sallet_2.scaffold.fasta.s77.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold81
Parameters: 2 7 7 80 10 50 500
Length:  327205

Tables:   1   2   

This is table  1  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14849--14896	16	2.9	16	78	6	60	29	22	12	35	1.91
16137--16172	11	3.3	11	92	0	54	22	30	0	47	1.52
16165--16251	41	2.1	42	89	2	131	29	28	8	33	1.86
18062--18124	19	3.3	18	75	16	56	33	15	36	14	1.88
18048--18122	38	2.0	38	84	5	98	32	16	37	14	1.89
18152--18214	15	3.5	19	77	16	71	41	17	25	15	1.89
19348--19386	10	3.9	10	100	0	78	10	61	0	28	1.28
19581--19653	10	7.3	10	71	28	50	31	56	10	1	1.43
19597--19653	24	2.4	24	86	13	82	33	56	10	0	1.34
19556--19630	17	4.3	18	78	14	68	26	56	13	4	1.55
20394--20440	16	2.9	16	90	0	76	29	19	42	8	1.80
20564--20615	11	4.6	11	83	9	61	15	25	48	11	1.78
20564--20615	23	2.3	22	81	12	61	15	25	48	11	1.78
20574--20616	23	1.9	22	95	4	77	13	23	53	9	1.69
24295--24320	10	2.6	10	100	0	52	0	0	57	42	0.98
24579--24619	15	2.7	15	96	0	73	0	14	48	36	1.44
25728--25765	12	3.2	12	88	0	58	15	5	44	34	1.69
25732--25790	30	2.0	30	86	3	84	13	5	49	32	1.64
26213--26275	25	2.6	24	82	9	76	38	57	0	4	1.20
27765--27806	13	3.1	13	93	6	66	50	11	30	7	1.66
27876--27933	20	3.0	20	80	9	66	3	0	63	32	1.11
27873--27940	22	3.1	22	79	8	77	2	0	64	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27937--27972	1	36.0	1	94	0	63	0	0	97	0	0.04
28087--28122	17	2.1	17	89	0	54	11	8	47	33	1.69
28459--28488	13	2.4	13	94	5	53	6	16	40	36	1.75
28641--28674	13	2.6	13	85	0	50	17	11	35	35	1.87
28798--28887	12	7.2	13	74	12	55	23	6	41	28	1.80
28846--28890	12	3.8	12	93	0	72	24	8	37	28	1.86
29529--29574	21	2.2	20	84	3	56	45	2	39	13	1.55
30295--30402	23	4.7	23	90	0	126	29	33	1	35	1.69
30272--30402	12	11.2	12	63	15	60	29	33	1	35	1.67
30425--30451	11	2.5	11	100	0	54	40	37	0	22	1.54
30515--30542	10	2.8	10	100	0	56	32	32	25	10	1.90
30931--30972	13	3.3	13	80	6	59	0	16	40	42	1.48
32144--32205	16	3.9	16	84	0	88	30	0	20	48	1.50
32538--32579	12	3.5	12	87	6	59	14	21	47	16	1.82
32945--32975	12	2.6	12	100	0	62	22	32	25	19	1.97
33892--33945	11	4.9	11	95	4	92	11	9	44	35	1.72
34574--34614	21	1.9	22	85	5	57	21	24	4	48	1.69
36380--36417	15	2.5	15	95	0	67	5	15	44	34	1.69
36741--36790	2	24.5	2	91	4	82	48	0	50	2	1.12
36771--36945	11	14.1	13	75	17	94	42	9	37	10	1.72
36876--36942	11	6.2	11	91	1	109	41	8	40	8	1.68
37190--37296	25	4.3	25	81	9	119	19	36	9	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37616--37703	15	5.9	15	77	16	76	34	28	27	10	1.89
37640--37699	13	4.2	13	73	19	57	30	28	30	11	1.92
37690--37733	9	4.9	9	94	0	79	31	31	34	2	1.70
37741--37914	12	14.7	12	78	2	154	12	16	28	42	1.84
38192--38252	9	6.7	9	81	3	68	39	22	14	22	1.91
38319--38352	9	3.7	9	88	4	50	47	26	17	8	1.77
38365--38462	10	10.2	10	85	12	100	37	37	12	12	1.80
38569--38759	18	11.0	17	85	8	192	46	25	10	17	1.81
38569--38766	36	5.7	35	87	7	219	45	25	10	18	1.81
38581--38749	18	9.7	18	90	2	215	47	26	8	17	1.76
39839--39905	26	2.6	25	86	9	73	32	0	58	8	1.29
39852--39905	12	4.2	13	79	13	67	31	0	57	11	1.34
39918--39981	3	23.0	3	72	15	57	3	0	59	37	1.13
39919--39979	16	4.1	15	85	14	74	3	0	59	37	1.14
