGCCCATAGTATGGCGGGACTTTT
TGCGGGCTGCTGGCGGATGAGGGACAAAGCCACTGTCTTGAGGGGTTATCTGCGAAGGTGAGCCC
GTCGGTTTATCCGCTTGCGGCGCGCCGACGGGTGGGGGTGCACCT
Right flanking sequence: Indices 181751 -- 182250
AACAGGGGAGGTGTATCCACAGACGGTGCTCCGGCCAAGAAGGGCATGGTTTGAGGCGATTGCAC
TTCCACCTGTGGGGAACCGAGCAGGTTATTACTAGGGGATTGTTTCTCCTGAGGTGCTTGCTCAG
TGGCCTTGTCTGGCTCTTCGGTAGGAGCATGCGCCGACGAAGGAGTTTCCCAGGGTTTGATCAGT
GGAGCAGATTGCTTTTCACTCGGTTCCGCATTGGAACCGTACTCGACCTTCGCATCTGATTCAAA
CAATACATCGTCGACAATTGACTCAGAATTGAACTTACCAACAACCTCAGGGATGCGATGCAACA
ATCCATAGCCCACGTCGCAGCCCAAGAGACCTCGGTTGTGACCCAGTCCCCAGGACCGGGTTAAA
TTCACAGTGACGGGGCGCAACACGTCGTAGTCGTGGTTGTATACGTAGAAAGTGATGGGGATGTT
GTCTTGCAACGTTCGCTGGAAGTGGTAGTTGTAGTAGTTCGATAC
Found at i:207914 original size:15 final size:14
Alignment explanation
Indices: 207886--207924 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
207876 GTCTTCCTCA
207886 TCCTCA-TC-CTCG
1 TCCTCACTCTCTCG
207898 TCCTCACTGCTCTCG
1 TCCTCACT-CTCTCG
207913 TCCTCACTCTCT
1 TCCTCACTCTCT
207925 TCCCCGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 1 0.04
14 5 0.21
15 12 0.50
ACGTcount: A:0.08, C:0.49, G:0.08, T:0.36
Consensus pattern (14 bp):
TCCTCACTCTCTCG
Left flanking sequence: Indices 207386 -- 207885
GCAAAGTGGCGTGCTGCACCTGCTTGCCGAACTTCTTCAACGAGCGCTGCTTCTTGGCCTCCTCG
GAAGCCTTCTTGTTGGCAGCCTCGGTCAACAACTTCTGCTTGAGCTTCTGCATGTGGTTGTCACT
CTTGACCATCTCAGCAAAGTAGTCGAGAGGACGCGAGAAGGGAACATTGAGCTTACGGAGGGTAT
CACGCGACTGCTTGACAGCCTCCAAACCCTGTTTGTAAAAAGCAAGCTCACGTTCAGTGTCATCG
TAAATATCCTTGATGCCCTTCTCAGTAGACTCGTCACCAGTCACCGACAAGTGCTCAGTGAAGGC
GTGCTTGGCCCAAGGAAGTTCGATACGCGCAAGGGCTTGCTTCAAAGCAGTCTGATTGTCGATAG
TGAGCTTGTGGTGAGGAACGACGTCTGCGTCTTCGTCAAGTTCGACGTCCGAAAGGGGCACATCA
GAAGCCTCAGCCTCCTCGTCCTCACCAGCCTCGGGGTCTTCCTCA
Right flanking sequence: Indices 207925 -- 208424
TCCCCGTTGATGTCCGACTCACTGTCACTGCGAGCCAACTTTTCCAAATCAAGGGCCTGCTCGTC
CTCGTCGTCTTCTTCCTGGGCGATCTCCTCCTGGAGTTTGAGCAACTTCTTCTTCAACTTTCTCT
GCTCCTTCTTGGAAAGGGTGTTCTTGCTGAAGTCAACTTCGAGCTCAGTAGCGGGAGGGGCCACC
TCTTCCTCCTCGGATTCACTCACATCCTCCTCCAGCTCAACGTCCTTCACCGGCTTGCCCCCCTT
CTTGGTGTTCTTGGGCTTTTCGGTAGCGGCAACAGCCTTGGCCACCTCCAATTGTCTCTTCAAAC
CCTTCTTAGCCATTGTAGTTAGAGTCTGACGATGGGGTCTCACTCAAGCTTATTTCGCGATGAGC
TCGCAGAGACCCTTTTCTGTGTGCAGGCGGTAATGAAGGGTGAAGAGACACCGTGGAGAGAATGA
TTATTGTGATATAACCACTATTAAGACGCTTGTATTATCTTCTAT
Found at i:234801 original size:12 final size:12
Alignment explanation
Indices: 234784--234818 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
234774 CGTTTTCGGC
234784 CTTGTCATCAGT
1 CTTGTCATCAGT
234796 CTTGTCATCAGT
1 CTTGTCATCAGT
234808 CTTGTCATCAG
1 CTTGTCATCAG
234819 CCTTATCACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (12 bp):
CTTGTCATCAGT
Left flanking sequence: Indices 234284 -- 234783
CAGTGATCCCTGGCAAGACCACAGTGGACCAGATTGAGGAGGCATTTGAGAAATTCACCTCCGAG
CGCGACGACATTGCTATTTTGTTAATCAACCAGCACTTGGCTGACCAGATTCGCTACAAGGTGGA
GTCGTACACCAACGCGTTCCCGGCTATTTTGGAGATTCCCAGCAAGGACCACCCCTACGATCCCG
AAAAGGACTCGATTTTGAAGAAGGTGAGACGGTTGTTTGGCGAATAAGTATTTCATCGGGTTTAA
AAGAGCCGGTCTCGCTCCCCCATATAAGTTAATGCACGCACGGTAAGGCTATCGCCACAGTAGGT
TATTGGCAAGTTTGATTATGCTATAAAAACTCTAGATTAACTACTTTTTGCCTTTCTTCTTCTTT
TTGTTCTTCCCACCAGTTTGGACAGGGGTGGTGGTGTCGTTCAAGTCAACTTCCTCAATGCCACC
TTCAAGGTCGCCGTCGTCGTTCTGCGCCTTCTCCTCGTTTTCGGC
Right flanking sequence: Indices 234819 -- 235318
CCTTATCACCGGCCTTCTCTTCAACCTTTTCTTCAGTCTTTTCGTCGGGCTTCTCATCGTCCTTC
TTCTCTTCGCCCTCCGCATCCTTTTTCTTCAAGCTCACGGGTTGAGGCACAGGCTGCGCTCTTTG
CACCTCAATGGGGTACTGTTCAATAAGAGGAGCAGGAGACGACTCAGCGGCCGCAAGTTCCTCCG
CAAGAGACATCTTCGGCTGGGTGCCGTGGGAGGCGTCGAGAGTGTCAGCGAGGTTGGCCTGGGAG
TTGGCCACCGAGTTCAAGTTGATGTCAACCAAGTCACCAGTGGATGCGTCGGGTTCAGGAGCAGC
CACGGGAGCCGCATCCTCGACCTCCTTGACCTCAAACGGGTCGGTCTCCTCGGCCTTGGGCTCGG
GAGCCTCTTCAGGGGTAGGCTCAGGAACAGGGTCCTCCGGAGGCACATTGGCCTCAGGCTCCTGG
TAGCCGAGATCGTCGGTGAGGCCCTCCACCAACGGGTCGGACGTC
Found at i:266823 original size:6 final size:6
Alignment explanation
Indices: 266809--266903 Score: 97
Period size: 6 Copynumber: 16.3 Consensus size: 6
266799 TTGGTTGTCG
* * * * * *
266809 TCGTTA TCGTCA TCGTCA TCGTCA TCATCG TCATCA TCATCG TCGTCA
1 TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA
* *
266857 TCGTCG TCGTCG TCGTCA TCGTCA TCGTCA TCG--- TCGTCA TCGTCA
1 TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA
266902 TC
1 TC
266904 CCCTCCGTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
3 3 0.04
6 74 0.96
ACGTcount: A:0.15, C:0.33, G:0.18, T:0.35
Consensus pattern (6 bp):
TCGTCA
Left flanking sequence: Indices 266309 -- 266808
CGTTGGTTAAATTTGTGGGGGAAGTTCGATATCTCAATATTCGGCGATAGGTCGCAATTTATACA
GGAGTCAGCCAAATCAGCCGATAGATCGGGAGTGAAGATGCAAGGGTGGACTCACACCGAAACTT
TGTTTGATTGACTATATGTCGAATTTGCTTTCCGTCTATTAACGAGCTAATCTAAGTCGTCACGA
ATGAGTATTAAGGAATATATTAAGCGGGGAATGAATTTTTAATGGCATTTTGTTCAGCCAACTCG
GTGTGCTCCTTCAATTCTTTGTTGGAGAAGGTATTTTTGCGGGTCCGGTGCAACATCCGCTGGCC
ACCAGTAAGGTTGGGGTCATCCTTGATGATGGGAGGAGGCGTGACGGTAGCTGGAAGCTCAGGAC
GAGTCGGGGGCACCTCAGGAGTAGCTGGATCATCGTCTTCATCCTCATCCTCTTCGACAATGGTG
ACAGGGCGAGGAGATTTGATAGCTGGCGGCGGGATTTGGTTGTCG
Right flanking sequence: Indices 266904 -- 267403
CCCTCCGTTTTCCTTGACCTTGTCGTCATCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCGCTTT
