Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold12
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 481520
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:95 original size:24 final size:24
Alignment explanation
Indices: 68--167 Score: 78
Period size: 24 Copynumber: 4.0 Consensus size: 24
58 GGGGAGTGAA
*
68 GGGGATGAGAGAGGAGAGGAAGTGG
1 GGGGAGGAGAGAGGAGAGGAAGT-G
* *
93 GGGGAGGGGTAGGTGGAGAGGAAAGT-
1 GGGGAGGAG-A-GAGGAGAGG-AAGTG
* *
119 GGGGAGGGGAGAGGAGAGGATAG-A
1 GGGGAGGAGAGAGGAGAGGA-AGTG
* *
143 GGAGAGGAGAGAGGAGAGGAGGTG
1 GGGGAGGAGAGAGGAGAGGAAGTG
167 G
1 G
168 ATGAGGAGGC
Statistics
Matches: 61, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
23 2 0.03
24 29 0.48
25 8 0.13
26 10 0.16
27 8 0.13
28 4 0.07
ACGTcount: A:0.31, C:0.00, G:0.62, T:0.07
Consensus pattern (24 bp):
GGGGAGGAGAGAGGAGAGGAAGTG
Left flanking sequence: Indices 1 -- 67
TTTGTACTATGATGGGGAGCTGTTGGTGGAGGTGATCTCGGAGGAGGCGGGGAGAGGGGGGAGTG
AA
Right flanking sequence: Indices 168 -- 667
ATGAGGAGGCAGATGGGGAGGAAAGTGGGGGTGTTGGAGAGACAACGGGGGAAGCCAGTAGTGAC
CAGGCTGGTGCGAATGGAAACCAAAACGGTAACCACCCTGCCAATGGAAACAACTCTGCCACCGC
TGACACCTCACCCACTAACCTTGTCCAGTTTGAGCACGCCCACACCCGCGACACCCCCGACGCCC
GCTCGCGCGAGTCGACGCCCCAGCCGGGCCCTGGCAAGGCTCTGACCCTACTCAAGGCAGCTCTG
CCGCTGTCTGAAGAAACCAGCGAGACCCAGGTGGCCACGGACCCGCCCCAGAACGGAAACACCGA
AGACCTGGCCCTGGCCACCCTCTTTGACGCGGACGCCATCTCCACCGACTCCAGCTTGAATCCGA
CCTCTTCGGCTCAATCCACTTCTCAACCCACTTCTCAACCCACCACTTCGACTCAAACCTCTCCG
TCCCAACCCACTTCTCAACCCATCTCCCAACCCATTTCCCAGGCC
Found at i:120 original size:12 final size:12
Alignment explanation
Indices: 107--163 Score: 69
Period size: 12 Copynumber: 4.8 Consensus size: 12
97 AGGGGTAGGT
* *
107 GGAGAGGAAAGT
1 GGAGAGGAGAGA
* *
119 GGGGAGGGGAGA
1 GGAGAGGAGAGA
*
131 GGAGAGGATAGA
1 GGAGAGGAGAGA
143 GGAGAGGAGAGA
1 GGAGAGGAGAGA
155 GGAGAGGAG
1 GGAGAGGAG
164 GTGGATGAGG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.37, C:0.00, G:0.60, T:0.04
Consensus pattern (12 bp):
GGAGAGGAGAGA
Left flanking sequence: Indices 1 -- 106
TTTGTACTATGATGGGGAGCTGTTGGTGGAGGTGATCTCGGAGGAGGCGGGGAGAGGGGGGAGTG
AAGGGGATGAGAGAGGAGAGGAAGTGGGGGGAGGGGTAGGT
Right flanking sequence: Indices 164 -- 663
GTGGATGAGGAGGCAGATGGGGAGGAAAGTGGGGGTGTTGGAGAGACAACGGGGGAAGCCAGTAG
TGACCAGGCTGGTGCGAATGGAAACCAAAACGGTAACCACCCTGCCAATGGAAACAACTCTGCCA
CCGCTGACACCTCACCCACTAACCTTGTCCAGTTTGAGCACGCCCACACCCGCGACACCCCCGAC
GCCCGCTCGCGCGAGTCGACGCCCCAGCCGGGCCCTGGCAAGGCTCTGACCCTACTCAAGGCAGC
TCTGCCGCTGTCTGAAGAAACCAGCGAGACCCAGGTGGCCACGGACCCGCCCCAGAACGGAAACA
CCGAAGACCTGGCCCTGGCCACCCTCTTTGACGCGGACGCCATCTCCACCGACTCCAGCTTGAAT
CCGACCTCTTCGGCTCAATCCACTTCTCAACCCACTTCTCAACCCACCACTTCGACTCAAACCTC
TCCGTCCCAACCCACTTCTCAACCCATCTCCCAACCCATTTCCCA
Found at i:606 original size:15 final size:12
Alignment explanation
Indices: 567--600 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
557 ACCTCTTCGG
*
567 CTCAATCCACTT
1 CTCAACCCACTT
579 CTCAACCCACTT
1 CTCAACCCACTT
591 CTCAACCCAC
1 CTCAACCCAC
601 CACTTCGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.50, G:0.00, T:0.24
Consensus pattern (12 bp):
CTCAACCCACTT
Left flanking sequence: Indices 67 -- 566
AGGGGATGAGAGAGGAGAGGAAGTGGGGGGAGGGGTAGGTGGAGAGGAAAGTGGGGAGGGGAGAG
GAGAGGATAGAGGAGAGGAGAGAGGAGAGGAGGTGGATGAGGAGGCAGATGGGGAGGAAAGTGGG
GGTGTTGGAGAGACAACGGGGGAAGCCAGTAGTGACCAGGCTGGTGCGAATGGAAACCAAAACGG
TAACCACCCTGCCAATGGAAACAACTCTGCCACCGCTGACACCTCACCCACTAACCTTGTCCAGT
TTGAGCACGCCCACACCCGCGACACCCCCGACGCCCGCTCGCGCGAGTCGACGCCCCAGCCGGGC
CCTGGCAAGGCTCTGACCCTACTCAAGGCAGCTCTGCCGCTGTCTGAAGAAACCAGCGAGACCCA
GGTGGCCACGGACCCGCCCCAGAACGGAAACACCGAAGACCTGGCCCTGGCCACCCTCTTTGACG
CGGACGCCATCTCCACCGACTCCAGCTTGAATCCGACCTCTTCGG
Right flanking sequence: Indices 601 -- 1100
CACTTCGACTCAAACCTCTCCGTCCCAACCCACTTCTCAACCCATCTCCCAACCCATTTCCCAGG
CCTCTTCAGAAGCCTCACCCACCCCGTCCTCCACCACCTCGCCTTCCCCCTGGTTCCTCCGCGTG
TGCAAGCACCGCGTCATCGAGCTCCGCGACAACCGCCTCACCGTGGGCACCGTGGTCAACTGGGC
CGACTGGCTCGGCCAGCTTCTCCTCGCGGAGAACGACTCCGAGGCGTTTGGCGTGGCCACCCAGC
TCTACCACTTGGAGGACCCCGGGCTCCTAGCCCTTTTCGACTTGTCGGGGTCCTCTCGCCACGAG
CTCCTCCGCCCGTTCCTCTTGCGGATCATGGTGTCGCCGCGGTTGGACGCCCGCGTGGCCGACGT
CGTCGCCGCTGCCGCCTGTTTGGCGGTGGACCTGGCGAAACCGGTGCCCGAGCTCGAGCAGGTGC
TCCAAACCTGGTTCGACCGGGCCCCCGAGCCCGAGTTCTTTGCTG
Found at i:8033 original size:11 final size:11
Alignment explanation
Indices: 8002--8050 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
7992 AATAATATGG
8002 ATAAGTAGCCTA
1 ATAA-TAGCCTA
*
8014 GTAAATAGCCTA
1 AT-AATAGCCTA
8026 ATAATAGCCTA
1 ATAATAGCCTA
*
8037 ATCATAGCCTA
1 ATAATAGCCTA
8048 ATA
1 ATA
8051 CAACTTCGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 21 0.66
12 9 0.28
13 2 0.06
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (11 bp):
ATAATAGCCTA
Left flanking sequence: Indices 7502 -- 8001
GCTGGGCGGTCTCGGGATCAATTTGGTGCCCGCAGACACCGTGATTCTCTTTGATTCCGACTGGA
ACCCACAGATGGACCTCCAGGCGATCGACCGCGTGCACCGCATTGGGCAGAAGAAACCGGTGAAG
GTGGTGCGGTTTGTCACCCGCAACTCCATCGAGGAGATCATGTTGACCCGCTCTGCCTCGAAACG
GTTCTTGGAGAAGCTCGTGATCCAGATGGGCGAGTTCAAGTTCAACAAACTCAAGAAGGTGATGG
GGGGTACCGAGCTCAACGACCAGACTCCCATCAACATCCAGGAGCTCTTGGAGTTGTCTTCGCTC
CAGTTCGACTCGCAGACTGAGAACGAGGTGACCGACTACCCGGAGACGCCGGGCCCCGTGTTCAA
GCTCTCCGATGAAGAACTCTCTGAGATCCTTGATCGGAGCCCAGAGTGCTACAGCGACCATACCC
GCGACTTCAAGAACGTCACGGTGTTTGAAACGGTGAATAATATGG
Right flanking sequence: Indices 8051 -- 8550
CAACTTCGTCCCGTTTACATACTTGATTTTGGGCTGGCTCTCGTCCACAAAGCTCCATGGCACAG
GTTGCTGGCTGCGGCCACTGGTGATTACGAGCTCTTTGAGCTTTGGGTTGGGCTCGAGACACTTG
AGCCCCACGGTGACGTCACCGCTGTCCGCCCAGAGGTGGAGCCCAAGCCATTCCACCAGCGATGG
AATCCCTAGCGGGTATTCTTTGGTGGGCCGGTGGAACATGAAGAGTGTGAGATAACGGATGGAGA
GACCCGTGAAAATGGTTTCGAACTTCAGGAGCGGGAAGTTATCGCGGAACCGGACATGCGCCAGT
TCCAAGGGAGGAAATGTGAGGAGGGTAGGGTTCCACGATGCTCCTAGGTCAAGCATGACCTCGGT
GGTTTCGGGGTGGTATCTGTACGCCTGGTCATCATCGCTCATAGAAAAGAACTCGTTGGGAAGCA
ACGAAATGCACCGCTTGATGACAGGCTCGCCAACAAATGCGACGG
Found at i:10331 original size:19 final size:19
Alignment explanation
Indices: 10307--10360 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
10297 ATTGGTAATC
10307 GTATGTCACTGGCAAACAT
1 GTATGTCACTGGCAAACAT
*
10326 GTATGTCACTGGCAATCAT
1 GTATGTCACTGGCAAACAT
10345 GTATGTCACTTGGCAA
1 GTATGTCAC-TGGCAA
10361 TTGACTTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 27 0.82
20 6 0.18
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (19 bp):
GTATGTCACTGGCAAACAT
Left flanking sequence: Indices 9807 -- 10306
GTGAGCTCCCCGTACTGGTTGATCGAAACTACACGATCGATGTGGCGCCCAATGAACTCTTGCAC
TATGCCCTCGTCCAAGTCGTTCCAGATCTCAAGCACCAAGTGACGGCACCATTGCGCTGCCCGGA
ACATCCGCGAGTTGGGGAGTTGTCTCATATGGAGGGTTACCGGGACCTGCCCGATAACCCGGTAT
ATGTGCTGGAAGCGCTGGTCACAGCGCACTGCCAACGCTAGCAGCTCCAACAGGTCGAAGTCAAG
CAACGAAGCAATGTAGTAGACCTCGTCACTGGTGAGCTGGAGCATATTGCATGGTATGGGCGGGT
TAAGCAAAGAGTCGCAAAGCCGCATGGCGATGCATGACGATAAGGTGGGAGACGTAGGAACACGG
GCAAGAAAGCCCGAGATATGAGTGGGAAACAACATGTGAAGGATCTTATGGTTGTTTCGGGAATG
CTACTTTCGTATGGATGTTCATTTCAGTGTGGACAATTGGTAATC
Right flanking sequence: Indices 10361 -- 10860
TTGACTTCTTCACCAATGTACTAGCAATCGCAATACCTACATAGGACCATAAGTCATAGTCATAA
GTCATAGTTTATCGAGCTAAATACCATCCCTCGACCTACAGTTTCCCCTGACCTACAATTTAGCG
GACACTTCGATCCCGTCGTAGGCGATCTTGCGCCAGCGGAGGGCCTGCCACACCGCAGCGTAGCT
CCACGTGAGGTGCTGGGCTCCTTGCATGAACCCGTTGTAGCGGTTGAACTGCTCGCTGAGACTGC
CCTCGGCGCCGGCGTGGCGACGAACAACCTCCAAGAACGAGTCTGCGTGCTTCACGAGCAACCCC
ATCAAGTGGTTGAACCGTCGGGTGCCGTGCTCGAGCGAAACCGAGGGGTCTTCCACGAACTGAGC
GAGCCAGTCCCCTTCCTCAATCGACACGGCCACCTGACCCGAGGTGTGGTGGTGCACTAGGCGGT
AGATGACCTCGGCGGCGGAAGCGGTCACCAAGAACCACGGGTTTC
Found at i:10426 original size:13 final size:13
Alignment explanation
Indices: 10408--10433 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10398 TACATAGGAC
10408 CATAAGTCATAGT
1 CATAAGTCATAGT
10421 CATAAGTCATAGT
1 CATAAGTCATAGT
10434 TTATCGAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
CATAAGTCATAGT
Left flanking sequence: Indices 9908 -- 10407
CAAGTGACGGCACCATTGCGCTGCCCGGAACATCCGCGAGTTGGGGAGTTGTCTCATATGGAGGG
TTACCGGGACCTGCCCGATAACCCGGTATATGTGCTGGAAGCGCTGGTCACAGCGCACTGCCAAC
GCTAGCAGCTCCAACAGGTCGAAGTCAAGCAACGAAGCAATGTAGTAGACCTCGTCACTGGTGAG
CTGGAGCATATTGCATGGTATGGGCGGGTTAAGCAAAGAGTCGCAAAGCCGCATGGCGATGCATG
ACGATAAGGTGGGAGACGTAGGAACACGGGCAAGAAAGCCCGAGATATGAGTGGGAAACAACATG
TGAAGGATCTTATGGTTGTTTCGGGAATGCTACTTTCGTATGGATGTTCATTTCAGTGTGGACAA
TTGGTAATCGTATGTCACTGGCAAACATGTATGTCACTGGCAATCATGTATGTCACTTGGCAATT
GACTTCTTCACCAATGTACTAGCAATCGCAATACCTACATAGGAC
Right flanking sequence: Indices 10434 -- 10933
TTATCGAGCTAAATACCATCCCTCGACCTACAGTTTCCCCTGACCTACAATTTAGCGGACACTTC
GATCCCGTCGTAGGCGATCTTGCGCCAGCGGAGGGCCTGCCACACCGCAGCGTAGCTCCACGTGA
GGTGCTGGGCTCCTTGCATGAACCCGTTGTAGCGGTTGAACTGCTCGCTGAGACTGCCCTCGGCG
CCGGCGTGGCGACGAACAACCTCCAAGAACGAGTCTGCGTGCTTCACGAGCAACCCCATCAAGTG
GTTGAACCGTCGGGTGCCGTGCTCGAGCGAAACCGAGGGGTCTTCCACGAACTGAGCGAGCCAGT
CCCCTTCCTCAATCGACACGGCCACCTGACCCGAGGTGTGGTGGTGCACTAGGCGGTAGATGACC
TCGGCGGCGGAAGCGGTCACCAAGAACCACGGGTTTCCCTCGGAGGTCAGGTAGCCATCGTAGAT
GTCCTCCTTGTATCGGCCCAACGCCACGCCCTGGCCCCACCGGTT
Found at i:12948 original size:14 final size:14
Alignment explanation
Indices: 12929--13018 Score: 92
Period size: 14 Copynumber: 6.4 Consensus size: 14
12919 ACCACTCTAT
12929 ACTCACCCTCCACC
1 ACTCACCCTCCACC
12943 ACTCACTCC-CCACC
1 ACTCAC-CCTCCACC
* *
12957 GCTCACTCTCCACC
1 ACTCACCCTCCACC
*
12971 ACTCACTCTCCACC
1 ACTCACCCTCCACC
* *
12985 ACTCACTCTCCACT
1 ACTCACCCTCCACC
* *
12999 ACTCTCCACTACACC
1 ACTCACC-CTCCACC
13014 ACTCA
1 ACTCA
13019 ATCCCACTCC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
13 1 0.02
14 52 0.81
15 11 0.17
ACGTcount: A:0.22, C:0.57, G:0.01, T:0.20
Consensus pattern (14 bp):
ACTCACCCTCCACC
Left flanking sequence: Indices 12429 -- 12928
TTGGACGGACCCGTGGATGTCGCGGTCGACGGTGGTGCGGAACTGGTGGAGGGTCAGCGCCAACC
GGTCGAACTCGGCGTTGTTCTGCTGTTCTCGGTAGTCCGTCATACCCTGTGGGTGGTTATCACTG
AGTTTGCCACGCGGCTGCAGGAGCGCGAATAAGGGGTGGCGACGGGAGGGCTGGACCGGTGACTG
GGGGTGGTTGAGTGGTGGGAAGGGTATAGAGTGGTGTGGTGATTAGTGTAGTGTTGTCTTGTTTA
CTATAGCTAGTGTTTGCCCGGGTTTATGTCTGTTATTAGCGGACCCTACGCGTTACGATCAGCAA
CGTGGAATCTAGATCCTCCAGAAAAAGTTACAGACACGCGTGTGCCAGAACATGATTTTAAGGCG
TAACTTCCAATCACTCGCCTCTGCGAATGGTTTCGACCCCTTAATTGGTAATCCTGAGTACTTAG
TAGCACTCCCTTTTCTATACGCCCAATAGGATCCAACCACTCTAT
Right flanking sequence: Indices 13019 -- 13518
ATCCCACTCCTTTAACAAAATCAATCTCCCATTACCTATCCTAAATGCATTACTGGGTGAAAAAC
ACCGAAGAAGCCCGCTTTTCGTCGTCGAACCCGCCAAACGTGTTGACGCCGTGCTCGACATTGGC
CACGGAAAACTCCAAGTCGTCGGTGGTGATCATGTCCCAGTACTTATAGATCATCATCACGGTAA
ACAAGTTACAGAGCGAGCCAAAGAACAACCCGTCAATGTAGTGGTTGGCCCCGTTGCAGATCTCC
TGCGATACAGCATACGTCAACACCTGTCCTGCGGCAAAGAAAAACACAGCAAGAGAAATCGCCCC
AAGCAACCAGTAGTTGCGGAGGGCAAAGAGTACCAACACGATCTGCGACACAATGTACGCCGCCA
CAATGATCGCGTTGATGACAAAAGAGCACACAAACATCCCAGTGGTATCACGGTTGTTGAGTGAA
GTGCCCCAGGACTTGAAGGTGATGATGGAAACAATAAAATTGACG
Found at i:12962 original size:28 final size:28
Alignment explanation
Indices: 12929--13002 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
12919 ACCACTCTAT
*
12929 ACTCACCCTCCACCACTCACTCCCCACC
1 ACTCACTCTCCACCACTCACTCCCCACC
* *
12957 GCTCACTCTCCACCACTCACTCTCCACC
1 ACTCACTCTCCACCACTCACTCCCCACC
*
12985 ACTCACTCTCCACTACTC
1 ACTCACTCTCCACCACTC
13003 TCCACTACAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.20, C:0.58, G:0.01, T:0.20
Consensus pattern (28 bp):
ACTCACTCTCCACCACTCACTCCCCACC
Left flanking sequence: Indices 12429 -- 12928
TTGGACGGACCCGTGGATGTCGCGGTCGACGGTGGTGCGGAACTGGTGGAGGGTCAGCGCCAACC
GGTCGAACTCGGCGTTGTTCTGCTGTTCTCGGTAGTCCGTCATACCCTGTGGGTGGTTATCACTG
AGTTTGCCACGCGGCTGCAGGAGCGCGAATAAGGGGTGGCGACGGGAGGGCTGGACCGGTGACTG
GGGGTGGTTGAGTGGTGGGAAGGGTATAGAGTGGTGTGGTGATTAGTGTAGTGTTGTCTTGTTTA
CTATAGCTAGTGTTTGCCCGGGTTTATGTCTGTTATTAGCGGACCCTACGCGTTACGATCAGCAA
CGTGGAATCTAGATCCTCCAGAAAAAGTTACAGACACGCGTGTGCCAGAACATGATTTTAAGGCG
TAACTTCCAATCACTCGCCTCTGCGAATGGTTTCGACCCCTTAATTGGTAATCCTGAGTACTTAG
TAGCACTCCCTTTTCTATACGCCCAATAGGATCCAACCACTCTAT
Right flanking sequence: Indices 13003 -- 13502
TCCACTACACCACTCAATCCCACTCCTTTAACAAAATCAATCTCCCATTACCTATCCTAAATGCA
TTACTGGGTGAAAAACACCGAAGAAGCCCGCTTTTCGTCGTCGAACCCGCCAAACGTGTTGACGC
CGTGCTCGACATTGGCCACGGAAAACTCCAAGTCGTCGGTGGTGATCATGTCCCAGTACTTATAG
ATCATCATCACGGTAAACAAGTTACAGAGCGAGCCAAAGAACAACCCGTCAATGTAGTGGTTGGC
CCCGTTGCAGATCTCCTGCGATACAGCATACGTCAACACCTGTCCTGCGGCAAAGAAAAACACAG
CAAGAGAAATCGCCCCAAGCAACCAGTAGTTGCGGAGGGCAAAGAGTACCAACACGATCTGCGAC
ACAATGTACGCCGCCACAATGATCGCGTTGATGACAAAAGAGCACACAAACATCCCAGTGGTATC
ACGGTTGTTGAGTGAAGTGCCCCAGGACTTGAAGGTGATGATGGA
Found at i:17292 original size:15 final size:15
Alignment explanation
Indices: 17273--17324 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
17263 GCAGAAACAT
*
17273 AACCAGTAATAAAAC
1 AACCAGTAACAAAAC
* *
17288 GACCAGTAGCAAAAC
1 AACCAGTAACAAAAC
**
17303 AACCAGTTGCAAAAC
1 AACCAGTAACAAAAC
*
17318 AATCAGT
1 AACCAGT
17325 TGTAGAACCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.50, C:0.23, G:0.13, T:0.13
Consensus pattern (15 bp):
AACCAGTAACAAAAC
Left flanking sequence: Indices 16773 -- 17272
CTCCACTGGTGTGACGCAGTAGCAATGCAACATTACCACAGACGCGATGGAATAAGGGATAACAG
TGGGGGGAAGGGGTTTGAAACTACGCTTGGCGAAAATAGCGGGAGGGGATTATCGTGATGAATTG
CTTGACGTACACCTACACGGTGACAGGTGTTTCAGACGATGTTTCAGGTGACAAACGTTGTTGCA
CCTGCAAAGAAGGTCGTTGAAAGCATCACTTGCCTCTAAGGAACAGCCTACCGATACTTCACGAA
CCGGCGAAACAGAGCTACTACCGCTATACCCTTACCACTTTACCACTCGCTTGACTGTTTCGAGT
GGGTTAGTAACCTGGCAAACATAGCTACGTGGTTAGCCATACAGCTCCTTCTAGGGTAACCAACC
GTAGTTCCTGGTACCGCTAAAAAGATCGTACGACAAAAACAACGGTAATAGAGAAAAAGGTATTA
GGACCATCGGAATAGAACTACCTGTGAGACAACCAGCAGAAACAT
Right flanking sequence: Indices 17325 -- 17824
TGTAGAACCACCCGTAATAGTATCACCCGTAATAACCAGTAATAAAACCACCAGTCGTAAAACCA
CTAGTAACACTAGATCGATATCTACCCGTTCCCAACGTCACCCACCTATCATACTCCACACTATA
CCCCACAGCTCTAATTCCTATGTCATGTCTTCATTGCTATATACCGAATAAATAATCATAACCCG
GGCCAGCCGGTTCACACCTGGTAGGGCGGGGGCGTGTCAAACACCGAGGGGGCGCGGCCACGGTA
CGGGGTCAACCCGCGCCGCGAAAGCTCGCGCCCAAGCTTGTCGTGTATCTTTTTCGTGTCCAAGT
AGTTGCGCAGCTTGGTGGACTCCGCCACCCGCGGCACGCTGGCAATCGCCTGCTTGATCTCCTGG
GCCAACGGCACCGCGTGCGAGCTGCGGGGCGACACCGACACCTCTTTTTCCTTCACGTCGACCAT
AGGCAGCGCCAGCCGGGCCGTGAAATTGAAGTAGTTGTTGCCAAT
Found at i:17325 original size:15 final size:15
Alignment explanation
Indices: 17283--17326 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
17273 AACCAGTAAT
* *
17283 AAAACGACCAGTAGC
1 AAAACAACCAGTTGC
17298 AAAACAACCAGTTGC
1 AAAACAACCAGTTGC
*
17313 AAAACAATCAGTTG
1 AAAACAACCAGTTG
17327 TAGAACCACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.48, C:0.23, G:0.16, T:0.14
Consensus pattern (15 bp):
AAAACAACCAGTTGC
Left flanking sequence: Indices 16783 -- 17282
GTGACGCAGTAGCAATGCAACATTACCACAGACGCGATGGAATAAGGGATAACAGTGGGGGGAAG
GGGTTTGAAACTACGCTTGGCGAAAATAGCGGGAGGGGATTATCGTGATGAATTGCTTGACGTAC
ACCTACACGGTGACAGGTGTTTCAGACGATGTTTCAGGTGACAAACGTTGTTGCACCTGCAAAGA
AGGTCGTTGAAAGCATCACTTGCCTCTAAGGAACAGCCTACCGATACTTCACGAACCGGCGAAAC
AGAGCTACTACCGCTATACCCTTACCACTTTACCACTCGCTTGACTGTTTCGAGTGGGTTAGTAA
CCTGGCAAACATAGCTACGTGGTTAGCCATACAGCTCCTTCTAGGGTAACCAACCGTAGTTCCTG
GTACCGCTAAAAAGATCGTACGACAAAAACAACGGTAATAGAGAAAAAGGTATTAGGACCATCGG
AATAGAACTACCTGTGAGACAACCAGCAGAAACATAACCAGTAAT
Right flanking sequence: Indices 17327 -- 17826
TAGAACCACCCGTAATAGTATCACCCGTAATAACCAGTAATAAAACCACCAGTCGTAAAACCACT
AGTAACACTAGATCGATATCTACCCGTTCCCAACGTCACCCACCTATCATACTCCACACTATACC
CCACAGCTCTAATTCCTATGTCATGTCTTCATTGCTATATACCGAATAAATAATCATAACCCGGG
CCAGCCGGTTCACACCTGGTAGGGCGGGGGCGTGTCAAACACCGAGGGGGCGCGGCCACGGTACG
GGGTCAACCCGCGCCGCGAAAGCTCGCGCCCAAGCTTGTCGTGTATCTTTTTCGTGTCCAAGTAG
TTGCGCAGCTTGGTGGACTCCGCCACCCGCGGCACGCTGGCAATCGCCTGCTTGATCTCCTGGGC
CAACGGCACCGCGTGCGAGCTGCGGGGCGACACCGACACCTCTTTTTCCTTCACGTCGACCATAG
GCAGCGCCAGCCGGGCCGTGAAATTGAAGTAGTTGTTGCCAATGC
Found at i:21020 original size:26 final size:26
Alignment explanation
Indices: 20979--21032 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
20969 TAGGGAGGGG
*
20979 GGATGGTTGGGGTGTGATATGAGAGA
1 GGATGGTTGGGGTGTGATAAGAGAGA
** *
21005 GGATGGTTGGTTTGTGGTAAGAGAGA
1 GGATGGTTGGGGTGTGATAAGAGAGA
21031 GG
1 GG
21033 TACAGACACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.50, T:0.28
Consensus pattern (26 bp):
GGATGGTTGGGGTGTGATAAGAGAGA
Left flanking sequence: Indices 20479 -- 20978
TGAACGCCGCGGGCGAGGTGGTCCCGATGGCTCAGTTCCGTGGGCAGGTGCTCATCATCGTCAAT
GTTGCCCTGTTGTGCGGGTACACCCCCCAGTACCGCGAATTGCAGCTGCTATACGAGCATTACCA
CGACCAGGGGCTTGAGATCTTGGCCTTCCCCTGTGACCAGTTTCGCAACCAGGAGCCGTTCACCG
CAGCCCAGCTGCAGCAAGTAGCACGCGTCAAGTTTGGCGCCACCTTCCCGTTTTTCGCCAAGTGC
CATGTAAACGGGGCCCACGAGCTTCCATTGTACACATTCCTCAAGGGGTCGCGGCCCGGAATGCT
TGGGTTCCGTGGGGTCAGGTGGAATTTCGAGAAGTTCGTAGTGGCGCGGGACGGGCGGGTGGTCC
ACCGGGCGGTGACCGATGTGCCGCCGCTGGAGTTGGAACCGTTGGTTCGCGAGTTGTTGGCATAG
CATAGCATTGTATTATAATAGGACAAGGTAATAGTTAGGGAGGGG
Right flanking sequence: Indices 21033 -- 21532
TACAGACACTTATTAGTTGTATATTGTATTTGGTGTTGTCTGTTGGCTGGTGGGACGTTGCTTAT
CCGATGAGCATCGAGTTGAGGTGGGAAAACCAAACACCGACCACAATTTCCGAAAATGACACTCA
CCGTTAGCTCAATTGAGCCGTTTCTCTACAGCCCAGAAAGCGACCGGTTTTGTGTCACTTTTCAG
GCCACATTCAGCCGTATCGTTGTCAACGGTTTTGCAGCCACGAGAAAGCAGAGCACTAGACGGCT
ATGTGGCGAAACTCAAACGAGTCTAGCATTTATGGCACATAAATTCCCTTGCAAAACACTCTAAA
CAGATACCTTTACATACAACTGCTACTCAGCTAGTGTCTCCATCTACCTTCCCACACATCCGATA
CACAGCTAGCGTCTCAACCATCCCCTACCTTCACACAGCTAGTGTTTCCTCCTACCTTCACATCT
ATTGATACACAGTAAGCGTGCTAGACACTACCAGCGTCTCCAACC
Found at i:33778 original size:21 final size:21
Alignment explanation
Indices: 33735--33779 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
33725 TACCACGAGT
* * *
33735 ACGAGATCGACTGGCAGCCCG
1 ACGAGATCAACTGGAAGACCG
*
33756 ACGAGATCAACTGGAAGATCG
1 ACGAGATCAACTGGAAGACCG
33777 ACG
1 ACG
33780 GCAACGTGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.31, T:0.11
Consensus pattern (21 bp):
ACGAGATCAACTGGAAGACCG
Left flanking sequence: Indices 33235 -- 33734
TTGCTCGCAGTTCGGTGTGTGCGGCACCGGTGCCTACTGTCTCGGTGGGTGCGACCCGCGGTGGT
CGTACAAGATGGAGGCGTGCATGCCCCAGCCGGTGATGGAGTCGTTCGACACCGAGTTCCGCGAC
ATCAAGCAGGTCAAGAACCAGTACACCTACCTCGGCAACTCGCTGGAGGTCGACTGGTTGGTGTC
GGGCAACGCCACCATCCACGACGATGCGCTTCTCTTGCAGATGCCCGCGCACTCGGTGGGTGTGG
TGATCTCGCTGACCAAGTACATGTGGTACGGTAACGTCAAGGCCAAGATGAAAACCTCGCGCGGT
GCCGGTGTGGTGTCTGCCTTCATCATTTTCTCCGACGTCCAGGACGAGATCGACTACGAGATGGT
GGGCTCGGACTTGACGGGTCCGCAGTCCAACTACTACTACCAGGGTAACCTCGACTACAAGAACG
GCAAGCGTGCCGAGGTGTCGGACACCTTCGAGAACTACCACGAGT
Right flanking sequence: Indices 33780 -- 34279
GCAACGTGGTGCGCACGTTGAAGAAGGAGGACACCAAGGACTCCAGCGGCGTGTACAAGTTCCCC
CAGACCCCCTCGAGAGTGCAGTTCTCGTTGTGGCCCGGTGGCGACGCCTCGCAGGGCCAGGGCAC
CATCGAGTGGGCCGGCGGTGAGATCGACTGGGACTCCGAGGACATCCAGAAGGAGGGCTACTACT
ACGCCTACGTCAAGGACGTCAAGATCAAGGCCAACGACTTGAAGCTGGACATCCCCAAGAAGGGC
GAGGGCAAGGGCGACTACAACGCGTTCATCTACACCGACAAGGCCGGCACCGAGAACGACGTGGC
GTTGACCAACGCCAAGACCTACATCGGCAAGTGGGACGCCACCGGTTTGGACCCCCAGAACGAGG
ACAAGGAGGAGTCTTCTTCTTCTTCGTCGTCGTCGTCGTCGAAGTCGTCGCTGAAGCTGGAGTCC
AAGTCTGAGTCCAAGTCGTCGCTGAAGGACGACAAGAAGACCTCG
Found at i:34702 original size:8 final size:8
Alignment explanation
Indices: 34691--34734 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
34681 AGTAGAGAGA
*
34691 GAACCAGT
1 GAACCAGG
34699 GAACCAGG
1 GAACCAGG
*
34707 GAACCACG
1 GAACCAGG
*
34715 GAACCAGA
1 GAACCAGG
34723 GAACCAGG
1 GAACCAGG
34731 GAAC
1 GAAC
34735 TAGTAGAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.41, C:0.27, G:0.30, T:0.02
Consensus pattern (8 bp):
GAACCAGG
Left flanking sequence: Indices 34191 -- 34690
CTTCGTCGTCGTCGTCGTCGAAGTCGTCGCTGAAGCTGGAGTCCAAGTCTGAGTCCAAGTCGTCG
CTGAAGGACGACAAGAAGACCTCGTCCAAGGAGGACGACAAGGACAAGAAGACCTCGTCTGCGTC
CAAGACCCTGGAGCCCAAGTCCTCGTCGGAGGCCGAGCTGACCACTGCGCACGCCAACATCCCCC
AGGGCAACGGCCCCGGTGTTCAGGGCCAGCAGGTCTCGACCACTACCGACTCCGGTGCTGAGGAG
ACCGACGGCTCTTCTGGCGGCTCCAACGGCGGTTTCGACCAGGGCAACAAGGCCTCCGAGTCCGC
CAAGGAGACTGCCGCCACCAACTCTGCGAACGACGCCGTCGCTGTGGGCGGTGGTGTGGCCATGG
TGGTTGCGGCGGTGGCCGGTGCGTTGTCGTTGATCTTCTAACGGGCGCCAGTAACGTGTAATGAT
ATATCCTAATGTAAGAACTATTAATGAAGCAGAGAAGTAGAGAGA
Right flanking sequence: Indices 34735 -- 35234
TAGTAGAGCTCTGGCACCAGCAGGCGTGTCGTTTCAGCGTCAGCTGCGAGTAATATCCAACAATG
CCATTGATGTGGGCTATATAGCATTGATGTGGTTAATGGCCATGCAGTCAATAGACGAATCGGGT
AAAGGAGTGGGAGGAGGATGCCACGTTTCGATCTCGGGTGATCTGGTGTTACATCGAGCTATACT
CGATTTTGTAAGTCCTAGCCTGTTGTTTTTCTTTATGACGTAGCTTTGCGGTCTGAGGTGGCAGT
CTCGTGGCAGTCTCGTGGTGGCAGTCTCGTGGTGACTGTCTCGTGACAGGTCTGTTCCTGTGTAC
AGCCCGTGTATCTAGACCACTGTAGACCGATGACGTAGCCACCACCTATCCCACCGATGATTAAT
CTCTGAAACACCCCTGACCCCTAGACCTGCCACTCCACGTCCCCAACCACCACCTACCTGCCACC
TACCTGCCACCTACCCCTTCCATCCTTCGGCCCGTCCGCCTTCCC
Found at i:35003 original size:11 final size:11
Alignment explanation
Indices: 34987--35026 Score: 53
Period size: 11 Copynumber: 3.4 Consensus size: 11
34977 GCGGTCTGAG
34987 GTGGCAGTCTC
1 GTGGCAGTCTC
34998 GTGGCAGTCTC
1 GTGGCAGTCTC
35009 GTGGTGGCAGTCTC
1 ---GTGGCAGTCTC
35023 GTGG
1 GTGG
35027 TGACTGTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 15 0.58
14 11 0.42
ACGTcount: A:0.07, C:0.23, G:0.42, T:0.28
Consensus pattern (11 bp):
GTGGCAGTCTC
Left flanking sequence: Indices 34487 -- 34986
GACCAGGGCAACAAGGCCTCCGAGTCCGCCAAGGAGACTGCCGCCACCAACTCTGCGAACGACGC
CGTCGCTGTGGGCGGTGGTGTGGCCATGGTGGTTGCGGCGGTGGCCGGTGCGTTGTCGTTGATCT
TCTAACGGGCGCCAGTAACGTGTAATGATATATCCTAATGTAAGAACTATTAATGAAGCAGAGAA
GTAGAGAGAGAACCAGTGAACCAGGGAACCACGGAACCAGAGAACCAGGGAACTAGTAGAGCTCT
GGCACCAGCAGGCGTGTCGTTTCAGCGTCAGCTGCGAGTAATATCCAACAATGCCATTGATGTGG
GCTATATAGCATTGATGTGGTTAATGGCCATGCAGTCAATAGACGAATCGGGTAAAGGAGTGGGA
GGAGGATGCCACGTTTCGATCTCGGGTGATCTGGTGTTACATCGAGCTATACTCGATTTTGTAAG
TCCTAGCCTGTTGTTTTTCTTTATGACGTAGCTTTGCGGTCTGAG
Right flanking sequence: Indices 35027 -- 35526
TGACTGTCTCGTGACAGGTCTGTTCCTGTGTACAGCCCGTGTATCTAGACCACTGTAGACCGATG
ACGTAGCCACCACCTATCCCACCGATGATTAATCTCTGAAACACCCCTGACCCCTAGACCTGCCA
CTCCACGTCCCCAACCACCACCTACCTGCCACCTACCTGCCACCTACCCCTTCCATCCTTCGGCC
CGTCCGCCTTCCCCCGCGCCTCGCGTACTGCACCACCGCGGGCTCGCAACCCAGAACAAATCCCT
ACATAAAGCAACCACCCCCCCTCCACGCCAATCGTGTCGTCATGCAGTTTCCGCGGCTCCCGCGC
AAGGTGTTTAAGCGGACGTTTGTCACCCAGTTTGTTCTCACCGCGTTGTTTGTCACCGTGGTGGT
GAACATCTACTTCACCCTGTGGAAGCTCGACCAGGCCCAGGTGACACGGTTCTTCACCAACGAGA
TTCCCCGGTTTATCCGCGAGGGGATTGTCCACCGGCGCCAGAGCG
Found at i:35017 original size:14 final size:14
Alignment explanation
Indices: 34986--35039 Score: 69
Period size: 14 Copynumber: 4.1 Consensus size: 14
34976 TGCGGTCTGA
34986 GGTGGCAGTCTC--
1 GGTGGCAGTCTCGT
34998 -GTGGCAGTCTCGT
1 GGTGGCAGTCTCGT
35011 GGTGGCAGTCTCGT
1 GGTGGCAGTCTCGT
* *
35025 GGTGACTGTCTCGT
1 GGTGGCAGTCTCGT
35039 G
1 G
35040 ACAGGTCTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
11 11 0.30
14 26 0.70
ACGTcount: A:0.07, C:0.22, G:0.41, T:0.30
Consensus pattern (14 bp):
GGTGGCAGTCTCGT
Left flanking sequence: Indices 34486 -- 34985
CGACCAGGGCAACAAGGCCTCCGAGTCCGCCAAGGAGACTGCCGCCACCAACTCTGCGAACGACG
CCGTCGCTGTGGGCGGTGGTGTGGCCATGGTGGTTGCGGCGGTGGCCGGTGCGTTGTCGTTGATC
TTCTAACGGGCGCCAGTAACGTGTAATGATATATCCTAATGTAAGAACTATTAATGAAGCAGAGA
AGTAGAGAGAGAACCAGTGAACCAGGGAACCACGGAACCAGAGAACCAGGGAACTAGTAGAGCTC
TGGCACCAGCAGGCGTGTCGTTTCAGCGTCAGCTGCGAGTAATATCCAACAATGCCATTGATGTG
GGCTATATAGCATTGATGTGGTTAATGGCCATGCAGTCAATAGACGAATCGGGTAAAGGAGTGGG
AGGAGGATGCCACGTTTCGATCTCGGGTGATCTGGTGTTACATCGAGCTATACTCGATTTTGTAA
GTCCTAGCCTGTTGTTTTTCTTTATGACGTAGCTTTGCGGTCTGA
Right flanking sequence: Indices 35040 -- 35539
ACAGGTCTGTTCCTGTGTACAGCCCGTGTATCTAGACCACTGTAGACCGATGACGTAGCCACCAC
CTATCCCACCGATGATTAATCTCTGAAACACCCCTGACCCCTAGACCTGCCACTCCACGTCCCCA
ACCACCACCTACCTGCCACCTACCTGCCACCTACCCCTTCCATCCTTCGGCCCGTCCGCCTTCCC
CCGCGCCTCGCGTACTGCACCACCGCGGGCTCGCAACCCAGAACAAATCCCTACATAAAGCAACC
ACCCCCCCTCCACGCCAATCGTGTCGTCATGCAGTTTCCGCGGCTCCCGCGCAAGGTGTTTAAGC
GGACGTTTGTCACCCAGTTTGTTCTCACCGCGTTGTTTGTCACCGTGGTGGTGAACATCTACTTC
ACCCTGTGGAAGCTCGACCAGGCCCAGGTGACACGGTTCTTCACCAACGAGATTCCCCGGTTTAT
CCGCGAGGGGATTGTCCACCGGCGCCAGAGCGTGGTGGAAAATCT
Found at i:35190 original size:11 final size:11
Alignment explanation
Indices: 35174--35204 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
35164 TCCCCAACCA
35174 CCACCTACCTG
1 CCACCTACCTG
35185 CCACCTACCTG
1 CCACCTACCTG
35196 CCACCTACC
1 CCACCTACC
35205 CCTTCCATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.58, G:0.06, T:0.16
Consensus pattern (11 bp):
CCACCTACCTG
Left flanking sequence: Indices 34674 -- 35173
GCAGAGAAGTAGAGAGAGAACCAGTGAACCAGGGAACCACGGAACCAGAGAACCAGGGAACTAGT
AGAGCTCTGGCACCAGCAGGCGTGTCGTTTCAGCGTCAGCTGCGAGTAATATCCAACAATGCCAT
TGATGTGGGCTATATAGCATTGATGTGGTTAATGGCCATGCAGTCAATAGACGAATCGGGTAAAG
GAGTGGGAGGAGGATGCCACGTTTCGATCTCGGGTGATCTGGTGTTACATCGAGCTATACTCGAT
TTTGTAAGTCCTAGCCTGTTGTTTTTCTTTATGACGTAGCTTTGCGGTCTGAGGTGGCAGTCTCG
TGGCAGTCTCGTGGTGGCAGTCTCGTGGTGACTGTCTCGTGACAGGTCTGTTCCTGTGTACAGCC
CGTGTATCTAGACCACTGTAGACCGATGACGTAGCCACCACCTATCCCACCGATGATTAATCTCT
GAAACACCCCTGACCCCTAGACCTGCCACTCCACGTCCCCAACCA
Right flanking sequence: Indices 35205 -- 35704
