Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold81
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 327205
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:14870 original size:16 final size:16
Alignment explanation
Indices: 14849--14896 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
14839 TACCACATCT
14849 GGCTTATATCCTCAAC
1 GGCTTATATCCTCAAC
* * *
14865 GGCTTATAATCATTAAT
1 GGCTTAT-ATCCTCAAC
14882 GGCTTATATCCTCAA
1 GGCTTATATCCTCAA
14897 AAACCATCGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (16 bp):
GGCTTATATCCTCAAC
Left flanking sequence: Indices 14349 -- 14848
GCCGTCGTAGAGAAGGTTTAATGAACAAGAGATGATTGAAAAGAGATCGTAGGCGAATGAATGGG
ATTGAAACGGGTGATGGGATAGGAGAGGAACTTTTGACAAGTGGACTGTCAAGCTGTTCTAACAC
TCGATGTACTTCGTAGTTTTGCTAATTCTGACAAAAATCTACTATCACGTAGTATTTTATTCTCA
TGCTACCACAGTAAATGACCATGAAGCTTTTCCCTCCTATTTTCCCTCTGTTTCCCTCCCACCCT
CCTTCCATTCGCTTCCATCTTCCCCGCTCGTCTAACCCCTATCTAGTCACGCTAAATATAACGCG
TCTTCCTGACATTCTCCTTATTGAGAAATCTCACTTGAGCAAGGTGCATTAAGGTAATTCACATT
GATCCTCATCCAGCTAACTGGCGTTTCCCATTTAATTCTTTTATAACTGGCTTATAGGACTGTTT
TATAATCATTACAGCTTATAGCTCACCTGGCTTATTACCACATCT
Right flanking sequence: Indices 14897 -- 15396
AAACCATCGCTTTCAGCCTAGTCCCTACGCTCTCGCCGTCCTGTTCGTCATTTATTTATGCTATG
AGATGAATTACTGCTGGTCACGCTTGGCCAAGAACTGCTCGGTAATCTTTTTGTCCTTCGTGGCG
CCGGTGTAGATCGGGTTCTCCTTCAAGTGGATCTGGGCCTCGGGACCGGGGATCTTCTTTTCAAG
CTTCAAGTTGTCAAACACACACTTGTTGAACACCTTCTCCAGGGCACGGCAGTGGCCCTGGCGGT
GGTTTTCCGTCTCCAAACACTCGTAGTGCAATTTGAACTCGTCGAAGCAGTGGGTGTTGATGTCC
TTGAGCACCTGGACAGCGCAACGGGTGACACGACGGCCCTCCTTCAAACAGTCAAGCTCGCCGCC
GTTGTTCTCCTGCTTGCACATCAAAAAGTCGTCCCCGTAGGGCTGGCAGCGGGCACCAATGAAGT
ACGCCGCCAGCAAAAGCGGCGCCAGGGTGGCACCGACTTCGTCGA
Found at i:16153 original size:11 final size:11
Alignment explanation
Indices: 16137--16172 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
16127 ACACAGACGA
*
16137 TCTTAATCTTC
1 TCTTAATCTAC
16148 TCTTAATCTAC
1 TCTTAATCTAC
*
16159 TCTCAATCTAC
1 TCTTAATCTAC
16170 TCT
1 TCT
16173 CAAACGCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (11 bp):
TCTTAATCTAC
Left flanking sequence: Indices 15637 -- 16136
CAGGTTGGGGTTGGGGTCTTTTCTTGTGTGTATTTTGGGGGATTGGGCGTGTTTGGTGGTGGTGT
TCCTGAAGGTATGCGCTACCAGTTTGAGAAGACGGTGGTTGGTTCCGACGAAGTAGTTGTAGACC
TGGCTGCGACTGGAGCAAACAAGTGGGTGGATGGGACGACCAAGAGTAACACCAGCAGATCACTT
AGCGTTTGCCTGGTTGTGGAAAGCGTAATGAACTACGGAGGTTACCGTGGGACCAAACTGTCCCC
ACAAACCATTCAGAAGCGGTCTTCACAGTAGCAAAACAATCAAACCAAAGCAGAACGAACTGCCT
TTAACACCTACACAGCCTTTTAGGCCAATTTCCCCTCTGCTATCCAACTACTTCTCTACTCAGTA
CTCGCTTTGCAATTGGTTGCCATTTATTGGCTGGACACATGCAGGCTCCTGCACACTCCCCGAAA
TGGCTGCGAAATTGCAACCTACTGTGAAGATGTCCACACAGACGA
Right flanking sequence: Indices 16173 -- 16672
CAAACGCTTAACAAAGCCTAGCGTCACTTCTATTTCTACTCTTAAACGCTTAAAAAGCCTAACGT
TACTTCTATCTCTAGAGCTCAGTGGGCACCGCGCAACCGCGCCAAGTCAACCAACCGGTTGAAGT
TAGCACCCAATGCGTACCACAGCTGGACGCCCGCGATAATCACAAGCGCAGCAACACACCCGGCC
CACAACCCCTCCAAGTTGCCCTTCCACGGCGAGTAGAACGTGAGCCAGATCGAGAGCGGAAGCCC
CACCACGTAGTAGGCAAACAAGTTGACGATGCCACCAACCTTGGTCTGGCCCTGGCCACGCAAGC
ACCCGGCCAGCACCGCGTTCATCGCGTCCACCACCTGCATCAACGCAATGAGCCAGATGACGTTG
TGGAGCACCTCGATCACCTGCTCGTCGTCGGTGAAGAGCGCGGCAATGGGCCACCGGAAGTAGAA
CACAAGCGCCCAGTTGAACGCAGCCACGCAAAGACCAGAGCCAAG
Found at i:16243 original size:41 final size:42
Alignment explanation
Indices: 16165--16251 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 42
16155 CTACTCTCAA
* *
16165 TCTACTCTCAAACGCTTAACAAAGCCTAGCGTCACTTCTATT
1 TCTACTCTCAAACGCTTAACAAAGCCTAACGTCACTTCTATC
* *
16207 TCTACTCTTAAACGCTTAA-AAAGCCTAACGTTACTTCTATC
1 TCTACTCTCAAACGCTTAACAAAGCCTAACGTCACTTCTATC
16248 TCTA
1 TCTA
16252 GAGCTCAGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 23 0.56
42 18 0.44
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (42 bp):
TCTACTCTCAAACGCTTAACAAAGCCTAACGTCACTTCTATC
Left flanking sequence: Indices 15665 -- 16164
TGTATTTTGGGGGATTGGGCGTGTTTGGTGGTGGTGTTCCTGAAGGTATGCGCTACCAGTTTGAG
AAGACGGTGGTTGGTTCCGACGAAGTAGTTGTAGACCTGGCTGCGACTGGAGCAAACAAGTGGGT
GGATGGGACGACCAAGAGTAACACCAGCAGATCACTTAGCGTTTGCCTGGTTGTGGAAAGCGTAA
TGAACTACGGAGGTTACCGTGGGACCAAACTGTCCCCACAAACCATTCAGAAGCGGTCTTCACAG
TAGCAAAACAATCAAACCAAAGCAGAACGAACTGCCTTTAACACCTACACAGCCTTTTAGGCCAA
TTTCCCCTCTGCTATCCAACTACTTCTCTACTCAGTACTCGCTTTGCAATTGGTTGCCATTTATT
GGCTGGACACATGCAGGCTCCTGCACACTCCCCGAAATGGCTGCGAAATTGCAACCTACTGTGAA
GATGTCCACACAGACGATCTTAATCTTCTCTTAATCTACTCTCAA
Right flanking sequence: Indices 16252 -- 16751
GAGCTCAGTGGGCACCGCGCAACCGCGCCAAGTCAACCAACCGGTTGAAGTTAGCACCCAATGCG
TACCACAGCTGGACGCCCGCGATAATCACAAGCGCAGCAACACACCCGGCCCACAACCCCTCCAA
GTTGCCCTTCCACGGCGAGTAGAACGTGAGCCAGATCGAGAGCGGAAGCCCCACCACGTAGTAGG
CAAACAAGTTGACGATGCCACCAACCTTGGTCTGGCCCTGGCCACGCAAGCACCCGGCCAGCACC
GCGTTCATCGCGTCCACCACCTGCATCAACGCAATGAGCCAGATGACGTTGTGGAGCACCTCGAT
CACCTGCTCGTCGTCGGTGAAGAGCGCGGCAATGGGCCACCGGAAGTAGAACACAAGCGCCCAGT
TGAACGCAGCCACGCAAAGACCAGAGCCAAGAGCCACCAGGGTGGCCCGCTTGGCGTTGGGAGCC
AAACCAGCCCCCAAGTAGTTGGCGATCCGGGTCAGCCCCGCAATA
Found at i:18084 original size:19 final size:18
Alignment explanation
Indices: 18062--18124 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
18052 GGAGGCAATC
*
18062 AACCAGGGGGGAGGTGATT
1 AACCAGGGAGGAGGT-ATT
*
18081 AACC-GGTGAGGAGGAAATT
1 AACCAGG-GAGGAGG-TATT
*
18100 AACCAGCGAGGAGGTATT
1 AACCAGGGAGGAGGTATT
18118 CAACCAG
1 -AACCAG
18125 CAAGGCTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
18 5 0.14
19 30 0.83
20 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.37, T:0.14
Consensus pattern (18 bp):
AACCAGGGAGGAGGTATT
Left flanking sequence: Indices 17562 -- 18061
TGGAGCACGAAGGTGGCTACGAGGGGCACCGCGGCCCGGACAAGGGCCCGGATCTCGATTTTCGA
GGTGGTTTCGTCGAGCTTGTGCTGGGCAAGGGCCTCGGAGAACACCAGCTCCACCGCATCGTCCG
CGGAGGGAGGAGGGATGTTGAAGTCGGCCAAAAGCAGCCGTTCCGAGGCAAGGATGTCGGGATGC
ACCTGGGACTGGCGCCGGGAGGACTGGCGCGAGAGGTGGTGCGACGTCTGGCGCGAGAGCAACGC
GGACTCCTCGTCGTCGGTGGCGTCGACATCGACAAAGTCCTCCGGGAGGAAGAGGGCTCCCTTGC
CGACCAGGCCGTAGACGACCAGGCCGCGACGGGCGGTGTTCAGGTGGGTGAACTGGGACATGGTG
TGGTTAAGTGGTGATGGGATGGGTTTATTAGGGTTCACTGGAGGGATGGTACCAGTGAGGGAGTT
TCCGGTGAGGAGGGAAACTGAGGAGGTAACAGTGAGGAGGCAATC
Right flanking sequence: Indices 18125 -- 18624
CAAGGCTAATTGGTAATGCGAGTGGTTAACCAGTGATGTGGAAAGTCAACCAGTAATGAGAAAGT
CAACCAGTGGAAAGTCAACCAGTGAAATGCCAACCTTGTAGATATCTGCGAGACTCAGCAACTAA
TCTAAACAACCAGATATAACTCGTAAGTTCAGTGGACTGTTTCAATTGTTAATTCCTGTTGTCAA
CAATCACGTCAAACAACAATCCTTGGCAACAATTGATAGGGTTTGTGGGGTCCGTTGCTTGTGAG
TCACCAAACGGCTTGCGCTGCAGGGATGAGTCGAGGCTGGATGTAGGAACGCGTGTGGAAACCGG
GAACTCGATGCGACAGGTGGCTCTCTGCAGATCTGCCCTGGGCCCGGTGGTATTGCTAATTCTAT
TTAAGGCTGTCATTGCGCGCTTAGCGCAACAATGCGGGGGCCGGTAGCGGCTACCGGTTAGCCGA
GTAGACGGGCACCAGCCACTGTGGGTGTGGATGCGCGGTTCAAGA
Found at i:18093 original size:38 final size:38
Alignment explanation
Indices: 18048--18122 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
18038 GGAGGTAACA
* * *
18048 GTGAGGAGGCAATCAACCAGGGGGGAGGTGATT-AACCG
1 GTGAGGAGGAAATCAACCAGCGAGGAGGT-ATTCAACCG
*
18086 GTGAGGAGGAAATTAACCAGCGAGGAGGTATTCAACC
1 GTGAGGAGGAAATCAACCAGCGAGGAGGTATTCAACC
18123 AGCAAGGCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.09
38 29 0.91
ACGTcount: A:0.32, C:0.16, G:0.37, T:0.15
Consensus pattern (38 bp):
GTGAGGAGGAAATCAACCAGCGAGGAGGTATTCAACCG
Left flanking sequence: Indices 17548 -- 18047
TAGAGAGCGAGTTCTGGAGCACGAAGGTGGCTACGAGGGGCACCGCGGCCCGGACAAGGGCCCGG
ATCTCGATTTTCGAGGTGGTTTCGTCGAGCTTGTGCTGGGCAAGGGCCTCGGAGAACACCAGCTC
CACCGCATCGTCCGCGGAGGGAGGAGGGATGTTGAAGTCGGCCAAAAGCAGCCGTTCCGAGGCAA
GGATGTCGGGATGCACCTGGGACTGGCGCCGGGAGGACTGGCGCGAGAGGTGGTGCGACGTCTGG
CGCGAGAGCAACGCGGACTCCTCGTCGTCGGTGGCGTCGACATCGACAAAGTCCTCCGGGAGGAA
GAGGGCTCCCTTGCCGACCAGGCCGTAGACGACCAGGCCGCGACGGGCGGTGTTCAGGTGGGTGA
ACTGGGACATGGTGTGGTTAAGTGGTGATGGGATGGGTTTATTAGGGTTCACTGGAGGGATGGTA
CCAGTGAGGGAGTTTCCGGTGAGGAGGGAAACTGAGGAGGTAACA
Right flanking sequence: Indices 18123 -- 18622
AGCAAGGCTAATTGGTAATGCGAGTGGTTAACCAGTGATGTGGAAAGTCAACCAGTAATGAGAAA
GTCAACCAGTGGAAAGTCAACCAGTGAAATGCCAACCTTGTAGATATCTGCGAGACTCAGCAACT
AATCTAAACAACCAGATATAACTCGTAAGTTCAGTGGACTGTTTCAATTGTTAATTCCTGTTGTC
AACAATCACGTCAAACAACAATCCTTGGCAACAATTGATAGGGTTTGTGGGGTCCGTTGCTTGTG
AGTCACCAAACGGCTTGCGCTGCAGGGATGAGTCGAGGCTGGATGTAGGAACGCGTGTGGAAACC
GGGAACTCGATGCGACAGGTGGCTCTCTGCAGATCTGCCCTGGGCCCGGTGGTATTGCTAATTCT
ATTTAAGGCTGTCATTGCGCGCTTAGCGCAACAATGCGGGGGCCGGTAGCGGCTACCGGTTAGCC
GAGTAGACGGGCACCAGCCACTGTGGGTGTGGATGCGCGGTTCAA
Found at i:18177 original size:20 final size:19
Alignment explanation
Indices: 18152--18214 Score: 71
Period size: 15 Copynumber: 3.5 Consensus size: 19
18142 GCGAGTGGTT
*
18152 AACCAGTGATGTGGAAAGTC
1 AACCAGTGATG-AGAAAGTC
*
18172 AACCAGTAATGAGAAAGTC
1 AACCAGTGATGAGAAAGTC
18191 AACCA--G-TG-GAAAGTC
1 AACCAGTGATGAGAAAGTC
18206 AACCAGTGA
1 AACCAGTGA
18215 AATGCCAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
15 12 0.32
16 2 0.05
17 1 0.03
19 12 0.32
20 10 0.27
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.16
Consensus pattern (19 bp):
AACCAGTGATGAGAAAGTC
Left flanking sequence: Indices 17652 -- 18151
GCAAGGGCCTCGGAGAACACCAGCTCCACCGCATCGTCCGCGGAGGGAGGAGGGATGTTGAAGTC
GGCCAAAAGCAGCCGTTCCGAGGCAAGGATGTCGGGATGCACCTGGGACTGGCGCCGGGAGGACT
GGCGCGAGAGGTGGTGCGACGTCTGGCGCGAGAGCAACGCGGACTCCTCGTCGTCGGTGGCGTCG
ACATCGACAAAGTCCTCCGGGAGGAAGAGGGCTCCCTTGCCGACCAGGCCGTAGACGACCAGGCC
GCGACGGGCGGTGTTCAGGTGGGTGAACTGGGACATGGTGTGGTTAAGTGGTGATGGGATGGGTT
TATTAGGGTTCACTGGAGGGATGGTACCAGTGAGGGAGTTTCCGGTGAGGAGGGAAACTGAGGAG
GTAACAGTGAGGAGGCAATCAACCAGGGGGGAGGTGATTAACCGGTGAGGAGGAAATTAACCAGC
GAGGAGGTATTCAACCAGCAAGGCTAATTGGTAATGCGAGTGGTT
Right flanking sequence: Indices 18215 -- 18714
AATGCCAACCTTGTAGATATCTGCGAGACTCAGCAACTAATCTAAACAACCAGATATAACTCGTA
AGTTCAGTGGACTGTTTCAATTGTTAATTCCTGTTGTCAACAATCACGTCAAACAACAATCCTTG
GCAACAATTGATAGGGTTTGTGGGGTCCGTTGCTTGTGAGTCACCAAACGGCTTGCGCTGCAGGG
ATGAGTCGAGGCTGGATGTAGGAACGCGTGTGGAAACCGGGAACTCGATGCGACAGGTGGCTCTC
TGCAGATCTGCCCTGGGCCCGGTGGTATTGCTAATTCTATTTAAGGCTGTCATTGCGCGCTTAGC
GCAACAATGCGGGGGCCGGTAGCGGCTACCGGTTAGCCGAGTAGACGGGCACCAGCCACTGTGGG
TGTGGATGCGCGGTTCAAGAGTATCTGAAACACCAGATGAAACATTCCCCACCCGGATACCCGGT
CGGGGGAGCGTGGCTGGGGGAGCATGGCCCCATTCCCCGGGTGTT
Found at i:19361 original size:10 final size:10
Alignment explanation
Indices: 19348--19386 Score: 78
Period size: 10 Copynumber: 3.9 Consensus size: 10
19338 CCACTTCTTC
19348 CCACTCCTCT
1 CCACTCCTCT
19358 CCACTCCTCT
1 CCACTCCTCT
19368 CCACTCCTCT
1 CCACTCCTCT
19378 CCACTCCTC
1 CCACTCCTC
19387 CTACGATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.10, C:0.62, G:0.00, T:0.28
Consensus pattern (10 bp):
CCACTCCTCT
Left flanking sequence: Indices 18848 -- 19347
CCCGTAGGATCCCCCACGAGCCCATGTACGATTATGCACCACCTAGACGGCACTCGGCCAACGGC
GACCATCACCGTGTCTGAAAATACGATCAGCAGCGATGGTTTGTGACTGTCTGCCCGGAAAAACT
GTGTGGTGGTCTAGATCGCCAGGGGAATTGCAGTTTGGCCCGGTGAGGTGACTATTGGCGAACTG
TCAACCGGGTGGGGGCGACACGTGCTGACTTACGTAAAGAAAATAGGGACGAGGGTCTGGGCGAT
GTCCGATGACTGGCTGATTAAGGTTTGTCCTCGCTGGTTTGTGTTCGATTGTTCATTCTGTTCAG
TCGGTTCAGTCTCTAAGTATACTCAGGCTGTGTTTCACTGATCTGGTGCGAGGGGTGGAAGATAA
GATGACAAAAACCAGATATGAGAAAGACACCGAGAAAGTCGTGTAGGCGTGACTCTACGTAAACC
ACCAATCCCCTTATCTCCCAACTTGTCCGTATCCACCACTTCTTC
Right flanking sequence: Indices 19387 -- 19886
CTACGATGCATCTCGTGCGGCGCGCGATGATTTCGATGCGACCTGTAACCTGCCCTCGCTTTGCA
TCGGTACCAGCCTAGTCTCCACTAGCGGTCTTGTTCTTACTATTAGCCGGCCACCTAGCCTTCAT
TACCACCCCTGGCACCACAAACCAACCAGCCGCATTCCCGCACCCACCCGCGCACGCTAGCATCC
ACCCGACCTAGCACCCACCAGCACCAAGCACCCACCCACACCCAGCACCAGCACCCACCAGCACA
CCAGCACACACATCATGCTGGGCTTCAAATCCACAAAACACAAGCTACCGTACGGGCTCGACTAC
AGCGACGTCCAATCCAACGCCCTGGACGAGGCGCTGATCGTGCTCCCCGTCAACGGCGCTATTCG
GGCCGCGGAGATGGGCCCTGCCAAGCAGCAGATTGCCTTCTCACGGCTCATGGCCGAGGGGCTCT
TTTTCACCGAGAGCGACCCGGGTTTGGCCGGGACAAAACGGTCGA
Found at i:19606 original size:10 final size:10
Alignment explanation
Indices: 19581--19653 Score: 50
Period size: 10 Copynumber: 7.3 Consensus size: 10
19571 CGCTAGCATC
19581 CACCCGACCTAG
1 CACCC-ACC-AG
19593 CACCCACCAG
1 CACCCACCAG
19603 CA-CCA--AG
1 CACCCACCAG
19610 CACCCACCCA-
1 CACCCA-CCAG
19620 CACCCAGCACCAG
1 CA-CC--CACCAG
19633 CACCCACCAG
1 CACCCACCAG
19643 CA--CACCAG
1 CACCCACCAG
19651 CAC
1 CAC
19654 ACACATCATG
Statistics
Matches: 52, Mismatches: 0, Indels: 21
0.71 0.00 0.29
Matches are distributed among these distances:
7 4 0.08
8 11 0.21
9 3 0.06
10 14 0.27
11 6 0.12
12 10 0.19
13 4 0.08
ACGTcount: A:0.32, C:0.56, G:0.11, T:0.01
Consensus pattern (10 bp):
CACCCACCAG
Left flanking sequence: Indices 19081 -- 19580
GAAAATAGGGACGAGGGTCTGGGCGATGTCCGATGACTGGCTGATTAAGGTTTGTCCTCGCTGGT
TTGTGTTCGATTGTTCATTCTGTTCAGTCGGTTCAGTCTCTAAGTATACTCAGGCTGTGTTTCAC
TGATCTGGTGCGAGGGGTGGAAGATAAGATGACAAAAACCAGATATGAGAAAGACACCGAGAAAG
TCGTGTAGGCGTGACTCTACGTAAACCACCAATCCCCTTATCTCCCAACTTGTCCGTATCCACCA
CTTCTTCCCACTCCTCTCCACTCCTCTCCACTCCTCTCCACTCCTCCTACGATGCATCTCGTGCG
GCGCGCGATGATTTCGATGCGACCTGTAACCTGCCCTCGCTTTGCATCGGTACCAGCCTAGTCTC
CACTAGCGGTCTTGTTCTTACTATTAGCCGGCCACCTAGCCTTCATTACCACCCCTGGCACCACA
AACCAACCAGCCGCATTCCCGCACCCACCCGCGCACGCTAGCATC
Right flanking sequence: Indices 19654 -- 20153
ACACATCATGCTGGGCTTCAAATCCACAAAACACAAGCTACCGTACGGGCTCGACTACAGCGACG
TCCAATCCAACGCCCTGGACGAGGCGCTGATCGTGCTCCCCGTCAACGGCGCTATTCGGGCCGCG
GAGATGGGCCCTGCCAAGCAGCAGATTGCCTTCTCACGGCTCATGGCCGAGGGGCTCTTTTTCAC
CGAGAGCGACCCGGGTTTGGCCGGGACAAAACGGTCGAAACGGGACCCCGAGATCAAGCACCCGA
CCCAGGCCGATGGGATTGCCCGGTACCTGGACCGGTACACCAAGCCCAAGAGAACCGCACGCACC
ATTGACGACCACCCGTTTGCCCTTGAGATGTTCCCCCAGGAGCTCTTTTCGGTGATGGGGGTGTC
CAAGAAGAAGCTTTTGGCGGTGTCCAAGTACCGGGACAACGGTGGGCTCAAGGAGTACACCGTCT
CTGGCGACGACGAGGCCGCTGCTATGCTTGAGCGTTTGAAGAACA
Found at i:19629 original size:24 final size:24
Alignment explanation
Indices: 19597--19653 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
19587 ACCTAGCACC
19597 CACCAGCACCAAGCACCCACC--CA
1 CACCAGCACC-AGCACCCACCAGCA
19620 CACCCAGCACCAGCACCCACCAGCA
1 CA-CCAGCACCAGCACCCACCAGCA
19645 CACCAGCAC
1 CACCAGCAC
19654 ACACATCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 12 0.39
24 15 0.48
25 4 0.13
ACGTcount: A:0.33, C:0.56, G:0.11, T:0.00
Consensus pattern (24 bp):
CACCAGCACCAGCACCCACCAGCA
Left flanking sequence: Indices 19097 -- 19596
GTCTGGGCGATGTCCGATGACTGGCTGATTAAGGTTTGTCCTCGCTGGTTTGTGTTCGATTGTTC
ATTCTGTTCAGTCGGTTCAGTCTCTAAGTATACTCAGGCTGTGTTTCACTGATCTGGTGCGAGGG
GTGGAAGATAAGATGACAAAAACCAGATATGAGAAAGACACCGAGAAAGTCGTGTAGGCGTGACT
CTACGTAAACCACCAATCCCCTTATCTCCCAACTTGTCCGTATCCACCACTTCTTCCCACTCCTC
TCCACTCCTCTCCACTCCTCTCCACTCCTCCTACGATGCATCTCGTGCGGCGCGCGATGATTTCG
ATGCGACCTGTAACCTGCCCTCGCTTTGCATCGGTACCAGCCTAGTCTCCACTAGCGGTCTTGTT
CTTACTATTAGCCGGCCACCTAGCCTTCATTACCACCCCTGGCACCACAAACCAACCAGCCGCAT
TCCCGCACCCACCCGCGCACGCTAGCATCCACCCGACCTAGCACC
Right flanking sequence: Indices 19654 -- 20153
ACACATCATGCTGGGCTTCAAATCCACAAAACACAAGCTACCGTACGGGCTCGACTACAGCGACG
TCCAATCCAACGCCCTGGACGAGGCGCTGATCGTGCTCCCCGTCAACGGCGCTATTCGGGCCGCG
GAGATGGGCCCTGCCAAGCAGCAGATTGCCTTCTCACGGCTCATGGCCGAGGGGCTCTTTTTCAC
CGAGAGCGACCCGGGTTTGGCCGGGACAAAACGGTCGAAACGGGACCCCGAGATCAAGCACCCGA
CCCAGGCCGATGGGATTGCCCGGTACCTGGACCGGTACACCAAGCCCAAGAGAACCGCACGCACC
ATTGACGACCACCCGTTTGCCCTTGAGATGTTCCCCCAGGAGCTCTTTTCGGTGATGGGGGTGTC
CAAGAAGAAGCTTTTGGCGGTGTCCAAGTACCGGGACAACGGTGGGCTCAAGGAGTACACCGTCT
CTGGCGACGACGAGGCCGCTGCTATGCTTGAGCGTTTGAAGAACA
Found at i:19640 original size:17 final size:18
Alignment explanation
Indices: 19556--19630 Score: 68
Period size: 17 Copynumber: 4.3 Consensus size: 18
19546 CCGCATTCCC
*
19556 GCACCCACCCGCGCACGCTA
1 GCACCCACCC-AGCAC-CTA
*
19576 GCATCCACCC-G-ACCTA
1 GCACCCACCCAGCACCTA
*
19592 GCACCCA-CCAGCACCAA
1 GCACCCACCCAGCACCTA
*
19609 GCACCCACCCA-CACCCA
1 GCACCCACCCAGCACCTA
19626 GCACC
1 GCACC
19631 AGCACCCACC
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
15 2 0.04
16 10 0.21
17 23 0.48
18 4 0.08
20 9 0.19
ACGTcount: A:0.27, C:0.56, G:0.13, T:0.04
Consensus pattern (18 bp):
GCACCCACCCAGCACCTA
Left flanking sequence: Indices 19056 -- 19555
GGCGACACGTGCTGACTTACGTAAAGAAAATAGGGACGAGGGTCTGGGCGATGTCCGATGACTGG
CTGATTAAGGTTTGTCCTCGCTGGTTTGTGTTCGATTGTTCATTCTGTTCAGTCGGTTCAGTCTC
TAAGTATACTCAGGCTGTGTTTCACTGATCTGGTGCGAGGGGTGGAAGATAAGATGACAAAAACC
AGATATGAGAAAGACACCGAGAAAGTCGTGTAGGCGTGACTCTACGTAAACCACCAATCCCCTTA
TCTCCCAACTTGTCCGTATCCACCACTTCTTCCCACTCCTCTCCACTCCTCTCCACTCCTCTCCA
CTCCTCCTACGATGCATCTCGTGCGGCGCGCGATGATTTCGATGCGACCTGTAACCTGCCCTCGC
TTTGCATCGGTACCAGCCTAGTCTCCACTAGCGGTCTTGTTCTTACTATTAGCCGGCCACCTAGC
CTTCATTACCACCCCTGGCACCACAAACCAACCAGCCGCATTCCC
Right flanking sequence: Indices 19631 -- 20130
AGCACCCACCAGCACACCAGCACACACATCATGCTGGGCTTCAAATCCACAAAACACAAGCTACC
GTACGGGCTCGACTACAGCGACGTCCAATCCAACGCCCTGGACGAGGCGCTGATCGTGCTCCCCG
TCAACGGCGCTATTCGGGCCGCGGAGATGGGCCCTGCCAAGCAGCAGATTGCCTTCTCACGGCTC
ATGGCCGAGGGGCTCTTTTTCACCGAGAGCGACCCGGGTTTGGCCGGGACAAAACGGTCGAAACG
GGACCCCGAGATCAAGCACCCGACCCAGGCCGATGGGATTGCCCGGTACCTGGACCGGTACACCA
AGCCCAAGAGAACCGCACGCACCATTGACGACCACCCGTTTGCCCTTGAGATGTTCCCCCAGGAG
CTCTTTTCGGTGATGGGGGTGTCCAAGAAGAAGCTTTTGGCGGTGTCCAAGTACCGGGACAACGG
TGGGCTCAAGGAGTACACCGTCTCTGGCGACGACGAGGCCGCTGC
Found at i:20414 original size:16 final size:16
Alignment explanation
Indices: 20394--20440 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
20384 GTCAGGGTAG
20394 AGGGAGCCTACGGAGA
1 AGGGAGCCTACGGAGA
*
20410 TGGGAGCCTACGGAGA
1 AGGGAGCCTACGGAGA
*
20426 AAGGAGCCTACGGAG
1 AGGGAGCCTACGGAG
20441 TTAGCTTGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.30, C:0.19, G:0.43, T:0.09
Consensus pattern (16 bp):
AGGGAGCCTACGGAGA
Left flanking sequence: Indices 19894 -- 20393
CCCCGAGATCAAGCACCCGACCCAGGCCGATGGGATTGCCCGGTACCTGGACCGGTACACCAAGC
CCAAGAGAACCGCACGCACCATTGACGACCACCCGTTTGCCCTTGAGATGTTCCCCCAGGAGCTC
TTTTCGGTGATGGGGGTGTCCAAGAAGAAGCTTTTGGCGGTGTCCAAGTACCGGGACAACGGTGG
GCTCAAGGAGTACACCGTCTCTGGCGACGACGAGGCCGCTGCTATGCTTGAGCGTTTGAAGAACA
TGGCTGACGTTGAGGACGCCAAGAACGAGGACGAAGATGAGGAGCCTGAGGAGGACGTTGACGAC
GAGTTCGACGACGACGACGACGAGGACGACTACAACGCTGAGAAGTACTTCGACGACGGCGATGA
CGACGGCGGAGACGATGGAGACGGCGACGAGGCCGCTTTTTAGGATAGGGGTCTGACTACCAGAC
AAATATATGGGAATAATCTGAACGGTAAGAAGGAGGTCAGGGTAG
Right flanking sequence: Indices 20441 -- 20940
TTAGCTTGACACTAGATAAGCTGTTGGGTTGGAGACAAACCAAACTATTTGGTGGAAGATAGGAG
GTTCATCAGGTGCTTCGAAATTTGGTCAACCAAGGAAGCAAGGGGGTCTGGAGATCAACCAGTGG
TCAGCCAGGGGTCAGCCAGGGGGTTGCCAGGGGGTCAGCCAGGGGGCTGGCACGACTGTCGGCGA
GGATGTCAGCCAAGGAGGTCAATAGTCAGCCCGTGAGAAAACGCTGGATCCACACTCGCTTCTTC
ATGTGCAATGGTGACAATATTGCGCAACAATACCGCCAACACACGCCGGTGGGCTTGTTCAACGT
ATTCAATGGTACCTCAATCGACGCACGTTTCAATCTGGCTGCCACGCTCACAAAGGCCCCAGCAG
CTCTCCTGCTTTTTATTGTTCGTTATTACACAATCTCTTGTTCCACTCGCTTCAACCTTGTTCCC
ACCGGATGTTACATGGATCCACTCACAATGGGGTAGCCGAGCCAA
Found at i:20583 original size:11 final size:11
Alignment explanation
Indices: 20564--20615 Score: 61
Period size: 11 Copynumber: 4.6 Consensus size: 11
20554 TGGAGATCAA
*
20564 CCAGTGGTCAG
1 CCAGGGGTCAG
20575 CCAGGGGTCAG
1 CCAGGGGTCAG
*
20586 CCAGGGGGT-TG
1 CCA-GGGGTCAG
20597 CCAGGGGGTCAG
1 CCA-GGGGTCAG
20609 CCAGGGG
1 CCAGGGG
20616 GCTGGCACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 27 0.75
12 9 0.25
ACGTcount: A:0.15, C:0.25, G:0.48, T:0.12
Consensus pattern (11 bp):
CCAGGGGTCAG
Left flanking sequence: Indices 20064 -- 20563
TGTCCAAGTACCGGGACAACGGTGGGCTCAAGGAGTACACCGTCTCTGGCGACGACGAGGCCGCT
GCTATGCTTGAGCGTTTGAAGAACATGGCTGACGTTGAGGACGCCAAGAACGAGGACGAAGATGA
GGAGCCTGAGGAGGACGTTGACGACGAGTTCGACGACGACGACGACGAGGACGACTACAACGCTG
AGAAGTACTTCGACGACGGCGATGACGACGGCGGAGACGATGGAGACGGCGACGAGGCCGCTTTT
TAGGATAGGGGTCTGACTACCAGACAAATATATGGGAATAATCTGAACGGTAAGAAGGAGGTCAG
GGTAGAGGGAGCCTACGGAGATGGGAGCCTACGGAGAAAGGAGCCTACGGAGTTAGCTTGACACT
AGATAAGCTGTTGGGTTGGAGACAAACCAAACTATTTGGTGGAAGATAGGAGGTTCATCAGGTGC
TTCGAAATTTGGTCAACCAAGGAAGCAAGGGGGTCTGGAGATCAA
Right flanking sequence: Indices 20616 -- 21115
GCTGGCACGACTGTCGGCGAGGATGTCAGCCAAGGAGGTCAATAGTCAGCCCGTGAGAAAACGCT
GGATCCACACTCGCTTCTTCATGTGCAATGGTGACAATATTGCGCAACAATACCGCCAACACACG
CCGGTGGGCTTGTTCAACGTATTCAATGGTACCTCAATCGACGCACGTTTCAATCTGGCTGCCAC
GCTCACAAAGGCCCCAGCAGCTCTCCTGCTTTTTATTGTTCGTTATTACACAATCTCTTGTTCCA
CTCGCTTCAACCTTGTTCCCACCGGATGTTACATGGATCCACTCACAATGGGGTAGCCGAGCCAA
AACAAAGCCGCGGCAGGTAAACTCGCTGTAATTGCAAACTGCCAAATGGGATTCTTTACCATAGT
CTGGCGTTCATCTGTCGTAATCTGGGTTCGAGGGCTCGTAAGTGGCTCTCGTATCCGCAGCTTGG
AGGGGCATTGTTCCTCGGGAGTGGTCAGCAAAGGCGGGTGACGCG
Found at i:20589 original size:22 final size:22
Alignment explanation
Indices: 20564--20615 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
20554 TGGAGATCAA
*
20564 CCAGTGGTCAGCCA-GGGGTCAG
1 CCAGGGGT-AGCCAGGGGGTCAG
*
20586 CCAGGGGGTTGCCAGGGGGTCAG
1 CCA-GGGGTAGCCAGGGGGTCAG
20609 CCAGGGG
1 CCAGGGG
20616 GCTGGCACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.15, C:0.25, G:0.48, T:0.12
Consensus pattern (22 bp):
CCAGGGGTAGCCAGGGGGTCAG
Left flanking sequence: Indices 20064 -- 20563
TGTCCAAGTACCGGGACAACGGTGGGCTCAAGGAGTACACCGTCTCTGGCGACGACGAGGCCGCT
GCTATGCTTGAGCGTTTGAAGAACATGGCTGACGTTGAGGACGCCAAGAACGAGGACGAAGATGA
GGAGCCTGAGGAGGACGTTGACGACGAGTTCGACGACGACGACGACGAGGACGACTACAACGCTG
AGAAGTACTTCGACGACGGCGATGACGACGGCGGAGACGATGGAGACGGCGACGAGGCCGCTTTT
TAGGATAGGGGTCTGACTACCAGACAAATATATGGGAATAATCTGAACGGTAAGAAGGAGGTCAG
GGTAGAGGGAGCCTACGGAGATGGGAGCCTACGGAGAAAGGAGCCTACGGAGTTAGCTTGACACT
AGATAAGCTGTTGGGTTGGAGACAAACCAAACTATTTGGTGGAAGATAGGAGGTTCATCAGGTGC
TTCGAAATTTGGTCAACCAAGGAAGCAAGGGGGTCTGGAGATCAA
Right flanking sequence: Indices 20616 -- 21115
GCTGGCACGACTGTCGGCGAGGATGTCAGCCAAGGAGGTCAATAGTCAGCCCGTGAGAAAACGCT
GGATCCACACTCGCTTCTTCATGTGCAATGGTGACAATATTGCGCAACAATACCGCCAACACACG
CCGGTGGGCTTGTTCAACGTATTCAATGGTACCTCAATCGACGCACGTTTCAATCTGGCTGCCAC
GCTCACAAAGGCCCCAGCAGCTCTCCTGCTTTTTATTGTTCGTTATTACACAATCTCTTGTTCCA
CTCGCTTCAACCTTGTTCCCACCGGATGTTACATGGATCCACTCACAATGGGGTAGCCGAGCCAA
AACAAAGCCGCGGCAGGTAAACTCGCTGTAATTGCAAACTGCCAAATGGGATTCTTTACCATAGT
CTGGCGTTCATCTGTCGTAATCTGGGTTCGAGGGCTCGTAAGTGGCTCTCGTATCCGCAGCTTGG
AGGGGCATTGTTCCTCGGGAGTGGTCAGCAAAGGCGGGTGACGCG
Found at i:20608 original size:23 final size:22
Alignment explanation
Indices: 20574--20616 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
20564 CCAGTGGTCA
20574 GCCAGGGGTCAGCCAGGGGGTT
1 GCCAGGGGTCAGCCAGGGGGTT
20596 GCCAGGGGGTCAGCCAGGGGG
1 GCCA-GGGGTCAGCCAGGGGG