CATCTTGAGGACGACCAAGTTTCTGAGACACAAAGTCCACCACCTCACGCCAGCTTCTCATACCA
CCCATGGCGATGTTACCATAGATGTCAACACACTTCTCCACGGGCTTTAACACCGTCATCAGCGG
GAAACACTCTTGTAAGTTTTCGATTTGCATACGGGTAATGGGATGCGCATACATCGAGCTAGTCA
ACGCAAGGGCAGCGACAATAGGTTTGATGGGTCGCTCAGGGGTGCCTGCAGTAGGCCAAAGGTGC
AAAATGTCGGTCAACAAGTTGTCGGACAACCCGTTAGCAATCTTGGCCATCAGGTTCGCCGACAA
TGGAGCCAACAACAACACGTGGGTCCAACGCTGAATTTCCCACGACAAAATGTACTGGCTCAACA
TCAGCGGTGTCACATTTGCCGGAAGCTTGGTCATGGGCAGACCAC
Found at i:266836 original size:9 final size:9
Alignment explanation
Indices: 266824--266903 Score: 67
Period size: 9 Copynumber: 9.2 Consensus size: 9
266814 ATCGTCATCG
266824 TCATCGTCA
1 TCATCGTCA
266833 TCATCGTCA
1 TCATCGTCA
266842 TCA---TCA
1 TCATCGTCA
*
266848 TCGTCGTCA
1 TCATCGTCA
* *
266857 TCGTCGTCG
1 TCATCGTCA
*
266866 TCGTCGTCA
1 TCATCGTCA
* * *
266875 TCGTCATCG
1 TCATCGTCA
*
266884 TCATCGTCG
1 TCATCGTCA
266893 TCATCGTCA
1 TCATCGTCA
266902 TC
1 TC
266904 CCCTCCGTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
6 5 0.08
9 55 0.92
ACGTcount: A:0.15, C:0.34, G:0.17, T:0.34
Consensus pattern (9 bp):
TCATCGTCA
Left flanking sequence: Indices 266324 -- 266823
TGGGGGAAGTTCGATATCTCAATATTCGGCGATAGGTCGCAATTTATACAGGAGTCAGCCAAATC
AGCCGATAGATCGGGAGTGAAGATGCAAGGGTGGACTCACACCGAAACTTTGTTTGATTGACTAT
ATGTCGAATTTGCTTTCCGTCTATTAACGAGCTAATCTAAGTCGTCACGAATGAGTATTAAGGAA
TATATTAAGCGGGGAATGAATTTTTAATGGCATTTTGTTCAGCCAACTCGGTGTGCTCCTTCAAT
TCTTTGTTGGAGAAGGTATTTTTGCGGGTCCGGTGCAACATCCGCTGGCCACCAGTAAGGTTGGG
GTCATCCTTGATGATGGGAGGAGGCGTGACGGTAGCTGGAAGCTCAGGACGAGTCGGGGGCACCT
CAGGAGTAGCTGGATCATCGTCTTCATCCTCATCCTCTTCGACAATGGTGACAGGGCGAGGAGAT
TTGATAGCTGGCGGCGGGATTTGGTTGTCGTCGTTATCGTCATCG
Right flanking sequence: Indices 266904 -- 267403
CCCTCCGTTTTCCTTGACCTTGTCGTCATCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCGCTTT
CATCTTGAGGACGACCAAGTTTCTGAGACACAAAGTCCACCACCTCACGCCAGCTTCTCATACCA
CCCATGGCGATGTTACCATAGATGTCAACACACTTCTCCACGGGCTTTAACACCGTCATCAGCGG
GAAACACTCTTGTAAGTTTTCGATTTGCATACGGGTAATGGGATGCGCATACATCGAGCTAGTCA
ACGCAAGGGCAGCGACAATAGGTTTGATGGGTCGCTCAGGGGTGCCTGCAGTAGGCCAAAGGTGC
AAAATGTCGGTCAACAAGTTGTCGGACAACCCGTTAGCAATCTTGGCCATCAGGTTCGCCGACAA
TGGAGCCAACAACAACACGTGGGTCCAACGCTGAATTTCCCACGACAAAATGTACTGGCTCAACA
TCAGCGGTGTCACATTTGCCGGAAGCTTGGTCATGGGCAGACCAC
Found at i:266836 original size:15 final size:15
Alignment explanation
Indices: 266814--266903 Score: 108
Period size: 15 Copynumber: 6.0 Consensus size: 15
266804 TGTCGTCGTT
266814 ATCGTCATCGTCATC
1 ATCGTCATCGTCATC
* *
266829 GTCATCATCGTCATC
1 ATCGTCATCGTCATC
* *
266844 ATCATCGTCGTCATC
1 ATCGTCATCGTCATC
* * *
266859 GTCGTCGTCGTCGTC
1 ATCGTCATCGTCATC
266874 ATCGTCATCGTCATC
1 ATCGTCATCGTCATC
*
266889 GTCGTCATCGTCATC
1 ATCGTCATCGTCATC
266904 CCCTCCGTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 64 1.00
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.33
Consensus pattern (15 bp):
ATCGTCATCGTCATC
Left flanking sequence: Indices 266314 -- 266813
GTTAAATTTGTGGGGGAAGTTCGATATCTCAATATTCGGCGATAGGTCGCAATTTATACAGGAGT
CAGCCAAATCAGCCGATAGATCGGGAGTGAAGATGCAAGGGTGGACTCACACCGAAACTTTGTTT
GATTGACTATATGTCGAATTTGCTTTCCGTCTATTAACGAGCTAATCTAAGTCGTCACGAATGAG
TATTAAGGAATATATTAAGCGGGGAATGAATTTTTAATGGCATTTTGTTCAGCCAACTCGGTGTG
CTCCTTCAATTCTTTGTTGGAGAAGGTATTTTTGCGGGTCCGGTGCAACATCCGCTGGCCACCAG
TAAGGTTGGGGTCATCCTTGATGATGGGAGGAGGCGTGACGGTAGCTGGAAGCTCAGGACGAGTC
GGGGGCACCTCAGGAGTAGCTGGATCATCGTCTTCATCCTCATCCTCTTCGACAATGGTGACAGG
GCGAGGAGATTTGATAGCTGGCGGCGGGATTTGGTTGTCGTCGTT
Right flanking sequence: Indices 266904 -- 267403
CCCTCCGTTTTCCTTGACCTTGTCGTCATCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCGCTTT
CATCTTGAGGACGACCAAGTTTCTGAGACACAAAGTCCACCACCTCACGCCAGCTTCTCATACCA
CCCATGGCGATGTTACCATAGATGTCAACACACTTCTCCACGGGCTTTAACACCGTCATCAGCGG
GAAACACTCTTGTAAGTTTTCGATTTGCATACGGGTAATGGGATGCGCATACATCGAGCTAGTCA
ACGCAAGGGCAGCGACAATAGGTTTGATGGGTCGCTCAGGGGTGCCTGCAGTAGGCCAAAGGTGC
AAAATGTCGGTCAACAAGTTGTCGGACAACCCGTTAGCAATCTTGGCCATCAGGTTCGCCGACAA
TGGAGCCAACAACAACACGTGGGTCCAACGCTGAATTTCCCACGACAAAATGTACTGGCTCAACA
TCAGCGGTGTCACATTTGCCGGAAGCTTGGTCATGGGCAGACCAC
Found at i:266946 original size:3 final size:3
Alignment explanation
Indices: 266925--266964 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
266915 CCTTGACCTT
* * *
266925 GTC GTC ATC ATC GTT GTC GTC GTC GTC GTC GTC GTC GTC G
1 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC G
266965 CTTTCATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.05, C:0.30, G:0.30, T:0.35
Consensus pattern (3 bp):
GTC
Left flanking sequence: Indices 266425 -- 266924
TCACACCGAAACTTTGTTTGATTGACTATATGTCGAATTTGCTTTCCGTCTATTAACGAGCTAAT
CTAAGTCGTCACGAATGAGTATTAAGGAATATATTAAGCGGGGAATGAATTTTTAATGGCATTTT
GTTCAGCCAACTCGGTGTGCTCCTTCAATTCTTTGTTGGAGAAGGTATTTTTGCGGGTCCGGTGC
AACATCCGCTGGCCACCAGTAAGGTTGGGGTCATCCTTGATGATGGGAGGAGGCGTGACGGTAGC
TGGAAGCTCAGGACGAGTCGGGGGCACCTCAGGAGTAGCTGGATCATCGTCTTCATCCTCATCCT
CTTCGACAATGGTGACAGGGCGAGGAGATTTGATAGCTGGCGGCGGGATTTGGTTGTCGTCGTTA
TCGTCATCGTCATCGTCATCATCGTCATCATCATCGTCGTCATCGTCGTCGTCGTCGTCATCGTC
ATCGTCATCGTCGTCATCGTCATCCCCTCCGTTTTCCTTGACCTT
Right flanking sequence: Indices 266965 -- 267464