CCTTCCATCCTTCGGCCCGTCCGCCTTCCCCCGCGCCTCGCGTACTGCACCACCGCGGGCTCGCA
ACCCAGAACAAATCCCTACATAAAGCAACCACCCCCCCTCCACGCCAATCGTGTCGTCATGCAGT
TTCCGCGGCTCCCGCGCAAGGTGTTTAAGCGGACGTTTGTCACCCAGTTTGTTCTCACCGCGTTG
TTTGTCACCGTGGTGGTGAACATCTACTTCACCCTGTGGAAGCTCGACCAGGCCCAGGTGACACG
GTTCTTCACCAACGAGATTCCCCGGTTTATCCGCGAGGGGATTGTCCACCGGCGCCAGAGCGTGG
TGGAAAATCTCGAGAAGCTGGCGCGCAACCGCGAGTTGTGGGCCGGCGTGCCGTTTGGCGACCTG
GCGTACTACGACTTTGACCGTAACGTAGTGGGCACCACCTCCTTTGGCTACAACCAGTACCAGCG
CCAGCCGTACGTGGCCAACGGGTACCTCGGTGCGCGCGTAGCCAA
Found at i:39151 original size:24 final size:24
Alignment explanation
Indices: 39119--39168 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
39109 AGGGACTGAA
*
39119 GCCACGGCTGAGTCCTAGACCGAG
1 GCCACGGCTGAGTCCAAGACCGAG
*
39143 GCCACGGCTGAGTCCAAGCCCGAG
1 GCCACGGCTGAGTCCAAGACCGAG
39167 GC
1 GC
39169 GAAGCCCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.36, G:0.34, T:0.10
Consensus pattern (24 bp):
GCCACGGCTGAGTCCAAGACCGAG
Left flanking sequence: Indices 38619 -- 39118
GCTCGATTTGAGCCTGGTGAAACGAAACAATCTGCATTGTAGCATGTATGACAAAAGCTCTGGCA
TATGTGCTTTACAGATGGACTTCGGACTTTCGGAAAGTTTTCCGAGACGTTGATTTGATCGTGTG
GATCATCCTAGAGCGGACTATCTTAGTTATATTAAAAATGTAAGATCCAGCCAACCTCCATCGCC
ACGTGAGGGTGCAAATGAAACGACTTAATGGATAGTAGGGACCAACGACAGCGTAAGCGCAAGAT
ACGAAGTTAAAGACGACATTGTCGCTTTCGGATTTAGTCCGCTTTCGAGCACTATCCCAATCGGG
TTAATTGCAACCACGACTTATAGTTGAATAAAAATTCATCGCCAATTACGCGGGTTCTCCCAACG
TGCGGACGGATTTGACTGACAATGACAATGTCATGATGGAGGCGGTTTCTTGACTAAAAAGCCAC
CCGAGGCTATGTGTGTATCGCAGTCCACATTGCCGAGGGACTGAA
Right flanking sequence: Indices 39169 -- 39668
GAAGCCCCAGCCCACGTCTGAGGCTAAGCCCACGAACAACCTGTTTGCCTGGTTGACAATTCGAA
CAGATTCTAACCCTGCATGCCAAAAGATTCTAGCCAAATGTCGGATTAAGATTTTAACGAAATAT
CGACTAGAAAAGACTCTACACGCCACCAAAGCCAAACGATTCTACCCAAACGTCGGATTACGATT
CTAACCAAGAGCCAAGACCGACCAAATGTGGTGACTTCTTGCACAACCAGCTCTACCCGCCAGTA
CCAAAAGATTCTAGCCAAATGCCGGATTAAGATTCTAACCAAGGTCAAGACTAATTAAATGTGGT
GACTTCTTGGACATCCAGCACTCTACCCGCCAATACCAAAAGATTCTAGCCAAATGACGGATTAC
GATTCTAACCAAGTGCCAAGACCGACCAAATGTGGTGACTTCTTGCACAACCAGCGCTATACCCG
CCAATACCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAAA
Found at i:39631 original size:101 final size:100
Alignment explanation
Indices: 39330--39673 Score: 494
Period size: 101 Copynumber: 3.4 Consensus size: 100
39320 GCCACCAAAG
* * * *
39330 CCAAACGATTCTACCCAAACGTCGGATTACGATTCTAACCAAGAGCCAAGACCGACCAAATGTGG
1 CCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAG-GCCAAGACCGACCAAATGTGG
*
39395 TGACTTCTTGCACAACCA--GCTCTACCCGCCAGTA
65 TGACTTCTTGCACAACCAGCGCTCTACCCGCCAATA
* * ** **
39429 CCAAAAGATTCTAGCCAAATGCCGGATTAAGATTCTAACCAAGGTCAAGACTAATTAAATGTGGT
1 CCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGGCCAAGACCGACCAAATGTGGT
* * *
39494 GACTTCTTGGACATCCAGCACTCTACCCGCCAATA
66 GACTTCTTGCACAACCAGCGCTCTACCCGCCAATA
* *
39529 CCAAAAGATTCTAGCCAAATGACGGATTACGATTCTAACCAAGTGCCAAGACCGACCAAATGTGG
1 CCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAG-GCCAAGACCGACCAAATGTGG
*
39594 TGACTTCTTGCACAACCAGCGCTATACCCGCCAATA
65 TGACTTCTTGCACAACCAGCGCTCTACCCGCCAATA
*
39630 CCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAAACAAGG
1 CCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGG
39674 TAAGACTAAC
Statistics
Matches: 214, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
98 32 0.15
99 38 0.18
100 56 0.26
101 88 0.41
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.21
Consensus pattern (100 bp):
CCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGGCCAAGACCGACCAAATGTGGT
GACTTCTTGCACAACCAGCGCTCTACCCGCCAATA
Left flanking sequence: Indices 38830 -- 39329
GAAACGACTTAATGGATAGTAGGGACCAACGACAGCGTAAGCGCAAGATACGAAGTTAAAGACGA
CATTGTCGCTTTCGGATTTAGTCCGCTTTCGAGCACTATCCCAATCGGGTTAATTGCAACCACGA
CTTATAGTTGAATAAAAATTCATCGCCAATTACGCGGGTTCTCCCAACGTGCGGACGGATTTGAC
TGACAATGACAATGTCATGATGGAGGCGGTTTCTTGACTAAAAAGCCACCCGAGGCTATGTGTGT
ATCGCAGTCCACATTGCCGAGGGACTGAAGCCACGGCTGAGTCCTAGACCGAGGCCACGGCTGAG
TCCAAGCCCGAGGCGAAGCCCCAGCCCACGTCTGAGGCTAAGCCCACGAACAACCTGTTTGCCTG
GTTGACAATTCGAACAGATTCTAACCCTGCATGCCAAAAGATTCTAGCCAAATGTCGGATTAAGA
TTTTAACGAAATATCGACTAGAAAAGACTCTACACGCCACCAAAG
Right flanking sequence: Indices 39674 -- 40173
TAAGACTAACTAAATTTCAGATAGAAAAGATTCTAACCCTGCATCAATGACAAAGATTCTAGCCA
AATGTCGGATTAAGATTCTAACCAAGGCCAAGACTAACCAATGTCAGATCAATATTCTAACCAAA
AGTCGAGAGTGACCAGATAACCAGAAAAGATTCTAACCCACCCCCATACCAAAGATTCTAGCCAA
TGTCGAATTAAGATTCTAACCACGAGTCGAGACATGCGTGTTCATATTGTCTTCCAACTATGGGG
ACCGCATCTCCTGGTTGAAAAACTGCTCTAATGGTCTTCTAGTGGTCTAGAGTAGCATTACTTAG
AATTGAATAGGCAGAAGTAGTCTGTACTGATACAAATCAACCGTGAGAAAAGACAAATGAAACGA
ACGCGTGGTCCGCAGTGGATCACACTCACTGATTCACACTCCCACTGAATCACACTCCCACTGAA
TCGTAGATACCTCCACTTACCACCACCTAATACGTCTACTCCAGC
Found at i:40111 original size:16 final size:16
Alignment explanation
Indices: 40082--40130 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
40072 TCCGCAGTGG
40082 ATCACACT--CACTGA
1 ATCACACTCCCACTGA
*
40096 TTCACACTCCCACTGA
1 ATCACACTCCCACTGA
40112 ATCACACTCCCACTGA
1 ATCACACTCCCACTGA
40128 ATC
1 ATC
40131 GTAGATACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 7 0.23
16 24 0.77
ACGTcount: A:0.31, C:0.41, G:0.06, T:0.22
Consensus pattern (16 bp):
ATCACACTCCCACTGA
Left flanking sequence: Indices 39582 -- 40081
GACCAAATGTGGTGACTTCTTGCACAACCAGCGCTATACCCGCCAATACCAAAAGATTCTAGCCA
AATGTCGGATTAAGATTCTAAACAAGGTAAGACTAACTAAATTTCAGATAGAAAAGATTCTAACC
CTGCATCAATGACAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGGCCAAGACTAAC
CAATGTCAGATCAATATTCTAACCAAAAGTCGAGAGTGACCAGATAACCAGAAAAGATTCTAACC
CACCCCCATACCAAAGATTCTAGCCAATGTCGAATTAAGATTCTAACCACGAGTCGAGACATGCG
TGTTCATATTGTCTTCCAACTATGGGGACCGCATCTCCTGGTTGAAAAACTGCTCTAATGGTCTT
CTAGTGGTCTAGAGTAGCATTACTTAGAATTGAATAGGCAGAAGTAGTCTGTACTGATACAAATC
AACCGTGAGAAAAGACAAATGAAACGAACGCGTGGTCCGCAGTGG
Right flanking sequence: Indices 40131 -- 40630
GTAGATACCTCCACTTACCACCACCTAATACGTCTACTCCAGCCTCACTAACATTCTCCATCCCA
CCCCTATAACCCTACCCAGAACCTCTTCTTCTACTTCTTCTACTCTTTGTTTATTATTTTGGTGC
CTAGTCGCCTAGTCATACGCCTCAATAGTCTATACCCAGACTGTCGCTGTTCGGTGCCACCTCCG
GTGGACCTCACCGCTCACCGCTCAATCGTACAACGCCTCGGCCATGGTGATCAACCGCTTGAGCC
CCGTGTTCCACTGGCCCATCTCGTCGCTAAAATTGGTCGACAACGCCAAGTTCAACGACGCCGCC
GTGGCAATGTCCTTGGCCGCCAACGCCAGACAGATCTCCTTCAACTGGGCAATGGCGCCGTCCAG
CAACAAGTCCTCGTTGTTCAAGTGGTCGTACAAGATGTTGAGCCGCTTGTTCATGTCGACGCCGT
GCTTGGCAAACCGCTCGGGGATCTTGGGCTTGATGGCGTCGTGCA
Found at i:40832 original size:30 final size:29
Alignment explanation
Indices: 40797--40902 Score: 128
Period size: 30 Copynumber: 3.7 Consensus size: 29
40787 GTTGGGCAGA
* * * *
40797 GCCCATGGGAGGAGCCTGGTTAGGAGCCTG
1 GCCCATAGCAGGAGCCTGGTTAGGAACC-C
40827 GCCCAT-G--GGAGCCTGGTTAGGAACACC
1 GCCCATAGCAGGAGCCTGGTTAGGAAC-CC
40854 GCCCATAGCAGGAGCCTGGTTAGGAACCCC
1 GCCCATAGCAGGAGCCTGGTTAGGAA-CCC
40884 GCCCATAGCAGGAGCCTGG
1 GCCCATAGCAGGAGCCTGG
40903 CCAAAAGCCA
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
27 22 0.32
28 2 0.03
29 1 0.01
30 43 0.62
31 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.36, T:0.14
Consensus pattern (29 bp):
GCCCATAGCAGGAGCCTGGTTAGGAACCC
Left flanking sequence: Indices 40297 -- 40796
CAGACTGTCGCTGTTCGGTGCCACCTCCGGTGGACCTCACCGCTCACCGCTCAATCGTACAACGC
CTCGGCCATGGTGATCAACCGCTTGAGCCCCGTGTTCCACTGGCCCATCTCGTCGCTAAAATTGG
TCGACAACGCCAAGTTCAACGACGCCGCCGTGGCAATGTCCTTGGCCGCCAACGCCAGACAGATC
TCCTTCAACTGGGCAATGGCGCCGTCCAGCAACAAGTCCTCGTTGTTCAAGTGGTCGTACAAGAT
GTTGAGCCGCTTGTTCATGTCGACGCCGTGCTTGGCAAACCGCTCGGGGATCTTGGGCTTGATGG
CGTCGTGCACCGCCAGCAACGTCTCGAAGATCGGGCGCAGCTCGGCGGGGATGTGGGTGCGGTCG
CCGGCCGGGTGGCGCTTCTTGGCCTCGGGCTGCGGCGGCGCGGGGGTGGCGGTGCCGGAAGACAT
CCCGCCCATGGGAGCCACGGGAGGCTGGCCAAGAGGTTGGGCAGA
Right flanking sequence: Indices 40903 -- 41402
CCAAAAGCCAGGTTAGGAGCTTGGCCAAAAGCCAGACCAGGAGCTTGGCCTGGAGCCTGGCCTGG
AGCCTGACCAGGAGCCTGACCAGGAGCATAGGCGTTGGCCTGCGCCTGCGGAGCATACGCGTTCG
CGTGAGGCACCTGACTCGCCTGGGCCTGAGACCCCTGACTCGCCTGGCTCACCTGGCTCACCGAA
GGAACCCTAGCCGGCCCGGGAGGCGGCGGAGCCAGCGCCAGCGGCACCCGCGCAGGGCCCAGCGG
CGGCGGCCCCACCGGAGGCGAGCCCGGGCCGTTGCCAAACCCACCGCTGCCAAACCCACCGCTCA
TCGGCGGCGGCGCAAACGCCCCCTCGGCCGACAGCGAGAACGCAGGGGGCCCAGCGGACGCCTTG
GGCGCGTACGGGTTGGCCGCGGGCGCGGGAGCGGGCGCTGGCGGAGCCGCAAAGCTCGTCAGCGG
CGGCAACGGGCCCTGCTGCGGCACGTGCGGGGTGCCCGACGGCGC
Found at i:40927 original size:24 final size:24
Alignment explanation
Indices: 40892--40952 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
40882 CCGCCCATAG
* **
40892 CAGGAGCCTGGCCAAAAGCCAGGT
1 CAGGAGCTTGGCCAAAAGCCAGAC
*
40916 TAGGAGCTTGGCCAAAAGCCAGAC
1 CAGGAGCTTGGCCAAAAGCCAGAC
40940 CAGGAGCTTGGCC
1 CAGGAGCTTGGCC
40953 TGGAGCCTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.11
Consensus pattern (24 bp):
CAGGAGCTTGGCCAAAAGCCAGAC
Left flanking sequence: Indices 40392 -- 40891
CGTGTTCCACTGGCCCATCTCGTCGCTAAAATTGGTCGACAACGCCAAGTTCAACGACGCCGCCG
TGGCAATGTCCTTGGCCGCCAACGCCAGACAGATCTCCTTCAACTGGGCAATGGCGCCGTCCAGC
AACAAGTCCTCGTTGTTCAAGTGGTCGTACAAGATGTTGAGCCGCTTGTTCATGTCGACGCCGTG
CTTGGCAAACCGCTCGGGGATCTTGGGCTTGATGGCGTCGTGCACCGCCAGCAACGTCTCGAAGA
TCGGGCGCAGCTCGGCGGGGATGTGGGTGCGGTCGCCGGCCGGGTGGCGCTTCTTGGCCTCGGGC
TGCGGCGGCGCGGGGGTGGCGGTGCCGGAAGACATCCCGCCCATGGGAGCCACGGGAGGCTGGCC
AAGAGGTTGGGCAGAGCCCATGGGAGGAGCCTGGTTAGGAGCCTGGCCCATGGGAGCCTGGTTAG
GAACACCGCCCATAGCAGGAGCCTGGTTAGGAACCCCGCCCATAG
Right flanking sequence: Indices 40953 -- 41452
TGGAGCCTGGCCTGGAGCCTGACCAGGAGCCTGACCAGGAGCATAGGCGTTGGCCTGCGCCTGCG
GAGCATACGCGTTCGCGTGAGGCACCTGACTCGCCTGGGCCTGAGACCCCTGACTCGCCTGGCTC
ACCTGGCTCACCGAAGGAACCCTAGCCGGCCCGGGAGGCGGCGGAGCCAGCGCCAGCGGCACCCG
CGCAGGGCCCAGCGGCGGCGGCCCCACCGGAGGCGAGCCCGGGCCGTTGCCAAACCCACCGCTGC
CAAACCCACCGCTCATCGGCGGCGGCGCAAACGCCCCCTCGGCCGACAGCGAGAACGCAGGGGGC
CCAGCGGACGCCTTGGGCGCGTACGGGTTGGCCGCGGGCGCGGGAGCGGGCGCTGGCGGAGCCGC
AAAGCTCGTCAGCGGCGGCAACGGGCCCTGCTGCGGCACGTGCGGGGTGCCCGACGGCGCGTACG
GGTTCTTGGGCGCCTTGTGCGGGGTGGCGCGGCCCAGCGCCAGGG
Found at i:40959 original size:24 final size:24
Alignment explanation
Indices: 40917--40994 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
40907 AAGCCAGGTT
** *
40917 AGGAGCTTGGCCAAAAGCCAGACC
1 AGGAGCTTGGCCAGGAGCCTGACC
* *
40941 AGGAGCTTGGCCTGGAGCCTGGCC
1 AGGAGCTTGGCCAGGAGCCTGACC
* * *
40965 TGGAGCCTGACCAGGAGCCTGACC
1 AGGAGCTTGGCCAGGAGCCTGACC
40989 AGGAGC
1 AGGAGC
40995 ATAGGCGTTG
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.23, C:0.29, G:0.36, T:0.12
Consensus pattern (24 bp):
AGGAGCTTGGCCAGGAGCCTGACC
Left flanking sequence: Indices 40417 -- 40916
CTAAAATTGGTCGACAACGCCAAGTTCAACGACGCCGCCGTGGCAATGTCCTTGGCCGCCAACGC
CAGACAGATCTCCTTCAACTGGGCAATGGCGCCGTCCAGCAACAAGTCCTCGTTGTTCAAGTGGT
CGTACAAGATGTTGAGCCGCTTGTTCATGTCGACGCCGTGCTTGGCAAACCGCTCGGGGATCTTG
GGCTTGATGGCGTCGTGCACCGCCAGCAACGTCTCGAAGATCGGGCGCAGCTCGGCGGGGATGTG
GGTGCGGTCGCCGGCCGGGTGGCGCTTCTTGGCCTCGGGCTGCGGCGGCGCGGGGGTGGCGGTGC
CGGAAGACATCCCGCCCATGGGAGCCACGGGAGGCTGGCCAAGAGGTTGGGCAGAGCCCATGGGA
GGAGCCTGGTTAGGAGCCTGGCCCATGGGAGCCTGGTTAGGAACACCGCCCATAGCAGGAGCCTG
GTTAGGAACCCCGCCCATAGCAGGAGCCTGGCCAAAAGCCAGGTT
Right flanking sequence: Indices 40995 -- 41494
ATAGGCGTTGGCCTGCGCCTGCGGAGCATACGCGTTCGCGTGAGGCACCTGACTCGCCTGGGCCT
GAGACCCCTGACTCGCCTGGCTCACCTGGCTCACCGAAGGAACCCTAGCCGGCCCGGGAGGCGGC
GGAGCCAGCGCCAGCGGCACCCGCGCAGGGCCCAGCGGCGGCGGCCCCACCGGAGGCGAGCCCGG
GCCGTTGCCAAACCCACCGCTGCCAAACCCACCGCTCATCGGCGGCGGCGCAAACGCCCCCTCGG
CCGACAGCGAGAACGCAGGGGGCCCAGCGGACGCCTTGGGCGCGTACGGGTTGGCCGCGGGCGCG
GGAGCGGGCGCTGGCGGAGCCGCAAAGCTCGTCAGCGGCGGCAACGGGCCCTGCTGCGGCACGTG
CGGGGTGCCCGACGGCGCGTACGGGTTCTTGGGCGCCTTGTGCGGGGTGGCGCGGCCCAGCGCCA
GGGCCAGCGGGTCGAACACCTGGGCCGGCGGCGGCACCGACCCGG
Found at i:40986 original size:12 final size:12
Alignment explanation
Indices: 40932--40994 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
40922 CTTGGCCAAA
*
40932 AGCCAGACCAGG
1 AGCCTGACCAGG
* * *
40944 AGCTTGGCCTGG
1 AGCCTGACCAGG
* *
40956 AGCCTGGCCTGG
1 AGCCTGACCAGG
40968 AGCCTGACCAGG
1 AGCCTGACCAGG
40980 AGCCTGACCAGG
1 AGCCTGACCAGG
40992 AGC
1 AGC
40995 ATAGGCGTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.21, C:0.32, G:0.37, T:0.11
Consensus pattern (12 bp):
AGCCTGACCAGG
Left flanking sequence: Indices 40432 -- 40931
AACGCCAAGTTCAACGACGCCGCCGTGGCAATGTCCTTGGCCGCCAACGCCAGACAGATCTCCTT
CAACTGGGCAATGGCGCCGTCCAGCAACAAGTCCTCGTTGTTCAAGTGGTCGTACAAGATGTTGA
GCCGCTTGTTCATGTCGACGCCGTGCTTGGCAAACCGCTCGGGGATCTTGGGCTTGATGGCGTCG
TGCACCGCCAGCAACGTCTCGAAGATCGGGCGCAGCTCGGCGGGGATGTGGGTGCGGTCGCCGGC
CGGGTGGCGCTTCTTGGCCTCGGGCTGCGGCGGCGCGGGGGTGGCGGTGCCGGAAGACATCCCGC
CCATGGGAGCCACGGGAGGCTGGCCAAGAGGTTGGGCAGAGCCCATGGGAGGAGCCTGGTTAGGA
GCCTGGCCCATGGGAGCCTGGTTAGGAACACCGCCCATAGCAGGAGCCTGGTTAGGAACCCCGCC
CATAGCAGGAGCCTGGCCAAAAGCCAGGTTAGGAGCTTGGCCAAA
Right flanking sequence: Indices 40995 -- 41494
ATAGGCGTTGGCCTGCGCCTGCGGAGCATACGCGTTCGCGTGAGGCACCTGACTCGCCTGGGCCT
GAGACCCCTGACTCGCCTGGCTCACCTGGCTCACCGAAGGAACCCTAGCCGGCCCGGGAGGCGGC
GGAGCCAGCGCCAGCGGCACCCGCGCAGGGCCCAGCGGCGGCGGCCCCACCGGAGGCGAGCCCGG
GCCGTTGCCAAACCCACCGCTGCCAAACCCACCGCTCATCGGCGGCGGCGCAAACGCCCCCTCGG
CCGACAGCGAGAACGCAGGGGGCCCAGCGGACGCCTTGGGCGCGTACGGGTTGGCCGCGGGCGCG
GGAGCGGGCGCTGGCGGAGCCGCAAAGCTCGTCAGCGGCGGCAACGGGCCCTGCTGCGGCACGTG
CGGGGTGCCCGACGGCGCGTACGGGTTCTTGGGCGCCTTGTGCGGGGTGGCGCGGCCCAGCGCCA
GGGCCAGCGGGTCGAACACCTGGGCCGGCGGCGGCACCGACCCGG
Found at i:41215 original size:15 final size:15
Alignment explanation
Indices: 41195--41225 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
41185 CCCGGGCCGT
41195 TGCCAAACCCACCGC
1 TGCCAAACCCACCGC
41210 TGCCAAACCCACCGC
1 TGCCAAACCCACCGC
41225 T
1 T
41226 CATCGGCGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.52, G:0.13, T:0.10
Consensus pattern (15 bp):
TGCCAAACCCACCGC
Left flanking sequence: Indices 40695 -- 41194
GTGGCGCTTCTTGGCCTCGGGCTGCGGCGGCGCGGGGGTGGCGGTGCCGGAAGACATCCCGCCCA
TGGGAGCCACGGGAGGCTGGCCAAGAGGTTGGGCAGAGCCCATGGGAGGAGCCTGGTTAGGAGCC
TGGCCCATGGGAGCCTGGTTAGGAACACCGCCCATAGCAGGAGCCTGGTTAGGAACCCCGCCCAT
AGCAGGAGCCTGGCCAAAAGCCAGGTTAGGAGCTTGGCCAAAAGCCAGACCAGGAGCTTGGCCTG
GAGCCTGGCCTGGAGCCTGACCAGGAGCCTGACCAGGAGCATAGGCGTTGGCCTGCGCCTGCGGA
GCATACGCGTTCGCGTGAGGCACCTGACTCGCCTGGGCCTGAGACCCCTGACTCGCCTGGCTCAC
CTGGCTCACCGAAGGAACCCTAGCCGGCCCGGGAGGCGGCGGAGCCAGCGCCAGCGGCACCCGCG
CAGGGCCCAGCGGCGGCGGCCCCACCGGAGGCGAGCCCGGGCCGT
Right flanking sequence: Indices 41226 -- 41725
CATCGGCGGCGGCGCAAACGCCCCCTCGGCCGACAGCGAGAACGCAGGGGGCCCAGCGGACGCCT
TGGGCGCGTACGGGTTGGCCGCGGGCGCGGGAGCGGGCGCTGGCGGAGCCGCAAAGCTCGTCAGC
GGCGGCAACGGGCCCTGCTGCGGCACGTGCGGGGTGCCCGACGGCGCGTACGGGTTCTTGGGCGC
CTTGTGCGGGGTGGCGCGGCCCAGCGCCAGGGCCAGCGGGTCGAACACCTGGGCCGGCGGCGGCA
CCGACCCGGGCGGCGGCGCGTACTTGCTCGGGGTGAGGTGGCCCAGGCTGGGCGAGTTCATCGCG
GGCAGGAGCAGCGTGGACAACTGGCGCGCGCCGCCGGTGGGCGGGCGGGTCAACCCCAGCGGCGA
CCGCGACGGGCCCGGGCGCGGCGCCGAGTGGGGCGGCTGGAACGGCGGCGCCGTGGGTGCGGGCG
GCTGGCCAAACGCGGCGGGCGCGGGGGTGGCGGCGGAGGCTGCGG
Found at i:41915 original size:9 final size:9
Alignment explanation
Indices: 41903--41927 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
41893 GCCGGCGGCT
41903 GCGGCGCCA
1 GCGGCGCCA
41912 GCGGCGCCA
1 GCGGCGCCA
41921 GCGGCGC
1 GCGGCGC
41928 GTACGGGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.44, G:0.48, T:0.00
Consensus pattern (9 bp):
GCGGCGCCA
Left flanking sequence: Indices 41403 -- 41902
GTACGGGTTCTTGGGCGCCTTGTGCGGGGTGGCGCGGCCCAGCGCCAGGGCCAGCGGGTCGAACA
CCTGGGCCGGCGGCGGCACCGACCCGGGCGGCGGCGCGTACTTGCTCGGGGTGAGGTGGCCCAGG
CTGGGCGAGTTCATCGCGGGCAGGAGCAGCGTGGACAACTGGCGCGCGCCGCCGGTGGGCGGGCG
GGTCAACCCCAGCGGCGACCGCGACGGGCCCGGGCGCGGCGCCGAGTGGGGCGGCTGGAACGGCG
GCGCCGTGGGTGCGGGCGGCTGGCCAAACGCGGCGGGCGCGGGGGTGGCGGCGGAGGCTGCGGCG
CGGCGCGGCGGCGCGCCGAGCTTGATCCCGTCCGGCAAGTCGTTCCAGCCCTCCTCTTTCTTCTT
GGCGGGGCCCAGCGGCGGCGGCGCCACCGGGGCCAGCGCGCCGTTCATCAGCGCAAACTGCGGCG
CCGGCAGCGCCATGCCCTGCGGCGCGTAGGGGTTGGCCGGCGGCT
Right flanking sequence: Indices 41928 -- 42427
GTACGGGTTGCTGCGGGCGTACGGGTTGGCACGGCCGGCCGCGGGCAGCGCGCGGCCGGGCGGCT
GGGCAAACAGCGGCACCGGCGGGAACCCGGGCGCCGTCGGCGGCGCGGAGTACGCCAGCGTGGGC
GGCCCGCCGTACTGCGAGCCCGCGTACGACAGCGCGGGGGCCACCGGCGGCGCCACCAGCGGCAC
CAGCGGCACCAGCGGCGGCGGCATTTGCAGCGCTACCGGGGCCGGCTGGCCGTAGGGGTTGGCGG
GCTTCGCCGGCAGCGCCCGGGCGTAGCGGCCGCCTGCGTTCGCCAGCGACAGCGCCGACATGGCG
GTGCCTTTCGCCGTGCCTTTCGCCATGGCACTGCCTTTGTGGGTCGTCGTCGCCTTTGCCATTGC
CGTCGTGATGCGGTCCGACTCCACCGCCGCGGTCTCCGCCGGCAACAACGGCAAGAACTGCGCCG
CCAACTCGAAGTCGCCCGCGGCCGCCACCAAGCCCACGTACTCCA
Found at i:42125 original size:9 final size:9
Alignment explanation
Indices: 42111--42138 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
42101 CCGGCGGCGC
42111 CACCAGCGG
1 CACCAGCGG
42120 CACCAGCGG
1 CACCAGCGG
42129 CACCAGCGG
1 CACCAGCGG
42138 C
1 C
42139 GGCGGCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.46, G:0.32, T:0.00
Consensus pattern (9 bp):
CACCAGCGG
Left flanking sequence: Indices 41611 -- 42110
GGCGACCGCGACGGGCCCGGGCGCGGCGCCGAGTGGGGCGGCTGGAACGGCGGCGCCGTGGGTGC
GGGCGGCTGGCCAAACGCGGCGGGCGCGGGGGTGGCGGCGGAGGCTGCGGCGCGGCGCGGCGGCG
CGCCGAGCTTGATCCCGTCCGGCAAGTCGTTCCAGCCCTCCTCTTTCTTCTTGGCGGGGCCCAGC
GGCGGCGGCGCCACCGGGGCCAGCGCGCCGTTCATCAGCGCAAACTGCGGCGCCGGCAGCGCCAT
GCCCTGCGGCGCGTAGGGGTTGGCCGGCGGCTGCGGCGCCAGCGGCGCCAGCGGCGCGTACGGGT
TGCTGCGGGCGTACGGGTTGGCACGGCCGGCCGCGGGCAGCGCGCGGCCGGGCGGCTGGGCAAAC
AGCGGCACCGGCGGGAACCCGGGCGCCGTCGGCGGCGCGGAGTACGCCAGCGTGGGCGGCCCGCC
GTACTGCGAGCCCGCGTACGACAGCGCGGGGGCCACCGGCGGCGC
Right flanking sequence: Indices 42139 -- 42638
GGCGGCATTTGCAGCGCTACCGGGGCCGGCTGGCCGTAGGGGTTGGCGGGCTTCGCCGGCAGCGC
CCGGGCGTAGCGGCCGCCTGCGTTCGCCAGCGACAGCGCCGACATGGCGGTGCCTTTCGCCGTGC
CTTTCGCCATGGCACTGCCTTTGTGGGTCGTCGTCGCCTTTGCCATTGCCGTCGTGATGCGGTCC
GACTCCACCGCCGCGGTCTCCGCCGGCAACAACGGCAAGAACTGCGCCGCCAACTCGAAGTCGCC
CGCGGCCGCCACCAAGCCCACGTACTCCAACACCGCGCGCGCCACCGCGGGCAGCAGGATCGTCA
GCGTGGTGCCCGTGAGCGCGCGGTACAGCGCCACCTTCTGGACGAAGTTGTCGAGCGCCGCGAAC
CGGGCGTCCGCGGGCAGCAGCACCCCCGGAGCGCTGCCCGCGGTGAGCAGCTGCTCGAAGGCCGG
GAGCTCGTCGAGCCACACCGCGGCGATGCGGTCGAGGTTCCCGGC
Found at i:45448 original size:18 final size:18
Alignment explanation
Indices: 45422--45457 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45412 GATAGGTGGA
45422 AGGCCGTTGGTTGAGCTC
1 AGGCCGTTGGTTGAGCTC
* *
45440 AGGCTGTTGGTTGGGCTC
1 AGGCCGTTGGTTGAGCTC
45458 TGTTGAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.19, G:0.42, T:0.31
Consensus pattern (18 bp):
AGGCCGTTGGTTGAGCTC
Left flanking sequence: Indices 44922 -- 45421
ACGGTGGCACAGTGGCACGGTTGCTGTGCCTGTGATACGCGACGCGTCTCCCGCATGGCTCGTGG
ATCAGGCGGTGACCGCGCAGTGGTGACAGACCGCGCATAGTTCCATGTGATCGCGTGGAGAGAAG
GGTAGTGTGTAGTAGGTCAGTAGGGTAAATGGTGGGTGCCGTGGTGGATGTTGTGGTGGGTCATG
GTAATGTGAGTAATTTTGACATTCGTAGATTGAACCACAACTCTTGGTTTGACGTCTGACGCGTC
TTACCACCAATTACAATTAGAGGTGGTGTGGTGGTCAACTGTGGTGGAGAGTGGTGTAGAACTGG
TTAATCGCGTGGCTGGACGTGTGGCTACGGTGCTGGTTGGTGGATCATGCCTGCTCTTTTGGTCA
ATGAATTGCGTTCGACATTTTTCATATAGTTTGTCCTAGCTGGGGGGGCCGCGAGCGGCGCCCCC
CCAGACCCCCCCACCGCCTACTTTGAGTAGCCACGGATAGGTGGA
Right flanking sequence: Indices 45458 -- 45957
TGTTGAATTGATGGCGTTTCCTTGCCCTGGTTGACCTTGCTACCGCTGTTTCGATAATATTGAGC
TAGTTGTGTTCCATCAGGCAAAGAACACAACGAAGATCCAGCGAAGGCATGGAACAACGGTGACA
CGTCTGACAGGTACCATTGTCACTGTATGCAATCGAGCTGTTGGGATTTATGACCCATATTTACT
TTTATTTTTACTGGTAGAAGAGGGTGGTATTTGTAGTGAAAATGGGGACCATTGCAGTCGACTTG
TGGTGGTGATTGTCAGTAACGGATTGAGTAATGTGGCGAATGCCACTCGAGTCAGAGTCCAGAAT
GTGGTATGTACGAATGGTGAAGAGGGAAAGTGTGCAAGAGTGCAAGCAAGTGTGCAAGGGTGCTA
GAAAGTGTGCAAGGGTGCAAGAGGTGTGCAAGGGCAAGGAAGGGTGCAAGGAAGGGTGAGGAAAG
AGTGCAAAATACCATGAACACATTACACACCAACAGCCACAAGAC
Found at i:45835 original size:20 final size:19
Alignment explanation
Indices: 45810--45898 Score: 101
Period size: 20 Copynumber: 4.6 Consensus size: 19
45800 TGAAGAGGGA
*
45810 AAGTGTGCAAGAGTGCAAG
1 AAGTGTGCAAGGGTGCAAG
*
45829 CAAGTGTGCAAGGGTGCTAG
1 -AAGTGTGCAAGGGTGCAAG
45849 AAAGTGTGCAAGGGTGCAAG
1 -AAGTGTGCAAGGGTGCAAG
*
45869 AGGTGTGCAA-GG-GCAAGG
1 AAGTGTGCAAGGGTGCAA-G
*
45887 AAGGGTGCAAGG
1 AAGTGTGCAAGG
45899 AAGGGTGAGG
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.07
18 11 0.18
19 10 0.17
20 35 0.58
ACGTcount: A:0.31, C:0.11, G:0.43, T:0.15
Consensus pattern (19 bp):
AAGTGTGCAAGGGTGCAAG
Left flanking sequence: Indices 45310 -- 45809
CAATGAATTGCGTTCGACATTTTTCATATAGTTTGTCCTAGCTGGGGGGGCCGCGAGCGGCGCCC
CCCCAGACCCCCCCACCGCCTACTTTGAGTAGCCACGGATAGGTGGAAGGCCGTTGGTTGAGCTC
AGGCTGTTGGTTGGGCTCTGTTGAATTGATGGCGTTTCCTTGCCCTGGTTGACCTTGCTACCGCT
GTTTCGATAATATTGAGCTAGTTGTGTTCCATCAGGCAAAGAACACAACGAAGATCCAGCGAAGG
CATGGAACAACGGTGACACGTCTGACAGGTACCATTGTCACTGTATGCAATCGAGCTGTTGGGAT
TTATGACCCATATTTACTTTTATTTTTACTGGTAGAAGAGGGTGGTATTTGTAGTGAAAATGGGG
ACCATTGCAGTCGACTTGTGGTGGTGATTGTCAGTAACGGATTGAGTAATGTGGCGAATGCCACT
CGAGTCAGAGTCCAGAATGTGGTATGTACGAATGGTGAAGAGGGA
Right flanking sequence: Indices 45899 -- 46398
AAGGGTGAGGAAAGAGTGCAAAATACCATGAACACATTACACACCAACAGCCACAAGACAACAAG
CAACAGTCAAAAGACCTCAAGTCCTACAAGACATAGATTGGCACCTATACTCCTCACTGTCGGTT
CAATTGCTTACTCGTCTGATCCAAAAAAAGTAGTCGACCAACACCTTTCTCCACTGTTGAATTCT
ATGCTGACAACCCAAAAAAGTAGTCGACACACCAGATTCTCAAGCCGAACTATAAATCTTAAATG
TCATTCCTTTCGCCTCCGCCACGGGTAACCTGCTGTGCTGAATTGCTTCCCTCCAGCGGTGGTGT
TACTCATTGCCTGGAATACAAATGCTGATTACTCAAGCACAATAATCCGGACCGCAGGGATCGAA
CTGAACACTGAAGTACATAGCTCGAGCCGAAAACGCAACCAGTGCGCTTCTGCCAAAGGCCATCA
CAGCCGAAAAAATTTGAATTTTTTCGGGTTGAGAGTACCCGAGTG
Found at i:45898 original size:12 final size:12
Alignment explanation
Indices: 45881--45905 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45871 GTGTGCAAGG
45881 GCAAGGAAGGGT
1 GCAAGGAAGGGT
45893 GCAAGGAAGGGT
1 GCAAGGAAGGGT
45905 G
1 G
45906 AGGAAAGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.52, T:0.08
Consensus pattern (12 bp):
GCAAGGAAGGGT
Left flanking sequence: Indices 45381 -- 45880
ACCCCCCCACCGCCTACTTTGAGTAGCCACGGATAGGTGGAAGGCCGTTGGTTGAGCTCAGGCTG
TTGGTTGGGCTCTGTTGAATTGATGGCGTTTCCTTGCCCTGGTTGACCTTGCTACCGCTGTTTCG
ATAATATTGAGCTAGTTGTGTTCCATCAGGCAAAGAACACAACGAAGATCCAGCGAAGGCATGGA
ACAACGGTGACACGTCTGACAGGTACCATTGTCACTGTATGCAATCGAGCTGTTGGGATTTATGA
CCCATATTTACTTTTATTTTTACTGGTAGAAGAGGGTGGTATTTGTAGTGAAAATGGGGACCATT
GCAGTCGACTTGTGGTGGTGATTGTCAGTAACGGATTGAGTAATGTGGCGAATGCCACTCGAGTC
AGAGTCCAGAATGTGGTATGTACGAATGGTGAAGAGGGAAAGTGTGCAAGAGTGCAAGCAAGTGT
GCAAGGGTGCTAGAAAGTGTGCAAGGGTGCAAGAGGTGTGCAAGG
Right flanking sequence: Indices 45906 -- 46405
AGGAAAGAGTGCAAAATACCATGAACACATTACACACCAACAGCCACAAGACAACAAGCAACAGT
CAAAAGACCTCAAGTCCTACAAGACATAGATTGGCACCTATACTCCTCACTGTCGGTTCAATTGC
TTACTCGTCTGATCCAAAAAAAGTAGTCGACCAACACCTTTCTCCACTGTTGAATTCTATGCTGA
CAACCCAAAAAAGTAGTCGACACACCAGATTCTCAAGCCGAACTATAAATCTTAAATGTCATTCC
TTTCGCCTCCGCCACGGGTAACCTGCTGTGCTGAATTGCTTCCCTCCAGCGGTGGTGTTACTCAT
TGCCTGGAATACAAATGCTGATTACTCAAGCACAATAATCCGGACCGCAGGGATCGAACTGAACA
CTGAAGTACATAGCTCGAGCCGAAAACGCAACCAGTGCGCTTCTGCCAAAGGCCATCACAGCCGA
AAAAATTTGAATTTTTTCGGGTTGAGAGTACCCGAGTGAAAAGTG
Found at i:49349 original size:18 final size:20
Alignment explanation
Indices: 49326--49362 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
49316 TTTCGGTAAT
49326 CCCCAC-GTCACCA-ACAAA
1 CCCCACAGTCACCACACAAA
49344 CCCCACAGTCACCACACAA
1 CCCCACAGTCACCACACAA
49363 TCACCAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.38, C:0.51, G:0.05, T:0.05
Consensus pattern (20 bp):
CCCCACAGTCACCACACAAA
Left flanking sequence: Indices 48826 -- 49325
TTGTCTAAACTGGGTCCGTAGAAACTTGAACAGTGCATTTTGAAGCACAACAATTGACAAGCCAT
CCAGATACATAAGCCATCACTAATCTAAGCCATCACTTAAGAACTTAGTGACAGCTGGGGGGCCG
CGAGCGGCGCCCCCCAGACCCCCCAACGCCTAATTTCGAGACTTTTTACGACAAGTGCAACGTCC
CGTCCAAAACATGGAGATCTTTGATTGAGAACGCTCCCTCGAAATAATTCAGACAATGTCCACGG
TCATATAACTAACCACCGAGCCACCTTTACTTTCCTACGGTCATTGTCCGACCGCTAAGCCATAG
TTATTGCTACACGTTATCTACATCTTAAACTCACACAGCCGAGCTCACAAAGACTACCAAGTAGG
CACTCAAAGACCCAGCACGGTACCACCCACTCAATCTGAACACCCCAACCGCCACTGCCTGCCTA
TCTCTGCTACACCCACTCACCTTACCAATCGCTTCTTTCGGTAAT
Right flanking sequence: Indices 49363 -- 49862
TCACCAAACAATCACCACTAATCTCATCTCCACCCCACACAACTAAGCGCTAGGGGGGTCTGGGG
GGACGCCGCTTGCGGTCCCCCCAGCCAGGCCCGCCTTTTCTCTCCACACCCACTTTCTTCCCACC
ACCTTTCTTTACCCGTACGCGCACCACGCGTCTCCACGCAAACACACCGTCCACCGCAACCCCAC
CGCAACTCCACCCAAATCCAACCCAACCCTTTCCTAGACCAACCCCAGACCCTATCCACAAACAC
ACTCCTCCCACCCCTCTCAACCACATCACCCACCTACTTCCACTCCCACCTTTCCACCTCCACCT
TTTCCCCCACCGTTCTGAGCCCGCGGCCCCCTTAGAACACGTAGTTTTTCACCACGCGGACGAAC
CAACGACACGCAACATGAGTGGGTACACCATGATCTACGAGCCCAACGCCGCGGCCAAAACGCTG
GTGCTGGAGTTCAAGCAATTGTTGGAGAAGGGTTCCGACGAGGTC
Found at i:49366 original size:11 final size:11
Alignment explanation
Indices: 49347--49380 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
49337 CAACAAACCC
*
49347 CACAGTCACCA
1 CACAATCACCA
49358 CACAATCACCA
1 CACAATCACCA
*
49369 AACAATCACCA
1 CACAATCACCA
49380 C
1 C
49381 TAATCTCATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.44, C:0.44, G:0.03, T:0.09
Consensus pattern (11 bp):
CACAATCACCA
Left flanking sequence: Indices 48847 -- 49346
AAACTTGAACAGTGCATTTTGAAGCACAACAATTGACAAGCCATCCAGATACATAAGCCATCACT
AATCTAAGCCATCACTTAAGAACTTAGTGACAGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCC
CCCAACGCCTAATTTCGAGACTTTTTACGACAAGTGCAACGTCCCGTCCAAAACATGGAGATCTT
TGATTGAGAACGCTCCCTCGAAATAATTCAGACAATGTCCACGGTCATATAACTAACCACCGAGC
CACCTTTACTTTCCTACGGTCATTGTCCGACCGCTAAGCCATAGTTATTGCTACACGTTATCTAC
ATCTTAAACTCACACAGCCGAGCTCACAAAGACTACCAAGTAGGCACTCAAAGACCCAGCACGGT
ACCACCCACTCAATCTGAACACCCCAACCGCCACTGCCTGCCTATCTCTGCTACACCCACTCACC
TTACCAATCGCTTCTTTCGGTAATCCCCACGTCACCAACAAACCC
Right flanking sequence: Indices 49381 -- 49880
TAATCTCATCTCCACCCCACACAACTAAGCGCTAGGGGGGTCTGGGGGGACGCCGCTTGCGGTCC
CCCCAGCCAGGCCCGCCTTTTCTCTCCACACCCACTTTCTTCCCACCACCTTTCTTTACCCGTAC
GCGCACCACGCGTCTCCACGCAAACACACCGTCCACCGCAACCCCACCGCAACTCCACCCAAATC
CAACCCAACCCTTTCCTAGACCAACCCCAGACCCTATCCACAAACACACTCCTCCCACCCCTCTC
AACCACATCACCCACCTACTTCCACTCCCACCTTTCCACCTCCACCTTTTCCCCCACCGTTCTGA
GCCCGCGGCCCCCTTAGAACACGTAGTTTTTCACCACGCGGACGAACCAACGACACGCAACATGA
GTGGGTACACCATGATCTACGAGCCCAACGCCGCGGCCAAAACGCTGGTGCTGGAGTTCAAGCAA
TTGTTGGAGAAGGGTTCCGACGAGGTCAAGGTCGACGCAATGAAG
Found at i:55187 original size:11 final size:11
Alignment explanation
Indices: 55167--55206 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
55157 ACCAAACCAA
*
55167 CCACCCCGCCC
1 CCACCACGCCC
*
55178 CCACCTCGCCC
1 CCACCACGCCC
*
55189 CCACCACACCC
1 CCACCACGCCC
55200 CCACCAC
1 CCACCAC
55207 ACACCACACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.17, C:0.75, G:0.05, T:0.03
Consensus pattern (11 bp):
CCACCACGCCC
Left flanking sequence: Indices 54667 -- 55166
ACCCGACGTCACATCTGACCGAGGAGTACAAGGAAATGGTGAAGAATATGGAGAAGGTGTAAATA
ACTTGAGTAATCTGATGCCACCAGGAAGTACCATTCAGTGGATCTCGTGTTCTTAAATAGGTATA
CATCTATCATTTGCTTCGTCGTCACTAGTTTATCTCCTCAAGTGTCTTACATTAAATATTCGTGA
CCACGTTTGATTCAATTTTCGACATTTTGCAGCTTATTGACGAAAACGGAAATATCGCATGGAGT
ATGTTTAGGCGAAGAATAAAGCATGGTAATTCAGGTAAAATAGGGAAAACAAATCTCTGAGTGCA
ACCACTGGGTAAATCAAACCAAACAATCACCCTCATCGCCCCACTTCAAAGCCCCGACGTGTCGC
TTCCCTGCATGGCCCCTGGCTCAGCCGACATGTCAATCGCGCTAGCGAATGTTCCGAACCAGAAA
TCAACGCCAGATTGTGTCAAAACCACCACCAACGCACCAAACCAA
Right flanking sequence: Indices 55207 -- 55706
ACACCACACCCTCTCTCTGATCCACCTACCCCGTCGCCTCCCCTGGACGCGGTTGCCACACGCTC
CAGTGGCCCACCTGCATACGCCTGGTTGCGGGGGAACAAATCATTCAACCGCAAGAACCACGATC
AAACCCGATGGAATGGCAGTAACCACCGTCTCGCATGACCAGGCGCTGGCGGGCGTGTCCACGAC
CAAGCTCGTGTTCATCTTCGGCGCCTTCCTTGTGCTGCTTACGCTGTTCGTCACCCAGACCGAGT
TCACCTCCCAGGCCTACCAGCGAGGATTCTCGGAACCGATCGTATTGTTGTTTGTGACCCACGGG
ATGTGGTGGATTTTGTGGCCCATCCAGGCGGTGGCCACCGCTGTGTGGCGTACCGGCCAGAAATG
GCGCTCGCTGGCCCGCTCGGTGCACATCCCCACCGCACTGGGCATGGCGCCCACGATGACGCTGT
CCCAGTACGAGCGGCTCCCGTTGGAGCTGCAGCCCGACCAGGGGG
Found at i:60810 original size:16 final size:16
Alignment explanation
Indices: 60789--60819 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
60779 CTCTACTAGG
60789 CAGTGAGCCAGCGAGC
1 CAGTGAGCCAGCGAGC
60805 CAGTGAGCCAGCGAG
1 CAGTGAGCCAGCGAG
60820 GGTGGTTACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.39, T:0.06
Consensus pattern (16 bp):
CAGTGAGCCAGCGAGC
Left flanking sequence: Indices 60289 -- 60788
CAAATGGACGTCTCCGCTGTCGCTGGCGGACAAGTGGCGCGACCTCAACGACGTTGCGGCCGAGG
TGTGCAAGGGGTACCAGCTCACCGCGGTGTTGGAGGCCAAAAAGGACATCATTTTACGTGCGCTC
TACCCGCGGTTGGACGTCAATGTGTCGAAACAGCTCAATCACTTGTTGAAGTCGCCGTTCTGTGT
GCACCCTGCCACCGGGAACATCTGTGTGCCGTTTGACCCGAAGCAAAACCTTTCGGGGGACGCTG
CGGACGACGCCTACGGGTTCAACCCCACCACGCTGCCCAAGTTGATTGACATCCAGCGCGAGTTG
GAGGCGTGGCGTGGCGATAGCGACAACGAGCACTGGAAGAAGACGAGCTTGAAGCCGTACGTCGA
GTACTTTGGTCGCTACGTCACCGAGTTGTACAAGAGCGAGATTCTGAAGAAGCGCCGCGCGGAGG
ACGAGCCGTCGCCGGTGGGTGATCTCACGGGCGAGCTCTACTAGG
Right flanking sequence: Indices 60820 -- 61319
GGTGGTTACGATCAACACCCTGGACGCCGGTAGATTAAGGTGACAGGTCCGGTGCAATGCCTCAA
GTTTATAATAGCGGCCTACACTGAGGCTAGGAGTACATAATAAGAGCATACATTAGAACACATTC
GCACTCGAGTATCAATGGATTGCACTAGTTGTTCCCATTTGAAGCTCCACCCTTTTCAGCGGGAC
GCTTTCTCCCTTTCCTCCTACTTTTCTTCCTTCTTCCTCTACTTACTTCTCTTCCTACCCTCTTC
CTTCCCTCCTTCATACAGTGCGTGAAAAATCATAACCAGACCATCACCACCACCCACACATCCAC
CCCCACCATGGAATTGCTTCCAGAGGGCCAGCAGAACACCAGCGAGGTGACGCTTGCCGACCAGA
AGAAGATCAACAAGTTCTCCACCTTGATCAACCAGCGCGACGAGTTGGACGCCCAGCTCACCAAG
TACAAAACGGAAAAGGAGTACTTTGACGACTTGGGGCTCGAGATC
Found at i:61788 original size:18 final size:18
Alignment explanation
Indices: 61765--61810 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
61755 CTCTCTCTCC
61765 TTTTCAGTCATCTCCTCA
1 TTTTCAGTCATCTCCTCA
* *
61783 TTTTCAGTCATCTTCTCC
1 TTTTCAGTCATCTCCTCA
*
61801 TTTTCCGTCA
1 TTTTCAGTCA
61811 GCTTTTCTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.13, C:0.33, G:0.07, T:0.48
Consensus pattern (18 bp):
TTTTCAGTCATCTCCTCA
Left flanking sequence: Indices 61265 -- 61764
GCTCACCAAGTACAAAACGGAAAAGGAGTACTTTGACGACTTGGGGCTCGAGATCGAGTTGTTGG
ACGAGGACGAGAAGATCCAGTACAAGGTGGGCGACGCGTTTGTGTTCTTGCCTGTGCTGACCGCG
GTCGACAAGATCGAGAAGGAAAACGACGAGTTGGACACACGCATCCTGAAGCTCGACGACGAGAT
CGAGGCGATCGACGACCAGTTGGCGGAGTTGAAGAAGGAGTTGTACGCCAAGTTCGGCAACAACA
TCAACTTAGAGCGCTGAAAGCCCACAAAGCTAGTTTTGATAGAACTACTTTCAAGCTGTTGAACC
ATACACCCATCGAATGCATTACGCAACGGACTACGGTCCTCCCCATACAAATAATACATGCTTAT
TACAGGTGCTAGTGTTACATAATACGGTAGCTGCCTCTGCCATCCGGCTGGGCTCACTCACCGGT
CGACTCTGGTCCAGGCTTCCCCAGCTTTCTCTATCCTCTCTCTCC
Right flanking sequence: Indices 61811 -- 62310
GCTTTTCTCCCTCTTCTCACTCCTAATCCTCATCGCTATCCTCGTAGGTCGGGATGTCGTCCTGG
TCGGCTGCCGGCGCCGCCTGGGGAGCCGGAGCGGGTTTCGGACGCTTGGCCGGAGGCTCCTCCTT
GGGCGGCGGGCGCGGCGGCTGTTTCTGCTGCGCCATGCGGTTCTTCCACGCCTTCTGGATGGCGG
GACACATGTCCACCACCTCCTTTTCCCGCACTCCGTCCTTGATCGACTTCAAGATCTTCTCCACC
ACCACCAAGTGGTTGCCGTTGCGCTTGTCGTTGCGGAAGCGCATCATCTCCCAGAACCCGGGCTG
GGCTTGCAGCTGGCGACACTCGACGATTCTGCCCTGGAGAGGCTCCTGGAGCGCCTTGAGACGCT
CCCAGTCGTCGGGATCAAGTGTCATGTGGGCAAACGGGGTGTGTACGGCGCCGCCCTCCCACACC
TTGAGCTTGATAACGTCTGGTTTCGAGTCGTAGTCGGTATAGGTT
Found at i:68835 original size:17 final size:17
Alignment explanation
Indices: 68813--68848 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
68803 AAAGTAAACC
68813 AATTGCTAGCCATTCGG
1 AATTGCTAGCCATTCGG
68830 AATTGCTAGCCATTCGG
1 AATTGCTAGCCATTCGG
68847 AA
1 AA
68849 GACAAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (17 bp):
AATTGCTAGCCATTCGG
Left flanking sequence: Indices 68313 -- 68812
GCGAGAGAGGCAGAAAAGGTCGGAGGTGGTGAAGAGACGGGTGGCGCTTCCCGAACCTTGAAAGG
TGCTGGTATGATGCTGGTTCATTGATGGTTGGCGGTGTGGTTGGCGGTTGGCGGTTGGTGTTTTC
CCTCACTTTTAGGCTGGCCATCCCAGAGACACGGTGAGTACCTTGCAGCTGGCCAATGGGGTAGT
CGTCCGAGCGGGCTCTATTGTTCACGAGGTTGCAAGGCTCAGCATTCTGCGACAAGTTTGGGAAG
GGTATGTGTGGGCACTGGCGCGAGGGTCTAGAGGAAGCAATTGCGTATCCTTGTAGGCCTACGAC
GGAGCGAGTGTCAAGCCTTGTCACTACTACTCAATCCAACCATAGCCACTAATCCTGCTGGTTTA
GTTGCATGTTCGCCTCGTATCCTTTAGGCGGCTGCGCTAGTGTACAGCGAAGCCAGTGGGCTCAT
AGCAGGGCGAATTCAAAGAGCTAAGTTGGCACAAGAAAGTAAACC
Right flanking sequence: Indices 68849 -- 69348
GACAAACAGTGTTCCGGCCAACGCACCTCGTTTTCCGCTTCCACTGACTCCCAATGACTCGCTCC
TCGCGTCGTCTTTCTCTAACGGTTTACAGCCCTGGTCTCATTTTTCACTGGCAAGCAAAGCCCAG
TCAATTGGGTAGCTCCATACCCACTCCAACCCTCTCGAGGCACTACCCACCAATGCGCCCGCTGC
GGCTCCGTCTCCCACCCGCCCCGGACCCCAGCGGCACGTGTGTCTGCGTATACATATCGCATGAT
TGGGATTGCTGTGGGTACGAAACCTCGGGGATAAAAACGGACCACAGTGGGCGGCCACAAGCGGT
CGGCAAAGAAAAGAAGAAACCGGCGTACATACGTTGTAGACCCATCTACACTGTTTGAACACACT
TCCGATCAATTCGTAGATCTCGCGTGAGTGTGGCTCGAGAAACTGTGTCTCGTGCCCACTCCAAA
CACCTACGACGGACCCGTGTACCACCCCCACTCCCCTCCGCCCTC
Found at i:72704 original size:21 final size:19
Alignment explanation
Indices: 72649--72709 Score: 72
Period size: 18 Copynumber: 3.2 Consensus size: 19
72639 CCACGCCCGC
*
72649 GAAGGAGCCCG-CGAAGAA
1 GAAGGAGCCGGCCGAAGAA
*
72667 GAAGGAGCTGGCC-AAGAA
1 GAAGGAGCCGGCCGAAGAA
72685 GAAGGAGCCGGCTCCGAAGAA
1 GAAGGAGCCGG--CCGAAGAA
72706 GAAG
1 GAAG
72710 AAGGAGGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 24 0.67
19 1 0.03
20 2 0.06
21 9 0.25
ACGTcount: A:0.38, C:0.20, G:0.39, T:0.03
Consensus pattern (19 bp):
GAAGGAGCCGGCCGAAGAA
Left flanking sequence: Indices 72149 -- 72648
ACCAAACAACGGTCGCCGGCGCTCGACCTCGCCGACCCCGAGGACGACTCGCTGTACGAGCTGGG
CAAGGTCGCCGCCACCAACGGGCCCACCGAGTGCAAGCACTGCTTGACGTCGCACCTGATCAAGT
GGTTCCGGCTCACGGGCCAGGACCCGCCCAAAAAGAAGGGCGACCCCGTGGTGGGGTTGTGCAAC
CGGTGTGCACGGCTCTGGCGACGGTATGCGATCGTTTGGGAGGATCCCGACGAGGTGATGCGGCG
CCAGGCGCGTCTTGGGCGTCGCCGGATCGATCCCGAGGTGTGGGACGACGCAGTGGCCATCTTGA
AGGAGGTGGACGGCGAGCTGGCTGCGCCCAGCGTGGTGCCCACGCCCGCAGCGACGCCTCCGGTG
ACCACACCCGACAAAAAGAAGCGCAAAACGCCTCCTGCCGAGCCGGTCGCCGCCAAGCGGGCCAA
GAAACCGGTGAAGAAGGAGCCCGTGAAGAAACAGCCCACGCCCGC
Right flanking sequence: Indices 72710 -- 73209
AAGGAGGTGAAGAAGGAGGTGAAAGAGGAAGCAGAGGCTGAACCGAAGAAGAAGCCCAAGCCCAA
GCTGGACGAGCCCGACCGCAAGCGCAAGAAGGGCGAGCCCGCGCAGGAGCCCGACCTGATCAAGA
AGGCGTTCCTCGTCAACCCGAACTACCCAGCACCCGCGGTCGAGCCGCCGTTGCGGGCACAGGTG
GCCACGCTCACCGACCCCGCGGCGATCCAGACGTTTCTCCAGCACTACAAACAGAACCAGAAGCT
CGAGGCCATGGCCCAGATCGCCCACATCCGGCTCCCCGACGGGATGCAGGTGGCGATCCCGCGCA
GTGCCAACCTGAAGTGTGGGTTCTGCCTCGAGGGGAACCCCCAGGAGAAGGAGTTGTTGATCTGC
AGCTTGTGTCGGGTGGGCGTGCACGCGCTGTGTGCGGGCGTCACCATCCCCGACCGGGTTCCCAA
GCCGATCCACGAGTGGTTGTGCGAGACGTGCACCAACGACTTGAA
Found at i:72738 original size:12 final size:12
Alignment explanation
Indices: 72706--72732 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72696 CTCCGAAGAA
72706 GAAGAAGGAGGT
1 GAAGAAGGAGGT
72718 GAAGAAGGAGGT
1 GAAGAAGGAGGT
72730 GAA
1 GAA
72733 AGAGGAAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.48, T:0.07
Consensus pattern (12 bp):
GAAGAAGGAGGT
Left flanking sequence: Indices 72206 -- 72705
GAGCTGGGCAAGGTCGCCGCCACCAACGGGCCCACCGAGTGCAAGCACTGCTTGACGTCGCACCT
GATCAAGTGGTTCCGGCTCACGGGCCAGGACCCGCCCAAAAAGAAGGGCGACCCCGTGGTGGGGT
TGTGCAACCGGTGTGCACGGCTCTGGCGACGGTATGCGATCGTTTGGGAGGATCCCGACGAGGTG
ATGCGGCGCCAGGCGCGTCTTGGGCGTCGCCGGATCGATCCCGAGGTGTGGGACGACGCAGTGGC
CATCTTGAAGGAGGTGGACGGCGAGCTGGCTGCGCCCAGCGTGGTGCCCACGCCCGCAGCGACGC
CTCCGGTGACCACACCCGACAAAAAGAAGCGCAAAACGCCTCCTGCCGAGCCGGTCGCCGCCAAG
CGGGCCAAGAAACCGGTGAAGAAGGAGCCCGTGAAGAAACAGCCCACGCCCGCGAAGGAGCCCGC
GAAGAAGAAGGAGCTGGCCAAGAAGAAGGAGCCGGCTCCGAAGAA
Right flanking sequence: Indices 72733 -- 73232
AGAGGAAGCAGAGGCTGAACCGAAGAAGAAGCCCAAGCCCAAGCTGGACGAGCCCGACCGCAAGC
GCAAGAAGGGCGAGCCCGCGCAGGAGCCCGACCTGATCAAGAAGGCGTTCCTCGTCAACCCGAAC
TACCCAGCACCCGCGGTCGAGCCGCCGTTGCGGGCACAGGTGGCCACGCTCACCGACCCCGCGGC
GATCCAGACGTTTCTCCAGCACTACAAACAGAACCAGAAGCTCGAGGCCATGGCCCAGATCGCCC
ACATCCGGCTCCCCGACGGGATGCAGGTGGCGATCCCGCGCAGTGCCAACCTGAAGTGTGGGTTC
TGCCTCGAGGGGAACCCCCAGGAGAAGGAGTTGTTGATCTGCAGCTTGTGTCGGGTGGGCGTGCA
CGCGCTGTGTGCGGGCGTCACCATCCCCGACCGGGTTCCCAAGCCGATCCACGAGTGGTTGTGCG
AGACGTGCACCAACGACTTGAAACCGTTGCACCTGACGGTGTACC
Found at i:73620 original size:15 final size:15
Alignment explanation
Indices: 73582--73626 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
73572 AGGTGGAGGC
73582 GGAGGCACCAAAGGT
1 GGAGGCACCAAAGGT
*
73597 GGTGG---CAAAGGT
1 GGAGGCACCAAAGGT
73609 GGAGGCACCAAAGGT
1 GGAGGCACCAAAGGT
73624 GGA
1 GGA
73627 AGAAGTGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 11 0.44
15 14 0.56
ACGTcount: A:0.31, C:0.16, G:0.44, T:0.09
Consensus pattern (15 bp):
GGAGGCACCAAAGGT
Left flanking sequence: Indices 73082 -- 73581
AAGGAGTTGTTGATCTGCAGCTTGTGTCGGGTGGGCGTGCACGCGCTGTGTGCGGGCGTCACCAT
CCCCGACCGGGTTCCCAAGCCGATCCACGAGTGGTTGTGCGAGACGTGCACCAACGACTTGAAAC
CGTTGCACCTGACGGTGTACCTGTGCTGCTTGTGCCACCGTCCCGCGGCGGTGGACGACCAGGGA
GCCTCGTACTTGAAGCCGGTGTTTGAGCTGGGCAAGTGGGTCCACTTGATGTGTGCGATGTTTGA
GCTGTCGCGGATTGTGCTTCGACCGCCTCCTCCGCTGATGGCGCCGCGCCGCAAGCTCAACCGCG
AGGAGATGAAGCAGACCGAGGCGGTGTTGGACAGCATCCACCGGGTGGTGGCGTTGGAGCTGGTG
TCGCGGATCTTTGTCGACCACGCCCACCACCAGTGTGGGTTGTGCAACCAGAAGAATGGGGCAAT
GGTGCAGTGCTATGAGTGTACAACGGGGAAGGCGAAGGTGGAGGC
Right flanking sequence: Indices 73627 -- 74126
AGAAGTGACTGTGAAGGTAAAGAGTGACGAGAAGAATGATGTGAAGATGGATGAGGTGAAGATGA
TGGACGAGGTGAAGATGGAGAATGGTGAGAAATCCGGGCCCCTGGAGGAGCCTGTGACCAACGGG
ACTGCGAACGGGACACTGAACGGTACTGTCGAGTCCGGTAAGCCAGAAGACAATCTCCTGGTGGG
CACTAGTACACCAGCAAACGTTTCTTCTACCCTGACCACCACCCCTACGATCACCGACCCAGTCG
CCAACTCTGCCAACGACGCGACCGCCAACCCAATCACAAACTCCACAGCCAACTCTACAGCCAAC
TCTACAACCAATTCTACCACCACCAACTCCTCCTCCACCACCACCACACCCACTCAGCTCAACGG
CTCACACACCTCCACCACGTGGTACCACGTCGCTTGTGCCCACCGTGACCCCCGGTTCACCCTCG
GTTTCCGGCTCGAACCGGCCGAGGACGGCGACACCAACGTCGTCA
Found at i:73685 original size:15 final size:15
Alignment explanation
Indices: 73662--73710 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
73652 GACGAGAAGA
*
73662 ATGATGTGAAGATGG
1 ATGAGGTGAAGATGG
73677 ATGAGGTGAAGATGATGG
1 ATGAGGTG-A-A-GATGG
*
73695 ACGAGGTGAAGATGG
1 ATGAGGTGAAGATGG
73710 A
1 A
73711 GAATGGTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
15 13 0.45
16 2 0.07
17 2 0.07
18 12 0.41
ACGTcount: A:0.35, C:0.02, G:0.43, T:0.20
Consensus pattern (15 bp):
ATGAGGTGAAGATGG
Left flanking sequence: Indices 73162 -- 73661
CAAGCCGATCCACGAGTGGTTGTGCGAGACGTGCACCAACGACTTGAAACCGTTGCACCTGACGG
TGTACCTGTGCTGCTTGTGCCACCGTCCCGCGGCGGTGGACGACCAGGGAGCCTCGTACTTGAAG
CCGGTGTTTGAGCTGGGCAAGTGGGTCCACTTGATGTGTGCGATGTTTGAGCTGTCGCGGATTGT
GCTTCGACCGCCTCCTCCGCTGATGGCGCCGCGCCGCAAGCTCAACCGCGAGGAGATGAAGCAGA
CCGAGGCGGTGTTGGACAGCATCCACCGGGTGGTGGCGTTGGAGCTGGTGTCGCGGATCTTTGTC
GACCACGCCCACCACCAGTGTGGGTTGTGCAACCAGAAGAATGGGGCAATGGTGCAGTGCTATGA
GTGTACAACGGGGAAGGCGAAGGTGGAGGCGGAGGCACCAAAGGTGGTGGCAAAGGTGGAGGCAC
CAAAGGTGGAAGAAGTGACTGTGAAGGTAAAGAGTGACGAGAAGA
Right flanking sequence: Indices 73711 -- 74210
GAATGGTGAGAAATCCGGGCCCCTGGAGGAGCCTGTGACCAACGGGACTGCGAACGGGACACTGA
ACGGTACTGTCGAGTCCGGTAAGCCAGAAGACAATCTCCTGGTGGGCACTAGTACACCAGCAAAC
GTTTCTTCTACCCTGACCACCACCCCTACGATCACCGACCCAGTCGCCAACTCTGCCAACGACGC
GACCGCCAACCCAATCACAAACTCCACAGCCAACTCTACAGCCAACTCTACAACCAATTCTACCA
CCACCAACTCCTCCTCCACCACCACCACACCCACTCAGCTCAACGGCTCACACACCTCCACCACG
TGGTACCACGTCGCTTGTGCCCACCGTGACCCCCGGTTCACCCTCGGTTTCCGGCTCGAACCGGC
CGAGGACGGCGACACCAACGTCGTCAAGCTCGAGCCGGCGTCCGATGCCACCCCCGAAGACCCTG
TGCCGCTGGGGATCCTCGTGCCCACCATGACTTGCATGGACCACT
Found at i:73695 original size:18 final size:18
Alignment explanation
Indices: 73672--73708 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
73662 ATGATGTGAA
*
73672 GATGGATGAGGTGAAGAT
1 GATGGACGAGGTGAAGAT
73690 GATGGACGAGGTGAAGAT
1 GATGGACGAGGTGAAGAT
73708 G
1 G
73709 GAGAATGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.46, T:0.19
Consensus pattern (18 bp):
GATGGACGAGGTGAAGAT
Left flanking sequence: Indices 73172 -- 73671
CACGAGTGGTTGTGCGAGACGTGCACCAACGACTTGAAACCGTTGCACCTGACGGTGTACCTGTG
CTGCTTGTGCCACCGTCCCGCGGCGGTGGACGACCAGGGAGCCTCGTACTTGAAGCCGGTGTTTG
AGCTGGGCAAGTGGGTCCACTTGATGTGTGCGATGTTTGAGCTGTCGCGGATTGTGCTTCGACCG
CCTCCTCCGCTGATGGCGCCGCGCCGCAAGCTCAACCGCGAGGAGATGAAGCAGACCGAGGCGGT
GTTGGACAGCATCCACCGGGTGGTGGCGTTGGAGCTGGTGTCGCGGATCTTTGTCGACCACGCCC
ACCACCAGTGTGGGTTGTGCAACCAGAAGAATGGGGCAATGGTGCAGTGCTATGAGTGTACAACG
GGGAAGGCGAAGGTGGAGGCGGAGGCACCAAAGGTGGTGGCAAAGGTGGAGGCACCAAAGGTGGA
AGAAGTGACTGTGAAGGTAAAGAGTGACGAGAAGAATGATGTGAA
Right flanking sequence: Indices 73709 -- 74208
GAGAATGGTGAGAAATCCGGGCCCCTGGAGGAGCCTGTGACCAACGGGACTGCGAACGGGACACT
GAACGGTACTGTCGAGTCCGGTAAGCCAGAAGACAATCTCCTGGTGGGCACTAGTACACCAGCAA
ACGTTTCTTCTACCCTGACCACCACCCCTACGATCACCGACCCAGTCGCCAACTCTGCCAACGAC
GCGACCGCCAACCCAATCACAAACTCCACAGCCAACTCTACAGCCAACTCTACAACCAATTCTAC
CACCACCAACTCCTCCTCCACCACCACCACACCCACTCAGCTCAACGGCTCACACACCTCCACCA
CGTGGTACCACGTCGCTTGTGCCCACCGTGACCCCCGGTTCACCCTCGGTTTCCGGCTCGAACCG
GCCGAGGACGGCGACACCAACGTCGTCAAGCTCGAGCCGGCGTCCGATGCCACCCCCGAAGACCC
TGTGCCGCTGGGGATCCTCGTGCCCACCATGACTTGCATGGACCA
Found at i:73946 original size:12 final size:12
Alignment explanation
Indices: 73925--73968 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
73915 CCCAATCACA
*
73925 AACTCCACAGCC
1 AACTCTACAGCC
73937 AACTCTACAGCC
1 AACTCTACAGCC
*
73949 AACTCTACAACC
1 AACTCTACAGCC
*
73961 AATTCTAC
1 AACTCTAC
73969 CACCACCAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.36, C:0.41, G:0.05, T:0.18
Consensus pattern (12 bp):
AACTCTACAGCC
Left flanking sequence: Indices 73425 -- 73924
AGGCGGTGTTGGACAGCATCCACCGGGTGGTGGCGTTGGAGCTGGTGTCGCGGATCTTTGTCGAC
CACGCCCACCACCAGTGTGGGTTGTGCAACCAGAAGAATGGGGCAATGGTGCAGTGCTATGAGTG
TACAACGGGGAAGGCGAAGGTGGAGGCGGAGGCACCAAAGGTGGTGGCAAAGGTGGAGGCACCAA
AGGTGGAAGAAGTGACTGTGAAGGTAAAGAGTGACGAGAAGAATGATGTGAAGATGGATGAGGTG
AAGATGATGGACGAGGTGAAGATGGAGAATGGTGAGAAATCCGGGCCCCTGGAGGAGCCTGTGAC
CAACGGGACTGCGAACGGGACACTGAACGGTACTGTCGAGTCCGGTAAGCCAGAAGACAATCTCC
TGGTGGGCACTAGTACACCAGCAAACGTTTCTTCTACCCTGACCACCACCCCTACGATCACCGAC
CCAGTCGCCAACTCTGCCAACGACGCGACCGCCAACCCAATCACA
Right flanking sequence: Indices 73969 -- 74468
CACCACCAACTCCTCCTCCACCACCACCACACCCACTCAGCTCAACGGCTCACACACCTCCACCA
CGTGGTACCACGTCGCTTGTGCCCACCGTGACCCCCGGTTCACCCTCGGTTTCCGGCTCGAACCG
GCCGAGGACGGCGACACCAACGTCGTCAAGCTCGAGCCGGCGTCCGATGCCACCCCCGAAGACCC
TGTGCCGCTGGGGATCCTCGTGCCCACCATGACTTGCATGGACCACTCGCCACCGGTGTTGCCCT
TCCGCCAGCTTGCTAAGCGCAACGGAGCGGGGCCCGTGCGACCTTTGGTCCAGCTCTACTGGGAG
GACCTCGCAAAACAGCTTCCCAAGACCCTGGGCCCCGTGCTGCGACTGCTCCAGTACATCGAAAA
CTACATCGCGTACTACGGGCCAAAGGCAACCATCGACCGCGAGATAGGCACCAACCAGCGGTGCG
ACTCGTGTGGGTCGACCATGTCCCCCATCTGGTGGGGGTCCACCT
Found at i:73973 original size:12 final size:12
Alignment explanation
Indices: 73925--73973 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
73915 CCCAATCACA
* *
73925 AACTCCACAGCC
1 AACTCTACAACC
*
73937 AACTCTACAGCC
1 AACTCTACAACC
73949 AACTCTACAACC
1 AACTCTACAACC
* *
73961 AATTCTACCACC
1 AACTCTACAACC
73973 A
1 A
73974 CCAACTCCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.37, C:0.43, G:0.04, T:0.16
Consensus pattern (12 bp):
AACTCTACAACC
Left flanking sequence: Indices 73425 -- 73924
AGGCGGTGTTGGACAGCATCCACCGGGTGGTGGCGTTGGAGCTGGTGTCGCGGATCTTTGTCGAC
CACGCCCACCACCAGTGTGGGTTGTGCAACCAGAAGAATGGGGCAATGGTGCAGTGCTATGAGTG
TACAACGGGGAAGGCGAAGGTGGAGGCGGAGGCACCAAAGGTGGTGGCAAAGGTGGAGGCACCAA
AGGTGGAAGAAGTGACTGTGAAGGTAAAGAGTGACGAGAAGAATGATGTGAAGATGGATGAGGTG
AAGATGATGGACGAGGTGAAGATGGAGAATGGTGAGAAATCCGGGCCCCTGGAGGAGCCTGTGAC
CAACGGGACTGCGAACGGGACACTGAACGGTACTGTCGAGTCCGGTAAGCCAGAAGACAATCTCC
TGGTGGGCACTAGTACACCAGCAAACGTTTCTTCTACCCTGACCACCACCCCTACGATCACCGAC
CCAGTCGCCAACTCTGCCAACGACGCGACCGCCAACCCAATCACA
Right flanking sequence: Indices 73974 -- 74473
CCAACTCCTCCTCCACCACCACCACACCCACTCAGCTCAACGGCTCACACACCTCCACCACGTGG
TACCACGTCGCTTGTGCCCACCGTGACCCCCGGTTCACCCTCGGTTTCCGGCTCGAACCGGCCGA
GGACGGCGACACCAACGTCGTCAAGCTCGAGCCGGCGTCCGATGCCACCCCCGAAGACCCTGTGC
CGCTGGGGATCCTCGTGCCCACCATGACTTGCATGGACCACTCGCCACCGGTGTTGCCCTTCCGC
CAGCTTGCTAAGCGCAACGGAGCGGGGCCCGTGCGACCTTTGGTCCAGCTCTACTGGGAGGACCT
CGCAAAACAGCTTCCCAAGACCCTGGGCCCCGTGCTGCGACTGCTCCAGTACATCGAAAACTACA
TCGCGTACTACGGGCCAAAGGCAACCATCGACCGCGAGATAGGCACCAACCAGCGGTGCGACTCG
TGTGGGTCGACCATGTCCCCCATCTGGTGGGGGTCCACCTGTCAG
Found at i:79187 original size:16 final size:16
Alignment explanation
Indices: 79166--79197 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79156 CACCGTTTGT
79166 TTTCAGATCCCGAGTC
1 TTTCAGATCCCGAGTC
79182 TTTCAGATCCCGAGTC
1 TTTCAGATCCCGAGTC
79198 CATGCAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (16 bp):
TTTCAGATCCCGAGTC
Left flanking sequence: Indices 78666 -- 79165
TATTCCTCTGTCGGTCACTCTCCGTACGATACTCTTGGATGGCAAAATTGTATTATCGTACAAAG
GGAGAGTAGTTCTCACAAGTCCAGCAGTGACAAGCTCAGAGCTCTGTTACTTCCTTCAGCAGTGA
TGACATTTTGCTTTGCGACCTTCGATGATTCTCTGATTGGCCTTGCGCAAATGTCGTGTGTTAGT
GTTGCTCAGGAAATGCAAGCAGTGTCGTCAAAAGCAGTAGCGCCATAGGCTAATGGTTTTTAGGC
TTTTCTCTCTTTCCAACGCTCAGATTAACCGGTTGTCCATCCGTTCATGTCATGTGGAACGGTTA
CAAGTAAGGAATTTCAATATTTTTTAAACCCGATAAATAAAGTTTGTGTTGGGCAAATACCATTT
TGAAGACTACCACCTCATATCCCATCATTTCCTCAATCCCTGAGTACTTGGTTAACTTCCAAGTA
CCTAGATCCCCATTGCCGATCACCTGGTTTCATCTCACCGTTTGT
Right flanking sequence: Indices 79198 -- 79697
CATGCAAGTTTATTTACCCCTACTTCTCGAGAGAGTTTCCAGGTTCTCCAAAGTATGAACTTTAC
GTATTCAGCGGAATCTTAGGTGCCAATGGCCTTTTATTCTCGATTATCGGCCTGTTGTAACTGCT
ACAACTGGCTCTCGCAATATTGACGCAATGAGAACTCGATTTGTTGGAGGCTAAAGAGGAGTCTG
AAACACTCAAGACACTGTCTTTTCTGCTGCTACAGACCGTTACCACTGGAGTATTTATTCTTCAT
GCGTTACTCCTCGCTTAAGCACTCTCTGACTTTAGATTCGCTTAAATCTCGTACGTAGGCAAGAG
AAGTTTTTAAAAAGTCATAGAATAAACAATAACCAAAGGTAGAAAAGACTCGCAATTAAGCGAAG
CTTTTCCACGTCTATGTACCACCCAATCAACACCCTATTTCCCCCTAGTCTCCTACTTGAGTTAT
TTCTTTATAATTAAATCACTATCTCTGGCCATGGAAGCTTAATTT
Found at i:90415 original size:12 final size:12
Alignment explanation
Indices: 90398--90509 Score: 89
Period size: 12 Copynumber: 10.1 Consensus size: 12
90388 TCACAACCTT
90398 GGCACCACCACG
1 GGCACCACCACG
* *
90410 GGCACCGCCTC-
1 GGCACCACCACG
*
90421 TG--CCACCACG
1 GGCACCACCACG
*
90431 GGCACCGCCAC-
1 GGCACCACCACG
*
90442 GG--CCGCCACG
1 GGCACCACCACG
*
90452 GGCACCACCGCG
1 GGCACCACCACG
* *
90464 AGCACCACCGCG
1 GGCACCACCACG
90476 GGCACCACCAC-
1 GGCACCACCACG
90487 GG--CCACCACG
1 GGCACCACCACG
90497 GGCACCACCACG
1 GGCACCACCACG
90509 G
1 G
90510 CCGCCGCCGA
Statistics
Matches: 79, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
9 19 0.24
10 5 0.06
11 5 0.06
12 50 0.63
ACGTcount: A:0.20, C:0.51, G:0.28, T:0.02
Consensus pattern (12 bp):
GGCACCACCACG
Left flanking sequence: Indices 89898 -- 90397
ATACGAGCCTGGTCGGGCTGGGCAACATCAGCGAACACGGCGTCAACCATACCCACCAACATACG
GTACTTCTGGGGGTGACGGGCATCGTCAACGATGGGAATCACGTTGGGACGCTTCTTGGCCATGC
CAATCAACTCACGGCCAGGACGGTGCGAGAACTCGACGGCGTAGACGTGACCCTCGGGGCCAACA
ACGTCGGAAACGTGCGACACGGAGGTACCAGAAGCAGCACCCAAGTAAAGCACAGCGGCACCGGG
CTTGATGCCCAACTCGTCAATACCACCCATGATACCGGCAGCCAACTTCGATCTGAAGGGGTTCC
ACACACGGTACTCAACCTTGGTGGCGGGCTCATCGCCCTCACCGGCCTCCTCGACGGTGATACGC
TTCTCACCGTACACGGACTCACCGGGGGCCATGTTCTTGGTCACCAACAAATCCTCCTTACCACG
GGCAATGAAGACACCAGCGTGTCTGTGGGGCTCAATCACAACCTT
Right flanking sequence: Indices 90510 -- 91009
CCGCCGCCGAAGCCACCACGGGCACCGCCACGGCCACCACGGGCGCCACCAAAGCCACCACGGCC
ACCACCACGGCCGCCTCTCGAAGAACCTCTGTCAAATGCCATCTTATCTAGTTCTTTTTGTTTGT
GTAAAACGTATTTTTGAGGTGAGATGAGCAAGAATTTTTCAGTCTGCGATGCTCGCGATGCGACC
GCACCTGCACAGGATCGGTGCGTGATTAAGCAGGAGAAACAAGGGATAAGAGATGGCGGTGGAGG
TGGGCAGGAGAAGGAGGATTTTGATGTGTGATTGGGTGGTTTGCAACTGGGGTGTTCAAATGGAA
AGTAAAAATGGTTTGAAAACGAATTTGTTATAGGGGTTAGGGGATATGAGGGTTGACACGGGTGG
GGGGAATGAGAACAATGGCTGGTGTAGTGTTCGCTGGCTTTGTCTTGGTGTGGTAACTTGAGCAG
ACCTTGACGCGGCCCAACGATCTCATGGTCTGGTGTTACAACGTT
Found at i:90428 original size:21 final size:21
Alignment explanation
Indices: 90402--90511 Score: 130
Period size: 21 Copynumber: 5.1 Consensus size: 21
90392 AACCTTGGCA
* * *
90402 CCACCACGGGCACCGCCTCTG
1 CCACCACGGGCACCACCACGG
*
90423 CCACCACGGGCACCGCCACGG
1 CCACCACGGGCACCACCACGG
* *
90444 CCGCCACGGGCACCACCGCGAG
1 CCACCACGGGCACCACCACG-G
*
90466 CACCACCGCGGGCACCACCACGG
1 --CCACCACGGGCACCACCACGG
90489 CCACCACGGGCACCACCACGG
1 CCACCACGGGCACCACCACGG
90510 CC
1 CC
90512 GCCGCCGAAG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
21 58 0.75
22 1 0.01
23 1 0.01
24 17 0.22
ACGTcount: A:0.19, C:0.53, G:0.26, T:0.02
Consensus pattern (21 bp):
CCACCACGGGCACCACCACGG
Left flanking sequence: Indices 89902 -- 90401
GAGCCTGGTCGGGCTGGGCAACATCAGCGAACACGGCGTCAACCATACCCACCAACATACGGTAC
TTCTGGGGGTGACGGGCATCGTCAACGATGGGAATCACGTTGGGACGCTTCTTGGCCATGCCAAT
CAACTCACGGCCAGGACGGTGCGAGAACTCGACGGCGTAGACGTGACCCTCGGGGCCAACAACGT
CGGAAACGTGCGACACGGAGGTACCAGAAGCAGCACCCAAGTAAAGCACAGCGGCACCGGGCTTG
ATGCCCAACTCGTCAATACCACCCATGATACCGGCAGCCAACTTCGATCTGAAGGGGTTCCACAC
ACGGTACTCAACCTTGGTGGCGGGCTCATCGCCCTCACCGGCCTCCTCGACGGTGATACGCTTCT
CACCGTACACGGACTCACCGGGGGCCATGTTCTTGGTCACCAACAAATCCTCCTTACCACGGGCA
ATGAAGACACCAGCGTGTCTGTGGGGCTCAATCACAACCTTGGCA
Right flanking sequence: Indices 90512 -- 91011
GCCGCCGAAGCCACCACGGGCACCGCCACGGCCACCACGGGCGCCACCAAAGCCACCACGGCCAC
CACCACGGCCGCCTCTCGAAGAACCTCTGTCAAATGCCATCTTATCTAGTTCTTTTTGTTTGTGT
AAAACGTATTTTTGAGGTGAGATGAGCAAGAATTTTTCAGTCTGCGATGCTCGCGATGCGACCGC
ACCTGCACAGGATCGGTGCGTGATTAAGCAGGAGAAACAAGGGATAAGAGATGGCGGTGGAGGTG
GGCAGGAGAAGGAGGATTTTGATGTGTGATTGGGTGGTTTGCAACTGGGGTGTTCAAATGGAAAG
TAAAAATGGTTTGAAAACGAATTTGTTATAGGGGTTAGGGGATATGAGGGTTGACACGGGTGGGG
GGAATGAGAACAATGGCTGGTGTAGTGTTCGCTGGCTTTGTCTTGGTGTGGTAACTTGAGCAGAC
CTTGACGCGGCCCAACGATCTCATGGTCTGGTGTTACAACGTTGG
Found at i:90435 original size:33 final size:33
Alignment explanation
Indices: 90398--90547 Score: 137
Period size: 33 Copynumber: 4.5 Consensus size: 33
90388 TCACAACCTT
* *
90398 GGCACCACCACGGGCACCGCCTCTGCCACCACG
1 GGCACCACCACGGGCACCGCCACGGCCACCACG
* *
90431 GGCACCGCCAC-GG--CCGCCACGGGCACCACCG
1 GGCACCACCACGGGCACCGCCACGGCCACCA-CG
* *
90462 CGAGCACCACCGCGGGCACCACCACGGCCACCACG
1 -G-GCACCACCACGGGCACCGCCACGGCCACCACG
* * *
90497 GGCACCACCACGGCCGCCGCCGA-AGCCACCACG
1 GGCACCACCACGGGCACCGCC-ACGGCCACCACG
* *
90530 GGCACCGCCACGGCCACC
1 GGCACCACCACGGGCACC
90548 ACGGGCGCCA
Statistics
Matches: 95, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
30 12 0.13
31 2 0.02
32 3 0.03
33 59 0.62
34 4 0.04
35 2 0.02
36 13 0.14
ACGTcount: A:0.19, C:0.52, G:0.27, T:0.01
Consensus pattern (33 bp):
GGCACCACCACGGGCACCGCCACGGCCACCACG
Left flanking sequence: Indices 89898 -- 90397
ATACGAGCCTGGTCGGGCTGGGCAACATCAGCGAACACGGCGTCAACCATACCCACCAACATACG
GTACTTCTGGGGGTGACGGGCATCGTCAACGATGGGAATCACGTTGGGACGCTTCTTGGCCATGC