20617 CTGGCACGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.14, C:0.23, G:0.53, T:0.09
Consensus pattern (22 bp):
GCCAGGGGTCAGCCAGGGGGTT
Left flanking sequence: Indices 20074 -- 20573
CCGGGACAACGGTGGGCTCAAGGAGTACACCGTCTCTGGCGACGACGAGGCCGCTGCTATGCTTG
AGCGTTTGAAGAACATGGCTGACGTTGAGGACGCCAAGAACGAGGACGAAGATGAGGAGCCTGAG
GAGGACGTTGACGACGAGTTCGACGACGACGACGACGAGGACGACTACAACGCTGAGAAGTACTT
CGACGACGGCGATGACGACGGCGGAGACGATGGAGACGGCGACGAGGCCGCTTTTTAGGATAGGG
GTCTGACTACCAGACAAATATATGGGAATAATCTGAACGGTAAGAAGGAGGTCAGGGTAGAGGGA
GCCTACGGAGATGGGAGCCTACGGAGAAAGGAGCCTACGGAGTTAGCTTGACACTAGATAAGCTG
TTGGGTTGGAGACAAACCAAACTATTTGGTGGAAGATAGGAGGTTCATCAGGTGCTTCGAAATTT
GGTCAACCAAGGAAGCAAGGGGGTCTGGAGATCAACCAGTGGTCA
Right flanking sequence: Indices 20617 -- 21116
CTGGCACGACTGTCGGCGAGGATGTCAGCCAAGGAGGTCAATAGTCAGCCCGTGAGAAAACGCTG
GATCCACACTCGCTTCTTCATGTGCAATGGTGACAATATTGCGCAACAATACCGCCAACACACGC
CGGTGGGCTTGTTCAACGTATTCAATGGTACCTCAATCGACGCACGTTTCAATCTGGCTGCCACG
CTCACAAAGGCCCCAGCAGCTCTCCTGCTTTTTATTGTTCGTTATTACACAATCTCTTGTTCCAC
TCGCTTCAACCTTGTTCCCACCGGATGTTACATGGATCCACTCACAATGGGGTAGCCGAGCCAAA
ACAAAGCCGCGGCAGGTAAACTCGCTGTAATTGCAAACTGCCAAATGGGATTCTTTACCATAGTC
TGGCGTTCATCTGTCGTAATCTGGGTTCGAGGGCTCGTAAGTGGCTCTCGTATCCGCAGCTTGGA
GGGGCATTGTTCCTCGGGAGTGGTCAGCAAAGGCGGGTGACGCGC
Found at i:24310 original size:10 final size:10
Alignment explanation
Indices: 24295--24320 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24285 GTGGAAGGCA
24295 TGTGTGTGGG
1 TGTGTGTGGG
24305 TGTGTGTGGG
1 TGTGTGTGGG
24315 TGTGTG
1 TGTGTG
24321 CGTGTGTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (10 bp):
TGTGTGTGGG
Left flanking sequence: Indices 23795 -- 24294
CTTGGCAAAGGTGGTTTTGATCGCTAAAAAGAGGCCCACGAGGTGGACGTCGTCAGCCAGCGCAG
CCAACAGCTGCTCAAACGTAGCCACCAAGTCGTTGAGGATCAAACCGAGCTTGGCCTCCGTTTTG
AGGGCGATGAGCCGGCGCCGGTGGGCCACCACGCGCTCGGCGGTGCTCTGGGAGGCCGAGAGCGA
GCGGTGCTTCTGTTCCACCAGGTCCAAGTACTGGCCAAGGTCTGTGCGGACTCCCTGGAGGTCGG
GACAGCTCGGGTCCTCCTCCAAGTTGATCAGCTTACCTAAGCGGACGAAGTCGTCAAACAGCACA
TTGACGAGGTCGCGGAGCTGGGTGTTGAGCTGGTCGAGCTCCTGGGAGAGGTCCTTGGTGAGGAC
GTCGAGCTTGGTGTAGCGGTGGTTGAGGAAGAGCTCGGAGTCGACGGAGTCTGGGTTGGGGAGGG
GGTCCTCGGGGTAGTCACCTTCGGGTGTGTAGTCAGTGGAAGGCA
Right flanking sequence: Indices 24321 -- 24820
CGTGTGTGTAATGCTAAGAACGGTGGTTCTTTATGGGTACGGTGGATGTGTGGGTCGTGGACGAG
GATAGGTGGGTACTTGATTCAGTGGGTACGTGGACGTGGATGGGTGTTGTGTAGTTTGGATGGTT
GGGTGGAGTGGATGAGTGGATCGGTATGGGGGTATACCGCAATAAAGGCTTGGATGGATATGGGT
GTAAGCCGTGTGCAACCTGGTGTGCCTGTTGTGTCTGTTGTGTGTGCGGTGGCCTGTGCGGTGTG
TGCGGTGTGTGTCTGTGCGGTGTGTGCCTGTGCGGTGTGCCTGCGGTGTGCTTGGATATACCTGC
GATATGCCTGTGCGGTACCTCGTGCGAGTCTTGTCCTAGTCAACCAACAGAAGCGTGCAAACTGC
CAAGAACCACGGGTCCAAACGGTAATAAACAGCGGAGACTCCGCAGGTCTGTCCACTACCCACGA
GTGCTACCGTGGCTCGGTGCGCGCGCACCAACGCGACACCACACC
Found at i:24599 original size:15 final size:15
Alignment explanation
Indices: 24579--24619 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
24569 CTGTGCGGTG
*
24579 TGTGCGGTGTGTGTC
1 TGTGCGGTGTGTGCC
24594 TGTGCGGTGTGTGCC
1 TGTGCGGTGTGTGCC
24609 TGTGCGGTGTG
1 TGTGCGGTGTG
24620 CCTGCGGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.00, C:0.15, G:0.49, T:0.37
Consensus pattern (15 bp):
TGTGCGGTGTGTGCC
Left flanking sequence: Indices 24079 -- 24578
TGATCAGCTTACCTAAGCGGACGAAGTCGTCAAACAGCACATTGACGAGGTCGCGGAGCTGGGTG
TTGAGCTGGTCGAGCTCCTGGGAGAGGTCCTTGGTGAGGACGTCGAGCTTGGTGTAGCGGTGGTT
GAGGAAGAGCTCGGAGTCGACGGAGTCTGGGTTGGGGAGGGGGTCCTCGGGGTAGTCACCTTCGG
GTGTGTAGTCAGTGGAAGGCATGTGTGTGGGTGTGTGTGGGTGTGTGCGTGTGTGTAATGCTAAG
AACGGTGGTTCTTTATGGGTACGGTGGATGTGTGGGTCGTGGACGAGGATAGGTGGGTACTTGAT
TCAGTGGGTACGTGGACGTGGATGGGTGTTGTGTAGTTTGGATGGTTGGGTGGAGTGGATGAGTG
GATCGGTATGGGGGTATACCGCAATAAAGGCTTGGATGGATATGGGTGTAAGCCGTGTGCAACCT
GGTGTGCCTGTTGTGTCTGTTGTGTGTGCGGTGGCCTGTGCGGTG
Right flanking sequence: Indices 24620 -- 25119
CCTGCGGTGTGCTTGGATATACCTGCGATATGCCTGTGCGGTACCTCGTGCGAGTCTTGTCCTAG
TCAACCAACAGAAGCGTGCAAACTGCCAAGAACCACGGGTCCAAACGGTAATAAACAGCGGAGAC
TCCGCAGGTCTGTCCACTACCCACGAGTGCTACCGTGGCTCGGTGCGCGCGCACCAACGCGACAC
CACACCCGTGCGGCTCACGACACCACCACCCAATACCACCAGAGACGCCCACGGGTTCAGCCACC
ACTTCAGCCTTGATCGTCGCCGATCGCCAACAATACCTCTTCATCGCCCGTGCCACCAGGCACAA
CCCAGGTACAAACAATTGGCGCAATCCCCAGGCACGATCTATCATCACTACACAAAGACATTGAG
CCAACAGCACCCACAATGCCCCGACGACAATACCCGGCCCACTACCCGAGCCTTACACGAACCAC
TACTCTAAGTACAATACCCACCTTCGTAGCCATCCTTCGTACTAA
Found at i:25763 original size:12 final size:12
Alignment explanation
Indices: 25728--25765 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
25718 GGGAAGGGGG
*
25728 GTCAGTGTAGGG
1 GTCAGTGTAGGT
*
25740 GTTAGTGTAGGT
1 GTCAGTGTAGGT
25752 GTCAGTGTAGGT
1 GTCAGTGTAGGT
25764 GT
1 GT
25766 AGGGGTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.16, C:0.05, G:0.45, T:0.34
Consensus pattern (12 bp):
GTCAGTGTAGGT
Left flanking sequence: Indices 25228 -- 25727
GTTTTGCCCGCGAGCCATTATCGTCCCGGGAGAGACGTCCCGATCCAGTAGTGGTTACGAAATCT
GCCGCCCACCGTCACCGGCATTTACGATATCGTTGCCCCAGCCTCACTGGGGGTGTTGCACCTAT
GAGGTCATGGTGCTTTTCGCGGTGCCTCCAATTTCAAAGGCGTGTGCTACCCAAAGGCGAAATAG
TCCCGCGCCGGCCCAGGTTACGGCCGGCTTTGTGGCGTGCCAAGTGAGACGCCTACTGACACCCC
GGCAAACGTTGCTCGAGGTGCTTGGGCCCCCTATTTTGCATGCTGCCAACGCTCTTAACATGGCG
CGGGTGGCACACCGCACAGTGAGCTCAGCGGGTGCACAGCCCTCTGGCTGCACGCCAGAAATGCG
CTTTATGGGGTGCACACATGGCACCGGGCACAAGCCCGGGGAAGCGTGGGGCCGTGCACAACTGG
GCTCGGCTAGCGATTGACGAGTGGAAATGGCAGTGGGGAAGGGGG
Right flanking sequence: Indices 25766 -- 26265
AGGGGTGAGTCTGGTGTCGGTGTAGTGTCGTTTTAGGTGTCATTTAGGTGCGGTTAGCGTCGCTT
TGGGCCAGGGTTGCTTCGGACTGGCGGTTCGGTGATAGCTACTGTAGGGACCTGCCTCAATTACA
ACTGGGATCCCGGCGGCTCAAACGGGTGGTAGTGTGATACTGATGGGAGCCTTGACTGGGTGGTG
GGACGTGACGGAATGTGCACTGACACTAGGATACCAGGGCCCGGGCAAATGAGCAGTAGAGCATT
TGCAGCGAAGCGCAAAGAAATTGCAGCTATGAGAACAGTGAGGACCCATTACCGAGTCAATTACC
AGTAGCCAACCATTGCTCAACTGTCTCTCCACCCATTACTCTCTCTCTCTCTCTCCCTCTCCACT
ACTACTGATCTTACGATCCACCCAAGCCACCACCCGAACTAACCTCCTATATTAATAACCACCCA
ACCAACCCCACACCCACCACCAATTAACCCCACACACACCACCAC
Found at i:25788 original size:29 final size:30
Alignment explanation
Indices: 25732--25790 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
25722 AGGGGGGTCA
* *
25732 GTGTAGGGGTTAGTGTAGGTGTCAGTGTAG
1 GTGTAGGGGTGAGTCTAGGTGTCAGTGTAG
*
25762 GTGTAGGGGTGAGTCT-GGTGTCGGTGTAG
1 GTGTAGGGGTGAGTCTAGGTGTCAGTGTAG
25791 TGTCGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.14, C:0.05, G:0.49, T:0.32
Consensus pattern (30 bp):
GTGTAGGGGTGAGTCTAGGTGTCAGTGTAG
Left flanking sequence: Indices 25232 -- 25731
TGCCCGCGAGCCATTATCGTCCCGGGAGAGACGTCCCGATCCAGTAGTGGTTACGAAATCTGCCG
CCCACCGTCACCGGCATTTACGATATCGTTGCCCCAGCCTCACTGGGGGTGTTGCACCTATGAGG
TCATGGTGCTTTTCGCGGTGCCTCCAATTTCAAAGGCGTGTGCTACCCAAAGGCGAAATAGTCCC
GCGCCGGCCCAGGTTACGGCCGGCTTTGTGGCGTGCCAAGTGAGACGCCTACTGACACCCCGGCA
AACGTTGCTCGAGGTGCTTGGGCCCCCTATTTTGCATGCTGCCAACGCTCTTAACATGGCGCGGG
TGGCACACCGCACAGTGAGCTCAGCGGGTGCACAGCCCTCTGGCTGCACGCCAGAAATGCGCTTT
ATGGGGTGCACACATGGCACCGGGCACAAGCCCGGGGAAGCGTGGGGCCGTGCACAACTGGGCTC
GGCTAGCGATTGACGAGTGGAAATGGCAGTGGGGAAGGGGGGTCA
Right flanking sequence: Indices 25791 -- 26290
TGTCGTTTTAGGTGTCATTTAGGTGCGGTTAGCGTCGCTTTGGGCCAGGGTTGCTTCGGACTGGC
GGTTCGGTGATAGCTACTGTAGGGACCTGCCTCAATTACAACTGGGATCCCGGCGGCTCAAACGG
GTGGTAGTGTGATACTGATGGGAGCCTTGACTGGGTGGTGGGACGTGACGGAATGTGCACTGACA
CTAGGATACCAGGGCCCGGGCAAATGAGCAGTAGAGCATTTGCAGCGAAGCGCAAAGAAATTGCA
GCTATGAGAACAGTGAGGACCCATTACCGAGTCAATTACCAGTAGCCAACCATTGCTCAACTGTC
TCTCCACCCATTACTCTCTCTCTCTCTCTCCCTCTCCACTACTACTGATCTTACGATCCACCCAA
GCCACCACCCGAACTAACCTCCTATATTAATAACCACCCAACCAACCCCACACCCACCACCAATT
AACCCCACACACACCACCACCAATCAACCCACCACCACCCCCACC
Found at i:26268 original size:25 final size:24
Alignment explanation
Indices: 26213--26275 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 24
26203 TATATTAATA
*
26213 ACCACCCAACCAA-CCC-CACACCC
1 ACCA-CCAATCAACCCCACACACCC
*
26236 ACCACCAATTAACCCCACACACACC
1 ACCACCAATCAACCCCACACAC-CC
26261 ACCACCAATCAACCC
1 ACCACCAATCAACCC
26276 ACCACCACCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.18
23 7 0.21
24 5 0.15
25 16 0.47
ACGTcount: A:0.38, C:0.57, G:0.00, T:0.05
Consensus pattern (24 bp):
ACCACCAATCAACCCCACACACCC
Left flanking sequence: Indices 25713 -- 26212
CAGTGGGGAAGGGGGGTCAGTGTAGGGGTTAGTGTAGGTGTCAGTGTAGGTGTAGGGGTGAGTCT
GGTGTCGGTGTAGTGTCGTTTTAGGTGTCATTTAGGTGCGGTTAGCGTCGCTTTGGGCCAGGGTT
GCTTCGGACTGGCGGTTCGGTGATAGCTACTGTAGGGACCTGCCTCAATTACAACTGGGATCCCG
GCGGCTCAAACGGGTGGTAGTGTGATACTGATGGGAGCCTTGACTGGGTGGTGGGACGTGACGGA
ATGTGCACTGACACTAGGATACCAGGGCCCGGGCAAATGAGCAGTAGAGCATTTGCAGCGAAGCG
CAAAGAAATTGCAGCTATGAGAACAGTGAGGACCCATTACCGAGTCAATTACCAGTAGCCAACCA
TTGCTCAACTGTCTCTCCACCCATTACTCTCTCTCTCTCTCTCCCTCTCCACTACTACTGATCTT
ACGATCCACCCAAGCCACCACCCGAACTAACCTCCTATATTAATA
Right flanking sequence: Indices 26276 -- 26775
ACCACCACCCCCACCCCCACACCCTCACCACACCCCGCCACACCAACCAACACCTCCATCTCCAC
CCTCACTACACCCACCATACCCTCACCTCCTCCCACTCCCCCACCTTTCTTTTCTTCATTTTTCC
GTCGTCACCGCTCGGCTGCCAAATAATATTCTGCCCGCGGCGCAAAAAATACGTTTACAGGTTGG
CCCCACGCACCACGTATCCGCCGCCCGTGCATATGACCAAAAAAAACTAGGTGCAGCGCTCACGC
TGCATTTACGTTTGAAATAATAACCGCCAAATAATATCGGGGTGTCAAATTTTGTAATCTTATAT
ATACATCGGATTCGTCTCGAGGAGACCCCACCGACTCCCTCAGGCCCCCCCCGACCCCGCCCTGC
CCCCGACCCCCGCGCACACACCCCCAGAGCCCATGTCCACCGCGGTCTACTCCCTCGACGACCAG
CAAAAGCTACCCTCGTTGTCGCAAATCATGCCGGGCCAACAGCCC
Found at i:27805 original size:15 final size:13
Alignment explanation
Indices: 27765--27806 Score: 66
Period size: 13 Copynumber: 3.1 Consensus size: 13
27755 CATGAATAGA
27765 GAATAAAGGAGAC
1 GAATAAAGGAGAC
27778 GAATAAAGGAGAC
1 GAATAAAGGAGAC
27791 GAATAACACGGAGAC
1 GAATAA-A-GGAGAC
27806 G
1 G
27807 GTGTAGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 19 0.70
14 1 0.04
15 7 0.26
ACGTcount: A:0.50, C:0.12, G:0.31, T:0.07
Consensus pattern (13 bp):
GAATAAAGGAGAC
Left flanking sequence: Indices 27265 -- 27764
ATCCGCACCAACCCCGAGGTGTCACGTGAGCTCGGGCGCCGGTGGCGGGCGTTGCTGGCGGACGA
AAAGGACCACTGGAACCTGTTGGCGGAGGAGGAGAAAAAGAACCACGCCAAGAAATACCCCGGGT
ACCGCTACACCCCGCGGCGCAACGGCAAGCTGAAGAACTGCCCCGCGTGCCGCCGCCAGGCCATG
CGCCCCGCCCCCGCCCCCGCGGTGCCGGTGGTGGACTTCCCCTACCAGGGCCCGCAACCCGAGGT
CTACATGCAGGCGCTGCTGTTTGGGTCGTACCCGCCGCCGTTGTTCGAGCTGGGCCAGCACACCC
CGCAGTACCAGGACAAGTTGCTGCCGTTGCTGGGCCTGCTGCAGGCGCTTCCCCCCGCGGGCTCG
GTGGGGGAGTACCCGCAGCCGCAGTTTGAGCCGCCGGCGGCGGGCCCGGTGCGGTTCAACCTGTT
GCCGACGCCCAACTACTTTGACGGCGGTTTCCAATCATGAATAGA
Right flanking sequence: Indices 27807 -- 28306
GTGTAGAGAGGTGGCTAGGAAGAGCCCAGGTCTGGGTGTAGAGAAGGTGGAGAACGTGCGAAAAA
AGGTGTGTGTGTGGGTGGGTGTGGGTGGGTGTGTGAGAGGTGTGGGGTGTGTGTGGGGTGTGTGT
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGAGATAGTAAAGGGTTGGGTGGTGGCTAGT
GTGGTGGGTCTGGACGGGTGGACCTAGTGTAGTGATTTAGCGAGTAGTTCTGGGTTGGACTCAGG
GTAGGTTTATTAGTCTAGTGGGTTGGCCGAATGGGTTGGTTGGTCTAATGGGTTGGCTTAACGGG
TTTGTCTAGTGGGTACCTAGTGGATCGGTCCAATGGGTTGTTCTAATGGTTGGTTGGCCCAGTGG
GTTGTCAATTGAGTTGACCATTGGGTTGGTCTGATGTGGTCTAGTGGACTGATTCTGTTTGTGGG
TTGGTTTAATGGGTTGGTACGAATTGGTTTTACGGATCAAGTGGG
Found at i:27931 original size:18 final size:20
Alignment explanation
Indices: 27876--27933 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
27866 GAAAAAAGGT
* *
27876 GTGTGTGTGGGTGGGTGTGG
1 GTGTGTGTGTGAGGGTGTGG
*
27896 GTGGGTGTGTGAGAGGTGTGG
1 GTGTGTGTGTGAG-GGTGTGG
27917 G-GTGTGTGTG-GGGTGTG
1 GTGTGTGTGTGAGGGTGTG
27934 TGTGGGGGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 6 0.18
19 1 0.03
20 18 0.55
21 8 0.24
ACGTcount: A:0.03, C:0.00, G:0.64, T:0.33
Consensus pattern (20 bp):
GTGTGTGTGTGAGGGTGTGG
Left flanking sequence: Indices 27376 -- 27875
GCCAAGAAATACCCCGGGTACCGCTACACCCCGCGGCGCAACGGCAAGCTGAAGAACTGCCCCGC
GTGCCGCCGCCAGGCCATGCGCCCCGCCCCCGCCCCCGCGGTGCCGGTGGTGGACTTCCCCTACC
AGGGCCCGCAACCCGAGGTCTACATGCAGGCGCTGCTGTTTGGGTCGTACCCGCCGCCGTTGTTC
GAGCTGGGCCAGCACACCCCGCAGTACCAGGACAAGTTGCTGCCGTTGCTGGGCCTGCTGCAGGC
GCTTCCCCCCGCGGGCTCGGTGGGGGAGTACCCGCAGCCGCAGTTTGAGCCGCCGGCGGCGGGCC
CGGTGCGGTTCAACCTGTTGCCGACGCCCAACTACTTTGACGGCGGTTTCCAATCATGAATAGAG
AATAAAGGAGACGAATAAAGGAGACGAATAACACGGAGACGGTGTAGAGAGGTGGCTAGGAAGAG
CCCAGGTCTGGGTGTAGAGAAGGTGGAGAACGTGCGAAAAAAGGT
Right flanking sequence: Indices 27934 -- 28433
TGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGAGATAGTAAAGGGTTGGGTGGTGGCT
AGTGTGGTGGGTCTGGACGGGTGGACCTAGTGTAGTGATTTAGCGAGTAGTTCTGGGTTGGACTC
AGGGTAGGTTTATTAGTCTAGTGGGTTGGCCGAATGGGTTGGTTGGTCTAATGGGTTGGCTTAAC
GGGTTTGTCTAGTGGGTACCTAGTGGATCGGTCCAATGGGTTGTTCTAATGGTTGGTTGGCCCAG
TGGGTTGTCAATTGAGTTGACCATTGGGTTGGTCTGATGTGGTCTAGTGGACTGATTCTGTTTGT
GGGTTGGTTTAATGGGTTGGTACGAATTGGTTTTACGGATCAAGTGGGTTGGTCTCGAATTGGAT
TTATGGATGGTCAAGTGGGTTGTTTGGTCCAATGGGTAGCTTGGTTTGTTGAGTTGAACTAGTGA
GTTGGTTGGCTTGATCGGTATAGCTCGTGGGTTGATTCAGAGAGT
Found at i:27940 original size:22 final size:22
Alignment explanation
Indices: 27873--27940 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
27863 TGCGAAAAAA
27873 GGTGTGTGTGTGGGTGG-GTGTG
1 GGTGTGTGTGTGGGTGGTGTG-G
* * *
27895 GGTGGGTGTGTGAGAGGTGTGG
1 GGTGTGTGTGTGGGTGGTGTGG
27917 GGTGTGTGTG-GGGTGTGTGTGG
1 GGTGTGTGTGTGGGTG-GTGTGG
27939 GG
1 GG
27941 GGGGGGGGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
21 3 0.08
22 32 0.84
23 3 0.08
ACGTcount: A:0.03, C:0.00, G:0.65, T:0.32
Consensus pattern (22 bp):
GGTGTGTGTGTGGGTGGTGTGG
Left flanking sequence: Indices 27373 -- 27872
CACGCCAAGAAATACCCCGGGTACCGCTACACCCCGCGGCGCAACGGCAAGCTGAAGAACTGCCC
CGCGTGCCGCCGCCAGGCCATGCGCCCCGCCCCCGCCCCCGCGGTGCCGGTGGTGGACTTCCCCT
ACCAGGGCCCGCAACCCGAGGTCTACATGCAGGCGCTGCTGTTTGGGTCGTACCCGCCGCCGTTG
TTCGAGCTGGGCCAGCACACCCCGCAGTACCAGGACAAGTTGCTGCCGTTGCTGGGCCTGCTGCA
GGCGCTTCCCCCCGCGGGCTCGGTGGGGGAGTACCCGCAGCCGCAGTTTGAGCCGCCGGCGGCGG
GCCCGGTGCGGTTCAACCTGTTGCCGACGCCCAACTACTTTGACGGCGGTTTCCAATCATGAATA
GAGAATAAAGGAGACGAATAAAGGAGACGAATAACACGGAGACGGTGTAGAGAGGTGGCTAGGAA
GAGCCCAGGTCTGGGTGTAGAGAAGGTGGAGAACGTGCGAAAAAA
Right flanking sequence: Indices 27941 -- 28440
GGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGAGATAGTAAAGGGTTGGGTGGTGGCTAGTGTGG
TGGGTCTGGACGGGTGGACCTAGTGTAGTGATTTAGCGAGTAGTTCTGGGTTGGACTCAGGGTAG
GTTTATTAGTCTAGTGGGTTGGCCGAATGGGTTGGTTGGTCTAATGGGTTGGCTTAACGGGTTTG
TCTAGTGGGTACCTAGTGGATCGGTCCAATGGGTTGTTCTAATGGTTGGTTGGCCCAGTGGGTTG
TCAATTGAGTTGACCATTGGGTTGGTCTGATGTGGTCTAGTGGACTGATTCTGTTTGTGGGTTGG
TTTAATGGGTTGGTACGAATTGGTTTTACGGATCAAGTGGGTTGGTCTCGAATTGGATTTATGGA
TGGTCAAGTGGGTTGTTTGGTCCAATGGGTAGCTTGGTTTGTTGAGTTGAACTAGTGAGTTGGTT
GGCTTGATCGGTATAGCTCGTGGGTTGATTCAGAGAGTTTGTCTT
Found at i:27943 original size:1 final size:1
Alignment explanation
Indices: 27937--27972 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
27927 GGGTGTGTGT
*
27937 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
27973 AGATAGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.97, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 27437 -- 27936
CCGCGTGCCGCCGCCAGGCCATGCGCCCCGCCCCCGCCCCCGCGGTGCCGGTGGTGGACTTCCCC
TACCAGGGCCCGCAACCCGAGGTCTACATGCAGGCGCTGCTGTTTGGGTCGTACCCGCCGCCGTT
GTTCGAGCTGGGCCAGCACACCCCGCAGTACCAGGACAAGTTGCTGCCGTTGCTGGGCCTGCTGC
AGGCGCTTCCCCCCGCGGGCTCGGTGGGGGAGTACCCGCAGCCGCAGTTTGAGCCGCCGGCGGCG
GGCCCGGTGCGGTTCAACCTGTTGCCGACGCCCAACTACTTTGACGGCGGTTTCCAATCATGAAT
AGAGAATAAAGGAGACGAATAAAGGAGACGAATAACACGGAGACGGTGTAGAGAGGTGGCTAGGA
AGAGCCCAGGTCTGGGTGTAGAGAAGGTGGAGAACGTGCGAAAAAAGGTGTGTGTGTGGGTGGGT
GTGGGTGGGTGTGTGAGAGGTGTGGGGTGTGTGTGGGGTGTGTGT
Right flanking sequence: Indices 27973 -- 28472
AGATAGTAAAGGGTTGGGTGGTGGCTAGTGTGGTGGGTCTGGACGGGTGGACCTAGTGTAGTGAT
TTAGCGAGTAGTTCTGGGTTGGACTCAGGGTAGGTTTATTAGTCTAGTGGGTTGGCCGAATGGGT
TGGTTGGTCTAATGGGTTGGCTTAACGGGTTTGTCTAGTGGGTACCTAGTGGATCGGTCCAATGG
GTTGTTCTAATGGTTGGTTGGCCCAGTGGGTTGTCAATTGAGTTGACCATTGGGTTGGTCTGATG
TGGTCTAGTGGACTGATTCTGTTTGTGGGTTGGTTTAATGGGTTGGTACGAATTGGTTTTACGGA
TCAAGTGGGTTGGTCTCGAATTGGATTTATGGATGGTCAAGTGGGTTGTTTGGTCCAATGGGTAG
CTTGGTTTGTTGAGTTGAACTAGTGAGTTGGTTGGCTTGATCGGTATAGCTCGTGGGTTGATTCA
GAGAGTTTGTCTTAGGAATTATGTTCTTTGATTGGTCCATGGGTT
Found at i:28107 original size:17 final size:17
Alignment explanation
Indices: 28087--28122 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
28077 TAGTCTAGTG
28087 GGTTGGCCGAATGGGTT
1 GGTTGGCCGAATGGGTT
* *
28104 GGTTGGTCTAATGGGTT
1 GGTTGGCCGAATGGGTT
28121 GG
1 GG
28123 CTTAACGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.08, G:0.47, T:0.33
Consensus pattern (17 bp):
GGTTGGCCGAATGGGTT
Left flanking sequence: Indices 27587 -- 28086
CCCCGCAGTACCAGGACAAGTTGCTGCCGTTGCTGGGCCTGCTGCAGGCGCTTCCCCCCGCGGGC
TCGGTGGGGGAGTACCCGCAGCCGCAGTTTGAGCCGCCGGCGGCGGGCCCGGTGCGGTTCAACCT
GTTGCCGACGCCCAACTACTTTGACGGCGGTTTCCAATCATGAATAGAGAATAAAGGAGACGAAT
AAAGGAGACGAATAACACGGAGACGGTGTAGAGAGGTGGCTAGGAAGAGCCCAGGTCTGGGTGTA
GAGAAGGTGGAGAACGTGCGAAAAAAGGTGTGTGTGTGGGTGGGTGTGGGTGGGTGTGTGAGAGG
TGTGGGGTGTGTGTGGGGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGAGAT
AGTAAAGGGTTGGGTGGTGGCTAGTGTGGTGGGTCTGGACGGGTGGACCTAGTGTAGTGATTTAG
CGAGTAGTTCTGGGTTGGACTCAGGGTAGGTTTATTAGTCTAGTG
Right flanking sequence: Indices 28123 -- 28622
CTTAACGGGTTTGTCTAGTGGGTACCTAGTGGATCGGTCCAATGGGTTGTTCTAATGGTTGGTTG
GCCCAGTGGGTTGTCAATTGAGTTGACCATTGGGTTGGTCTGATGTGGTCTAGTGGACTGATTCT
GTTTGTGGGTTGGTTTAATGGGTTGGTACGAATTGGTTTTACGGATCAAGTGGGTTGGTCTCGAA
TTGGATTTATGGATGGTCAAGTGGGTTGTTTGGTCCAATGGGTAGCTTGGTTTGTTGAGTTGAAC
TAGTGAGTTGGTTGGCTTGATCGGTATAGCTCGTGGGTTGATTCAGAGAGTTTGTCTTAGGAATT
ATGTTCTTTGATTGGTCCATGGGTTGGTCCACTGGGTTGGTGGTTCAGTGGGTTGAACAACCGGA
ATGGTATCCTGGTTTGGTCTCGCGAGTTGGTCTGTTGGATTGGTTTCATCGACTGGCTCAGTGGT
ATGGCCTAGTGGGTTGATTTGATGGGATGGTTAGTCTACTGGGTT
Found at i:28476 original size:12 final size:13
Alignment explanation
Indices: 28459--28488 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
28449 TGTTCTTTGA
28459 TTGGTCCA-TGGG
1 TTGGTCCACTGGG
28471 TTGGTCCACTGGG
1 TTGGTCCACTGGG
28484 TTGGT
1 TTGGT
28489 GGTTCAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.07, C:0.17, G:0.40, T:0.37
Consensus pattern (13 bp):
TTGGTCCACTGGG
Left flanking sequence: Indices 27959 -- 28458
GGGGGGGGGNGGGGAGATAGTAAAGGGTTGGGTGGTGGCTAGTGTGGTGGGTCTGGACGGGTGGA
CCTAGTGTAGTGATTTAGCGAGTAGTTCTGGGTTGGACTCAGGGTAGGTTTATTAGTCTAGTGGG
TTGGCCGAATGGGTTGGTTGGTCTAATGGGTTGGCTTAACGGGTTTGTCTAGTGGGTACCTAGTG
GATCGGTCCAATGGGTTGTTCTAATGGTTGGTTGGCCCAGTGGGTTGTCAATTGAGTTGACCATT
GGGTTGGTCTGATGTGGTCTAGTGGACTGATTCTGTTTGTGGGTTGGTTTAATGGGTTGGTACGA
ATTGGTTTTACGGATCAAGTGGGTTGGTCTCGAATTGGATTTATGGATGGTCAAGTGGGTTGTTT
GGTCCAATGGGTAGCTTGGTTTGTTGAGTTGAACTAGTGAGTTGGTTGGCTTGATCGGTATAGCT
CGTGGGTTGATTCAGAGAGTTTGTCTTAGGAATTATGTTCTTTGA
Right flanking sequence: Indices 28489 -- 28988
GGTTCAGTGGGTTGAACAACCGGAATGGTATCCTGGTTTGGTCTCGCGAGTTGGTCTGTTGGATT
GGTTTCATCGACTGGCTCAGTGGTATGGCCTAGTGGGTTGATTTGATGGGATGGTTAGTCTACTG
GGTTGGTTTAGAGGGTTGTTCTAGTGGGTTGACTCAGTGGATTGACTCAGTTGGTTAATTGGAGT
TGGTTGAATTAGTGGGCTGGCCAGTTTAGTGATGAGTTCAGTGGATTGATCCACTAATTGGTTTA
TTTGTTCACTGGGTTGGGTGTTCAGCCGTGTAGAACAGTAGGTTGGCCGAGGTGGTCAGAGTAGG
TGGTTAGAGTGGGTGATTTGAGTGGATAGTCGTAGTAGTGGTCATAGTAGTGGTCAGAGTAGTGG
TCACAGTAGTGGACATTGGGCGTAGGTGGCCAGTTTCGGGCTCGTTCTTAAAACCATCGATTATG
CTGGTGGACTGTGCCAAAAAACTTGTCTTGGTACGGGACCACCTG
Found at i:28657 original size:13 final size:13
Alignment explanation
Indices: 28641--28674 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
28631 GGGTTGTTCT
28641 AGTGGGTTGACTC
1 AGTGGGTTGACTC
*
28654 AGTGGATTGACTC
1 AGTGGGTTGACTC
*
28667 AGTTGGTT
1 AGTGGGTT
28675 AATTGGAGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.35
Consensus pattern (13 bp):
AGTGGGTTGACTC
Left flanking sequence: Indices 28141 -- 28640
TGGGTACCTAGTGGATCGGTCCAATGGGTTGTTCTAATGGTTGGTTGGCCCAGTGGGTTGTCAAT
TGAGTTGACCATTGGGTTGGTCTGATGTGGTCTAGTGGACTGATTCTGTTTGTGGGTTGGTTTAA
TGGGTTGGTACGAATTGGTTTTACGGATCAAGTGGGTTGGTCTCGAATTGGATTTATGGATGGTC
AAGTGGGTTGTTTGGTCCAATGGGTAGCTTGGTTTGTTGAGTTGAACTAGTGAGTTGGTTGGCTT
GATCGGTATAGCTCGTGGGTTGATTCAGAGAGTTTGTCTTAGGAATTATGTTCTTTGATTGGTCC
ATGGGTTGGTCCACTGGGTTGGTGGTTCAGTGGGTTGAACAACCGGAATGGTATCCTGGTTTGGT
CTCGCGAGTTGGTCTGTTGGATTGGTTTCATCGACTGGCTCAGTGGTATGGCCTAGTGGGTTGAT
TTGATGGGATGGTTAGTCTACTGGGTTGGTTTAGAGGGTTGTTCT
Right flanking sequence: Indices 28675 -- 29174
AATTGGAGTTGGTTGAATTAGTGGGCTGGCCAGTTTAGTGATGAGTTCAGTGGATTGATCCACTA
ATTGGTTTATTTGTTCACTGGGTTGGGTGTTCAGCCGTGTAGAACAGTAGGTTGGCCGAGGTGGT
CAGAGTAGGTGGTTAGAGTGGGTGATTTGAGTGGATAGTCGTAGTAGTGGTCATAGTAGTGGTCA
GAGTAGTGGTCACAGTAGTGGACATTGGGCGTAGGTGGCCAGTTTCGGGCTCGTTCTTAAAACCA
TCGATTATGCTGGTGGACTGTGCCAAAAAACTTGTCTTGGTACGGGACCACCTGGACCGGCTTTG
TAACACGCCAATTGGTCTGGTAGTCCCGGGATAGCCTCGAGACAATACCCGTTTACGACCGCCAG
AAGCTTATTTCGGCCAAGCCCGCGAAGGGTCTGGTGGTGGGTGGCTGGTGGAGAGACCGGTTAAA
AGAACGACAAGACCACTCGAAACGCCACCACCGCCGTGCTGAAGG
Found at i:28816 original size:13 final size:13
Alignment explanation
Indices: 28798--28887 Score: 55
Period size: 12 Copynumber: 7.2 Consensus size: 13
28788 AGGTTGGCCG
28798 AGGTGGTCAGAGT
1 AGGTGGTCAGAGT
*
28811 AGGTGGTTAGAGT
1 AGGTGGTCAGAGT
* * **
28824 GGGTGATTTGAGT
1 AGGTGGTCAGAGT
*
28837 -GGATAGTC-GTAGT
1 AGG-TGGTCAG-AGT
*
28850 A-GTGGTCATAGT
1 AGGTGGTCAGAGT
28862 A-GTGGTCAGAGT
1 AGGTGGTCAGAGT
*
28874 A-GTGGTCACAGT
1 AGGTGGTCAGAGT
28886 AG
1 AG
28888 TGGACATTGG
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
12 33 0.54
13 28 0.46
ACGTcount: A:0.23, C:0.07, G:0.41, T:0.29
Consensus pattern (13 bp):
AGGTGGTCAGAGT
Left flanking sequence: Indices 28298 -- 28797
TCAAGTGGGTTGGTCTCGAATTGGATTTATGGATGGTCAAGTGGGTTGTTTGGTCCAATGGGTAG
CTTGGTTTGTTGAGTTGAACTAGTGAGTTGGTTGGCTTGATCGGTATAGCTCGTGGGTTGATTCA
GAGAGTTTGTCTTAGGAATTATGTTCTTTGATTGGTCCATGGGTTGGTCCACTGGGTTGGTGGTT
CAGTGGGTTGAACAACCGGAATGGTATCCTGGTTTGGTCTCGCGAGTTGGTCTGTTGGATTGGTT
TCATCGACTGGCTCAGTGGTATGGCCTAGTGGGTTGATTTGATGGGATGGTTAGTCTACTGGGTT
GGTTTAGAGGGTTGTTCTAGTGGGTTGACTCAGTGGATTGACTCAGTTGGTTAATTGGAGTTGGT
TGAATTAGTGGGCTGGCCAGTTTAGTGATGAGTTCAGTGGATTGATCCACTAATTGGTTTATTTG
TTCACTGGGTTGGGTGTTCAGCCGTGTAGAACAGTAGGTTGGCCG
Right flanking sequence: Indices 28888 -- 29387
TGGACATTGGGCGTAGGTGGCCAGTTTCGGGCTCGTTCTTAAAACCATCGATTATGCTGGTGGAC
TGTGCCAAAAAACTTGTCTTGGTACGGGACCACCTGGACCGGCTTTGTAACACGCCAATTGGTCT
GGTAGTCCCGGGATAGCCTCGAGACAATACCCGTTTACGACCGCCAGAAGCTTATTTCGGCCAAG
CCCGCGAAGGGTCTGGTGGTGGGTGGCTGGTGGAGAGACCGGTTAAAAGAACGACAAGACCACTC
GAAACGCCACCACCGCCGTGCTGAAGGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCA
GCAGCCAGAGTGGGCCTACCAGCGGCTCATTCGCAGTTTTAGCCACTATTGCTCGCTCAGTCCGG