CTTTCATCTTGAGGACGACCAAGTTTCTGAGACACAAAGTCCACCACCTCACGCCAGCTTCTCAT
ACCACCCATGGCGATGTTACCATAGATGTCAACACACTTCTCCACGGGCTTTAACACCGTCATCA
GCGGGAAACACTCTTGTAAGTTTTCGATTTGCATACGGGTAATGGGATGCGCATACATCGAGCTA
GTCAACGCAAGGGCAGCGACAATAGGTTTGATGGGTCGCTCAGGGGTGCCTGCAGTAGGCCAAAG
GTGCAAAATGTCGGTCAACAAGTTGTCGGACAACCCGTTAGCAATCTTGGCCATCAGGTTCGCCG
ACAATGGAGCCAACAACAACACGTGGGTCCAACGCTGAATTTCCCACGACAAAATGTACTGGCTC
AACATCAGCGGTGTCACATTTGCCGGAAGCTTGGTCATGGGCAGACCACGCTTCTTTGAAATGTA
GTAGTTGGCGTTGTCATTCGAGAACCAAACTCGAACACCAAGCGC
Found at i:276637 original size:12 final size:12
Alignment explanation
Indices: 276605--276639 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
276595 GATCCCACGG
276605 CGCCAGCGGCGT
1 CGCCAGCGGCGT
*
276617 CGGCAGCGGCGT
1 CGCCAGCGGCGT
*
276629 CGCCCGCGGCG
1 CGCCAGCGGCG
276640 GCGTTGGGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.43, G:0.46, T:0.06
Consensus pattern (12 bp):
CGCCAGCGGCGT
Left flanking sequence: Indices 276105 -- 276604
CGACGTTGAGCGCCGCAAACACGAAGCGACGCCCGCGCTGCCGGTGTCGTACCGGGAGCTGCTGC
CCGACGTGACCCGGGTGGCCGGCAACCCGTTTGCCGTGAGCTCGAGCGACCCGCCGGCGACCGTC
GCCACCAAGTTTATCCAGTTGCTCGCGCTCGGGCCCGCGTCCGACGCCGATCTCACCGATAAGCT
CGGCGCAGTGCCGCTCGCCCAGCTCAAGACGGACTACGCCCAGGTGTACGACCCCAACAACGCAT
TCTACCAGGACGACCGCTTCCCGACGGTGGAGCGGCGCCGCCGGCTTGGCGGCGCCAGCGACAGC
GACGGACAGCAGTTCATCCTCAAAGACAAGTCATACAAAGAGTTTCAGCCGTGGGACTGGACTTT
TTACTCTGCATTCGAACGCAAACTCGTGTTGCAAAACATCCACCGGGCGCTCACCCGGCTCGGAT
ACCTGGAAACCCACCCGTTGCGGCGCAAGCTCGGCGATCCCACGG
Right flanking sequence: Indices 276640 -- 277139
GCGTTGGGAGGCGGGCGGCTCCTGCTGAAACGGGGGCTGCCGGTGCGCAGTTTGCCGGCAAAGCG
CAAGCTTCTGCTGCTGCTGTCGCTGTCGCTGGACGATGACAAGCACCCCAAGCGGCCCCGCGGCG
AGCTGGACACGCTGCCGCTGCTGGAGGACGACGACACCCCGTTGCTGCGGCGGGCACCCGCGACC
CCGGTGCCCGCGGCCGACCGGGCGGACAAGCCCGACAAGCGCATGGACTACTACACCCAGTTGGC
GGGCAAGTTCCGCGAGCGGTACAAGGAGTACGCCAGCCTCTACGCGCGGCTTCAGAACCCCGCCA
ACACCTCCAAGGCCGAGAGCAAGCGCCAGTTGCTCAAGCTCTTTGAAATGCACACCCAGTTGCTG
CAGTGGAAAAAGACGCTCTGGGACTACGACCACGACGCCGCGAAAAAGGCCGACATCATGGCGTT
GTCCAAGCACAAGAACCTGCCGCGGGCCACGCCCCCTCCGGGCCT
Found at i:279604 original size:12 final size:12
Alignment explanation
Indices: 279587--279640 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
279577 GCTTGGCGTC
**
279587 GGGCTCGAGGCT
1 GGGCTCGACACT
*
279599 GGGCTCGGCACT
1 GGGCTCGACACT
279611 GGGCTCGACACT
1 GGGCTCGACACT
* *
279623 GGGCTCAACGCT
1 GGGCTCGACACT
279635 GGGCTC
1 GGGCTC
279641 CGCAACGTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.11, C:0.31, G:0.41, T:0.17
Consensus pattern (12 bp):
GGGCTCGACACT
Left flanking sequence: Indices 279087 -- 279586
ATGCGGGTCACCGCCAGTCCCGGGTGGATGATGATCACGTCGTACCCGTTTTTCATCTTGTCGTC
CGAGACATCGACGTCTGCGTCGTCGTCGTCTTCTTCGTCGTCCGCCACCGCGGTGCCTGCCTTCT
TTTCGTTGACGGTCTGCACCAAGTCAAAGTATTCGAATTTGGGGATTTCTCCGCGGCCCTCCATG
GCCTCCTTAAGGGTGTCCTCGTCGACCTGGCCCTTCTTCACCTTCTGGATGAAGTCGCGCTCCTT
CCGCCACTGGCGGATGAATCCCACCTGCTCGTCCTTTTTGAGGTAGTCTGTGAAATAGTTCTTTT
GGTTGATGAGTGCGGCCTGTTTGATCACCGTGAGCGGGAACGCGTTGTCGTCGTCCTGACGGTAG
ATCCCCGTGCGGTGGGCCAACGTGGCCGCAGCACGTGCCCGTCCCTCCTTGCGCTTCTGCTCCAT
TTCCACCAGCTTCTTCGGGGTGGGTTTGCGTTGGCGCTTGGCGTC
Right flanking sequence: Indices 279641 -- 280140
CGCAACGTCAATCCCCGGCAGGGGCTCCACCACAGGCTCCATCGGCGACGGAACAATCCCTGGGG
ACAGCTCGAGATCGGGAGTTGACTCCATGTTGATGATATTTGAAATTTCGCGCGCACCGTTAAAG
CTATGCAGTGGCTGCTTCTACTAACGGTAGTGGTGGCGGTGGCTGCGCTCGATGTGCGCCAGCTA
CAGCGGGAGACACGGGCGCTTTTTGCTCATGGGTGGGAGCTGTACCGAGCCCATGGGTTTCCTGC
CGACGAAGTGACGCCGTTCTCGTGTGAAGCTTATGGTCCGTCGCTGGACCGTAGTGACGTTATTC
GAAACGACGCGCTAGGGAACGCGTCGCTGATGGTGCTCGACAACTTGGACCTGTTGTTTGTGTTT
GACCGGTGGGACGACTTGGACGAGATGCTTGCGTACTTGAAGCAGCACCAGCACACCCTTTTTGA
CCAGGATCGTATCGTGCAGGTGTTTGAGTTTCTGATCCGGCTGTT
Found at i:304027 original size:21 final size:21
Alignment explanation
Indices: 304003--304045 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
303993 GCAGCCTCAC
* *
304003 CAGCGTCAGCGGCACTGGCAG
1 CAGCGGCAGCGGCACCGGCAG
*
304024 CAGCGGGAGCGGCACCGGCAG
1 CAGCGGCAGCGGCACCGGCAG
304045 C
1 C
304046 GGGACCGGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.35, G:0.42, T:0.05
Consensus pattern (21 bp):
CAGCGGCAGCGGCACCGGCAG
Left flanking sequence: Indices 303503 -- 304002
AGGCCTCTACCGCTGCCACCTTCCCCGTTGAGCAGCCCGCTATTGAGACCGCTCCCAGAGCTGTT
GAGGCTCGTGACCAGTCTGCTTACAGAACTTTGAGATTGGCCAGATCCGACAAGAAGTACAAGGG
CATCAGAGAGAAGAGAGCTCGTGAGAAGGCTGAGGCTGAAGCCGAGAAGAAGAAGAAGTAAATAC
AAGGGTAGTTACAATAATACGCAATCGGTAAATATGAAATGTATAATAGAAGATTAGCCCGACTT
CCCATACAAAAGAAAAAATTTTCCCGATGATCTTGGACGTATCTGATGAAACTTCAAGATCGATG
CATGGACAATAGTATATGCTATTTGAGTGTATTGATACTAGCGTATTCACGAGGTTATTCAATTA
AAGGTTTCTATTAATATTAAACGAAGTTATTTAATCGAACAAGCCGAACCCCATGTCGTCATCAG
ACTCCTCCTTGGCCTCCTCTTCCTTCTCCTCAGCGGCAGCCTCAC
Right flanking sequence: Indices 304046 -- 304545
GGGACCGGCCTGGACGTTGAAGAACAAGTCCTTCAAGTCCTTACCCTCCAAAGCCTTAGCGTAGA
TCGAGGTCCAGATGGCCTCGACCTCGACACCAGCCTTCTCGGTCAAGGTAGCCAAGTTCTCGGCG
GAGATCTCAACCTCAGCGTCAGCGAGGATCAAAGCGGCGTACGACAAAGCAGTTTCAACGGACAT
GGCAAATAGAACGTAATCAATTTAAGCTATCGCAGACAACGTTATGGGGTATTACTTCGTGCGTT
ACACTGAAAATTTGCGACTTCAACATAGGGTATGGAACCTAACGATCACGTGTTTGAATTCTGAG