CAATCAACTCACGGCCAGGACGGTGCGAGAACTCGACGGCGTAGACGTGACCCTCGGGGCCAACA
ACGTCGGAAACGTGCGACACGGAGGTACCAGAAGCAGCACCCAAGTAAAGCACAGCGGCACCGGG
CTTGATGCCCAACTCGTCAATACCACCCATGATACCGGCAGCCAACTTCGATCTGAAGGGGTTCC
ACACACGGTACTCAACCTTGGTGGCGGGCTCATCGCCCTCACCGGCCTCCTCGACGGTGATACGC
TTCTCACCGTACACGGACTCACCGGGGGCCATGTTCTTGGTCACCAACAAATCCTCCTTACCACG
GGCAATGAAGACACCAGCGTGTCTGTGGGGCTCAATCACAACCTT
Right flanking sequence: Indices 90548 -- 91047
ACGGGCGCCACCAAAGCCACCACGGCCACCACCACGGCCGCCTCTCGAAGAACCTCTGTCAAATG
CCATCTTATCTAGTTCTTTTTGTTTGTGTAAAACGTATTTTTGAGGTGAGATGAGCAAGAATTTT
TCAGTCTGCGATGCTCGCGATGCGACCGCACCTGCACAGGATCGGTGCGTGATTAAGCAGGAGAA
ACAAGGGATAAGAGATGGCGGTGGAGGTGGGCAGGAGAAGGAGGATTTTGATGTGTGATTGGGTG
GTTTGCAACTGGGGTGTTCAAATGGAAAGTAAAAATGGTTTGAAAACGAATTTGTTATAGGGGTT
AGGGGATATGAGGGTTGACACGGGTGGGGGGAATGAGAACAATGGCTGGTGTAGTGTTCGCTGGC
TTTGTCTTGGTGTGGTAACTTGAGCAGACCTTGACGCGGCCCAACGATCTCATGGTCTGGTGTTA
CAACGTTGGTTTTGTGCCCAAATTTTGCCCGCGACACAGCAGCTT
Found at i:90579 original size:21 final size:21
Alignment explanation
Indices: 90501--90581 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 21
90491 ACCACGGGCA
* * *
90501 CCACCACGGCCGCCGCCGAAG
1 CCACCACGGCCACCACCAAAG
* * **
90522 CCACCACGGGCACCGCCACGG
1 CCACCACGGCCACCACCAAAG
* *
90543 CCACCACGGGCGCCACCAAAG
1 CCACCACGGCCACCACCAAAG
90564 CCACCACGGCCACCACCA
1 CCACCACGGCCACCACCA
90582 CGGCCGCCTC
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.23, C:0.53, G:0.23, T:0.00
Consensus pattern (21 bp):
CCACCACGGCCACCACCAAAG
Left flanking sequence: Indices 90001 -- 90500
TCACGTTGGGACGCTTCTTGGCCATGCCAATCAACTCACGGCCAGGACGGTGCGAGAACTCGACG
GCGTAGACGTGACCCTCGGGGCCAACAACGTCGGAAACGTGCGACACGGAGGTACCAGAAGCAGC
ACCCAAGTAAAGCACAGCGGCACCGGGCTTGATGCCCAACTCGTCAATACCACCCATGATACCGG
CAGCCAACTTCGATCTGAAGGGGTTCCACACACGGTACTCAACCTTGGTGGCGGGCTCATCGCCC
TCACCGGCCTCCTCGACGGTGATACGCTTCTCACCGTACACGGACTCACCGGGGGCCATGTTCTT
GGTCACCAACAAATCCTCCTTACCACGGGCAATGAAGACACCAGCGTGTCTGTGGGGCTCAATCA
CAACCTTGGCACCACCACGGGCACCGCCTCTGCCACCACGGGCACCGCCACGGCCGCCACGGGCA
CCACCGCGAGCACCACCGCGGGCACCACCACGGCCACCACGGGCA
Right flanking sequence: Indices 90582 -- 91081
CGGCCGCCTCTCGAAGAACCTCTGTCAAATGCCATCTTATCTAGTTCTTTTTGTTTGTGTAAAAC
GTATTTTTGAGGTGAGATGAGCAAGAATTTTTCAGTCTGCGATGCTCGCGATGCGACCGCACCTG
CACAGGATCGGTGCGTGATTAAGCAGGAGAAACAAGGGATAAGAGATGGCGGTGGAGGTGGGCAG
GAGAAGGAGGATTTTGATGTGTGATTGGGTGGTTTGCAACTGGGGTGTTCAAATGGAAAGTAAAA
ATGGTTTGAAAACGAATTTGTTATAGGGGTTAGGGGATATGAGGGTTGACACGGGTGGGGGGAAT
GAGAACAATGGCTGGTGTAGTGTTCGCTGGCTTTGTCTTGGTGTGGTAACTTGAGCAGACCTTGA
CGCGGCCCAACGATCTCATGGTCTGGTGTTACAACGTTGGTTTTGTGCCCAAATTTTGCCCGCGA
CACAGCAGCTTACCGCCGTCGGTCGTGTGGTGGTGACATTCGTGT
Found at i:90583 original size:42 final size:42
Alignment explanation
Indices: 90480--90586 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
90470 ACCGCGGGCA
* * *
90480 CCACCACGGCCACCA-C-GGGCACCACCACGGCCGCCGCCGAAG
1 CCACCACGGCCACCACCACGG--CCACCACGGCCGCCACCAAAG
* * *
90522 CCACCACGGGCACCGCCACGGCCACCACGGGCGCCACCAAAG
1 CCACCACGGCCACCACCACGGCCACCACGGCCGCCACCAAAG
90564 CCACCACGGCCACCACCACGGCC
1 CCACCACGGCCACCACCACGGCC
90587 GCCTCTCGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 52 0.95
43 1 0.02
44 2 0.04
ACGTcount: A:0.22, C:0.53, G:0.24, T:0.00
Consensus pattern (42 bp):
CCACCACGGCCACCACCACGGCCACCACGGCCGCCACCAAAG
Left flanking sequence: Indices 89980 -- 90479
GGGCATCGTCAACGATGGGAATCACGTTGGGACGCTTCTTGGCCATGCCAATCAACTCACGGCCA
GGACGGTGCGAGAACTCGACGGCGTAGACGTGACCCTCGGGGCCAACAACGTCGGAAACGTGCGA
CACGGAGGTACCAGAAGCAGCACCCAAGTAAAGCACAGCGGCACCGGGCTTGATGCCCAACTCGT
CAATACCACCCATGATACCGGCAGCCAACTTCGATCTGAAGGGGTTCCACACACGGTACTCAACC
TTGGTGGCGGGCTCATCGCCCTCACCGGCCTCCTCGACGGTGATACGCTTCTCACCGTACACGGA
CTCACCGGGGGCCATGTTCTTGGTCACCAACAAATCCTCCTTACCACGGGCAATGAAGACACCAG
CGTGTCTGTGGGGCTCAATCACAACCTTGGCACCACCACGGGCACCGCCTCTGCCACCACGGGCA
CCGCCACGGCCGCCACGGGCACCACCGCGAGCACCACCGCGGGCA
Right flanking sequence: Indices 90587 -- 91086
GCCTCTCGAAGAACCTCTGTCAAATGCCATCTTATCTAGTTCTTTTTGTTTGTGTAAAACGTATT
TTTGAGGTGAGATGAGCAAGAATTTTTCAGTCTGCGATGCTCGCGATGCGACCGCACCTGCACAG
GATCGGTGCGTGATTAAGCAGGAGAAACAAGGGATAAGAGATGGCGGTGGAGGTGGGCAGGAGAA
GGAGGATTTTGATGTGTGATTGGGTGGTTTGCAACTGGGGTGTTCAAATGGAAAGTAAAAATGGT
TTGAAAACGAATTTGTTATAGGGGTTAGGGGATATGAGGGTTGACACGGGTGGGGGGAATGAGAA
CAATGGCTGGTGTAGTGTTCGCTGGCTTTGTCTTGGTGTGGTAACTTGAGCAGACCTTGACGCGG
CCCAACGATCTCATGGTCTGGTGTTACAACGTTGGTTTTGTGCCCAAATTTTGCCCGCGACACAG
CAGCTTACCGCCGTCGGTCGTGTGGTGGTGACATTCGTGTGTAGT
Found at i:94959 original size:21 final size:20
Alignment explanation
Indices: 94918--94979 Score: 83
Period size: 21 Copynumber: 3.1 Consensus size: 20
94908 GCTCACGCTG
94918 CTGGCGCTGTTGGC--GGGC
1 CTGGCGCTGTTGGCTGGGGC
94936 CTGGCGCTGTTGGCTGGTGGC
1 CTGGCGCTGTTGGCTGG-GGC
*
94957 CTGGCTCTGTTGGCTGGCGGC
1 CTGGCGCTGTTGGCTGG-GGC
94978 CT
1 CT
94980 TTCCCAGTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
18 14 0.36
20 1 0.03
21 24 0.62
ACGTcount: A:0.00, C:0.27, G:0.45, T:0.27
Consensus pattern (20 bp):
CTGGCGCTGTTGGCTGGGGC
Left flanking sequence: Indices 94418 -- 94917
ACAAGTCCCCCACGGGCCCGGCACCCATCTACCACCTCGAGCTCCATTCGAAAGCAGCACTGGCT
CCCGAGCTGTTGCCCGTAGACAAATTGTCCATTGATACCCTGGCGCCCGCCCAGTCCACGGCACC
AGAGTCGACGTCGTCGTCCCAGAGCCTTGTCCCGCCCGCCCAGCTCATGTGGCACTACATCGACC
ACAACAAACAGGAACAGGGACCGTTCCTGGGCGAGATGATGGCCGAGTGGTGGGCTGGGGGCTTT
CTCTCGTTGGACCTCAACATCCGCCGGCCCGAGGAATCCAAGTTCCAGACGATCCGCGACCTATG
TGCCCAGACACAAAACTACGCGGCTCCGTTCACGGTGGCGCTCCCTCCGGTGCTGCCTCCGCCGG
CAGCGCTGCCCCAGGTGGCGGCGCTGCCAGGGGTGCTAAAAAACCCGTTGTTGCGCGGGTTGTAC
GACCCGTTTGCGCCCGGTTCCCCGATCAACTCGCCGCTCACGCTG
Right flanking sequence: Indices 94980 -- 95479
TTCCCAGTTCCACTTGGCCGGGTCGCTGGCGCTCAACTCGCCCGGGCTAGGAGCCCTGCCCTCGT
TGGCTGGGCTCTCCACGGGGGGGCTAGCCTCGGGCAATGGGTTGGGGGCGCCAGCGTACGGCTAC
CAGCAGCCGCTCGTGAATCCCCAGCCGTTTACGCCGTTGGCGTCCACTCCTGGAGCCGCAGCGCC
CGGGTTCTTGCTGCGGACGAGCTCGCTGTGGCTTGATTTCAGCAACCCTCTGCCCTGGGGCCAGG
TGCTGAATGGCAGTGCGCTGCGGGTGAACCTGCCGTTCATGAACGGCGAGGAAGCGCCCGCCTCG
GACTTGTTGACCGACAACTTTGGGGTGTCGCTGGTGTTGGACGACCCGGGCTGTTTTGACTCGGC
CAGCCACGCCAGCCAGGCCCAGGCCCTTCACGCGCTGCTCCAGCAGCAGTCGCTCAGCCGGACCA
CGAGTCGCCAGAGCACCCAGGCCCAGCAGATGTTGAACCAGTTGC
Found at i:95565 original size:9 final size:9
Alignment explanation
Indices: 95533--95591 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
95523 GGCGCAAGAC
*
95533 CAGGCCCAG
1 CAGGCTCAG
*
95542 CAGGCCCAG
1 CAGGCTCAG
95551 CAGGCTCAG
1 CAGGCTCAG
*
95560 CAGGCTCAA
1 CAGGCTCAG
*
95569 CAAGCTCACCAG
1 CAGGCT---CAG
95581 CAGGCTCAG
1 CAGGCTCAG
95590 CA
1 CA
95592 ACAGGCTCAG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
9 35 0.83
12 7 0.17
ACGTcount: A:0.27, C:0.39, G:0.27, T:0.07
Consensus pattern (9 bp):
CAGGCTCAG
Left flanking sequence: Indices 95033 -- 95532
CCCTGCCCTCGTTGGCTGGGCTCTCCACGGGGGGGCTAGCCTCGGGCAATGGGTTGGGGGCGCCA
GCGTACGGCTACCAGCAGCCGCTCGTGAATCCCCAGCCGTTTACGCCGTTGGCGTCCACTCCTGG
AGCCGCAGCGCCCGGGTTCTTGCTGCGGACGAGCTCGCTGTGGCTTGATTTCAGCAACCCTCTGC
CCTGGGGCCAGGTGCTGAATGGCAGTGCGCTGCGGGTGAACCTGCCGTTCATGAACGGCGAGGAA
GCGCCCGCCTCGGACTTGTTGACCGACAACTTTGGGGTGTCGCTGGTGTTGGACGACCCGGGCTG
TTTTGACTCGGCCAGCCACGCCAGCCAGGCCCAGGCCCTTCACGCGCTGCTCCAGCAGCAGTCGC
TCAGCCGGACCACGAGTCGCCAGAGCACCCAGGCCCAGCAGATGTTGAACCAGTTGCAGGAGCCG
AGAGAAGCGAAACTGCAGCTGCAGCTGCCTCAGCAGGCGCAAGAC
Right flanking sequence: Indices 95592 -- 96091
ACAGGCTCAGCAGCAGACCCACCAACAAGCTCAGGAGCACCAGCAACAGCAGGCCCAGCAGCAGC
AGGCCCAGCAACAGCACCCTCAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGGCCCAGTATGCT
CACCAACAGGCCCAACAGCAAGCTCACCAGCAACCCGAGTTGGCGCAGCCCCTGCTGGGCAAGTC
TACCCCCCAGCTCAAGAAGAAGACCCCTCTGGTGAACCAGCAGAAGAAGCTTCAGCAGCAGCAGG
CGCTTTTGCAAGCGCAGCTCGAAGCCCAGCGGGCAGAGCAAGCCGCTGCCGAGGACGAAGCCTCG
AGACAGCGCGAGACCGAGCACGTGGCTGAGAGCCAGGAGGAGCCCCAGCCCGAGGTGTGTCCCTG
GCTGGTTCCCGCGGCCGAAAAGAAGCCCGCGATGTCTCTCAAGGAGATCCAGGCCCTCGAGGCCG
AGAGACTTCTCAAGCAGAAGCAAATGGAGCAACAGCTGCGCGCCG
Found at i:95602 original size:21 final size:22
Alignment explanation
Indices: 95549--95604 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
95539 CAGCAGGCCC
95549 AGCAGGCTCAGCAGGCTCAACA
1 AGCAGGCTCAGCAGGCTCAACA
*** *
95571 AGCTCAC-CAGCAGGCTCAGCA
1 AGCAGGCTCAGCAGGCTCAACA
95592 A-CAGGCTCAGCAG
1 AGCAGGCTCAGCAG
95605 CAGACCCACC
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
20 2 0.08
21 20 0.77
22 4 0.15
ACGTcount: A:0.30, C:0.34, G:0.27, T:0.09
Consensus pattern (22 bp):
AGCAGGCTCAGCAGGCTCAACA
Left flanking sequence: Indices 95049 -- 95548
TGGGCTCTCCACGGGGGGGCTAGCCTCGGGCAATGGGTTGGGGGCGCCAGCGTACGGCTACCAGC
AGCCGCTCGTGAATCCCCAGCCGTTTACGCCGTTGGCGTCCACTCCTGGAGCCGCAGCGCCCGGG
TTCTTGCTGCGGACGAGCTCGCTGTGGCTTGATTTCAGCAACCCTCTGCCCTGGGGCCAGGTGCT
GAATGGCAGTGCGCTGCGGGTGAACCTGCCGTTCATGAACGGCGAGGAAGCGCCCGCCTCGGACT
TGTTGACCGACAACTTTGGGGTGTCGCTGGTGTTGGACGACCCGGGCTGTTTTGACTCGGCCAGC
CACGCCAGCCAGGCCCAGGCCCTTCACGCGCTGCTCCAGCAGCAGTCGCTCAGCCGGACCACGAG
TCGCCAGAGCACCCAGGCCCAGCAGATGTTGAACCAGTTGCAGGAGCCGAGAGAAGCGAAACTGC
AGCTGCAGCTGCCTCAGCAGGCGCAAGACCAGGCCCAGCAGGCCC
Right flanking sequence: Indices 95605 -- 96104
CAGACCCACCAACAAGCTCAGGAGCACCAGCAACAGCAGGCCCAGCAGCAGCAGGCCCAGCAACA
GCACCCTCAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGGCCCAGTATGCTCACCAACAGGCCC
AACAGCAAGCTCACCAGCAACCCGAGTTGGCGCAGCCCCTGCTGGGCAAGTCTACCCCCCAGCTC
AAGAAGAAGACCCCTCTGGTGAACCAGCAGAAGAAGCTTCAGCAGCAGCAGGCGCTTTTGCAAGC
GCAGCTCGAAGCCCAGCGGGCAGAGCAAGCCGCTGCCGAGGACGAAGCCTCGAGACAGCGCGAGA
CCGAGCACGTGGCTGAGAGCCAGGAGGAGCCCCAGCCCGAGGTGTGTCCCTGGCTGGTTCCCGCG
GCCGAAAAGAAGCCCGCGATGTCTCTCAAGGAGATCCAGGCCCTCGAGGCCGAGAGACTTCTCAA
GCAGAAGCAAATGGAGCAACAGCTGCGCGCCGCTGAGGCCCAGCG
Found at i:95617 original size:24 final size:24
Alignment explanation
Indices: 95566--95630 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
95556 TCAGCAGGCT
* * * *
95566 CAACAAGCTCACCAGCAGGCTCAG
1 CAACAAGCTCAGCAGCAGACCCAC
*
95590 CAACAGGCTCAGCAGCAGACCCAC
1 CAACAAGCTCAGCAGCAGACCCAC
*
95614 CAACAAGCTCAGGAGCA
1 CAACAAGCTCAGCAGCA
95631 CCAGCAACAG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.22, T:0.06
Consensus pattern (24 bp):
CAACAAGCTCAGCAGCAGACCCAC
Left flanking sequence: Indices 95066 -- 95565
GGCTAGCCTCGGGCAATGGGTTGGGGGCGCCAGCGTACGGCTACCAGCAGCCGCTCGTGAATCCC
CAGCCGTTTACGCCGTTGGCGTCCACTCCTGGAGCCGCAGCGCCCGGGTTCTTGCTGCGGACGAG
CTCGCTGTGGCTTGATTTCAGCAACCCTCTGCCCTGGGGCCAGGTGCTGAATGGCAGTGCGCTGC
GGGTGAACCTGCCGTTCATGAACGGCGAGGAAGCGCCCGCCTCGGACTTGTTGACCGACAACTTT
GGGGTGTCGCTGGTGTTGGACGACCCGGGCTGTTTTGACTCGGCCAGCCACGCCAGCCAGGCCCA
GGCCCTTCACGCGCTGCTCCAGCAGCAGTCGCTCAGCCGGACCACGAGTCGCCAGAGCACCCAGG
CCCAGCAGATGTTGAACCAGTTGCAGGAGCCGAGAGAAGCGAAACTGCAGCTGCAGCTGCCTCAG
CAGGCGCAAGACCAGGCCCAGCAGGCCCAGCAGGCTCAGCAGGCT
Right flanking sequence: Indices 95631 -- 96130
CCAGCAACAGCAGGCCCAGCAGCAGCAGGCCCAGCAACAGCACCCTCAGGCTCAGGCTCAGGCTC
AGGCCCAGGCTCAGGCCCAGTATGCTCACCAACAGGCCCAACAGCAAGCTCACCAGCAACCCGAG
TTGGCGCAGCCCCTGCTGGGCAAGTCTACCCCCCAGCTCAAGAAGAAGACCCCTCTGGTGAACCA
GCAGAAGAAGCTTCAGCAGCAGCAGGCGCTTTTGCAAGCGCAGCTCGAAGCCCAGCGGGCAGAGC
AAGCCGCTGCCGAGGACGAAGCCTCGAGACAGCGCGAGACCGAGCACGTGGCTGAGAGCCAGGAG
GAGCCCCAGCCCGAGGTGTGTCCCTGGCTGGTTCCCGCGGCCGAAAAGAAGCCCGCGATGTCTCT
CAAGGAGATCCAGGCCCTCGAGGCCGAGAGACTTCTCAAGCAGAAGCAAATGGAGCAACAGCTGC
GCGCCGCTGAGGCCCAGCGGGCGTGGGCCCAGGCGGAAGCCGAGT
Found at i:95651 original size:15 final size:15
Alignment explanation
Indices: 95631--95672 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
95621 CTCAGGAGCA
95631 CCAGCAACAGCAGGC
1 CCAGCAACAGCAGGC
*
95646 CCAGCAGCAGCAGGC
1 CCAGCAACAGCAGGC
95661 CCAGCAACAGCA
1 CCAGCAACAGCA
95673 CCCTCAGGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.40, G:0.26, T:0.00
Consensus pattern (15 bp):
CCAGCAACAGCAGGC
Left flanking sequence: Indices 95131 -- 95630
CAGCCGTTTACGCCGTTGGCGTCCACTCCTGGAGCCGCAGCGCCCGGGTTCTTGCTGCGGACGAG
CTCGCTGTGGCTTGATTTCAGCAACCCTCTGCCCTGGGGCCAGGTGCTGAATGGCAGTGCGCTGC
GGGTGAACCTGCCGTTCATGAACGGCGAGGAAGCGCCCGCCTCGGACTTGTTGACCGACAACTTT
GGGGTGTCGCTGGTGTTGGACGACCCGGGCTGTTTTGACTCGGCCAGCCACGCCAGCCAGGCCCA
GGCCCTTCACGCGCTGCTCCAGCAGCAGTCGCTCAGCCGGACCACGAGTCGCCAGAGCACCCAGG
CCCAGCAGATGTTGAACCAGTTGCAGGAGCCGAGAGAAGCGAAACTGCAGCTGCAGCTGCCTCAG
CAGGCGCAAGACCAGGCCCAGCAGGCCCAGCAGGCTCAGCAGGCTCAACAAGCTCACCAGCAGGC
TCAGCAACAGGCTCAGCAGCAGACCCACCAACAAGCTCAGGAGCA
Right flanking sequence: Indices 95673 -- 96172
CCCTCAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGGCCCAGTATGCTCACCAACAGGCCCAAC
AGCAAGCTCACCAGCAACCCGAGTTGGCGCAGCCCCTGCTGGGCAAGTCTACCCCCCAGCTCAAG
AAGAAGACCCCTCTGGTGAACCAGCAGAAGAAGCTTCAGCAGCAGCAGGCGCTTTTGCAAGCGCA
GCTCGAAGCCCAGCGGGCAGAGCAAGCCGCTGCCGAGGACGAAGCCTCGAGACAGCGCGAGACCG
AGCACGTGGCTGAGAGCCAGGAGGAGCCCCAGCCCGAGGTGTGTCCCTGGCTGGTTCCCGCGGCC
GAAAAGAAGCCCGCGATGTCTCTCAAGGAGATCCAGGCCCTCGAGGCCGAGAGACTTCTCAAGCA
GAAGCAAATGGAGCAACAGCTGCGCGCCGCTGAGGCCCAGCGGGCGTGGGCCCAGGCGGAAGCCG
AGTCTCGCGAATCGTCGAAGAAGATCGATTTCGCTGCCAAGGGCG
Found at i:95684 original size:6 final size:6
Alignment explanation
Indices: 95675--95711 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
95665 CAACAGCACC
*
95675 CTCAGG CTCAGG CTCAGG CTCAGG CCCAGG CTCAGG C
1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG C
95712 CCAGTATGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.38, G:0.32, T:0.14
Consensus pattern (6 bp):
CTCAGG
Left flanking sequence: Indices 95175 -- 95674
CGGGTTCTTGCTGCGGACGAGCTCGCTGTGGCTTGATTTCAGCAACCCTCTGCCCTGGGGCCAGG
TGCTGAATGGCAGTGCGCTGCGGGTGAACCTGCCGTTCATGAACGGCGAGGAAGCGCCCGCCTCG
GACTTGTTGACCGACAACTTTGGGGTGTCGCTGGTGTTGGACGACCCGGGCTGTTTTGACTCGGC
CAGCCACGCCAGCCAGGCCCAGGCCCTTCACGCGCTGCTCCAGCAGCAGTCGCTCAGCCGGACCA
CGAGTCGCCAGAGCACCCAGGCCCAGCAGATGTTGAACCAGTTGCAGGAGCCGAGAGAAGCGAAA
CTGCAGCTGCAGCTGCCTCAGCAGGCGCAAGACCAGGCCCAGCAGGCCCAGCAGGCTCAGCAGGC
TCAACAAGCTCACCAGCAGGCTCAGCAACAGGCTCAGCAGCAGACCCACCAACAAGCTCAGGAGC
ACCAGCAACAGCAGGCCCAGCAGCAGCAGGCCCAGCAACAGCACC
Right flanking sequence: Indices 95712 -- 96211
CCAGTATGCTCACCAACAGGCCCAACAGCAAGCTCACCAGCAACCCGAGTTGGCGCAGCCCCTGC
TGGGCAAGTCTACCCCCCAGCTCAAGAAGAAGACCCCTCTGGTGAACCAGCAGAAGAAGCTTCAG
CAGCAGCAGGCGCTTTTGCAAGCGCAGCTCGAAGCCCAGCGGGCAGAGCAAGCCGCTGCCGAGGA
CGAAGCCTCGAGACAGCGCGAGACCGAGCACGTGGCTGAGAGCCAGGAGGAGCCCCAGCCCGAGG
TGTGTCCCTGGCTGGTTCCCGCGGCCGAAAAGAAGCCCGCGATGTCTCTCAAGGAGATCCAGGCC
CTCGAGGCCGAGAGACTTCTCAAGCAGAAGCAAATGGAGCAACAGCTGCGCGCCGCTGAGGCCCA
GCGGGCGTGGGCCCAGGCGGAAGCCGAGTCTCGCGAATCGTCGAAGAAGATCGATTTCGCTGCCA
AGGGCGGCTGGGGCTCTCCCGCGCCTACGTCTGCCGCTCCCGCCA
Found at i:95712 original size:12 final size:12
Alignment explanation
Indices: 95677--95715 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
95667 ACAGCACCCT
*
95677 CAGGCTCAGGCT
1 CAGGCTCAGGCC
95689 CAGGCTCAGGCC
1 CAGGCTCAGGCC
95701 CAGGCTCAGGCC
1 CAGGCTCAGGCC
95713 CAG
1 CAG
95716 TATGCTCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.18, C:0.38, G:0.33, T:0.10
Consensus pattern (12 bp):
CAGGCTCAGGCC
Left flanking sequence: Indices 95177 -- 95676
GGTTCTTGCTGCGGACGAGCTCGCTGTGGCTTGATTTCAGCAACCCTCTGCCCTGGGGCCAGGTG
CTGAATGGCAGTGCGCTGCGGGTGAACCTGCCGTTCATGAACGGCGAGGAAGCGCCCGCCTCGGA
CTTGTTGACCGACAACTTTGGGGTGTCGCTGGTGTTGGACGACCCGGGCTGTTTTGACTCGGCCA
GCCACGCCAGCCAGGCCCAGGCCCTTCACGCGCTGCTCCAGCAGCAGTCGCTCAGCCGGACCACG
AGTCGCCAGAGCACCCAGGCCCAGCAGATGTTGAACCAGTTGCAGGAGCCGAGAGAAGCGAAACT
GCAGCTGCAGCTGCCTCAGCAGGCGCAAGACCAGGCCCAGCAGGCCCAGCAGGCTCAGCAGGCTC
AACAAGCTCACCAGCAGGCTCAGCAACAGGCTCAGCAGCAGACCCACCAACAAGCTCAGGAGCAC
CAGCAACAGCAGGCCCAGCAGCAGCAGGCCCAGCAACAGCACCCT
Right flanking sequence: Indices 95716 -- 96215
TATGCTCACCAACAGGCCCAACAGCAAGCTCACCAGCAACCCGAGTTGGCGCAGCCCCTGCTGGG
CAAGTCTACCCCCCAGCTCAAGAAGAAGACCCCTCTGGTGAACCAGCAGAAGAAGCTTCAGCAGC
AGCAGGCGCTTTTGCAAGCGCAGCTCGAAGCCCAGCGGGCAGAGCAAGCCGCTGCCGAGGACGAA
GCCTCGAGACAGCGCGAGACCGAGCACGTGGCTGAGAGCCAGGAGGAGCCCCAGCCCGAGGTGTG
TCCCTGGCTGGTTCCCGCGGCCGAAAAGAAGCCCGCGATGTCTCTCAAGGAGATCCAGGCCCTCG
AGGCCGAGAGACTTCTCAAGCAGAAGCAAATGGAGCAACAGCTGCGCGCCGCTGAGGCCCAGCGG
GCGTGGGCCCAGGCGGAAGCCGAGTCTCGCGAATCGTCGAAGAAGATCGATTTCGCTGCCAAGGG
CGGCTGGGGCTCTCCCGCGCCTACGTCTGCCGCTCCCGCCAAGAC
Found at i:108237 original size:12 final size:12
Alignment explanation
Indices: 108195--108229 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
108185 GCCACCAAAG
108195 TCATCGTTGTCA
1 TCATCGTTGTCA
108207 TCATCGTTGTCA
1 TCATCGTTGTCA
108219 TCATCGTTGTC
1 TCATCGTTGTC
108230 GTCTTCGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.14, C:0.26, G:0.17, T:0.43
Consensus pattern (12 bp):
TCATCGTTGTCA
Left flanking sequence: Indices 107695 -- 108194
ACAGGTTGATGTCGTTGACAATGACCCCGACATTGGCCTCGGAGAGCTTGTTAAGCGGACCCTTG
ATATCCTTCCGGATGGCTTGTACCTCGGCAGACACACCAGCACCCGCTTCCGCCTCCATTTTGCG
TCTCAAGGCCGGGGGGATGTACTTGGAGCCAGCCAGAGGCTCGGCCAGCTCCTGGGCCGCAACAA
ACGGGTTCTCGTCCTCGGACTCCGAGCCCTCGCTGGCGTCGCTCTCCTCGCTGTCGCTAGGCTCG
TCAAAGGCGTCAGAGCCACCGTCAGAGCCAAAGCCAAAGTCAAGACCGTCGAGCAACCCACCGAT
GTCGTCGTCGTCGTCAATCTTTTTGAGACCGCCCTTGGCACTCTTCATCCCGAGCTTTTTGGCGT
AGTACTCGGCGTCCTTGTCGTCGCGCTCCATGAGCTCCCGCTCGCGGATAGACAACACACGGGGC
TCCTTCTTGGGCTTGGCGGGCTCGTCATCGCTGAAGCCACCAAAG
Right flanking sequence: Indices 108230 -- 108729
GTCTTCGTCATCTTCGTCTTCAATGCCAAAATCGTCGCTGAGGTCGTCGTCCTCTTCAAGGTCGT
CCTCTTTGACAACCCGAACCTCGGTTTTAGACTTTTTGCCCTTTTTGAGCGCAGCAAGCTTCGCC
ATAGTGTCCTCTTCATCGTCTTCATCGTCTTCATTGTCCTCTTCGTCCTCTTCGTCGTCAAAGTC
GTCCGAGAGACTGTCGTCCCCGAGATCGTCCTCCTTCACAACACGCACGTCGCTGGTGGACTTTT
TGCCCTTCTTGAGAGCAGCAAGCTTAGCCATGGGGTCCTCGTCGTCACTCTCGTCGTCGCCAAAG
TCGTCGTCCGACAAGCTGTCGTCGTCCAAATCGTCCTCCTTGACCACTCTCACCTCGGAGGAGGC
CTTTTTGCCCTTTTTGAGAGCCATAAGCCGGGCCATCGGGTCCTCTTCATCATCCTCGTCGTCCA
TCTCTTCGTCACTTAGAAGCTCGCCCTCGGAGAAACTGTCGTCCC
Found at i:108383 original size:9 final size:9
Alignment explanation
Indices: 108369--108393 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
108359 CATAGTGTCC
108369 TCTTCATCG
1 TCTTCATCG
108378 TCTTCATCG
1 TCTTCATCG
108387 TCTTCAT
1 TCTTCAT
108394 TGTCCTCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.32, G:0.08, T:0.48
Consensus pattern (9 bp):
TCTTCATCG
Left flanking sequence: Indices 107869 -- 108368
CCAGCTCCTGGGCCGCAACAAACGGGTTCTCGTCCTCGGACTCCGAGCCCTCGCTGGCGTCGCTC
TCCTCGCTGTCGCTAGGCTCGTCAAAGGCGTCAGAGCCACCGTCAGAGCCAAAGCCAAAGTCAAG
ACCGTCGAGCAACCCACCGATGTCGTCGTCGTCGTCAATCTTTTTGAGACCGCCCTTGGCACTCT
TCATCCCGAGCTTTTTGGCGTAGTACTCGGCGTCCTTGTCGTCGCGCTCCATGAGCTCCCGCTCG
CGGATAGACAACACACGGGGCTCCTTCTTGGGCTTGGCGGGCTCGTCATCGCTGAAGCCACCAAA
GTCATCGTTGTCATCATCGTTGTCATCATCGTTGTCGTCTTCGTCATCTTCGTCTTCAATGCCAA
AATCGTCGCTGAGGTCGTCGTCCTCTTCAAGGTCGTCCTCTTTGACAACCCGAACCTCGGTTTTA
GACTTTTTGCCCTTTTTGAGCGCAGCAAGCTTCGCCATAGTGTCC
Right flanking sequence: Indices 108394 -- 108893
TGTCCTCTTCGTCCTCTTCGTCGTCAAAGTCGTCCGAGAGACTGTCGTCCCCGAGATCGTCCTCC
TTCACAACACGCACGTCGCTGGTGGACTTTTTGCCCTTCTTGAGAGCAGCAAGCTTAGCCATGGG
GTCCTCGTCGTCACTCTCGTCGTCGCCAAAGTCGTCGTCCGACAAGCTGTCGTCGTCCAAATCGT
CCTCCTTGACCACTCTCACCTCGGAGGAGGCCTTTTTGCCCTTTTTGAGAGCCATAAGCCGGGCC
ATCGGGTCCTCTTCATCATCCTCGTCGTCCATCTCTTCGTCACTTAGAAGCTCGCCCTCGGAGAA
ACTGTCGTCCCCAAGGTCGTCCTCTTTGACCACTCTCACCTCTGAGCTTGACTTCTTGCCCTTCT
TAAGTGCCAGGAGAGCTGCCATCGTAGCTGCCTCATCGTCATCCTCCGCGGGCTCCTCCTCAGGC
TCCTCAGGCTCCTGCTCTTTGGGCTCCTCAGGCTTTGCCTTCTTC
Found at i:111209 original size:43 final size:43
Alignment explanation
Indices: 111148--111267 Score: 222
Period size: 43 Copynumber: 2.8 Consensus size: 43
111138 GTATGTTGAT
111148 CACCATACACTTGGAGAGACATTTGAGGCTGTCTCTATGGTAC
1 CACCATACACTTGGAGAGACATTTGAGGCTGTCTCTATGGTAC
111191 CACCATACACTTGGAGAGACATTTGAGGCTGTCTCTATGGTAC
1 CACCATACACTTGGAGAGACATTTGAGGCTGTCTCTATGGTAC
*
111234 CACCATACACTTGGAGAGACATCTGAGGCCTGTC
1 CACCATACACTTGGAGAGACATTTGAGG-CTGTC
111268 GCCGGTAACC
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
43 70 0.93
44 5 0.07
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (43 bp):
CACCATACACTTGGAGAGACATTTGAGGCTGTCTCTATGGTAC
Left flanking sequence: Indices 110648 -- 111147
CTAACCGGCGCCACGACATCGACGAGGCGTTTTTGCGGCGGTTGCCGAAGACGTTTGCTGTGAAG
CGGCCCGATGCCCAGCAGCGGCGGGCGATCTTGCTGAAGATCTTGAAGGACGCGACGTTGGACCC
CGTGGAGTTTGACTTGAACTACGTGGTTGCCCACACCGAAGGGAAGCTGGGCCTGGACCTCCGCG
AGTTGTGTCGCGAGGCGGCGATTTTGCCCGTGCGCGAGTATATCCGCGAGAACTACGACTACAAG
CTGGGAGCGCTTGCCGGAGACGACGGCGACGACTTCCCCGTGCGTCCCTTGCGCACCCTGGACTT
CATCAAGGAGATTCCGGCGATGGGGTTGGACTGATTGGACTGATAGACTGTATATAAGGCACGGC
CGTATTTATTGGGAACGAGGAAAGGAATGAGGTAGGGTGATGGTGGTGTGGCTGGTGTGACCAGA
GGGAATGTCTTCTTATGACTACCGGGCCATGGTTCGTATGTTGAT
Right flanking sequence: Indices 111268 -- 111767
GCCGGTAACCCACCCAAGTCCTACCAGGACTGCACCATGATTCTTGAGTTGACTATCGGACCTAC
CAGATTGCAGACTCTGAAACTTGTTCAGTCATCACCCCATCACCTAGCTTAACACGCCCTACATA
CCACGACGATCCTCGCGTATCGCTCTAAACCTTAATTCACTTTGTAACAACCATAGTCCTACACT
CATCCTTACAGTTCAATATTATATTCATGCTACTCAGCGGGTCACTGATTGCTAATGTACAGCTC
CGTCTCTATCACGTTTATTTACTTCCCACCGGCCTGGGCCTGGACTTGGGAGTAATAGTTGAGGA
TCTGCTCGCAGGTGCCAAAGTCGGTGACGTCGCCCCAGTGGACCACAAAGTCGCCGTCGTGGTAA
TGTAACTTGGGGTCCGCAGCCCCCACCACGTGCTTGCCCAGGATGGTGCGGGCAGGCACGATCGC
CAGCTTCAGCAACGTGAAGGGGTGCCACTGCAAGATGTGGGTCAA
Found at i:112975 original size:11 final size:11
Alignment explanation
Indices: 112961--112988 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
112951 CTTATTATGT
112961 TCTCTTTCTGC
1 TCTCTTTCTGC
112972 TCTCTTTCTGC
1 TCTCTTTCTGC
112983 TCTCTT
1 TCTCTT
112989 ATCTCTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.36, G:0.07, T:0.57
Consensus pattern (11 bp):
TCTCTTTCTGC
Left flanking sequence: Indices 112461 -- 112960
GAGCGACAAGATCACCGTGCGCTCGAACTCGGGCATGTCCAGATCGCGCACTTTGGCCAGGATCA
CGAGGTTGGCGGCTCCAAGCTCGCGGAGCAACGCCGCGTCCTCGACCGGAGGGTAGATATACGGG
CTTTTGGTGGCAATGTCGTTACCCTTCAGGGTCAACGAGTGCGGTGGAGGCAACACCTTGTGGTA
GTGGGGACGGAAGTGTGCAAGCACATGCCCCACGACATTGAAGTACCATATGAGCACCGCCACCC
CTAGAAGGTACGGAACCTTGCTTTTGAGCCCGCCTCGGCCGCGGGGCTTGAACGTTGGCATGGGT
GGATCTGGTAGGTGATGCTCGCGAAAAAGTTAAAAAATCCAACACGCGACGCAGGGTGGATGCAA
GATGAACAATATGTGGTTGGGGGGTGGTGGAGGAATTGGGCGGGTGTGTGGGGTGGGTGTCGTAC
GGGATGTGATATTCTTTGGAAATCCTATGTGTTTTCTTATTATGT
Right flanking sequence: Indices 112989 -- 113488
ATCTCTTTGTCTACGCTCGTTATTATTTTCGCTACATTTGCAACCTGTGGCTCCAGGCCGTGCAG
ATGGAAGCGATTCGTGGAAGATTGGCTCGGGAACACGGCAGCCACATACGAGCGCCAGAACCCGT
GGTGGGAAGAAGTCCACCATGTTTGTAAGTCCGGGTTCGGAGGGTGCATGGCACGATGTGGTAAC
CACCGTTTGTATACAGGCTGATAGCTGCGATGGAATTTGTGCCATACAACGTGGCAGGTTGGGGG
CTAGTGGTGGAAACGTTGGTAGGTGAAACTAGGGTGGTTTTGTAGAGTGCGAGGGAGGCGTTTGC
TTGGCTATAGCAGCAATGCCGGTTAAAGTTTCTAGGACGGTGGACACCGGCTGTTGTTGTGACTG
GCATTGTGTCTGTTCCTCGATGACACATGAATCTGGCTGGTATATACAAGATCGTGTTTCAGGTC
TGAAGGAACTGACAGGATAGCTATACCGCTGCGAGTCTCGTGCCA
Found at i:114748 original size:17 final size:17
Alignment explanation
Indices: 114722--114754 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
114712 CAAGGAGAGG
114722 AGGGGGG-TTTGGTTTT
1 AGGGGGGTTTTGGTTTT
114738 AGGGGGTGTTTTGGTTT
1 AGGGGG-GTTTTGGTTT
114755 CAGATTGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 1 0.07
18 8 0.53
ACGTcount: A:0.06, C:0.00, G:0.48, T:0.45
Consensus pattern (17 bp):
AGGGGGGTTTTGGTTTT
Left flanking sequence: Indices 114222 -- 114721
TTGGAGACAATCGTCACCATAACCGTCCACATGTTGGTCACCGAGCCCACCAACACCACAAACTG
CACCACTTCCTTCCACCCCCAGTAGGTCTCGACGTAGCGCAGACCAAAGAAAAGCACCGCCACCA
GCAACAAGTAGGCAAACACCGAGATCTCGGCAAAGATCGCCGTCACCAACACCCACGGGTGGGTG
AACGTCAGCTTGGGAATCAACTGGAAGTTGGGCACCAACACGTCGTGGAACGTCAACAGCACATT
GGGGTCCGACGCCACCTCCTGCTGGAATCCGTTGATTTTCACCACGAAGATGATGCCGGAGATGA
ACGTCACCGCCCCGACTAGCGCTCGTGTGGATATCGGGACATTGCCAATCAGGAAACCCATGATG
TGTGCGCTGTTAGGGGTGAGATCAACAAAGATTTTCCACGGTGCGCGTGCATATGCTGATGGTAT
GGTGGTTGGAGATGGGGGGGCTACGTGGTGGTGGACAAGGAGAGG
Right flanking sequence: Indices 114755 -- 115254
CAGATTGTGGGTTGTGGGAGGGGTGTTGGTGGCGCTGGTGTGGCGTGTTAACATGGCACGAGGCT
TAACCTCGACGATTACGAGAACGTGTACACCAGCGAATACGAATGGCCCGTTTCGCAACGAAGCC
CGTGACGCCACGTATGTGTCAACGGTGAAACAAAGTTTAGACGGAAACGGCTGCACGCCATCCCA
GTTGGGGTAAGTTTTTCTTATCGAGGCGTTGTTTTTCGGAGACGAGCCCGTCCAATTATCACCCG
CAGACACAATAGGCCCATGGGCCACGAACAAGCTCGGATTGCATTGAATGTAAGGGGCACAATCG
TCTAGATCGTGGAGGAATAAGGTTGCTGGGTGGTTGCTGGGAGAGGGGTTAGTGGGTTAGGGTAG
GTTTGGAGCTAGTGGTTTGGATCTAGTGTGGTTTGGTGGGTGTGGTGGGTGTGTAGCGGGTGTGG
AGGTGGGTTTCGAAAGTGGGGTTTCGAACGTGCTAAAGTGGCACG
Found at i:116413 original size:14 final size:14
Alignment explanation
Indices: 116394--116421 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
116384 ACTGGGCGGG
116394 TGCGTGCCCGCGAC
1 TGCGTGCCCGCGAC
116408 TGCGTGCCCGCGAC
1 TGCGTGCCCGCGAC
116422 CGCATCCACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.43, G:0.36, T:0.14
Consensus pattern (14 bp):
TGCGTGCCCGCGAC
Left flanking sequence: Indices 115894 -- 116393
GGGAAAGGGGGGCGCAGCATTCTACTAAAGTTCTGGGACTTGGGGGGGCAGAAGCTGTTGCGCAC
GATGTGGCTGCGGTACTTTGACCAGTGCCACGGCATCATCTTCATCATCGACTCCACCGACACCG
AGCGGTTCGAGGAGTGCTACCAGACGATCGTCGAGGTGGCACACGACAACGCGTGGGAGGGGCTG
GTCAACGTGCCGATCTTGATGTTGGCCAACAAGCAGGACTTGCCCCAGGCGGTGGACTTGGTGGC
GTTGAAGACGGGGGTGTTCATCCAGCTCGTGCTGGAGCTCGAGGCCACCGACTCCAAGTTGTTGC