GCCATAGTGTGTTCTGTGGGGTAACTACTAGGGTGGGCTGGAAATAAGGTTCGTGGTGGAAATAA
GTGGTGTTAGGCGGTGGGGGCCGTCTGTTTGGGCACCGTGGGGGT
Found at i:28863 original size:12 final size:12
Alignment explanation
Indices: 28846--28890 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
28836 TGGATAGTCG
28846 TAGTAGTGGTCA
1 TAGTAGTGGTCA
28858 TAGTAGTGGTCA
1 TAGTAGTGGTCA
*
28870 GAGTAGTGGTCA
1 TAGTAGTGGTCA
*
28882 CAGTAGTGG
1 TAGTAGTGG
28891 ACATTGGGCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.24, C:0.09, G:0.38, T:0.29
Consensus pattern (12 bp):
TAGTAGTGGTCA
Left flanking sequence: Indices 28346 -- 28845
TTTGGTCCAATGGGTAGCTTGGTTTGTTGAGTTGAACTAGTGAGTTGGTTGGCTTGATCGGTATA
GCTCGTGGGTTGATTCAGAGAGTTTGTCTTAGGAATTATGTTCTTTGATTGGTCCATGGGTTGGT
CCACTGGGTTGGTGGTTCAGTGGGTTGAACAACCGGAATGGTATCCTGGTTTGGTCTCGCGAGTT
GGTCTGTTGGATTGGTTTCATCGACTGGCTCAGTGGTATGGCCTAGTGGGTTGATTTGATGGGAT
GGTTAGTCTACTGGGTTGGTTTAGAGGGTTGTTCTAGTGGGTTGACTCAGTGGATTGACTCAGTT
GGTTAATTGGAGTTGGTTGAATTAGTGGGCTGGCCAGTTTAGTGATGAGTTCAGTGGATTGATCC
ACTAATTGGTTTATTTGTTCACTGGGTTGGGTGTTCAGCCGTGTAGAACAGTAGGTTGGCCGAGG
TGGTCAGAGTAGGTGGTTAGAGTGGGTGATTTGAGTGGATAGTCG
Right flanking sequence: Indices 28891 -- 29390
ACATTGGGCGTAGGTGGCCAGTTTCGGGCTCGTTCTTAAAACCATCGATTATGCTGGTGGACTGT
GCCAAAAAACTTGTCTTGGTACGGGACCACCTGGACCGGCTTTGTAACACGCCAATTGGTCTGGT
AGTCCCGGGATAGCCTCGAGACAATACCCGTTTACGACCGCCAGAAGCTTATTTCGGCCAAGCCC
GCGAAGGGTCTGGTGGTGGGTGGCTGGTGGAGAGACCGGTTAAAAGAACGACAAGACCACTCGAA
ACGCCACCACCGCCGTGCTGAAGGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGCA
GCCAGAGTGGGCCTACCAGCGGCTCATTCGCAGTTTTAGCCACTATTGCTCGCTCAGTCCGGGCC
ATAGTGTGTTCTGTGGGGTAACTACTAGGGTGGGCTGGAAATAAGGTTCGTGGTGGAAATAAGTG
GTGTTAGGCGGTGGGGGCCGTCTGTTTGGGCACCGTGGGGGTGGT
Found at i:29568 original size:21 final size:20
Alignment explanation
Indices: 29529--29574 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
29519 GAGCGCAAAT
*
29529 AGGGTAAAGAGGGTAAAAAG
1 AGGGTAAAGAGGGTAAAAAC
* *
29549 AGGGTAAAATAGGGTGAAAAC
1 AGGGT-AAAGAGGGTAAAAAC
29570 AGGGT
1 AGGGT
29575 GTAGAGTGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.46, C:0.02, G:0.39, T:0.13
Consensus pattern (20 bp):
AGGGTAAAGAGGGTAAAAAC
Left flanking sequence: Indices 29029 -- 29528
GATAGCCTCGAGACAATACCCGTTTACGACCGCCAGAAGCTTATTTCGGCCAAGCCCGCGAAGGG
TCTGGTGGTGGGTGGCTGGTGGAGAGACCGGTTAAAAGAACGACAAGACCACTCGAAACGCCACC
ACCGCCGTGCTGAAGGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGCAGCCAGAGT
GGGCCTACCAGCGGCTCATTCGCAGTTTTAGCCACTATTGCTCGCTCAGTCCGGGCCATAGTGTG
TTCTGTGGGGTAACTACTAGGGTGGGCTGGAAATAAGGTTCGTGGTGGAAATAAGTGGTGTTAGG
CGGTGGGGGCCGTCTGTTTGGGCACCGTGGGGGTGGTCGCCCGGGTTTCTCCCGCGCCAGCGATA
GCGTGGCTGTTTTGGGCGGTGTCTGAGACATTACCCGTTTGGGACACCCGACTGGACACCCAACT
TGGATGCGAACCCGGGCCAAAGCGAGAAGTAGAAGGAGCGCAAAT
Right flanking sequence: Indices 29575 -- 30074
GTAGAGTGTGAGAAAATTACACCGGTGGGGTTTTTACGGGTGGTTTGCCCTTTCGTGTGGTGGTT
TGCGGTCATTGTGTCTGTCTCGGATCTCCTCCAGAACGATCTCGGTATCGTCTCCTGTGGGGGTG
CTAGGCACGGTTACTTCATTGTGCGGCTCGTATTAGGGGGCCCAGCACAGCCTCTTGGAGTTCCG
GTATGATTCACCATCGCTGCATGTACCCGGACGAATAAGGTATTCCGGGGCGTCGATATTATGAG
ATAGAGTTTGGATGCTGTGGGGGCTAAATAGAGTTTGAGATGGGAGATTGGTGGAGATAGGAGGT
GGTGGTGGGAGAGGTGGTGGGGTAGTGGTGGTGGAGGTGGAGGTGGTGGTAGTGATAGTGGTAGT
AGTGTTAGGGGAGTTTAGATTGGTGGTGGCTAAAAAGTGAACCGTGTGGATTTGGTGTGGTGGTG
AGACGGTTGCTGGGCTAGGAAGCTGGAAAAAAGGATAGTGAGGTT
Found at i:30326 original size:23 final size:23
Alignment explanation
Indices: 30295--30402 Score: 126
Period size: 23 Copynumber: 4.7 Consensus size: 23
30285 CCAATTTCAC
* * * *
30295 AACCATTCTCCCAACTAATATTT
1 AACCCTTCTCTCAACCAGTATTT
30318 AACCCTTCTCTCAACCAGTATTT
1 AACCCTTCTCTCAACCAGTATTT
30341 AACCCTTCTCTCAACCAGTATTT
1 AACCCTTCTCTCAACCAGTATTT
* * * *
30364 AACCATTTTCTCAACCATTACTT
1 AACCCTTCTCTCAACCAGTATTT
* *
30387 AACCATTTTCTCAACC
1 AACCCTTCTCTCAACC
30403 CTTACTTAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 77 1.00
ACGTcount: A:0.30, C:0.33, G:0.02, T:0.35
Consensus pattern (23 bp):
AACCCTTCTCTCAACCAGTATTT
Left flanking sequence: Indices 29795 -- 30294
CCCGGACGAATAAGGTATTCCGGGGCGTCGATATTATGAGATAGAGTTTGGATGCTGTGGGGGCT
AAATAGAGTTTGAGATGGGAGATTGGTGGAGATAGGAGGTGGTGGTGGGAGAGGTGGTGGGGTAG
TGGTGGTGGAGGTGGAGGTGGTGGTAGTGATAGTGGTAGTAGTGTTAGGGGAGTTTAGATTGGTG
GTGGCTAAAAAGTGAACCGTGTGGATTTGGTGTGGTGGTGAGACGGTTGCTGGGCTAGGAAGCTG
GAAAAAAGGATAGTGAGGTTATAGAGAACTCTGGTTTGGGTGGTAGTGCACGAGAAGAGCTGGTT
ACGTCTCGTGGTTGAGTTGTGAGAGTGTATGCGTTCCAGGTAGAGTGGTAGGACGACACATGGAC
CAGCCAATTAACCGTTTACTTACACGCCAGAGAAGACAGTACCAGCTATCACAAGTGGAACAGCC
ACCTAACAGCCACCACTGCTTCACCATTTTCTCAACCAATTTCAC
Right flanking sequence: Indices 30403 -- 30902
CTTACTTAAAATTCCCTGAACGAACCATTACTCAACCATTACTCAACCACTATACGAAGACATTA
CCTCACTCCCCGTACAAAGCCACCACCAAAGCCACCCACCAAGGTGACCCAAAGTGGCCCAAAGT
GGCCCAAAGTCCACATATGCCTCTAAAAGCTCTCTCTAAAAGCCCTCCACCCCACCTCACCCAAC
CTGTAGACCTCCGTCCCGACCAACCAAATCACCCCATCTCCACCGCCTGCTCCCCTGGCCCACCA
CAGCCTCGCCACGGAGAACACCGCAGGACCCCGGCGCGGGCAGGCGGTCGCGACCAATGTCGTCT
TCTAGACTACGTTGCCTCCGCTATCATGTCTACTTCGATGACGTTACTGGAGACGCCGTAGCGAC
GAGAGCCACAGTCAAGCGGAACCGACCCGAAAGCGCAAAAATGGCGCCTCGCGGACACCTTCTAC
AAACCCCTCGAGTGGACTGTCTGATCTACCGGGCCAAAACGCCGT
Found at i:30381 original size:12 final size:12
Alignment explanation
Indices: 30272--30402 Score: 60
Period size: 12 Copynumber: 11.2 Consensus size: 12
30262 CCACTGCTTC
30272 ACCATTTTCTCA
1 ACCATTTTCTCA
* *
30284 ACCAATTTCACA
1 ACCATTTTCTCA
* *
30296 ACCATTCTCCCA
1 ACCATTTTCTCA
* *
30308 ACTAATATT-T-A
1 AC-CATTTTCTCA
* *
30319 ACCCTTCTCTCA
1 ACCATTTTCTCA
*
30331 ACCAGTATT-T-A
1 ACCA-TTTTCTCA
* *
30342 ACCCTTCTCTCA
1 ACCATTTTCTCA
*
30354 ACCAGTATT-T-A
1 ACCA-TTTTCTCA
30365 ACCATTTTCTCA
1 ACCATTTTCTCA
* *
30377 ACCA-TTACTTA
1 ACCATTTTCTCA
30388 ACCATTTTCTCA
1 ACCATTTTCTCA
30400 ACC
1 ACC
30403 CTTACTTAAA
Statistics
Matches: 82, Mismatches: 27, Indels: 20
0.64 0.21 0.16
Matches are distributed among these distances:
10 7 0.09
11 24 0.29
12 44 0.54
13 7 0.09
ACGTcount: A:0.30, C:0.34, G:0.02, T:0.35
Consensus pattern (12 bp):
ACCATTTTCTCA
Left flanking sequence: Indices 29772 -- 30271
ATGATTCACCATCGCTGCATGTACCCGGACGAATAAGGTATTCCGGGGCGTCGATATTATGAGAT
AGAGTTTGGATGCTGTGGGGGCTAAATAGAGTTTGAGATGGGAGATTGGTGGAGATAGGAGGTGG
TGGTGGGAGAGGTGGTGGGGTAGTGGTGGTGGAGGTGGAGGTGGTGGTAGTGATAGTGGTAGTAG
TGTTAGGGGAGTTTAGATTGGTGGTGGCTAAAAAGTGAACCGTGTGGATTTGGTGTGGTGGTGAG
ACGGTTGCTGGGCTAGGAAGCTGGAAAAAAGGATAGTGAGGTTATAGAGAACTCTGGTTTGGGTG
GTAGTGCACGAGAAGAGCTGGTTACGTCTCGTGGTTGAGTTGTGAGAGTGTATGCGTTCCAGGTA
GAGTGGTAGGACGACACATGGACCAGCCAATTAACCGTTTACTTACACGCCAGAGAAGACAGTAC
CAGCTATCACAAGTGGAACAGCCACCTAACAGCCACCACTGCTTC
Right flanking sequence: Indices 30403 -- 30902
CTTACTTAAAATTCCCTGAACGAACCATTACTCAACCATTACTCAACCACTATACGAAGACATTA
CCTCACTCCCCGTACAAAGCCACCACCAAAGCCACCCACCAAGGTGACCCAAAGTGGCCCAAAGT
GGCCCAAAGTCCACATATGCCTCTAAAAGCTCTCTCTAAAAGCCCTCCACCCCACCTCACCCAAC
CTGTAGACCTCCGTCCCGACCAACCAAATCACCCCATCTCCACCGCCTGCTCCCCTGGCCCACCA
CAGCCTCGCCACGGAGAACACCGCAGGACCCCGGCGCGGGCAGGCGGTCGCGACCAATGTCGTCT
TCTAGACTACGTTGCCTCCGCTATCATGTCTACTTCGATGACGTTACTGGAGACGCCGTAGCGAC
GAGAGCCACAGTCAAGCGGAACCGACCCGAAAGCGCAAAAATGGCGCCTCGCGGACACCTTCTAC
AAACCCCTCGAGTGGACTGTCTGATCTACCGGGCCAAAACGCCGT
Found at i:30441 original size:11 final size:11
Alignment explanation
Indices: 30425--30451 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
30415 TCCCTGAACG
30425 AACCATTACTC
1 AACCATTACTC
30436 AACCATTACTC
1 AACCATTACTC
30447 AACCA
1 AACCA
30452 CTATACGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (11 bp):
AACCATTACTC
Left flanking sequence: Indices 29925 -- 30424
TGGTGGTGGAGGTGGAGGTGGTGGTAGTGATAGTGGTAGTAGTGTTAGGGGAGTTTAGATTGGTG
GTGGCTAAAAAGTGAACCGTGTGGATTTGGTGTGGTGGTGAGACGGTTGCTGGGCTAGGAAGCTG
GAAAAAAGGATAGTGAGGTTATAGAGAACTCTGGTTTGGGTGGTAGTGCACGAGAAGAGCTGGTT
ACGTCTCGTGGTTGAGTTGTGAGAGTGTATGCGTTCCAGGTAGAGTGGTAGGACGACACATGGAC
CAGCCAATTAACCGTTTACTTACACGCCAGAGAAGACAGTACCAGCTATCACAAGTGGAACAGCC
ACCTAACAGCCACCACTGCTTCACCATTTTCTCAACCAATTTCACAACCATTCTCCCAACTAATA
TTTAACCCTTCTCTCAACCAGTATTTAACCCTTCTCTCAACCAGTATTTAACCATTTTCTCAACC
ATTACTTAACCATTTTCTCAACCCTTACTTAAAATTCCCTGAACG
Right flanking sequence: Indices 30452 -- 30951
CTATACGAAGACATTACCTCACTCCCCGTACAAAGCCACCACCAAAGCCACCCACCAAGGTGACC
CAAAGTGGCCCAAAGTGGCCCAAAGTCCACATATGCCTCTAAAAGCTCTCTCTAAAAGCCCTCCA
CCCCACCTCACCCAACCTGTAGACCTCCGTCCCGACCAACCAAATCACCCCATCTCCACCGCCTG
CTCCCCTGGCCCACCACAGCCTCGCCACGGAGAACACCGCAGGACCCCGGCGCGGGCAGGCGGTC
GCGACCAATGTCGTCTTCTAGACTACGTTGCCTCCGCTATCATGTCTACTTCGATGACGTTACTG
GAGACGCCGTAGCGACGAGAGCCACAGTCAAGCGGAACCGACCCGAAAGCGCAAAAATGGCGCCT
CGCGGACACCTTCTACAAACCCCTCGAGTGGACTGTCTGATCTACCGGGCCAAAACGCCGTTTGG
GCCTCCTGCCAGAGCAACCTTTGGGTGGTGTCCCTGTGTGGTGTT
Found at i:30528 original size:10 final size:10
Alignment explanation
Indices: 30515--30542 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
30505 ACCAAGGTGA
30515 CCCAAAGTGG
1 CCCAAAGTGG
30525 CCCAAAGTGG
1 CCCAAAGTGG
30535 CCCAAAGT
1 CCCAAAGT
30543 CCACATATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.11
Consensus pattern (10 bp):
CCCAAAGTGG
Left flanking sequence: Indices 30015 -- 30514
TTTGGTGTGGTGGTGAGACGGTTGCTGGGCTAGGAAGCTGGAAAAAAGGATAGTGAGGTTATAGA
GAACTCTGGTTTGGGTGGTAGTGCACGAGAAGAGCTGGTTACGTCTCGTGGTTGAGTTGTGAGAG
TGTATGCGTTCCAGGTAGAGTGGTAGGACGACACATGGACCAGCCAATTAACCGTTTACTTACAC
GCCAGAGAAGACAGTACCAGCTATCACAAGTGGAACAGCCACCTAACAGCCACCACTGCTTCACC
ATTTTCTCAACCAATTTCACAACCATTCTCCCAACTAATATTTAACCCTTCTCTCAACCAGTATT
TAACCCTTCTCTCAACCAGTATTTAACCATTTTCTCAACCATTACTTAACCATTTTCTCAACCCT
TACTTAAAATTCCCTGAACGAACCATTACTCAACCATTACTCAACCACTATACGAAGACATTACC
TCACTCCCCGTACAAAGCCACCACCAAAGCCACCCACCAAGGTGA
Right flanking sequence: Indices 30543 -- 31042
CCACATATGCCTCTAAAAGCTCTCTCTAAAAGCCCTCCACCCCACCTCACCCAACCTGTAGACCT
CCGTCCCGACCAACCAAATCACCCCATCTCCACCGCCTGCTCCCCTGGCCCACCACAGCCTCGCC
ACGGAGAACACCGCAGGACCCCGGCGCGGGCAGGCGGTCGCGACCAATGTCGTCTTCTAGACTAC
GTTGCCTCCGCTATCATGTCTACTTCGATGACGTTACTGGAGACGCCGTAGCGACGAGAGCCACA
GTCAAGCGGAACCGACCCGAAAGCGCAAAAATGGCGCCTCGCGGACACCTTCTACAAACCCCTCG
AGTGGACTGTCTGATCTACCGGGCCAAAACGCCGTTTGGGCCTCCTGCCAGAGCAACCTTTGGGT
GGTGTCCCTGTGTGGTGTTCTGTGTTGTGTCCCTGTGTGGAGGTGTTTCCGGGTGGGTGGAGGTG
CTGTGTCGCGGTGCTTTTTGCAGTGTGCGGAATGTGCGTTGGGCG
Found at i:30957 original size:12 final size:13
Alignment explanation
Indices: 30931--30972 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
30921 CAACCTTTGG
30931 GTGGTGTCCCTGT
1 GTGGTGTCCCTGT
*
30944 GTGGTGT-TCTGT
1 GTGGTGTCCCTGT
*
30956 GTTGTGTCCCTGT
1 GTGGTGTCCCTGT
30969 GTGG
1 GTGG
30973 AGGTGTTTCC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.00, C:0.17, G:0.40, T:0.43
Consensus pattern (13 bp):
GTGGTGTCCCTGT
Left flanking sequence: Indices 30431 -- 30930
TACTCAACCATTACTCAACCACTATACGAAGACATTACCTCACTCCCCGTACAAAGCCACCACCA
AAGCCACCCACCAAGGTGACCCAAAGTGGCCCAAAGTGGCCCAAAGTCCACATATGCCTCTAAAA
GCTCTCTCTAAAAGCCCTCCACCCCACCTCACCCAACCTGTAGACCTCCGTCCCGACCAACCAAA
TCACCCCATCTCCACCGCCTGCTCCCCTGGCCCACCACAGCCTCGCCACGGAGAACACCGCAGGA
CCCCGGCGCGGGCAGGCGGTCGCGACCAATGTCGTCTTCTAGACTACGTTGCCTCCGCTATCATG
TCTACTTCGATGACGTTACTGGAGACGCCGTAGCGACGAGAGCCACAGTCAAGCGGAACCGACCC
GAAAGCGCAAAAATGGCGCCTCGCGGACACCTTCTACAAACCCCTCGAGTGGACTGTCTGATCTA
CCGGGCCAAAACGCCGTTTGGGCCTCCTGCCAGAGCAACCTTTGG
Right flanking sequence: Indices 30973 -- 31472
AGGTGTTTCCGGGTGGGTGGAGGTGCTGTGTCGCGGTGCTTTTTGCAGTGTGCGGAATGTGCGTT
GGGCGTTAGCACGAGCCAACGCGATTTAGCGCACTGTGCGGCGACCAAGCCTCGGCCACAAAGAC
GCTCCGGTGGGGGTGTGGCCAAATGCGGCGATATCCCACCTGGCTTTAGCAACGTTACCCAGTGG
GGCGTGTGTCGTCTCAAACAGGCACTGCTGCCACCGCGGCTACTGGTTACGAGTGCGCGCTGCTG
AGGTGCTGCACCGAACCTGGCAAGTGCATCACCGTGCACCGAGGTGCTTGGCACCTGTGTGGAAC
GCTTGCAGGCCCACGAGGAGACAGCGAACTCCAGCTCCAGGGAAAATAAACCTAAACCTACTGTC
TCCGATCGTAGATCCGACACCCTTGGCACCAGCCCGACACGCCAAACGACGGTCGGAGTCTGCGG
AGAACCGTGCCAGCCCGCGCGATGGCCCATTTTGCCGATCCCCCA
Found at i:32165 original size:16 final size:16
Alignment explanation
Indices: 32144--32205 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
32134 CAACTAGTGC
32144 AGTAGTGTAGTATTTT
1 AGTAGTGTAGTATTTT
*
32160 AGTAGTATAGTATTTT
1 AGTAGTGTAGTATTTT
**
32176 AGTAGTGTAAAATTTT
1 AGTAGTGTAGTATTTT
*
32192 AGTATTGTAGTATT
1 AGTAGTGTAGTATT
32206 AGTAAATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (16 bp):
AGTAGTGTAGTATTTT
Left flanking sequence: Indices 31644 -- 32143
GAGGTGCTCGGAGGTGCACCGCTTACGAGGTGCAATGCCACAAAGCACCAGCGGCAGTGTATAAC
CGAGGCCCACCCGAGGCCCACCCAGGCGTCAATTCGAACCCCAGACGGGCGTGAGCCTCGTGGGC
ACGTCAGACGCAGCCGCCGGAGATAGCCCACCTGCAAATGTGGGCTCGATGCCGGTTTTTCTTGG
ACCACTATCGCATATGTATGGGCCGGCCCAACTGTCGGCACAACTAGAGCCAGGTAATATCTCAA
CTCGATGCAAGGAGACCCTGCAACGGCAAAATGTAACCCTCGTCGTAGCTGCACTGCCCACACCG
CCATTTGTGATCTCGACACCTATTGTTTCGGGGTTCCGAGATTGACAGGACATTGTTCGGGACGA
GATGAGATGAAACAACGGTCGCAGGCACAGTCACCGCAACCACTAATCTACGCTGTTGATGCACA
CGCTATTCCCGTGACATTTTTCACGTTCAGCATACCAACTAGTGC
Right flanking sequence: Indices 32206 -- 32705
AGTAAATTATTAGGCCTAACCAGATACACGGAAATAATGTGCGGAGATTACAGGCAGGTGGTGGC
AGACACCGATGGCGACACAGGGCTGGTAAAAAATAGTCCGGTGACGGGAAAAAATAGAACCTCCC
TGGCATGTGCCCACGGCAACTATACCCTGGGTGTCGCTACAAAAACCACTATTATGAGGCGTTGT
TTGACGGTGCACCACGATGACGCGGGCCAGGACCGTTACACCGACAGCAGACCCGTGGTTCTGCA
GCCACCGCGGGGGTTGGGGAAGGTTTCTCCGGCCCGCGTCTTGGCGTAAACACATCAAAAGTCAC
ACCACTTGTGCGTGCCAAGGTGGGGTGCCAAGTGCGGTGCCAAGTGCGGAGTAGATGAGGTGCAA
AGCCAGTGCCAAGGGCCTGAAGTGTGGAGGAGGAGGGGAAGCGGGGAGTGCGTGGCACAAAGTCG
TGCCAAGAGAGTGATTCCGAGTCAGGTCATCCGAGCAGTACAAAG
Found at i:32571 original size:12 final size:12
Alignment explanation
Indices: 32538--32579 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
32528 CACACCACTT
32538 GTGC-GTGCCAA
1 GTGCGGTGCCAA
*
32549 GGTGGGGTGCCAA
1 -GTGCGGTGCCAA
32562 GTGCGGTGCCAA
1 GTGCGGTGCCAA
32574 GTGCGG
1 GTGCGG
32580 AGTAGATGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 20 0.74
13 7 0.26
ACGTcount: A:0.14, C:0.21, G:0.48, T:0.17
Consensus pattern (12 bp):
GTGCGGTGCCAA
Left flanking sequence: Indices 32038 -- 32537
AGATGAAACAACGGTCGCAGGCACAGTCACCGCAACCACTAATCTACGCTGTTGATGCACACGCT
ATTCCCGTGACATTTTTCACGTTCAGCATACCAACTAGTGCAGTAGTGTAGTATTTTAGTAGTAT
AGTATTTTAGTAGTGTAAAATTTTAGTATTGTAGTATTAGTAAATTATTAGGCCTAACCAGATAC
ACGGAAATAATGTGCGGAGATTACAGGCAGGTGGTGGCAGACACCGATGGCGACACAGGGCTGGT
AAAAAATAGTCCGGTGACGGGAAAAAATAGAACCTCCCTGGCATGTGCCCACGGCAACTATACCC
TGGGTGTCGCTACAAAAACCACTATTATGAGGCGTTGTTTGACGGTGCACCACGATGACGCGGGC
CAGGACCGTTACACCGACAGCAGACCCGTGGTTCTGCAGCCACCGCGGGGGTTGGGGAAGGTTTC
TCCGGCCCGCGTCTTGGCGTAAACACATCAAAAGTCACACCACTT
Right flanking sequence: Indices 32580 -- 33079
AGTAGATGAGGTGCAAAGCCAGTGCCAAGGGCCTGAAGTGTGGAGGAGGAGGGGAAGCGGGGAGT
GCGTGGCACAAAGTCGTGCCAAGAGAGTGATTCCGAGTCAGGTCATCCGAGCAGTACAAAGCACC
AAGCCAGAACCAAGCGCTGACAAGTACAAAGTAGCCAAAACAATGCCAGCGGTCAGCCAATGCAA
CCGCAGCCGTGCAAGCAACGGGTGCAAAGCAGCCAGTGCAAAACCAGCAGTAATAATCAGTACAA
AGTCGGAATTGACCCAGTACAAAATCAGCTCTGGTTGCATTTGTCCATGTGCTTGGTGCTTCGCA
TGTGCTCGATGCCCGAGAGGTGCACCCGCCATGTGCCTGCCATGTGCCGACACATGTGCCGACAC
ATGTGCTCGTGACACTTAGTCAAGGTTGAGCTTGATCGCCTCGCCCGGCTTGAACGGGGGAAGCC
CAAGGTAGGGACACCCGTCGCACCGGAACGCATCGCCCAACGCAC
Found at i:32962 original size:12 final size:12
Alignment explanation
Indices: 32945--32975 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32935 ATGTGCCTGC
32945 CATGTGCCGACA
1 CATGTGCCGACA
32957 CATGTGCCGACA
1 CATGTGCCGACA
32969 CATGTGC
1 CATGTGC
32976 TCGTGACACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (12 bp):
CATGTGCCGACA
Left flanking sequence: Indices 32445 -- 32944
CAGCAGACCCGTGGTTCTGCAGCCACCGCGGGGGTTGGGGAAGGTTTCTCCGGCCCGCGTCTTGG
CGTAAACACATCAAAAGTCACACCACTTGTGCGTGCCAAGGTGGGGTGCCAAGTGCGGTGCCAAG
TGCGGAGTAGATGAGGTGCAAAGCCAGTGCCAAGGGCCTGAAGTGTGGAGGAGGAGGGGAAGCGG
GGAGTGCGTGGCACAAAGTCGTGCCAAGAGAGTGATTCCGAGTCAGGTCATCCGAGCAGTACAAA
GCACCAAGCCAGAACCAAGCGCTGACAAGTACAAAGTAGCCAAAACAATGCCAGCGGTCAGCCAA
TGCAACCGCAGCCGTGCAAGCAACGGGTGCAAAGCAGCCAGTGCAAAACCAGCAGTAATAATCAG
TACAAAGTCGGAATTGACCCAGTACAAAATCAGCTCTGGTTGCATTTGTCCATGTGCTTGGTGCT
TCGCATGTGCTCGATGCCCGAGAGGTGCACCCGCCATGTGCCTGC
Right flanking sequence: Indices 32976 -- 33475
TCGTGACACTTAGTCAAGGTTGAGCTTGATCGCCTCGCCCGGCTTGAACGGGGGAAGCCCAAGGT
AGGGACACCCGTCGCACCGGAACGCATCGCCCAACGCACACAGCCCACAGCCCCCGGTCTTGCCC
TCCACGGTGAAGTCGATCTCCGCCAACTCGTCCGCACTGAACTGCACCGCAGGACCCTGGGCCCC
GGTGCGGGCCTGGCGCGCAGCGGTGCGGGCCTCGATCGCCTCCGCCTCCGCGGTGGCCAGACGGG
CCATCTTGGAGAGCACCAGCTGCTGCAACAGCTGCTGGTTGGCCAACTCGGCCTCCTCGATCTCC
TTGAGCCCACAGGTGCAGTCCTTGCACGCTTTGCGGCGCTTCTTGAAGGTGCACCCCTGGGGCAA
CTTGATGAGGTTGCCCCCGGCGTCCACCTCATCCTCCTCCACGAGCAGTGCCTCCAGCACCAACC
CGGAGGTGCCAGGGGACGAGAGGAACAGCAACTTCAGCGCGGTCT
Found at i:33950 original size:11 final size:11
Alignment explanation
Indices: 33892--33945 Score: 92
Period size: 11 Copynumber: 4.9 Consensus size: 11
33882 TGTGGTGTGC
33892 GGTGTGCTAGT
1 GGTGTGCTAGT
33903 GGTGTGCTAGT
1 GGTGTGCTAGT
33914 GGTGTGCTAGT
1 GGTGTGCTAGT
33925 GGTGTGCTAGAT
1 GGTGTGCTAG-T
33937 -GTGTGCTAG
1 GGTGTGCTAG
33946 ATGTGCAGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 41 0.98
12 1 0.02
ACGTcount: A:0.11, C:0.09, G:0.44, T:0.35
Consensus pattern (11 bp):
GGTGTGCTAGT
Left flanking sequence: Indices 33392 -- 33891
CCTCATCCTCCTCCACGAGCAGTGCCTCCAGCACCAACCCGGAGGTGCCAGGGGACGAGAGGAAC
AGCAACTTCAGCGCGGTCTTGTCGTTGTTCTTGCGCTTGAGCAGCACCGCGGGGGCGGCCGCGGG
CTTGACCCACTTCTTGTCGCCAAACTCGGGGTCCTCGTCAATGACAAACCCGGCCATGATCACCG
CCAAGTCGTCGTCGGAGGGGAGGTCCCCGTGGAGGGCACCTCCCTCGCGGAGGCCCAGGTGCAAG
AAGCTGAGGAGCTGAGGAGGCATTTCGCGCGCGGAGGAGGGGTTGATGTAGACGATGGCGTCGTA
GCCGTCGCCCAAGTCGACCTCGCCACGGGTCAACCGGTCGATCACCTGCTGGTGGAACTCGTTGG
CGTGGACAAGCCGCTGCTTGTAGGTCTCGACGACCTCGGGCTGGGTCACCACGGTGGGGTGGAGC
AACAAAAGAACTCTCATGGGTGTGTGTAGTATGTGTGTGGTGTGC
Right flanking sequence: Indices 33946 -- 34445
ATGTGCAGTGATGGCTTGTGTCAGTGCACGGGTGCAACGGTGATCTGATTCAGATAACCAGGAAA
ATGCTGTGAAGTAGCGGTAGCAGTAGCAGTAGCTGTAGTTGGTAGTGGCCGCGGAGTAACCTTGG
TGGTAGTCGTGGGCCTTTCGTGACTCTGGGAACGAACGAGCTGAAAAACCTGGGATCGGGGTTTG
TAGATGGCGTAGGTTATTACTAATAATCGCATTTTTTCAGAGTCGCCTGATGGTGGCATGGTAGC
GCGCGTAGCGAGAACGCGGGTGTGACCTATGACTCGAATGGGATTGGTAGGATAGGGCGAGGGGG
CGGTGGAACAACGGGGAGGAGAGCGAAGAAGGGGGTGCAGAGGCGGTGCTGGGTGCGTAAAAGGG
GTCTACTGGGCATTGTTGTAGCTGTCACCGACCAGTGTAACGGCGGTCTCCGGGACCCTCTGGAC
CAGCCGTGCCCGAGCCATGGCATATTATGAATTACAGGAATGCTT
Found at i:34604 original size:21 final size:22
Alignment explanation
Indices: 34574--34614 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
34564 ATGTTAATCT
34574 CTTGTAACATCTC-TTACATTC
1 CTTGTAACATCTCTTTACATTC
* *
34595 CTTGTTACATTTCTTTACAT
1 CTTGTAACATCTCTTTACAT
34615 CTTCATTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.22, C:0.24, G:0.05, T:0.49
Consensus pattern (22 bp):
CTTGTAACATCTCTTTACATTC
Left flanking sequence: Indices 34074 -- 34573
GGTGGTAGTCGTGGGCCTTTCGTGACTCTGGGAACGAACGAGCTGAAAAACCTGGGATCGGGGTT
TGTAGATGGCGTAGGTTATTACTAATAATCGCATTTTTTCAGAGTCGCCTGATGGTGGCATGGTA
GCGCGCGTAGCGAGAACGCGGGTGTGACCTATGACTCGAATGGGATTGGTAGGATAGGGCGAGGG
GGCGGTGGAACAACGGGGAGGAGAGCGAAGAAGGGGGTGCAGAGGCGGTGCTGGGTGCGTAAAAG
GGGTCTACTGGGCATTGTTGTAGCTGTCACCGACCAGTGTAACGGCGGTCTCCGGGACCCTCTGG
ACCAGCCGTGCCCGAGCCATGGCATATTATGAATTACAGGAATGCTTGGCACACGCCGGCGATCA
AACGGTGGTTGTCCCCAGGTGATCAAAATGAAACGGAAAGTGTAATTACACCACCACCACCACCA
AAAACTCCAGGGGGCCATCCACCTGTCCACCTAAAATGTTAATCT
Right flanking sequence: Indices 34615 -- 35114
CTTCATTTCTTAATTTCTCTATTTCTCTGCTCCTCACGTCCTCGTCAAAATCACATGAAGACATC
TCACGTGAGTGTTCCCCATTCTCTGTTCCCATTATTGGGTCCCATATCGGGTCATTATCGGTCCC
ACTACCGGTTCCCTACCAGTTTGGGACCGCTTCCACCATCTGTTTCAGATCGCTGGTAAATTCCC
TGGGTGCTTGGCCACAATAGTCTAAGATTGCGGCGACGCAGCGAACTATGCCAACAATGGCCCTG
CCAGCGGTCGCACGACCGGGCCCCCGGGGCTCCCAGCAACATCCGCGGTAAACACACATTCCCCG
TTTCGGTAGCGTTTCACCTCGATTCAGGGACACAGCCCCCATCTCCCCCAGGTGGCAATAGGACA
CCCTGCGGCTACAGGGTGTATACGCTGTCCATTGTTCACCACGACACCCATGCACCAGGAGTTCC
CGCAACCACGCGGGCCCCCCGGCAGTCTAACCCGTTTCGGGGCAG
Found at i:36412 original size:17 final size:15
Alignment explanation
Indices: 36380--36417 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
36370 TGGTGGCTTG
36380 TCTGGTGGAGGTCTC
1 TCTGGTGGAGGTCTC
*
36395 TCTGGTGGAGGTGTC
1 TCTGGTGGAGGTCTC
36410 TCTGGTGG
1 TCTGGTGG
36418 CCTCGTGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.16, G:0.45, T:0.34
Consensus pattern (15 bp):
TCTGGTGGAGGTCTC
Left flanking sequence: Indices 35880 -- 36379
GCCCCTTATCCCCTGGCAGGGCTGTGCTGCGGCCCCCTTGCCGCCGGTTGTGTATCTAATTTTTG
TGCCTCGATAAAAATAACCGTGCCGTTGGTAGAGGGGATCATCGCAACTGCTGGCAGCACACGCA
GGGAGCGGGTGTTGTTGGGCGGGACTCTGCGTAACCCGCACTTTTTTATCACCCACAGGTATTTT
TTAGCCCCGACACCCACCGGTATTTGGGTTTCGCGGGGCCTGAAGGGATGGGCCTGCCTAGCGGG
CAGGTGGGGCGTAGGGCTACGGGCGTTCGTGGACGCAAAGAACCCCTGCACGGCGGTCTCGAGAC
CGATTAACACGTTTCCTGCAACCATGGTTATGGATCCCCGGGTCGGACGCCGGGCGCCATTGGCT
CGCCACAGCAATATAGGAGAACGGTTAGGAGGGCGTGGGATCGGCGTGGCAATCCCGGATGCCAC
GGCTGAGCCAGTGGCGCGGCGCTCGGGGCGGTTGCTGGTGGCTTG
Right flanking sequence: Indices 36418 -- 36917
CCTCGTGGTTTTTCCGACTAGACAATAGAGCAGCGAACAATCCCCAGATCGTGCAAAGCCTCCGA
CAAAGACTTGGCACCTCGACAAAGGACTAGTGGCTGTTGTGCAAAGGTTAACTTTGTGCCATGAT
GACAATTTATCCGGGTTGCGGTTGTTCGCTGGCAGGCGGAGTGGTCGAAGCCAGACAGGTAGCAA
TAGCGCAAGCAACGCTGTGAGTGAAGATGGGCGAGATAAGCTTTCGCTAGAGGGGCTTATTGTGG
CGTAGGGGAGAGGAAAAGGCGAGGATCTGGAGAGGAGGCGTAGATCTGGAGTGGGATAGTGGTAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGGGAGAGAGACCAGGTAGAGGGAGACT
AGGTAAAGAGAAAGACTAGGTAGACAGACTAGGTAGAGAGACTACGCAGAAAGAGACTACGTAGA
GAAAGAGGAGACTAGAGAGAGGCTAGAGAGAGACTAGAGAGAGAC
Found at i:36748 original size:2 final size:2
Alignment explanation
Indices: 36741--36790 Score: 82
Period size: 2 Copynumber: 24.5 Consensus size: 2
36731 GGATAGTGGT
*
36741 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG TAG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG
36784 AG AG AG A
1 AG AG AG A
36791 CCAGGTAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 43 0.96
3 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.50, T:0.02
Consensus pattern (2 bp):
AG
Left flanking sequence: Indices 36241 -- 36740
CCCGGGTCGGACGCCGGGCGCCATTGGCTCGCCACAGCAATATAGGAGAACGGTTAGGAGGGCGT
GGGATCGGCGTGGCAATCCCGGATGCCACGGCTGAGCCAGTGGCGCGGCGCTCGGGGCGGTTGCT
GGTGGCTTGTCTGGTGGAGGTCTCTCTGGTGGAGGTGTCTCTGGTGGCCTCGTGGTTTTTCCGAC
TAGACAATAGAGCAGCGAACAATCCCCAGATCGTGCAAAGCCTCCGACAAAGACTTGGCACCTCG