AGAAGCCGCACTGATGCGTAGTCGCGACTAAAAAAAAACTCCGAAATTCTCGACTCGCGACGCGT
TTGGAGCCCGCAATTGACAGGGATAATATGATGATACAACCATGCATTCCATTTGACCGCGTCCT
TAGCTGAATCGGCAATCTGGGCCCCAAAAATAGGGATCATGGCTA
Found at i:340209 original size:21 final size:22
Alignment explanation
Indices: 340174--340219 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
340164 ACGCTAGCGT
340174 TGGGTCAGCGGTGGCGTAGATC
1 TGGGTCAGCGGTGGCGTAGATC
*
340196 TGGGTCCG-GGTGGCGTAGATC
1 TGGGTCAGCGGTGGCGTAGATC
340217 TGG
1 TGG
340220 ACTCTGGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.11, C:0.17, G:0.48, T:0.24
Consensus pattern (22 bp):
TGGGTCAGCGGTGGCGTAGATC
Left flanking sequence: Indices 339674 -- 340173
GGTAGATGGGGCAACCCTGATTTAAGGGGTAGAAAAAATATCAGTTGGAAGGTGAACCGCGTTTC
CAGGGTTGGCGAACGCGACGTTTGTTTGTACGAACCCTGTGCCAAGCATCCAACGCCGTGCGAGG
GCAGAAAGATTAGGCGGTTTCCGCTCGCTTCCGTAGCCTAGTTTGTGTCGCGATGACCCTGAGCG
AGTATGCGAAATGATTAACCGCCATCAGCTGGTGGATCAGTTGAGACACGCAAATCTTTTTGGGG
TGGTCGCAAAGTGCTTGGCGTAAGGTACGATCTGCTCTAAAACGTGTGCAACCACGTACTGGGGA
GCCCCGACGCCCCGCGGGAACGAAGATCCCTTTTTTGGTTAAATTAGTTGCGAGGTGCCGTTGCT
CCCCGCGGTGGGTACTCGTGCAATTAGGTTTCAACGTTCGTTTGGGGCTGCACCGTGGGACACAA
AGAGGCTGGTGTTCACGGAAGGCCTAGAAGAGTCTACGCTAGCGT
Right flanking sequence: Indices 340220 -- 340719
ACTCTGGGCCGGCCACGCCTGTCTAGAACGTGTAGAATTACTCAGACATCACTCATCGCTGTTTG
TACGATCAGTGTCTTCTCGCGTACCGACGCCGCCTGGAGCTTGGCAATGACGCCTGACACATTCC
AAGCGACGTCGAGCCGAGGAGGTGTCCCCTACACAGACTAGGGTTTAAAGTTCGAAACTTGACAG
CTGCAGCGGAGATATGTCGAACGATCGTCGCCAGCGGCCAGCGCGGCGTTTATTAACCGAAACGA
TGGAACGTTGATTAGGGAAAATGTCTGCCTGGCGCGAGGCGAAGCAGAGCAGAAGGTCGAGCACG
CCGGGTGGGCTGATGTTTGCCCCGCTGGCCATCGACTACAACGTGACAGATTAACATTTCTTTTC
ATGCACTGTGACCCTCATCGCAGATTATGTTGCAACTGTCCCGGATTATCTTCGGAAAAACTTTT
CGTCACCGCCTGACGCAGCCAACGGAATGCACCTTCCTTGCATCT
Found at i:342845 original size:14 final size:14
Alignment explanation
Indices: 342826--342865 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
342816 ACGTGAAGAG
*
342826 GGGGTGATGAGGAT
1 GGGGTGACGAGGAT
*
342840 GGGGTGACGAGAAT
1 GGGGTGACGAGGAT
342854 GGGGTGACGAGG
1 GGGGTGACGAGG
342866 TTGGTGGTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.23, C:0.05, G:0.57, T:0.15
Consensus pattern (14 bp):
GGGGTGACGAGGAT
Left flanking sequence: Indices 342326 -- 342825
TGCGGCCGTCGTCGCCGTCGTTCACCCTTCCCAACTCGCCGGTGTTGGGCGGGCACCTGGGACTG
AACACCCCGCTCATCCTGGCGTCCAACTCGTTCACCAACTTGCTGCTGTTGTTTATGACGCCGGC
GTTCCCCAACCGCAACCCCACCCCTAATCTGTCCAACCTCCAAACGCCGGTGTTGCTGCCCAACC
TCGAGAAGAAGCTGCTCCACTTTCCCGCGCCGCCGGTGCCGCTTGCGGGCCCCCAGCCGCTCGGG
GGGCTGCACCACGAGAAGTTGCCGAGTTTGCGGTCGCTCAACTTGGACATGCCGTTGACGCTGTT
GCCGGTGATCCGGCTGCGGACGGGCTCGCACAGCGACGGCAAGAGCGGGCAGACCAAGCGGAGCT
TGGAAGAGTGATCTTGGGTTTAATTTGTTTTTTGGGTCGGATTATATAGTGTTTGGATTGTAATA
ATATTAATTAAGCGATATGAGGGAGGGGTGAAGGAACGTGAAGAG
Right flanking sequence: Indices 342866 -- 343365
TTGGTGGTTGATTCCTCGTCAATCGTGATAACCACACAGGTTGTAAGGAGGACTAATTTTGACCA
ATTTACAGGTTGTAAGGAGGTCTAATTTCCTGGCCAATTTGGGATTACTAGAGGAGTGTGATTGG
GTGATTGGCTGGGGCAGGAGTGCGCTGTCGTGTTCTTTGTGGTTTTAAATAGTGTTGATATTCTT
CAATTTAACTGATATTCTTTTACTTTAACTGAAGCTGATGTTTACATAAGCAATAACGGTGTGTG
GGGCAGCGGTGGTGATGGGGATATGTTGGTGGTTGACCATGCGTTGTCGAGCTGATAGCCGTCGT
AAGTAGGTGCTGATATCCACGGTCGTAAAATAGGTTGCTGATCTATTTCAAGTGTATATCCAATG
CTATTCAACACTAGTAAGAACGAAAACATATTGTGGACGGATTAAAAGTGACTAGTGTAAGTAGT
GAGTAGTGTAGTAGGGGATTGCAAGCTTGCTTGCGCTGTCATTTG
Found at i:345330 original size:24 final size:24
Alignment explanation
Indices: 345286--345334 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
345276 AGCAACGACC
* *
345286 GCACAAACGTCCGCTGCAACTGGG
1 GCACAAACGGCCGCAGCAACTGGG
345310 GCACAAACGGCCGCAAG-AACTGGG
1 GCACAAACGGCCGC-AGCAACTGGG
345334 G
1 G
345335 GATCTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.29, C:0.31, G:0.33, T:0.08
Consensus pattern (24 bp):
GCACAAACGGCCGCAGCAACTGGG
Left flanking sequence: Indices 344786 -- 345285
GGCCACCGGGGCCGCCGCCAGCGCCACCACCAACGCCACGATCTGCGCAAGCAACGCCGGGTCGC
CAAAGATGTGCGACGGCGCGTACTTGAGGAACGAGTTGACGGCAAGAATAGAAAACTTGTCGGTG
TCGTTGCCGGGCTTGTCGAGCACCTTGGCCCGCAAGATCAGCGCCGCCTCGTCCGCCAGCACCAC
CTGGGCCACCGCGCCCATCAACTCGGCAAACGCCACCGCGCCAGCGTCGTCGACCTCGGCAATCT
GCTCCTCGACAAGCGCCAACACGCTCGCCTTCAGCGCCTCGGACATGGCGGCGCCCAGCTTCTCC
ACCACCGCCAACATCGCCTGGAGCATCGCGGTCTTGACACCGGCGTCGGTAGCGCCAGCAGCACC
GGCCACGAGCTCGGTCACAAGCGCATCCACCCGCGGCTGGAAGCCAATGAGCGTCCGCAAGCACT
CGACAGCCCGCGCCCGCAACTCGCGCGACAGGTCCAGCAACGACC
Right flanking sequence: Indices 345335 -- 345834
GATCTTGAGCAACAAGTTGTTGAGCGCGTGCAAGATGGCCACCTTGACGGGCGCCGCCACCTTCT
CGCCCACCACGCGGATAAGCGGGCCGGTGATGGTGGTGGCAAACGGCTTGAGCAGCGCCGCGGGC
GTCTTGGAGATGACGTCGGCCATCCCGCGCGCCAGCATCTCCTTGGCGTCCGCCAGCCCGTACAT
GAGCCCGTGCGAGAACACGGGCAACACCGCGGCGGGGCCCTTGGGAAGCGCGAACCCGGCGAGGT
CCTCGCCCGCCACCCCCGTCAACTCCAACGCCTGGAAGGTGGGCTTGATCAACCGGCCAAGCTGC
TCCTTGGGCTGCGCCTTGACGAGCGCCACCAACGCCGCGTGGGTCGCCGCCACCACCTGGGGGTC
CTTGTCGCCCAACGAGAGCACAAACTGGCCCACGAGGTCGGCGGTGTACTGCGAGTAGTTGAGGG
TGGTGTGGGCAAAGAACGGGCCGCACCGCGCGTAGATGACGGCGC
Found at i:350080 original size:9 final size:9
Alignment explanation
Indices: 350054--350083 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
350044 GAAGCACAAA
*
350054 CGCCACCAA
1 CGCCACCAC