CGGTGCTGGTGTTGGAGAACCAGGGGCTCCGGGAGAGTCTCGAGTGGTTGGTGCTGCGGTTGATT
TACAACAAGGGCAACAAGCGGCCCGAGTACAAGTAGAGCGAGTCTCTTAATAAATAAGCACAAGC
GTTTTGTATGCTTCATCGGGAAATGTGATCCCCACACTGGGCGGG
Right flanking sequence: Indices 116422 -- 116921
CGCATCCACCATGGCATCGGTTGATTCGGCGCGTCGTTAACCTTAGGGCTGTGGCGTGCTGCTCC
GCCTTGTAGAATTGGCGGTCGAAACAGGGCGGAATGGGATCAGCTGTTTCGACCTCACTCCACCC
AAACCCGTCGCGTCGCCCCCAGGGAATTTTCACCGGGCTCGGCTACAATTGCTTTTCCCCCGTAT
TTAGGTTCGTGTTCGGGCCCGGGTACAGTTGTTGTTTTGGCCACCACGCCTACATGTGTCAAACG
TTCGATGGGGCGGCCAGATGCCCGGCCGCCTAACCCAGATCGGTCACAATGACAACCAACACTTA
CGTAGTTTTACATCTAGCCCCCCGGTTGCCCGATTGAGGGGTAAGGTTTACACCCTCCGCTCGTG
CATGGCTCGCTTAAACGCAGTCGTCTGACGTTGTGCTGGTCTGAGCACATCTGCAGGCCAGGGGC
ACTGCTGCAGGCACACCGGCCAACGGCTGCACGCGCACGGTGCAG
Found at i:117623 original size:9 final size:9
Alignment explanation
Indices: 117609--117633 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
117599 AACCTCGCAG
117609 ACACCCCAC
1 ACACCCCAC
117618 ACACCCCAC
1 ACACCCCAC
117627 ACACCCC
1 ACACCCC
117634 GACGATGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (9 bp):
ACACCCCAC
Left flanking sequence: Indices 117109 -- 117608
TGCAACTGGTGATAAATACGTCGGGGGGCCCGCTGCTGGCTGGCGATCGGACATGGAGAAGATCA
AGTCGTTGTTCAGGCACCACACCCAGCGGCTCAAGCTGGCGCTGGTGGTGGGCACTGCGGTTTCA
CCCGCGTATGGGCGCCGCCCCCACGATGAGGTGTTAGAGACGGCTAATGGCGAGATTCTGGCGCT
GGTGAATCTGGTGCCATATGTGGCTAAAGTGAGTCTGGAGCTGGTGCCCAAGGTGGCGAGTCTGA
TGCCATACGAGGTGGCCAAGGTGGGTCTGGAGCTGGTGCCCAACGTGGTGACCCCAGAAGTAGTC
CCATTGGCTCGCTCGCCAACACCAGCCCTAGACACCCTCGCTCCCCCGTCCTGTGACCGGTTGGA
GCGCCCGTTCCGCCCAGACACCAGCAGCGACGAGTTCCCGCCGCCGCTGATCGACCTCGACAACG
CCCCCTACAGTCTCAACAGCCCGGTGGCCATCCCCAACCTCGCAG
Right flanking sequence: Indices 117634 -- 118133
GACGATGGAAACGGTGTTGGAAGCGCTCCCGCTGGAACTGCCGTTGCCCCTGCCTATGCTGATGC
ACCTGCCACCGCCCAAGGTGGTGGCAGCCCCGCTCCGCGAGCGTGCCAGCTTCTACTGTCCCACC
GAGTACGTGCTCTGCATGAAACGGGTGTCGGCCCGTGCACCCGCCAAGGGCTTTGTGCGGGTGCA
GAGCACCACCGACCGCGACCAGGCCATGGCACTCGCCCGCACCGCACTCGACAAGTTGGACTACG
AGCTGCTCGCGACGCTCACCGAGCTCAACATCAACTTCCACACCGGCCGCATGACCGACGCGCGG
GGCGTGTTCCTCGGGCTCGTCAACGACGACGTGGTGGTGCACGCCAACCACCGGGTCAAAAAAAA
AAAACTGAGGCTTGACTGGTTCGCCATCACCCCGGTGGTGGCCAATGCGTCCACGCGCACCAGCG
CGGCCAACTACACCAACGACACCGCTGACGGGTTCCTGACGTTTT
Found at i:118841 original size:11 final size:11
Alignment explanation
Indices: 118821--118870 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
118811 AGCCCCCGTG
118821 CCTATCCGTAA
1 CCTATCCGTAA
* *
118832 GCTTTCCGTAA
1 CCTATCCGTAA
118843 CCTATCCGTAA
1 CCTATCCGTAA
**
118854 CCTCGCCGTAA
1 CCTATCCGTAA
118865 CCTATC
1 CCTATC
118871 TCTACAGTGC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.22, C:0.38, G:0.12, T:0.28
Consensus pattern (11 bp):
CCTATCCGTAA
Left flanking sequence: Indices 118321 -- 118820
TGGATCCGCTGCTCTGGTGGATCCTCTGGTTGACCCTCCAGTGAACCCTCCAGTGAACCCTCTGG
TGGACCAGCGGATTGAACTTACGTAGTTGTCTAGACCCGGGCACCACGACCGCAGTCTGTGGGGG
CCCGCGGAGCGCAGCCGGTCGCGACACCTCCACGCGTGGGCTCGGTGGTCGCGTTACCGCATTGG
GCGATTGGAGAACCCCCTTGCATGATGCGGAGACATCTGATTGCAACCACAACAGTTGCAGTCAC
AGTAGCACAGGGTTAATGAATGACACACTACACGTAATTGTGTTCCGGGCGCGGAGGCAACACAA
GCGGGTCCGCCACGTCCGCACCGTAAAAGTCGCCATCGGGGTGCCATTGTCGTGGCGCCATTGTC
CACCAGCGGGCGTGGGAGGACCGCCACCGATTGTCCGATCCAGCTGACGACGCCAAGCACGGGGG
CCGGCGCGGACTCGCGTTCGGCCGATACATGTACGAGCCCCCGTG
Right flanking sequence: Indices 118871 -- 119370
TCTACAGTGCCAGTGTGCAGTGTGCCAGTGTGCAGTGTGCAATGTGCCAGTGTGCAAGCGGTGCA
AGTGCAAGCAACCATTTTTACGCACTGGTTAAGGGCCACGGCAATTGGCTCGAGGCCCAAGCCGG
GTGGCCCACCGTTGCCACGCCCACGGGACGTGTCGCCAGACGTCACCGTCGCAGCCAGCCCCCGG
TGGCGAGGCGCCTCGAGGCATTACCGATGGCCTCTCTGGGAAAAACTAATGTGCATATAACACGC
CACGATAAAGGGGTCACCGCAGCCGTAGCCGGTAGCCACCCCCGTAGCCCCGTAGATCAATTGCC
ACCAGGCCGTGGTGCTCGCTGCCCTGGCCCTGGCGGCCTAAGCCCCGCAACCACGCGCACCCGCG
GTTGCCGTATGACGACACCCTACTTGTGCTTCCCCACTGAAATTGGTGCGTGTGCGATAGCAATA
ATCGTCAACTTTTTTGCAAGCAACCCGACAGCGAGACGACCATCC
Found at i:118846 original size:22 final size:22
Alignment explanation
Indices: 118821--118870 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
118811 AGCCCCCGTG
* **
118821 CCTATCCGTAAGCTTTCCGTAA
1 CCTATCCGTAACCTCGCCGTAA
118843 CCTATCCGTAACCTCGCCGTAA
1 CCTATCCGTAACCTCGCCGTAA
118865 CCTATC
1 CCTATC
118871 TCTACAGTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.22, C:0.38, G:0.12, T:0.28
Consensus pattern (22 bp):
CCTATCCGTAACCTCGCCGTAA
Left flanking sequence: Indices 118321 -- 118820
TGGATCCGCTGCTCTGGTGGATCCTCTGGTTGACCCTCCAGTGAACCCTCCAGTGAACCCTCTGG
TGGACCAGCGGATTGAACTTACGTAGTTGTCTAGACCCGGGCACCACGACCGCAGTCTGTGGGGG
CCCGCGGAGCGCAGCCGGTCGCGACACCTCCACGCGTGGGCTCGGTGGTCGCGTTACCGCATTGG
GCGATTGGAGAACCCCCTTGCATGATGCGGAGACATCTGATTGCAACCACAACAGTTGCAGTCAC
AGTAGCACAGGGTTAATGAATGACACACTACACGTAATTGTGTTCCGGGCGCGGAGGCAACACAA
GCGGGTCCGCCACGTCCGCACCGTAAAAGTCGCCATCGGGGTGCCATTGTCGTGGCGCCATTGTC
CACCAGCGGGCGTGGGAGGACCGCCACCGATTGTCCGATCCAGCTGACGACGCCAAGCACGGGGG
CCGGCGCGGACTCGCGTTCGGCCGATACATGTACGAGCCCCCGTG
Right flanking sequence: Indices 118871 -- 119370
TCTACAGTGCCAGTGTGCAGTGTGCCAGTGTGCAGTGTGCAATGTGCCAGTGTGCAAGCGGTGCA
AGTGCAAGCAACCATTTTTACGCACTGGTTAAGGGCCACGGCAATTGGCTCGAGGCCCAAGCCGG
GTGGCCCACCGTTGCCACGCCCACGGGACGTGTCGCCAGACGTCACCGTCGCAGCCAGCCCCCGG
TGGCGAGGCGCCTCGAGGCATTACCGATGGCCTCTCTGGGAAAAACTAATGTGCATATAACACGC
CACGATAAAGGGGTCACCGCAGCCGTAGCCGGTAGCCACCCCCGTAGCCCCGTAGATCAATTGCC
ACCAGGCCGTGGTGCTCGCTGCCCTGGCCCTGGCGGCCTAAGCCCCGCAACCACGCGCACCCGCG
GTTGCCGTATGACGACACCCTACTTGTGCTTCCCCACTGAAATTGGTGCGTGTGCGATAGCAATA
ATCGTCAACTTTTTTGCAAGCAACCCGACAGCGAGACGACCATCC
Found at i:118893 original size:7 final size:7
Alignment explanation
Indices: 118881--118926 Score: 65
Period size: 7 Copynumber: 6.3 Consensus size: 7
118871 TCTACAGTGC
118881 CAGTGTG
1 CAGTGTG
118888 CAGTGTG
1 CAGTGTG
118895 CCAGTGTG
1 -CAGTGTG
118903 CAGTGTG
1 CAGTGTG
*
118910 CAATGTG
1 CAGTGTG
118917 CCAGTGTG
1 -CAGTGTG
118925 CA
1 CA
118927 AGCGGTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 22 0.63
8 13 0.37
ACGTcount: A:0.17, C:0.20, G:0.37, T:0.26
Consensus pattern (7 bp):
CAGTGTG
Left flanking sequence: Indices 118381 -- 118880
TCTGGTGGACCAGCGGATTGAACTTACGTAGTTGTCTAGACCCGGGCACCACGACCGCAGTCTGT
GGGGGCCCGCGGAGCGCAGCCGGTCGCGACACCTCCACGCGTGGGCTCGGTGGTCGCGTTACCGC
ATTGGGCGATTGGAGAACCCCCTTGCATGATGCGGAGACATCTGATTGCAACCACAACAGTTGCA
GTCACAGTAGCACAGGGTTAATGAATGACACACTACACGTAATTGTGTTCCGGGCGCGGAGGCAA
CACAAGCGGGTCCGCCACGTCCGCACCGTAAAAGTCGCCATCGGGGTGCCATTGTCGTGGCGCCA
TTGTCCACCAGCGGGCGTGGGAGGACCGCCACCGATTGTCCGATCCAGCTGACGACGCCAAGCAC
GGGGGCCGGCGCGGACTCGCGTTCGGCCGATACATGTACGAGCCCCCGTGCCTATCCGTAAGCTT
TCCGTAACCTATCCGTAACCTCGCCGTAACCTATCTCTACAGTGC
Right flanking sequence: Indices 118927 -- 119426
AGCGGTGCAAGTGCAAGCAACCATTTTTACGCACTGGTTAAGGGCCACGGCAATTGGCTCGAGGC
CCAAGCCGGGTGGCCCACCGTTGCCACGCCCACGGGACGTGTCGCCAGACGTCACCGTCGCAGCC
AGCCCCCGGTGGCGAGGCGCCTCGAGGCATTACCGATGGCCTCTCTGGGAAAAACTAATGTGCAT
ATAACACGCCACGATAAAGGGGTCACCGCAGCCGTAGCCGGTAGCCACCCCCGTAGCCCCGTAGA
TCAATTGCCACCAGGCCGTGGTGCTCGCTGCCCTGGCCCTGGCGGCCTAAGCCCCGCAACCACGC
GCACCCGCGGTTGCCGTATGACGACACCCTACTTGTGCTTCCCCACTGAAATTGGTGCGTGTGCG
ATAGCAATAATCGTCAACTTTTTTGCAAGCAACCCGACAGCGAGACGACCATCCGACCCATTGCC
TGGCTAGAACCCCTACTGCCCAGCTAGATCGATAGTCTGTCCCCC
Found at i:118897 original size:15 final size:15
Alignment explanation
Indices: 118877--118925 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
118867 TATCTCTACA
118877 GTGCCAGTGTGCAGT
1 GTGCCAGTGTGCAGT
118892 GTGCCAGTGTGCAGT
1 GTGCCAGTGTGCAGT
*
118907 GTG-CAATGTGCCAGT
1 GTGCCAGTGTG-CAGT
118922 GTGC
1 GTGC
118926 AAGCGGTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
14 6 0.19
15 25 0.81
ACGTcount: A:0.14, C:0.20, G:0.39, T:0.27
Consensus pattern (15 bp):
GTGCCAGTGTGCAGT
Left flanking sequence: Indices 118377 -- 118876
ACCCTCTGGTGGACCAGCGGATTGAACTTACGTAGTTGTCTAGACCCGGGCACCACGACCGCAGT
CTGTGGGGGCCCGCGGAGCGCAGCCGGTCGCGACACCTCCACGCGTGGGCTCGGTGGTCGCGTTA
CCGCATTGGGCGATTGGAGAACCCCCTTGCATGATGCGGAGACATCTGATTGCAACCACAACAGT
TGCAGTCACAGTAGCACAGGGTTAATGAATGACACACTACACGTAATTGTGTTCCGGGCGCGGAG
GCAACACAAGCGGGTCCGCCACGTCCGCACCGTAAAAGTCGCCATCGGGGTGCCATTGTCGTGGC
GCCATTGTCCACCAGCGGGCGTGGGAGGACCGCCACCGATTGTCCGATCCAGCTGACGACGCCAA
GCACGGGGGCCGGCGCGGACTCGCGTTCGGCCGATACATGTACGAGCCCCCGTGCCTATCCGTAA
GCTTTCCGTAACCTATCCGTAACCTCGCCGTAACCTATCTCTACA
Right flanking sequence: Indices 118926 -- 119425
AAGCGGTGCAAGTGCAAGCAACCATTTTTACGCACTGGTTAAGGGCCACGGCAATTGGCTCGAGG
CCCAAGCCGGGTGGCCCACCGTTGCCACGCCCACGGGACGTGTCGCCAGACGTCACCGTCGCAGC
CAGCCCCCGGTGGCGAGGCGCCTCGAGGCATTACCGATGGCCTCTCTGGGAAAAACTAATGTGCA
TATAACACGCCACGATAAAGGGGTCACCGCAGCCGTAGCCGGTAGCCACCCCCGTAGCCCCGTAG
ATCAATTGCCACCAGGCCGTGGTGCTCGCTGCCCTGGCCCTGGCGGCCTAAGCCCCGCAACCACG
CGCACCCGCGGTTGCCGTATGACGACACCCTACTTGTGCTTCCCCACTGAAATTGGTGCGTGTGC
GATAGCAATAATCGTCAACTTTTTTGCAAGCAACCCGACAGCGAGACGACCATCCGACCCATTGC
CTGGCTAGAACCCCTACTGCCCAGCTAGATCGATAGTCTGTCCCC
Found at i:118907 original size:22 final size:22
Alignment explanation
Indices: 118881--118926 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
118871 TCTACAGTGC
*
118881 CAGTGTGCAGTGTGCCAGTGTG
1 CAGTGTGCAATGTGCCAGTGTG
118903 CAGTGTGCAATGTGCCAGTGTG
1 CAGTGTGCAATGTGCCAGTGTG
118925 CA
1 CA
118927 AGCGGTGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.20, G:0.37, T:0.26
Consensus pattern (22 bp):
CAGTGTGCAATGTGCCAGTGTG
Left flanking sequence: Indices 118381 -- 118880
TCTGGTGGACCAGCGGATTGAACTTACGTAGTTGTCTAGACCCGGGCACCACGACCGCAGTCTGT
GGGGGCCCGCGGAGCGCAGCCGGTCGCGACACCTCCACGCGTGGGCTCGGTGGTCGCGTTACCGC
ATTGGGCGATTGGAGAACCCCCTTGCATGATGCGGAGACATCTGATTGCAACCACAACAGTTGCA
GTCACAGTAGCACAGGGTTAATGAATGACACACTACACGTAATTGTGTTCCGGGCGCGGAGGCAA
CACAAGCGGGTCCGCCACGTCCGCACCGTAAAAGTCGCCATCGGGGTGCCATTGTCGTGGCGCCA
TTGTCCACCAGCGGGCGTGGGAGGACCGCCACCGATTGTCCGATCCAGCTGACGACGCCAAGCAC
GGGGGCCGGCGCGGACTCGCGTTCGGCCGATACATGTACGAGCCCCCGTGCCTATCCGTAAGCTT
TCCGTAACCTATCCGTAACCTCGCCGTAACCTATCTCTACAGTGC
Right flanking sequence: Indices 118927 -- 119426
AGCGGTGCAAGTGCAAGCAACCATTTTTACGCACTGGTTAAGGGCCACGGCAATTGGCTCGAGGC
CCAAGCCGGGTGGCCCACCGTTGCCACGCCCACGGGACGTGTCGCCAGACGTCACCGTCGCAGCC
AGCCCCCGGTGGCGAGGCGCCTCGAGGCATTACCGATGGCCTCTCTGGGAAAAACTAATGTGCAT
ATAACACGCCACGATAAAGGGGTCACCGCAGCCGTAGCCGGTAGCCACCCCCGTAGCCCCGTAGA
TCAATTGCCACCAGGCCGTGGTGCTCGCTGCCCTGGCCCTGGCGGCCTAAGCCCCGCAACCACGC
GCACCCGCGGTTGCCGTATGACGACACCCTACTTGTGCTTCCCCACTGAAATTGGTGCGTGTGCG
ATAGCAATAATCGTCAACTTTTTTGCAAGCAACCCGACAGCGAGACGACCATCCGACCCATTGCC
TGGCTAGAACCCCTACTGCCCAGCTAGATCGATAGTCTGTCCCCC
Found at i:119796 original size:9 final size:9
Alignment explanation
Indices: 119785--119822 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
119775 ACCGGCGCCG
119785 CCGG-GCCT
1 CCGGTGCCT
119793 GCCGGTGCCT
1 -CCGGTGCCT
119803 CCGGTGCCT
1 CCGGTGCCT
119812 CCGGTGCCT
1 CCGGTGCCT
119821 CC
1 CC
119823 CCGAGCACCG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 24 0.86
10 4 0.14
ACGTcount: A:0.00, C:0.47, G:0.34, T:0.18
Consensus pattern (9 bp):
CCGGTGCCT
Left flanking sequence: Indices 119285 -- 119784
TGTGCTTCCCCACTGAAATTGGTGCGTGTGCGATAGCAATAATCGTCAACTTTTTTGCAAGCAAC
CCGACAGCGAGACGACCATCCGACCCATTGCCTGGCTAGAACCCCTACTGCCCAGCTAGATCGAT
AGTCTGTCCCCCTAGAGTGCCAATTGACTGTATCGCCGCACCGCACCCCCCGAATCCGTGCCCCT
ACCGTCAACTGCCATGAGTACTTCCAAAGGCAAGTTGTTTGACAAGTTCAAGAAACCGTTCCGCT
CGCACTCGCGGTCGTCGCTGGAGGTGAAGCCCGACGACCTCCCGGACCCCTCCGTCAAGCGCAGC
CAGTCCACCAAGGTGGCCGGTGCCGACGCCCGGGTGCTGGAGGACACGCCCCACCGGTCGTTCAC
CCAGCTGCACCCGAAGAAGCACGAGCGCTACGCCAGCCAGGACTCGCGCGACCACCAGCAGGCCC
AGTACCCGGGCAAGGGCCACCTGCGCGGCCCGTCCACCGGCGCCG
Right flanking sequence: Indices 119823 -- 120322
CCGAGCACCGGCCACCGCCGCACCCCGCTGGCACCCACCACGTTGGACCCGTTGAGCCAGAAGCT
GGCGGTGCCGCCCCACGTCAAGGAGCCGCGGGCCCAGCAGTACTTGCTGCCGTTGGACGACGACG
GCGAGAACGCGCTGACGCTTGCGTTGTACCCGGACCTGGGCCGCGAGCTGCTGCCGATGTCGGGG
TTGGGCCGCAAGACCCCTGTGGACACCCGCAGCCCGTTGGCGGACCCGGACCGCTCGGACTATAG
CAAGACCGCGACGGGCGATACTTATAAGCAAGCGGGCAAGCAGGACGCTGGCACCAAGCAGTCGC
AATTGGGAGCTGGCGACAACAAGCAGGAAGCTGCCACTGCCCCTGGCTCGGGCTCGGGCTCGGGC
TCTGGCCTCAAAGGAGCGTTGGCCAAGGTCGGCTTAGGAAAGCGCGACCTGGACCACGAGCCACC
GGTGCCCGCCCACCCCACCCAGCGCCGCAAGCTGTCGGCCGGCTC
Found at i:120691 original size:12 final size:12
Alignment explanation
Indices: 120674--120700 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
120664 CCAGCTATGG
120674 TGGTCACAACAC
1 TGGTCACAACAC
120686 TGGTCACAACAC
1 TGGTCACAACAC
120698 TGG
1 TGG
120701 CCAAGCTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (12 bp):
TGGTCACAACAC
Left flanking sequence: Indices 120174 -- 120673
GAAGCTGCCACTGCCCCTGGCTCGGGCTCGGGCTCGGGCTCTGGCCTCAAAGGAGCGTTGGCCAA
GGTCGGCTTAGGAAAGCGCGACCTGGACCACGAGCCACCGGTGCCCGCCCACCCCACCCAGCGCC
GCAAGCTGTCGGCCGGCTCGCAGACCGCGGCGGTGGCTGAGCTGTTGGGCAAGCCGCTGATCCAC
AGCGGGCCCGAGTTTGACGCGTACGAGCGGTTCCCCGACCAGGCCACCAGCCCGACGTCGCACCG
GCGGTCGCACCTGGCGCTTGCGCCCGAGGACGCGCCATTGCCGGCCAACGAGGTGGCCCAGCTCT
CGCTGCCGCGGCGGAGCTTTGGGTCGCCTGGCGAAGGGCGGTCGCGCAAGTCGCAGGACGCCAGT
CCGTTGGGCGGCCACGGGAGCAGTGGCCACGGCAACGCGGCCGGTGTGGCTGCTGGAGCCGCTGC
TGGAGCCCTTGGGGGCGCCGCTCTCGGTCACAACGCCAGCTATGG
Right flanking sequence: Indices 120701 -- 121200
CCAAGCTACCAACACTGGCTATGGTACTAACACTGGCCATGGCAATGCCCAAGACTTCACTCGCG
ATGCCTCAGACCCCACCGCGGCTCTTGCCTCGGCCCCGGAAAACCCGTCATACTCTGCCTCGGAC
GCTGCCCGAGACCCGAAGGAGGTGATCATGCAGCACTTGGCCCACCAGCGCACGAAACTGTCGGA
TTCAGGCTCTGGTGCTGCTGGTGCTGGTGTAGGTGCTGGTGCTGGTGCTACTGGCATTGGTGCTG
CTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGGTAACTCTACTGGCTCT
ACTGGCATTGGTGCTTCTGGTTCAACGGGCACCACCGCACCCCCCCTGGCGTTGCGCCAGTCCCA
GGGCTCCCCCGCCGCCCTGCTGGACGTGATCGTGCTGGTCCAGGGCACCCGCGACAACGACCTCG
CCACCAAGGTCGCCCAAAAGGCGGTCGAGCAGCTCAAACGCAACA
Found at i:120742 original size:18 final size:18
Alignment explanation
Indices: 120692--120742 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
120682 ACACTGGTCA
* *
120692 CAACACTGGCCAAGCTAC
1 CAACACTGGCCATGGTAC
*
120710 CAACACTGGCTATGGTAC
1 CAACACTGGCCATGGTAC
*
120728 TAACACTGGCCATGG
1 CAACACTGGCCATGG
120743 CAATGCCCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (18 bp):
CAACACTGGCCATGGTAC
Left flanking sequence: Indices 120192 -- 120691
GGCTCGGGCTCGGGCTCGGGCTCTGGCCTCAAAGGAGCGTTGGCCAAGGTCGGCTTAGGAAAGCG
CGACCTGGACCACGAGCCACCGGTGCCCGCCCACCCCACCCAGCGCCGCAAGCTGTCGGCCGGCT
CGCAGACCGCGGCGGTGGCTGAGCTGTTGGGCAAGCCGCTGATCCACAGCGGGCCCGAGTTTGAC
GCGTACGAGCGGTTCCCCGACCAGGCCACCAGCCCGACGTCGCACCGGCGGTCGCACCTGGCGCT
TGCGCCCGAGGACGCGCCATTGCCGGCCAACGAGGTGGCCCAGCTCTCGCTGCCGCGGCGGAGCT
TTGGGTCGCCTGGCGAAGGGCGGTCGCGCAAGTCGCAGGACGCCAGTCCGTTGGGCGGCCACGGG
AGCAGTGGCCACGGCAACGCGGCCGGTGTGGCTGCTGGAGCCGCTGCTGGAGCCCTTGGGGGCGC
CGCTCTCGGTCACAACGCCAGCTATGGTGGTCACAACACTGGTCA
Right flanking sequence: Indices 120743 -- 121242
CAATGCCCAAGACTTCACTCGCGATGCCTCAGACCCCACCGCGGCTCTTGCCTCGGCCCCGGAAA
ACCCGTCATACTCTGCCTCGGACGCTGCCCGAGACCCGAAGGAGGTGATCATGCAGCACTTGGCC
CACCAGCGCACGAAACTGTCGGATTCAGGCTCTGGTGCTGCTGGTGCTGGTGTAGGTGCTGGTGC
TGGTGCTACTGGCATTGGTGCTGCTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGGTG
CTACTGGTAACTCTACTGGCTCTACTGGCATTGGTGCTTCTGGTTCAACGGGCACCACCGCACCC
CCCCTGGCGTTGCGCCAGTCCCAGGGCTCCCCCGCCGCCCTGCTGGACGTGATCGTGCTGGTCCA
GGGCACCCGCGACAACGACCTCGCCACCAAGGTCGCCCAAAAGGCGGTCGAGCAGCTCAAACGCA
ACACCCCCGAGTTGTTGGCCCGGGCCCGCGAGTTGCGCATCAACG
Found at i:120918 original size:9 final size:9
Alignment explanation
Indices: 120904--121010 Score: 81
Period size: 9 Copynumber: 11.6 Consensus size: 9
120894 GATTCAGGCT
120904 CTGGTGCTG
1 CTGGTGCTG
120913 CTGGTGCTG
1 CTGGTGCTG
* *
120922 GT-GTAGGTG
1 CTGGT-GCTG
120931 CTGGTGCTG
1 CTGGTGCTG
* * *
120940 GTGCTACTGG
1 CTGGTGCT-G
120950 CATTGGTGCTG
1 C--TGGTGCTG
*
120961 CTGGTGCTA
1 CTGGTGCTG
*
120970 CTGGTGCTA
1 CTGGTGCTG
*
120979 CTGGTGCTA
1 CTGGTGCTG
*
120988 CTGGTGCTA
1 CTGGTGCTG
*
120997 CTGGTGCTA
1 CTGGTGCTG
121006 CTGGT
1 CTGGT
121011 AACTCTACTG
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
8 2 0.02
9 70 0.85
10 3 0.04
11 2 0.02
12 5 0.06
ACGTcount: A:0.07, C:0.20, G:0.39, T:0.34
Consensus pattern (9 bp):
CTGGTGCTG
Left flanking sequence: Indices 120404 -- 120903
CGACCAGGCCACCAGCCCGACGTCGCACCGGCGGTCGCACCTGGCGCTTGCGCCCGAGGACGCGC
CATTGCCGGCCAACGAGGTGGCCCAGCTCTCGCTGCCGCGGCGGAGCTTTGGGTCGCCTGGCGAA
GGGCGGTCGCGCAAGTCGCAGGACGCCAGTCCGTTGGGCGGCCACGGGAGCAGTGGCCACGGCAA
CGCGGCCGGTGTGGCTGCTGGAGCCGCTGCTGGAGCCCTTGGGGGCGCCGCTCTCGGTCACAACG
CCAGCTATGGTGGTCACAACACTGGTCACAACACTGGCCAAGCTACCAACACTGGCTATGGTACT
AACACTGGCCATGGCAATGCCCAAGACTTCACTCGCGATGCCTCAGACCCCACCGCGGCTCTTGC
CTCGGCCCCGGAAAACCCGTCATACTCTGCCTCGGACGCTGCCCGAGACCCGAAGGAGGTGATCA
TGCAGCACTTGGCCCACCAGCGCACGAAACTGTCGGATTCAGGCT
Right flanking sequence: Indices 121011 -- 121510
AACTCTACTGGCTCTACTGGCATTGGTGCTTCTGGTTCAACGGGCACCACCGCACCCCCCCTGGC
GTTGCGCCAGTCCCAGGGCTCCCCCGCCGCCCTGCTGGACGTGATCGTGCTGGTCCAGGGCACCC
GCGACAACGACCTCGCCACCAAGGTCGCCCAAAAGGCGGTCGAGCAGCTCAAACGCAACACCCCC
GAGTTGTTGGCCCGGGCCCGCGAGTTGCGCATCAACGTGGTCTCCGGCGCCATCAGCGACCAGCA
CGGCCAGGTGATTGCCCACGTGGACGGCTACGGCGGGCCCATCGAGAACCGCGGTGCCGAGGGCG
TGGCCAAGGCGGTGTCGGACGTGGGCTCGCGCCAGATGGCCGAGCAGACGCAGGGCCAGGCCCCT
TCACTGAGCCAGGCTCAACTGAACCAAGCCACTTCTCAGCCGGCCACTTCTCACCAGGCCACTTC
TCAGCCGGCACCCGGTGTGCCGCACGGGTTCGTCGAGCTGGTGGA
Found at i:120922 original size:6 final size:6
Alignment explanation
Indices: 120911--120944 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
120901 GCTCTGGTGC
120911 TGCTGG TGCTGG TG-TAGG TGCTGG TGCTGG TGCT
1 TGCTGG TGCTGG TGCT-GG TGCTGG TGCTGG TGCT
120945 ACTGGCATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 1 0.04
6 24 0.92
7 1 0.04
ACGTcount: A:0.03, C:0.15, G:0.47, T:0.35
Consensus pattern (6 bp):
TGCTGG
Left flanking sequence: Indices 120411 -- 120910
GCCACCAGCCCGACGTCGCACCGGCGGTCGCACCTGGCGCTTGCGCCCGAGGACGCGCCATTGCC
GGCCAACGAGGTGGCCCAGCTCTCGCTGCCGCGGCGGAGCTTTGGGTCGCCTGGCGAAGGGCGGT
CGCGCAAGTCGCAGGACGCCAGTCCGTTGGGCGGCCACGGGAGCAGTGGCCACGGCAACGCGGCC
GGTGTGGCTGCTGGAGCCGCTGCTGGAGCCCTTGGGGGCGCCGCTCTCGGTCACAACGCCAGCTA
TGGTGGTCACAACACTGGTCACAACACTGGCCAAGCTACCAACACTGGCTATGGTACTAACACTG
GCCATGGCAATGCCCAAGACTTCACTCGCGATGCCTCAGACCCCACCGCGGCTCTTGCCTCGGCC
CCGGAAAACCCGTCATACTCTGCCTCGGACGCTGCCCGAGACCCGAAGGAGGTGATCATGCAGCA
CTTGGCCCACCAGCGCACGAAACTGTCGGATTCAGGCTCTGGTGC
Right flanking sequence: Indices 120945 -- 121444
ACTGGCATTGGTGCTGCTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGGTGCTACTGG
TAACTCTACTGGCTCTACTGGCATTGGTGCTTCTGGTTCAACGGGCACCACCGCACCCCCCCTGG
CGTTGCGCCAGTCCCAGGGCTCCCCCGCCGCCCTGCTGGACGTGATCGTGCTGGTCCAGGGCACC
CGCGACAACGACCTCGCCACCAAGGTCGCCCAAAAGGCGGTCGAGCAGCTCAAACGCAACACCCC
CGAGTTGTTGGCCCGGGCCCGCGAGTTGCGCATCAACGTGGTCTCCGGCGCCATCAGCGACCAGC
ACGGCCAGGTGATTGCCCACGTGGACGGCTACGGCGGGCCCATCGAGAACCGCGGTGCCGAGGGC
GTGGCCAAGGCGGTGTCGGACGTGGGCTCGCGCCAGATGGCCGAGCAGACGCAGGGCCAGGCCCC
TTCACTGAGCCAGGCTCAACTGAACCAAGCCACTTCTCAGCCGGC
Found at i:121030 original size:9 final size:9
Alignment explanation
Indices: 120937--121010 Score: 109
Period size: 9 Copynumber: 8.6 Consensus size: 9
120927 GGTGCTGGTG
120937 CTGGTGCTA
1 CTGGTGCTA
120946 CT-G-GC-A
1 CTGGTGCTA
* *
120952 TTGGTGCTG
1 CTGGTGCTA
120961 CTGGTGCTA
1 CTGGTGCTA
120970 CTGGTGCTA
1 CTGGTGCTA
120979 CTGGTGCTA
1 CTGGTGCTA
120988 CTGGTGCTA
1 CTGGTGCTA
120997 CTGGTGCTA
1 CTGGTGCTA
121006 CTGGT
1 CTGGT
121011 AACTCTACTG
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
6 2 0.03
7 3 0.05
8 3 0.05
9 50 0.86
ACGTcount: A:0.09, C:0.22, G:0.35, T:0.34
Consensus pattern (9 bp):
CTGGTGCTA
Left flanking sequence: Indices 120437 -- 120936
GTCGCACCTGGCGCTTGCGCCCGAGGACGCGCCATTGCCGGCCAACGAGGTGGCCCAGCTCTCGC
TGCCGCGGCGGAGCTTTGGGTCGCCTGGCGAAGGGCGGTCGCGCAAGTCGCAGGACGCCAGTCCG
TTGGGCGGCCACGGGAGCAGTGGCCACGGCAACGCGGCCGGTGTGGCTGCTGGAGCCGCTGCTGG
AGCCCTTGGGGGCGCCGCTCTCGGTCACAACGCCAGCTATGGTGGTCACAACACTGGTCACAACA
CTGGCCAAGCTACCAACACTGGCTATGGTACTAACACTGGCCATGGCAATGCCCAAGACTTCACT
CGCGATGCCTCAGACCCCACCGCGGCTCTTGCCTCGGCCCCGGAAAACCCGTCATACTCTGCCTC
GGACGCTGCCCGAGACCCGAAGGAGGTGATCATGCAGCACTTGGCCCACCAGCGCACGAAACTGT
CGGATTCAGGCTCTGGTGCTGCTGGTGCTGGTGTAGGTGCTGGTG
Right flanking sequence: Indices 121011 -- 121510
AACTCTACTGGCTCTACTGGCATTGGTGCTTCTGGTTCAACGGGCACCACCGCACCCCCCCTGGC
GTTGCGCCAGTCCCAGGGCTCCCCCGCCGCCCTGCTGGACGTGATCGTGCTGGTCCAGGGCACCC
GCGACAACGACCTCGCCACCAAGGTCGCCCAAAAGGCGGTCGAGCAGCTCAAACGCAACACCCCC
GAGTTGTTGGCCCGGGCCCGCGAGTTGCGCATCAACGTGGTCTCCGGCGCCATCAGCGACCAGCA
CGGCCAGGTGATTGCCCACGTGGACGGCTACGGCGGGCCCATCGAGAACCGCGGTGCCGAGGGCG
TGGCCAAGGCGGTGTCGGACGTGGGCTCGCGCCAGATGGCCGAGCAGACGCAGGGCCAGGCCCCT
TCACTGAGCCAGGCTCAACTGAACCAAGCCACTTCTCAGCCGGCCACTTCTCACCAGGCCACTTC
TCAGCCGGCACCCGGTGTGCCGCACGGGTTCGTCGAGCTGGTGGA
Found at i:121448 original size:15 final size:15
Alignment explanation
Indices: 121428--121474 Score: 78
Period size: 15 Copynumber: 3.1 Consensus size: 15
121418 ACTGAACCAA
121428 GCCACTTCTCAGCCG
1 GCCACTTCTCAGCCG
121443 GCCACTTCTCA-CCAG
1 GCCACTTCTCAGCC-G
121458 GCCACTTCTCAGCCG
1 GCCACTTCTCAGCCG
121473 GC
1 GC
121475 ACCCGGTGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.07
15 26 0.87
16 2 0.07
ACGTcount: A:0.15, C:0.47, G:0.19, T:0.19
Consensus pattern (15 bp):
GCCACTTCTCAGCCG
Left flanking sequence: Indices 120928 -- 121427
GTGCTGGTGCTGGTGCTACTGGCATTGGTGCTGCTGGTGCTACTGGTGCTACTGGTGCTACTGGT
GCTACTGGTGCTACTGGTAACTCTACTGGCTCTACTGGCATTGGTGCTTCTGGTTCAACGGGCAC
CACCGCACCCCCCCTGGCGTTGCGCCAGTCCCAGGGCTCCCCCGCCGCCCTGCTGGACGTGATCG
TGCTGGTCCAGGGCACCCGCGACAACGACCTCGCCACCAAGGTCGCCCAAAAGGCGGTCGAGCAG
CTCAAACGCAACACCCCCGAGTTGTTGGCCCGGGCCCGCGAGTTGCGCATCAACGTGGTCTCCGG
CGCCATCAGCGACCAGCACGGCCAGGTGATTGCCCACGTGGACGGCTACGGCGGGCCCATCGAGA
ACCGCGGTGCCGAGGGCGTGGCCAAGGCGGTGTCGGACGTGGGCTCGCGCCAGATGGCCGAGCAG
ACGCAGGGCCAGGCCCCTTCACTGAGCCAGGCTCAACTGAACCAA
Right flanking sequence: Indices 121475 -- 121974
ACCCGGTGTGCCGCACGGGTTCGTCGAGCTGGTGGACGTGCCCATGGCCCTGAGCCAGCTGCCCG
CTCGTGACCACAACTACAGCAACCGCCAGATGCACGGCAACGTGCACGGGCTGGCGTTTGGCGGC
GGGCTGCTCCAGGAGCTGCCGCAGCGGCACCGCAAGTCGGTGGCGCCGGTGGACTTGGCGATGGC
AGAGGCCCTGGGCATCGAGGTGGCGTCGCCGCCGTTGACACCCGGCCAAGACCACCCGCACCCGC
CCAAGGACCTGCTGGCCACCGGCCGCGACTTGGGCTGGCCCGCAGGCCCCACCACGGGTCAGTTG
AACGCGAGCCTGGCCCGCGAGTTCAACCAGGAGCACTCGCTCCGCCCGCCCAAGCACGCGCACCG
CCGGGCCGCGCTGCGGGACTTTGACACCGACGCCGCCCGCCACTTGGGCGGCGACCAGGCGGTGC
TGCGCGGGGTGATGAACCGCGAGCCCAGCAACGTGCTCATTCCGC
Found at i:122337 original size:15 final size:15
Alignment explanation
Indices: 122319--122354 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
122309 CGGGCCCCAC
*
122319 CTGCCGGTGCCCAAG
1 CTGCCCGTGCCCAAG
122334 CTGCCCGTGCCCAAG
1 CTGCCCGTGCCCAAG
122349 CTGCCC
1 CTGCCC
122355 AAGAACCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.47, G:0.28, T:0.14
Consensus pattern (15 bp):
CTGCCCGTGCCCAAG
Left flanking sequence: Indices 121819 -- 122318
AGTTCAACCAGGAGCACTCGCTCCGCCCGCCCAAGCACGCGCACCGCCGGGCCGCGCTGCGGGAC
TTTGACACCGACGCCGCCCGCCACTTGGGCGGCGACCAGGCGGTGCTGCGCGGGGTGATGAACCG
CGAGCCCAGCAACGTGCTCATTCCGCAGCTGAAGCTGCTGCGGCAGGGGTCTGGGGTGGACCAGG
CCGGTGACTACCAGGTCAACCCGGTGCCAGAGGAGTTCCACCACGAGGGCCAGGGTCAGGGCCAC
GAGCCCTCTCAGCTGGCTCTGTCTCCCTACCACGGGGCCATAGGCGTCAGCCACGACGTGGACGG
GCCCGTCGAGGGCCAGCACTACCCACGTGACAAGAGCTACGGCGGGCAAACCACCCCCGTGGCGT
CCCACTTCGGCAACCGGGCCCTGCTGGCGCTGTACGGGCTGCAGGGCCTGCGGGCGAGTGCCTAC
GCTACGCCCCAGAGCCCGCGGCTCGACTTGGGTCCCGGGCCCCAC
Right flanking sequence: Indices 122355 -- 122854
AAGAACCTGAGCTCGTCGTTCCCGTTGGACGAGGCGCACCCGCTGATGGACGCGGTGATGGACCA
GACGCAGCGCCACTCGCACGGGGTGGACCAGACGCAGCGCCACTCGCACGGGTTGGCTCCGGTGG
CCGGTGGAGCCGCGTTGGGTGCCAGTGCTGCGGCCATTGGAGCCGGTTTTGGCGCCCATCTTGGC
GGTGACCAGGCCTCGCAACAGCCGCAACAGCCGCACGTGCCCGAGAACCACCGCAAGCGGCTGAA
CCTGGGCTCGCTGAACCACCGCCTGAAGCGCCTGGACCTGTTTGGCCGCAACCCGCTGCCCGACG
ACGTGCGCGGGCCCGCTCGCGACGCCGGCCACGTCCGCCAGCTGCTGCTGGGCCTGAACCGCGCG
GTGTTCCCCACCGAGCACGGCAACGACCGCTCGGGCGAGCGGGACTTGGCGCTGGTGCGGGACCA
CGACCCGGGCCGCCACCTCCAGGGCGCGGTGGTGAACGCCACGCC
Found at i:122447 original size:30 final size:30
Alignment explanation
Indices: 122413--122471 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
122403 GACGCGGTGA
122413 TGGACCAGACGCAGCGCCACTCGCACGGGG
1 TGGACCAGACGCAGCGCCACTCGCACGGGG
122443 TGGACCAGACGCAGCGCCACTCGCACGGG
1 TGGACCAGACGCAGCGCCACTCGCACGGG
122472 TTGGCTCCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.37, G:0.36, T:0.07
Consensus pattern (30 bp):
TGGACCAGACGCAGCGCCACTCGCACGGGG
Left flanking sequence: Indices 121913 -- 122412
CGGCGACCAGGCGGTGCTGCGCGGGGTGATGAACCGCGAGCCCAGCAACGTGCTCATTCCGCAGC
TGAAGCTGCTGCGGCAGGGGTCTGGGGTGGACCAGGCCGGTGACTACCAGGTCAACCCGGTGCCA
GAGGAGTTCCACCACGAGGGCCAGGGTCAGGGCCACGAGCCCTCTCAGCTGGCTCTGTCTCCCTA
CCACGGGGCCATAGGCGTCAGCCACGACGTGGACGGGCCCGTCGAGGGCCAGCACTACCCACGTG
ACAAGAGCTACGGCGGGCAAACCACCCCCGTGGCGTCCCACTTCGGCAACCGGGCCCTGCTGGCG
CTGTACGGGCTGCAGGGCCTGCGGGCGAGTGCCTACGCTACGCCCCAGAGCCCGCGGCTCGACTT
GGGTCCCGGGCCCCACCTGCCGGTGCCCAAGCTGCCCGTGCCCAAGCTGCCCAAGAACCTGAGCT
CGTCGTTCCCGTTGGACGAGGCGCACCCGCTGATGGACGCGGTGA
Right flanking sequence: Indices 122472 -- 122971