ACAAAGGACTAGTGGCTGTTGTGCAAAGGTTAACTTTGTGCCATGATGACAATTTATCCGGGTTG
CGGTTGTTCGCTGGCAGGCGGAGTGGTCGAAGCCAGACAGGTAGCAATAGCGCAAGCAACGCTGT
GAGTGAAGATGGGCGAGATAAGCTTTCGCTAGAGGGGCTTATTGTGGCGTAGGGGAGAGGAAAAG
GCGAGGATCTGGAGAGGAGGCGTAGATCTGGAGTGGGATAGTGGT
Right flanking sequence: Indices 36791 -- 37290
CCAGGTAGAGGGAGACTAGGTAAAGAGAAAGACTAGGTAGACAGACTAGGTAGAGAGACTACGCA
GAAAGAGACTACGTAGAGAAAGAGGAGACTAGAGAGAGGCTAGAGAGAGACTAGAGAGAGACTAG
GGAGAGACTAGAGAGAGACTAGGTAAAGACCAGGTGAAGAGAGTGCGAGAGACTAGGTAAAGACT
AGGTGGACAGACTACACAGACTAGGTAGACACTAGGACACTACGGGATTTCCTCTCATCGTTTGG
AGCCATGCCCAAGACTCTAGGGATAGTCCAGAGCAACGCTCCCACGTGGGCCCAGAGCCCGGAAC
CAGGCCTCACAAACGGGACACAAACCACCTCTCCACCACCAGCCGAGTAGCCACCAGGAATGGAT
AATGCTACCATTGTTCAACGACCATTCCATCTCTATTGTTCTACCGACCATCCCCTCTATTGTTC
ACCTCTCCATCCCATCGCTATTGTTCAACGACCATCCCATCGCTA
Found at i:36800 original size:13 final size:13
Alignment explanation
Indices: 36771--36945 Score: 94
Period size: 11 Copynumber: 14.1 Consensus size: 13
36761 AGAGAGAGAG
* *
36771 AGAGAGAGTAGGG
1 AGAGAGACTAGGT
*
36784 AGAGAGACCAGGT
1 AGAGAGACTAGGT
36797 AGAGGGAGACTAGGT
1 AGA--GAGACTAGGT
36812 AAAGAGAAAGACTAGGT
1 --AGAG--AGACTAGGT
*
36829 AGACAGACTAGGT
1 AGAGAGACTAGGT
* *
36842 AGAGAGACTACGC
1 AGAGAGACTAGGT
*
36855 AGAAAGAGACTACGT
1 AG--AGAGACTAGGT
36870 AGAGA-A--A-G-
1 AGAGAGACTAGGT
36878 AG-GAGACTA-G-
1 AGAGAGACTAGGT
*
36888 AGAGAGGCTA-G-
1 AGAGAGACTAGGT
36899 AGAGAGACTA-G-
1 AGAGAGACTAGGT
36910 AGAGAGACTAGG-
1 AGAGAGACTAGGT
36922 -GAGAGACTA-G-
1 AGAGAGACTAGGT
36932 AGAGAGACTAGGT
1 AGAGAGACTAGGT
36945 A
1 A
36946 AAGACCAGGT
Statistics
Matches: 135, Mismatches: 11, Indels: 32
0.76 0.06 0.18
Matches are distributed among these distances:
7 2 0.01
8 3 0.02
9 1 0.01
10 6 0.04
11 45 0.33
12 3 0.02
13 38 0.28
15 25 0.19
17 12 0.09
ACGTcount: A:0.42, C:0.10, G:0.38, T:0.10
Consensus pattern (13 bp):
AGAGAGACTAGGT
Left flanking sequence: Indices 36271 -- 36770
GCCACAGCAATATAGGAGAACGGTTAGGAGGGCGTGGGATCGGCGTGGCAATCCCGGATGCCACG
GCTGAGCCAGTGGCGCGGCGCTCGGGGCGGTTGCTGGTGGCTTGTCTGGTGGAGGTCTCTCTGGT
GGAGGTGTCTCTGGTGGCCTCGTGGTTTTTCCGACTAGACAATAGAGCAGCGAACAATCCCCAGA
TCGTGCAAAGCCTCCGACAAAGACTTGGCACCTCGACAAAGGACTAGTGGCTGTTGTGCAAAGGT
TAACTTTGTGCCATGATGACAATTTATCCGGGTTGCGGTTGTTCGCTGGCAGGCGGAGTGGTCGA
AGCCAGACAGGTAGCAATAGCGCAAGCAACGCTGTGAGTGAAGATGGGCGAGATAAGCTTTCGCT
AGAGGGGCTTATTGTGGCGTAGGGGAGAGGAAAAGGCGAGGATCTGGAGAGGAGGCGTAGATCTG
GAGTGGGATAGTGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
Right flanking sequence: Indices 36946 -- 37445
AAGACCAGGTGAAGAGAGTGCGAGAGACTAGGTAAAGACTAGGTGGACAGACTACACAGACTAGG
TAGACACTAGGACACTACGGGATTTCCTCTCATCGTTTGGAGCCATGCCCAAGACTCTAGGGATA
GTCCAGAGCAACGCTCCCACGTGGGCCCAGAGCCCGGAACCAGGCCTCACAAACGGGACACAAAC
CACCTCTCCACCACCAGCCGAGTAGCCACCAGGAATGGATAATGCTACCATTGTTCAACGACCAT
TCCATCTCTATTGTTCTACCGACCATCCCCTCTATTGTTCACCTCTCCATCCCATCGCTATTGTT
CAACGACCATCCCATCGCTATTGTTCCATGTCCCTTCGGACCCTGCGGTGGCCTGGTGCGCTATC
AATAGCCTACGACTTCGTAAGTGTCGTAACCGCCGTTGTTGGCGGCTTATCTCTCGGATCTCTGG
TGCGTCTATTCGAAACCGTTCAATGTGTCTATTTAACGTCGGGTA
Found at i:36900 original size:11 final size:11
Alignment explanation
Indices: 36876--36942 Score: 109
Period size: 11 Copynumber: 6.2 Consensus size: 11
36866 ACGTAGAGAA
36876 AGAG-GAGACT
1 AGAGAGAGACT
*
36886 AGAGAGAGGCT
1 AGAGAGAGACT
36897 AGAGAGAGACT
1 AGAGAGAGACT
36908 AGAGAGAGACT
1 AGAGAGAGACT
*
36919 AGGGAGAGACT
1 AGAGAGAGACT
36930 AGAGAGAGACT
1 AGAGAGAGACT
36941 AG
1 AG
36943 GTAAAGACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
10 4 0.08
11 48 0.92
ACGTcount: A:0.42, C:0.09, G:0.40, T:0.09
Consensus pattern (11 bp):
AGAGAGAGACT
Left flanking sequence: Indices 36376 -- 36875
CTTGTCTGGTGGAGGTCTCTCTGGTGGAGGTGTCTCTGGTGGCCTCGTGGTTTTTCCGACTAGAC
AATAGAGCAGCGAACAATCCCCAGATCGTGCAAAGCCTCCGACAAAGACTTGGCACCTCGACAAA
GGACTAGTGGCTGTTGTGCAAAGGTTAACTTTGTGCCATGATGACAATTTATCCGGGTTGCGGTT
GTTCGCTGGCAGGCGGAGTGGTCGAAGCCAGACAGGTAGCAATAGCGCAAGCAACGCTGTGAGTG
AAGATGGGCGAGATAAGCTTTCGCTAGAGGGGCTTATTGTGGCGTAGGGGAGAGGAAAAGGCGAG
GATCTGGAGAGGAGGCGTAGATCTGGAGTGGGATAGTGGTAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGTAGGGAGAGAGACCAGGTAGAGGGAGACTAGGTAAAGAGAAAGACTAGGTAG
ACAGACTAGGTAGAGAGACTACGCAGAAAGAGACTACGTAGAGAA
Right flanking sequence: Indices 36943 -- 37442
GTAAAGACCAGGTGAAGAGAGTGCGAGAGACTAGGTAAAGACTAGGTGGACAGACTACACAGACT
AGGTAGACACTAGGACACTACGGGATTTCCTCTCATCGTTTGGAGCCATGCCCAAGACTCTAGGG
ATAGTCCAGAGCAACGCTCCCACGTGGGCCCAGAGCCCGGAACCAGGCCTCACAAACGGGACACA
AACCACCTCTCCACCACCAGCCGAGTAGCCACCAGGAATGGATAATGCTACCATTGTTCAACGAC
CATTCCATCTCTATTGTTCTACCGACCATCCCCTCTATTGTTCACCTCTCCATCCCATCGCTATT
GTTCAACGACCATCCCATCGCTATTGTTCCATGTCCCTTCGGACCCTGCGGTGGCCTGGTGCGCT
ATCAATAGCCTACGACTTCGTAAGTGTCGTAACCGCCGTTGTTGGCGGCTTATCTCTCGGATCTC
TGGTGCGTCTATTCGAAACCGTTCAATGTGTCTATTTAACGTCGG
Found at i:37286 original size:25 final size:25
Alignment explanation
Indices: 37190--37296 Score: 119
Period size: 25 Copynumber: 4.3 Consensus size: 25
37180 TAATGCTACC
* *
37190 ATTGTTCAACGACCATTCCATCTCT
1 ATTGTTCAACGACCATCCCATCGCT
* *
37215 ATTGTTCTACCGACCATCCC--CTCT
1 ATTGTTC-AACGACCATCCCATCGCT
* **
37239 ATTGTTCACCTCTCCATCCCATCGCT
1 ATTGTTCAAC-GACCATCCCATCGCT
37265 ATTGTTCAACGACCATCCCATCGCT
1 ATTGTTCAACGACCATCCCATCGCT
37290 ATTGTTC
1 ATTGTTC
37297 CATGTCCCTT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
23 3 0.04
24 18 0.26
25 27 0.39
26 22 0.31
ACGTcount: A:0.20, C:0.36, G:0.09, T:0.35
Consensus pattern (25 bp):
ATTGTTCAACGACCATCCCATCGCT
Left flanking sequence: Indices 36690 -- 37189
GAAAAGGCGAGGATCTGGAGAGGAGGCGTAGATCTGGAGTGGGATAGTGGTAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGTAGGGAGAGAGACCAGGTAGAGGGAGACTAGGTAAAGAGAA
AGACTAGGTAGACAGACTAGGTAGAGAGACTACGCAGAAAGAGACTACGTAGAGAAAGAGGAGAC
TAGAGAGAGGCTAGAGAGAGACTAGAGAGAGACTAGGGAGAGACTAGAGAGAGACTAGGTAAAGA
CCAGGTGAAGAGAGTGCGAGAGACTAGGTAAAGACTAGGTGGACAGACTACACAGACTAGGTAGA
CACTAGGACACTACGGGATTTCCTCTCATCGTTTGGAGCCATGCCCAAGACTCTAGGGATAGTCC
AGAGCAACGCTCCCACGTGGGCCCAGAGCCCGGAACCAGGCCTCACAAACGGGACACAAACCACC
TCTCCACCACCAGCCGAGTAGCCACCAGGAATGGATAATGCTACC
Right flanking sequence: Indices 37297 -- 37796
CATGTCCCTTCGGACCCTGCGGTGGCCTGGTGCGCTATCAATAGCCTACGACTTCGTAAGTGTCG
TAACCGCCGTTGTTGGCGGCTTATCTCTCGGATCTCTGGTGCGTCTATTCGAAACCGTTCAATGT
GTCTATTTAACGTCGGGTACTGTTTTGGGGGAGCCAGTCCGCCGGGACCAGGACCTGTCCTGGAG
GCTGGTGGCTCCCATAGTAATAATACAAATGTAGGAACGAGAACTTCGGCCTCGGGAGGTTTGTG
GGAGGCGAAGCGGGAGGCTGGCGAACGAGAGTCATGGGTCATGGGGTCATGAGAGGTTAAGCCAC
AAGAGTAACGAGCCACAAGAGTCTGAGCCACGAGTCTGAGCCACGAAAGCCATAAGCCACGAGAG
TCTGAGCCACGAGAGTCACGAGAGCCACGAGAGCCACGAGAGCCACGGGGATTAGTAGTGCTTCT
CGTAGTGATTCTCGTAGTGCTTCTCGTAGTGATTTTCGGAGGGTT
Found at i:37651 original size:15 final size:15
Alignment explanation
Indices: 37616--37703 Score: 76
Period size: 15 Copynumber: 5.9 Consensus size: 15
37606 TGAGAGGTTA
37616 AGCCACAAGAGTAAC-G
1 AGCCACAAGAGT--CTG
37632 AGCCACAAGAGTCTG
1 AGCCACAAGAGTCTG
37647 AGCCAC--GAGTCTG
1 AGCCACAAGAGTCTG
* *
37660 AGCCACGAA-AGCCATA
1 AGCCAC-AAGAGTC-TG
*
37676 AGCCACGAGAGTCTG
1 AGCCACAAGAGTCTG
*
37691 AGCCACGAGAGTC
1 AGCCACAAGAGTC
37704 ACGAGAGCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
13 13 0.21
14 1 0.02
15 25 0.41
16 22 0.36
ACGTcount: A:0.34, C:0.28, G:0.27, T:0.10
Consensus pattern (15 bp):
AGCCACAAGAGTCTG
Left flanking sequence: Indices 37116 -- 37615
CAGGCCTCACAAACGGGACACAAACCACCTCTCCACCACCAGCCGAGTAGCCACCAGGAATGGAT
AATGCTACCATTGTTCAACGACCATTCCATCTCTATTGTTCTACCGACCATCCCCTCTATTGTTC
ACCTCTCCATCCCATCGCTATTGTTCAACGACCATCCCATCGCTATTGTTCCATGTCCCTTCGGA
CCCTGCGGTGGCCTGGTGCGCTATCAATAGCCTACGACTTCGTAAGTGTCGTAACCGCCGTTGTT
GGCGGCTTATCTCTCGGATCTCTGGTGCGTCTATTCGAAACCGTTCAATGTGTCTATTTAACGTC
GGGTACTGTTTTGGGGGAGCCAGTCCGCCGGGACCAGGACCTGTCCTGGAGGCTGGTGGCTCCCA
TAGTAATAATACAAATGTAGGAACGAGAACTTCGGCCTCGGGAGGTTTGTGGGAGGCGAAGCGGG
AGGCTGGCGAACGAGAGTCATGGGTCATGGGGTCATGAGAGGTTA
Right flanking sequence: Indices 37704 -- 38203
ACGAGAGCCACGAGAGCCACGAGAGCCACGGGGATTAGTAGTGCTTCTCGTAGTGATTCTCGTAG
TGCTTCTCGTAGTGATTTTCGGAGGGTTTTCGTAGTGGTTCTCGTAGCAGTTCTTGCAGTGTTTC
TCGTAGTGATTTTCGTAGTGTTTCTCATAGTAGTTCTCGTAGTGGATCTTGTAGTGGTTCTCGTA
GCGTTCTCGTAGTGGTGCTTGTAGAGTTTGTCTCTTTCTCGTCTCAGGCTTCCTCGTTTCGTGGT
TTGGGTCAGGAGGGAGCGGGGTGGTTGGCGGTGCCGCTGGCTGTGACTTCCGGAGTGTAACAAGC
AAATTAAGTCAAATAACCAAAACCAATCATTAGGGGGAGTCATACAGCCAGAAGAACCAGAAGAA
GTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAACGGGAGCCAGTAAGACAGTATAACC
AGAAAACCAGGAACCAACCACATCCAATTATAGCCAGTGAAACTC
Found at i:37658 original size:13 final size:13
Alignment explanation
Indices: 37640--37699 Score: 57
Period size: 13 Copynumber: 4.2 Consensus size: 13
37630 CGAGCCACAA
37640 GAGTCTGAGCCAC
1 GAGTCTGAGCCAC
37653 GAGTCTGAGCCAC
1 GAGTCTGAGCCAC
* *
37666 GAAAGCCATAAGCCAC
1 G--AGTC-TGAGCCAC
37682 GAGAGTCTGAGCCAC
1 --GAGTCTGAGCCAC
37697 GAG
1 GAG
37700 AGTCACGAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
13 17 0.45
15 10 0.26
16 10 0.26
18 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.30, T:0.12
Consensus pattern (13 bp):
GAGTCTGAGCCAC
Left flanking sequence: Indices 37140 -- 37639
CCACCTCTCCACCACCAGCCGAGTAGCCACCAGGAATGGATAATGCTACCATTGTTCAACGACCA
TTCCATCTCTATTGTTCTACCGACCATCCCCTCTATTGTTCACCTCTCCATCCCATCGCTATTGT
TCAACGACCATCCCATCGCTATTGTTCCATGTCCCTTCGGACCCTGCGGTGGCCTGGTGCGCTAT
CAATAGCCTACGACTTCGTAAGTGTCGTAACCGCCGTTGTTGGCGGCTTATCTCTCGGATCTCTG
GTGCGTCTATTCGAAACCGTTCAATGTGTCTATTTAACGTCGGGTACTGTTTTGGGGGAGCCAGT
CCGCCGGGACCAGGACCTGTCCTGGAGGCTGGTGGCTCCCATAGTAATAATACAAATGTAGGAAC
GAGAACTTCGGCCTCGGGAGGTTTGTGGGAGGCGAAGCGGGAGGCTGGCGAACGAGAGTCATGGG
TCATGGGGTCATGAGAGGTTAAGCCACAAGAGTAACGAGCCACAA
Right flanking sequence: Indices 37700 -- 38199
AGTCACGAGAGCCACGAGAGCCACGAGAGCCACGGGGATTAGTAGTGCTTCTCGTAGTGATTCTC
GTAGTGCTTCTCGTAGTGATTTTCGGAGGGTTTTCGTAGTGGTTCTCGTAGCAGTTCTTGCAGTG
TTTCTCGTAGTGATTTTCGTAGTGTTTCTCATAGTAGTTCTCGTAGTGGATCTTGTAGTGGTTCT
CGTAGCGTTCTCGTAGTGGTGCTTGTAGAGTTTGTCTCTTTCTCGTCTCAGGCTTCCTCGTTTCG
TGGTTTGGGTCAGGAGGGAGCGGGGTGGTTGGCGGTGCCGCTGGCTGTGACTTCCGGAGTGTAAC
AAGCAAATTAAGTCAAATAACCAAAACCAATCATTAGGGGGAGTCATACAGCCAGAAGAACCAGA
AGAAGTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAACGGGAGCCAGTAAGACAGTAT
AACCAGAAAACCAGGAACCAACCACATCCAATTATAGCCAGTGAA
Found at i:37708 original size:9 final size:9
Alignment explanation
Indices: 37690--37733 Score: 79
Period size: 9 Copynumber: 4.9 Consensus size: 9
37680 ACGAGAGTCT
37690 GAGCCACGA
1 GAGCCACGA
*
37699 GAGTCACGA
1 GAGCCACGA
37708 GAGCCACGA
1 GAGCCACGA
37717 GAGCCACGA
1 GAGCCACGA
37726 GAGCCACG
1 GAGCCACG
37734 GGGATTAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.32, C:0.32, G:0.34, T:0.02
Consensus pattern (9 bp):
GAGCCACGA
Left flanking sequence: Indices 37190 -- 37689
ATTGTTCAACGACCATTCCATCTCTATTGTTCTACCGACCATCCCCTCTATTGTTCACCTCTCCA
TCCCATCGCTATTGTTCAACGACCATCCCATCGCTATTGTTCCATGTCCCTTCGGACCCTGCGGT
GGCCTGGTGCGCTATCAATAGCCTACGACTTCGTAAGTGTCGTAACCGCCGTTGTTGGCGGCTTA
TCTCTCGGATCTCTGGTGCGTCTATTCGAAACCGTTCAATGTGTCTATTTAACGTCGGGTACTGT
TTTGGGGGAGCCAGTCCGCCGGGACCAGGACCTGTCCTGGAGGCTGGTGGCTCCCATAGTAATAA
TACAAATGTAGGAACGAGAACTTCGGCCTCGGGAGGTTTGTGGGAGGCGAAGCGGGAGGCTGGCG
AACGAGAGTCATGGGTCATGGGGTCATGAGAGGTTAAGCCACAAGAGTAACGAGCCACAAGAGTC
TGAGCCACGAGTCTGAGCCACGAAAGCCATAAGCCACGAGAGTCT
Right flanking sequence: Indices 37734 -- 38233
GGGATTAGTAGTGCTTCTCGTAGTGATTCTCGTAGTGCTTCTCGTAGTGATTTTCGGAGGGTTTT
CGTAGTGGTTCTCGTAGCAGTTCTTGCAGTGTTTCTCGTAGTGATTTTCGTAGTGTTTCTCATAG
TAGTTCTCGTAGTGGATCTTGTAGTGGTTCTCGTAGCGTTCTCGTAGTGGTGCTTGTAGAGTTTG
TCTCTTTCTCGTCTCAGGCTTCCTCGTTTCGTGGTTTGGGTCAGGAGGGAGCGGGGTGGTTGGCG
GTGCCGCTGGCTGTGACTTCCGGAGTGTAACAAGCAAATTAAGTCAAATAACCAAAACCAATCAT
TAGGGGGAGTCATACAGCCAGAAGAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCA
CTGAATTGAACGGGAGCCAGTAAGACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTA
TAGCCAGTGAAACTCAGTTAAACCAGTTAAAACGGTTAAACCAGT
Found at i:37758 original size:12 final size:12
Alignment explanation
Indices: 37741--37914 Score: 154
Period size: 12 Copynumber: 14.7 Consensus size: 12
37731 ACGGGGATTA
*
37741 GTAGTGCTTCTC
1 GTAGTGGTTCTC
*
37753 GTAGTGATTCTC
1 GTAGTGGTTCTC
*
37765 GTAGTGCTTCTC
1 GTAGTGGTTCTC
* *
37777 GTAGTGATTTTC
1 GTAGTGGTTCTC
* *
37789 GGAG-GGTTTTC
1 GTAGTGGTTCTC
37800 GTAGTGGTTCTC
1 GTAGTGGTTCTC
** *
37812 GTAGCAGTTCTT
1 GTAGTGGTTCTC
* *
37824 GCAGTGTTTCTC
1 GTAGTGGTTCTC
* *
37836 GTAGTGATTTTC
1 GTAGTGGTTCTC
*
37848 GTAGTGTTTCTC
1 GTAGTGGTTCTC
* *
37860 ATAGTAGTTCTC
1 GTAGTGGTTCTC
* *
37872 GTAGTGGATCTT
1 GTAGTGGTTCTC
37884 GTAGTGGTTCTC
1 GTAGTGGTTCTC
*
37896 GTAG-CGTTCTC
1 GTAGTGGTTCTC
37907 GTAGTGGT
1 GTAGTGGT
37915 GCTTGTAGAG
Statistics
Matches: 128, Mismatches: 32, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
11 19 0.15
12 109 0.85
ACGTcount: A:0.13, C:0.16, G:0.29, T:0.43
Consensus pattern (12 bp):
GTAGTGGTTCTC
Left flanking sequence: Indices 37241 -- 37740
TGTTCACCTCTCCATCCCATCGCTATTGTTCAACGACCATCCCATCGCTATTGTTCCATGTCCCT
TCGGACCCTGCGGTGGCCTGGTGCGCTATCAATAGCCTACGACTTCGTAAGTGTCGTAACCGCCG
TTGTTGGCGGCTTATCTCTCGGATCTCTGGTGCGTCTATTCGAAACCGTTCAATGTGTCTATTTA
ACGTCGGGTACTGTTTTGGGGGAGCCAGTCCGCCGGGACCAGGACCTGTCCTGGAGGCTGGTGGC
TCCCATAGTAATAATACAAATGTAGGAACGAGAACTTCGGCCTCGGGAGGTTTGTGGGAGGCGAA
GCGGGAGGCTGGCGAACGAGAGTCATGGGTCATGGGGTCATGAGAGGTTAAGCCACAAGAGTAAC
GAGCCACAAGAGTCTGAGCCACGAGTCTGAGCCACGAAAGCCATAAGCCACGAGAGTCTGAGCCA
CGAGAGTCACGAGAGCCACGAGAGCCACGAGAGCCACGGGGATTA
Right flanking sequence: Indices 37915 -- 38414
GCTTGTAGAGTTTGTCTCTTTCTCGTCTCAGGCTTCCTCGTTTCGTGGTTTGGGTCAGGAGGGAG
CGGGGTGGTTGGCGGTGCCGCTGGCTGTGACTTCCGGAGTGTAACAAGCAAATTAAGTCAAATAA
CCAAAACCAATCATTAGGGGGAGTCATACAGCCAGAAGAACCAGAAGAAGTAGGTCATAGATGTG
ATTAGTTGATGGCACTGAATTGAACGGGAGCCAGTAAGACAGTATAACCAGAAAACCAGGAACCA
ACCACATCCAATTATAGCCAGTGAAACTCAGTTAAACCAGTTAAAACGGTTAAACCAGTTAAACC
AGCTATACCAGTTGCGGCTCAAACCGTTGAAACCGGTGGAAACTAGCTGAAACTAGCCAAACCGG
TCTATAACAGCTCAAACCAGTAGAACCACTAGAACCAGTAGAAACCAGACAGTACTAGCGAAACC
AGTCCAAACCAGTTCAAACCAGTACAACCAGTTCAAACCAGCTCA
Found at i:38217 original size:9 final size:9
Alignment explanation
Indices: 38192--38252 Score: 68
Period size: 9 Copynumber: 6.7 Consensus size: 9
38182 CCAATTATAG
*
38192 CCAGTGAAA
1 CCAGTTAAA
38201 CTCAGTTAAA
1 C-CAGTTAAA
38211 CCAGTTAAA
1 CCAGTTAAA
* *
38220 ACGGTTAAA
1 CCAGTTAAA
38229 CCAGTTAAA
1 CCAGTTAAA
* *
38238 CCAGCTATA
1 CCAGTTAAA
38247 CCAGTT
1 CCAGTT
38253 GCGGCTCAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
9 35 0.81
10 8 0.19
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (9 bp):
CCAGTTAAA
Left flanking sequence: Indices 37692 -- 38191
GCCACGAGAGTCACGAGAGCCACGAGAGCCACGAGAGCCACGGGGATTAGTAGTGCTTCTCGTAG
TGATTCTCGTAGTGCTTCTCGTAGTGATTTTCGGAGGGTTTTCGTAGTGGTTCTCGTAGCAGTTC
TTGCAGTGTTTCTCGTAGTGATTTTCGTAGTGTTTCTCATAGTAGTTCTCGTAGTGGATCTTGTA
GTGGTTCTCGTAGCGTTCTCGTAGTGGTGCTTGTAGAGTTTGTCTCTTTCTCGTCTCAGGCTTCC
TCGTTTCGTGGTTTGGGTCAGGAGGGAGCGGGGTGGTTGGCGGTGCCGCTGGCTGTGACTTCCGG
AGTGTAACAAGCAAATTAAGTCAAATAACCAAAACCAATCATTAGGGGGAGTCATACAGCCAGAA
GAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAACGGGAGCCAGTAA
GACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTATAG
Right flanking sequence: Indices 38253 -- 38752
GCGGCTCAAACCGTTGAAACCGGTGGAAACTAGCTGAAACTAGCCAAACCGGTCTATAACAGCTC
AAACCAGTAGAACCACTAGAACCAGTAGAAACCAGACAGTACTAGCGAAACCAGTCCAAACCAGT
TCAAACCAGTACAACCAGTTCAAACCAGCTCAAACCAGCTCGAACCAGCTCGAACCAGCTCAACC
AGCTCACCAGCTCAACCGGCTCAGTATAACCGCTCAAAACCACCCATAATCACCCAACTGTGGAA
ATGACCCAAAAACCACGGAAAACCAGTCAATTGGACCTTTGAAAACCAGTCTAACTAGTCGAAAT
TGGCCAAACCAGTCAATTGGCCAAACAAGTCAAATTAGCCAAACCAGTCAAATTGGCCAAACCAG
TCAAATTAACCAAACCAGTCAAATTAACCAAATCAATCAAATTAACCAAACAGTCAAATTAACCA
AACAGTCAATTGACCAAACAGTCAAATTAACCAAACAGTCAATTG
Found at i:38337 original size:9 final size:9
Alignment explanation
Indices: 38319--38352 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
38309 TAACAGCTCA
38319 AACCAGTAG
1 AACCAGTAG
*
38328 AACCACTAG
1 AACCAGTAG
38337 AACCAGTAG
1 AACCAGTAG
38346 AAACCAG
1 -AACCAG
38353 ACAGTACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.47, C:0.26, G:0.18, T:0.09
Consensus pattern (9 bp):
AACCAGTAG
Left flanking sequence: Indices 37819 -- 38318
TTCTTGCAGTGTTTCTCGTAGTGATTTTCGTAGTGTTTCTCATAGTAGTTCTCGTAGTGGATCTT
GTAGTGGTTCTCGTAGCGTTCTCGTAGTGGTGCTTGTAGAGTTTGTCTCTTTCTCGTCTCAGGCT
TCCTCGTTTCGTGGTTTGGGTCAGGAGGGAGCGGGGTGGTTGGCGGTGCCGCTGGCTGTGACTTC
CGGAGTGTAACAAGCAAATTAAGTCAAATAACCAAAACCAATCATTAGGGGGAGTCATACAGCCA
GAAGAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAACGGGAGCCAG
TAAGACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTATAGCCAGTGAAACTCAGTTA
AACCAGTTAAAACGGTTAAACCAGTTAAACCAGCTATACCAGTTGCGGCTCAAACCGTTGAAACC
GGTGGAAACTAGCTGAAACTAGCCAAACCGGTCTATAACAGCTCA
Right flanking sequence: Indices 38353 -- 38852
ACAGTACTAGCGAAACCAGTCCAAACCAGTTCAAACCAGTACAACCAGTTCAAACCAGCTCAAAC
CAGCTCGAACCAGCTCGAACCAGCTCAACCAGCTCACCAGCTCAACCGGCTCAGTATAACCGCTC
AAAACCACCCATAATCACCCAACTGTGGAAATGACCCAAAAACCACGGAAAACCAGTCAATTGGA
CCTTTGAAAACCAGTCTAACTAGTCGAAATTGGCCAAACCAGTCAATTGGCCAAACAAGTCAAAT
TAGCCAAACCAGTCAAATTGGCCAAACCAGTCAAATTAACCAAACCAGTCAAATTAACCAAATCA
ATCAAATTAACCAAACAGTCAAATTAACCAAACAGTCAATTGACCAAACAGTCAAATTAACCAAA
CAGTCAATTGGCCAAACCATTCAATTGCTCAAAGACCTAGCCCTTGGCCTTACCAGTCAGAAATG
CTCATAACACCGCCTTGGCTTCCATCACTCCTCCTCGTCCTCGGT
Found at i:38449 original size:9 final size:10
Alignment explanation
Indices: 38365--38462 Score: 100
Period size: 10 Copynumber: 10.2 Consensus size: 10
38355 AGTACTAGCG
38365 AAACCAG-TCC
1 AAACCAGCT-C
*
38375 AAACCAGTTC
1 AAACCAGCTC
38385 AAACCAG-T-
1 AAACCAGCTC
*
38393 ACAACCAGTTC
1 A-AACCAGCTC
38404 AAACCAGCTC
1 AAACCAGCTC
38414 AAACCAGCTC
1 AAACCAGCTC
*
38424 GAACCAGCTC
1 AAACCAGCTC
*
38434 GAACCAGCTC
1 AAACCAGCTC
38444 -AACCAGCTC
1 AAACCAGCTC
38453 --ACCAGCTC
1 AAACCAGCTC
38461 AA
1 AA
38463 CCGGCTCAGT
Statistics
Matches: 80, Mismatches: 2, Indels: 12
0.85 0.02 0.13
Matches are distributed among these distances:
8 9 0.11
9 16 0.20
10 53 0.66
11 2 0.03
ACGTcount: A:0.38, C:0.38, G:0.12, T:0.12
Consensus pattern (10 bp):
AAACCAGCTC
Left flanking sequence: Indices 37865 -- 38364
AGTTCTCGTAGTGGATCTTGTAGTGGTTCTCGTAGCGTTCTCGTAGTGGTGCTTGTAGAGTTTGT
CTCTTTCTCGTCTCAGGCTTCCTCGTTTCGTGGTTTGGGTCAGGAGGGAGCGGGGTGGTTGGCGG
TGCCGCTGGCTGTGACTTCCGGAGTGTAACAAGCAAATTAAGTCAAATAACCAAAACCAATCATT
AGGGGGAGTCATACAGCCAGAAGAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCAC
TGAATTGAACGGGAGCCAGTAAGACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTAT
AGCCAGTGAAACTCAGTTAAACCAGTTAAAACGGTTAAACCAGTTAAACCAGCTATACCAGTTGC
GGCTCAAACCGTTGAAACCGGTGGAAACTAGCTGAAACTAGCCAAACCGGTCTATAACAGCTCAA
ACCAGTAGAACCACTAGAACCAGTAGAAACCAGACAGTACTAGCG
Right flanking sequence: Indices 38463 -- 38962
CCGGCTCAGTATAACCGCTCAAAACCACCCATAATCACCCAACTGTGGAAATGACCCAAAAACCA
CGGAAAACCAGTCAATTGGACCTTTGAAAACCAGTCTAACTAGTCGAAATTGGCCAAACCAGTCA
ATTGGCCAAACAAGTCAAATTAGCCAAACCAGTCAAATTGGCCAAACCAGTCAAATTAACCAAAC
CAGTCAAATTAACCAAATCAATCAAATTAACCAAACAGTCAAATTAACCAAACAGTCAATTGACC
AAACAGTCAAATTAACCAAACAGTCAATTGGCCAAACCATTCAATTGCTCAAAGACCTAGCCCTT
GGCCTTACCAGTCAGAAATGCTCATAACACCGCCTTGGCTTCCATCACTCCTCCTCGTCCTCGGT
CTCATCCTCGTCAATGTCCGTCACGTCGTCGTCGCCGCCCTTGCGCACCACGATCGGCGGAAGCC
GCCCCAGGTCCGTCAGTGGCTGCCGCAGGTGGCCCCGCGGCAGCA
Found at i:38618 original size:18 final size:17
Alignment explanation
Indices: 38569--38759 Score: 192
Period size: 18 Copynumber: 11.0 Consensus size: 17
38559 CAGTCTAACT
*
38569 AGTCGAAATTGGCCAAACC
1 AGTC-AAATTAGCCAAA-C
*
38588 AGTC-AATTGGCCAAAC
1 AGTCAAATTAGCCAAAC
38604 AAGTCAAATTAGCCAAACC
1 -AGTCAAATTAGCCAAA-C
*
38623 AGTCAAATTGGCCAAACC
1 AGTCAAATTAGCCAAA-C
*
38641 AGTCAAATTAACCAAACC
1 AGTCAAATTAGCCAAA-C
*
38659 AGTCAAATTAACCAAATC
1 AGTCAAATTAGCCAAA-C
* *
38677 AATCAAATTAACCAAAC
1 AGTCAAATTAGCCAAAC
*
38694 AGTCAAATTAACCAAAC
1 AGTCAAATTAGCCAAAC
38711 AGTC-AATT-GACCAAAC
1 AGTCAAATTAG-CCAAAC
*
38727 AGTCAAATTAACCAAAC
1 AGTCAAATTAGCCAAAC
*
38744 AGTC-AATTGGCCAAAC
1 AGTCAAATTAGCCAAAC
38760 CATTCAATTG
Statistics
Matches: 155, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
16 25 0.16
17 50 0.32
18 75 0.48
19 5 0.03
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.18
Consensus pattern (17 bp):
AGTCAAATTAGCCAAAC
Left flanking sequence: Indices 38069 -- 38568
CATACAGCCAGAAGAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAA
CGGGAGCCAGTAAGACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTATAGCCAGTGA
AACTCAGTTAAACCAGTTAAAACGGTTAAACCAGTTAAACCAGCTATACCAGTTGCGGCTCAAAC
CGTTGAAACCGGTGGAAACTAGCTGAAACTAGCCAAACCGGTCTATAACAGCTCAAACCAGTAGA
ACCACTAGAACCAGTAGAAACCAGACAGTACTAGCGAAACCAGTCCAAACCAGTTCAAACCAGTA
CAACCAGTTCAAACCAGCTCAAACCAGCTCGAACCAGCTCGAACCAGCTCAACCAGCTCACCAGC
TCAACCGGCTCAGTATAACCGCTCAAAACCACCCATAATCACCCAACTGTGGAAATGACCCAAAA
ACCACGGAAAACCAGTCAATTGGACCTTTGAAAACCAGTCTAACT
Right flanking sequence: Indices 38760 -- 39259
CATTCAATTGCTCAAAGACCTAGCCCTTGGCCTTACCAGTCAGAAATGCTCATAACACCGCCTTG
GCTTCCATCACTCCTCCTCGTCCTCGGTCTCATCCTCGTCAATGTCCGTCACGTCGTCGTCGCCG
CCCTTGCGCACCACGATCGGCGGAAGCCGCCCCAGGTCCGTCAGTGGCTGCCGCAGGTGGCCCCG
CGGCAGCAGCAACAGCATGAGCGAGTACACCGCGTCCTGTTCGGTGGTTTTCTCGTCGAGCGCCA
CCGTGAGCGGCGGCAAGCTGAGCCGCTGGCCGTTCTTGCTCGCGGAGGCCTGGCCCGCGCCCGCC
TCCAGCCGCGACTGCGCCATCGGCAGCACAAACTGCGGCGTGGGCTTGGGGAGGCCCTGGCCCAG
CCGCAACACCTCGTCCAACAGCGCGGTGCGCTTGTGCGAGAACGAGCGCCGCTTGCGCCGCTGGC
GGGTGATGGCCGCGAGCAACGCCTGGTGCGCCAGCGTGTCGTCGT
Found at i:38639 original size:36 final size:35
Alignment explanation
Indices: 38569--38766 Score: 219
Period size: 36 Copynumber: 5.7 Consensus size: 35
38559 CAGTCTAACT
* **
38569 AGTCGAAATTGGCCAAACCAGTC-AATTGGCCAAAC
1 AGTC-AAATTAGCCAAACCAGTCAAATTAACCAAAC
**
38604 AAGTCAAATTAGCCAAACCAGTCAAATTGGCCAAACC
1 -AGTCAAATTAGCCAAACCAGTCAAATTAACCAAA-C
*
38641 AGTCAAATTAACCAAACCAGTCAAATTAACCAAATC
1 AGTCAAATTAGCCAAACCAGTCAAATTAACCAAA-C
* *
38677 AATCAAATTAACCAAA-CAGTCAAATTAACCAAAC
1 AGTCAAATTAGCCAAACCAGTCAAATTAACCAAAC
38711 AGTC-AATT-GACCAAA-CAGTCAAATTAACCAAAC
1 AGTCAAATTAG-CCAAACCAGTCAAATTAACCAAAC
* *
38744 AGTC-AATTGGCCAAACCATTCAA
1 AGTCAAATTAGCCAAACCAGTCAA
38767 TTGCTCAAAG
Statistics
Matches: 148, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
33 40 0.27
34 11 0.07
35 34 0.23
36 62 0.42
37 1 0.01