350063 CGCCACCAC
1 CGCCACCAC
350072 CGCCACCAC
1 CGCCACCAC
350081 CGC
1 CGC
350084 GGCGTGGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.23, C:0.63, G:0.13, T:0.00
Consensus pattern (9 bp):
CGCCACCAC
Left flanking sequence: Indices 349554 -- 350053
AGCGCGAGGTAGCGGGCCACGGGCTCGTCGCCAAACACCGCGGCCGAGCCCGGGTGGCGGGCGAG
CGCAAGCACCGCCGGCACCGCCCACGCGTACCAGTGGCCCACGCCGTTGTCGACGTTGAGCCGCG
CCGTGGCCAAGAGCTCGCCCACCACCGCCAACACCGTCAACCCGCGCTGGCGGGTGGCCTCGACC
TCGGCGCGGACCTCGGCCTCGCGCGCCACCTGCGCCTTCTGCGCCGCCTGCTCGTCGCGGGTGAG
CGTCTTCTTCTTCTTGAGCTCCTTCTTGAGCAGCGCCTCCCACTGCTGGGTCTCGTAGTCGCGCA
GGTTCTTGTCGGCCTGCTTCTCCGGCGCGGTCACGTCGACGAACGGCTCGTCGCCGCGGTGGCGC
CAGATGCCGATGGTCGTCGCGTCGTACGCGTCGAGCCGGGCCGTCACCGCCGCGAGCTCGGCCCG
GAGCACCGCCACCACCGCGGGCGCCACCGGCTCGGGAAGCACAAA
Right flanking sequence: Indices 350084 -- 350583
GGCGTGGTTCAAGCTGCCGGCAACGAACTCGCGCAGCCGCGCCACCAACGCCGCCACCACCGCCT
CGTGGTGCTCGAGCACCACCGCCGCGATGTCGTGCGCCGCCGTCAGCCGCTGCATCAACCCGATC
CACCCGCCGGTGACCTTGACCGCCGGGTGGTTCGCCACCACCAACAGCCGGAGCGCCGCCTGCTC
GGCCACCGCGGGGTCCGCCACCTGGGTGAGCGCCGCCAACACCGGCGGCACCAACCGCGGCTGGG
TGGCCATCTCGGGCACCGGGTGCACCACCGCGGCCTCCACGGCGTCGCCCACCGCCGCCACCAAG
CCCGGCCGGGTGTCGAGCAACCGCAGGAGCGCCGCCACCGCCGCCAACCGCTCGGGATACCCCAC
CAGCGCCAGCGTGGCCAACCACACCCACGCGGCGGCGTACTCGGGCGCCACCGAGTCCACACCGG
CGAGCGCGCGGGTGTACTGGGCCACCTCGGGCCCGGCGAGCTTGG
Found at i:352080 original size:14 final size:14
Alignment explanation
Indices: 352061--352087 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
352051 GCAATGGGAA
352061 AACGAAGGGTGGGG
1 AACGAAGGGTGGGG
352075 AACGAAGGGTGGG
1 AACGAAGGGTGGG
352088 ATGGGAGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.56, T:0.07
Consensus pattern (14 bp):
AACGAAGGGTGGGG
Left flanking sequence: Indices 351561 -- 352060
CCGCGGTGGATGCGGTGCAAGTGCTTCAGGGTGCGGCCGGCGGTGTGGGAAAGCGCGCCGTCCAC
CACCGCGGCGTGGGCCTCGGCCGCGGCCGCCGCATTGGGGGCACGGGCCAAGAACTGGTTGATCC
AGTGCAACAACGTCAAGTAGGAGGTGATGGCCAAGTGGCGGTGGGCGCACTCGGCGACGAACGCG
AAGAGCGCGGCCACCACCGAGGCGTCTGTGGCGGCCAACGCCTCGAGGGTGTCCACCACCAGGTT
GCGCAGCTGGGGGTCGACGTAGTAGCTGTAGGTGCCTAGGAGGAGCTCGACGACGTCGGGGAGCC
ACTGCGGGTCGGGCGGCGCGGGGGCGAGGTCGCGCACCCGCCTGAGCGCGTCCAAGCGTGTTTTG
GTGTGCGACGAGTAGATCTGTCGCTTCATTGCGGGCCGTTCGTCTGCCCACGTCGATGTCATGTT
GGACTGAAATTTTTCACCGGTGCTAATGAGTGCGAGCAATGGGAA
Right flanking sequence: Indices 352088 -- 352587
ATGGGAGGTATGGGGGTGCAATGGGAGTGGGAGGGGGTGGAAGTGGGATGGGAAGAGGGTGATTG
AGGCTTGGGGGTGGTTTGGTTTGGGTGTAGCAGTGGTGGGGGGTGGGAGTTGGTGGGATGGTGTG
GGTGGTTGGGGTTATGAGCTTGGACAGATCCGATCATAAGCGAGAAGGTGGAGGGGTGGGGATGG
GGAATGGAGAGGGGGTAATTGGGGATTGGATGGGTCGAGGATGGGTTTGGTTAAGCTGGGTTAAG
CAGTGGGTGGGATACTGTGTGGGTAGTTTGGGATATGAGCAAGGACAGATCCGATACGAGGAAAC
GAAAGGAAACGGTGAAGTGGGGGATGGAGAAGGGGGTGGGCAAAAATTAATTGTGGCTTGGGGTT
TGGGGTTGGTTTGGTTTGGGCTGGATTGTAGCAGTGGATGCGTTGGTGGAATGCTTTGTGGAAGT
TTGGGTTATGAGCAATGACAGATCCGATCATAAGCGAGAAGAGTG
Found at i:352125 original size:21 final size:21
Alignment explanation
Indices: 352099--352140 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
352089 TGGGAGGTAT
352099 GGGGGTGCAA-TGGGAGTGGGA
1 GGGGGTGCAAGTGGGA-TGGGA
*
352120 GGGGGTGGAAGTGGGATGGGA
1 GGGGGTGCAAGTGGGATGGGA
352141 AGAGGGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.19, C:0.02, G:0.64, T:0.14
Consensus pattern (21 bp):
GGGGGTGCAAGTGGGATGGGA
Left flanking sequence: Indices 351599 -- 352098
GGCGGTGTGGGAAAGCGCGCCGTCCACCACCGCGGCGTGGGCCTCGGCCGCGGCCGCCGCATTGG
GGGCACGGGCCAAGAACTGGTTGATCCAGTGCAACAACGTCAAGTAGGAGGTGATGGCCAAGTGG
CGGTGGGCGCACTCGGCGACGAACGCGAAGAGCGCGGCCACCACCGAGGCGTCTGTGGCGGCCAA
CGCCTCGAGGGTGTCCACCACCAGGTTGCGCAGCTGGGGGTCGACGTAGTAGCTGTAGGTGCCTA
GGAGGAGCTCGACGACGTCGGGGAGCCACTGCGGGTCGGGCGGCGCGGGGGCGAGGTCGCGCACC
CGCCTGAGCGCGTCCAAGCGTGTTTTGGTGTGCGACGAGTAGATCTGTCGCTTCATTGCGGGCCG
TTCGTCTGCCCACGTCGATGTCATGTTGGACTGAAATTTTTCACCGGTGCTAATGAGTGCGAGCA
ATGGGAAAACGAAGGGTGGGGAACGAAGGGTGGGATGGGAGGTAT
Right flanking sequence: Indices 352141 -- 352640
AGAGGGTGATTGAGGCTTGGGGGTGGTTTGGTTTGGGTGTAGCAGTGGTGGGGGGTGGGAGTTGG
TGGGATGGTGTGGGTGGTTGGGGTTATGAGCTTGGACAGATCCGATCATAAGCGAGAAGGTGGAG
GGGTGGGGATGGGGAATGGAGAGGGGGTAATTGGGGATTGGATGGGTCGAGGATGGGTTTGGTTA
AGCTGGGTTAAGCAGTGGGTGGGATACTGTGTGGGTAGTTTGGGATATGAGCAAGGACAGATCCG
ATACGAGGAAACGAAAGGAAACGGTGAAGTGGGGGATGGAGAAGGGGGTGGGCAAAAATTAATTG
TGGCTTGGGGTTTGGGGTTGGTTTGGTTTGGGCTGGATTGTAGCAGTGGATGCGTTGGTGGAATG
CTTTGTGGAAGTTTGGGTTATGAGCAATGACAGATCCGATCATAAGCGAGAAGAGTGTAGATGTG
GTGGAGATATGGTAGTACGGGGTAAAAGGATGCGTGAAATGATGC
Found at i:352147 original size:22 final size:21
Alignment explanation
Indices: 352101--352148 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
352091 GGAGGTATGG
*
352101 GGGTGCAATGGGAGTGGGAGG
1 GGGTGCAATGGGAGTGGGAGA
*
352122 GGGTGGAAGTGGGA-TGGGAAGA
1 GGGTGCAA-TGGGAGTGGG-AGA
352144 GGGTG
1 GGGTG
352149 ATTGAGGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.21, C:0.02, G:0.62, T:0.15
Consensus pattern (21 bp):
GGGTGCAATGGGAGTGGGAGA
Left flanking sequence: Indices 351601 -- 352100
CGGTGTGGGAAAGCGCGCCGTCCACCACCGCGGCGTGGGCCTCGGCCGCGGCCGCCGCATTGGGG
GCACGGGCCAAGAACTGGTTGATCCAGTGCAACAACGTCAAGTAGGAGGTGATGGCCAAGTGGCG
GTGGGCGCACTCGGCGACGAACGCGAAGAGCGCGGCCACCACCGAGGCGTCTGTGGCGGCCAACG