TTGGCTCCGGTGGCCGGTGGAGCCGCGTTGGGTGCCAGTGCTGCGGCCATTGGAGCCGGTTTTGG
CGCCCATCTTGGCGGTGACCAGGCCTCGCAACAGCCGCAACAGCCGCACGTGCCCGAGAACCACC
GCAAGCGGCTGAACCTGGGCTCGCTGAACCACCGCCTGAAGCGCCTGGACCTGTTTGGCCGCAAC
CCGCTGCCCGACGACGTGCGCGGGCCCGCTCGCGACGCCGGCCACGTCCGCCAGCTGCTGCTGGG
CCTGAACCGCGCGGTGTTCCCCACCGAGCACGGCAACGACCGCTCGGGCGAGCGGGACTTGGCGC
TGGTGCGGGACCACGACCCGGGCCGCCACCTCCAGGGCGCGGTGGTGAACGCCACGCCGGCGTTG
AACCCGGAGCACGCCGACCTGGACGACACGCTCGACCAGCGGCAGTTGGCGTCGCTGGCGCCTGG
GCCGCTGGCGCTAGCCGGGAGCCCGCTCGGCCGCAACCCGGAGGG
Found at i:123142 original size:15 final size:15
Alignment explanation
Indices: 123122--123184 Score: 54
Period size: 15 Copynumber: 4.2 Consensus size: 15
123112 GTGGAGACGT
*
123122 TGGAAACCTTGAAGG
1 TGGAAACCTTCAAGG
* *
123137 TGGAAACGTTCAGGG
1 TGGAAACCTTCAAGG
** *
123152 TGGAAATATCCAAGG
1 TGGAAACCTTCAAGG
* *
123167 TGGAAACATTCAGGG
1 TGGAAACCTTCAAGG
123182 TGG
1 TGG
123185 TCAGATTGGT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.21
Consensus pattern (15 bp):
TGGAAACCTTCAAGG
Left flanking sequence: Indices 122622 -- 123121
TCGCTGAACCACCGCCTGAAGCGCCTGGACCTGTTTGGCCGCAACCCGCTGCCCGACGACGTGCG
CGGGCCCGCTCGCGACGCCGGCCACGTCCGCCAGCTGCTGCTGGGCCTGAACCGCGCGGTGTTCC
CCACCGAGCACGGCAACGACCGCTCGGGCGAGCGGGACTTGGCGCTGGTGCGGGACCACGACCCG
GGCCGCCACCTCCAGGGCGCGGTGGTGAACGCCACGCCGGCGTTGAACCCGGAGCACGCCGACCT
GGACGACACGCTCGACCAGCGGCAGTTGGCGTCGCTGGCGCCTGGGCCGCTGGCGCTAGCCGGGA
GCCCGCTCGGCCGCAACCCGGAGGGCGGCAAGCTGCTGGGCCTGGTGGCGACCGATGCCTCGGTT
AGGGACGCTCCGTTTGTGCTGAGCGGGGCCGACCGCACGATGGGCCCGTTGGGGCTGGCCCGGGA
CACCGTGCCTGATCCCAGTGTGGCAGGAGGCAGAGGTGGAGACGT
Right flanking sequence: Indices 123185 -- 123684
TCAGATTGGTCAAACTGGTCAAACTGGTCAGATTGGTCAACCTGGTCAATCTGGCCAATCTGGTC
AACCTGGTGACTTCCACCGCCAACAAATCGACCCGGCGTTGGCGCTGACAGGCACCATGGGCCCG
TTGGGCCTGGCCCGCGACACCGTGCCCGACCCCAGTGTGGCGTCGCTGCCCGATACTCCGTCCCG
TAAGCCCGCGGCCGAGTCGCCGTCGTTCTCGGTGGACCGCGAGAAGGTCAAGAGCCGGATGGGCG
CTGCCGGTGTGGGAGCCGGTGTGGGTGCTGGTGTAGGTGCCGCTGGCGCTGCCATTGCTCACGCG
TTTGGCTCCGGTAAGGACGAAGGCGGCGAGTTTGACCAGGGTGGTGTTGGTAAGCTGGTGAACCA
GGGTGGTTTAGCCCAAGAGCCCGTCCACCACCAGGGTAATCCATTCAACCCTGGCCAGGCGGTCC
AATCCAACCAGCAGTCCAACCAGCCTCAGTCCAACCAGCCTCAGT
Found at i:123194 original size:9 final size:9
Alignment explanation
Indices: 123191--123257 Score: 71
Period size: 9 Copynumber: 7.4 Consensus size: 9
123181 GTGGTCAGAT
123191 TGGTCAAAC
1 TGGTCAAAC
123200 TGGTCAAAC
1 TGGTCAAAC
* *
123209 TGGTCAGAT
1 TGGTCAAAC
*
123218 TGGTCAACC
1 TGGTCAAAC
*
123227 TGGTCAATC
1 TGGTCAAAC
* *
123236 TGGCCAATC
1 TGGTCAAAC
*
123245 TGGTCAACC
1 TGGTCAAAC
123254 TGGT
1 TGGT
123258 GACTTCCACC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (9 bp):
TGGTCAAAC
Left flanking sequence: Indices 122691 -- 123190
CCCGCTCGCGACGCCGGCCACGTCCGCCAGCTGCTGCTGGGCCTGAACCGCGCGGTGTTCCCCAC
CGAGCACGGCAACGACCGCTCGGGCGAGCGGGACTTGGCGCTGGTGCGGGACCACGACCCGGGCC
GCCACCTCCAGGGCGCGGTGGTGAACGCCACGCCGGCGTTGAACCCGGAGCACGCCGACCTGGAC
GACACGCTCGACCAGCGGCAGTTGGCGTCGCTGGCGCCTGGGCCGCTGGCGCTAGCCGGGAGCCC
GCTCGGCCGCAACCCGGAGGGCGGCAAGCTGCTGGGCCTGGTGGCGACCGATGCCTCGGTTAGGG
ACGCTCCGTTTGTGCTGAGCGGGGCCGACCGCACGATGGGCCCGTTGGGGCTGGCCCGGGACACC
GTGCCTGATCCCAGTGTGGCAGGAGGCAGAGGTGGAGACGTTGGAAACCTTGAAGGTGGAAACGT
TCAGGGTGGAAATATCCAAGGTGGAAACATTCAGGGTGGTCAGAT
Right flanking sequence: Indices 123258 -- 123757
GACTTCCACCGCCAACAAATCGACCCGGCGTTGGCGCTGACAGGCACCATGGGCCCGTTGGGCCT
GGCCCGCGACACCGTGCCCGACCCCAGTGTGGCGTCGCTGCCCGATACTCCGTCCCGTAAGCCCG
CGGCCGAGTCGCCGTCGTTCTCGGTGGACCGCGAGAAGGTCAAGAGCCGGATGGGCGCTGCCGGT
GTGGGAGCCGGTGTGGGTGCTGGTGTAGGTGCCGCTGGCGCTGCCATTGCTCACGCGTTTGGCTC
CGGTAAGGACGAAGGCGGCGAGTTTGACCAGGGTGGTGTTGGTAAGCTGGTGAACCAGGGTGGTT
TAGCCCAAGAGCCCGTCCACCACCAGGGTAATCCATTCAACCCTGGCCAGGCGGTCCAATCCAAC
CAGCAGTCCAACCAGCCTCAGTCCAACCAGCCTCAGTCTAACCAGCCTCAGTCCAACCAGACCCA
GTCCAACCAGCCTGGTCTTTCTACCCAAACCCAGCCTCAGGCTGC
Found at i:123214 original size:27 final size:27
Alignment explanation
Indices: 123182--123257 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
123172 ACATTCAGGG
*
123182 TGGTCAGATTGGTCAAACTGGTCAAAC
1 TGGTCAGATTGGTCAACCTGGTCAAAC
*
123209 TGGTCAGATTGGTCAACCTGGTCAATC
1 TGGTCAGATTGGTCAACCTGGTCAAAC
*
123236 TGGCCA-ATCTGGTCAACCTGGT
1 TGGTCAGAT-TGGTCAACCTGGT
123258 GACTTCCACC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (27 bp):
TGGTCAGATTGGTCAACCTGGTCAAAC
Left flanking sequence: Indices 122682 -- 123181
GTGCGCGGGCCCGCTCGCGACGCCGGCCACGTCCGCCAGCTGCTGCTGGGCCTGAACCGCGCGGT
GTTCCCCACCGAGCACGGCAACGACCGCTCGGGCGAGCGGGACTTGGCGCTGGTGCGGGACCACG
ACCCGGGCCGCCACCTCCAGGGCGCGGTGGTGAACGCCACGCCGGCGTTGAACCCGGAGCACGCC
GACCTGGACGACACGCTCGACCAGCGGCAGTTGGCGTCGCTGGCGCCTGGGCCGCTGGCGCTAGC
CGGGAGCCCGCTCGGCCGCAACCCGGAGGGCGGCAAGCTGCTGGGCCTGGTGGCGACCGATGCCT
CGGTTAGGGACGCTCCGTTTGTGCTGAGCGGGGCCGACCGCACGATGGGCCCGTTGGGGCTGGCC
CGGGACACCGTGCCTGATCCCAGTGTGGCAGGAGGCAGAGGTGGAGACGTTGGAAACCTTGAAGG
TGGAAACGTTCAGGGTGGAAATATCCAAGGTGGAAACATTCAGGG
Right flanking sequence: Indices 123258 -- 123757
GACTTCCACCGCCAACAAATCGACCCGGCGTTGGCGCTGACAGGCACCATGGGCCCGTTGGGCCT
GGCCCGCGACACCGTGCCCGACCCCAGTGTGGCGTCGCTGCCCGATACTCCGTCCCGTAAGCCCG
CGGCCGAGTCGCCGTCGTTCTCGGTGGACCGCGAGAAGGTCAAGAGCCGGATGGGCGCTGCCGGT
GTGGGAGCCGGTGTGGGTGCTGGTGTAGGTGCCGCTGGCGCTGCCATTGCTCACGCGTTTGGCTC
CGGTAAGGACGAAGGCGGCGAGTTTGACCAGGGTGGTGTTGGTAAGCTGGTGAACCAGGGTGGTT
TAGCCCAAGAGCCCGTCCACCACCAGGGTAATCCATTCAACCCTGGCCAGGCGGTCCAATCCAAC
CAGCAGTCCAACCAGCCTCAGTCCAACCAGCCTCAGTCTAACCAGCCTCAGTCCAACCAGACCCA
GTCCAACCAGCCTGGTCTTTCTACCCAAACCCAGCCTCAGGCTGC
Found at i:123477 original size:12 final size:12
Alignment explanation
Indices: 123446--123486 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
123436 GGATGGGCGC
123446 TGCCGGTGTGGG
1 TGCCGGTGTGGG
*
123458 AGCCGGTGTGGG
1 TGCCGGTGTGGG
* *
123470 TGCTGGTGTAGG
1 TGCCGGTGTGGG
123482 TGCCG
1 TGCCG
123487 CTGGCGCTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.17, G:0.54, T:0.24
Consensus pattern (12 bp):
TGCCGGTGTGGG
Left flanking sequence: Indices 122946 -- 123445
AGCCCGCTCGGCCGCAACCCGGAGGGCGGCAAGCTGCTGGGCCTGGTGGCGACCGATGCCTCGGT
TAGGGACGCTCCGTTTGTGCTGAGCGGGGCCGACCGCACGATGGGCCCGTTGGGGCTGGCCCGGG
ACACCGTGCCTGATCCCAGTGTGGCAGGAGGCAGAGGTGGAGACGTTGGAAACCTTGAAGGTGGA
AACGTTCAGGGTGGAAATATCCAAGGTGGAAACATTCAGGGTGGTCAGATTGGTCAAACTGGTCA
AACTGGTCAGATTGGTCAACCTGGTCAATCTGGCCAATCTGGTCAACCTGGTGACTTCCACCGCC
AACAAATCGACCCGGCGTTGGCGCTGACAGGCACCATGGGCCCGTTGGGCCTGGCCCGCGACACC
GTGCCCGACCCCAGTGTGGCGTCGCTGCCCGATACTCCGTCCCGTAAGCCCGCGGCCGAGTCGCC
GTCGTTCTCGGTGGACCGCGAGAAGGTCAAGAGCCGGATGGGCGC
Right flanking sequence: Indices 123487 -- 123986
CTGGCGCTGCCATTGCTCACGCGTTTGGCTCCGGTAAGGACGAAGGCGGCGAGTTTGACCAGGGT
GGTGTTGGTAAGCTGGTGAACCAGGGTGGTTTAGCCCAAGAGCCCGTCCACCACCAGGGTAATCC
ATTCAACCCTGGCCAGGCGGTCCAATCCAACCAGCAGTCCAACCAGCCTCAGTCCAACCAGCCTC
AGTCTAACCAGCCTCAGTCCAACCAGACCCAGTCCAACCAGCCTGGTCTTTCTACCCAAACCCAG
CCTCAGGCTGCCTTGGGCGGGGCTCTGGAGGCCGGCCAGGCCAACGCCGACTGGGAACACCCAGA
GCACAACCTCGGCCGCGCCAACACCCGCCTGGTGGACCCGTGGGCCAGCCCGCAGGACATCCCCG
CGGGCACGGGTGCCTCGTCCGCTGGTGTGGCTGGCACTGCCTCACCCGCTGGCACCTCACACCAG
GCTGGCGTGATCGGGCTGCCCAGCCCGTTCTCCGCGCCCACCGCC
Found at i:123671 original size:15 final size:15
Alignment explanation
Indices: 123651--123725 Score: 125
Period size: 15 Copynumber: 5.0 Consensus size: 15
123641 ATCCAACCAG
123651 CAGTCCAACCAGCCT
1 CAGTCCAACCAGCCT
123666 CAGTCCAACCAGCCT
1 CAGTCCAACCAGCCT
*
123681 CAGTCTAACCAGCCT
1 CAGTCCAACCAGCCT
123696 CAGTCCAACCAGACC-
1 CAGTCCAACCAG-CCT
123711 CAGTCCAACCAGCCT
1 CAGTCCAACCAGCCT
123726 GGTCTTTCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
14 2 0.04
15 52 0.93
16 2 0.04
ACGTcount: A:0.28, C:0.45, G:0.13, T:0.13
Consensus pattern (15 bp):
CAGTCCAACCAGCCT
Left flanking sequence: Indices 123151 -- 123650
GTGGAAATATCCAAGGTGGAAACATTCAGGGTGGTCAGATTGGTCAAACTGGTCAAACTGGTCAG
ATTGGTCAACCTGGTCAATCTGGCCAATCTGGTCAACCTGGTGACTTCCACCGCCAACAAATCGA
CCCGGCGTTGGCGCTGACAGGCACCATGGGCCCGTTGGGCCTGGCCCGCGACACCGTGCCCGACC
CCAGTGTGGCGTCGCTGCCCGATACTCCGTCCCGTAAGCCCGCGGCCGAGTCGCCGTCGTTCTCG
GTGGACCGCGAGAAGGTCAAGAGCCGGATGGGCGCTGCCGGTGTGGGAGCCGGTGTGGGTGCTGG
TGTAGGTGCCGCTGGCGCTGCCATTGCTCACGCGTTTGGCTCCGGTAAGGACGAAGGCGGCGAGT
TTGACCAGGGTGGTGTTGGTAAGCTGGTGAACCAGGGTGGTTTAGCCCAAGAGCCCGTCCACCAC
CAGGGTAATCCATTCAACCCTGGCCAGGCGGTCCAATCCAACCAG
Right flanking sequence: Indices 123726 -- 124225
GGTCTTTCTACCCAAACCCAGCCTCAGGCTGCCTTGGGCGGGGCTCTGGAGGCCGGCCAGGCCAA
CGCCGACTGGGAACACCCAGAGCACAACCTCGGCCGCGCCAACACCCGCCTGGTGGACCCGTGGG
CCAGCCCGCAGGACATCCCCGCGGGCACGGGTGCCTCGTCCGCTGGTGTGGCTGGCACTGCCTCA
CCCGCTGGCACCTCACACCAGGCTGGCGTGATCGGGCTGCCCAGCCCGTTCTCCGCGCCCACCGC
CGACTCGGACAAGGCGGTGCGCCCGGCCATCCCAAAGCACACCCCGTCCAACTACGCGGTGGACT
CCGACTCGGACGAGGACACGGACCCGACAGCGCCCCTCACCTTCGGCCGCAACCGCAGCGAGAGC
AAGGGCGGCATCATCGCCGGGTCGCCGCAGGCCAAGGCCAAGGTCGCGGCCGCCGCCGCTGCTGC
CGCCACCGCCACCGCGGCCGCCGCCGCCAAGGCCAAGGCCGACAG
Found at i:124992 original size:12 final size:12
Alignment explanation
Indices: 124975--125013 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
124965 GACGAGGAGT
124975 CCAAGGCTGAGC
1 CCAAGGCTGAGC
* *
124987 CCAAGGCTGGGT
1 CCAAGGCTGAGC
*
124999 CTAAGGCTGAGC
1 CCAAGGCTGAGC
125011 CCA
1 CCA
125014 GTGCCCATGG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.23, C:0.31, G:0.33, T:0.13
Consensus pattern (12 bp):
CCAAGGCTGAGC
Left flanking sequence: Indices 124475 -- 124974
CGGCTCGTTCACCAGTGCGGCCCGCATCGGGCTGATGGGCTCGTTCACCAACGCCGCCCGCCAGA
CGCTGTCCACGTCGTTTGGCAACTTGCTGCGGCGCACGGGCCTGTCTGCGCTGATGGGCGGGATG
GTGGACCTGCTGGGGGCGTTGATCAGCGGGTTGACGCCCATGCTGCCCAAGGAGGACCGCGACGA
GGCCATCGACGAGGAGCCCATCGAGCCGGTGCCCGAGATCATTGGTTTTACTGACGATGGCGAGC
CGGTGCTCAAGGAGGTGCACGACGAGCCCACGGGGTTTGCGTTGCAGTACGACGAGGAGGCCAAC
CGCACGGCGCCGGGCGGGTGTGGGCTTGACCTGATGGTGAGACGCTCGCTGTCGGCCAAGTACCG
TCCCAACCGCGAGCTGTTGGCGTCGATCGGTGGTGGGCTTGTGGCTGGAGGAGCCGCGGGTGCTG
CTGTTGGAGGCTTGGCGGGCAAGCACCGTCTGATCGACGAGGAGT
Right flanking sequence: Indices 125014 -- 125513
GTGCCCATGGGTCCAAGGCCCAGGCGGACCAGCAGGCCCAGGCTGACCAGCAGGCACGCCAGGCC
GCGCTTGGCGAGTCGGCGTTTGTGCCTCCGGGCGGCGCCACCTCGGCTGCCGACGTGGTATCCCC
ACGAGGCTCGGTGTCCACCGACCTCTACCACCAGAACCCGCGGGAGATCCTGGCCGAGCAGAAGA
AGAAGAACCGCGAGTCGAACGCGCTCGACTACGCGGGCGTGGACTTCAGCCGCGGCAACCCCAGC
ACCACGTCGGTGGTGTCGGACATCGACGCCGGCGCCAGCCCGGTGATTGCCGACGCCAGCGAGGC
CAAGTTCTACCTGGGCGCCAAGCTCGCCGGCCCCTCGGACAGCCAGGACCTGGCCAGCCGCGGGG
TGGGCCGCGAGGCCAACCAGCAGGGCCGCGAGCTTCTCCACAACTACAAGGACGACGAGGACCCC
GAGCGGATGTTTGGCAAGGACACCGCGGGGCCCGTGGGCGCTGCT
Found at i:125052 original size:18 final size:18
Alignment explanation
Indices: 125029--125068 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
125019 CATGGGTCCA
125029 AGGCCCAGGCGGACCAGC
1 AGGCCCAGGCGGACCAGC
*
125047 AGGCCCAGGCTGACCAGC
1 AGGCCCAGGCGGACCAGC
125065 AGGC
1 AGGC
125069 ACGCCAGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.38, T:0.03
Consensus pattern (18 bp):
AGGCCCAGGCGGACCAGC
Left flanking sequence: Indices 124529 -- 125028
CGCCCGCCAGACGCTGTCCACGTCGTTTGGCAACTTGCTGCGGCGCACGGGCCTGTCTGCGCTGA
TGGGCGGGATGGTGGACCTGCTGGGGGCGTTGATCAGCGGGTTGACGCCCATGCTGCCCAAGGAG
GACCGCGACGAGGCCATCGACGAGGAGCCCATCGAGCCGGTGCCCGAGATCATTGGTTTTACTGA
CGATGGCGAGCCGGTGCTCAAGGAGGTGCACGACGAGCCCACGGGGTTTGCGTTGCAGTACGACG
AGGAGGCCAACCGCACGGCGCCGGGCGGGTGTGGGCTTGACCTGATGGTGAGACGCTCGCTGTCG
GCCAAGTACCGTCCCAACCGCGAGCTGTTGGCGTCGATCGGTGGTGGGCTTGTGGCTGGAGGAGC
CGCGGGTGCTGCTGTTGGAGGCTTGGCGGGCAAGCACCGTCTGATCGACGAGGAGTCCAAGGCTG
AGCCCAAGGCTGGGTCTAAGGCTGAGCCCAGTGCCCATGGGTCCA
Right flanking sequence: Indices 125069 -- 125568
ACGCCAGGCCGCGCTTGGCGAGTCGGCGTTTGTGCCTCCGGGCGGCGCCACCTCGGCTGCCGACG
TGGTATCCCCACGAGGCTCGGTGTCCACCGACCTCTACCACCAGAACCCGCGGGAGATCCTGGCC
GAGCAGAAGAAGAAGAACCGCGAGTCGAACGCGCTCGACTACGCGGGCGTGGACTTCAGCCGCGG
CAACCCCAGCACCACGTCGGTGGTGTCGGACATCGACGCCGGCGCCAGCCCGGTGATTGCCGACG
CCAGCGAGGCCAAGTTCTACCTGGGCGCCAAGCTCGCCGGCCCCTCGGACAGCCAGGACCTGGCC
AGCCGCGGGGTGGGCCGCGAGGCCAACCAGCAGGGCCGCGAGCTTCTCCACAACTACAAGGACGA
CGAGGACCCCGAGCGGATGTTTGGCAAGGACACCGCGGGGCCCGTGGGCGCTGCTGCCTTGGGAG
CGGGTGGAGCCGCGGCACTTGCCGCTGGCGTAGCCCACCACCGCC
Found at i:125871 original size:18 final size:18
Alignment explanation
Indices: 125844--125889 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
125834 CAAGCATGAC
125844 AAGCACGGTCATGAAGAA
1 AAGCACGGTCATGAAGAA
* * *
125862 AAGCATGGTCATGACGAG
1 AAGCACGGTCATGAAGAA
125880 AAGCACGGTC
1 AAGCACGGTC
125890 TCGGTGAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.37, C:0.20, G:0.30, T:0.13
Consensus pattern (18 bp):
AAGCACGGTCATGAAGAA
Left flanking sequence: Indices 125344 -- 125843
TCTACCTGGGCGCCAAGCTCGCCGGCCCCTCGGACAGCCAGGACCTGGCCAGCCGCGGGGTGGGC
CGCGAGGCCAACCAGCAGGGCCGCGAGCTTCTCCACAACTACAAGGACGACGAGGACCCCGAGCG
GATGTTTGGCAAGGACACCGCGGGGCCCGTGGGCGCTGCTGCCTTGGGAGCGGGTGGAGCCGCGG
CACTTGCCGCTGGCGTAGCCCACCACCGCCACCAGGCGCAAACGGAGGCCCAGCCGCCGCGGCCG
CTGGAGCAGGAGGTGGAGTACGCCCGCCAGCAGGCGCAGCGGGTGGACGCCCAGCAGCACGCGCA
GGCCCGGTCGGCCAACCAGCAGGGCGTGGACATTCTCCTGGGCTACAGTGGCTACCAGCCGCCCA
TGGAGGAGATGCGCCAGGTGCGGGACGACCACCAGGCGTGGGAGGAGAAGATCCACGGCGAGGGG
CCCAAGCACCACTTGTTCCACCATGAGAAGAAAGACAAGCATGAC
Right flanking sequence: Indices 125890 -- 126389
TCGGTGAGAAGCTCGGTCGCGGTGACCATGGTAACCACGGTGACCACGGTGGCCACGGTGGCCAT
GGCAACTTGTCTCAGTCTGAGCACCAGTCTGGTTCTCGCGAGCCGTACCCCACCCAGGCCGAGTC
CAAGTCCGGCTTCTCGGAGCAGACCCTCCCCGACTACGCGGTGGGGGCGTCGCCTCAGCAGCTGC
GGGAGTTGGCGGGCGACCACAAACGCGACGCCAAGCCCGCCTTCACCAAGGACACGCTTCCGGAC
TACGCCGTGGGCCAGGAGCCCGGCCAGCTGGGCGGCTACGACTCGCACCCGGTGTCCAAGTCGGC
ACTGGACCGCGAGCCCTTGCACGACCAGGACTTGCAGAGCCGCGAGATGGCCGCCACGCCGTCGG
AGCAGGAGGCTCTGCGGCAGTTCAGCAGCCAGTTGAGCCAGGTGATGCGCGACCACCGTGCCTAC
GAGGGCGACGACCACTCGTACTCGGACTCGCACTACTCGGACGAG
Found at i:125898 original size:18 final size:18
Alignment explanation
Indices: 125877--125914 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
125867 TGGTCATGAC
*
125877 GAGAAGCACGGTCTCGGT
1 GAGAAGCACGGTCGCGGT
*
125895 GAGAAGCTCGGTCGCGGT
1 GAGAAGCACGGTCGCGGT
125913 GA
1 GA
125915 CCATGGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.42, T:0.16
Consensus pattern (18 bp):
GAGAAGCACGGTCGCGGT
Left flanking sequence: Indices 125377 -- 125876
ACAGCCAGGACCTGGCCAGCCGCGGGGTGGGCCGCGAGGCCAACCAGCAGGGCCGCGAGCTTCTC
CACAACTACAAGGACGACGAGGACCCCGAGCGGATGTTTGGCAAGGACACCGCGGGGCCCGTGGG
CGCTGCTGCCTTGGGAGCGGGTGGAGCCGCGGCACTTGCCGCTGGCGTAGCCCACCACCGCCACC
AGGCGCAAACGGAGGCCCAGCCGCCGCGGCCGCTGGAGCAGGAGGTGGAGTACGCCCGCCAGCAG
GCGCAGCGGGTGGACGCCCAGCAGCACGCGCAGGCCCGGTCGGCCAACCAGCAGGGCGTGGACAT
TCTCCTGGGCTACAGTGGCTACCAGCCGCCCATGGAGGAGATGCGCCAGGTGCGGGACGACCACC
AGGCGTGGGAGGAGAAGATCCACGGCGAGGGGCCCAAGCACCACTTGTTCCACCATGAGAAGAAA
GACAAGCATGACAAGCACGGTCATGAAGAAAAGCATGGTCATGAC
Right flanking sequence: Indices 125915 -- 126414
CCATGGTAACCACGGTGACCACGGTGGCCACGGTGGCCATGGCAACTTGTCTCAGTCTGAGCACC
AGTCTGGTTCTCGCGAGCCGTACCCCACCCAGGCCGAGTCCAAGTCCGGCTTCTCGGAGCAGACC
CTCCCCGACTACGCGGTGGGGGCGTCGCCTCAGCAGCTGCGGGAGTTGGCGGGCGACCACAAACG
CGACGCCAAGCCCGCCTTCACCAAGGACACGCTTCCGGACTACGCCGTGGGCCAGGAGCCCGGCC
AGCTGGGCGGCTACGACTCGCACCCGGTGTCCAAGTCGGCACTGGACCGCGAGCCCTTGCACGAC
CAGGACTTGCAGAGCCGCGAGATGGCCGCCACGCCGTCGGAGCAGGAGGCTCTGCGGCAGTTCAG
CAGCCAGTTGAGCCAGGTGATGCGCGACCACCGTGCCTACGAGGGCGACGACCACTCGTACTCGG
ACTCGCACTACTCGGACGAGGGCAACTCGCACTCGGACAAGGGGG
Found at i:125930 original size:18 final size:18
Alignment explanation
Indices: 125909--125956 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
125899 AGCTCGGTCG
125909 CGGTGACCATGGTAACCA
1 CGGTGACCATGGTAACCA
* **
125927 CGGTGACCACGGTGGCCA
1 CGGTGACCATGGTAACCA
*
125945 CGGTGGCCATGG
1 CGGTGACCATGG
125957 CAACTTGTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.19, C:0.29, G:0.38, T:0.15
Consensus pattern (18 bp):
CGGTGACCATGGTAACCA
Left flanking sequence: Indices 125409 -- 125908
CGCGAGGCCAACCAGCAGGGCCGCGAGCTTCTCCACAACTACAAGGACGACGAGGACCCCGAGCG
GATGTTTGGCAAGGACACCGCGGGGCCCGTGGGCGCTGCTGCCTTGGGAGCGGGTGGAGCCGCGG
CACTTGCCGCTGGCGTAGCCCACCACCGCCACCAGGCGCAAACGGAGGCCCAGCCGCCGCGGCCG
CTGGAGCAGGAGGTGGAGTACGCCCGCCAGCAGGCGCAGCGGGTGGACGCCCAGCAGCACGCGCA
GGCCCGGTCGGCCAACCAGCAGGGCGTGGACATTCTCCTGGGCTACAGTGGCTACCAGCCGCCCA
TGGAGGAGATGCGCCAGGTGCGGGACGACCACCAGGCGTGGGAGGAGAAGATCCACGGCGAGGGG
CCCAAGCACCACTTGTTCCACCATGAGAAGAAAGACAAGCATGACAAGCACGGTCATGAAGAAAA
GCATGGTCATGACGAGAAGCACGGTCTCGGTGAGAAGCTCGGTCG
Right flanking sequence: Indices 125957 -- 126456
CAACTTGTCTCAGTCTGAGCACCAGTCTGGTTCTCGCGAGCCGTACCCCACCCAGGCCGAGTCCA
AGTCCGGCTTCTCGGAGCAGACCCTCCCCGACTACGCGGTGGGGGCGTCGCCTCAGCAGCTGCGG
GAGTTGGCGGGCGACCACAAACGCGACGCCAAGCCCGCCTTCACCAAGGACACGCTTCCGGACTA
CGCCGTGGGCCAGGAGCCCGGCCAGCTGGGCGGCTACGACTCGCACCCGGTGTCCAAGTCGGCAC
TGGACCGCGAGCCCTTGCACGACCAGGACTTGCAGAGCCGCGAGATGGCCGCCACGCCGTCGGAG
CAGGAGGCTCTGCGGCAGTTCAGCAGCCAGTTGAGCCAGGTGATGCGCGACCACCGTGCCTACGA
GGGCGACGACCACTCGTACTCGGACTCGCACTACTCGGACGAGGGCAACTCGCACTCGGACAAGG
GGGTGATGGCTGGTCTTGCTGGTGCTGGAGCCGCTGTAGGTGCCG
Found at i:125935 original size:9 final size:9
Alignment explanation
Indices: 125909--125949 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
125899 AGCTCGGTCG
125909 CGGTGACCA
1 CGGTGACCA
* *
125918 TGGTAACCA
1 CGGTGACCA
125927 CGGTGACCA
1 CGGTGACCA
*
125936 CGGTGGCCA
1 CGGTGACCA
125945 CGGTG
1 CGGTG
125950 GCCATGGCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.20, C:0.29, G:0.37, T:0.15
Consensus pattern (9 bp):
CGGTGACCA
Left flanking sequence: Indices 125409 -- 125908
CGCGAGGCCAACCAGCAGGGCCGCGAGCTTCTCCACAACTACAAGGACGACGAGGACCCCGAGCG
GATGTTTGGCAAGGACACCGCGGGGCCCGTGGGCGCTGCTGCCTTGGGAGCGGGTGGAGCCGCGG
CACTTGCCGCTGGCGTAGCCCACCACCGCCACCAGGCGCAAACGGAGGCCCAGCCGCCGCGGCCG
CTGGAGCAGGAGGTGGAGTACGCCCGCCAGCAGGCGCAGCGGGTGGACGCCCAGCAGCACGCGCA
GGCCCGGTCGGCCAACCAGCAGGGCGTGGACATTCTCCTGGGCTACAGTGGCTACCAGCCGCCCA
TGGAGGAGATGCGCCAGGTGCGGGACGACCACCAGGCGTGGGAGGAGAAGATCCACGGCGAGGGG
CCCAAGCACCACTTGTTCCACCATGAGAAGAAAGACAAGCATGACAAGCACGGTCATGAAGAAAA
GCATGGTCATGACGAGAAGCACGGTCTCGGTGAGAAGCTCGGTCG
Right flanking sequence: Indices 125950 -- 126449
GCCATGGCAACTTGTCTCAGTCTGAGCACCAGTCTGGTTCTCGCGAGCCGTACCCCACCCAGGCC
GAGTCCAAGTCCGGCTTCTCGGAGCAGACCCTCCCCGACTACGCGGTGGGGGCGTCGCCTCAGCA
GCTGCGGGAGTTGGCGGGCGACCACAAACGCGACGCCAAGCCCGCCTTCACCAAGGACACGCTTC
CGGACTACGCCGTGGGCCAGGAGCCCGGCCAGCTGGGCGGCTACGACTCGCACCCGGTGTCCAAG
TCGGCACTGGACCGCGAGCCCTTGCACGACCAGGACTTGCAGAGCCGCGAGATGGCCGCCACGCC
GTCGGAGCAGGAGGCTCTGCGGCAGTTCAGCAGCCAGTTGAGCCAGGTGATGCGCGACCACCGTG
CCTACGAGGGCGACGACCACTCGTACTCGGACTCGCACTACTCGGACGAGGGCAACTCGCACTCG
GACAAGGGGGTGATGGCTGGTCTTGCTGGTGCTGGAGCCGCTGTA
Found at i:125950 original size:9 final size:9
Alignment explanation
Indices: 125924--125953 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
125914 ACCATGGTAA
*
125924 CCACGGTGA
1 CCACGGTGG
125933 CCACGGTGG
1 CCACGGTGG
125942 CCACGGTGG
1 CCACGGTGG
125951 CCA
1 CCA
125954 TGGCAACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.17, C:0.37, G:0.37, T:0.10
Consensus pattern (9 bp):
CCACGGTGG
Left flanking sequence: Indices 125424 -- 125923
CAGGGCCGCGAGCTTCTCCACAACTACAAGGACGACGAGGACCCCGAGCGGATGTTTGGCAAGGA
CACCGCGGGGCCCGTGGGCGCTGCTGCCTTGGGAGCGGGTGGAGCCGCGGCACTTGCCGCTGGCG
TAGCCCACCACCGCCACCAGGCGCAAACGGAGGCCCAGCCGCCGCGGCCGCTGGAGCAGGAGGTG
GAGTACGCCCGCCAGCAGGCGCAGCGGGTGGACGCCCAGCAGCACGCGCAGGCCCGGTCGGCCAA
CCAGCAGGGCGTGGACATTCTCCTGGGCTACAGTGGCTACCAGCCGCCCATGGAGGAGATGCGCC
AGGTGCGGGACGACCACCAGGCGTGGGAGGAGAAGATCCACGGCGAGGGGCCCAAGCACCACTTG
TTCCACCATGAGAAGAAAGACAAGCATGACAAGCACGGTCATGAAGAAAAGCATGGTCATGACGA
GAAGCACGGTCTCGGTGAGAAGCTCGGTCGCGGTGACCATGGTAA
Right flanking sequence: Indices 125954 -- 126453
TGGCAACTTGTCTCAGTCTGAGCACCAGTCTGGTTCTCGCGAGCCGTACCCCACCCAGGCCGAGT
CCAAGTCCGGCTTCTCGGAGCAGACCCTCCCCGACTACGCGGTGGGGGCGTCGCCTCAGCAGCTG
CGGGAGTTGGCGGGCGACCACAAACGCGACGCCAAGCCCGCCTTCACCAAGGACACGCTTCCGGA
CTACGCCGTGGGCCAGGAGCCCGGCCAGCTGGGCGGCTACGACTCGCACCCGGTGTCCAAGTCGG
CACTGGACCGCGAGCCCTTGCACGACCAGGACTTGCAGAGCCGCGAGATGGCCGCCACGCCGTCG
GAGCAGGAGGCTCTGCGGCAGTTCAGCAGCCAGTTGAGCCAGGTGATGCGCGACCACCGTGCCTA
CGAGGGCGACGACCACTCGTACTCGGACTCGCACTACTCGGACGAGGGCAACTCGCACTCGGACA
AGGGGGTGATGGCTGGTCTTGCTGGTGCTGGAGCCGCTGTAGGTG
Found at i:126458 original size:12 final size:12
Alignment explanation
Indices: 126441--126466 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
126431 TGGTGCTGGA
126441 GCCGCTGTAGGT
1 GCCGCTGTAGGT
126453 GCCGCTGTAGGT
1 GCCGCTGTAGGT
126465 GC
1 GC
126467 TGCCATTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.42, T:0.23
Consensus pattern (12 bp):
GCCGCTGTAGGT
Left flanking sequence: Indices 125941 -- 126440
GCCACGGTGGCCATGGCAACTTGTCTCAGTCTGAGCACCAGTCTGGTTCTCGCGAGCCGTACCCC
ACCCAGGCCGAGTCCAAGTCCGGCTTCTCGGAGCAGACCCTCCCCGACTACGCGGTGGGGGCGTC
GCCTCAGCAGCTGCGGGAGTTGGCGGGCGACCACAAACGCGACGCCAAGCCCGCCTTCACCAAGG
ACACGCTTCCGGACTACGCCGTGGGCCAGGAGCCCGGCCAGCTGGGCGGCTACGACTCGCACCCG
GTGTCCAAGTCGGCACTGGACCGCGAGCCCTTGCACGACCAGGACTTGCAGAGCCGCGAGATGGC
CGCCACGCCGTCGGAGCAGGAGGCTCTGCGGCAGTTCAGCAGCCAGTTGAGCCAGGTGATGCGCG
ACCACCGTGCCTACGAGGGCGACGACCACTCGTACTCGGACTCGCACTACTCGGACGAGGGCAAC
TCGCACTCGGACAAGGGGGTGATGGCTGGTCTTGCTGGTGCTGGA
Right flanking sequence: Indices 126467 -- 126966
TGCCATTGGTCTGAACCGCAAGGGCGACGACCAGGGTCAGGGCCAAAGAGGTGGTCAACGCAGCT
TGGGCACTGAAGACCGCAGCTTGGGCCAAGATCACAACTTGGGCCAAGATCACGGCTTGGGCTCT
GGTCAAGACCGCGGTTCCGGCCAATCCCGTGGCTTGGGTTCTGGCCAAAACCGTGGCTTGGACCC
CCAGTCCGACCACACCCGGTCGGGCTTCGGGCTGGCCACCGACTCCTCGGACGGGGTCCACCCGG
CCTCGCTCAAGGGGAAGCCGTCGCCGTTGGAGGCCGTCGTCGAAAAGTACGCCGAGCCCTCGCGC
ATGCACACCGACGACGACGCCTTCACCTCGGCCAACACCTCGTTGGCCCACCCCGACAGCACCCC
GCTCGTTGCCGACACGTCGATGGACCGCTACCTGGTGGACGACTCCCTCGACGACGACCACGCGG
ACACTGCCGACTTTGCTGACGCCTCCGGGACCGGACACGAGTCCA
Found at i:126590 original size:18 final size:18
Alignment explanation
Indices: 126548--126593 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
126538 CTGAAGACCG
126548 CAGCTTGGGCCAAGATCA
1 CAGCTTGGGCCAAGATCA
*
126566 CAACTTGGGCCAAGATCA
1 CAGCTTGGGCCAAGATCA
*
126584 CGGCTTGGGC
1 CAGCTTGGGC
126594 TCTGGTCAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.17
Consensus pattern (18 bp):
CAGCTTGGGCCAAGATCA
Left flanking sequence: Indices 126048 -- 126547
CCCGACTACGCGGTGGGGGCGTCGCCTCAGCAGCTGCGGGAGTTGGCGGGCGACCACAAACGCGA
CGCCAAGCCCGCCTTCACCAAGGACACGCTTCCGGACTACGCCGTGGGCCAGGAGCCCGGCCAGC
TGGGCGGCTACGACTCGCACCCGGTGTCCAAGTCGGCACTGGACCGCGAGCCCTTGCACGACCAG
GACTTGCAGAGCCGCGAGATGGCCGCCACGCCGTCGGAGCAGGAGGCTCTGCGGCAGTTCAGCAG
CCAGTTGAGCCAGGTGATGCGCGACCACCGTGCCTACGAGGGCGACGACCACTCGTACTCGGACT
CGCACTACTCGGACGAGGGCAACTCGCACTCGGACAAGGGGGTGATGGCTGGTCTTGCTGGTGCT
GGAGCCGCTGTAGGTGCCGCTGTAGGTGCTGCCATTGGTCTGAACCGCAAGGGCGACGACCAGGG
TCAGGGCCAAAGAGGTGGTCAACGCAGCTTGGGCACTGAAGACCG
Right flanking sequence: Indices 126594 -- 127093
TCTGGTCAAGACCGCGGTTCCGGCCAATCCCGTGGCTTGGGTTCTGGCCAAAACCGTGGCTTGGA
CCCCCAGTCCGACCACACCCGGTCGGGCTTCGGGCTGGCCACCGACTCCTCGGACGGGGTCCACC
CGGCCTCGCTCAAGGGGAAGCCGTCGCCGTTGGAGGCCGTCGTCGAAAAGTACGCCGAGCCCTCG
CGCATGCACACCGACGACGACGCCTTCACCTCGGCCAACACCTCGTTGGCCCACCCCGACAGCAC
CCCGCTCGTTGCCGACACGTCGATGGACCGCTACCTGGTGGACGACTCCCTCGACGACGACCACG
CGGACACTGCCGACTTTGCTGACGCCTCCGGGACCGGACACGAGTCCAGTCCCGACCAGCATGCC
TACGCCGACGCCTCGGGCGCAGCCACGGCGCCAGCCGACGACCTTCGTGTCCGCCGCGGTCGCGG
GGACCCCTCGCGGGCACGGAACTTGGGCGGTGGCGCTGCCGCTGC
Found at i:126642 original size:24 final size:24
Alignment explanation
Indices: 126609--126657 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
126599 TCAAGACCGC
**
126609 GGTTCCGGCCAATCCCGTGGCTTG
1 GGTTCCGGCCAAAACCGTGGCTTG
*
126633 GGTTCTGGCCAAAACCGTGGCTTG
1 GGTTCCGGCCAAAACCGTGGCTTG
126657 G
1 G
126658 ACCCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.12, C:0.29, G:0.35, T:0.24
Consensus pattern (24 bp):
GGTTCCGGCCAAAACCGTGGCTTG
Left flanking sequence: Indices 126109 -- 126608
GCGACGCCAAGCCCGCCTTCACCAAGGACACGCTTCCGGACTACGCCGTGGGCCAGGAGCCCGGC
CAGCTGGGCGGCTACGACTCGCACCCGGTGTCCAAGTCGGCACTGGACCGCGAGCCCTTGCACGA
CCAGGACTTGCAGAGCCGCGAGATGGCCGCCACGCCGTCGGAGCAGGAGGCTCTGCGGCAGTTCA
GCAGCCAGTTGAGCCAGGTGATGCGCGACCACCGTGCCTACGAGGGCGACGACCACTCGTACTCG
GACTCGCACTACTCGGACGAGGGCAACTCGCACTCGGACAAGGGGGTGATGGCTGGTCTTGCTGG
TGCTGGAGCCGCTGTAGGTGCCGCTGTAGGTGCTGCCATTGGTCTGAACCGCAAGGGCGACGACC
AGGGTCAGGGCCAAAGAGGTGGTCAACGCAGCTTGGGCACTGAAGACCGCAGCTTGGGCCAAGAT
CACAACTTGGGCCAAGATCACGGCTTGGGCTCTGGTCAAGACCGC
Right flanking sequence: Indices 126658 -- 127157
ACCCCCAGTCCGACCACACCCGGTCGGGCTTCGGGCTGGCCACCGACTCCTCGGACGGGGTCCAC
CCGGCCTCGCTCAAGGGGAAGCCGTCGCCGTTGGAGGCCGTCGTCGAAAAGTACGCCGAGCCCTC
GCGCATGCACACCGACGACGACGCCTTCACCTCGGCCAACACCTCGTTGGCCCACCCCGACAGCA
CCCCGCTCGTTGCCGACACGTCGATGGACCGCTACCTGGTGGACGACTCCCTCGACGACGACCAC
GCGGACACTGCCGACTTTGCTGACGCCTCCGGGACCGGACACGAGTCCAGTCCCGACCAGCATGC
CTACGCCGACGCCTCGGGCGCAGCCACGGCGCCAGCCGACGACCTTCGTGTCCGCCGCGGTCGCG
GGGACCCCTCGCGGGCACGGAACTTGGGCGGTGGCGCTGCCGCTGCTCTTGCGGGCTCGGCCATC
GTAGGTGCCCACTTTGGCAACGCTCCTGGATCCGACAGCCAGGAG
Found at i:127470 original size:22 final size:19
Alignment explanation
Indices: 127449--127487 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