39918--39981	11	5.8	12	80	9	57	3	0	59	37	1.13
39975--40022	25	1.9	25	86	0	69	18	2	35	43	1.62
40016--40092	20	3.8	20	87	0	109	14	2	38	44	1.59
40025--40082	10	5.8	10	83	0	80	12	1	43	43	1.52
39984--40094	10	11.6	10	76	7	70	16	2	36	44	1.62
39999--40094	30	3.2	30	76	1	95	16	3	36	43	1.64
40096--40160	11	5.7	12	89	5	57	10	9	36	43	1.72
40110--40160	11	4.5	11	95	2	84	9	9	37	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40754--40788	14	2.4	14	90	4	52	34	0	57	8	1.29
40762--40792	14	2.2	14	100	0	62	29	0	58	12	1.35
40794--40844	10	5.3	10	88	6	79	37	1	50	9	1.47
41245--41293	20	2.5	20	86	0	62	18	32	20	28	1.96
41530--41566	13	2.8	13	100	0	74	8	40	27	24	1.83
41756--41848	11	8.8	11	98	1	158	18	0	43	38	1.50
42078--42103	11	2.4	11	100	0	52	23	7	57	11	1.59
42203--42239	16	2.3	16	100	0	74	18	16	37	27	1.92
42233--42265	12	2.8	12	95	4	59	33	9	39	18	1.82
42397--42440	11	4.0	11	78	0	52	22	29	36	11	1.89
42403--42445	22	1.9	23	85	4	61	27	25	34	11	1.91
42639--42686	20	2.4	20	96	0	87	25	45	6	22	1.75
42794--42839	20	2.3	20	96	0	83	28	39	21	10	1.87
43050--43105	11	5.1	11	100	0	112	8	44	17	28	1.79
43050--43113	22	3.0	22	95	2	112	7	45	17	29	1.76
43050--43113	33	2.0	32	93	3	110	7	45	17	29	1.76
46178--46214	9	4.1	9	92	0	65	40	10	37	10	1.75
46591--46768	9	20.2	9	84	2	211	23	8	33	34	1.86
47162--47207	14	3.2	14	93	3	74	8	69	0	21	1.15
48072--48096	12	2.1	12	100	0	50	40	0	44	16	1.47
48090--48154	9	7.6	9	80	13	57	27	6	46	20	1.74
48360--48400	19	2.0	21	90	9	68	19	29	19	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48458--48483	11	2.4	11	100	0	52	26	42	19	11	1.85
49561--49670	37	3.0	37	81	7	136	18	30	26	24	1.98
50242--50300	19	3.1	18	78	11	64	3	1	52	42	1.28
50260--50299	21	1.9	21	89	0	62	0	2	55	42	1.13
50242--50300	2	28.5	2	80	13	57	3	1	52	42	1.28
51896--51921	11	2.4	11	100	0	52	26	19	46	7	1.77
55283--55307	12	2.1	12	100	0	50	8	44	24	24	1.80
55701--55739	19	2.1	19	90	9	62	15	2	48	33	1.58
56789--56821	17	1.9	17	93	0	57	12	33	21	33	1.90
57732--57778	11	4.3	11	83	0	58	12	53	6	27	1.63
58276--58330	21	2.6	21	94	0	92	7	63	21	7	1.44
59630--59680	15	3.4	15	84	10	52	52	0	47	0	1.00
59864--59903	21	1.9	21	94	0	71	17	37	22	22	1.94
59904--59946	15	2.9	15	100	0	86	13	60	11	13	1.59
62274--62431	10	15.8	10	84	6	162	27	44	0	27	1.55
62405--62435	10	3.1	10	95	0	53	29	48	0	22	1.51
63720--63757	10	3.9	10	82	6	51	21	7	34	36	1.82
63757--63787	13	2.4	13	100	0	62	19	16	29	35	1.93
64037--64125	18	4.9	18	84	0	106	28	10	37	24	1.88
65198--65225	13	2.2	13	100	0	56	7	42	25	25	1.80
65228--65266	11	3.6	11	89	6	62	12	38	2	46	1.56
65553--65577	9	2.8	9	100	0	50	32	44	0	24	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65739--65777	16	2.5	16	95	4	71	20	58	5	15	1.55
66243--66278	17	2.1	17	94	0	63	5	52	11	30	1.59
66243--66292	17	3.2	16	80	11	59	6	54	12	28	1.60
66972--67008	9	4.1	9	89	0	56	5	0	72	21	1.04
66969--67008	18	2.3	17	87	8	62	5	0	72	22	1.04
67014--67062	21	2.3	21	82	3	62	20	20	28	30	1.98
67014--67062	11	4.5	11	84	5	55	20	20	28	30	1.98
67778--67842	16	4.2	16	77	11	64	23	30	23	23	1.99
68071--68133	14	4.6	14	88	4	74	30	55	0	14	1.39
71512--71536	11	2.3	11	100	0	50	0	16	48	36	1.46

Tables:   1   2