CCTCGAGGGTGTCCACCACCAGGTTGCGCAGCTGGGGGTCGACGTAGTAGCTGTAGGTGCCTAGG
AGGAGCTCGACGACGTCGGGGAGCCACTGCGGGTCGGGCGGCGCGGGGGCGAGGTCGCGCACCCG
CCTGAGCGCGTCCAAGCGTGTTTTGGTGTGCGACGAGTAGATCTGTCGCTTCATTGCGGGCCGTT
CGTCTGCCCACGTCGATGTCATGTTGGACTGAAATTTTTCACCGGTGCTAATGAGTGCGAGCAAT
GGGAAAACGAAGGGTGGGGAACGAAGGGTGGGATGGGAGGTATGG
Right flanking sequence: Indices 352149 -- 352648
ATTGAGGCTTGGGGGTGGTTTGGTTTGGGTGTAGCAGTGGTGGGGGGTGGGAGTTGGTGGGATGG
TGTGGGTGGTTGGGGTTATGAGCTTGGACAGATCCGATCATAAGCGAGAAGGTGGAGGGGTGGGG
ATGGGGAATGGAGAGGGGGTAATTGGGGATTGGATGGGTCGAGGATGGGTTTGGTTAAGCTGGGT
TAAGCAGTGGGTGGGATACTGTGTGGGTAGTTTGGGATATGAGCAAGGACAGATCCGATACGAGG
AAACGAAAGGAAACGGTGAAGTGGGGGATGGAGAAGGGGGTGGGCAAAAATTAATTGTGGCTTGG
GGTTTGGGGTTGGTTTGGTTTGGGCTGGATTGTAGCAGTGGATGCGTTGGTGGAATGCTTTGTGG
AAGTTTGGGTTATGAGCAATGACAGATCCGATCATAAGCGAGAAGAGTGTAGATGTGGTGGAGAT
ATGGTAGTACGGGGTAAAAGGATGCGTGAAATGATGCGTGTGCCA
Found at i:352798 original size:12 final size:13
Alignment explanation
Indices: 352766--352803 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
352756 GTCGAGCGCT
*
352766 TCTCTTCACAATG
1 TCTCTCCACAATG
*
352779 TATCTCCACAATG
1 TCTCTCCACAATG
352792 -CTCTCCACAATG
1 TCTCTCCACAATG
352804 GCTTATCGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.26, C:0.34, G:0.08, T:0.32
Consensus pattern (13 bp):
TCTCTCCACAATG
Left flanking sequence: Indices 352266 -- 352765
TGGAGGGGTGGGGATGGGGAATGGAGAGGGGGTAATTGGGGATTGGATGGGTCGAGGATGGGTTT
GGTTAAGCTGGGTTAAGCAGTGGGTGGGATACTGTGTGGGTAGTTTGGGATATGAGCAAGGACAG
ATCCGATACGAGGAAACGAAAGGAAACGGTGAAGTGGGGGATGGAGAAGGGGGTGGGCAAAAATT
AATTGTGGCTTGGGGTTTGGGGTTGGTTTGGTTTGGGCTGGATTGTAGCAGTGGATGCGTTGGTG
GAATGCTTTGTGGAAGTTTGGGTTATGAGCAATGACAGATCCGATCATAAGCGAGAAGAGTGTAG
ATGTGGTGGAGATATGGTAGTACGGGGTAAAAGGATGCGTGAAATGATGCGTGTGCCATCTGTAA
GCGATACTATGTGCGATTGGATGGTATGTGTAGTTACCGTATTTTTGGCGTATTCTCCACATTTG
GTATATATTTTACGAAATGACAATATGTAATCGGAGTCGAGCGCT
Right flanking sequence: Indices 352804 -- 353303
GCTTATCGTACTACCAGTATTTAATTGCACCAGATGCCCAACCAGAGGTCCGTCCCACGCACCAC
TACAACCCGTTCCATCCACCACCCGGTAGTTGTGGTCCGGCTCTGCCCCAGTTCTGGCTTGGTCT
CAACCATAGTCCGCAGCTTGACCCAAGTGTAGACCCACCTAAACCTCCTACTGGCAATTGCGCAA
TACTCTATCCCGTTCAGCCCATCAACCCCCTTCGAACTCCGAGCTAAGCCCAGTCAAATCCAATA
TGATCCACAGTACCCACCAAGAAAGCGGTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCCCCAGC
TGGTACCTCGTTCTTCGCACCTTACCGCTAGAAAGACTTCGAATGCTAGTTTTACACCTCATCCC
ATTCAATGCTACTTTACACTCCCACACCACTTGGCTTATTTGATCAAATCTGGTTTCGATGAAAA
TCACCGAGCACTACCAGCCAGACTATGCTGATCCTTGAAGAATTG
Found at i:353531 original size:13 final size:13
Alignment explanation
Indices: 353513--353537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
353503 CACCCACCTC
353513 GTTTTCCACCTAA
1 GTTTTCCACCTAA
353526 GTTTTCCACCTA
1 GTTTTCCACCTA
353538 CCGCCTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.08, T:0.40
Consensus pattern (13 bp):
GTTTTCCACCTAA
Left flanking sequence: Indices 353013 -- 353512
CAGCCCATCAACCCCCTTCGAACTCCGAGCTAAGCCCAGTCAAATCCAATATGATCCACAGTACC
CACCAAGAAAGCGGTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCCCCAGCTGGTACCTCGTTCT
TCGCACCTTACCGCTAGAAAGACTTCGAATGCTAGTTTTACACCTCATCCCATTCAATGCTACTT
TACACTCCCACACCACTTGGCTTATTTGATCAAATCTGGTTTCGATGAAAATCACCGAGCACTAC
CAGCCAGACTATGCTGATCCTTGAAGAATTGATCATAGCTGAAATCCAAGACTGCCCGGCCCCAC
TAACACCACCTCATGTCACGTGACTGCCAAGCCAAAACACCTACAGAAGTACCTACCCGACCTAC
CGCCTCCCACGTCCCCCACACCTTCGAAGATCATCCGTACGAGTTCGTACGTGTCGTCACGATTT
TTTCTGCTCACCACCTACGTCCGCCCACCTGTTTGCACCCACCTC
Right flanking sequence: Indices 353538 -- 354037
CCGCCTCGTTACCCGGACCTCCACTATATAAACCGCGCGACCGCAACATTTTTTTTTCTTTGAAC
TATAACAGGTGATGAAGAGAGGTATAAACCGTTGCAGTACGGCCGAACCCGCCCGGCGGGGGACG
CGCTACTCAGATCTGTTTCTGGGCGCTGTGGAAACACCGCTGCCTTCACCACTCCAAGCGGTGGA
ATTGTCTGAGCCTGCCTATAGTTCCGCGTAGATTAGGCATAATTTTTCGGAGTAAAGGAAGGGTA
ATTCCGTTGCGCCCCCACCCGGGGTCTGGTCCCCCGCATTCGCTAGAGATCCCCGTGAATTTTCT
GTCACGGGTCTGCGTTTGGCGCCCGCCTGCAGCCCAGCCTTAATTCCAGACTAGGGAACCCCACT
TTGAGGCTTATATCGCAAACCCCCGTAGGGCGCCTGGCTATCTCCGAATGATCCATGGTATTAGC
ACCGTCTAGGTGACAATAAATAAATAGTAGATAAATAATTCCCAA
Found at i:356071 original size:12 final size:12
Alignment explanation
Indices: 356051--356101 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
356041 ATACTGTTAG
356051 AACCTAGTTATC
1 AACCTAGTTATC
* *
356063 AATCTAGTTGTC
1 AACCTAGTTATC
*
356075 AACCTAGTT-CC
1 AACCTAGTTATC
* *
356086 CACCTAGTTCTC
1 AACCTAGTTATC
356098 AACC
1 AACC
356102 ATTAGTTTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
11 9 0.29
12 22 0.71
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.31
Consensus pattern (12 bp):
AACCTAGTTATC
Left flanking sequence: Indices 355551 -- 356050
TCAGGCCCGGACCCACACCCACTATCCGGCACCACTGCCGCCCCCGGTGACTAAGTAATTATATT
ACCCCACTCGAAGTGCCACCTCAATTAAGGTTGCGATTTTTAGTCGAGGTTGCATTTGGCAAAGA
AAAAAACGGTCCACTTCTGTCAGCTGTGCCAAGACAAGCAAGTGACTCCGAACGAAGATTCGTGC
AGTCGCTGAGATGACGGGTTGCTGATCGTGTAGTTGCTCGTAACCGGTACCCCGTGACGGAGAGG
CTGGATCAAGGATCGAAAGGATCGCTTCACACAGTGGCACCACGTTATGTGGCTACGATGAATAA
CGGTTTCCGAAAAGAGATGCGTGGACGGTTTCTCGGGGCTAAGGGCGGGCGAAAATCTGTCACTT
GGCACGTCAAAAGGCGGCGCCAGTGCCAAGTGAAATGCCACCCACACGAGCGGGAGTAAGAAGGG
CAATGTCGTATCTATCTACAGTCAAGGAACCTAGTATACTGTTAG