127439 TTTGTGTGAA
*
127449 TGAA-TTAGGTGGTGTGGG
1 TGAATTTAGGTGGTGCGGG
127467 TGAATTTAGGTGGTGCGGG
1 TGAATTTAGGTGGTGCGGG
127486 TG
1 TG
127488 GTTTGGGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.15, C:0.03, G:0.49, T:0.33
Consensus pattern (19 bp):
TGAATTTAGGTGGTGCGGG
Left flanking sequence: Indices 126949 -- 127448
GGACCGGACACGAGTCCAGTCCCGACCAGCATGCCTACGCCGACGCCTCGGGCGCAGCCACGGCG
CCAGCCGACGACCTTCGTGTCCGCCGCGGTCGCGGGGACCCCTCGCGGGCACGGAACTTGGGCGG
TGGCGCTGCCGCTGCTCTTGCGGGCTCGGCCATCGTAGGTGCCCACTTTGGCAACGCTCCTGGAT
CCGACAGCCAGGAGCGGTACGGAGACCGGGTGGATGTGCTTCCGGAGGACTTTGACGAGCCCGAG
CTCTCGCCCGAGCAGCTCGCCGAGCGCCGCAAGCTCATCAACCAGCGTGCTGCGGCCGCTGGCGC
CACCATCGACGGCTTGAACGACAACAAGCCGCGGAAGAAGGCACCGGTGCCCCAGGCGTTGCACG
CCAACGCCAAGCCCGGATCGTATCTCCACCACTGTCAGCAGGTGAAGGTGCCTGGGTTCTGGGAC
GATAACTAGGTATTTTTGTATAATAGAATTGATGTTTTGTGTGAA
Right flanking sequence: Indices 127488 -- 127987
GTTTGGGTGGTGGCTGTGGTCTCGCGGTTAAGGTTGATTCGTCTGAGTCGATCTTGAACCACAGA
GACTGACCAACCACAAACAAAATAGCGCTTTTTCAACATGTATATATGTTTATACGTATACATCT
TTGGGGTTCTCCATGCCTTTTGATCTCTATGACTTGATTGCTCGCGTTGGCCACCTTGCCCGGTT
CGTCTACATTTGTGTTTTCGTGCTTCGTGTGGCCAGAGATGAACGGAAGATGAATGCCTTAGCCA
CCTTGCGCAAAGGGTCGTGGGAAGGGTCGTGGGAGGAGTTGTTTGCCAGCGCTCCCAAACCGCTG
GCGAAGGACGCCCGGATGACTGCCCGGTTGTCTCAGATCCTACAAAATGAGGGATGGTCTTCTGA
GAACGCCAATGGCTTCGCCCGTCTCGTGACGCTAATGCCAGAGCCAAAAGGTATGTCCAAGAAGA
CACCCAAAAAGGGGCTGGCCCGTCCTCGTATCAGGCGTATAACTT
Found at i:127774 original size:12 final size:12
Alignment explanation
Indices: 127757--127781 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
127747 ACCTTGCGCA
127757 AAGGGTCGTGGG
1 AAGGGTCGTGGG
127769 AAGGGTCGTGGG
1 AAGGGTCGTGGG
127781 A
1 A
127782 GGAGTTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.56, T:0.16
Consensus pattern (12 bp):
AAGGGTCGTGGG
Left flanking sequence: Indices 127257 -- 127756
GCTGCGGCCGCTGGCGCCACCATCGACGGCTTGAACGACAACAAGCCGCGGAAGAAGGCACCGGT
GCCCCAGGCGTTGCACGCCAACGCCAAGCCCGGATCGTATCTCCACCACTGTCAGCAGGTGAAGG
TGCCTGGGTTCTGGGACGATAACTAGGTATTTTTGTATAATAGAATTGATGTTTTGTGTGAATGA
ATTAGGTGGTGTGGGTGAATTTAGGTGGTGCGGGTGGTTTGGGTGGTGGCTGTGGTCTCGCGGTT
AAGGTTGATTCGTCTGAGTCGATCTTGAACCACAGAGACTGACCAACCACAAACAAAATAGCGCT
TTTTCAACATGTATATATGTTTATACGTATACATCTTTGGGGTTCTCCATGCCTTTTGATCTCTA
TGACTTGATTGCTCGCGTTGGCCACCTTGCCCGGTTCGTCTACATTTGTGTTTTCGTGCTTCGTG
TGGCCAGAGATGAACGGAAGATGAATGCCTTAGCCACCTTGCGCA
Right flanking sequence: Indices 127782 -- 128281
GGAGTTGTTTGCCAGCGCTCCCAAACCGCTGGCGAAGGACGCCCGGATGACTGCCCGGTTGTCTC
AGATCCTACAAAATGAGGGATGGTCTTCTGAGAACGCCAATGGCTTCGCCCGTCTCGTGACGCTA
ATGCCAGAGCCAAAAGGTATGTCCAAGAAGACACCCAAAAAGGGGCTGGCCCGTCCTCGTATCAG
GCGTATAACTTAATTGTTTGGCGAACTATTCGGAACTGCTCCATAGCTATGTCTTTACCTCCTAC
GCTATAAAAAGGAAGTGGTTTTTTTTTGTATCACTGAGTGCCAGCGTCTCTTTATCCAGCTCAAT
TTGAACGAATATGACCAGAGATGAAGTAGATACGATATGCATCATTTGCAGCCAGTTTGTATGCA
CAATACCATTCCAAAATAATACTATAAACAGCTACTATATACAGCTACTATACACAGCTATCACA
CGCAGCTATTATACAAAGCTACTATACACAGCTAAGCACCACTCC
Found at i:128207 original size:13 final size:13
Alignment explanation
Indices: 128191--128270 Score: 90
Period size: 13 Copynumber: 6.2 Consensus size: 13
128181 TCCAAAATAA
*
128191 TACTATAAACAGC
1 TACTATACACAGC
*
128204 TACTATATACAGC
1 TACTATACACAGC
128217 TACTATACACAGC
1 TACTATACACAGC
* *
128230 TA-TCACACGCAGC
1 TACT-ATACACAGC
* *
128243 TATTATACAAAGC
1 TACTATACACAGC
128256 TACTATACACAGC
1 TACTATACACAGC
128269 TA
1 TA
128271 AGCACCACTC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
12 1 0.02
13 54 0.96
14 1 0.02
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.25
Consensus pattern (13 bp):
TACTATACACAGC
Left flanking sequence: Indices 127691 -- 128190
TTTGTGTTTTCGTGCTTCGTGTGGCCAGAGATGAACGGAAGATGAATGCCTTAGCCACCTTGCGC
AAAGGGTCGTGGGAAGGGTCGTGGGAGGAGTTGTTTGCCAGCGCTCCCAAACCGCTGGCGAAGGA
CGCCCGGATGACTGCCCGGTTGTCTCAGATCCTACAAAATGAGGGATGGTCTTCTGAGAACGCCA
ATGGCTTCGCCCGTCTCGTGACGCTAATGCCAGAGCCAAAAGGTATGTCCAAGAAGACACCCAAA
AAGGGGCTGGCCCGTCCTCGTATCAGGCGTATAACTTAATTGTTTGGCGAACTATTCGGAACTGC
TCCATAGCTATGTCTTTACCTCCTACGCTATAAAAAGGAAGTGGTTTTTTTTTGTATCACTGAGT
GCCAGCGTCTCTTTATCCAGCTCAATTTGAACGAATATGACCAGAGATGAAGTAGATACGATATG
CATCATTTGCAGCCAGTTTGTATGCACAATACCATTCCAAAATAA
Right flanking sequence: Indices 128271 -- 128770
AGCACCACTCCGAATTAAACAATATATCGTGCCGTCATAACCCGTACCATCATAACCTACCATCA
TAACCTACCATCATAACCTACCATCAAACCCATACCATCATAACCTACCATCAAACCCATACCAT
CAAACCCATACCACCATAACCTACCATCATACCTACCATCATAACCTATGCATTACCTAATTATA
AAGATTGCGGTCCAATTCACGCAACACGTTGGCCACCGACTGCACCTCCACCTGCATGCCGCGAG
TGGTCAACTTGCCCACCAAGGTCGAAAAGTCCACCTGGCTAAAGTGCTTGTGCCGCGACAACGTC
TTGTAGGCGTCGGCGCACGGGATGTAAAGGCCCTGGGGCCCGTTGACGGGGGCTCCCGGAGTGAG
CGGAGCGGGTGAGCCCGGCCCGCCGGGAGTGCCCATGAGTATGCGATTGGTAGGAGTGCTCGGGT
TGAGCTGGGGAGGCGCTGGCGACGGCTTGGCGCTGGTTTCCTGGG
Found at i:128333 original size:13 final size:13
Alignment explanation
Indices: 128305--128448 Score: 179
Period size: 13 Copynumber: 10.8 Consensus size: 13
128295 TATCGTGCCG
128305 TCATAACCCGTACCA
1 TCATAA-CC-TACCA
128320 TCATAACCTACCA
1 TCATAACCTACCA
128333 TCATAACCTACCA
1 TCATAACCTACCA
128346 TCATAACCTACCA
1 TCATAACCTACCA
128359 TCA-AACCCATACCA
1 TCATAA-CC-TACCA
128373 TCATAACCTACCA
1 TCATAACCTACCA
128386 TCA-AACCCATACCA
1 TCATAA-CC-TACCA
128400 TCA-AACCCATACCA
1 TCATAA-CC-TACCA
*
128414 CCATAACCTACCA
1 TCATAACCTACCA
128427 TCAT-ACCTACCA
1 TCATAACCTACCA
128439 TCATAACCTA
1 TCATAACCTA
128449 TGCATTACCT
Statistics
Matches: 120, Mismatches: 2, Indels: 16
0.87 0.01 0.12
Matches are distributed among these distances:
12 16 0.13
13 59 0.49
14 35 0.29
15 10 0.08
ACGTcount: A:0.39, C:0.40, G:0.01, T:0.20
Consensus pattern (13 bp):
TCATAACCTACCA
Left flanking sequence: Indices 127805 -- 128304
AACCGCTGGCGAAGGACGCCCGGATGACTGCCCGGTTGTCTCAGATCCTACAAAATGAGGGATGG
TCTTCTGAGAACGCCAATGGCTTCGCCCGTCTCGTGACGCTAATGCCAGAGCCAAAAGGTATGTC
CAAGAAGACACCCAAAAAGGGGCTGGCCCGTCCTCGTATCAGGCGTATAACTTAATTGTTTGGCG
AACTATTCGGAACTGCTCCATAGCTATGTCTTTACCTCCTACGCTATAAAAAGGAAGTGGTTTTT
TTTTGTATCACTGAGTGCCAGCGTCTCTTTATCCAGCTCAATTTGAACGAATATGACCAGAGATG
AAGTAGATACGATATGCATCATTTGCAGCCAGTTTGTATGCACAATACCATTCCAAAATAATACT
ATAAACAGCTACTATATACAGCTACTATACACAGCTATCACACGCAGCTATTATACAAAGCTACT
ATACACAGCTAAGCACCACTCCGAATTAAACAATATATCGTGCCG
Right flanking sequence: Indices 128449 -- 128948
TGCATTACCTAATTATAAAGATTGCGGTCCAATTCACGCAACACGTTGGCCACCGACTGCACCTC
CACCTGCATGCCGCGAGTGGTCAACTTGCCCACCAAGGTCGAAAAGTCCACCTGGCTAAAGTGCT
TGTGCCGCGACAACGTCTTGTAGGCGTCGGCGCACGGGATGTAAAGGCCCTGGGGCCCGTTGACG
GGGGCTCCCGGAGTGAGCGGAGCGGGTGAGCCCGGCCCGCCGGGAGTGCCCATGAGTATGCGATT
GGTAGGAGTGCTCGGGTTGAGCTGGGGAGGCGCTGGCGACGGCTTGGCGCTGGTTTCCTGGGCCT
TGGACGCCACGGTGCTGCAGAAAAGCGTCAGCAACGGGTCGGCCTGGCACTGGCCACAGGTTCCC
GGGTTGCCGGTGCACCCCGGCTTGGACTCCTGTGGTTTCGGGGTGGGCTGTTCCAGTGACGTCAC
CAACGGCACCAGGTTTGGTGCCAAGTTTTGGAAGTTCAGGATCTC
Found at i:128379 original size:27 final size:27
Alignment explanation
Indices: 128305--128446 Score: 188
Period size: 27 Copynumber: 5.3 Consensus size: 27
128295 TATCGTGCCG
128305 TCATAACCCGTACCATCATAACCTACCA
1 TCATAACCC-TACCATCATAACCTACCA
128333 TCATAA-CCTACCATCATAACCTACCA
1 TCATAACCCTACCATCATAACCTACCA
128359 TCA-AACCCATACCATCATAACCTACCA
1 TCATAACCC-TACCATCATAACCTACCA
128386 TCA-AACCCATACCATCA-AACCCATACCA
1 TCATAACCC-TACCATCATAA-CC-TACCA
*
128414 CCATAA-CCTACCATCAT-ACCTACCA
1 TCATAACCCTACCATCATAACCTACCA
128439 TCATAACC
1 TCATAACC
128447 TATGCATTAC
Statistics
Matches: 105, Mismatches: 2, Indels: 16
0.85 0.02 0.13
Matches are distributed among these distances:
25 12 0.11
26 28 0.27
27 48 0.46
28 15 0.14
29 2 0.02
ACGTcount: A:0.39, C:0.41, G:0.01, T:0.20
Consensus pattern (27 bp):
TCATAACCCTACCATCATAACCTACCA
Left flanking sequence: Indices 127805 -- 128304
AACCGCTGGCGAAGGACGCCCGGATGACTGCCCGGTTGTCTCAGATCCTACAAAATGAGGGATGG
TCTTCTGAGAACGCCAATGGCTTCGCCCGTCTCGTGACGCTAATGCCAGAGCCAAAAGGTATGTC
CAAGAAGACACCCAAAAAGGGGCTGGCCCGTCCTCGTATCAGGCGTATAACTTAATTGTTTGGCG
AACTATTCGGAACTGCTCCATAGCTATGTCTTTACCTCCTACGCTATAAAAAGGAAGTGGTTTTT
TTTTGTATCACTGAGTGCCAGCGTCTCTTTATCCAGCTCAATTTGAACGAATATGACCAGAGATG
AAGTAGATACGATATGCATCATTTGCAGCCAGTTTGTATGCACAATACCATTCCAAAATAATACT
ATAAACAGCTACTATATACAGCTACTATACACAGCTATCACACGCAGCTATTATACAAAGCTACT
ATACACAGCTAAGCACCACTCCGAATTAAACAATATATCGTGCCG
Right flanking sequence: Indices 128447 -- 128946
TATGCATTACCTAATTATAAAGATTGCGGTCCAATTCACGCAACACGTTGGCCACCGACTGCACC
TCCACCTGCATGCCGCGAGTGGTCAACTTGCCCACCAAGGTCGAAAAGTCCACCTGGCTAAAGTG
CTTGTGCCGCGACAACGTCTTGTAGGCGTCGGCGCACGGGATGTAAAGGCCCTGGGGCCCGTTGA
CGGGGGCTCCCGGAGTGAGCGGAGCGGGTGAGCCCGGCCCGCCGGGAGTGCCCATGAGTATGCGA
TTGGTAGGAGTGCTCGGGTTGAGCTGGGGAGGCGCTGGCGACGGCTTGGCGCTGGTTTCCTGGGC
CTTGGACGCCACGGTGCTGCAGAAAAGCGTCAGCAACGGGTCGGCCTGGCACTGGCCACAGGTTC
CCGGGTTGCCGGTGCACCCCGGCTTGGACTCCTGTGGTTTCGGGGTGGGCTGTTCCAGTGACGTC
ACCAACGGCACCAGGTTTGGTGCCAAGTTTTGGAAGTTCAGGATC
Found at i:148054 original size:12 final size:12
Alignment explanation
Indices: 148037--148097 Score: 95
Period size: 12 Copynumber: 5.1 Consensus size: 12
148027 GCATCACCAG
148037 CCTCCTCAGCAC
1 CCTCCTCAGCAC
*
148049 CCTCCTGAGCAC
1 CCTCCTCAGCAC
*
148061 CCTCCTCGGCAC
1 CCTCCTCAGCAC
148073 CCTCCTCAGCAC
1 CCTCCTCAGCAC
*
148085 CCTCTTCAGCAC
1 CCTCCTCAGCAC
148097 C
1 C
148098 GTCAGCCTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.15, C:0.56, G:0.11, T:0.18
Consensus pattern (12 bp):
CCTCCTCAGCAC
Left flanking sequence: Indices 147537 -- 148036
CTCGCCGTTGTTGTTCTTCTCGACATCGAGGTTGGCGGCCTGGACCATCCGGTGCTTGAGGTAGT
CGATCTTGTCGTCCTGCATCCGCTCCAAGTCGTCATAGTCGACCTTGCGGCGGCGGGTGGTGGTC
AGCTTCATGGCTGCGTCCATCTTCTCCTCCAACTCGCGGCGCTTGCGCAGCTCGGCGTCCTCGTA
GACTCCAGGGAGGTCTTCAGGCACCGCCTCGACCGCTCCGGGGGGTGGCAGCCCCGTGCGGGCCG
CCCGCGGACGCCGGATGTTCTTTTTGTGGGTCACCAGCTTGGCGGTGACGTTGAACCGGTCGTCG
TTGTCGTCGATGTCCTCGTTGAGGTCCTTTTCGGTGAACTCGGGGCCCGAGTCCGAGGCAGCGCC
AGCGTCGTCGGAGACAGCGCCCGCGTCGTCGTTGGCATCACCCGCGTTGTGTTCAGAGTCGGCGT
CCTGGGGATTGTTGTCGTCTCTGGCTTCGTCTCTGGCATCACCAG
Right flanking sequence: Indices 148098 -- 148597
GTCAGCCTCACCTGCGACCTCATCCACAACACGCGCATCGGCCTCGTCCACCGCGCCGACGTCGG
GCTTGGTTTCTTCGTCAAGCGCGTCCGCCTCCTCGCGCGCCAGCTCGAGCACCTGGGCCTCTGTC
TCCTGGGCACCCACGTTCACTTTGGTTTCGTCGTCGTCCATAGCCCTGGTGGTGGGGTGCGGTGC
CGCGAAACTTTCAACAGGTGCAGCACCGGTGCGCACTCCGAGGCAAAAACTGGGTGTGCCACCAG
CAACCGCCACATGTCGCAATACATCGGCAAGACGATCTCGTTGATCTCCAACAAGGGGTTGCGCT
ACGTGGGGTTGTTGGACAACATCAATGCCGACGACGCCACCGTGGCCCTCAAGCAGGTGCGGTTG
TTTGGCTCCGAGGGCCGCCTTGCCGCCGCCGGCACCCCCAACTTGGAGGTGATGCCTGGTCTGGA
GGTGTACGACTACGTGGTGTTCAGGGGGTCTGATGTCAAGGACTT
Found at i:173262 original size:8 final size:8
Alignment explanation
Indices: 173251--173281 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
173241 CCTTCTGCGT
173251 CTCTGCTC
1 CTCTGCTC
173259 CTCTGCTC
1 CTCTGCTC
173267 CTCTGCTC
1 CTCTGCTC
173275 CTCTGCT
1 CTCTGCT
173282 TCTTTACTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.13, T:0.39
Consensus pattern (8 bp):
CTCTGCTC
Left flanking sequence: Indices 172751 -- 173250
ATCAACTTTTTGCAGGCCGTCAACTGCATTGTGTTGGAGCTCTTTGAGAACGCCGGGTGGTTGAC
GGACCACAACTTCGTGGGCACCGACGACAACCCGGGGTGGAGTGCCTTCACCTACGTGTGGTGTC
TGCGGGTGTGGGCTGCCTACGTGGTGATCGAGATCATCGAGTTGTTCCGGCGGGTGCCCCTGCTG
AAGTGGGACAAGAACTGGAAGATTGCGGTGTTCCGCAACGCCGTCCAGATCCCGTTGGTGGTGCA
CTGGTCGTTGTACGAGGGGTGCCTTTCGCCGTTCTGGGTGGGCTTGTGTGGCACCGGTGCCTCCT
GGTGGGGCTTCAAGGACCTCTGGACCAGCGTGTTCAAATCGTTGTGATTATTTATTCAGAATAGA
CTAAAGTTAGTGCTAGTGTAGGTGCGGTGGCACTGTCTATGTGGCTTTGATTCTGTTGATGCCTG
TGCCCTGTGATTAACTCATGACTCTTTCTTGTCCACCTTCTGCGT
Right flanking sequence: Indices 173282 -- 173781
TCTTTACTTGATCTCTTGAGGGTTCTTCTTCGCATAGGCTCGCGACCGGTCAAAGTAGAGGTTCG
GGTGGTCCATGTGGTCGACGTCAGCGCCCGGGTGGGTGAGTTCAAACACCCGCGTGCACGCTGCC
GTGTAGTCAGCACCGTTTTTGTGGGGTCCGTCCACCATGTCAGCCACTCCACGGGAATCGGTGTC
GCTGAGGCCCATGTCGCGAAGCAGCAGCTCCAACAGCGTGCGGTTCAAGTCCCGGTAGGGGCACC
CGTGGAACTGGTCGCGGCCAGGTCGCGGGCGGGCAAAGATCTTGGCACACGGCGGCGGCTGGTAG
TTGATGCGGGAGCCATTCAACCCGTAGGAGTGGTTGACGTTGTACGCGTAGTTCTTGCGGAAGTC
CTCCGAGGTGATTTTGCCGCCCTTGGTGAACTGCTGGCGCCAAAAGGCAAGCGCCTCCTCCACCC
CCAAGCCAATGCCCTTGAGGAACAACCCAAACTGCAACCGGGCCT
Found at i:182598 original size:12 final size:12
Alignment explanation
Indices: 182540--182609 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
182530 TTGCCTTCAA
182540 CCACGGCCACGAG
1 CCACGGCCAC-AG
*
182553 -CACGGGCACAG
1 CCACGGCCACAG
*
182564 CCATGGCCACAG
1 CCACGGCCACAG
*
182576 CCATGGCCACAG
1 CCACGGCCACAG
* *
182588 TCACGGGCACAG
1 CCACGGCCACAG
* *
182600 TCACAGCCAC
1 CCACGGCCAC
182610 GCCCCCGAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
11 2 0.04
12 46 0.96
ACGTcount: A:0.26, C:0.41, G:0.27, T:0.06
Consensus pattern (12 bp):
CCACGGCCACAG
Left flanking sequence: Indices 182040 -- 182539
GTGTTTCTCCCGCTTGCCATCCAAGTGGACCGTGTCCCCGAGGCCGTGGACTCCGACGGTGAGCC
CGAGAAGATCCAACCGCTGATCTTGCGTGATCTCGTCAGCCACAGCGATACCCGGGCCATCTTCA
ACTTTTTGCTCTTGAACCTGGCGTTCATGGTGGTGCAGCTTCTCTACCTGTTCCGGCTGAAGCTG
TTGGGTTTGCTCAGTGACTCGCTTCACATGGCCTTGGACTGCACCTCACTCGCATTGGGGCTTGT
TGCTGGTGTATTGGCCAAGCAGCCCAACGACACCAATTCCAAGTTTCCCTTTGGTCTCAAAAACT
TTGAGATTTTGGCCGGGTTCACCAATGGGACGTTATTGGTTGGGATCAGTGGCAGCATTGTGTTT
GAGGCCATTGGTCGCATTGTCCACCCGGTGCAGTTGGAAAAGACCACAGAACTCATTATTGTGTC
ATTTCTTGGTCTTTTGGTCAACCTTGTTGGTATTTTTGCCTTCAA
Right flanking sequence: Indices 182610 -- 183109
GCCCCCGAAAAGGAGCACAGTCACGAACATGGCCACAGTCACACTGGACTCGGGCTTGAATTCCC
CGAGGAGGAGAAGGAGGGAATGAACGAGAACATGAAGGGAATTTTCCTCCACATCATGGCCGACA
CCTTGGGCTCCGTGGGTGTTGTGGTGCTGACGCTCCTCACCAAGCTCTTCCACCTGGACATTTTT
GACCCCGTGGCCTCGATTCTCATTGCGGGGCTCATTTTCATGAGTGCGGTGCCATTGATCAAGCT
GACAGCATCGCAACTCCTATTGCAGCTTTCGCCAGCACGGGAAGATACCATCCGCACCATTCTCA
ACGAGATCCTTGCCACCCGCGGTGTCAAATCGTTCACCACGCCCCGGTTCTGGCCCAACCTGACC
AACACCGTGTCGGGTTACATCCATGTCCAGATCTACCGTGGCGAGAACATGAACCATATCCGCAA
GCAGGTTGAGCGGTTGTTCGATAACCAGCGAGTCGAGGTGATGGT
Found at i:196330 original size:18 final size:19
Alignment explanation
Indices: 196309--196409 Score: 74
Period size: 18 Copynumber: 5.6 Consensus size: 19
196299 CTTGCTCTCA
*
196309 TTGGCTTCCTTTGTG-TCC
1 TTGGCTTCCTTTGGGCTCC
196327 TTGGCTTCC-TTGGGCTCC
1 TTGGCTTCCTTTGGGCTCC
196345 TTGGCTTCC-TT--G-TCC
1 TTGGCTTCCTTTGGGCTCC
* *
196360 TTGGCCTCC-TTAGGCTCC
1 TTGGCTTCCTTTGGGCTCC
*
196378 TTGGGC-TCCTTCTTGGCGTCC
1 TT-GGCTTCCTT-TGGGC-TCC
*
196399 TTGGCGTCCTT
1 TTGGCTTCCTT
196410 GTCGGTGGCC
Statistics
Matches: 71, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
15 13 0.18
16 1 0.01
17 5 0.07
18 31 0.44
19 4 0.06
20 7 0.10
21 10 0.14
ACGTcount: A:0.01, C:0.33, G:0.25, T:0.42
Consensus pattern (19 bp):
TTGGCTTCCTTTGGGCTCC
Left flanking sequence: Indices 195809 -- 196308
CGGTGATCTCACCGGTCATGGCAACGGTCGGGGGCAACAGCTGGTTGAGCGCCAAGGAAATGAGC
GATGACGTAAACGAAATACCCGCAGAAGGGCCGTCCTTCGGGATTGCCCCGTCGGGACAGTGGAC
ATGGATTTCGGCCGCCTCAAAGAAGCGGTTGTCAGGGAAGTTCTTGACCATGTACAGCTTGGCAA
ACGAATAGGCGATCTGCGCCAGCTCCTTCATCACGTCCTTGAGCGACCCAGTGACGTGGACGCCC
GCGTGGCCCAGGCCCAGCGCGATGGAGTGGGTGAGGATCGACTCGATGTAGAGCGCGTCGCCGTT
GCCCAGGGTCAGGTACGAGAGACCGGTGGCCACACCAGGAGGCGGGAGTTCGTAGACACGGTCGC
GGGTGTAGATCTCGGGCCCCACGTAGTCCTTGAGGTTGGCAGGCGTCACCTCGAGGTTGATGTCG
GCGGGGATCTCCATCGGCACCGGGGCGTCGTCGTCCTTGCTCTCA
Right flanking sequence: Indices 196410 -- 196909
GTCGGTGGCCACTCCGATCTCGGACTCCTTCAAGTCCTTGCTCTCGGGCTCCTTGGCGTCCTTGC
TCTCAGTCTCCTTGGTCTCTGCCACCTCCTTGGCCGTCTTGGCCTCCTTCTCCTGCGCTGCCGCC
TCGCGCTCCTCCACCATCTCGACGATTTTGAGCGACGCCTTCGAGAAGATGCGGGTGATCAACTT
CTTGATGTTCCGCAACCCCAGCTCGCGGCAGTACTTCTCGATGAGTCGCGAGATGGTGTCGTCCG
AGATGTTGACGTGCGAGCTCTCCAACCCAGCCTTCTTCAGGGCGTCGGGGATCAAGTGGCGCTTG
GCAATCTCGATCTTCTCGTTGTTGGTGTACCCCAGCACGTCGATGATCTCCATCCGGTCGCGCAA
CGGCGGCGGGATGTTCCCTAAGTAGTTGGCAGTACACACAAACAACACCTTACTCAAGTCCACCT
TGACGTCAATGTAGTTGTCGACAAAGGCGTTGTTCTGCTCGGGGT
Found at i:196336 original size:9 final size:9
Alignment explanation
Indices: 196309--196410 Score: 63
Period size: 9 Copynumber: 11.3 Consensus size: 9
196299 CTTGCTCTCA
196309 TTGGCTTCC
1 TTGGCTTCC
*
196318 TTTG-TGTCC
1 TTGGCT-TCC
196327 TTGGCTTCC
1 TTGGCTTCC
196336 TTGGGC-TCC
1 TT-GGCTTCC
196345 TTGGCTTCC
1 TTGGCTTCC
196354 TT-G--TCC
1 TTGGCTTCC
*
196360 TTGGCCTCC
1 TTGGCTTCC
196369 TTAGGC-TCC
1 TT-GGCTTCC
*
196378 TTGGGCTCCTTC
1 TT-GGCT--TCC
*
196390 TTGGCGTCC
1 TTGGCTTCC
*
196399 TTGGCGTCC
1 TTGGCTTCC
196408 TTG
1 TTG
196411 TCGGTGGCCA
Statistics
Matches: 76, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
6 5 0.07
7 1 0.01
8 5 0.07
9 51 0.67
10 7 0.09
11 3 0.04
12 4 0.05
ACGTcount: A:0.01, C:0.32, G:0.25, T:0.41
Consensus pattern (9 bp):
TTGGCTTCC
Left flanking sequence: Indices 195809 -- 196308
CGGTGATCTCACCGGTCATGGCAACGGTCGGGGGCAACAGCTGGTTGAGCGCCAAGGAAATGAGC
GATGACGTAAACGAAATACCCGCAGAAGGGCCGTCCTTCGGGATTGCCCCGTCGGGACAGTGGAC
ATGGATTTCGGCCGCCTCAAAGAAGCGGTTGTCAGGGAAGTTCTTGACCATGTACAGCTTGGCAA
ACGAATAGGCGATCTGCGCCAGCTCCTTCATCACGTCCTTGAGCGACCCAGTGACGTGGACGCCC
GCGTGGCCCAGGCCCAGCGCGATGGAGTGGGTGAGGATCGACTCGATGTAGAGCGCGTCGCCGTT
GCCCAGGGTCAGGTACGAGAGACCGGTGGCCACACCAGGAGGCGGGAGTTCGTAGACACGGTCGC
GGGTGTAGATCTCGGGCCCCACGTAGTCCTTGAGGTTGGCAGGCGTCACCTCGAGGTTGATGTCG
GCGGGGATCTCCATCGGCACCGGGGCGTCGTCGTCCTTGCTCTCA
Right flanking sequence: Indices 196411 -- 196910
TCGGTGGCCACTCCGATCTCGGACTCCTTCAAGTCCTTGCTCTCGGGCTCCTTGGCGTCCTTGCT
CTCAGTCTCCTTGGTCTCTGCCACCTCCTTGGCCGTCTTGGCCTCCTTCTCCTGCGCTGCCGCCT
CGCGCTCCTCCACCATCTCGACGATTTTGAGCGACGCCTTCGAGAAGATGCGGGTGATCAACTTC
TTGATGTTCCGCAACCCCAGCTCGCGGCAGTACTTCTCGATGAGTCGCGAGATGGTGTCGTCCGA
GATGTTGACGTGCGAGCTCTCCAACCCAGCCTTCTTCAGGGCGTCGGGGATCAAGTGGCGCTTGG
CAATCTCGATCTTCTCGTTGTTGGTGTACCCCAGCACGTCGATGATCTCCATCCGGTCGCGCAAC
GGCGGCGGGATGTTCCCTAAGTAGTTGGCAGTACACACAAACAACACCTTACTCAAGTCCACCTT
GACGTCAATGTAGTTGTCGACAAAGGCGTTGTTCTGCTCGGGGTC
Found at i:196368 original size:24 final size:24
Alignment explanation
Indices: 196333--196380 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
196323 GTCCTTGGCT
*
196333 TCCTTGGGCTCCTT-GGCTTCCTTG
1 TCCTTGGCCTCCTTAGGC-TCCTTG
196357 TCCTTGGCCTCCTTAGGCTCCTTG
1 TCCTTGGCCTCCTTAGGCTCCTTG
196381 GGCTCCTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.02, C:0.35, G:0.23, T:0.40
Consensus pattern (24 bp):
TCCTTGGCCTCCTTAGGCTCCTTG
Left flanking sequence: Indices 195833 -- 196332
CGGTCGGGGGCAACAGCTGGTTGAGCGCCAAGGAAATGAGCGATGACGTAAACGAAATACCCGCA
GAAGGGCCGTCCTTCGGGATTGCCCCGTCGGGACAGTGGACATGGATTTCGGCCGCCTCAAAGAA
GCGGTTGTCAGGGAAGTTCTTGACCATGTACAGCTTGGCAAACGAATAGGCGATCTGCGCCAGCT
CCTTCATCACGTCCTTGAGCGACCCAGTGACGTGGACGCCCGCGTGGCCCAGGCCCAGCGCGATG
GAGTGGGTGAGGATCGACTCGATGTAGAGCGCGTCGCCGTTGCCCAGGGTCAGGTACGAGAGACC
GGTGGCCACACCAGGAGGCGGGAGTTCGTAGACACGGTCGCGGGTGTAGATCTCGGGCCCCACGT
AGTCCTTGAGGTTGGCAGGCGTCACCTCGAGGTTGATGTCGGCGGGGATCTCCATCGGCACCGGG
GCGTCGTCGTCCTTGCTCTCATTGGCTTCCTTTGTGTCCTTGGCT
Right flanking sequence: Indices 196381 -- 196880
GGCTCCTTCTTGGCGTCCTTGGCGTCCTTGTCGGTGGCCACTCCGATCTCGGACTCCTTCAAGTC
CTTGCTCTCGGGCTCCTTGGCGTCCTTGCTCTCAGTCTCCTTGGTCTCTGCCACCTCCTTGGCCG
TCTTGGCCTCCTTCTCCTGCGCTGCCGCCTCGCGCTCCTCCACCATCTCGACGATTTTGAGCGAC
GCCTTCGAGAAGATGCGGGTGATCAACTTCTTGATGTTCCGCAACCCCAGCTCGCGGCAGTACTT
CTCGATGAGTCGCGAGATGGTGTCGTCCGAGATGTTGACGTGCGAGCTCTCCAACCCAGCCTTCT
TCAGGGCGTCGGGGATCAAGTGGCGCTTGGCAATCTCGATCTTCTCGTTGTTGGTGTACCCCAGC
ACGTCGATGATCTCCATCCGGTCGCGCAACGGCGGCGGGATGTTCCCTAAGTAGTTGGCAGTACA
CACAAACAACACCTTACTCAAGTCCACCTTGACGTCAATGTAGTT
Found at i:196461 original size:24 final size:24
Alignment explanation
Indices: 196427--196487 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
196417 GCCACTCCGA
196427 TCTCGGACTCCTTCAAGTCCTTGC
1 TCTCGGACTCCTTCAAGTCCTTGC
* ***
196451 TCTCGGGCTCCTTGGCGTCCTTGC
1 TCTCGGACTCCTTCAAGTCCTTGC
* *
196475 TCTCAGTCTCCTT
1 TCTCGGACTCCTT
196488 GGTCTCTGCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.07, C:0.38, G:0.20, T:0.36
Consensus pattern (24 bp):
TCTCGGACTCCTTCAAGTCCTTGC
Left flanking sequence: Indices 195927 -- 196426
GGGACAGTGGACATGGATTTCGGCCGCCTCAAAGAAGCGGTTGTCAGGGAAGTTCTTGACCATGT
ACAGCTTGGCAAACGAATAGGCGATCTGCGCCAGCTCCTTCATCACGTCCTTGAGCGACCCAGTG
ACGTGGACGCCCGCGTGGCCCAGGCCCAGCGCGATGGAGTGGGTGAGGATCGACTCGATGTAGAG
CGCGTCGCCGTTGCCCAGGGTCAGGTACGAGAGACCGGTGGCCACACCAGGAGGCGGGAGTTCGT
AGACACGGTCGCGGGTGTAGATCTCGGGCCCCACGTAGTCCTTGAGGTTGGCAGGCGTCACCTCG
AGGTTGATGTCGGCGGGGATCTCCATCGGCACCGGGGCGTCGTCGTCCTTGCTCTCATTGGCTTC
CTTTGTGTCCTTGGCTTCCTTGGGCTCCTTGGCTTCCTTGTCCTTGGCCTCCTTAGGCTCCTTGG
GCTCCTTCTTGGCGTCCTTGGCGTCCTTGTCGGTGGCCACTCCGA
Right flanking sequence: Indices 196488 -- 196987
GGTCTCTGCCACCTCCTTGGCCGTCTTGGCCTCCTTCTCCTGCGCTGCCGCCTCGCGCTCCTCCA
CCATCTCGACGATTTTGAGCGACGCCTTCGAGAAGATGCGGGTGATCAACTTCTTGATGTTCCGC
AACCCCAGCTCGCGGCAGTACTTCTCGATGAGTCGCGAGATGGTGTCGTCCGAGATGTTGACGTG
CGAGCTCTCCAACCCAGCCTTCTTCAGGGCGTCGGGGATCAAGTGGCGCTTGGCAATCTCGATCT
TCTCGTTGTTGGTGTACCCCAGCACGTCGATGATCTCCATCCGGTCGCGCAACGGCGGCGGGATG
TTCCCTAAGTAGTTGGCAGTACACACAAACAACACCTTACTCAAGTCCACCTTGACGTCAATGTA
GTTGTCGACAAAGGCGTTGTTCTGCTCGGGGTCCAAGATCTCAAGGAACGCCAGCGCCGCCCCGC
CCAGCCGCAGCAAGTCGAGCTTGTCGATCTCGTCGATCAACATCA
Found at i:196488 original size:24 final size:24
Alignment explanation
Indices: 196443--196489 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
196433 ACTCCTTCAA
*
196443 GTCCTTGCTCTCGGGCTCCTTGGC
1 GTCCTTGCTCTCAGGCTCCTTGGC
*
196467 GTCCTTGCTCTCAGTCTCCTTGG
1 GTCCTTGCTCTCAGGCTCCTTGG
196490 TCTCTGCCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.02, C:0.36, G:0.26, T:0.36
Consensus pattern (24 bp):
GTCCTTGCTCTCAGGCTCCTTGGC
Left flanking sequence: Indices 195943 -- 196442
ATTTCGGCCGCCTCAAAGAAGCGGTTGTCAGGGAAGTTCTTGACCATGTACAGCTTGGCAAACGA
ATAGGCGATCTGCGCCAGCTCCTTCATCACGTCCTTGAGCGACCCAGTGACGTGGACGCCCGCGT
GGCCCAGGCCCAGCGCGATGGAGTGGGTGAGGATCGACTCGATGTAGAGCGCGTCGCCGTTGCCC
AGGGTCAGGTACGAGAGACCGGTGGCCACACCAGGAGGCGGGAGTTCGTAGACACGGTCGCGGGT
GTAGATCTCGGGCCCCACGTAGTCCTTGAGGTTGGCAGGCGTCACCTCGAGGTTGATGTCGGCGG
GGATCTCCATCGGCACCGGGGCGTCGTCGTCCTTGCTCTCATTGGCTTCCTTTGTGTCCTTGGCT
TCCTTGGGCTCCTTGGCTTCCTTGTCCTTGGCCTCCTTAGGCTCCTTGGGCTCCTTCTTGGCGTC
CTTGGCGTCCTTGTCGGTGGCCACTCCGATCTCGGACTCCTTCAA
Right flanking sequence: Indices 196490 -- 196989
TCTCTGCCACCTCCTTGGCCGTCTTGGCCTCCTTCTCCTGCGCTGCCGCCTCGCGCTCCTCCACC
ATCTCGACGATTTTGAGCGACGCCTTCGAGAAGATGCGGGTGATCAACTTCTTGATGTTCCGCAA
CCCCAGCTCGCGGCAGTACTTCTCGATGAGTCGCGAGATGGTGTCGTCCGAGATGTTGACGTGCG
AGCTCTCCAACCCAGCCTTCTTCAGGGCGTCGGGGATCAAGTGGCGCTTGGCAATCTCGATCTTC
TCGTTGTTGGTGTACCCCAGCACGTCGATGATCTCCATCCGGTCGCGCAACGGCGGCGGGATGTT
CCCTAAGTAGTTGGCAGTACACACAAACAACACCTTACTCAAGTCCACCTTGACGTCAATGTAGT
TGTCGACAAAGGCGTTGTTCTGCTCGGGGTCCAAGATCTCAAGGAACGCCAGCGCCGCCCCGCCC
AGCCGCAGCAAGTCGAGCTTGTCGATCTCGTCGATCAACATCAAC
Found at i:197550 original size:12 final size:12
Alignment explanation
Indices: 197533--197558 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
197523 GCGCTTCTGC
197533 AACTCCTTGATG
1 AACTCCTTGATG
197545 AACTCCTTGATG
1 AACTCCTTGATG
197557 AA
1 AA
197559 GAGCCGTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (12 bp):
AACTCCTTGATG
Left flanking sequence: Indices 197033 -- 197532
CGGGAATCGACCCGACGTAGGTGCGCCGGTGGCCCTTGACCTCGTGCACGTCCTGGATGCCGCCC
ATGGCGATGCGCACGTACTTGCGGTTGAGGGCCTCGGCGATCAGTTTGGCAATCAGTGTCTTCCC
GGTACCGGGAGGGCCCAGCAAACACAAGATCTTGCCGTCGACTTTGCCCAGCACCCGGCCCATGG
AGATGAATTCGAGAATGCGCTCCTTGACGTCCTTGAGCCCGTAGTGGTCCCGGTCGAGAATGGTC
TTGGCCTCCTTGATGTTGAACCGGTCCTGCGAGTAGATGCCCCACGGAATCAGCGTCAACCAGTC
GAGGTAGCGCTCCGACACCCCCAACTCGCTCAGGTGCTCGTTCTGCAGCTCCATCTTTTGTTTCT
CGGCGTTGTATGCCTCCAACGCCTCCTCGGTCATCTTCAAGTGCTGGAGACGCTCGTCGAACTTG
TGCGTCTTGGAGTTCTCCAGCTCGGAGATCCCGGCGCGCTTCTGC
Right flanking sequence: Indices 197559 -- 198058
GAGCCGTGTCTGGTACTCGTCAGCCTTGGCACTCAAGTTGTGGATGGTGTTCTCCTTGATCATGC
TCGCCTTGACCTCGATCTTGAGGAGCTCTAACACCTTGCTAAGCCGTTCCTCGATGTTGAGCAGC
TCCAAGATCTCCTGGATCTTCTTCGGGTCGCCGTGGATCAGCGAACCAATGTAGTCGGCAAACTT
GGACGGGTCCAGCAAAAACTTGGTCAACTCGCGGTGCTGCAACTTTTCCAGCGGGTTCTTCAGCG
CCAACTGGTTCATCAACACCTTGAGCAGCTCCACCAACAGCGCAATCTCCGTCAGGTCCTTGTCG
TAGGGCTCGTCCGCCACCGGCTTCACGGTGGCACACGAGATGTTGAGCCCCTTCAAGTACGCCAG
CGGCAGCAGGTCGTCGTCGGACGCGCGCTCGGCGGCGTTGGCCTCGCGCGTGGTCAACTCCTGCA
ACTGGCACCGCTCAAGCGGGTACGCCAACACGTTCAAAAACCCGG
Found at i:198524 original size:18 final size:18
Alignment explanation
Indices: 198501--198549 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
198491 TGTCGGCGGG
198501 GTCGTCCTTGGGGCCGTC
1 GTCGTCCTTGGGGCCGTC
198519 GTCGTCCTTGGGGCCGTC
1 GTCGTCCTTGGGGCCGTC
198537 GTCGTCCTTGGGG
1 GTCGTCCTTGGGG
198550 TCGTTTTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.00, C:0.31, G:0.41, T:0.29
Consensus pattern (18 bp):
GTCGTCCTTGGGGCCGTC
Left flanking sequence: Indices 198001 -- 198500
GTCAACTCCTGCAACTGGCACCGCTCAAGCGGGTACGCCAACACGTTCAAAAACCCGGGCCGCGG
CACCGACAACCGGATGATCTGGCAGTGCACACCAATGTCGTGCACCGACAGCTTCAGGCGGATGA
CGTCGGTGTCCGGGTCGGCCGCGTCGCGCACGTGGAAGAACACAAAGTACGGTTCACGTTTGTCG
ATGATGGTGTGGATGGCATCGATCACCTCGGGGTCGGTGACGTTGATGGCAAACGGACGGCCGGG
CAAGGGGATGCGGTCCTTCATCGAGATCGCAAGCAACAGCGGGTACAACCCGGTGTCCGGGTTCA
