sallet_2.scaffold.fasta.s79.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold12
Parameters: 2 7 7 80 10 50 500
Length:  481520

Tables:   1   2   3   

This is table  1  of  3  ( 324 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--167	24	4.0	24	74	15	78	31	0	62	7	1.22
107--163	12	4.8	12	82	0	69	36	0	59	3	1.14
567--600	12	2.8	12	95	0	59	26	50	0	23	1.50
8002--8050	11	4.3	11	82	7	62	42	18	12	26	1.85
10307--10360	19	2.8	19	94	2	90	27	20	22	29	1.98
10408--10433	13	2.0	13	100	0	52	38	15	15	30	1.88
12929--13018	14	6.4	14	82	6	92	22	56	1	20	1.48
12929--13002	28	2.6	28	89	0	112	20	58	1	20	1.47
17273--17324	15	3.5	15	83	0	50	50	23	13	13	1.77
17283--17326	15	2.9	15	89	0	61	47	22	15	13	1.81
20979--21032	26	2.1	26	85	0	72	22	0	50	27	1.50
33735--33779	21	2.1	21	83	0	54	31	26	31	11	1.91
34691--34734	8	5.5	8	86	0	61	40	27	29	2	1.68
34987--35026	11	3.4	11	81	18	53	7	22	42	27	1.80
34986--35039	14	4.1	14	86	9	69	7	22	40	29	1.81
35174--35204	11	2.8	11	100	0	62	19	58	6	16	1.59
39119--39168	24	2.1	24	92	0	82	20	36	34	10	1.86
39330--39673	101	3.4	100	86	2	494	34	27	17	21	1.95
40082--40130	16	3.2	16	88	5	75	30	40	6	22	1.78
40797--40902	30	3.7	29	85	12	128	20	29	35	14	1.92
40892--40952	24	2.5	24	86	0	86	27	27	32	11	1.91
40917--40994	24	3.2	24	79	0	84	23	29	35	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40932--40994	12	5.2	12	86	0	72	20	31	36	11	1.88
41195--41225	15	2.1	15	100	0	62	25	51	12	9	1.70
41903--41927	9	2.8	9	100	0	50	8	44	48	0	1.32
42111--42138	9	3.1	9	100	0	56	21	46	32	0	1.52
45422--45457	18	2.0	18	88	0	54	8	19	41	30	1.81
45810--45898	20	4.6	19	83	6	101	31	11	42	14	1.81
45881--45905	12	2.1	12	100	0	50	32	8	52	8	1.60
49326--49362	19	2.0	20	89	10	60	37	51	5	5	1.48
49347--49380	11	3.1	11	86	0	50	44	44	2	8	1.50
55167--55206	11	3.6	11	89	0	53	17	75	5	2	1.10
60789--60819	16	1.9	16	100	0	62	25	29	38	6	1.81
61765--61810	18	2.6	18	89	0	65	13	32	6	47	1.68
68813--68848	17	2.1	17	100	0	72	27	22	22	27	1.99
72649--72709	18	3.2	19	81	11	72	37	19	39	3	1.68
72706--72732	12	2.2	12	100	0	54	44	0	48	7	1.31
73582--73626	15	3.2	15	75	18	60	31	15	44	8	1.77
73662--73710	15	3.1	15	78	16	53	34	2	42	20	1.64
73672--73708	18	2.1	18	94	0	65	32	2	45	18	1.64
73925--73968	12	3.7	12	90	0	61	36	40	4	18	1.71
73925--73973	12	4.1	12	89	0	53	36	42	4	16	1.67
79166--79197	16	2.0	16	100	0	64	18	31	18	31	1.95
90398--90509	12	10.1	12	72	16	89	19	50	27	1	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90402--90511	21	5.1	21	83	6	130	19	52	26	1	1.56
90398--90547	33	4.5	33	76	11	137	19	52	27	1	1.54
90501--90581	21	3.9	21	81	0	81	23	53	23	0	1.47
90480--90586	42	2.5	42	82	5	128	22	53	24	0	1.46
94918--94979	21	3.1	20	88	6	83	0	27	45	27	1.54
95533--95591	9	6.2	9	79	11	55	27	38	27	6	1.81
95549--95604	21	2.6	22	72	8	62	30	33	26	8	1.87
95566--95630	24	2.7	24	82	0	76	35	36	21	6	1.79
95631--95672	15	2.8	15	92	0	75	33	40	26	0	1.56
95675--95711	6	6.2	6	93	0	65	16	37	32	13	1.87
95677--95715	12	3.2	12	96	0	69	17	38	33	10	1.84
108195--108229	12	2.9	12	100	0	70	14	25	17	42	1.86
108369--108393	9	2.8	9	100	0	50	12	32	8	48	1.69
111148--111267	43	2.8	43	97	1	222	25	25	23	25	2.00
112961--112988	11	2.5	11	100	0	56	0	35	7	57	1.26