Right flanking sequence: Indices 356102 -- 356601
ATTAGTTTTCTTTTATCGTTATTAACAGCTTAGTACTCTCGTTTTTGTCTCGTTCGTCTCGTTCG
TCTCGTTGTCTCGTTTTTCTCGTTTTCTCATTACCGTCTCTTTTCATCTCTCTCTTTCTTCTCTT
TTCCCTGTGCAAACGCGCACCGAAGACCGCGCGATCTGTGTTTACTATTCGCAGGACTCATCTTA
ACGCGTCATCCATCCATGGCCAACAACCTTGCGGTGCATCGCAAGTGGATGGATGAGACAAAACC
CATGATCCCCAACCCCGCCCACATAGCCTTCGTGTCCAAGGTGTACCCAGCGCTGGCGCTGGCTC
CGCGAAGCTCGCTAGTCGCGTCTACGCCACCAGCAGACAGCCCTCGCACCGCGAGACTGCCAGTG
ATCGATCTCACCCAGGAGGAGGCCGCGGGGACCAAGCGCCCGGCCGAGCGCCCGCTACCAGCGCC
CGCAGCCAAGCGGGCCCCACCGCCCCTCCAGACCGCGAAGAAGCA
Found at i:356179 original size:17 final size:17
Alignment explanation
Indices: 356148--356195 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
356138 TCTCGTTTTT
356148 GTCTCGTTCGTCTCGTTC
1 GTCTCGTT-GTCTCGTTC
*
356166 GTCTCGTTGTCTCGTTT
1 GTCTCGTTGTCTCGTTC
* *
356183 TTCTCGTTTTCTC
1 GTCTCGTTGTCTC
356196 ATTACCGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.00, C:0.29, G:0.19, T:0.52
Consensus pattern (17 bp):
GTCTCGTTGTCTCGTTC
Left flanking sequence: Indices 355648 -- 356147
GCGATTTTTAGTCGAGGTTGCATTTGGCAAAGAAAAAAACGGTCCACTTCTGTCAGCTGTGCCAA
GACAAGCAAGTGACTCCGAACGAAGATTCGTGCAGTCGCTGAGATGACGGGTTGCTGATCGTGTA
GTTGCTCGTAACCGGTACCCCGTGACGGAGAGGCTGGATCAAGGATCGAAAGGATCGCTTCACAC
AGTGGCACCACGTTATGTGGCTACGATGAATAACGGTTTCCGAAAAGAGATGCGTGGACGGTTTC
TCGGGGCTAAGGGCGGGCGAAAATCTGTCACTTGGCACGTCAAAAGGCGGCGCCAGTGCCAAGTG
AAATGCCACCCACACGAGCGGGAGTAAGAAGGGCAATGTCGTATCTATCTACAGTCAAGGAACCT
AGTATACTGTTAGAACCTAGTTATCAATCTAGTTGTCAACCTAGTTCCCACCTAGTTCTCAACCA
TTAGTTTTCTTTTATCGTTATTAACAGCTTAGTACTCTCGTTTTT
Right flanking sequence: Indices 356196 -- 356695
ATTACCGTCTCTTTTCATCTCTCTCTTTCTTCTCTTTTCCCTGTGCAAACGCGCACCGAAGACCG
CGCGATCTGTGTTTACTATTCGCAGGACTCATCTTAACGCGTCATCCATCCATGGCCAACAACCT
TGCGGTGCATCGCAAGTGGATGGATGAGACAAAACCCATGATCCCCAACCCCGCCCACATAGCCT
TCGTGTCCAAGGTGTACCCAGCGCTGGCGCTGGCTCCGCGAAGCTCGCTAGTCGCGTCTACGCCA
CCAGCAGACAGCCCTCGCACCGCGAGACTGCCAGTGATCGATCTCACCCAGGAGGAGGCCGCGGG
GACCAAGCGCCCGGCCGAGCGCCCGCTACCAGCGCCCGCAGCCAAGCGGGCCCCACCGCCCCTCC
AGACCGCGAAGAAGCAGAGCACCCTCCAGTTCCCGATCCCCGCCACCCAGTCCCAGGCACGCTCG
GTCACCACCGACTCCATTGTCATCGACGACGAGCCCAACTCCGCG
Found at i:356187 original size:9 final size:9
Alignment explanation
Indices: 356145--356195 Score: 61
Period size: 9 Copynumber: 5.9 Consensus size: 9
356135 TACTCTCGTT
356145 TTTGTCTCG
1 TTTGTCTCG
*
356154 TTCGTCTCG
1 TTTGTCTCG
*
356163 TTCGTCTCG
1 TTTGTCTCG
356172 -TTGTCTCG
1 TTTGTCTCG
*
356180 TTTTTCTCG
1 TTTGTCTCG
356189 TTT-TCTC
1 TTTGTCTC
356196 ATTACCGTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
8 11 0.29
9 27 0.71
ACGTcount: A:0.00, C:0.27, G:0.18, T:0.55
Consensus pattern (9 bp):
TTTGTCTCG
Left flanking sequence: Indices 355645 -- 356144
GTTGCGATTTTTAGTCGAGGTTGCATTTGGCAAAGAAAAAAACGGTCCACTTCTGTCAGCTGTGC
CAAGACAAGCAAGTGACTCCGAACGAAGATTCGTGCAGTCGCTGAGATGACGGGTTGCTGATCGT
GTAGTTGCTCGTAACCGGTACCCCGTGACGGAGAGGCTGGATCAAGGATCGAAAGGATCGCTTCA
CACAGTGGCACCACGTTATGTGGCTACGATGAATAACGGTTTCCGAAAAGAGATGCGTGGACGGT
TTCTCGGGGCTAAGGGCGGGCGAAAATCTGTCACTTGGCACGTCAAAAGGCGGCGCCAGTGCCAA
GTGAAATGCCACCCACACGAGCGGGAGTAAGAAGGGCAATGTCGTATCTATCTACAGTCAAGGAA
CCTAGTATACTGTTAGAACCTAGTTATCAATCTAGTTGTCAACCTAGTTCCCACCTAGTTCTCAA
CCATTAGTTTTCTTTTATCGTTATTAACAGCTTAGTACTCTCGTT
Right flanking sequence: Indices 356196 -- 356695
ATTACCGTCTCTTTTCATCTCTCTCTTTCTTCTCTTTTCCCTGTGCAAACGCGCACCGAAGACCG
CGCGATCTGTGTTTACTATTCGCAGGACTCATCTTAACGCGTCATCCATCCATGGCCAACAACCT
TGCGGTGCATCGCAAGTGGATGGATGAGACAAAACCCATGATCCCCAACCCCGCCCACATAGCCT
TCGTGTCCAAGGTGTACCCAGCGCTGGCGCTGGCTCCGCGAAGCTCGCTAGTCGCGTCTACGCCA
CCAGCAGACAGCCCTCGCACCGCGAGACTGCCAGTGATCGATCTCACCCAGGAGGAGGCCGCGGG
GACCAAGCGCCCGGCCGAGCGCCCGCTACCAGCGCCCGCAGCCAAGCGGGCCCCACCGCCCCTCC
AGACCGCGAAGAAGCAGAGCACCCTCCAGTTCCCGATCCCCGCCACCCAGTCCCAGGCACGCTCG
GTCACCACCGACTCCATTGTCATCGACGACGAGCCCAACTCCGCG
Found at i:356913 original size:12 final size:12
Alignment explanation
Indices: 356892--356939 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
356882 GGCATCGACA
*
356892 GCATCGACACCG
1 GCATCAACACCG
*
356904 GCATCAACACTG
1 GCATCAACACCG
*
356916 GCATCAACACTG
1 GCATCAACACCG
356928 GCATCAACACCG
1 GCATCAACACCG
356940 TGCGCGAGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.31, C:0.38, G:0.19, T:0.12
Consensus pattern (12 bp):
GCATCAACACCG
Left flanking sequence: Indices 356392 -- 356891
CGTGTCCAAGGTGTACCCAGCGCTGGCGCTGGCTCCGCGAAGCTCGCTAGTCGCGTCTACGCCAC
CAGCAGACAGCCCTCGCACCGCGAGACTGCCAGTGATCGATCTCACCCAGGAGGAGGCCGCGGGG
ACCAAGCGCCCGGCCGAGCGCCCGCTACCAGCGCCCGCAGCCAAGCGGGCCCCACCGCCCCTCCA
GACCGCGAAGAAGCAGAGCACCCTCCAGTTCCCGATCCCCGCCACCCAGTCCCAGGCACGCTCGG
TCACCACCGACTCCATTGTCATCGACGACGAGCCCAACTCCGCGGTGGTGGCCGCGTTGACCGAG
CTCGTCAAGCTCCAGGACTCGAAGATGGCGCTCCTCGAAGAGGGGTTCAACACCTACAAAAGCAC
CTCGATCTCCGACGACCGCAAAAAGGAGTGGGTCCACCAGGTGTACAACCCGAAAATTGAAAAGA
TTAACGCAGACATCGCCCGGTGTCGCGCCAACGCAGGCATCGACA
Right flanking sequence: Indices 356940 -- 357439
TGCGCGAGTCCATCGCTGAGGTGGTCGAAGACGTGGTTCCCGACTCGCCGCTGTCGTGGCTGAGC
TTCGACGACATCGACCCCACCGCGCTCGTGGAAGCTACGCCGGTCGCAGCCTACCAAGCGCCCGC
CCCGCTGCACCCCAAAACGGTGGACCCCATCGACGACAACGAGCTCGAGGACGAGTTTGGCGAGC