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.18
Consensus pattern (35 bp):
AGTCAAATTAGCCAAACCAGTCAAATTAACCAAAC
Left flanking sequence: Indices 38069 -- 38568
CATACAGCCAGAAGAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAA
CGGGAGCCAGTAAGACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTATAGCCAGTGA
AACTCAGTTAAACCAGTTAAAACGGTTAAACCAGTTAAACCAGCTATACCAGTTGCGGCTCAAAC
CGTTGAAACCGGTGGAAACTAGCTGAAACTAGCCAAACCGGTCTATAACAGCTCAAACCAGTAGA
ACCACTAGAACCAGTAGAAACCAGACAGTACTAGCGAAACCAGTCCAAACCAGTTCAAACCAGTA
CAACCAGTTCAAACCAGCTCAAACCAGCTCGAACCAGCTCGAACCAGCTCAACCAGCTCACCAGC
TCAACCGGCTCAGTATAACCGCTCAAAACCACCCATAATCACCCAACTGTGGAAATGACCCAAAA
ACCACGGAAAACCAGTCAATTGGACCTTTGAAAACCAGTCTAACT
Right flanking sequence: Indices 38767 -- 39266
TTGCTCAAAGACCTAGCCCTTGGCCTTACCAGTCAGAAATGCTCATAACACCGCCTTGGCTTCCA
TCACTCCTCCTCGTCCTCGGTCTCATCCTCGTCAATGTCCGTCACGTCGTCGTCGCCGCCCTTGC
GCACCACGATCGGCGGAAGCCGCCCCAGGTCCGTCAGTGGCTGCCGCAGGTGGCCCCGCGGCAGC
AGCAACAGCATGAGCGAGTACACCGCGTCCTGTTCGGTGGTTTTCTCGTCGAGCGCCACCGTGAG
CGGCGGCAAGCTGAGCCGCTGGCCGTTCTTGCTCGCGGAGGCCTGGCCCGCGCCCGCCTCCAGCC
GCGACTGCGCCATCGGCAGCACAAACTGCGGCGTGGGCTTGGGGAGGCCCTGGCCCAGCCGCAAC
ACCTCGTCCAACAGCGCGGTGCGCTTGTGCGAGAACGAGCGCCGCTTGCGCCGCTGGCGGGTGAT
GGCCGCGAGCAACGCCTGGTGCGCCAGCGTGTCGTCGTCCGGCGT
Found at i:38769 original size:17 final size:18
Alignment explanation
Indices: 38581--38749 Score: 215
Period size: 18 Copynumber: 9.7 Consensus size: 18
38571 TCGAAATTGG
**
38581 CCAAACCAGTC-AATTGG
1 CCAAACCAGTCAAATTAA
* *
38598 CCAAACAAGTCAAATTAG
1 CCAAACCAGTCAAATTAA
**
38616 CCAAACCAGTCAAATTGG
1 CCAAACCAGTCAAATTAA
38634 CCAAACCAGTCAAATTAA
1 CCAAACCAGTCAAATTAA
38652 CCAAACCAGTCAAATTAA
1 CCAAACCAGTCAAATTAA
* *
38670 CCAAATCAATCAAATTAA
1 CCAAACCAGTCAAATTAA
38688 CCAAA-CAGTCAAATTAA
1 CCAAACCAGTCAAATTAA
*
38705 CCAAA-CAGTC-AATTGA
1 CCAAACCAGTCAAATTAA
38721 CCAAA-CAGTCAAATTAA
1 CCAAACCAGTCAAATTAA
38738 CCAAA-CAGTCAA
1 CCAAACCAGTCAA
38750 TTGGCCAAAC
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
16 15 0.11
17 48 0.35
18 76 0.55
ACGTcount: A:0.48, C:0.26, G:0.09, T:0.17
Consensus pattern (18 bp):
CCAAACCAGTCAAATTAA
Left flanking sequence: Indices 38081 -- 38580
AGAACCAGAAGAAGTAGGTCATAGATGTGATTAGTTGATGGCACTGAATTGAACGGGAGCCAGTA
AGACAGTATAACCAGAAAACCAGGAACCAACCACATCCAATTATAGCCAGTGAAACTCAGTTAAA
CCAGTTAAAACGGTTAAACCAGTTAAACCAGCTATACCAGTTGCGGCTCAAACCGTTGAAACCGG
TGGAAACTAGCTGAAACTAGCCAAACCGGTCTATAACAGCTCAAACCAGTAGAACCACTAGAACC
AGTAGAAACCAGACAGTACTAGCGAAACCAGTCCAAACCAGTTCAAACCAGTACAACCAGTTCAA
ACCAGCTCAAACCAGCTCGAACCAGCTCGAACCAGCTCAACCAGCTCACCAGCTCAACCGGCTCA
GTATAACCGCTCAAAACCACCCATAATCACCCAACTGTGGAAATGACCCAAAAACCACGGAAAAC
CAGTCAATTGGACCTTTGAAAACCAGTCTAACTAGTCGAAATTGG
Right flanking sequence: Indices 38750 -- 39249
TTGGCCAAACCATTCAATTGCTCAAAGACCTAGCCCTTGGCCTTACCAGTCAGAAATGCTCATAA
CACCGCCTTGGCTTCCATCACTCCTCCTCGTCCTCGGTCTCATCCTCGTCAATGTCCGTCACGTC
GTCGTCGCCGCCCTTGCGCACCACGATCGGCGGAAGCCGCCCCAGGTCCGTCAGTGGCTGCCGCA
GGTGGCCCCGCGGCAGCAGCAACAGCATGAGCGAGTACACCGCGTCCTGTTCGGTGGTTTTCTCG
TCGAGCGCCACCGTGAGCGGCGGCAAGCTGAGCCGCTGGCCGTTCTTGCTCGCGGAGGCCTGGCC
CGCGCCCGCCTCCAGCCGCGACTGCGCCATCGGCAGCACAAACTGCGGCGTGGGCTTGGGGAGGC
CCTGGCCCAGCCGCAACACCTCGTCCAACAGCGCGGTGCGCTTGTGCGAGAACGAGCGCCGCTTG
CGCCGCTGGCGGGTGATGGCCGCGAGCAACGCCTGGTGCGCCAGC
Found at i:39868 original size:26 final size:25
Alignment explanation
Indices: 39839--39905 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
39829 CAACAATTGG
*
39839 GGGA-GGAAGGAAGGGGGAGGGTAGAA
1 GGGATGGAA-GAAGGGGGA-AGTAGAA
*
39865 GGGATGGTAGAAGGGGGAAGTAGAA
1 GGGATGGAAGAAGGGGGAAGTAGAA
*
39890 GGGGATGGTAGAAGGG
1 -GGGATGGAAGAAGGG
39906 AAAGTTTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 6 0.16
26 28 0.76
27 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.58, T:0.09
Consensus pattern (25 bp):
GGGATGGAAGAAGGGGGAAGTAGAA
Left flanking sequence: Indices 39339 -- 39838
CTCGGCGAGGTTGACGTTGACCACGTTCAGCGGCTGCCAGCTCACGCGCTTCGCCTTGGTGGGCA
GCTCGCCGAACGGGGTGGTGCCGAGCGAGAAGTGCGCCGGCTCCGGCGGGATCTGGGTCATGGCC
AGCGACAACCGGTGCTTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAG
CTTGCGGGCCAGGCCGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGG
TCTGCAACGCGGCAAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGG
GAGAACGGAAGCGGCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAG
GCGGGGGGGTGTCTGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTT
TGAAACCAACGCCAGGCGCGCGGTCACGTGAGGAGCAACAATTGG
Right flanking sequence: Indices 39906 -- 40405
AAAGTTTAGGAGGGTGGTGTGATGGTGGTGTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTG
TTGGTGGTGGTAATGGTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGG
TATTGGTGGGTATTGGTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTACTGGTTAATGGTA
CTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACTGGATAC
AGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGTTTAGG
TTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGACGGTTG
TTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCGGA
GGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGG
Found at i:39906 original size:12 final size:13
Alignment explanation
Indices: 39852--39905 Score: 67
Period size: 12 Copynumber: 4.2 Consensus size: 13
39842 AGGAAGGAAG
*
39852 GGGGAGGGTAGAA
1 GGGGATGGTAGAA
39865 -GGGATGGTAGAA
1 GGGGATGGTAGAA
*
39877 GGGGGA-AGTAGAA
1 -GGGGATGGTAGAA
39890 GGGGATGGTAGAA
1 GGGGATGGTAGAA
39903 GGG
1 GGG
39906 AAAGTTTAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
12 16 0.46
13 15 0.43
14 4 0.11
ACGTcount: A:0.31, C:0.00, G:0.57, T:0.11
Consensus pattern (13 bp):
GGGGATGGTAGAA
Left flanking sequence: Indices 39352 -- 39851
ACGTTGACCACGTTCAGCGGCTGCCAGCTCACGCGCTTCGCCTTGGTGGGCAGCTCGCCGAACGG
GGTGGTGCCGAGCGAGAAGTGCGCCGGCTCCGGCGGGATCTGGGTCATGGCCAGCGACAACCGGT
GCTTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCGGGCCAGG
CCGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCAACGCGGC
AAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAGCG
GCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTGTC
TGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACGCC
AGGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAG
Right flanking sequence: Indices 39906 -- 40405
AAAGTTTAGGAGGGTGGTGTGATGGTGGTGTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTG
TTGGTGGTGGTAATGGTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGG
TATTGGTGGGTATTGGTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTACTGGTTAATGGTA
CTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACTGGATAC
AGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGTTTAGG
TTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGACGGTTG
TTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCGGA
GGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGG
Found at i:39934 original size:3 final size:3
Alignment explanation
Indices: 39918--39981 Score: 57
Period size: 3 Copynumber: 23.0 Consensus size: 3
39908 AGTTTAGGAG
* *
39918 GGT GGT -GT GAT GGT GGT -GT GGT -GT GAT GGT GGT -GT GG- GGT GGT
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
* *
39961 GGT GTT GGT GTT GGT GGT GGT
1 GGT GGT GGT GGT GGT GGT GGT
39982 AATGGTTAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
2 10 0.21
3 38 0.79
ACGTcount: A:0.03, C:0.00, G:0.59, T:0.38
Consensus pattern (3 bp):
GGT
Left flanking sequence: Indices 39418 -- 39917
GTGGTGCCGAGCGAGAAGTGCGCCGGCTCCGGCGGGATCTGGGTCATGGCCAGCGACAACCGGTG
CTTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCGGGCCAGGC
CGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCAACGCGGCA
AGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAGCGG
CGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTGTCT
GGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACGCCA
GGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAAGGGATGGT
AGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAG
Right flanking sequence: Indices 39982 -- 40481
AATGGTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGGTATTGGTGGGT
ATTGGTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTACTGGTTAATGGTACTAGTGGTTGT
ACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACTGGATACAGATACTGTTT
GGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGTTTAGGTTCGTCGTGTT
GTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGACGGTTGTTTTCGTGTTG
TTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCGGAGGTAACGGAGG
TTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGGGGGGTGTAATCGGGGC
TGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGT
Found at i:39940 original size:16 final size:15
Alignment explanation
Indices: 39919--39979 Score: 74
Period size: 16 Copynumber: 4.1 Consensus size: 15
39909 GTTTAGGAGG
39919 GTGGTGTGATGGTGGT
1 GTGGTGTG-TGGTGGT
39935 GTGGTGTGATGGTGGT
1 GTGGTGTG-TGGTGGT
39951 GTGG-G-GTGGTGGT
1 GTGGTGTGTGGTGGT
39964 GTTGGTGT-TGGTGGT
1 G-TGGTGTGTGGTGGT
39979 G
1 G
39980 GTAATGGTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.19
14 4 0.10
15 10 0.24
16 20 0.48
ACGTcount: A:0.03, C:0.00, G:0.59, T:0.38
Consensus pattern (15 bp):
GTGGTGTGTGGTGGT
Left flanking sequence: Indices 39419 -- 39918
TGGTGCCGAGCGAGAAGTGCGCCGGCTCCGGCGGGATCTGGGTCATGGCCAGCGACAACCGGTGC
TTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCGGGCCAGGCC
GAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCAACGCGGCAA
GGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAGCGGC
GCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTGTCTG
GGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACGCCAG
GCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAAGGGATGGTA
GAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAGG
Right flanking sequence: Indices 39980 -- 40479
GTAATGGTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGGTATTGGTGG
GTATTGGTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTACTGGTTAATGGTACTAGTGGTT
GTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACTGGATACAGATACTGT
TTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGTTTAGGTTCGTCGTG
TTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGACGGTTGTTTTCGTGT
TGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCGGAGGTAACGGA
GGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGGGGGGTGTAATCGGG
GCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGT
Found at i:39975 original size:12 final size:12
Alignment explanation
Indices: 39918--39981 Score: 57
Period size: 11 Copynumber: 5.8 Consensus size: 12
39908 AGTTTAGGAG
*
39918 GGTGGT-GTGAT
1 GGTGGTGGTGGT
39929 GGTGGT-GTGGT
1 GGTGGTGGTGGT
*
39940 -GTGATGGTGGT
1 GGTGGTGGTGGT
39951 -GTGG-GGTGGT
1 GGTGGTGGTGGT
* *
39961 GGTGTTGGTGTT
1 GGTGGTGGTGGT
39973 GGTGGTGGT
1 GGTGGTGGT
39982 AATGGTTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
10 10 0.23
11 21 0.48
12 13 0.30
ACGTcount: A:0.03, C:0.00, G:0.59, T:0.38
Consensus pattern (12 bp):
GGTGGTGGTGGT
Left flanking sequence: Indices 39418 -- 39917
GTGGTGCCGAGCGAGAAGTGCGCCGGCTCCGGCGGGATCTGGGTCATGGCCAGCGACAACCGGTG
CTTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCGGGCCAGGC
CGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCAACGCGGCA
AGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAGCGG
CGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTGTCT
GGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACGCCA
GGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAAGGGATGGT
AGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAG
Right flanking sequence: Indices 39982 -- 40481
AATGGTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGGTATTGGTGGGT
ATTGGTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTACTGGTTAATGGTACTAGTGGTTGT
ACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACTGGATACAGATACTGTTT
GGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGTTTAGGTTCGTCGTGTT
GTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGACGGTTGTTTTCGTGTTG
TTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCGGAGGTAACGGAGG
TTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGGGGGGTGTAATCGGGGC
TGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGT
Found at i:40012 original size:25 final size:25
Alignment explanation
Indices: 39975--40022 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
39965 TTGGTGTTGG
* *
39975 TGGTGGTAATGGTTAGTATTGGTGT
1 TGGTAGTAATGGTTAATATTGGTGT
*
40000 TGGTAGTACTGGTTAATATTGGT
1 TGGTAGTAATGGTTAATATTGGT
40023 TAGTATTGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.19, C:0.02, G:0.35, T:0.44
Consensus pattern (25 bp):
TGGTAGTAATGGTTAATATTGGTGT
Left flanking sequence: Indices 39475 -- 39974
AACCGGTGCTTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCG
GGCCAGGCCGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCA
ACGCGGCAAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAAC
GGAAGCGGCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGG
GGGTGTCTGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAAC
CAACGCCAGGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAA
GGGATGGTAGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAGGGTGGTGTGATG
GTGGTGTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTGTTGG
Right flanking sequence: Indices 40023 -- 40522
TAGTATTGGTGGGTATTGGTGGGTATTGGTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTA
CTGGTTAATGGTACTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTT
GGGTACTGGATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTT
GGTCGTGTTTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACA
GGCACGACGGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGAC
CGGAGAAATCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAAT
GGGCTAGGGGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCG
GTGTGGGCCGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGA
Found at i:40032 original size:20 final size:20
Alignment explanation
Indices: 40016--40092 Score: 109
Period size: 20 Copynumber: 3.9 Consensus size: 20
40006 TACTGGTTAA
*
40016 TATTGGTTAGTATTGGTGGG
1 TATTGGTTAGTACTGGTGGG
** *
40036 TATTGGTGGGTATTGGTGGG
1 TATTGGTTAGTACTGGTGGG
*
40056 TATTGGTTATTACTGGTGGG
1 TATTGGTTAGTACTGGTGGG
40076 TATTGGTTAGTACTGGT
1 TATTGGTTAGTACTGGT
40093 TAATGGTACT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.14, C:0.03, G:0.39, T:0.44
Consensus pattern (20 bp):
TATTGGTTAGTACTGGTGGG
Left flanking sequence: Indices 39516 -- 40015
GGCGTCGTCGACAAAGAGCTTGCGGGCCAGGCCGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGG
GCGGCTCGGGATGCGGGGTCTGCAACGCGGCAAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCA
AAGCGTTTTGTGCCGGGGGAGAACGGAAGCGGCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGG
GCGTGCGCGGCGTGGCAGGCGGGGGGGTGTCTGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGG
ACGGGCGCACCGTGGTTTTGAAACCAACGCCAGGCGCGCGGTCACGTGAGGAGCAACAATTGGGG
GAGGAAGGAAGGGGGAGGGTAGAAGGGATGGTAGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGG
AAAGTTTAGGAGGGTGGTGTGATGGTGGTGTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTG
TTGGTGGTGGTAATGGTTAGTATTGGTGTTGGTAGTACTGGTTAA
Right flanking sequence: Indices 40093 -- 40592
TAATGGTACTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTA
CTGGATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCG
TGTTTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCAC
GACGGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAG
AAATCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCT
AGGGGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTG
GGCCGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGCGTGGTGGCAC
GGAGGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAAGGTGGC
Found at i:40038 original size:10 final size:10
Alignment explanation
Indices: 40025--40082 Score: 80
Period size: 10 Copynumber: 5.8 Consensus size: 10
40015 ATATTGGTTA
40025 GTATTGGTGG
1 GTATTGGTGG
40035 GTATTGGTGG
1 GTATTGGTGG
40045 GTATTGGTGG
1 GTATTGGTGG
**
40055 GTATTGGTTA
1 GTATTGGTGG
* *
40065 TTACTGGTGG
1 GTATTGGTGG
40075 GTATTGGT
1 GTATTGGT
40083 TAGTACTGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 40 1.00
ACGTcount: A:0.12, C:0.02, G:0.43, T:0.43
Consensus pattern (10 bp):
GTATTGGTGG
Left flanking sequence: Indices 39525 -- 40024
GACAAAGAGCTTGCGGGCCAGGCCGAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGG
GATGCGGGGTCTGCAACGCGGCAAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTT
GTGCCGGGGGAGAACGGAAGCGGCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCG
GCGTGGCAGGCGGGGGGGTGTCTGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCA
CCGTGGTTTTGAAACCAACGCCAGGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGA
AGGGGGAGGGTAGAAGGGATGGTAGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAG
GAGGGTGGTGTGATGGTGGTGTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTGTTGGTGGTG
GTAATGGTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTA
Right flanking sequence: Indices 40083 -- 40582
TAGTACTGGTTAATGGTACTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTAC
TGTTTGGGTACTGGATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTAC
CTTTTGGTCGTGTTTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTG
AAACAGGCACGACGGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATA
GGGACCGGAGAAATCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTG
AAAATGGGCTAGGGGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTT
TCGCGGTGTGGGCCGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGC
GTGGTGGCACGGAGGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGG
Found at i:40092 original size:10 final size:10
Alignment explanation
Indices: 39984--40094 Score: 70
Period size: 10 Copynumber: 11.6 Consensus size: 10
39974 GTGGTGGTAA
39984 TGGTTAGTAT
1 TGGTTAGTAT
39994 TGG-T-G--T
1 TGGTTAGTAT
*
40000 TGG-TAGTAC
1 TGGTTAGTAT
*
40009 TGGTTAATAT
1 TGGTTAGTAT
40019 TGGTTAGTAT
1 TGGTTAGTAT
**
40029 TGGTGGGTAT
1 TGGTTAGTAT
**
40039 TGGTGGGTAT
1 TGGTTAGTAT
**
40049 TGGTGGGTAT
1 TGGTTAGTAT
* *
40059 TGGTTATTAC
1 TGGTTAGTAT
**
40069 TGGTGGGTAT
1 TGGTTAGTAT
*
40079 TGGTTAGTAC
1 TGGTTAGTAT
40089 TGGTTA
1 TGGTTA
40095 ATGGTACTAG
Statistics
Matches: 80, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
6 5 0.06
7 1 0.01
8 1 0.01
9 4 0.05
10 69 0.86
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.44
Consensus pattern (10 bp):
TGGTTAGTAT
Left flanking sequence: Indices 39484 -- 39983
TTCAACTTGGCCAGGATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCGGGCCAGGCC
GAGGTAGCTCTGCGGCGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCAACGCGGCAA
GGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAGCGGC
GCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTGTCTG
GGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACGCCAG
GCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAAGGGATGGTA
GAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAGGGTGGTGTGATGGTGGTGTGG
TGTGATGGTGGTGTGGGGTGGTGGTGTTGGTGTTGGTGGTGGTAA
Right flanking sequence: Indices 40095 -- 40594
ATGGTACTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACT
GGATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTG
TTTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGA
CGGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAA
ATCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAG
GGGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTGGG
CCGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGCGTGGTGGCACGG
AGGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAAGGTGGCAA
Found at i:40093 original size:30 final size:30
Alignment explanation
Indices: 39999--40094 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
39989 AGTATTGGTG
***
39999 TTGG-TAGTACTGGTTAATATTGGTTAGTA
1 TTGGTTAGTACTGGTGGGTATTGGTTAGTA
** * **
40028 TTGGTGGGTATTGGTGGGTATTGGTGGGTA
1 TTGGTTAGTACTGGTGGGTATTGGTTAGTA
*
40058 TTGGTTATTACTGGTGGGTATTGGTTAGTA
1 TTGGTTAGTACTGGTGGGTATTGGTTAGTA
*
40088 CTGGTTA
1 TTGGTTA
40095 ATGGTACTAG
Statistics
Matches: 51, Mismatches: 15, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
29 4 0.08
30 47 0.92
ACGTcount: A:0.17, C:0.03, G:0.36, T:0.44
Consensus pattern (30 bp):
TTGGTTAGTACTGGTGGGTATTGGTTAGTA
Left flanking sequence: Indices 39499 -- 39998
ATCTCCACCATGTCCTCGGCGTCGTCGACAAAGAGCTTGCGGGCCAGGCCGAGGTAGCTCTGCGG
CGTGCGCGGCTTCTTGGGCGGCTCGGGATGCGGGGTCTGCAACGCGGCAAGGGCGTCGTCGTCGT
CGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAGCGGCGCCATCCGCTGCGGC
AGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTGTCTGGGGGGGCGTCATGTC
GCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACGCCAGGCGCGCGGTCACGTG
AGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAAGGGATGGTAGAAGGGGGAAGTAGA
AGGGGATGGTAGAAGGGAAAGTTTAGGAGGGTGGTGTGATGGTGGTGTGGTGTGATGGTGGTGTG
GGGTGGTGGTGTTGGTGTTGGTGGTGGTAATGGTTAGTATTGGTG
Right flanking sequence: Indices 40095 -- 40594
ATGGTACTAGTGGTTGTACTGTTGGTGGTACTGTTTGGGTACTGTTTGGGTACTGTTTGGGTACT
GGATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTG
TTTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGA
CGGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAA
ATCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAG
GGGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTGGG
CCGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGCGTGGTGGCACGG
AGGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAAGGTGGCAA
Found at i:40120 original size:12 final size:12
Alignment explanation
Indices: 40096--40160 Score: 57
Period size: 11 Copynumber: 5.7 Consensus size: 12
40086 TACTGGTTAA
40096 TGGTACTAG-TGG
1 TGGTACT-GTTGG
*
40108 TTGTACTGTTGG
1 TGGTACTGTTGG
*
40120 TGGTACTGTTTG
1 TGGTACTGTTGG
*
40132 -GGTACTGTTTG
1 TGGTACTGTTGG
*
40143 -GGTACTGTTTG
1 TGGTACTGTTGG
40154 -GGTACTG
1 TGGTACTG
40161 GATACAGATA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
11 30 0.61
12 19 0.39
ACGTcount: A:0.11, C:0.09, G:0.37, T:0.43
Consensus pattern (12 bp):
TGGTACTGTTGG
Left flanking sequence: Indices 39596 -- 40095
GGGTCTGCAACGCGGCAAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCG
GGGGAGAACGGAAGCGGCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGG
CAGGCGGGGGGGTGTCTGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGG
TTTTGAAACCAACGCCAGGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGG
AGGGTAGAAGGGATGGTAGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAGGGT
GGTGTGATGGTGGTGTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTGTTGGTGGTGGTAATG
GTTAGTATTGGTGTTGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGGTATTGGTGGGTATTG
GTGGGTATTGGTTATTACTGGTGGGTATTGGTTAGTACTGGTTAA
Right flanking sequence: Indices 40161 -- 40660
GATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGT
TTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGAC
GGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAA
TCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGG
GGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTGGGC
CGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGCGTGGTGGCACGGA
GGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAAGGTGGCAAAGAGGTGACGTCAGAGGTATG
ATGGTGTTGGTGGTGGTGGTGGTTTAGCGGTGGTAAACGCGTGGG
Found at i:40137 original size:11 final size:11
Alignment explanation
Indices: 40110--40160 Score: 84
Period size: 11 Copynumber: 4.5 Consensus size: 11
40100 ACTAGTGGTT
*
40110 GTACTGTTGGTG
1 GTACTGTTTG-G
40122 GTACTGTTTGG
1 GTACTGTTTGG
40133 GTACTGTTTGG
1 GTACTGTTTGG
40144 GTACTGTTTGG
1 GTACTGTTTGG
40155 GTACTG
1 GTACTG
40161 GATACAGATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
11 29 0.76
12 9 0.24
ACGTcount: A:0.10, C:0.10, G:0.37, T:0.43
Consensus pattern (11 bp):
GTACTGTTTGG
Left flanking sequence: Indices 39610 -- 40109
GCAAGGGCGTCGTCGTCGTCGTCGTCGTGGTCGGCAAAGCGTTTTGTGCCGGGGGAGAACGGAAG
CGGCGCCATCCGCTGCGGCAGCACAAGCAGCAGCGGGCGTGCGCGGCGTGGCAGGCGGGGGGGTG
TCTGGGGGGGCGTCATGTCGCCAGGGTGTGGTGGGGACGGGCGCACCGTGGTTTTGAAACCAACG
CCAGGCGCGCGGTCACGTGAGGAGCAACAATTGGGGGAGGAAGGAAGGGGGAGGGTAGAAGGGAT
GGTAGAAGGGGGAAGTAGAAGGGGATGGTAGAAGGGAAAGTTTAGGAGGGTGGTGTGATGGTGGT
GTGGTGTGATGGTGGTGTGGGGTGGTGGTGTTGGTGTTGGTGGTGGTAATGGTTAGTATTGGTGT
TGGTAGTACTGGTTAATATTGGTTAGTATTGGTGGGTATTGGTGGGTATTGGTGGGTATTGGTTA
TTACTGGTGGGTATTGGTTAGTACTGGTTAATGGTACTAGTGGTT
Right flanking sequence: Indices 40161 -- 40660
GATACAGATACTGTTTGGGTGTGGTGTTGGCGCGTGGTGTTGGCGCGTCTACCTTTTGGTCGTGT
TTAGGTTCGTCGTGTTGTCTGTGCCGTGCGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGAC
GGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAA
TCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGG
GGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTGGGC
CGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGCGTGGTGGCACGGA
GGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAAGGTGGCAAAGAGGTGACGTCAGAGGTATG
ATGGTGTTGGTGGTGGTGGTGGTTTAGCGGTGGTAAACGCGTGGG
Found at i:40774 original size:15 final size:14
Alignment explanation
Indices: 40754--40788 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
40744 GGGCGCTAGT
40754 AAGGGGAAGGAGATG
1 AAGGGG-AGGAGATG
*
40769 AAGGGGTGGAGATG
1 AAGGGGAGGAGATG
40783 AAGGGG
1 AAGGGG
40789 TGGACAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.57, T:0.09
Consensus pattern (14 bp):
AAGGGGAGGAGATG
Left flanking sequence: Indices 40254 -- 40753
CGTGCCTTTTGCATCCCGTATGTGAAACAGGCACGACGGTTGTTTTCGTGTTGTTTCCTACCGTT
TGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCGGAGGTAACGGAGGTTTCGGGTAGGG
CGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGGGGGGTGTAATCGGGGCTGGGGAGACGCG
TGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTGGGCCGTGTTCTGGTGGGTGGTTGGGCGGGCT
AGGGATGGATTTTAGTAGACGCGCGTGGTGGCACGGAGGGGTGGCAAAGAGGAAGAGGAAAAAAG
GTGGCAAAGGTGGCAAAGAGGTGACGTCAGAGGTATGATGGTGTTGGTGGTGGTGGTGGTTTAGC
GGTGGTAAACGCGTGGGATGGTCGGGGTTCCGTTGTTGGGTCTGTCTGCGGGCTATTTTTGGCGC
AATCGGGTTTATTATGATATTTTTGTCTTAGATCTGGGCGCTAGT
Right flanking sequence: Indices 40789 -- 41288
TGGACAGGTGAAGGGGTAGAAGCAGGTAGAAGGAGGTAGAAGGAGGTAGAAGGAGGACGAACGCG
TGGGAGGAAAAAGTGGAAGGAAGGAAGGAAGGAACGGAAGGAGAAAAAGAAAAAGGAGACGAAGT
AGAGAGAGAAGACAAAGAAAGGGGTAAACCTTAATTAGCAAGCAGCGCTCCAGCAACGCGATAGC
CCAGCAATCAGCGCGACAGGCCAGCAAGCAGCGGACAATGGCGCCAGACGCGGGTGGTGAAACGA
TCGGCGGCTCGCATGGGTCCGCGTGGAGCCTTGGCACGGCTTATTGTGGGGAAGGACGGGTGAGG
TGGGCGTAGGAGTGTATACGTAGGAGTGTGGTATGAGGTGGGGACGTAGAAGTTTGGTGTTGGGA
GCTATGATACTGTGGAAGAAAGAGGTCTATTCTGTTGCCAGTGCTCCACTATTGACCTGTTGGTC
ACTACTGGTCTCAATCGATCGCTACTGGCCTCTATCGATCACTAG
Found at i:40805 original size:16 final size:14
Alignment explanation
Indices: 40762--40792 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
40752 GTAAGGGGAA
40762 GGAGATGAAGGGGT
1 GGAGATGAAGGGGT
40776 GGAGATGAAGGGGT
1 GGAGATGAAGGGGT
40790 GGA
1 GGA
40793 CAGGTGAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.58, T:0.13
Consensus pattern (14 bp):
GGAGATGAAGGGGT
Left flanking sequence: Indices 40262 -- 40761
TTGCATCCCGTATGTGAAACAGGCACGACGGTTGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAG
CGCGTTGGGCGGCATAGGGACCGGAGAAATCGGAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGC
GCGGTTGGAGGCGGTGAAAATGGGCTAGGGGGGTGTAATCGGGGCTGGGGAGACGCGTGGAGCGG
TCTTTTTGGGTGTTTTTCGCGGTGTGGGCCGTGTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGG
ATTTTAGTAGACGCGCGTGGTGGCACGGAGGGGTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAA
GGTGGCAAAGAGGTGACGTCAGAGGTATGATGGTGTTGGTGGTGGTGGTGGTTTAGCGGTGGTAA
ACGCGTGGGATGGTCGGGGTTCCGTTGTTGGGTCTGTCTGCGGGCTATTTTTGGCGCAATCGGGT
TTATTATGATATTTTTGTCTTAGATCTGGGCGCTAGTAAGGGGAA
Right flanking sequence: Indices 40793 -- 41292
CAGGTGAAGGGGTAGAAGCAGGTAGAAGGAGGTAGAAGGAGGTAGAAGGAGGACGAACGCGTGGG
AGGAAAAAGTGGAAGGAAGGAAGGAAGGAACGGAAGGAGAAAAAGAAAAAGGAGACGAAGTAGAG
AGAGAAGACAAAGAAAGGGGTAAACCTTAATTAGCAAGCAGCGCTCCAGCAACGCGATAGCCCAG
CAATCAGCGCGACAGGCCAGCAAGCAGCGGACAATGGCGCCAGACGCGGGTGGTGAAACGATCGG
CGGCTCGCATGGGTCCGCGTGGAGCCTTGGCACGGCTTATTGTGGGGAAGGACGGGTGAGGTGGG
CGTAGGAGTGTATACGTAGGAGTGTGGTATGAGGTGGGGACGTAGAAGTTTGGTGTTGGGAGCTA
TGATACTGTGGAAGAAAGAGGTCTATTCTGTTGCCAGTGCTCCACTATTGACCTGTTGGTCACTA
CTGGTCTCAATCGATCGCTACTGGCCTCTATCGATCACTAGTGGC
Found at i:40818 original size:10 final size:10
Alignment explanation
Indices: 40794--40844 Score: 79
Period size: 10 Copynumber: 5.3 Consensus size: 10
40784 AGGGGTGGAC
40794 AGGT-GAAGG
1 AGGTAGAAGG
*
40803 -GGTAGAAGC
1 AGGTAGAAGG
40812 AGGTAGAAGG
1 AGGTAGAAGG
40822 AGGTAGAAGG
1 AGGTAGAAGG
40832 AGGTAGAAGG
1 AGGTAGAAGG
40842 AGG
1 AGG
40845 ACGAACGCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
8 3 0.08
9 4 0.11
10 31 0.82
ACGTcount: A:0.37, C:0.02, G:0.51, T:0.10
Consensus pattern (10 bp):
AGGTAGAAGG
Left flanking sequence: Indices 40294 -- 40793
TGTTTTCGTGTTGTTTCCTACCGTTTGGAGAAGCGCGTTGGGCGGCATAGGGACCGGAGAAATCG
GAGGTAACGGAGGTTTCGGGTAGGGCGTCTGGCGCGGTTGGAGGCGGTGAAAATGGGCTAGGGGG
GTGTAATCGGGGCTGGGGAGACGCGTGGAGCGGTCTTTTTGGGTGTTTTTCGCGGTGTGGGCCGT
GTTCTGGTGGGTGGTTGGGCGGGCTAGGGATGGATTTTAGTAGACGCGCGTGGTGGCACGGAGGG
GTGGCAAAGAGGAAGAGGAAAAAAGGTGGCAAAGGTGGCAAAGAGGTGACGTCAGAGGTATGATG
GTGTTGGTGGTGGTGGTGGTTTAGCGGTGGTAAACGCGTGGGATGGTCGGGGTTCCGTTGTTGGG
TCTGTCTGCGGGCTATTTTTGGCGCAATCGGGTTTATTATGATATTTTTGTCTTAGATCTGGGCG
CTAGTAAGGGGAAGGAGATGAAGGGGTGGAGATGAAGGGGTGGAC
Right flanking sequence: Indices 40845 -- 41344
ACGAACGCGTGGGAGGAAAAAGTGGAAGGAAGGAAGGAAGGAACGGAAGGAGAAAAAGAAAAAGG
AGACGAAGTAGAGAGAGAAGACAAAGAAAGGGGTAAACCTTAATTAGCAAGCAGCGCTCCAGCAA
CGCGATAGCCCAGCAATCAGCGCGACAGGCCAGCAAGCAGCGGACAATGGCGCCAGACGCGGGTG
GTGAAACGATCGGCGGCTCGCATGGGTCCGCGTGGAGCCTTGGCACGGCTTATTGTGGGGAAGGA
CGGGTGAGGTGGGCGTAGGAGTGTATACGTAGGAGTGTGGTATGAGGTGGGGACGTAGAAGTTTG
GTGTTGGGAGCTATGATACTGTGGAAGAAAGAGGTCTATTCTGTTGCCAGTGCTCCACTATTGAC
CTGTTGGTCACTACTGGTCTCAATCGATCGCTACTGGCCTCTATCGATCACTAGTGGCCACTGTT
GGCCTATTGGCCTGTATGGGAGCGTAGGGCGGTGAAGTGTAGACA
Found at i:41270 original size:20 final size:20
Alignment explanation
Indices: 41245--41293 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
41235 CTGTTGGTCA
*
41245 CTACTGGTCTCAATCGATCG
1 CTACTGGCCTCAATCGATCG
* *
41265 CTACTGGCCTCTATCGATCA
1 CTACTGGCCTCAATCGATCG
*
41285 CTAGTGGCC
1 CTACTGGCC
41294 ACTGTTGGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.18, C:0.33, G:0.20, T:0.29
Consensus pattern (20 bp):
CTACTGGCCTCAATCGATCG
Left flanking sequence: Indices 40745 -- 41244
GGCGCTAGTAAGGGGAAGGAGATGAAGGGGTGGAGATGAAGGGGTGGACAGGTGAAGGGGTAGAA
GCAGGTAGAAGGAGGTAGAAGGAGGTAGAAGGAGGACGAACGCGTGGGAGGAAAAAGTGGAAGGA
AGGAAGGAAGGAACGGAAGGAGAAAAAGAAAAAGGAGACGAAGTAGAGAGAGAAGACAAAGAAAG
GGGTAAACCTTAATTAGCAAGCAGCGCTCCAGCAACGCGATAGCCCAGCAATCAGCGCGACAGGC
CAGCAAGCAGCGGACAATGGCGCCAGACGCGGGTGGTGAAACGATCGGCGGCTCGCATGGGTCCG
CGTGGAGCCTTGGCACGGCTTATTGTGGGGAAGGACGGGTGAGGTGGGCGTAGGAGTGTATACGT
AGGAGTGTGGTATGAGGTGGGGACGTAGAAGTTTGGTGTTGGGAGCTATGATACTGTGGAAGAAA
GAGGTCTATTCTGTTGCCAGTGCTCCACTATTGACCTGTTGGTCA
Right flanking sequence: Indices 41294 -- 41793
ACTGTTGGCCTATTGGCCTGTATGGGAGCGTAGGGCGGTGAAGTGTAGACAACCCGGGGGCACCA
CTGGCACGCCACGGTTAACCCGGCACGGGCATCACGGTACCACATGCTATTACTGCAAGCCCACC
GCCCTCCTGGGCAACTACTGCCCGAGTCCTAATGCGGGCTAATTTGACCCGGCTCTGGCCTATGT
CCTAATGCGGGCTAATGTGGACCCCTACGGCGTGGCCCAGTCTCTTGGCCACGGCTCTTGGCCAC
GGCTCTTGGCCACAACGTTGCCACGACTTGGCCATGTCCTCCACACGACACCCCTAGTCGCTTCT
CTCTACAATGCCAACAATAGAGTACAATGCACCGGCCACGACCCCTTGCTGGGCGCATGGACCCT
GGCGGCGCACCGATCGTGGCCTCGCTAACGCGGAAGCGCGCTGCCCTGCGTGTGGTCCTTTGTGC
TCCAGTGGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTAGAGTGGT
Found at i:41546 original size:13 final size:13
Alignment explanation
Indices: 41530--41566 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
41520 GTGGCCCAGT
41530 CTCTTGGCCACGG
1 CTCTTGGCCACGG
41543 CTCTTGGCCACGG
1 CTCTTGGCCACGG
41556 CTCTTGGCCAC
1 CTCTTGGCCAC
41567 AACGTTGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.08, C:0.41, G:0.27, T:0.24
Consensus pattern (13 bp):
CTCTTGGCCACGG
Left flanking sequence: Indices 41030 -- 41529
GACGCGGGTGGTGAAACGATCGGCGGCTCGCATGGGTCCGCGTGGAGCCTTGGCACGGCTTATTG
TGGGGAAGGACGGGTGAGGTGGGCGTAGGAGTGTATACGTAGGAGTGTGGTATGAGGTGGGGACG
TAGAAGTTTGGTGTTGGGAGCTATGATACTGTGGAAGAAAGAGGTCTATTCTGTTGCCAGTGCTC
CACTATTGACCTGTTGGTCACTACTGGTCTCAATCGATCGCTACTGGCCTCTATCGATCACTAGT
GGCCACTGTTGGCCTATTGGCCTGTATGGGAGCGTAGGGCGGTGAAGTGTAGACAACCCGGGGGC
ACCACTGGCACGCCACGGTTAACCCGGCACGGGCATCACGGTACCACATGCTATTACTGCAAGCC
CACCGCCCTCCTGGGCAACTACTGCCCGAGTCCTAATGCGGGCTAATTTGACCCGGCTCTGGCCT
ATGTCCTAATGCGGGCTAATGTGGACCCCTACGGCGTGGCCCAGT
Right flanking sequence: Indices 41567 -- 42066
AACGTTGCCACGACTTGGCCATGTCCTCCACACGACACCCCTAGTCGCTTCTCTCTACAATGCCA
ACAATAGAGTACAATGCACCGGCCACGACCCCTTGCTGGGCGCATGGACCCTGGCGGCGCACCGA
TCGTGGCCTCGCTAACGCGGAAGCGCGCTGCCCTGCGTGTGGTCCTTTGTGCTCCAGTGGTGGTG
TTAGAGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTAAGTGGTGTTAAGTGGTGT
TAAGTGGTGTTAAGTGGTGTTACAGGAAAGAGTTGAAAACAGTAGAAACAGAAAAAAAGTAGTGA
GACAACGCGTTTGATTGACTTCGTTGTCTAACCTTAATCTCATCCCGCGTTTGTTTGTTGTCAAA
CACGGTTGTTGTGGTTGGCGATGGTTCGGGTAGCAACTGGCGACCGGTCGAATCAGGAAAAAAGG
GTGTTTCAGAACGGAATCTGGGGTACCACGGCGGAGATAAGGGAT
Found at i:41814 original size:10 final size:11
Alignment explanation
Indices: 41756--41848 Score: 158
Period size: 11 Copynumber: 8.8 Consensus size: 11
41746 TGCTCCAGTG
41756 GTGGTGTTAGA
1 GTGGTGTTAGA
41767 GTGGTGTTAGA
1 GTGGTGTTAGA
41778 GTGGTGTTAGA
1 GTGGTGTTAGA
41789 GTGGTGTTAGA
1 GTGGTGTTAGA
41800 GTGGTGTTA-A
1 GTGGTGTTAGA
41810 GTGGTGTTA-A
1 GTGGTGTTAGA
41820 GTGGTGTTA-A
1 GTGGTGTTAGA
41830 GTGGTGTTA-A
1 GTGGTGTTAGA
41840 GTGGTGTTA
1 GTGGTGTTA
41849 CAGGAAAGAG
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
10 40 0.49
11 42 0.51
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (11 bp):
GTGGTGTTAGA
Left flanking sequence: Indices 41256 -- 41755
AATCGATCGCTACTGGCCTCTATCGATCACTAGTGGCCACTGTTGGCCTATTGGCCTGTATGGGA
GCGTAGGGCGGTGAAGTGTAGACAACCCGGGGGCACCACTGGCACGCCACGGTTAACCCGGCACG
GGCATCACGGTACCACATGCTATTACTGCAAGCCCACCGCCCTCCTGGGCAACTACTGCCCGAGT
CCTAATGCGGGCTAATTTGACCCGGCTCTGGCCTATGTCCTAATGCGGGCTAATGTGGACCCCTA
CGGCGTGGCCCAGTCTCTTGGCCACGGCTCTTGGCCACGGCTCTTGGCCACAACGTTGCCACGAC
TTGGCCATGTCCTCCACACGACACCCCTAGTCGCTTCTCTCTACAATGCCAACAATAGAGTACAA
TGCACCGGCCACGACCCCTTGCTGGGCGCATGGACCCTGGCGGCGCACCGATCGTGGCCTCGCTA
ACGCGGAAGCGCGCTGCCCTGCGTGTGGTCCTTTGTGCTCCAGTG
Right flanking sequence: Indices 41849 -- 42348
CAGGAAAGAGTTGAAAACAGTAGAAACAGAAAAAAAGTAGTGAGACAACGCGTTTGATTGACTTC
GTTGTCTAACCTTAATCTCATCCCGCGTTTGTTTGTTGTCAAACACGGTTGTTGTGGTTGGCGAT
GGTTCGGGTAGCAACTGGCGACCGGTCGAATCAGGAAAAAAGGGTGTTTCAGAACGGAATCTGGG
GTACCACGGCGGAGATAAGGGATGAAGGGATGAAGGGTGGCAAAGGGGTGGCAAAGGGGTAGGAA
AAGGCTAAATAGGGTTGGGGATGGGACACGAAGCCAACGGTTGGTGGATAGCGATGGAACTCGCT
ACGGGAGAACGCTTCAAACCCGATGAAACTGTAGGGGATCGCTCATGTAGGGGATCGCTCATGTA
GAGGACATGTAGGAGGACATGTAGGAGACGGTCATGTAGGAGGGTCGATTATGTAGGAGACGGAT
CGTAGCAGGGCCAATCACGTAGTACGACGGGCACGCAAAGGAGAC
Found at i:42094 original size:11 final size:11
Alignment explanation
Indices: 42078--42103 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
42068 AAGGGATGAA
42078 GGGTGGCAAAG
1 GGGTGGCAAAG
42089 GGGTGGCAAAG
1 GGGTGGCAAAG
42100 GGGT
1 GGGT
42104 AGGAAAAGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.08, G:0.58, T:0.12
Consensus pattern (11 bp):
GGGTGGCAAAG
Left flanking sequence: Indices 41578 -- 42077
GACTTGGCCATGTCCTCCACACGACACCCCTAGTCGCTTCTCTCTACAATGCCAACAATAGAGTA
CAATGCACCGGCCACGACCCCTTGCTGGGCGCATGGACCCTGGCGGCGCACCGATCGTGGCCTCG
CTAACGCGGAAGCGCGCTGCCCTGCGTGTGGTCCTTTGTGCTCCAGTGGTGGTGTTAGAGTGGTG
TTAGAGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTAAGTGGTGTTAAGTGGTGTTAAGTGGTGTT
AAGTGGTGTTACAGGAAAGAGTTGAAAACAGTAGAAACAGAAAAAAAGTAGTGAGACAACGCGTT
TGATTGACTTCGTTGTCTAACCTTAATCTCATCCCGCGTTTGTTTGTTGTCAAACACGGTTGTTG
TGGTTGGCGATGGTTCGGGTAGCAACTGGCGACCGGTCGAATCAGGAAAAAAGGGTGTTTCAGAA
CGGAATCTGGGGTACCACGGCGGAGATAAGGGATGAAGGGATGAA
Right flanking sequence: Indices 42104 -- 42603
AGGAAAAGGCTAAATAGGGTTGGGGATGGGACACGAAGCCAACGGTTGGTGGATAGCGATGGAAC
TCGCTACGGGAGAACGCTTCAAACCCGATGAAACTGTAGGGGATCGCTCATGTAGGGGATCGCTC
ATGTAGAGGACATGTAGGAGGACATGTAGGAGACGGTCATGTAGGAGGGTCGATTATGTAGGAGA
CGGATCGTAGCAGGGCCAATCACGTAGTACGACGGGCACGCAAAGGAGACGTAATGGCACATGGC
CATCGTACGACTGGCATTGGACCGAGGTCAACGCCAGGCTGGCACCAGATTGGCACAAGGGTGGC
ACCAGGCTGGCAACAAGCTGATACCCAGCCATTGACCCGATGACCAACAGTTCAACCTCCTTTCG
TCCACATCAGATGCAATTGATAACCCTGAAACGACCCCTGACTTAACCCAACACGTATCCCAACC
ACTCACCAGGTCTCCCAACCACTGTATCTTAACCACTTACCAGGT
Found at i:42224 original size:16 final size:16
Alignment explanation
Indices: 42203--42239 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
42193 CCGATGAAAC
42203 TGTAGGGGATCGCTCA
1 TGTAGGGGATCGCTCA
42219 TGTAGGGGATCGCTCA
1 TGTAGGGGATCGCTCA
42235 TGTAG
1 TGTAG
42240 AGGACATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.27
Consensus pattern (16 bp):
TGTAGGGGATCGCTCA
Left flanking sequence: Indices 41703 -- 42202
CCTCGCTAACGCGGAAGCGCGCTGCCCTGCGTGTGGTCCTTTGTGCTCCAGTGGTGGTGTTAGAG
TGGTGTTAGAGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTAAGTGGTGTTAAGTGGTGTTAAGTG
GTGTTAAGTGGTGTTACAGGAAAGAGTTGAAAACAGTAGAAACAGAAAAAAAGTAGTGAGACAAC
GCGTTTGATTGACTTCGTTGTCTAACCTTAATCTCATCCCGCGTTTGTTTGTTGTCAAACACGGT
TGTTGTGGTTGGCGATGGTTCGGGTAGCAACTGGCGACCGGTCGAATCAGGAAAAAAGGGTGTTT
CAGAACGGAATCTGGGGTACCACGGCGGAGATAAGGGATGAAGGGATGAAGGGTGGCAAAGGGGT
GGCAAAGGGGTAGGAAAAGGCTAAATAGGGTTGGGGATGGGACACGAAGCCAACGGTTGGTGGAT
AGCGATGGAACTCGCTACGGGAGAACGCTTCAAACCCGATGAAAC
Right flanking sequence: Indices 42240 -- 42739
AGGACATGTAGGAGGACATGTAGGAGACGGTCATGTAGGAGGGTCGATTATGTAGGAGACGGATC
GTAGCAGGGCCAATCACGTAGTACGACGGGCACGCAAAGGAGACGTAATGGCACATGGCCATCGT
ACGACTGGCATTGGACCGAGGTCAACGCCAGGCTGGCACCAGATTGGCACAAGGGTGGCACCAGG
CTGGCAACAAGCTGATACCCAGCCATTGACCCGATGACCAACAGTTCAACCTCCTTTCGTCCACA
TCAGATGCAATTGATAACCCTGAAACGACCCCTGACTTAACCCAACACGTATCCCAACCACTCAC
CAGGTCTCCCAACCACTGTATCTTAACCACTTACCAGGTATCCAAACCACCCTCAACGTAACTAA
ACACTCTCAACGTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCACGTATCCAAACCACT
CTCTACCACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGC
Found at i:42256 original size:12 final size:12
Alignment explanation
Indices: 42233--42265 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
42223 GGGGATCGCT
42233 CATGTA-GAGGA
1 CATGTAGGAGGA
42244 CATGTAGGAGGA
1 CATGTAGGAGGA
42256 CATGTAGGAG
1 CATGTAGGAG
42266 ACGGTCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.33, C:0.09, G:0.39, T:0.18
Consensus pattern (12 bp):
CATGTAGGAGGA
Left flanking sequence: Indices 41733 -- 42232
GTGTGGTCCTTTGTGCTCCAGTGGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTAGAGTGGTGTTA
GAGTGGTGTTAAGTGGTGTTAAGTGGTGTTAAGTGGTGTTAAGTGGTGTTACAGGAAAGAGTTGA
AAACAGTAGAAACAGAAAAAAAGTAGTGAGACAACGCGTTTGATTGACTTCGTTGTCTAACCTTA
ATCTCATCCCGCGTTTGTTTGTTGTCAAACACGGTTGTTGTGGTTGGCGATGGTTCGGGTAGCAA
CTGGCGACCGGTCGAATCAGGAAAAAAGGGTGTTTCAGAACGGAATCTGGGGTACCACGGCGGAG
ATAAGGGATGAAGGGATGAAGGGTGGCAAAGGGGTGGCAAAGGGGTAGGAAAAGGCTAAATAGGG
TTGGGGATGGGACACGAAGCCAACGGTTGGTGGATAGCGATGGAACTCGCTACGGGAGAACGCTT
CAAACCCGATGAAACTGTAGGGGATCGCTCATGTAGGGGATCGCT
Right flanking sequence: Indices 42266 -- 42765
ACGGTCATGTAGGAGGGTCGATTATGTAGGAGACGGATCGTAGCAGGGCCAATCACGTAGTACGA
CGGGCACGCAAAGGAGACGTAATGGCACATGGCCATCGTACGACTGGCATTGGACCGAGGTCAAC
GCCAGGCTGGCACCAGATTGGCACAAGGGTGGCACCAGGCTGGCAACAAGCTGATACCCAGCCAT
TGACCCGATGACCAACAGTTCAACCTCCTTTCGTCCACATCAGATGCAATTGATAACCCTGAAAC
GACCCCTGACTTAACCCAACACGTATCCCAACCACTCACCAGGTCTCCCAACCACTGTATCTTAA
CCACTTACCAGGTATCCAAACCACCCTCAACGTAACTAAACACTCTCAACGTATCCCAATCTCCC
ACCACGTATCCCAATCTCTCACCACGTATCCAAACCACTCTCTACCACTTTCACCACTCCAACCG
CTTCCAACTCTCCAACCGCTTAGCCATGGCCAATTGGCCAATTGT
Found at i:42439 original size:11 final size:11
Alignment explanation
Indices: 42397--42440 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
42387 GAGGTCAACG
42397 CCAGGCTGGCA
1 CCAGGCTGGCA
**
42408 CCAGATTGGCA
1 CCAGGCTGGCA
* *
42419 CAAGGGTGGCA
1 CCAGGCTGGCA
42430 CCAGGCTGGCA
1 CCAGGCTGGCA
42441 ACAAGCTGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.23, C:0.30, G:0.36, T:0.11
Consensus pattern (11 bp):
CCAGGCTGGCA
Left flanking sequence: Indices 41897 -- 42396
CGCGTTTGATTGACTTCGTTGTCTAACCTTAATCTCATCCCGCGTTTGTTTGTTGTCAAACACGG
TTGTTGTGGTTGGCGATGGTTCGGGTAGCAACTGGCGACCGGTCGAATCAGGAAAAAAGGGTGTT
TCAGAACGGAATCTGGGGTACCACGGCGGAGATAAGGGATGAAGGGATGAAGGGTGGCAAAGGGG
TGGCAAAGGGGTAGGAAAAGGCTAAATAGGGTTGGGGATGGGACACGAAGCCAACGGTTGGTGGA
TAGCGATGGAACTCGCTACGGGAGAACGCTTCAAACCCGATGAAACTGTAGGGGATCGCTCATGT
AGGGGATCGCTCATGTAGAGGACATGTAGGAGGACATGTAGGAGACGGTCATGTAGGAGGGTCGA
TTATGTAGGAGACGGATCGTAGCAGGGCCAATCACGTAGTACGACGGGCACGCAAAGGAGACGTA
ATGGCACATGGCCATCGTACGACTGGCATTGGACCGAGGTCAACG
Right flanking sequence: Indices 42441 -- 42940
ACAAGCTGATACCCAGCCATTGACCCGATGACCAACAGTTCAACCTCCTTTCGTCCACATCAGAT
GCAATTGATAACCCTGAAACGACCCCTGACTTAACCCAACACGTATCCCAACCACTCACCAGGTC
TCCCAACCACTGTATCTTAACCACTTACCAGGTATCCAAACCACCCTCAACGTAACTAAACACTC
TCAACGTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCACGTATCCAAACCACTCTCTAC
CACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGCCATGGCCAATTGGCCAATTGT
TTCCCAATTCCACACGAACCCGGCGCCGAGCATGCTCAACGAGCCCCCAGCATGCTCAACGAGCC
CCAAGCATGGAGCCCAAGCCTCCATGCGCTATGACGGACGATGGCTTAGGCGATCGAATGGTTTG
GGTGCTTACAAAATACTCACCTTACCCCGGAATCCCTACGTGGCG
Found at i:42439 original size:22 final size:23
Alignment explanation
Indices: 42403--42445 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
42393 AACGCCAGGC
*
42403 TGGCACCAGATTGGC-ACAAGGG
1 TGGCACCAGACTGGCAACAAGGG
*
42425 TGGCACCAGGCTGGCAACAAG
1 TGGCACCAGACTGGCAACAAG
42446 CTGATACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.28, C:0.26, G:0.35, T:0.12
Consensus pattern (23 bp):
TGGCACCAGACTGGCAACAAGGG
Left flanking sequence: Indices 41903 -- 42402
TGATTGACTTCGTTGTCTAACCTTAATCTCATCCCGCGTTTGTTTGTTGTCAAACACGGTTGTTG
TGGTTGGCGATGGTTCGGGTAGCAACTGGCGACCGGTCGAATCAGGAAAAAAGGGTGTTTCAGAA
CGGAATCTGGGGTACCACGGCGGAGATAAGGGATGAAGGGATGAAGGGTGGCAAAGGGGTGGCAA
AGGGGTAGGAAAAGGCTAAATAGGGTTGGGGATGGGACACGAAGCCAACGGTTGGTGGATAGCGA
TGGAACTCGCTACGGGAGAACGCTTCAAACCCGATGAAACTGTAGGGGATCGCTCATGTAGGGGA
TCGCTCATGTAGAGGACATGTAGGAGGACATGTAGGAGACGGTCATGTAGGAGGGTCGATTATGT
AGGAGACGGATCGTAGCAGGGCCAATCACGTAGTACGACGGGCACGCAAAGGAGACGTAATGGCA
CATGGCCATCGTACGACTGGCATTGGACCGAGGTCAACGCCAGGC
Right flanking sequence: Indices 42446 -- 42945
CTGATACCCAGCCATTGACCCGATGACCAACAGTTCAACCTCCTTTCGTCCACATCAGATGCAAT
TGATAACCCTGAAACGACCCCTGACTTAACCCAACACGTATCCCAACCACTCACCAGGTCTCCCA
ACCACTGTATCTTAACCACTTACCAGGTATCCAAACCACCCTCAACGTAACTAAACACTCTCAAC
GTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCACGTATCCAAACCACTCTCTACCACTT
TCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGCCATGGCCAATTGGCCAATTGTTTCCC
AATTCCACACGAACCCGGCGCCGAGCATGCTCAACGAGCCCCCAGCATGCTCAACGAGCCCCAAG
CATGGAGCCCAAGCCTCCATGCGCTATGACGGACGATGGCTTAGGCGATCGAATGGTTTGGGTGC
TTACAAAATACTCACCTTACCCCGGAATCCCTACGTGGCGCTAAC
Found at i:42664 original size:20 final size:20
Alignment explanation
Indices: 42639--42686 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
42629 AACACTCTCA
42639 ACGTATCCCAATCTCCCACC
1 ACGTATCCCAATCTCCCACC
*
42659 ACGTATCCCAATCTCTCACC
1 ACGTATCCCAATCTCCCACC
42679 ACGTATCC
1 ACGTATCC
42687 AAACCACTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.46, G:0.06, T:0.23
Consensus pattern (20 bp):
ACGTATCCCAATCTCCCACC
Left flanking sequence: Indices 42139 -- 42638
AAGCCAACGGTTGGTGGATAGCGATGGAACTCGCTACGGGAGAACGCTTCAAACCCGATGAAACT
GTAGGGGATCGCTCATGTAGGGGATCGCTCATGTAGAGGACATGTAGGAGGACATGTAGGAGACG
GTCATGTAGGAGGGTCGATTATGTAGGAGACGGATCGTAGCAGGGCCAATCACGTAGTACGACGG
GCACGCAAAGGAGACGTAATGGCACATGGCCATCGTACGACTGGCATTGGACCGAGGTCAACGCC
AGGCTGGCACCAGATTGGCACAAGGGTGGCACCAGGCTGGCAACAAGCTGATACCCAGCCATTGA
CCCGATGACCAACAGTTCAACCTCCTTTCGTCCACATCAGATGCAATTGATAACCCTGAAACGAC
CCCTGACTTAACCCAACACGTATCCCAACCACTCACCAGGTCTCCCAACCACTGTATCTTAACCA
CTTACCAGGTATCCAAACCACCCTCAACGTAACTAAACACTCTCA
Right flanking sequence: Indices 42687 -- 43186
AAACCACTCTCTACCACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGCCATGGCC
AATTGGCCAATTGTTTCCCAATTCCACACGAACCCGGCGCCGAGCATGCTCAACGAGCCCCCAGC
ATGCTCAACGAGCCCCAAGCATGGAGCCCAAGCCTCCATGCGCTATGACGGACGATGGCTTAGGC
GATCGAATGGTTTGGGTGCTTACAAAATACTCACCTTACCCCGGAATCCCTACGTGGCGCTAACC
ACCGCCATCGCTCCTACCAGGCCCACACCTGGAACGGGTCCAATGGCCACCCCTTGTGCAATTGT
CTCCAAAAGATGGGGCAGATCAGTTGTTCCGCTCTTGTTCCACCCGTTGTCCACCCGTTGTCCAC