114722--114754	18	1.9	17	88	11	50	6	0	48	45	1.27
116394--116421	14	2.0	14	100	0	56	7	42	35	14	1.73
117609--117633	9	2.8	9	100	0	50	32	68	0	0	0.90
118821--118870	11	4.5	11	79	0	64	22	38	12	28	1.89
118821--118870	22	2.3	22	89	0	73	22	38	12	28	1.89
118881--118926	7	6.3	7	85	9	65	17	19	36	26	1.94
118877--118925	15	3.3	15	88	8	73	14	20	38	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118881--118926	22	2.1	22	95	0	83	17	19	36	26	1.94
119785--119822	9	4.2	9	93	6	60	0	47	34	18	1.49
120674--120700	12	2.2	12	100	0	54	29	29	22	18	1.97
120692--120742	18	2.8	18	84	0	66	29	31	21	17	1.96
120904--121010	9	11.6	9	79	9	81	7	19	39	33	1.80
120911--120944	6	5.7	6	86	13	52	2	14	47	35	1.60
120937--121010	9	8.6	9	85	8	109	9	21	35	33	1.86
121428--121474	15	3.1	15	88	11	78	14	46	19	19	1.84
122319--122354	15	2.4	15	95	0	63	11	47	27	13	1.77
122413--122471	30	2.0	30	100	0	118	20	37	35	6	1.79
123122--123184	15	4.2	15	79	0	54	31	12	34	20	1.90
123191--123257	9	7.4	9	84	0	71	23	23	25	26	2.00
123182--123257	27	2.8	27	90	4	109	23	22	26	27	1.99
123446--123486	12	3.4	12	82	0	55	4	17	53	24	1.63
123651--123725	15	5.0	15	90	6	125	28	45	13	13	1.81
124975--125013	12	3.2	12	77	0	51	23	30	33	12	1.92
125029--125068	18	2.2	18	95	0	71	22	37	37	2	1.68
125844--125889	18	2.6	18	85	0	65	36	19	30	13	1.90
125877--125914	18	2.1	18	90	0	58	21	21	42	15	1.89
125909--125956	18	2.7	18	83	0	60	18	29	37	14	1.91
125909--125949	9	4.6	9	84	0	55	19	29	36	14	1.92
125924--125953	9	3.3	9	95	0	51	16	36	36	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126441--126466	12	2.2	12	100	0	52	7	26	42	23	1.81
126548--126593	18	2.6	18	89	0	74	23	28	30	17	1.97
126609--126657	24	2.0	24	88	0	71	12	28	34	24	1.91
127449--127487	19	2.1	19	90	4	62	15	2	48	33	1.58
127757--127781	12	2.1	12	100	0	50	20	8	56	16	1.65
128191--128270	13	6.2	13	81	5	90	40	26	8	25	1.84
128305--128448	13	10.8	13	86	11	179	38	40	0	20	1.57
128305--128446	27	5.3	27	85	13	188	38	40	0	19	1.57
148037--148097	12	5.1	12	89	0	95	14	55	11	18	1.68
173251--173281	8	3.9	8	100	0	62	0	48	12	38	1.42
182540--182609	12	5.8	12	81	5	61	25	41	27	5	1.78
196309--196409	18	5.6	19	79	16	74	0	32	24	41	1.62
196309--196410	9	11.3	9	73	21	63	0	32	25	41	1.62
196333--196380	24	2.0	24	88	8	71	2	35	22	39	1.66
196427--196487	24	2.5	24	83	0	68	6	37	19	36	1.78
196443--196489	24	2.0	24	91	0	76	2	36	25	36	1.68
197533--197558	12	2.2	12	100	0	52	30	23	15	30	1.95
198501--198549	18	2.7	18	100	0	98	0	30	40	28	1.57
199134--199168	11	3.1	11	91	4	52	22	8	45	22	1.79
200448--200488	22	1.9	21	85	14	57	4	0	48	46	1.23
203809--203838	12	2.5	12	94	0	51	30	10	43	16	1.81
208265--208313	18	2.7	19	81	9	66	34	28	22	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208485--208546	18	3.6	17	86	4	81	22	30	11	35	1.89
213453--213483	13	2.4	13	94	0	53	6	51	12	29	1.65
213689--213744	15	3.7	15	87	0	67	37	41	12	8	1.74
213720--213883	24	6.8	24	82	5	134	47	33	16	2	1.60
213759--213871	3	37.7	3	89	0	82	52	33	14	0	1.42
213768--213883	27	4.3	27	93	0	178	50	33	16	0	1.46
213789--213887	3	33.0	3	89	0	72	47	33	19	0	1.50
214487--214536	15	3.3	15	91	0	73	34	26	24	16	1.95
220505--220636	9	14.7	9	94	0	210	59	1	39	0	1.07
220505--220642	45	3.1	45	95	0	249	59	1	38	0	1.12

Tables:   1   2   3