TGTACCTCGACGGTATGCACACGCCCGAGCACGAGCGCAACGAGGTGAACGACTTGGGCCTGTTT
ATTGCCACCCAGGAGCTGGAGGCCGACCGCACCTACCACGACGACCCGCTGGACGACGACCTGAT
CGAGCCCACGGTGGCGGCCATCGAGGTGTTGAGCGACTGCAGCGACGAGGAGATCGAAGAGCTCC
CCACCCAGCTCCACGACGAGCGCGAGGACGCCAACGAGGTGATCGAAATCAGCGACGTTGACAGC
GACGACGAGCCCATGATGCCGGTAGCACCCATCAAGCGAGAACCG
Found at i:373520 original size:15 final size:15
Alignment explanation
Indices: 373502--373550 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
373492 GGGTTGGCGG
373502 CAGCACCAGCAGCCC
1 CAGCACCAGCAGCCC
* * *
373517 CAGCGCCACCAGCAC
1 CAGCACCAGCAGCCC
**
373532 CAGCACCAGTGGCCC
1 CAGCACCAGCAGCCC
373547 CAGC
1 CAGC
373551 GTTGCTGGAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.24, C:0.51, G:0.22, T:0.02
Consensus pattern (15 bp):
CAGCACCAGCAGCCC
Left flanking sequence: Indices 373002 -- 373501
GTGAAAAAGTAACGCCTCTCACGGTTTTATTGACATTTATCCCATGGTTTGAAACTCATGTGGTT
CGGCCGATGCACCCGTCTTGATATTATAAGTGCGGGTCATGGCTCGATTCTTCTTGCATACCTTC
TCCATTTGCATCGTTTTGCGCAATTGTATAAGTCTTTATAAGTTAATTACACGACATGAAACTGA
TTAGTGCCCCGGGTGGATCCGTGGGATGGGTGAGGAATGGCTGTTTGTTGTTATTATACAACACG
CGATATACATTTAGCCTCCACGCAACAAGTAGTCGATGGCCCCCTGGACGTTGCCGTTGGCGACG
GTGAGCGCCACCACGTTGATGGCCGGGTCTACGAACCCCATGTCGTTCAACGTCTGCAACTGGGT
GGCCCACTTCTCCTCCGGGGGACGGCTGTCGGCGGGAGCACCGCCAAAGCCTCCCAAGCCACCAA
GGCCGCCCATGCCACCGCCAAACAACTGGGCAAACGGGTTGGCGG
Right flanking sequence: Indices 373551 -- 374050
GTTGCTGGATGTGTCAGAAGTAGAGTTTGTAGGAGCGCCCGCACCACCGGCCTCGCCCGATTCCG
CCACGCTCCCGGGAGCAGGGAACCCGGAGGCAGCGCCCGCACCGGCACCAGCACCACCAAACAAG
TTGCCCATGCCGCCCATGCCGCCCATGCCACCGCCCATCTCGCGGCTCATGTCCATCATCGACCG
CATCATCTCGGGGTTCAGCATCATTTGGCGGAAGAACGGCAGCTGCATCATTGAGCGCATTTGCG
GAGCCATGGCCCGCAACTGTGGGTTCTGCTGGAACATAAACTCCATCATCTGCGGGTCGTTGAGC
ATGGCGTTCATCTGTTCCTGGAACATGGGCAGCAGCATCATCTGCGTCAACTGGTCGGGATCGGG
CATGCCCAGGTTCATGCCGCCGTCGGGCCCAAACATCAGCGCCGACGGCAACGTGGGGCCAAAGC
CCGCGTAGCGAGCACCCGTCAAGTCCGCCAACGGGTTATACGAGC
Found at i:373697 original size:9 final size:9
Alignment explanation
Indices: 373683--373709 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
373673 CAAACAAGTT
373683 GCCCATGCC
1 GCCCATGCC
373692 GCCCATGCC
1 GCCCATGCC
373701 GCCCATGCC
1 GCCCATGCC
373710 ACCGCCCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.56, G:0.22, T:0.11
Consensus pattern (9 bp):
GCCCATGCC
Left flanking sequence: Indices 373183 -- 373682
CGACATGAAACTGATTAGTGCCCCGGGTGGATCCGTGGGATGGGTGAGGAATGGCTGTTTGTTGT
TATTATACAACACGCGATATACATTTAGCCTCCACGCAACAAGTAGTCGATGGCCCCCTGGACGT
TGCCGTTGGCGACGGTGAGCGCCACCACGTTGATGGCCGGGTCTACGAACCCCATGTCGTTCAAC
GTCTGCAACTGGGTGGCCCACTTCTCCTCCGGGGGACGGCTGTCGGCGGGAGCACCGCCAAAGCC
TCCCAAGCCACCAAGGCCGCCCATGCCACCGCCAAACAACTGGGCAAACGGGTTGGCGGCAGCAC
CAGCAGCCCCAGCGCCACCAGCACCAGCACCAGTGGCCCCAGCGTTGCTGGATGTGTCAGAAGTA
GAGTTTGTAGGAGCGCCCGCACCACCGGCCTCGCCCGATTCCGCCACGCTCCCGGGAGCAGGGAA
CCCGGAGGCAGCGCCCGCACCGGCACCAGCACCACCAAACAAGTT
Right flanking sequence: Indices 373710 -- 374209
ACCGCCCATCTCGCGGCTCATGTCCATCATCGACCGCATCATCTCGGGGTTCAGCATCATTTGGC
GGAAGAACGGCAGCTGCATCATTGAGCGCATTTGCGGAGCCATGGCCCGCAACTGTGGGTTCTGC
TGGAACATAAACTCCATCATCTGCGGGTCGTTGAGCATGGCGTTCATCTGTTCCTGGAACATGGG
CAGCAGCATCATCTGCGTCAACTGGTCGGGATCGGGCATGCCCAGGTTCATGCCGCCGTCGGGCC
CAAACATCAGCGCCGACGGCAACGTGGGGCCAAAGCCCGCGTAGCGAGCACCCGTCAAGTCCGCC
AACGGGTTATACGAGCCGGATCCGGCAGCAATGTTGGTGGGGGCGGCGGGCGCCGGGGAAGTGGA
GGAGGCGGCGGGGGTGGCGGACGAGGTCTTGGCGGCGCTCTTGACCAAGTGGATGGTGTGGCCCG
AGCTCACCTTGTACAGCTCGACCGTCTGGTCATCCTTGAGCACTT
Found at i:424364 original size:24 final size:23
Alignment explanation
Indices: 424337--424404 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 23
424327 TCCCATGCCA
*
424337 GGGCAGCCGATGCAACAACCGCAC
1 GGGCAACC-ATGCAACAACCGCAC
424361 GGGCAACCATTGCAACAACCGCAC
1 GGGCAACCA-TGCAACAACCGCAC
* * *
424385 GGTCATCCTATGCCACAACC
1 GGGCAACC-ATGCAACAACC
424405 TCCACATGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 36 0.95
25 1 0.03
ACGTcount: A:0.29, C:0.38, G:0.22, T:0.10
Consensus pattern (23 bp):
GGGCAACCATGCAACAACCGCAC
Left flanking sequence: Indices 423837 -- 424336
GTTTCCGCGACCCCTTCTGGCTCACGAGTCCTGAGAATATACCCTACTACCTCAGTTCGCCTTCA
GAGGAGGCAACTCCAGGTAGTGGCCACGGGAGTGGCGTTCTGGGCGCAGACAACCCTTATGCCAG
TGGCAATCTGGGTCCGGACAAACAGTACAATGATGGTCAAGACGTTATGTCATTGCAATCGCTGT
CTCTCCCGCCAGATGGGCCCCTTCCACCAGACTACCTGTCTGGGGGTTACGAAAGCCAGTACTCC
CAGCAGCCTCTGGGGTGGAATCTCACTCCGGACCAATACTTTCAAAATCCTCCTCCACCTCTTCC
ATCTCACCACGAGTATCAGCCCTACGCCTATTTGCCCCGTCAGCAGCTGAACGGTCCCGGTATGC
CTTCTGGTGGTGTTCCTCCCGAGCATGAATTCCACGCAGGCCAACCACCGATACCCCCTCACCAC
CAAATTCCTATTCACCCTCCGCAACCGGGTCAACCTCCCATGCCA
Right flanking sequence: Indices 424405 -- 424904
TCCACATGGACATCCTATGCAACAGCACCCAATGCACATGGGTCCTGGCCTACTTCCACCTGACC
AACCTCCTGGCGGTCAAGTGCGGTTGAATGAGCGGTTGGAGCAACACCAACATTATCCACCGCCC
ACCGGACAACAGAGCCCTCCAAATCCACCACCTCAATAGACTGTATGTTATAATTACAATAGACG
TTCCCGACCTCCAATTACCCTTGGTATCCGGAGTCCCCGCTTTCCCCACATTGTTAGGCGCGTTT
CGCAGCTCACGTGACCCAGCGGCCCGGTCGCTAACGATCAAACATTGAAAAGTCAGTTTAGCAGC
ACCCCCACTCCATATCTGATCAACAAACATGTCTTCGGGCGGCTTTAAAAAGATTTTGGACAACT
TGTTCTCCAAGAAGACGTTGAAGTACATGTGCACCACCCATTTCTGGGGACCGGTGTCCAACTTT
GGCATTCCCATCGCTGCGGTTATGGATTTGAAGAAGGACCCGGAG
Done.