CCGTTGTCCACCCGTTGTCCACCCGTTGTTCCCCGTTCCACCTTGTTCCCGTTGTTCCGTCCTCT
TCACCAGTTGTTCCGAACAATGCCCGATTAAGTTTTTAGTCACCT
Found at i:42819 original size:20 final size:20
Alignment explanation
Indices: 42794--42839 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
42784 CCCGGCGCCG
*
42794 AGCATGCTCAACGAGCCCCC
1 AGCATGCTCAACGAGCCCCA
42814 AGCATGCTCAACGAGCCCCA
1 AGCATGCTCAACGAGCCCCA
42834 AGCATG
1 AGCATG
42840 GAGCCCAAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.39, G:0.22, T:0.11
Consensus pattern (20 bp):
AGCATGCTCAACGAGCCCCA
Left flanking sequence: Indices 42294 -- 42793
GGAGACGGATCGTAGCAGGGCCAATCACGTAGTACGACGGGCACGCAAAGGAGACGTAATGGCAC
ATGGCCATCGTACGACTGGCATTGGACCGAGGTCAACGCCAGGCTGGCACCAGATTGGCACAAGG
GTGGCACCAGGCTGGCAACAAGCTGATACCCAGCCATTGACCCGATGACCAACAGTTCAACCTCC
TTTCGTCCACATCAGATGCAATTGATAACCCTGAAACGACCCCTGACTTAACCCAACACGTATCC
CAACCACTCACCAGGTCTCCCAACCACTGTATCTTAACCACTTACCAGGTATCCAAACCACCCTC
AACGTAACTAAACACTCTCAACGTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCACGTA
TCCAAACCACTCTCTACCACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGCCATG
GCCAATTGGCCAATTGTTTCCCAATTCCACACGAACCCGGCGCCG
Right flanking sequence: Indices 42840 -- 43339
GAGCCCAAGCCTCCATGCGCTATGACGGACGATGGCTTAGGCGATCGAATGGTTTGGGTGCTTAC
AAAATACTCACCTTACCCCGGAATCCCTACGTGGCGCTAACCACCGCCATCGCTCCTACCAGGCC
CACACCTGGAACGGGTCCAATGGCCACCCCTTGTGCAATTGTCTCCAAAAGATGGGGCAGATCAG
TTGTTCCGCTCTTGTTCCACCCGTTGTCCACCCGTTGTCCACCCGTTGTCCACCCGTTGTCCACC
CGTTGTTCCCCGTTCCACCTTGTTCCCGTTGTTCCGTCCTCTTCACCAGTTGTTCCGAACAATGC
CCGATTAAGTTTTTAGTCACCTGAGCCGCTGGTATTGTCTCCGACAAAAGAATGGGCCGATAATC
GCTAGGCGAAGCCCACCTGAAACAAGATCAAGGTGGGCCCACTGGTTGCCGATCCTGCGGGTATC
CTGTGCCCGGGCATCGACGGTATACCCCACCAGACACTCGCAGGC
Found at i:43064 original size:11 final size:11
Alignment explanation
Indices: 43050--43105 Score: 112
Period size: 11 Copynumber: 5.1 Consensus size: 11
43040 CCGCTCTTGT
43050 TCCACCCGTTG
1 TCCACCCGTTG
43061 TCCACCCGTTG
1 TCCACCCGTTG
43072 TCCACCCGTTG
1 TCCACCCGTTG
43083 TCCACCCGTTG
1 TCCACCCGTTG
43094 TCCACCCGTTG
1 TCCACCCGTTG
43105 T
1 T
43106 TCCCCGTTCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 45 1.00
ACGTcount: A:0.09, C:0.45, G:0.18, T:0.29
Consensus pattern (11 bp):
TCCACCCGTTG
Left flanking sequence: Indices 42550 -- 43049
ATCCCAACCACTCACCAGGTCTCCCAACCACTGTATCTTAACCACTTACCAGGTATCCAAACCAC
CCTCAACGTAACTAAACACTCTCAACGTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCA
CGTATCCAAACCACTCTCTACCACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGC
CATGGCCAATTGGCCAATTGTTTCCCAATTCCACACGAACCCGGCGCCGAGCATGCTCAACGAGC
CCCCAGCATGCTCAACGAGCCCCAAGCATGGAGCCCAAGCCTCCATGCGCTATGACGGACGATGG
CTTAGGCGATCGAATGGTTTGGGTGCTTACAAAATACTCACCTTACCCCGGAATCCCTACGTGGC
GCTAACCACCGCCATCGCTCCTACCAGGCCCACACCTGGAACGGGTCCAATGGCCACCCCTTGTG
CAATTGTCTCCAAAAGATGGGGCAGATCAGTTGTTCCGCTCTTGT
Right flanking sequence: Indices 43106 -- 43605
TCCCCGTTCCACCTTGTTCCCGTTGTTCCGTCCTCTTCACCAGTTGTTCCGAACAATGCCCGATT
AAGTTTTTAGTCACCTGAGCCGCTGGTATTGTCTCCGACAAAAGAATGGGCCGATAATCGCTAGG
CGAAGCCCACCTGAAACAAGATCAAGGTGGGCCCACTGGTTGCCGATCCTGCGGGTATCCTGTGC
CCGGGCATCGACGGTATACCCCACCAGACACTCGCAGGCGTCCTGCAGGAGGCGGTCCTCGGGCC
CCGAGCCAGTGGAACCATCAGGGTGCGGAGGGGACACCCGCTAGCAACGGTACCCCTCTCCACGC
GAGCCCAATGGGGCCACAAACCCGTCGTCTGGGCTGCTTGCCGGCTTAGTGCCTAAGCCGGCTCT
TGGCGTCTATTTTAAGCACCTGTGGGTCTCATGCACTTGCCGTGCCGGCAGGCCAAGCATTGCTT
ACGATCGCCCCCCTACCGGACGATGACCCCATGGTAGATAATTGC
Found at i:43078 original size:22 final size:22
Alignment explanation
Indices: 43050--43113 Score: 112
Period size: 22 Copynumber: 3.0 Consensus size: 22
43040 CCGCTCTTGT
43050 TCCACCCGTTGTCCACCCGTTG
1 TCCACCCGTTGTCCACCCGTTG
43072 TCCACCCGTTGTCCACCCGTTG
1 TCCACCCGTTGTCCACCCGTTG
*
43094 TCCACCCGTTGTTC-CCCGTT
1 TCCACCCGTTGTCCACCCGTT
43114 CCACCTTGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
21 6 0.15
22 35 0.85
ACGTcount: A:0.08, C:0.45, G:0.17, T:0.30
Consensus pattern (22 bp):
TCCACCCGTTGTCCACCCGTTG
Left flanking sequence: Indices 42550 -- 43049
ATCCCAACCACTCACCAGGTCTCCCAACCACTGTATCTTAACCACTTACCAGGTATCCAAACCAC
CCTCAACGTAACTAAACACTCTCAACGTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCA
CGTATCCAAACCACTCTCTACCACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGC
CATGGCCAATTGGCCAATTGTTTCCCAATTCCACACGAACCCGGCGCCGAGCATGCTCAACGAGC
CCCCAGCATGCTCAACGAGCCCCAAGCATGGAGCCCAAGCCTCCATGCGCTATGACGGACGATGG
CTTAGGCGATCGAATGGTTTGGGTGCTTACAAAATACTCACCTTACCCCGGAATCCCTACGTGGC
GCTAACCACCGCCATCGCTCCTACCAGGCCCACACCTGGAACGGGTCCAATGGCCACCCCTTGTG
CAATTGTCTCCAAAAGATGGGGCAGATCAGTTGTTCCGCTCTTGT
Right flanking sequence: Indices 43114 -- 43613
CCACCTTGTTCCCGTTGTTCCGTCCTCTTCACCAGTTGTTCCGAACAATGCCCGATTAAGTTTTT
AGTCACCTGAGCCGCTGGTATTGTCTCCGACAAAAGAATGGGCCGATAATCGCTAGGCGAAGCCC
ACCTGAAACAAGATCAAGGTGGGCCCACTGGTTGCCGATCCTGCGGGTATCCTGTGCCCGGGCAT
CGACGGTATACCCCACCAGACACTCGCAGGCGTCCTGCAGGAGGCGGTCCTCGGGCCCCGAGCCA
GTGGAACCATCAGGGTGCGGAGGGGACACCCGCTAGCAACGGTACCCCTCTCCACGCGAGCCCAA
TGGGGCCACAAACCCGTCGTCTGGGCTGCTTGCCGGCTTAGTGCCTAAGCCGGCTCTTGGCGTCT
ATTTTAAGCACCTGTGGGTCTCATGCACTTGCCGTGCCGGCAGGCCAAGCATTGCTTACGATCGC
CCCCCTACCGGACGATGACCCCATGGTAGATAATTGCTGCCAGGG
Found at i:43087 original size:33 final size:32
Alignment explanation
Indices: 43050--43113 Score: 110
Period size: 33 Copynumber: 2.0 Consensus size: 32
43040 CCGCTCTTGT
43050 TCCACCCGTTGTCCACCCGTTGTCCACCCGTTG
1 TCCACCCGTTGTCCACCCGTTGTCC-CCCGTTG
*
43083 TCCACCCGTTGTCCACCCGTTGTTCCCCGTT
1 TCCACCCGTTGTCCACCCGTTGTCCCCCGTT
43114 CCACCTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 6 0.20
33 24 0.80
ACGTcount: A:0.08, C:0.45, G:0.17, T:0.30
Consensus pattern (32 bp):
TCCACCCGTTGTCCACCCGTTGTCCCCCGTTG
Left flanking sequence: Indices 42550 -- 43049
ATCCCAACCACTCACCAGGTCTCCCAACCACTGTATCTTAACCACTTACCAGGTATCCAAACCAC
CCTCAACGTAACTAAACACTCTCAACGTATCCCAATCTCCCACCACGTATCCCAATCTCTCACCA
CGTATCCAAACCACTCTCTACCACTTTCACCACTCCAACCGCTTCCAACTCTCCAACCGCTTAGC
CATGGCCAATTGGCCAATTGTTTCCCAATTCCACACGAACCCGGCGCCGAGCATGCTCAACGAGC
CCCCAGCATGCTCAACGAGCCCCAAGCATGGAGCCCAAGCCTCCATGCGCTATGACGGACGATGG
CTTAGGCGATCGAATGGTTTGGGTGCTTACAAAATACTCACCTTACCCCGGAATCCCTACGTGGC
GCTAACCACCGCCATCGCTCCTACCAGGCCCACACCTGGAACGGGTCCAATGGCCACCCCTTGTG
CAATTGTCTCCAAAAGATGGGGCAGATCAGTTGTTCCGCTCTTGT
Right flanking sequence: Indices 43114 -- 43613
CCACCTTGTTCCCGTTGTTCCGTCCTCTTCACCAGTTGTTCCGAACAATGCCCGATTAAGTTTTT
AGTCACCTGAGCCGCTGGTATTGTCTCCGACAAAAGAATGGGCCGATAATCGCTAGGCGAAGCCC
ACCTGAAACAAGATCAAGGTGGGCCCACTGGTTGCCGATCCTGCGGGTATCCTGTGCCCGGGCAT
CGACGGTATACCCCACCAGACACTCGCAGGCGTCCTGCAGGAGGCGGTCCTCGGGCCCCGAGCCA
GTGGAACCATCAGGGTGCGGAGGGGACACCCGCTAGCAACGGTACCCCTCTCCACGCGAGCCCAA
TGGGGCCACAAACCCGTCGTCTGGGCTGCTTGCCGGCTTAGTGCCTAAGCCGGCTCTTGGCGTCT
ATTTTAAGCACCTGTGGGTCTCATGCACTTGCCGTGCCGGCAGGCCAAGCATTGCTTACGATCGC
CCCCCTACCGGACGATGACCCCATGGTAGATAATTGCTGCCAGGG
Found at i:46190 original size:9 final size:9
Alignment explanation
Indices: 46178--46214 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
46168 GACAGGTATT
46178 GTAGAACGA
1 GTAGAACGA
46187 GTAGAACGA
1 GTAGAACGA
*
46196 GTAGAACGG
1 GTAGAACGA
46205 GTAGAACGA
1 GTAGAACGA
46214 G
1 G
46215 AGTAGTGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.41, C:0.11, G:0.38, T:0.11
Consensus pattern (9 bp):
GTAGAACGA
Left flanking sequence: Indices 45678 -- 46177
GCGGGGCTTCGCTGAGGATCGAGGTTACGTCGAAAAAATATGGGAATGTGGAACCGAGCAGTCAG
GGCTGATGCTCACCATCTTATTGTTTGCCCAGGTTCTTCCCACGCAGCGCCAGATCCCACCTCCC
AGAACAATATCCCCAGACATAAAATGCCAAAAGTGTCGGGGCGGCCCACGAGACGACTCGAGGCA
TCGGCACGGCCCAGCCGACGTTTCAGGCGAGTTACGCGACTGATGTGATTTTATGTCGGGCATTT
CAAGACTGAATTTCTGGGCTCAGTTGCAGACACTGGTAGAGGTAGAGACGGGCGGTGGGAATGGA
GACAATGGGACCAGGGTCAGGTGGACACGGTGATGCACTGTGTACCCCGTCGGGGCTGAGGGGAC
GGCCGCAGCGTGGGCTCGGGAAGAGCCTTGGATTTGGGGCCGTGTGGGGGATCCGTGGGGGTCCC
ATGTAAGTGACCGATGCTGTCAAAAAGGCAGGCGTGACAGGTATT
Right flanking sequence: Indices 46215 -- 46714
AGTAGTGGTTATGGCCAGGTTCCATCTCGCTTGGCGTAACCGTTTCTGTTGCTAGCGACCACTGG
GGTGGGAGGACCCGAAACGACTTTTGACGACATTTTCAGTCATACCGAAGCAACCGACGCAGTGC
TGGCACGTCGGTGGTTCCCCTGTTGCCCCTATTTTTGAGATACGCGGATGTGTGGATTGACGGGA
TCCAAGGTCGATCACAATTGTTTACGGTGGGGGAGGCCTTAGCCACCGCAACGGTTCCAAAAAGC
TTATTACGGTGCCAAGAGGGCGTGCTACAGTGTGGCTTGTGGACACGCAGGAAGTGGAGAATATG
AATGGTTGGGAGGGGGGACTGGATGATTCAAATGAGCCTGTTCGGTGGTGATAACGGGTTAAGGG
TTGACTGGGTTAACTTGGTTGACTGTGTTAACAGGGTTAAATGGGTTAAATGGGTTAAATGGGTT
AACTGGGTTAACTGGGTTAAATGGGTTAACTGGGTTAACTGGGTT
Found at i:46624 original size:9 final size:9
Alignment explanation
Indices: 46591--46768 Score: 211
Period size: 9 Copynumber: 20.2 Consensus size: 9
46581 TCGGTGGTGA
46591 TAAC-GGGT
1 TAACTGGGT
46599 TAA--GGGT
1 TAACTGGGT
*
46606 TGACTGGGT
1 TAACTGGGT
*
46615 TAACTTGGT
1 TAACTGGGT
* *
46624 TGACTGTGT
1 TAACTGGGT
*
46633 TAACAGGGT
1 TAACTGGGT
*
46642 TAAATGGGT
1 TAACTGGGT
*
46651 TAAATGGGT
1 TAACTGGGT
*
46660 TAAATGGGT
1 TAACTGGGT
46669 TAACTGGGT
1 TAACTGGGT
46678 TAACTGGGT
1 TAACTGGGT
*
46687 TAAATGGGT
1 TAACTGGGT
46696 TAACTGGGT
1 TAACTGGGT
46705 TAACTGGGT
1 TAACTGGGT
46714 TAACTGGGT
1 TAACTGGGT
*
46723 CAACTGGGT
1 TAACTGGGT
46732 TAACTGGGT
1 TAACTGGGT
46741 TAACTGGGT
1 TAACTGGGT
* *
46750 TGACT-GTT
1 TAACTGGGT
*
46758 TTACTGGGT
1 TAACTGGGT
46767 TA
1 TA
46769 GAATATCTCT
Statistics
Matches: 146, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
7 6 0.04
8 9 0.06
9 131 0.90
ACGTcount: A:0.24, C:0.09, G:0.33, T:0.34
Consensus pattern (9 bp):
TAACTGGGT
Left flanking sequence: Indices 46091 -- 46590
AGCCTTGGATTTGGGGCCGTGTGGGGGATCCGTGGGGGTCCCATGTAAGTGACCGATGCTGTCAA
AAAGGCAGGCGTGACAGGTATTGTAGAACGAGTAGAACGAGTAGAACGGGTAGAACGAGAGTAGT
GGTTATGGCCAGGTTCCATCTCGCTTGGCGTAACCGTTTCTGTTGCTAGCGACCACTGGGGTGGG
AGGACCCGAAACGACTTTTGACGACATTTTCAGTCATACCGAAGCAACCGACGCAGTGCTGGCAC
GTCGGTGGTTCCCCTGTTGCCCCTATTTTTGAGATACGCGGATGTGTGGATTGACGGGATCCAAG
GTCGATCACAATTGTTTACGGTGGGGGAGGCCTTAGCCACCGCAACGGTTCCAAAAAGCTTATTA
CGGTGCCAAGAGGGCGTGCTACAGTGTGGCTTGTGGACACGCAGGAAGTGGAGAATATGAATGGT
TGGGAGGGGGGACTGGATGATTCAAATGAGCCTGTTCGGTGGTGA
Right flanking sequence: Indices 46769 -- 47268
GAATATCTCTCAGTATTGTAGCTGGGTTAACCTGAATTCATCCACGAAGCTAGAAGCCTGGGTAG
TGGTGTTAACGTAACTTCCAAGGGCTCAATACGTAACCACTGGGTTCAAACACTTATGGTGTGGA
AAACTCCCATGGCATCTTAGACCAAAACGCGTAGTCAACAGCATGGCCCTCTACCTCTAGCCCAC
TTGTCAACTCCCCAAGACCCATTCTGGGTCGAATTACATAATCACAAGATCTTCTACACCTACTT
GGTGATCTGATCATCGCGTTCGCTCTCCACACTAAGATGCGAATACTACACAAATACTCCGCTAC
CACACCACTAACATACCGCTACCACTAGCTGGTCTACTATCCGGTCTCGGTCACACCCCATATTC
TCTCCCCTTCTCTACCCACCCCTCTCTCCCCACCCCTCTCTCCCCACCCTAATCCACCACCTCTC
CTGCTACCATCACCACCGTCCCTACCAATCTATACACTCCCGCGA
Found at i:47197 original size:12 final size:14
Alignment explanation
Indices: 47162--47207 Score: 74
Period size: 14 Copynumber: 3.2 Consensus size: 14
47152 CATATTCTCT
*
47162 CCCCTTCTCTACCCA
1 CCCC-TCTCTCCCCA
47177 CCCCTCTCTCCCCA
1 CCCCTCTCTCCCCA
47191 CCCCTCTCTCCCCA
1 CCCCTCTCTCCCCA
47205 CCC
1 CCC
47208 TAATCCACCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 26 0.87
15 4 0.13
ACGTcount: A:0.09, C:0.70, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCCTCTCTCCCCA
Left flanking sequence: Indices 46662 -- 47161
AATGGGTTAACTGGGTTAACTGGGTTAAATGGGTTAACTGGGTTAACTGGGTTAACTGGGTCAAC
TGGGTTAACTGGGTTAACTGGGTTGACTGTTTTACTGGGTTAGAATATCTCTCAGTATTGTAGCT
GGGTTAACCTGAATTCATCCACGAAGCTAGAAGCCTGGGTAGTGGTGTTAACGTAACTTCCAAGG
GCTCAATACGTAACCACTGGGTTCAAACACTTATGGTGTGGAAAACTCCCATGGCATCTTAGACC
AAAACGCGTAGTCAACAGCATGGCCCTCTACCTCTAGCCCACTTGTCAACTCCCCAAGACCCATT
CTGGGTCGAATTACATAATCACAAGATCTTCTACACCTACTTGGTGATCTGATCATCGCGTTCGC
TCTCCACACTAAGATGCGAATACTACACAAATACTCCGCTACCACACCACTAACATACCGCTACC
ACTAGCTGGTCTACTATCCGGTCTCGGTCACACCCCATATTCTCT
Right flanking sequence: Indices 47208 -- 47707
TAATCCACCACCTCTCCTGCTACCATCACCACCGTCCCTACCAATCTATACACTCCCGCGAAATT
TCACCACCGCGATGCCCCGAGAGCCCCCCACCCCAGAGGAGATCGAGCAGCGCCGCCAGCTCGCC
AAGACCCTCGTGCTCCCGCCCGGGATGCTGAAGGCCGAGTACAAGCGCCAGAAGCGCCAGCAGCT
GTGGGAAGAGGGCAAGGAGGCCTACCGCCGCCAGAAGCGCCAGCGCAAAAAGGCTGCGGAGCGCA
GACAGAAGGAGCTCGGGCTCAAGCCGCCCAAACGGTTCCCGCCCCGCGAGCAGAAGCCCCAGACC
ACGGGGTTTGTGTTCGACTGTGCCTTCGACGACCTCATGAACCAGCGCGAGATCGTGTCGCTCTC
CAACCAGATCGCCCGCGCGTACCTGGCCCGGCGGTTCTGCCAGTACCAGGTCCCGCTCACGATTG
CCCACTTTGACCAGCGGCTCAAGACCCGGTTCGAGAACGACTTGA
Found at i:48089 original size:12 final size:12
Alignment explanation
Indices: 48072--48096 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48062 TCCACAAGGG
48072 GGAAAATGGTGA
1 GGAAAATGGTGA
48084 GGAAAATGGTGA
1 GGAAAATGGTGA
48096 G
1 G
48097 AATGGTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.16
Consensus pattern (12 bp):
GGAAAATGGTGA
Left flanking sequence: Indices 47572 -- 48071
AACCAGCGCGAGATCGTGTCGCTCTCCAACCAGATCGCCCGCGCGTACCTGGCCCGGCGGTTCTG
CCAGTACCAGGTCCCGCTCACGATTGCCCACTTTGACCAGCGGCTCAAGACCCGGTTCGAGAACG
ACTTGACCGACTCGCACTACTGGAAGGGGGTCGAGTTCAGCGAGAAGCCCATCGAGGAGCTCTAC
GACCTCGCGCAGGTGACCTACTTGACCGCGGACACCGACGAGGTGATCGAGGAGCTCGCACCCAA
CCACACCTACGTCATCGGGGGCATTGTGGACAAGAACCGCCACAAGAGCCTCTGTGTGGACAAGG
CGCAGAAGTTGGGCATCAAGGTGGGCCGGTTGCCGCTCGACAAGTACATCACGATCAACGGGCGG
TCGGTGTTGGCCACCCTGCACGTGTTTGAGATCTGCTGTCGGTGGATCGAGTGTCGGGACTGGGA
GAAGGCGTTCAACGAGGTGTTGCCTCCGCGCAGACTCCACAAGGG
Right flanking sequence: Indices 48097 -- 48596
AATGGTGAGAATGGTGAGGGTGAGACGGAAGAAACTGGTGAGACTGGTGAGACTGGTGGTGACGA
AGATGGTGAGACCAACGAGGCTGGTGAGATGAATGAGACGGAGACCACCCAACTTGGGTCTAACA
TGGTGGAGTCTACTGAGACCGAGTCTAACCAGAAGGAGGGTACTCAGATGGAACCAACCGTGGCT
GAACCCGAGGCTGAGCCTACTAATTGATTCTCGAAACTACGACTGATTTCAAAACTACGACTGCC
CATACTAGACTCTTAGGTCGTCTCACTAGACTCTGGTCGTCTCAACCATCCACTATACGAGCTCA
CCCACCACAGGCTCGTCTAGCGGGCCACCGGAGGCGTGACCACCGCATGACCACCGCATGACTGC
CGGCTGCACCTCACGGCTCTTCCCGATTTATAGACCAATGCATTACTCGTCCTCATTGGCTACCA
CGGTATTTTTCGTGTGGGTGGCCTGACCACTCCCACCTGGGACGC
Found at i:48144 original size:9 final size:9
Alignment explanation
Indices: 48090--48154 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
48080 GTGAGGAAAA
*
48090 TGGTGAGAA
1 TGGTGAGAC
*
48099 TGGTGAGAA
1 TGGTGAGAC
48108 TGGTGAG--
1 TGGTGAGAC
48115 -GGTGAGAC
1 TGGTGAGAC
* *
48123 -GGAAGAAAC
1 TGG-TGAGAC
48132 TGGTGAGAC
1 TGGTGAGAC
48141 TGGTGAGAC
1 TGGTGAGAC
48150 TGGTG
1 TGGTG
48155 GTGACGAAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
6 6 0.12
8 2 0.04
9 38 0.79
10 2 0.04
ACGTcount: A:0.28, C:0.06, G:0.46, T:0.20
Consensus pattern (9 bp):
TGGTGAGAC
Left flanking sequence: Indices 47590 -- 48089
TCGCTCTCCAACCAGATCGCCCGCGCGTACCTGGCCCGGCGGTTCTGCCAGTACCAGGTCCCGCT
CACGATTGCCCACTTTGACCAGCGGCTCAAGACCCGGTTCGAGAACGACTTGACCGACTCGCACT
ACTGGAAGGGGGTCGAGTTCAGCGAGAAGCCCATCGAGGAGCTCTACGACCTCGCGCAGGTGACC
TACTTGACCGCGGACACCGACGAGGTGATCGAGGAGCTCGCACCCAACCACACCTACGTCATCGG
GGGCATTGTGGACAAGAACCGCCACAAGAGCCTCTGTGTGGACAAGGCGCAGAAGTTGGGCATCA
AGGTGGGCCGGTTGCCGCTCGACAAGTACATCACGATCAACGGGCGGTCGGTGTTGGCCACCCTG
CACGTGTTTGAGATCTGCTGTCGGTGGATCGAGTGTCGGGACTGGGAGAAGGCGTTCAACGAGGT
GTTGCCTCCGCGCAGACTCCACAAGGGGGAAAATGGTGAGGAAAA
Right flanking sequence: Indices 48155 -- 48654
GTGACGAAGATGGTGAGACCAACGAGGCTGGTGAGATGAATGAGACGGAGACCACCCAACTTGGG
TCTAACATGGTGGAGTCTACTGAGACCGAGTCTAACCAGAAGGAGGGTACTCAGATGGAACCAAC
CGTGGCTGAACCCGAGGCTGAGCCTACTAATTGATTCTCGAAACTACGACTGATTTCAAAACTAC
GACTGCCCATACTAGACTCTTAGGTCGTCTCACTAGACTCTGGTCGTCTCAACCATCCACTATAC
GAGCTCACCCACCACAGGCTCGTCTAGCGGGCCACCGGAGGCGTGACCACCGCATGACCACCGCA
TGACTGCCGGCTGCACCTCACGGCTCTTCCCGATTTATAGACCAATGCATTACTCGTCCTCATTG
GCTACCACGGTATTTTTCGTGTGGGTGGCCTGACCACTCCCACCTGGGACGCGAGATCATGTACG
GGTCGATCCGGTGGCAAATGCCGTGGGAACGCACGTGAAAGAGGG
Found at i:48396 original size:19 final size:21
Alignment explanation
Indices: 48360--48400 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
48350 GACTGCCCAT
48360 ACTAGACTCTTAGGTCGTCTC
1 ACTAGACTCTTAGGTCGTCTC
48381 ACTAGACTC-T-GGTCGTCTC
1 ACTAGACTCTTAGGTCGTCTC
48400 A
1 A
48401 ACCATCCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 1 0.05
21 9 0.45
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.32
Consensus pattern (21 bp):
ACTAGACTCTTAGGTCGTCTC
Left flanking sequence: Indices 47860 -- 48359
GACAAGAACCGCCACAAGAGCCTCTGTGTGGACAAGGCGCAGAAGTTGGGCATCAAGGTGGGCCG
GTTGCCGCTCGACAAGTACATCACGATCAACGGGCGGTCGGTGTTGGCCACCCTGCACGTGTTTG
AGATCTGCTGTCGGTGGATCGAGTGTCGGGACTGGGAGAAGGCGTTCAACGAGGTGTTGCCTCCG
CGCAGACTCCACAAGGGGGAAAATGGTGAGGAAAATGGTGAGAATGGTGAGAATGGTGAGGGTGA
GACGGAAGAAACTGGTGAGACTGGTGAGACTGGTGGTGACGAAGATGGTGAGACCAACGAGGCTG
GTGAGATGAATGAGACGGAGACCACCCAACTTGGGTCTAACATGGTGGAGTCTACTGAGACCGAG
TCTAACCAGAAGGAGGGTACTCAGATGGAACCAACCGTGGCTGAACCCGAGGCTGAGCCTACTAA
TTGATTCTCGAAACTACGACTGATTTCAAAACTACGACTGCCCAT
Right flanking sequence: Indices 48401 -- 48900
ACCATCCACTATACGAGCTCACCCACCACAGGCTCGTCTAGCGGGCCACCGGAGGCGTGACCACC
GCATGACCACCGCATGACTGCCGGCTGCACCTCACGGCTCTTCCCGATTTATAGACCAATGCATT
ACTCGTCCTCATTGGCTACCACGGTATTTTTCGTGTGGGTGGCCTGACCACTCCCACCTGGGACG
CGAGATCATGTACGGGTCGATCCGGTGGCAAATGCCGTGGGAACGCACGTGAAAGAGGGGAGTGG
ACAGTGGTCTCCTATTGGTGTGACGTAATGGCTAGCCGTGTCGTCGCCCAAAACGGAAGCGGGTG
GAGCAGCCCCTCTTCTATTGTTGGACCAAGCGGGGGTAGGCCACCAGAGGGGAATCGGGACATTC
CCGGCCCCCTATCTGCTCCCCTATTTGCTCCCCATTCGTGTCGTCGTTCCCCTCTTTACCCCAAC
ATATGCCACCATGACCTCATCCACGACCCATTGTGCCGGACACTC
Found at i:48474 original size:11 final size:11
Alignment explanation
Indices: 48458--48483 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48448 ACCGGAGGCG
48458 TGACCACCGCA
1 TGACCACCGCA
48469 TGACCACCGCA
1 TGACCACCGCA
48480 TGAC
1 TGAC
48484 TGCCGGCTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.42, G:0.19, T:0.12
Consensus pattern (11 bp):
TGACCACCGCA
Left flanking sequence: Indices 47958 -- 48457
GCGGTCGGTGTTGGCCACCCTGCACGTGTTTGAGATCTGCTGTCGGTGGATCGAGTGTCGGGACT
GGGAGAAGGCGTTCAACGAGGTGTTGCCTCCGCGCAGACTCCACAAGGGGGAAAATGGTGAGGAA
AATGGTGAGAATGGTGAGAATGGTGAGGGTGAGACGGAAGAAACTGGTGAGACTGGTGAGACTGG
TGGTGACGAAGATGGTGAGACCAACGAGGCTGGTGAGATGAATGAGACGGAGACCACCCAACTTG
GGTCTAACATGGTGGAGTCTACTGAGACCGAGTCTAACCAGAAGGAGGGTACTCAGATGGAACCA
ACCGTGGCTGAACCCGAGGCTGAGCCTACTAATTGATTCTCGAAACTACGACTGATTTCAAAACT
ACGACTGCCCATACTAGACTCTTAGGTCGTCTCACTAGACTCTGGTCGTCTCAACCATCCACTAT
ACGAGCTCACCCACCACAGGCTCGTCTAGCGGGCCACCGGAGGCG
Right flanking sequence: Indices 48484 -- 48983
TGCCGGCTGCACCTCACGGCTCTTCCCGATTTATAGACCAATGCATTACTCGTCCTCATTGGCTA
CCACGGTATTTTTCGTGTGGGTGGCCTGACCACTCCCACCTGGGACGCGAGATCATGTACGGGTC
GATCCGGTGGCAAATGCCGTGGGAACGCACGTGAAAGAGGGGAGTGGACAGTGGTCTCCTATTGG
TGTGACGTAATGGCTAGCCGTGTCGTCGCCCAAAACGGAAGCGGGTGGAGCAGCCCCTCTTCTAT
TGTTGGACCAAGCGGGGGTAGGCCACCAGAGGGGAATCGGGACATTCCCGGCCCCCTATCTGCTC
CCCTATTTGCTCCCCATTCGTGTCGTCGTTCCCCTCTTTACCCCAACATATGCCACCATGACCTC
ATCCACGACCCATTGTGCCGGACACTCCGGCTCCGAGCAAGCAAGGGAGCCAGCGGTGCGAGCAA
CGGACGAGGGTGGGGCCGGTGGGGGCCGTAGGGGTTGTCCAGAGC
Found at i:49650 original size:37 final size:37
Alignment explanation
Indices: 49561--49670 Score: 136
Period size: 37 Copynumber: 3.0 Consensus size: 37
49551 CTATCAATTG
* *
49561 ACCAAGACTGGCTCGTCAACGGTTATGTCTTGGCAC--C
1 ACCAAGACTGGCTCGTCAACGG-T-TGCCTTGGCGCTAC
* * *
49598 A-CAAGTCTGTCTCGTCAGCGGTTGCCTTGGCGCTAC
1 ACCAAGACTGGCTCGTCAACGGTTGCCTTGGCGCTAC
49634 ACCAAGACTGGCTCGTCAACGGTTGCCTTGGCGCTAC
1 ACCAAGACTGGCTCGTCAACGGTTGCCTTGGCGCTAC
49671 TCGCCATCGC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.15
35 1 0.02
36 19 0.31
37 33 0.53
ACGTcount: A:0.18, C:0.31, G:0.26, T:0.25
Consensus pattern (37 bp):
ACCAAGACTGGCTCGTCAACGGTTGCCTTGGCGCTAC
Left flanking sequence: Indices 49061 -- 49560
ACCCCTTTTCCCAATTGGTACATCCGTTTTGGGCGTAGCGGTGATAAGAGGGGAAGTGTGAATGG
GTGTGACTTGTGTTGAGATAACAGCTGGGGACAGAGATATTCAAGGGTGTTAGTTTGTGGCCCCA
TGTACTCCAAGTCTCTACACCCAAAAATCACGATTTGATGGTCAAAAAACATTTAAAAGTTCAAG
CATCTACCGTAGTTCTTAGACATTCCACTACATTCCAGTACTCACCGTACACGTAGCAATGGCTT
ACACCAATGGTCTACATTCTTGTAATTAAACAACCAATGGCTCTCAAAATATAAGCCAACCATCA
GCGAATCCACTAGCCACACCATCTTCACAATCCAAACACCAGCCGTCCACATCCCACCAACCCAC
TATTCCACCATCCATTAATTACCAGCATACACTAAACCAACTAATCTAAAAATATTCCTCATGTA
ATCAGATGTTCGTCATTCAGATCTTCTTTTCTTAACTATCAATTG
Right flanking sequence: Indices 49671 -- 50170
TCGCCATCGCCATCTACACTCGTTCCTATTCCCATGTATTATGAATTTATATCGAGGACCAGCCT
CTCCTAACCTTCCCAATCCCAATTGACCTAAAAAAGGTCGGCAAACTCGGCACAGTTGGGGTGCA
CCAAGTTGTGGTCAAACACCGGCGATTCGTGGTTCGCGGTGGCTCCAAAGTTCTGCATGCCACAC
CCGTTGTAGTTGGCCAAGATCCGGTCAAACAGCTTGCAGTCCGTCGCCACCAACCGGTTCTGCCA
GTCAATCACCAACGGCTGCTGGGCCGCCTTGGTGAAGTCCAGGGCACACAACTCTTCGGATGCGC
GCTTACCCACGAGAGCGTGGATAATCAGCTTGTTCTCGGGGTGGACGTCCACGCACTCGTCGAGC
AAGAACTGGAGGTCGCGGCCCTTGAGCGCGTCGGTCCGGGTCTCAATCTGGTAGTTGTTGTTGCA
GTGCAAGTTCAACTTGGAGTACAACTGGGTGGTCAGCGCGCAGTT
Found at i:50296 original size:19 final size:18
Alignment explanation
Indices: 50242--50300 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
50232 ATCATGGCGC
50242 TGTGTGTGGGTGGATGTAGTG
1 TGTGTGTGGG-GG-TGT-GTG
* *
50263 TGTGTGTGTGTGTGTGCTG
1 TGTGTGTGGGGGTGTG-TG
50282 TGTGTGTGGGGGTGTGTG
1 TGTGTGTGGGGGTGTGTG
50300 T
1 T
50301 TTGAGTGGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 4 0.12
19 19 0.58
20 1 0.03
21 9 0.27
ACGTcount: A:0.03, C:0.02, G:0.53, T:0.42
Consensus pattern (18 bp):
TGTGTGTGGGGGTGTGTG
Left flanking sequence: Indices 49742 -- 50241
ACCTTCCCAATCCCAATTGACCTAAAAAAGGTCGGCAAACTCGGCACAGTTGGGGTGCACCAAGT
TGTGGTCAAACACCGGCGATTCGTGGTTCGCGGTGGCTCCAAAGTTCTGCATGCCACACCCGTTG
TAGTTGGCCAAGATCCGGTCAAACAGCTTGCAGTCCGTCGCCACCAACCGGTTCTGCCAGTCAAT
CACCAACGGCTGCTGGGCCGCCTTGGTGAAGTCCAGGGCACACAACTCTTCGGATGCGCGCTTAC
CCACGAGAGCGTGGATAATCAGCTTGTTCTCGGGGTGGACGTCCACGCACTCGTCGAGCAAGAAC
TGGAGGTCGCGGCCCTTGAGCGCGTCGGTCCGGGTCTCAATCTGGTAGTTGTTGTTGCAGTGCAA
GTTCAACTTGGAGTACAACTGGGTGGTCAGCGCGCAGTTCAGCTGGGCGAAAATCGTGAGCGTAG
GCTTGGGCTTCGCAAACAGTCTCAAGAGGGTTCTGATCATGGCGC
Right flanking sequence: Indices 50301 -- 50800
TTGAGTGGCTGTGTGGATGAGTGGGTCAAACAGTCTCTGGTTGAACCTGGCAGGTGGGCGCTTAT
ATATCCCTGGCTCGTTGATCTAAACGATCGTACATATTTGACTCTAAAAGAGGGGTATTTTACTC
TGGAGGCCCCTCCATTTTGGGAGGAAAAAAGGTGTGCGTTCCCCTCACTTGCTAGTGGTTGTTGA
GACCTGGATATAACCGAAAAGAAAGGGTGATAGCGATAACGACCAGCAATAGGGGGGAAGGGGTA
GGGGGGAGAGAGGGGGGAGCGAGCTGGTGTTCTAGGTCGCTGGCTGTGTAGGGCGTAGACTTCTC
TAGGGGGTAGAGGCGGTGCGGGTGGCGATGGGCCGTCGTGTTGCCCCCGTGGACCGGGCTATACC
TGCGAAAAAAGTGGAAAGGAGGGGAAGCGGCCCAATGGGGCCACAAAATTTACAATGACCAGTTG
CCAGGTGGCCAGGAGGGGAGTGGCTGTCTACGGGGCTCGATAAGT
Found at i:50296 original size:21 final size:21
Alignment explanation