CCTCCATCTTGGCGGGCTCGCTGTCGCCGTCGCCGGGAGGTTTCTGGCCGTTGTTACCGTCTCCC
GAGCCACCCAGGCCCAGTGGGGGAGCTCCCGCGCCACCAGCCGCGGCTGCGTTGCCTCCCTTGGC
GCTCTTGTTCTTGACCAACACGATCTCGATCCCGTTGTCGGCGGG
Right flanking sequence: Indices 198550 -- 199049
TCGTTTTTGGGCACCTCGTTGTCTTTGGGGTCTTTCTCCTTGGGCTCCTCTTTGGCAGGAGCGTC
GTCCTTGGGTGCCTTGTCCCGGGCATCCTCCATCAGCAACACCCGGGCCCAGTCGCGTGCCGTCA
TCGTCGTGGCCAGCGACACAGCCAACGGGGCGGGACCCACCCGCAGCGCGTGGCGGAGGGCCATA
AGCACCCCGGGCTTCGCCGTTCGTACGATGCGTAGCGCCACTTTACTCGTCAACATCGTCGTGGT
AGCTCGAGCGGGCACGTTAGTCAGATGGGTGGCGGTGGTGGAGATTCGCACTGGCGGTCTCCTGT
ATATACCGAGGTCGGCTCTAGCAGGTTCGGCCGGGGATAAGGCCGGCGGGGTGTAGGGGAAAGGG
AGAGGTAGATTACGGGTGGTGGAGAAGTGGGTTGTTACAGGGATGGTGTTTCGTGGGTGGTGTGC
GTGGGGTGGGAGATCTACAGTGTGGCTGGAAGATCTCGGAGTGGA
Found at i:199153 original size:11 final size:11
Alignment explanation
Indices: 199134--199168 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
199124 AGGACGGGGT
*
199134 GCAGTGGTGTA
1 GCAGAGGTGTA
199145 GCAGAGGTGTA
1 GCAGAGGTGTA
199156 GCAGAGTGTGTA
1 GCAGAG-GTGTA
199168 G
1 G
199169 TTGAGAAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.23, C:0.09, G:0.46, T:0.23
Consensus pattern (11 bp):
GCAGAGGTGTA
Left flanking sequence: Indices 198634 -- 199133
CGGGCATCCTCCATCAGCAACACCCGGGCCCAGTCGCGTGCCGTCATCGTCGTGGCCAGCGACAC
AGCCAACGGGGCGGGACCCACCCGCAGCGCGTGGCGGAGGGCCATAAGCACCCCGGGCTTCGCCG
TTCGTACGATGCGTAGCGCCACTTTACTCGTCAACATCGTCGTGGTAGCTCGAGCGGGCACGTTA
GTCAGATGGGTGGCGGTGGTGGAGATTCGCACTGGCGGTCTCCTGTATATACCGAGGTCGGCTCT
AGCAGGTTCGGCCGGGGATAAGGCCGGCGGGGTGTAGGGGAAAGGGAGAGGTAGATTACGGGTGG
TGGAGAAGTGGGTTGTTACAGGGATGGTGTTTCGTGGGTGGTGTGCGTGGGGTGGGAGATCTACA
GTGTGGCTGGAAGATCTCGGAGTGGAAAAATGTGTCGGATGTAGGACGCAGTGTTTGCCACCGGG
GACGGGGCTAGTCGCCACCGGTGGAGGAACAGCTTAGGACGGGGT
Right flanking sequence: Indices 199169 -- 199668
TTGAGAAGGCCGGGGAGTTCGGGCGATGCCGTAAAACTCGCTTCGCACTGTCGTATACGGTGTAG
TGTGCAACCAGGGAGGTTGTAGGTGATGACCGGGGGCAATAACCAATGGTGGGTGTTTAGTGTAG
TGTTTGCTATGGTTCCGCTAGTTCTACTAGATCTGGTAGCTTGAATGGTAGTCTTTCTTAGTGGT
CCTATTGATTCTGTTGATTCCACTGCTCCCCTTGGTTCTAGTGATTTCCTTGGAATTCAAAGTTG
GATTGGTTTTACTGATTCATCAGTTTCATTGGTATTGATAGTTTTATTGGTTTTACTAGTTCATT
TGTTTTAATCCCAATAGTTCACTGGCTTCATTGCTTTTGTTCTGGTTCGTCAATCATTATCGTCT
ATGTATCGTCTCTGGCCTACTACGACCCCTCTCTACACACTAAACACGTTCTTTTTCTTTTTGTT
CACGGGCAGCGTGGGCTCCGGAAGCTCCAACATCGGATCCAGCAC
Found at i:200477 original size:22 final size:21
Alignment explanation
Indices: 200448--200488 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
200438 GCGTCCCGGC
200448 GTGGGTGGGTG-TTGTTTGTGT
1 GTGGGT-GGTGATTGTTTGTGT
200469 GTGGAGTGGTGATTGTTTGT
1 GTGG-GTGGTGATTGTTTGT
200489 ACGACGCGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.05, C:0.00, G:0.49, T:0.46
Consensus pattern (21 bp):
GTGGGTGGTGATTGTTTGTGT
Left flanking sequence: Indices 199948 -- 200447
CCGTGAGCTCTCCAGAAGAATATCGTCCGATTTGTCGTCACTGTCCGCAGAGGAGTACCCCGTGG
TGTCCACCACCTGGAACCGCAGCTTTTTCGGGGCACTAGGCCCAACAGACAGTCCCCGCGACACC
AGTCCCAGCTTGCCAAAGTCGGGATCGAGCGCATTGTGCCATGGTTTCGGTACATCGCTCCGGAA
CGCCTGGGCTTCCTGGAGGCGCGCGCGGAGTTTCTCGTTCTCCTTGCGGAGCACGCTTATACGGG
CCTCGTGCTTCTTGAGAGCGGCCGAGTGTTCCTGTTTGAGCTTCCCGAGAGCCACTTCGTGCGAC
TTGTCCGGAGGAATGGGCGATAGCGGGCGGTCGCGGGTGAGGGCGTGGAGGTGGTATACAGCGAG
CCGTATAAGCAGTTTGCGGCGCTCGTCCTCGCGTTCGAGCGCGGCTATCTCGTTGTCGGTGGCGT
AGTACTCTTCTAACCGAGTCTCTTGTTCGTTCATCGCGTCCCGGC
Right flanking sequence: Indices 200489 -- 200988
ACGACGCGCTCGAATATGCGAGATGATCTGGAGTAGCGAAACCACGGTTTCCAAGTATCAGGTTC
AAAGACTGAACCCGGATACAAATGTCTCCGGAAATCTAAGATTCAAATGTTTCCAGAATCTGTTC
AGAGTAATTTTTTGTCTATATACATTGTAGGTGTTTAAAAGATTCTTCTCCCATTCACGTACACC
ACCTCGGGCTGCGAACCCATGAAGTCGACCATATCATGGGTGGCGTCGATAAACAACTCGCGTAA
CCGCGGCTTTTCGCCCACGCACTCGATCACCGGAATTTCTGTTTGCGGTTGGTTGTACGGTGGCT
TATTGTACTCCCAAATCAAGGTCAAGGACTCCACCAGCGGGGGAATTCTCAACGGTGTTGCGAAG
TCTGGCCACACGTTGAGACGCAATCGAAGATAGCGGATCAGGCACTGCACAAGCATGTCCGAGAG
AAAGTCTAGTGGGGGTAAAGCGTAGAAAATCTGAGCCTCTATAAG
Found at i:203824 original size:12 final size:12
Alignment explanation
Indices: 203809--203838 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
203799 AAAAGGGTGA
*
203809 AGAAGCGTTTGG
1 AGAAGCGTGTGG
203821 AGAAGCGTGTGG
1 AGAAGCGTGTGG
203833 AGAAGC
1 AGAAGC
203839 CAAAGAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.43, T:0.17
Consensus pattern (12 bp):
AGAAGCGTGTGG
Left flanking sequence: Indices 203309 -- 203808
GGTGCTGCGTGTCGATATGGAGGCTCAGGGAACTCCTCTTCCTCGATCGGGGCTTTTGCATGCAT
TGCACCGGTACGTGGGGGCCCAAACGGACATAGAGCGGCGTCTGATGGACGACCTGGCGCTTTTG
ACGCTTGGGATGCTTGTGGAAACGATGGTAAAGCTGTTGGTGACGCCTGAGATGGCCCAGGCGTA
CACGGGGGAAGAGGAGGACACCACGCCGGCCGTGGGGTACCAGCGGCTGGTGGTTCAGTTGTTGG
ATGACGACGTTGAGGCGGACCAGGTGTCGGAAGAGGATATTCCGCTCCGGTTGGAGGCTGAGCCG
CGTGCTGAGCGTGAGGCGGACCAGCCTACCGAAGGGACTTCTCAGGATGACCAGACGCCCCGGTC
TGGCACACCTCGAGCTGCTACGCCCCAGGTCGAGCCCACTCAACCCGAACCTACCCAGACTGAAC
CTTCCCAGCCAAGACAACGCCGAGAGCGGGTGAAGAAAAGGGTGA
Right flanking sequence: Indices 203839 -- 204338
CAAAGAAGAAGCGGCGTCAAGGGTTTGCCTAGAGCAGGACATCAAACGGTGCTTAATCGCATTGC
CAGCACCTAAGCTCTGCTAATCAATCCTTGATGGACTGATTTCATGACAACCCCCCAACATTTGT
CAGCGTTGGCTTCCATAAATAGTCCATTCTACCCCTTTGCATACTCTTAGACAATAAACATAGTC
ACAAGTTTACATCATCCAGTCTACTCACTCGATCTGGACCACCTGGCCTACCATCTTCGCTCTAC
GCTCTCCTTATCTAGTATGCATTATCTATGGTACAGTTACGCCTGGGGCTGGGGGGTGGCATCGG
ACTCGGGCTCGGTAGCATCGGTAAGCACGGGCTCGGCGATGTCGGTGCCCTCGTTCTCGCGGAGC
TCATTCATCCGCTGCTGGTACGCAGCCTCCTTACCCTGGTCCTTGGCCGAAGTCTCGATGTCGTA
CACCCGGTACAAGAGCTCCTGGGTGTCCTTCTTGTTCACCATCAA
Found at i:208292 original size:18 final size:19
Alignment explanation
Indices: 208265--208313 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
208255 GAGCCTGTCT
208265 AAGCACTAAGCCA-TGGCC
1 AAGCACTAAGCCATTGGCC
*
208283 AAGTACTAAG-CATTGGCC
1 AAGCACTAAGCCATTGGCC
*
208301 AAGCACTGAGCCA
1 AAGCACTAAGCCA
208314 CTTTTCGCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.14
Consensus pattern (19 bp):
AAGCACTAAGCCATTGGCC
Left flanking sequence: Indices 207765 -- 208264
TTTACGTGGCTGAGTTTGCGTGCAACTTTGTGCGGTTTGCCATGGTGGTGCTTTTTGCCGGGGTG
TTTATGTACGTGTACACGTTCCCGCTCCACATTTTGCCGCTGTCGTACTTGCTGTTGCGGGTGCT
AGTCCACCACGCGCGGGCGCTCTTGGACTACCAGAAACAGCTGTTGATTGTACAACGGCTTGCGG
CGCCGCTGGCGGTGCCTTCGGATCGGTGCGTGGTGTGTCTTGACGATTACGAAGAGGTGAGTGAT
GCCAGTCGGATGCGGTGTGGCCATGTGTTCCACAGCCAGTGCTTGCGCCACTGGTTGCGTCTGGT
GCCCGCGTGTCCCGTGTGTCGTACTCCAGTGAGGTAACGGTGGTTGTTCTCAACTCGTTGACTAT
TGATTGATTGATAATATTGAGTCTTTGTTCCAGGGCTACTTACAGTAGTCCTCCTACCTTATCAA
GTCTTCGCTTGCATTATCGGTTCTCGCCTACCACTGAGCCTGTCT
Right flanking sequence: Indices 208314 -- 208813
CTTTTCGCTGAGCCTAAATTATACCACGGAGCTTAATCGCTGAGCCACTATTTGATTTACGATCA
CTGAGACTGACACTCCATGCTCTATCTCATCGGAGGTTCTCTCTTGACGTTGGTCAACTTATTTA
TCCAACCCACAGGTTTCACCAAACCAAACGGTTCTCCTATTTCCTATCCAAAGGTTCTCCTATCC
AAACGGTTTCTCCTTTCCAAAGGGTTTTTCCTATCCAACGAGATTCATCAAATTACAAGGTCTTT
CCTGGTCCCAGGATTCACCTTATTAGTTTTCTTACTTCAGGTTTTCCAACATTGACCGAATTCCT
GTCTACCCTACGCATAACCACTCTACCTCCTAATCTGAACGTCATTATAATATACAAGAGAATTA
AATACCGCCGGGGCTAAAAGAACGAGGGATTATCGGTGCTGATCGCGGCCGCCAACAACTCGTCG
TCGTGCGGGCGCTCGTCCATGGGACGGTCGTCGCGGATAAAGTCG
Found at i:208521 original size:18 final size:17
Alignment explanation
Indices: 208485--208546 Score: 81
Period size: 18 Copynumber: 3.6 Consensus size: 17
208475 TTCTCCTATT
208485 TCCTATCCAAAGG-TTC
1 TCCTATCCAAAGGTTTC
208501 TCCTATCCAAACGGTTTC
1 TCCTATCCAAA-GGTTTC
* *
208519 TCCTTTCCAAAGGGTTTT
1 TCCTATCCAAA-GGTTTC
208537 TCCTATCCAA
1 TCCTATCCAA
208547 CGAGATTCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.28
17 2 0.05
18 27 0.68
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.35
Consensus pattern (17 bp):
TCCTATCCAAAGGTTTC
Left flanking sequence: Indices 207985 -- 208484
GTGCGTGGTGTGTCTTGACGATTACGAAGAGGTGAGTGATGCCAGTCGGATGCGGTGTGGCCATG
TGTTCCACAGCCAGTGCTTGCGCCACTGGTTGCGTCTGGTGCCCGCGTGTCCCGTGTGTCGTACT
CCAGTGAGGTAACGGTGGTTGTTCTCAACTCGTTGACTATTGATTGATTGATAATATTGAGTCTT
TGTTCCAGGGCTACTTACAGTAGTCCTCCTACCTTATCAAGTCTTCGCTTGCATTATCGGTTCTC
GCCTACCACTGAGCCTGTCTAAGCACTAAGCCATGGCCAAGTACTAAGCATTGGCCAAGCACTGA
GCCACTTTTCGCTGAGCCTAAATTATACCACGGAGCTTAATCGCTGAGCCACTATTTGATTTACG
ATCACTGAGACTGACACTCCATGCTCTATCTCATCGGAGGTTCTCTCTTGACGTTGGTCAACTTA
TTTATCCAACCCACAGGTTTCACCAAACCAAACGGTTCTCCTATT
Right flanking sequence: Indices 208547 -- 209046
CGAGATTCATCAAATTACAAGGTCTTTCCTGGTCCCAGGATTCACCTTATTAGTTTTCTTACTTC
AGGTTTTCCAACATTGACCGAATTCCTGTCTACCCTACGCATAACCACTCTACCTCCTAATCTGA
ACGTCATTATAATATACAAGAGAATTAAATACCGCCGGGGCTAAAAGAACGAGGGATTATCGGTG
CTGATCGCGGCCGCCAACAACTCGTCGTCGTGCGGGCGCTCGTCCATGGGACGGTCGTCGCGGAT
AAAGTCGTCCAACCGGTACTTGGGGTCGTCGGGCGCCGGCGCCGCGTCGCCATAGAAGAACGGCT
CCGGCAGCGCTCCCAGCAGCTGTTCGGTCTCGAACGGTGCTAGCTGGTCAAACGGCTCCAGCGCC
GGCAGCTGCAGCACCAGCTGTTCTTCAGAGATCAGCGCCACTGCAGCCGCCGCCGCTGCTGCCTG
GGCCTGTTTTTGCGCCCGTTTCAGCGTCCGGGTCTCGCCGCGTTC
Found at i:213471 original size:13 final size:13
Alignment explanation
Indices: 213453--213483 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
213443 TTTCACTTCG
213453 CGTCTCCGCCTCA
1 CGTCTCCGCCTCA
*
213466 CGTCTCCTCCTCA
1 CGTCTCCGCCTCA
213479 CGTCT
1 CGTCT
213484 TTGTTCGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.52, G:0.13, T:0.29
Consensus pattern (13 bp):
CGTCTCCGCCTCA
Left flanking sequence: Indices 212953 -- 213452
CGTTACCTTGAAGCCCGTGTACGACCGTCCCGGTGTGTTTGGGGTGTACCTCACTACTGGTAGTG
AAGAGGACAAGCCGTTGTACAAGCGCAAATTCAACAAGGTGGAGTTGGCGCAGAAGTACGGTGAG
ACCATGGAGGAGGACTACTGGTACGACGGGTTCCCCGATGCCAAGTTTTTGAAGCTTCTCGTAAA
GGACGAGATCGGCGCCGAGGTGGGCCACCATATCAGTGCCCCTACTCCGAACGATAAGTTGACCA
CGGGAAAAAGGGAAGTGAAGGAGAAGCTGGAAAAGGCGGAGGGAGCTACGGACGCATGCATCGAC
TGTCGTAAGGAAAACGAGTAGAAAGAAGAGCAGGTTATAGTATAGTAATAAGGAAACGAAACACA
TTTTTAACACCTTTTCATACACAACCTGGATAAGGAGACCACATGGCAAAGTTAAGGAACTAACA
AATCCTCATATAAAAAGGGTCATCTCTTTCCTCTTTTTCACTTCG
Right flanking sequence: Indices 213484 -- 213983
TTGTTCGTGCTGCAAAAATGCGTACGCATTTTAACAACAAAGCCAACCACACCCCCATGACGGAC
TACTCGTACTCGTTGCCGCCACCCCTGGGCCAGCTGTACTACGGCCACCCGCAGCAGCAGCACCA
GCAGCGTCCCCAGCAGATCCAACAACTGCTGCTGCAACAAATCCCCCAGCAGCAGCAACAACCTC
CCCAACACTCCCAACAACAGCTCCATCAACAACAGCTCCACCAGCAACAGCTTCAGCAGCAACAG
CAGCAAGCCAGACTTCAACAACAACAGCAACAACAACAGCAACAACAGCAGCAGCAACAACAACA
ACAACAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAGC
AGCAGCAACAGCAGGCTCCCATCCTGGTGATTGGGCCTGGTGGAGCTCAGCCACCACCCACCCAG
GCCAGCGGGCTCAACGTCATGCAGAAGTTCTCTCAACAGGACATT
Found at i:213710 original size:15 final size:15
Alignment explanation
Indices: 213689--213744 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
213679 CCCAACACTC
213689 CCAACAACAGCTCCA
1 CCAACAACAGCTCCA
*
213704 TCAACAACAGCTCCA
1 CCAACAACAGCTCCA
* *
213719 CCAGCAACAGCTTCA
1 CCAACAACAGCTCCA
* *
213734 GCAGCAACAGC
1 CCAACAACAGC
213745 AGCAAGCCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.38, C:0.41, G:0.12, T:0.09
Consensus pattern (15 bp):
CCAACAACAGCTCCA
Left flanking sequence: Indices 213189 -- 213688
CTACTCCGAACGATAAGTTGACCACGGGAAAAAGGGAAGTGAAGGAGAAGCTGGAAAAGGCGGAG
GGAGCTACGGACGCATGCATCGACTGTCGTAAGGAAAACGAGTAGAAAGAAGAGCAGGTTATAGT
ATAGTAATAAGGAAACGAAACACATTTTTAACACCTTTTCATACACAACCTGGATAAGGAGACCA
CATGGCAAAGTTAAGGAACTAACAAATCCTCATATAAAAAGGGTCATCTCTTTCCTCTTTTTCAC
TTCGCGTCTCCGCCTCACGTCTCCTCCTCACGTCTTTGTTCGTGCTGCAAAAATGCGTACGCATT
TTAACAACAAAGCCAACCACACCCCCATGACGGACTACTCGTACTCGTTGCCGCCACCCCTGGGC
CAGCTGTACTACGGCCACCCGCAGCAGCAGCACCAGCAGCGTCCCCAGCAGATCCAACAACTGCT
GCTGCAACAAATCCCCCAGCAGCAGCAACAACCTCCCCAACACTC
Right flanking sequence: Indices 213745 -- 214244
AGCAAGCCAGACTTCAACAACAACAGCAACAACAACAGCAACAACAGCAGCAGCAACAACAACAA
CAACAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAGCA
GCAGCAACAGCAGGCTCCCATCCTGGTGATTGGGCCTGGTGGAGCTCAGCCACCACCCACCCAGG
CCAGCGGGCTCAACGTCATGCAGAAGTTCTCTCAACAGGACATTCTGATTTTGCGCCAGCTTCTT
GTCGCTGGCGAGAAGCACAAGTGGAAGCAGATCACCAAGGAGATCAACCTGGCGTCGCCCCACAA
CGCGCAGTTCCGCCAGGGCGAGCTGCAGGGTCAGGTGCTGACCAAGAACGTCAGCCCCACCTTTG
TGATCAAGCAGTACCAGACGTTGTTGGGCCTCCCCAACAATGCCACCTACTTTGGTACTTTGGGA
AGCAGTTTGCCGTACGTGGTGAGCCCCAACGGGTGGGACGACTTG
Found at i:213747 original size:24 final size:24
Alignment explanation
Indices: 213720--213883 Score: 134
Period size: 24 Copynumber: 6.8 Consensus size: 24
213710 ACAGCTCCAC
** *
213720 CAGCAACAGCTTCAGCAGCAACAG
1 CAGCAACAGCAACAGCAACAACAG
** *
213744 CAGC-A-AGCCAGACTTCAACAACAA
1 CAGCAACAG-CA-ACAGCAACAACAG
*
213768 CAGCAACAACAACAGCAACAACAG
1 CAGCAACAGCAACAGCAACAACAG
* * *
213792 CAGCAGCAACAACAACAACAACAG
1 CAGCAACAGCAACAGCAACAACAG
* * * *
213816 CAGCAGCAGCAGCAACAACAACAA
1 CAGCAACAGCAACAGCAACAACAG
* * *
213840 CAGCAGCAGCAGCAGCAACAACAA
1 CAGCAACAGCAACAGCAACAACAG
*
213864 CAGCAACAGCAGCAGCAACA
1 CAGCAACAGCAACAGCAACA
213884 GCAGGCTCCC
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
22 2 0.02
23 2 0.02
24 111 0.93
25 3 0.03
26 1 0.01
ACGTcount: A:0.48, C:0.34, G:0.16, T:0.02
Consensus pattern (24 bp):
CAGCAACAGCAACAGCAACAACAG
Left flanking sequence: Indices 213220 -- 213719
AAGGGAAGTGAAGGAGAAGCTGGAAAAGGCGGAGGGAGCTACGGACGCATGCATCGACTGTCGTA
AGGAAAACGAGTAGAAAGAAGAGCAGGTTATAGTATAGTAATAAGGAAACGAAACACATTTTTAA
CACCTTTTCATACACAACCTGGATAAGGAGACCACATGGCAAAGTTAAGGAACTAACAAATCCTC
ATATAAAAAGGGTCATCTCTTTCCTCTTTTTCACTTCGCGTCTCCGCCTCACGTCTCCTCCTCAC
GTCTTTGTTCGTGCTGCAAAAATGCGTACGCATTTTAACAACAAAGCCAACCACACCCCCATGAC
GGACTACTCGTACTCGTTGCCGCCACCCCTGGGCCAGCTGTACTACGGCCACCCGCAGCAGCAGC
ACCAGCAGCGTCCCCAGCAGATCCAACAACTGCTGCTGCAACAAATCCCCCAGCAGCAGCAACAA
CCTCCCCAACACTCCCAACAACAGCTCCATCAACAACAGCTCCAC
Right flanking sequence: Indices 213884 -- 214383
GCAGGCTCCCATCCTGGTGATTGGGCCTGGTGGAGCTCAGCCACCACCCACCCAGGCCAGCGGGC
TCAACGTCATGCAGAAGTTCTCTCAACAGGACATTCTGATTTTGCGCCAGCTTCTTGTCGCTGGC
GAGAAGCACAAGTGGAAGCAGATCACCAAGGAGATCAACCTGGCGTCGCCCCACAACGCGCAGTT
CCGCCAGGGCGAGCTGCAGGGTCAGGTGCTGACCAAGAACGTCAGCCCCACCTTTGTGATCAAGC
AGTACCAGACGTTGTTGGGCCTCCCCAACAATGCCACCTACTTTGGTACTTTGGGAAGCAGTTTG
CCGTACGTGGTGAGCCCCAACGGGTGGGACGACTTGAACTACCAGGAGTTCCACCACAACTTCAA
CAACGACTTGGAGTAAGCCCTCGGGCCGGCGTTTTTGTTTTTATGTAACAGTAGAGGGACGGAGC
GTACCAATGGCGATGAGCCTGGGGCTCGTGGATGAGCACCCGAGA
Found at i:213765 original size:3 final size:3
Alignment explanation
Indices: 213759--213871 Score: 82
Period size: 3 Copynumber: 37.7 Consensus size: 3
213749 AGCCAGACTT
* * * * *
213759 CAA CAA CAA CAG CAA CAA CAA CAG CAA CAA CAG CAG CAG CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
* * * * * * * * * *
213807 CAA CAA CAG CAG CAG CAG CAG CAA CAA CAA CAA CAG CAG CAG CAG CAG
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
*
213855 CAA CAA CAA CAG CAA CA
1 CAA CAA CAA CAA CAA CA
213872 GCAGCAGCAA
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 98 1.00
ACGTcount: A:0.52, C:0.34, G:0.14, T:0.00
Consensus pattern (3 bp):
CAA
Left flanking sequence: Indices 213259 -- 213758
TACGGACGCATGCATCGACTGTCGTAAGGAAAACGAGTAGAAAGAAGAGCAGGTTATAGTATAGT
AATAAGGAAACGAAACACATTTTTAACACCTTTTCATACACAACCTGGATAAGGAGACCACATGG
CAAAGTTAAGGAACTAACAAATCCTCATATAAAAAGGGTCATCTCTTTCCTCTTTTTCACTTCGC
GTCTCCGCCTCACGTCTCCTCCTCACGTCTTTGTTCGTGCTGCAAAAATGCGTACGCATTTTAAC
AACAAAGCCAACCACACCCCCATGACGGACTACTCGTACTCGTTGCCGCCACCCCTGGGCCAGCT
GTACTACGGCCACCCGCAGCAGCAGCACCAGCAGCGTCCCCAGCAGATCCAACAACTGCTGCTGC
AACAAATCCCCCAGCAGCAGCAACAACCTCCCCAACACTCCCAACAACAGCTCCATCAACAACAG
CTCCACCAGCAACAGCTTCAGCAGCAACAGCAGCAAGCCAGACTT
Right flanking sequence: Indices 213872 -- 214371
GCAGCAGCAACAGCAGGCTCCCATCCTGGTGATTGGGCCTGGTGGAGCTCAGCCACCACCCACCC
AGGCCAGCGGGCTCAACGTCATGCAGAAGTTCTCTCAACAGGACATTCTGATTTTGCGCCAGCTT
CTTGTCGCTGGCGAGAAGCACAAGTGGAAGCAGATCACCAAGGAGATCAACCTGGCGTCGCCCCA
CAACGCGCAGTTCCGCCAGGGCGAGCTGCAGGGTCAGGTGCTGACCAAGAACGTCAGCCCCACCT
TTGTGATCAAGCAGTACCAGACGTTGTTGGGCCTCCCCAACAATGCCACCTACTTTGGTACTTTG
GGAAGCAGTTTGCCGTACGTGGTGAGCCCCAACGGGTGGGACGACTTGAACTACCAGGAGTTCCA
CCACAACTTCAACAACGACTTGGAGTAAGCCCTCGGGCCGGCGTTTTTGTTTTTATGTAACAGTA
GAGGGACGGAGCGTACCAATGGCGATGAGCCTGGGGCTCGTGGAT
Found at i:213873 original size:27 final size:27
Alignment explanation
Indices: 213768--213883 Score: 178
Period size: 27 Copynumber: 4.3 Consensus size: 27
213758 TCAACAACAA
* *
213768 CAGCAACAACAACAGCAACAACAGCAG
1 CAGCAACAACAACAACAACAGCAGCAG
213795 CAGCAACAACAACAACAACAGCAGCAG
1 CAGCAACAACAACAACAACAGCAGCAG
*
213822 CAGCAGCAACAACAACAACAGCAGCAG
1 CAGCAACAACAACAACAACAGCAGCAG
* * *
213849 CAGCAGCAACAACAACAGCAACAGCAG
1 CAGCAACAACAACAACAACAGCAGCAG
213876 CAGCAACA
1 CAGCAACA
213884 GCAGGCTCCC
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.50, C:0.34, G:0.16, T:0.00
Consensus pattern (27 bp):
CAGCAACAACAACAACAACAGCAGCAG
Left flanking sequence: Indices 213268 -- 213767
ATGCATCGACTGTCGTAAGGAAAACGAGTAGAAAGAAGAGCAGGTTATAGTATAGTAATAAGGAA
ACGAAACACATTTTTAACACCTTTTCATACACAACCTGGATAAGGAGACCACATGGCAAAGTTAA
GGAACTAACAAATCCTCATATAAAAAGGGTCATCTCTTTCCTCTTTTTCACTTCGCGTCTCCGCC
TCACGTCTCCTCCTCACGTCTTTGTTCGTGCTGCAAAAATGCGTACGCATTTTAACAACAAAGCC
AACCACACCCCCATGACGGACTACTCGTACTCGTTGCCGCCACCCCTGGGCCAGCTGTACTACGG
CCACCCGCAGCAGCAGCACCAGCAGCGTCCCCAGCAGATCCAACAACTGCTGCTGCAACAAATCC
CCCAGCAGCAGCAACAACCTCCCCAACACTCCCAACAACAGCTCCATCAACAACAGCTCCACCAG
CAACAGCTTCAGCAGCAACAGCAGCAAGCCAGACTTCAACAACAA
Right flanking sequence: Indices 213884 -- 214383
GCAGGCTCCCATCCTGGTGATTGGGCCTGGTGGAGCTCAGCCACCACCCACCCAGGCCAGCGGGC
TCAACGTCATGCAGAAGTTCTCTCAACAGGACATTCTGATTTTGCGCCAGCTTCTTGTCGCTGGC
GAGAAGCACAAGTGGAAGCAGATCACCAAGGAGATCAACCTGGCGTCGCCCCACAACGCGCAGTT
CCGCCAGGGCGAGCTGCAGGGTCAGGTGCTGACCAAGAACGTCAGCCCCACCTTTGTGATCAAGC
AGTACCAGACGTTGTTGGGCCTCCCCAACAATGCCACCTACTTTGGTACTTTGGGAAGCAGTTTG
CCGTACGTGGTGAGCCCCAACGGGTGGGACGACTTGAACTACCAGGAGTTCCACCACAACTTCAA
CAACGACTTGGAGTAAGCCCTCGGGCCGGCGTTTTTGTTTTTATGTAACAGTAGAGGGACGGAGC
GTACCAATGGCGATGAGCCTGGGGCTCGTGGATGAGCACCCGAGA
Found at i:213876 original size:3 final size:3
Alignment explanation
Indices: 213789--213887 Score: 72
Period size: 3 Copynumber: 33.0 Consensus size: 3
213779 ACAGCAACAA
* * * * * * * *
213789 CAG CAG CAG CAA CAA CAA CAA CAA CAG CAG CAG CAG CAG CAA CAA CAA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
* * * * * *
213837 CAA CAG CAG CAG CAG CAG CAA CAA CAA CAG CAA CAG CAG CAG CAA CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
213885 CAG
1 CAG
213888 GCTCCCATCC
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.47, C:0.33, G:0.19, T:0.00
Consensus pattern (3 bp):
CAG
Left flanking sequence: Indices 213289 -- 213788
AAACGAGTAGAAAGAAGAGCAGGTTATAGTATAGTAATAAGGAAACGAAACACATTTTTAACACC
TTTTCATACACAACCTGGATAAGGAGACCACATGGCAAAGTTAAGGAACTAACAAATCCTCATAT
AAAAAGGGTCATCTCTTTCCTCTTTTTCACTTCGCGTCTCCGCCTCACGTCTCCTCCTCACGTCT
TTGTTCGTGCTGCAAAAATGCGTACGCATTTTAACAACAAAGCCAACCACACCCCCATGACGGAC
TACTCGTACTCGTTGCCGCCACCCCTGGGCCAGCTGTACTACGGCCACCCGCAGCAGCAGCACCA
GCAGCGTCCCCAGCAGATCCAACAACTGCTGCTGCAACAAATCCCCCAGCAGCAGCAACAACCTC
CCCAACACTCCCAACAACAGCTCCATCAACAACAGCTCCACCAGCAACAGCTTCAGCAGCAACAG
CAGCAAGCCAGACTTCAACAACAACAGCAACAACAACAGCAACAA
Right flanking sequence: Indices 213888 -- 214387
GCTCCCATCCTGGTGATTGGGCCTGGTGGAGCTCAGCCACCACCCACCCAGGCCAGCGGGCTCAA
CGTCATGCAGAAGTTCTCTCAACAGGACATTCTGATTTTGCGCCAGCTTCTTGTCGCTGGCGAGA
AGCACAAGTGGAAGCAGATCACCAAGGAGATCAACCTGGCGTCGCCCCACAACGCGCAGTTCCGC
CAGGGCGAGCTGCAGGGTCAGGTGCTGACCAAGAACGTCAGCCCCACCTTTGTGATCAAGCAGTA
CCAGACGTTGTTGGGCCTCCCCAACAATGCCACCTACTTTGGTACTTTGGGAAGCAGTTTGCCGT
ACGTGGTGAGCCCCAACGGGTGGGACGACTTGAACTACCAGGAGTTCCACCACAACTTCAACAAC
GACTTGGAGTAAGCCCTCGGGCCGGCGTTTTTGTTTTTATGTAACAGTAGAGGGACGGAGCGTAC
CAATGGCGATGAGCCTGGGGCTCGTGGATGAGCACCCGAGATGTG
Found at i:214528 original size:15 final size:15
Alignment explanation
Indices: 214487--214536 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
214477 ACTGGGTTTC
* *
214487 ACTGGGAATCAACCG
1 ACTGAGAATCAGCCG
214502 ACTGAGAATCAGCCG
1 ACTGAGAATCAGCCG
*
214517 ACTGAGAATCAGCCT
1 ACTGAGAATCAGCCG
214532 ACTGA
1 ACTGA
214537 ACATTCAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (15 bp):
ACTGAGAATCAGCCG
Left flanking sequence: Indices 213987 -- 214486
ATTTTGCGCCAGCTTCTTGTCGCTGGCGAGAAGCACAAGTGGAAGCAGATCACCAAGGAGATCAA
CCTGGCGTCGCCCCACAACGCGCAGTTCCGCCAGGGCGAGCTGCAGGGTCAGGTGCTGACCAAGA
ACGTCAGCCCCACCTTTGTGATCAAGCAGTACCAGACGTTGTTGGGCCTCCCCAACAATGCCACC
TACTTTGGTACTTTGGGAAGCAGTTTGCCGTACGTGGTGAGCCCCAACGGGTGGGACGACTTGAA
CTACCAGGAGTTCCACCACAACTTCAACAACGACTTGGAGTAAGCCCTCGGGCCGGCGTTTTTGT
TTTTATGTAACAGTAGAGGGACGGAGCGTACCAATGGCGATGAGCCTGGGGCTCGTGGATGAGCA
CCCGAGATGTGTCTGGTCCCCGGCCCTCTCGCAATAGCGGGCATGTCCCTAATAGGTAATGAAGA
TAACCAGAGTTAACTAAGCTACTGATATCCAACCTACTGGGTTTC
Right flanking sequence: Indices 214537 -- 215036
ACATTCAGCTACAAAATTCAAGTGTTCCCTTCACCCAACGTTTCTCCTATGCTATGTCGTTTCTC
GTAAATGCTATATATTGTTAATCCATAATCACTTGGGATGTCCAAAATGTATGCTACCACCCATT
GTCCCGGGCCACCACGGGCCCCGGGTTGACTCGCGACGTCTTGGCTCGCTTCTTCACGGGCAGCC
CGCCTGGCAGCACCGACACGTCGCCCAGGTCGAGTGTCACCACCGAGCCAATCTTCTCAATCAAC
CGGAGCACGTTGGCCATCGTGGGGGCCCGGGCAAGCGTAGGCTTCAGGCCCACAACCACCAACTT
GACCTTGGCCCGGGAAAACGCCACGTTGAGCCGGCGCCACTCGCGCACCAAGTCTCCAGCCAGCC
CGTCGTCGTTCGAGCGGGCCATCAGCACAATCACCACCTCCTTCTCGCGCCCCTGGTACTGGTCG
GCCGTCAACACCTCGAGGTTGTTGAACGGGGCCACCGCTCGCTGC
Found at i:220519 original size:9 final size:9
Alignment explanation
Indices: 220505--220636 Score: 210
Period size: 9 Copynumber: 14.7 Consensus size: 9
220495 GAAGCCCGCC
220505 AAGAAGGAG
1 AAGAAGGAG
*
220514 AAGAAGGAC
1 AAGAAGGAG
220523 AAGAAGGAG
1 AAGAAGGAG
220532 AAGAAGGAG
1 AAGAAGGAG
*
220541 AAGAAGGAA
1 AAGAAGGAG
*
220550 AAGAAGGAA
1 AAGAAGGAG
220559 AAGAAGGAG
1 AAGAAGGAG
220568 AAGAAGGAG
1 AAGAAGGAG
220577 AAGAAGGAG
1 AAGAAGGAG
*
220586 AAGAAGGAA
1 AAGAAGGAG
*
220595 AAGAAGGAA
1 AAGAAGGAG
*
220604 AAGAAGGAC
1 AAGAAGGAG
220613 AAGAAGGAG
1 AAGAAGGAG
220622 AAGAAGGAG
1 AAGAAGGAG
220631 AAGAAG
1 AAGAAG
220637 TAAAAGGCAT
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 116 1.00
ACGTcount: A:0.59, C:0.02, G:0.39, T:0.00
Consensus pattern (9 bp):
AAGAAGGAG
Left flanking sequence: Indices 220005 -- 220504
CTCGTCTCATTGCCCACGCTGGCTCGTTGACGTCATTGGCCAAGGCCCCCGCCCTGACCATCCAG
ATCCTTGGTGCTGAGAAGGCGCTTTTCCGTGCGTTGAAGACCAAGCACGACACCCCCAAGTACGG
TTTGTTGTACCACGCTTCGTTGGTGGGCCAGGCTACCGGTAAGAACAAGGGTAAGATCGCCCGTG
TGCTTGCTGCCAAGGCTGCCGTCTCCATCAGATACGACTGTCTTGCCGACGACCGTGACGACTCG
GGCTCTTTTGGCTCTGACATGCGCGGCAAGGTCGAGCTGAGATTGCTGGCGATGGAGGGCCGTGA
CTTGAGAACCACCAAGGTCCAGAGAGGTGCCCAGAAGGTGGAGATCTCTGAGGCCAGAGCCTACA
ACGCCGACGCCGACGCTGCCATGGACTCTGACGACGAGTCTGACGCTGAGGAGGAGTCCAAGAAG
CGCAAGCGCGACGACTCTGACGAGGAGGAGGAGGAGAAGCCCGCC
Right flanking sequence: Indices 220637 -- 221136
TAAAAGGCATCCGCCCATCCATCCGTTTCATGTACAGTAGTTAACTCATTTAGAAAATCAACGAT
AATCGAACTTGTCTAGGTCATGCTGTCTTAGTAATGGCCCCGGGCTGTCTTCACATTTTACGAGC
CGCGCGCTCGTAACCGGGGTTACCACGAATTACCCCGTATCGTATCTGCCCGAACGTTAGCACTT
CTTGGCGTGCGAGCGCGGGGTACTGTAACGCTGGCTTTGTCCGGGTGGAACTGCCGTGGCCACCT
TGCTTCGCTCGCTGTCCCATCGATCATCATTTGCGCACCCTCGGGTTGCCAGTTGCTTTTTGATT
TGCTCCCGCTTATTTATGGTAGGTCGTGTCTAGTGGCGTATCTGAGATCGCAGAAAGCAATCATG
CATTACATCTAGCAGGTGATCAGTAGACTAGACCGATTGTATAGCAACTTGGCGCCCGGGTAGCC
CGATATGGGACTTGCGTTGTTAACTTTAGACGGGCACTTACCCAA
Found at i:220531 original size:45 final size:45
Alignment explanation
Indices: 220505--220642 Score: 249
Period size: 45 Copynumber: 3.1 Consensus size: 45
220495 GAAGCCCGCC
*
220505 AAGAAGGAGAAGAAGGACAAGAAGGAGAAGAAGGAGAAGAAGGAA
1 AAGAAGGAAAAGAAGGACAAGAAGGAGAAGAAGGAGAAGAAGGAA
*
220550 AAGAAGGAAAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAA
1 AAGAAGGAAAAGAAGGACAAGAAGGAGAAGAAGGAGAAGAAGGAA
*
220595 AAGAAGGAAAAGAAGGACAAGAAGGAGAAGAAGGAGAAGAAGTAA
1 AAGAAGGAAAAGAAGGACAAGAAGGAGAAGAAGGAGAAGAAGGAA
220640 AAG
1 AAG
220643 GCATCCGCCC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.59, C:0.01, G:0.38, T:0.01
Consensus pattern (45 bp):
AAGAAGGAAAAGAAGGACAAGAAGGAGAAGAAGGAGAAGAAGGAA
Left flanking sequence: Indices 220005 -- 220504
CTCGTCTCATTGCCCACGCTGGCTCGTTGACGTCATTGGCCAAGGCCCCCGCCCTGACCATCCAG
ATCCTTGGTGCTGAGAAGGCGCTTTTCCGTGCGTTGAAGACCAAGCACGACACCCCCAAGTACGG
TTTGTTGTACCACGCTTCGTTGGTGGGCCAGGCTACCGGTAAGAACAAGGGTAAGATCGCCCGTG
TGCTTGCTGCCAAGGCTGCCGTCTCCATCAGATACGACTGTCTTGCCGACGACCGTGACGACTCG
GGCTCTTTTGGCTCTGACATGCGCGGCAAGGTCGAGCTGAGATTGCTGGCGATGGAGGGCCGTGA
CTTGAGAACCACCAAGGTCCAGAGAGGTGCCCAGAAGGTGGAGATCTCTGAGGCCAGAGCCTACA
ACGCCGACGCCGACGCTGCCATGGACTCTGACGACGAGTCTGACGCTGAGGAGGAGTCCAAGAAG
CGCAAGCGCGACGACTCTGACGAGGAGGAGGAGGAGAAGCCCGCC
Right flanking sequence: Indices 220643 -- 221142
GCATCCGCCCATCCATCCGTTTCATGTACAGTAGTTAACTCATTTAGAAAATCAACGATAATCGA
ACTTGTCTAGGTCATGCTGTCTTAGTAATGGCCCCGGGCTGTCTTCACATTTTACGAGCCGCGCG
CTCGTAACCGGGGTTACCACGAATTACCCCGTATCGTATCTGCCCGAACGTTAGCACTTCTTGGC
GTGCGAGCGCGGGGTACTGTAACGCTGGCTTTGTCCGGGTGGAACTGCCGTGGCCACCTTGCTTC
GCTCGCTGTCCCATCGATCATCATTTGCGCACCCTCGGGTTGCCAGTTGCTTTTTGATTTGCTCC
CGCTTATTTATGGTAGGTCGTGTCTAGTGGCGTATCTGAGATCGCAGAAAGCAATCATGCATTAC
ATCTAGCAGGTGATCAGTAGACTAGACCGATTGTATAGCAACTTGGCGCCCGGGTAGCCCGATAT
GGGACTTGCGTTGTTAACTTTAGACGGGCACTTACCCAATGCAGT
Done.