Indices: 50260--50299 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50250 GGTGGATGTA
* *
50260 GTGTGTGTGTGTGTGTGTGCT
1 GTGTGTGTGGGGGTGTGTGCT
50281 GTGTGTGTGGGGGTGTGTG
1 GTGTGTGTGGGGGTGTGTG
50300 TTTGAGTGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.03, G:0.55, T:0.42
Consensus pattern (21 bp):
GTGTGTGTGGGGGTGTGTGCT
Left flanking sequence: Indices 49760 -- 50259
GACCTAAAAAAGGTCGGCAAACTCGGCACAGTTGGGGTGCACCAAGTTGTGGTCAAACACCGGCG
ATTCGTGGTTCGCGGTGGCTCCAAAGTTCTGCATGCCACACCCGTTGTAGTTGGCCAAGATCCGG
TCAAACAGCTTGCAGTCCGTCGCCACCAACCGGTTCTGCCAGTCAATCACCAACGGCTGCTGGGC
CGCCTTGGTGAAGTCCAGGGCACACAACTCTTCGGATGCGCGCTTACCCACGAGAGCGTGGATAA
TCAGCTTGTTCTCGGGGTGGACGTCCACGCACTCGTCGAGCAAGAACTGGAGGTCGCGGCCCTTG
AGCGCGTCGGTCCGGGTCTCAATCTGGTAGTTGTTGTTGCAGTGCAAGTTCAACTTGGAGTACAA
CTGGGTGGTCAGCGCGCAGTTCAGCTGGGCGAAAATCGTGAGCGTAGGCTTGGGCTTCGCAAACA
GTCTCAAGAGGGTTCTGATCATGGCGCTGTGTGTGGGTGGATGTA
Right flanking sequence: Indices 50300 -- 50799
TTTGAGTGGCTGTGTGGATGAGTGGGTCAAACAGTCTCTGGTTGAACCTGGCAGGTGGGCGCTTA
TATATCCCTGGCTCGTTGATCTAAACGATCGTACATATTTGACTCTAAAAGAGGGGTATTTTACT
CTGGAGGCCCCTCCATTTTGGGAGGAAAAAAGGTGTGCGTTCCCCTCACTTGCTAGTGGTTGTTG
AGACCTGGATATAACCGAAAAGAAAGGGTGATAGCGATAACGACCAGCAATAGGGGGGAAGGGGT
AGGGGGGAGAGAGGGGGGAGCGAGCTGGTGTTCTAGGTCGCTGGCTGTGTAGGGCGTAGACTTCT
CTAGGGGGTAGAGGCGGTGCGGGTGGCGATGGGCCGTCGTGTTGCCCCCGTGGACCGGGCTATAC
CTGCGAAAAAAGTGGAAAGGAGGGGAAGCGGCCCAATGGGGCCACAAAATTTACAATGACCAGTT
GCCAGGTGGCCAGGAGGGGAGTGGCTGTCTACGGGGCTCGATAAG
Found at i:50315 original size:2 final size:2
Alignment explanation
Indices: 50242--50300 Score: 57
Period size: 2 Copynumber: 28.5 Consensus size: 2
50232 ATCATGGCGC
*
50242 TG TG TG TG GG TG -G ATG TAG TG TG TG TG TG TG TG TG TG CTG TG
1 TG TG TG TG TG TG TG -TG T-G TG TG TG TG TG TG TG TG TG -TG TG
* *
50284 TG TG TG GG GG TG TG TG T
1 TG TG TG TG TG TG TG TG T
50301 TTGAGTGGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
1 1 0.02
2 43 0.88
3 5 0.10
ACGTcount: A:0.03, C:0.02, G:0.53, T:0.42
Consensus pattern (2 bp):
TG
Left flanking sequence: Indices 49742 -- 50241
ACCTTCCCAATCCCAATTGACCTAAAAAAGGTCGGCAAACTCGGCACAGTTGGGGTGCACCAAGT
TGTGGTCAAACACCGGCGATTCGTGGTTCGCGGTGGCTCCAAAGTTCTGCATGCCACACCCGTTG
TAGTTGGCCAAGATCCGGTCAAACAGCTTGCAGTCCGTCGCCACCAACCGGTTCTGCCAGTCAAT
CACCAACGGCTGCTGGGCCGCCTTGGTGAAGTCCAGGGCACACAACTCTTCGGATGCGCGCTTAC
CCACGAGAGCGTGGATAATCAGCTTGTTCTCGGGGTGGACGTCCACGCACTCGTCGAGCAAGAAC
TGGAGGTCGCGGCCCTTGAGCGCGTCGGTCCGGGTCTCAATCTGGTAGTTGTTGTTGCAGTGCAA
GTTCAACTTGGAGTACAACTGGGTGGTCAGCGCGCAGTTCAGCTGGGCGAAAATCGTGAGCGTAG
GCTTGGGCTTCGCAAACAGTCTCAAGAGGGTTCTGATCATGGCGC
Right flanking sequence: Indices 50301 -- 50800
TTGAGTGGCTGTGTGGATGAGTGGGTCAAACAGTCTCTGGTTGAACCTGGCAGGTGGGCGCTTAT
ATATCCCTGGCTCGTTGATCTAAACGATCGTACATATTTGACTCTAAAAGAGGGGTATTTTACTC
TGGAGGCCCCTCCATTTTGGGAGGAAAAAAGGTGTGCGTTCCCCTCACTTGCTAGTGGTTGTTGA
GACCTGGATATAACCGAAAAGAAAGGGTGATAGCGATAACGACCAGCAATAGGGGGGAAGGGGTA
GGGGGGAGAGAGGGGGGAGCGAGCTGGTGTTCTAGGTCGCTGGCTGTGTAGGGCGTAGACTTCTC
TAGGGGGTAGAGGCGGTGCGGGTGGCGATGGGCCGTCGTGTTGCCCCCGTGGACCGGGCTATACC
TGCGAAAAAAGTGGAAAGGAGGGGAAGCGGCCCAATGGGGCCACAAAATTTACAATGACCAGTTG
CCAGGTGGCCAGGAGGGGAGTGGCTGTCTACGGGGCTCGATAAGT
Found at i:51912 original size:11 final size:11
Alignment explanation
Indices: 51896--51921 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51886 GAGCCAGACA
51896 CGAGGCAGTAG
1 CGAGGCAGTAG
51907 CGAGGCAGTAG
1 CGAGGCAGTAG
51918 CGAG
1 CGAG
51922 AGACGCCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.19, G:0.46, T:0.08
Consensus pattern (11 bp):
CGAGGCAGTAG
Left flanking sequence: Indices 51396 -- 51895
CCCCCGGAGTGCACGGGTAACCGGAGCCAGAGTCGAAACGGTTGGCACAGACGAAGGCGAACACG
AGTGGAAGAGTCTTCGGGTGGTCAACGTTAAGGTCGGGTGCGATTGAGGTTGGCGGATTAGTTGG
CGGATTATTCCGGTGCACCCTAGCACAATTCTCCCAGTGGTCCACGACAAAGTCCGAGACATGGC
ACAATCGCGGGTCGACGGAAGCGAGCGAACTGTCGTGATGAGATGCACCGGGGAGGTCAGTAACC
AGGTAGTGTGTATTGTTCGATTTTTGAAGCAACGTAGGTGTCCTTTGTGGGCCCCGGTAACCCCA
GCGACCACGGACGAAGACAATGGCCCAGACGATCTCACATGGCTAGCATCTTCGCAGGCGTCTAC
GATTTTGTGGTCTGGACAACGAGGCGATGATCAGCCCACGGGTGCAGAGCAACGCGTGGGTGGCT
GTGGAGCAACTCCGGTTATGGGAGGGCGAGGCGATGAGCCAGACA
Right flanking sequence: Indices 51922 -- 52421
AGACGCCATAGCACCGGGTGGTGGCCTAAGAAAATTCTAGAAGGGTCCACGTCGCGACTAAAGCC
TAATTTCGAGGCTTCGTCGGGCTGACGGGTTGGGTGGCTCGGCCTAAAGATAGTCTTGTGAACTA
CTGGAAGGGGCAGTAAACAGCGGGGAATTGTAAGCAACAATTGGGCTTGTGTCGATTACATGGGC
TTAGGCCCAGTGTTGTTGGCTTAGGCTGGGCTTACCAAAAATAGGCTTAGACTAGTTACCACAGC
TACCACAGATTTCGTAGGTTATGCCGGCAACTGCAGCCCCTGCAGCAACCCACGTCCCCTGGAAT
CGTTGAATTACGATAGTGGGCAGTGTGGTGTACTCGTGGCACCCACACTCTTCGTATTACCGGGG
GGGTTGCACTCGTGGCACCACACTCACCGCATTATGCAGTGGTTGCTCTCGAAATATCCACCTAC
TCTACTCATTCAATCTTTATAATACATTTACTGTAAAATCAAACT
Found at i:55300 original size:12 final size:12
Alignment explanation
Indices: 55283--55307 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55273 ATTAGCAGAT
55283 CGTCTTCGCAGC
1 CGTCTTCGCAGC
55295 CGTCTTCGCAGC
1 CGTCTTCGCAGC
55307 C
1 C
55308 AACCTAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.44, G:0.24, T:0.24
Consensus pattern (12 bp):
CGTCTTCGCAGC
Left flanking sequence: Indices 54783 -- 55282
GGCCAAGATAGTCGGTGGCCTCGGGCAAGAAGAGCACCTGGGCCTTGGCCTGGACCGCCTGGTTG
ATCAACTTGCGCGCCACCCGCGCGTTGGTAAAGGGATTCAGCAGCGAGCAGAGCTGGCCAACGGC
TATCTTCATAGTGGTAGGGAGAGAATTAAACGCGACAGCCGCATATTTAAGACGGGCTCGAAACA
GGGCTACAATACAATGAGTCAGCGGGAAAAAAATCGGGGTGACTCATGGGGGGGACTAAGCCAGG
GTGGAGCGGTTTGGCAATTTTTACCGTGGGCTCGTTGGTGGTTCTCGTTCTGGCTGGACCCTTTT
TCTGCGAATTACCTGTCGGTTATTTTTTAGGCGAGAAAAATAGGGCGGTCAGGTGTATAACCACG
GGGTGGGGAACTGACAGTCTTTAGATGAGTGATGGGGCCCGCTACGATCTACGGTGATTAGGCTT
TTGGGTAGATCAGCAGTAAACTTAAACTACATCTAATTAGCAGAT
Right flanking sequence: Indices 55308 -- 55807
AACCTAGTTTAAGGTTTACCCGTCGCCCGTTGTGGGGTCGGAGCGAGCCTGGCATGCATCAGTTT
TGTGCTTGGACTAAATTCGATGCAACCTCGAAACTGCCATATCTGGAGCGGTAGTGCTGACACAA
AGCAGCCGCTCTTGGCGCACGAATACGAGACGGGAGCAAGGATAAAAATAGCTGTTGCCTCTAAT
AGGTAGAAAAGGAGCCCACCCGCGGTTTGTGTAGCGGGCCGCTTGGCTGGCTGGCGGGTGGGGTG
ATTTCCATTAGTAGCGCATCCCCGACAGTGACCAGGTGTCTGGAAAGTGGTCTTATGCTGTGGCC
CGGGACCGCCAGACGGCCCTGGCATGCCAGGTTGGGGCCCTAATACGAGGGAATGGGAGGGAATG
GCGTGAGGTGTCAGTGGGTGTATGAGGTGGTAGTGGGTGTATTAGCTACATAGCGGGACCGGCCC
TAGAGGAGATGGAGCGTGGGGGGGTTGGATAGCGGGTCAGCGAGT
Found at i:55725 original size:19 final size:19
Alignment explanation
Indices: 55701--55739 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
55691 GGGAATGGCG
55701 TGAGGT-GTCAGTGGGTGTA
1 TGAGGTGGT-AGTGGGTGTA
55720 TGAGGTGGTAGTGGGTGTA
1 TGAGGTGGTAGTGGGTGTA
55739 T
1 T
55740 TAGCTACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.15, C:0.03, G:0.49, T:0.33
Consensus pattern (19 bp):
TGAGGTGGTAGTGGGTGTA
Left flanking sequence: Indices 55201 -- 55700
GTGATGGGGCCCGCTACGATCTACGGTGATTAGGCTTTTGGGTAGATCAGCAGTAAACTTAAACT
ACATCTAATTAGCAGATCGTCTTCGCAGCCGTCTTCGCAGCCAACCTAGTTTAAGGTTTACCCGT
CGCCCGTTGTGGGGTCGGAGCGAGCCTGGCATGCATCAGTTTTGTGCTTGGACTAAATTCGATGC
AACCTCGAAACTGCCATATCTGGAGCGGTAGTGCTGACACAAAGCAGCCGCTCTTGGCGCACGAA
TACGAGACGGGAGCAAGGATAAAAATAGCTGTTGCCTCTAATAGGTAGAAAAGGAGCCCACCCGC
GGTTTGTGTAGCGGGCCGCTTGGCTGGCTGGCGGGTGGGGTGATTTCCATTAGTAGCGCATCCCC
GACAGTGACCAGGTGTCTGGAAAGTGGTCTTATGCTGTGGCCCGGGACCGCCAGACGGCCCTGGC
ATGCCAGGTTGGGGCCCTAATACGAGGGAATGGGAGGGAATGGCG
Right flanking sequence: Indices 55740 -- 56239
TAGCTACATAGCGGGACCGGCCCTAGAGGAGATGGAGCGTGGGGGGGTTGGATAGCGGGTCAGCG
AGTAACCCCGACTCTTCGGCCACGGGCTCGGGCACCGGGGAGGGCCGGTGGAAGAGCCAGTGGAG
CACCCGTTGCCCGAGACGAAGCACCGTCCACGCGCCCCATTTGACGAGCCTGGAGGCAACCACCG
TGGCCAAAGCGACAAACGAGAGATACAACACCAACCCGAGCCATTGGCGCTGGTGCCAGAACGCC
GCAACGTCCCGAACGCCCGTATATAGCCAAGGCACGTCGAACCCGTGCTTTTTCCAGAGCCTCAC
TGCGGGGATCTGGGCCACCCAGTCGCGGGCCTGGTCCGCGGTCATCGTGCTCACCCGGTCCACCA
CGCTTTTGAGCGGGGACGCGGGGTACGCGGTGGTGGTGGGGGTGGCTAAAATCGTCTTGGTGTGC
TCAATCACCTCGGTGTGGGTGGGCACCGACACCACTGTAGTGACG
Found at i:56815 original size:17 final size:17
Alignment explanation
Indices: 56789--56821 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
56779 CGCTGGCCTC
*
56789 ATTCGGTGGCCTCTACT
1 ATTCGCTGGCCTCTACT
56806 ATTCGCTGGCCTCTAC
1 ATTCGCTGGCCTCTAC
56822 GTGGTCTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.33, G:0.21, T:0.33
Consensus pattern (17 bp):
ATTCGCTGGCCTCTACT
Left flanking sequence: Indices 56289 -- 56788
GGATCGCCCCCGCAAGTGCCATCCACGCGAGCTGCGGGCCCCGGATCACCACCACCAGGCCCGAG
AAGTGTGGTGGCAGTGCCTGGCCGGCCTGGTTAGCTATCGCCGCTGGGAGCACGCTGGCTAGCGC
ACCAGCGGGCGCCATGGGGTCTGTCATTTACTAGACGTATCTACAAACGGTCGTTGCACATGATT
TGGCCACGCACGTGAAGAACGGGTGGGTTTTTCAGTGTGCTGCAACAGGGTCCTAAGCGAGGCCA
ACGAACGTCGGTTACGAGCGTCGGTTACGCGAGTGGCCTTTCGGTGGAGGCCGTGGGACAGCGAG
AAGGTAGGCGGTAGGATTAGCCGGAGGGGAGATCCCCGGCCACGGCGGGTCCCGGCGTTAGTCCG
CAGGGATGCGATCTGGCGTACTAATGCAGTGAAGGCGATCTATGAGGCCATGTAGAAGAATTAAG
GTGAAGGGCTGCCTTGATGGGCGTCTGGCACGGTTCGCTGGCCTC
Right flanking sequence: Indices 56822 -- 57321
GTGGTCTTGGCACTCGTATGGTCCAACTACCAACTAAACTGAATTTCGCGTCTCATCGTAGTAAA
GTACAGCCTAGTTCGCAGCCTCCGCAGCCTGGTTGGGCACCAGCCATCCTCGGCGATCACGATAA
ACACCGAGACCCCGGTAGCCGCCCAGCATGAACACATACCAGCGATACGCCCGGCCAACACAATG
TAATTACGCTATTGTGCGGTGGCGGCGTCGAGCGTCCACTCAAAAAGACCCAATGGTCAGAAGAC
TAAAAATAAAAAATAAAAACAAAAGTTTAAGTAGACCTAGCTAAGAATAGTAGCCTAGTGGCTCT
AAACCACGTAAATCACACCAACCCCACTCCCTACAATCAATTGGTCCTCCAGACTTATTACCCAC
ACCCTTACCGCACCACTACCACACCACCACGCCTCCTGCGTCCCACGTTCTTTGTCCGCCTACCC
CTATACCCTGCGTTTGTCCCCCCTGTGGCCCGAGTGACTCTAACC
Found at i:57748 original size:11 final size:11
Alignment explanation
Indices: 57732--57778 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
57722 ACTCACAATT
*
57732 CTCCACTGCCC
1 CTCCACTGCTC
*
57743 CTCCACTACTC
1 CTCCACTGCTC
*
57754 TTCCACTGCTC
1 CTCCACTGCTC
*
57765 CTCCAATGCTC
1 CTCCACTGCTC
57776 CTC
1 CTC
57779 TCTTTGTCTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.13, C:0.53, G:0.06, T:0.28
Consensus pattern (11 bp):
CTCCACTGCTC
Left flanking sequence: Indices 57232 -- 57731
ACACCACCACGCCTCCTGCGTCCCACGTTCTTTGTCCGCCTACCCCTATACCCTGCGTTTGTCCC
CCCTGTGGCCCGAGTGACTCTAACCGCAGACACCGTGCGTGAAACGTGCAGCCAGTACGGCTGAA
GAATAGCTAGCGAGATCAGAGCGATCGCTGGTCGTGTGCACTTGCACCGCTCACTGCTAGCTCCA
ACACCGCTCTACGCTCTTTCCCAGCCACCACCAGCGCTCCAGGTTCCACCAACAATGTCGTGGCC
CAATGGCGCGGTCAATGGTGCCGGCCATTTTAGCGCTGCTACGTCGGCATTTGCAGGGAAGGAAT
TTTCGTGGAATGATGGCGCACAAAGCCTCCCACCCGACAACCAGCGGCATGGCGTGTAGTAGCGT
GTAGTCCAGGGTTCACTAACGCTACAGATACGCTCTAACTCCACCCACACACTCTCTCTCATACA
CACTCACAAATACAATTACACATACACATCACTACACTCACAATT
Right flanking sequence: Indices 57779 -- 58278
TCTTTGTCTCCCTCCCTCTCTATCCTCCTCTCCTCCATCTCCCAACCCCCCCCATTTCCTCCTCT
CCTCCCTCCCGATCTCGTCTAACCACTCTGTTTACATTCCGCCCCGATCCGGCCTAATTACCTGC
ACGATCCCGAGTCCCGTTGCGAGCCCTGGGCAAAACACCCACCGCCAGCCAGCCCTCTATTTACC
CCGACACCCGCAGCGCCCCCAGGGGCTGCAAACGTCGCGTGGCCCCGGCAGCGTTTTTCTGTTTG
GGGCGCCGCTCTACGTCGTTCTCCCGCGCGTCGCTGCTAAAAACTAGGTTTATATATGTACCGCA
GCCCGGAATGATCGCCCCAACCCCCAGTGCCCGCCCGTGTGACCGTGCCCGAGCCTCGCAACCGT
CGCTGGTGTATCTGAGTCTCGACACCCTCCACCTCTTCAGCCCGCTCCCCACGCCCCCGCCGTCG
CTCCCTCCCCCCGACGCCAAGCTGACCCGCCCCTCCGAGCGCCCC
Found at i:58302 original size:21 final size:21
Alignment explanation
Indices: 58276--58330 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
58266 CTCCGAGCGC
58276 CCCCCGTCGCACCGGCCCCCG
1 CCCCCGTCGCACCGGCCCCCG
58297 CCCCCGTCGCACCGGCCCCCG
1 CCCCCGTCGCACCGGCCCCCG
* *
58318 ACCCTGTCGCACC
1 CCCCCGTCGCACC
58331 TCCCCCACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.07, C:0.64, G:0.22, T:0.07
Consensus pattern (21 bp):
CCCCCGTCGCACCGGCCCCCG
Left flanking sequence: Indices 57776 -- 58275
CTCTCTTTGTCTCCCTCCCTCTCTATCCTCCTCTCCTCCATCTCCCAACCCCCCCCATTTCCTCC
TCTCCTCCCTCCCGATCTCGTCTAACCACTCTGTTTACATTCCGCCCCGATCCGGCCTAATTACC
TGCACGATCCCGAGTCCCGTTGCGAGCCCTGGGCAAAACACCCACCGCCAGCCAGCCCTCTATTT
ACCCCGACACCCGCAGCGCCCCCAGGGGCTGCAAACGTCGCGTGGCCCCGGCAGCGTTTTTCTGT
TTGGGGCGCCGCTCTACGTCGTTCTCCCGCGCGTCGCTGCTAAAAACTAGGTTTATATATGTACC
GCAGCCCGGAATGATCGCCCCAACCCCCAGTGCCCGCCCGTGTGACCGTGCCCGAGCCTCGCAAC
CGTCGCTGGTGTATCTGAGTCTCGACACCCTCCACCTCTTCAGCCCGCTCCCCACGCCCCCGCCG
TCGCTCCCTCCCCCCGACGCCAAGCTGACCCGCCCCTCCGAGCGC
Right flanking sequence: Indices 58331 -- 58830
TCCCCCACTCGCCTCCACGCCGCCCGCAAATGGCTGGTGCCCGGACCCCGTTCCTGCAGCCGGGC
CCCGACGAGTTTAATCAGGTGCCCAAGCGGTTCTCGCAGTTTATAATCGACCAGCAGAACCCCTA
CACCGCCCAGAAGCTCGATAACCTTCTGTTGACGCTGCCGCTGTTTGCCCTGGACCTCGAACTCC
TGGAAATGGCCTACACCCCCTACACCGCCGGCGCCCTCGACCCCGGGTCCACCTCGCCGGCGCGC
GCCCCCTACTCGCCACACCACCCCCACCCCGCCCCGGCGCCCCACCCGCCCCGGGCGCTGCGCGA
CATCCTGGACCTGATGGAGTCCCAGGCCACCATCTTCCTGACCCGCGGTGGCCAGGCCGCCCCCA
CCCACCGCCGCCGTCTCTTCCGCCGCCCCACCCGCACGGTGCTGGTGGTGGACCGCCTGCTGGTG
GCGCTGCTGCGGTTGTCCCGCCGGGGCGCCATCCGCTTCAAGCGC
Found at i:59663 original size:15 final size:15
Alignment explanation
Indices: 59630--59680 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
59620 GAGGAGGACA
*
59630 AGAA-GAAGAGAGAGA
1 AGAAGGAAGAGA-AGG
59645 AGAAGGAAGAGAAGG
1 AGAAGGAAGAGAAGG
*
59660 AGAAGG-AGGGAAAGG
1 AGAAGGAAGAG-AAGG
59675 AGAAGG
1 AGAAGG
59681 GTGAAAAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 3 0.09
15 22 0.69
16 7 0.22
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (15 bp):
AGAAGGAAGAGAAGG
Left flanking sequence: Indices 59130 -- 59629
CGCCGGTGCTGGTGCCGGTGCGGGTGCCGACACCCCCGGCGCGGGGGCGATGCCCGGTGCCGGCG
CCGGGGCGCCCCTCGAGGCCGAGGGCCGCATGCGCCACCTCTCCAACTACATCGACCAGCAACAG
GTGTCGTACTCCAAGTTGCGGGCCCGCGACCGCGAGTTCGACCGCAAGCAGTTCCGCGAGATGCT
GAGCGACCACCTGGCACAGGTGCTGGTGCCCGAGCCCGCGCGGTCGGCGCACGCGCACCACAAGC
CCATCAAGCCCCCGGTGGTGCTGGGGTTTGTCGCCAAGGAGCCCCCGAAGCCGAAGGGCAGCGGG
CGCAGTCTTGAGGAGCCCCGCACGTTGGCGCCGAAGAAGCAGCGCACGCTGCCCCGGGTGCCCCA
AAAGCCGGTGGCACCCAGTGCTGGCGAAACACCCAAGGAGGTGCTGTTGCACCTCACGCGCGACG
GCACCACCGTGCACAAGCCGCGAATGAGTGAGAAGGAGGAGGACA
Right flanking sequence: Indices 59681 -- 60180
GTGAAAAGATGGGCAAGGCCAAGGGTGTTGCGGCTGGTGGTGTCGCTGGCAGTGCCATTGCCGCG
CTCGCGCGAGCCTACCGCGACCCGTCCGGTGGTGCTGCCGCTGGCCCTGGGGCTTCACGTGATGT
TCCCACTGGTGGTCAAGGCTCCGCCCCGGGTCCTCAAGGGACCTCCCTGGGTCGTTCCTTCAAGG
GTCCCCAAGGTTCCTCCAAGGGTCCCCAGACCTCCTCCCACGCGACCTCCTCCCACGCGACCTCC
TCCCACCAGGCAACCTCCCGCACCCGCACCTCCCTCCCCCACTCCGACCCGCCGTCGCCCCTCGC
CCAGCTCGAGACCCAGGCCGAGGACGGTCCCGGGCTCCACCCGCTCCTCGCCGAGGAAATCAACG
TCGAGCTGGCCCAGATGGTCGACTTGTGGCGCGCGTACCTCCAGGCAGTGGTCACCAACCGCATC
CGCCTCCGCCAGGAGGTCAACGAGTTCCGAGACTATTTGGAGTCA
Found at i:59888 original size:21 final size:21
Alignment explanation
Indices: 59864--59903 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
59854 TCCCTGGGTC
*
59864 GTTCCTTCAAGGGTCCCCAAG
1 GTTCCTCCAAGGGTCCCCAAG
59885 GTTCCTCCAAGGGTCCCCA
1 GTTCCTCCAAGGGTCCCCA
59904 GACCTCCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (21 bp):
GTTCCTCCAAGGGTCCCCAAG
Left flanking sequence: Indices 59364 -- 59863
GCGGTCGGCGCACGCGCACCACAAGCCCATCAAGCCCCCGGTGGTGCTGGGGTTTGTCGCCAAGG
AGCCCCCGAAGCCGAAGGGCAGCGGGCGCAGTCTTGAGGAGCCCCGCACGTTGGCGCCGAAGAAG
CAGCGCACGCTGCCCCGGGTGCCCCAAAAGCCGGTGGCACCCAGTGCTGGCGAAACACCCAAGGA
GGTGCTGTTGCACCTCACGCGCGACGGCACCACCGTGCACAAGCCGCGAATGAGTGAGAAGGAGG
AGGACAAGAAGAAGAGAGAGAAGAAGGAAGAGAAGGAGAAGGAGGGAAAGGAGAAGGGTGAAAAG
ATGGGCAAGGCCAAGGGTGTTGCGGCTGGTGGTGTCGCTGGCAGTGCCATTGCCGCGCTCGCGCG
AGCCTACCGCGACCCGTCCGGTGGTGCTGCCGCTGGCCCTGGGGCTTCACGTGATGTTCCCACTG
GTGGTCAAGGCTCCGCCCCGGGTCCTCAAGGGACCTCCCTGGGTC
Right flanking sequence: Indices 59904 -- 60403
GACCTCCTCCCACGCGACCTCCTCCCACGCGACCTCCTCCCACCAGGCAACCTCCCGCACCCGCA
CCTCCCTCCCCCACTCCGACCCGCCGTCGCCCCTCGCCCAGCTCGAGACCCAGGCCGAGGACGGT
CCCGGGCTCCACCCGCTCCTCGCCGAGGAAATCAACGTCGAGCTGGCCCAGATGGTCGACTTGTG
GCGCGCGTACCTCCAGGCAGTGGTCACCAACCGCATCCGCCTCCGCCAGGAGGTCAACGAGTTCC
GAGACTATTTGGAGTCACGAGCCCTGGCGCCCCAGTTCGACGAGTTGGCGTCGTCCCGCCAGCTG
CTGGCAAAGCCCGACGTGATCCTGGTGTACCTGGCAGAGCTGACGGCGACGTTGGACTCGCAGCT
GAAGCAGTTTGCCGCCCAGCACAACCGCCGGTCGATGCTCGGGGAGATGCTCGAGTACTCGCTGG
ACGACGAGGGCCTGGTGGTGCTGGACGCGCCGCTGGCGGCCACGG
Found at i:59924 original size:15 final size:15
Alignment explanation
Indices: 59904--59946 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
59894 AGGGTCCCCA
59904 GACCTCCTCCCACGC
1 GACCTCCTCCCACGC
59919 GACCTCCTCCCACGC
1 GACCTCCTCCCACGC
59934 GACCTCCTCCCAC
1 GACCTCCTCCCAC
59947 CAGGCAACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.14, C:0.60, G:0.12, T:0.14
Consensus pattern (15 bp):
GACCTCCTCCCACGC
Left flanking sequence: Indices 59404 -- 59903
GTGGTGCTGGGGTTTGTCGCCAAGGAGCCCCCGAAGCCGAAGGGCAGCGGGCGCAGTCTTGAGGA
GCCCCGCACGTTGGCGCCGAAGAAGCAGCGCACGCTGCCCCGGGTGCCCCAAAAGCCGGTGGCAC
CCAGTGCTGGCGAAACACCCAAGGAGGTGCTGTTGCACCTCACGCGCGACGGCACCACCGTGCAC
AAGCCGCGAATGAGTGAGAAGGAGGAGGACAAGAAGAAGAGAGAGAAGAAGGAAGAGAAGGAGAA
GGAGGGAAAGGAGAAGGGTGAAAAGATGGGCAAGGCCAAGGGTGTTGCGGCTGGTGGTGTCGCTG
GCAGTGCCATTGCCGCGCTCGCGCGAGCCTACCGCGACCCGTCCGGTGGTGCTGCCGCTGGCCCT
GGGGCTTCACGTGATGTTCCCACTGGTGGTCAAGGCTCCGCCCCGGGTCCTCAAGGGACCTCCCT
GGGTCGTTCCTTCAAGGGTCCCCAAGGTTCCTCCAAGGGTCCCCA
Right flanking sequence: Indices 59947 -- 60446
CAGGCAACCTCCCGCACCCGCACCTCCCTCCCCCACTCCGACCCGCCGTCGCCCCTCGCCCAGCT
CGAGACCCAGGCCGAGGACGGTCCCGGGCTCCACCCGCTCCTCGCCGAGGAAATCAACGTCGAGC
TGGCCCAGATGGTCGACTTGTGGCGCGCGTACCTCCAGGCAGTGGTCACCAACCGCATCCGCCTC
CGCCAGGAGGTCAACGAGTTCCGAGACTATTTGGAGTCACGAGCCCTGGCGCCCCAGTTCGACGA
GTTGGCGTCGTCCCGCCAGCTGCTGGCAAAGCCCGACGTGATCCTGGTGTACCTGGCAGAGCTGA
CGGCGACGTTGGACTCGCAGCTGAAGCAGTTTGCCGCCCAGCACAACCGCCGGTCGATGCTCGGG
GAGATGCTCGAGTACTCGCTGGACGACGAGGGCCTGGTGGTGCTGGACGCGCCGCTGGCGGCCAC
GGAGCAGGCCGGGGGCCTCAGTCGGAACTACGGCACCGTGGTGGT
Found at i:62290 original size:10 final size:10
Alignment explanation
Indices: 62274--62431 Score: 162
Period size: 10 Copynumber: 15.8 Consensus size: 10
62264 CACTCAATTG
62274 CACCCATTAC
1 CACCCATTAC
* **
62284 CATCCATTTT
1 CACCCATTAC
62294 CACCCATT-C
1 CACCCATTAC
* *
62303 TAACCCATTAT
1 -CACCCATTAC
*
62314 CACCCATTAT
1 CACCCATTAC
*
62324 CACCCATTAT
1 CACCCATTAC
*
62334 CACCCATTAT
1 CACCCATTAC
62344 CACCCATTAC
1 CACCCATTAC
62354 CACCCATTAC
1 CACCCATTAC
62364 CACCCATTAC
1 CACCCATTAC
62374 CACCCATTAC
1 CACCCATTAC
62384 CA-CCATTTAC
1 CACCCA-TTAC
**
62394 CACCCATTTT
1 CACCCATTAC
62404 CACCCATT-C
1 CACCCATTAC
62413 CTACCCATT-C
1 C-ACCCATTAC
62423 CAACCCATT
1 C-ACCCATT
62432 CCAATCCTTT
Statistics
Matches: 130, Mismatches: 13, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
9 4 0.03
10 123 0.95
11 3 0.02
ACGTcount: A:0.28, C:0.44, G:0.00, T:0.28
Consensus pattern (10 bp):
CACCCATTAC
Left flanking sequence: Indices 61774 -- 62273
TTTGGCGATCTTTCTGGTGGTTGTGAGGCTATTTTTCGTGTTTGGCTATTTCGGTTGGCTAATTT
GAATTCGATTCGAGAGCGTGGTTGAGGTGGTTTTTACCGTGTGGTTCAAAATCCCCCTTTCACCA
CAAAAATTGTCAGTTTTGGTTAGATTCCATTAGTTGTGAAATATCGTGGCCAAATATTGCCTCAA
ATCAATGGTTTGGTTGTCTCAGCATTTTGAACCAGTCCAGGCTTTAGGACTACCGAAGGCCGGAA
AAAACCACCAAATGCATCATAAACCCGGGGAGAAAGGCACTCAAACCGATTGACCACCCAGAATC
CGGTTCTTCGGTCCTCAAAACAAGTTTTACACCCACTTTCACCGGGTCAAACTACTAAAAACTGG
CCTTTCTCGGCCCTAGACCATGCTCAAACCACCATTAGCCACTTTTGGACCCCGAAACACCACTT
TCAACCCGAAGAAAACACACAATTGGATTCAATTGCACTCAATTG
Right flanking sequence: Indices 62432 -- 62931
CCAATCCTTTTCACCCCTTTCCCACCCTTTCCCACCCTTCCCCCCCCCACCTCCACTCCACCCCA
CCCACCCACCTTCAATACTAACCTCTAGTGCTCGACCAAGGGACGGGTTTCGTCAAGATCGGCCG
TGCCGGCACAAACTTCCCCGACCACACGTTCCCCTCGATCGTGGGCCGCCCCATCTTGCGGGCAG
AAGAACGCAGCACCCTCGTGCCCCCGGACGTGGAGATCAAGGACATCATGTGCGGCGACGAGGCC
GCCCAGGTGCGGTCGTTGTTGCAGGTGTCGTACCCGATGGAGAACGGCATCATCAAGAACTGGGA
GGACATGGAGCACTTGTGGGACTACCTGTTCTACGAGCGGTTGAAACAGCCCACCCAGGGCCAGA
AGGTGCTCTTGACGGAGCCCCCGATGAACCCGCTCGCCAACCGCGAGGAAATGGTGCGGATCATG
TTCGAGAAGTACCAGTTTGACGGTGTCTACGTGGCCATCCAGGCG
Found at i:62432 original size:10 final size:10
Alignment explanation
Indices: 62405--62435 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
62395 ACCCATTTTC
*
62405 ACCCATTCCT
1 ACCCATTCCA
62415 ACCCATTCCA
1 ACCCATTCCA
62425 ACCCATTCCA
1 ACCCATTCCA
62435 A
1 A
62436 TCCTTTTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.29, C:0.48, G:0.00, T:0.23
Consensus pattern (10 bp):
ACCCATTCCA
Left flanking sequence: Indices 61905 -- 62404
AAAAATTGTCAGTTTTGGTTAGATTCCATTAGTTGTGAAATATCGTGGCCAAATATTGCCTCAAA
TCAATGGTTTGGTTGTCTCAGCATTTTGAACCAGTCCAGGCTTTAGGACTACCGAAGGCCGGAAA
AAACCACCAAATGCATCATAAACCCGGGGAGAAAGGCACTCAAACCGATTGACCACCCAGAATCC
GGTTCTTCGGTCCTCAAAACAAGTTTTACACCCACTTTCACCGGGTCAAACTACTAAAAACTGGC
CTTTCTCGGCCCTAGACCATGCTCAAACCACCATTAGCCACTTTTGGACCCCGAAACACCACTTT
CAACCCGAAGAAAACACACAATTGGATTCAATTGCACTCAATTGCACCCATTACCATCCATTTTC
ACCCATTCTAACCCATTATCACCCATTATCACCCATTATCACCCATTATCACCCATTACCACCCA
TTACCACCCATTACCACCCATTACCACCATTTACCACCCATTTTC
Right flanking sequence: Indices 62436 -- 62935
TCCTTTTCACCCCTTTCCCACCCTTTCCCACCCTTCCCCCCCCCACCTCCACTCCACCCCACCCA
CCCACCTTCAATACTAACCTCTAGTGCTCGACCAAGGGACGGGTTTCGTCAAGATCGGCCGTGCC
GGCACAAACTTCCCCGACCACACGTTCCCCTCGATCGTGGGCCGCCCCATCTTGCGGGCAGAAGA
ACGCAGCACCCTCGTGCCCCCGGACGTGGAGATCAAGGACATCATGTGCGGCGACGAGGCCGCCC
AGGTGCGGTCGTTGTTGCAGGTGTCGTACCCGATGGAGAACGGCATCATCAAGAACTGGGAGGAC
ATGGAGCACTTGTGGGACTACCTGTTCTACGAGCGGTTGAAACAGCCCACCCAGGGCCAGAAGGT
GCTCTTGACGGAGCCCCCGATGAACCCGCTCGCCAACCGCGAGGAAATGGTGCGGATCATGTTCG
AGAAGTACCAGTTTGACGGTGTCTACGTGGCCATCCAGGCGGTGT
Found at i:63757 original size:10 final size:10
Alignment explanation
Indices: 63720--63757 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
63710 GGTTAGTGGG
63720 TAACTGGGTT
1 TAACTGGGTT
*
63730 TAAATGGGTT
1 TAACTGGGTT
63740 TAAC-GGGTT
1 TAACTGGGTT
*
63749 TAGCTGGGT
1 TAACTGGGT
63758 AAGCTCTGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.21, C:0.08, G:0.34, T:0.37
Consensus pattern (10 bp):
TAACTGGGTT
Left flanking sequence: Indices 63220 -- 63719
ACCCTCGTCGAGCTGTACGAGTTGCCCGACGGGCGCACCATCCGCGTGGGCTCCGAGCGGTTCAA
GGCCCCCGAGTGTCTCTTCCAGCCCCACTTGGTGGGCAAGGAGCTGCCCGGCGTGGGCGAGATGT
TATTCAACACGCTCCAGGCGTGTCCCGTGGACACCCGGTCCGAGTTGTTGCGGGGCATTGTCCTC
TCTGGCGGGTCGCTGATGTACCCCGGGTTGCCTCTGCGGCTCGAGAAGGAGCTCAAGCAGTTGTA
CTTGACCCGGGTGCTTGGCGGAGACGGCGAGCGGTTGAAGAACTTCAAGGTGCGCATCGAGGACC
CCCCGAGACGCCGGCACATGGTGTTCATTGGCGGAGCGGTGTTGGCCAACATCATGAAGGACAAG
GAGCACTTGTGGCTCACTCGCCAGGAGTGGGAGGAGCAGGGCCCGCGGGCGTTGCAGAAGTTCCA
GCAGCGGTAGTTATGAATAAATGAAATAGGAAGAAGGTTAGTGGG
Right flanking sequence: Indices 63758 -- 64257
AAGCTCTGGGTTTAAGCTCTGGGTTTAAGCCCACTGGGTGTTTGATGATGACCAGTTTACGAGAA
CGGGTACCTTTTGTTAGGGCGATTTATAGCTTAAGCGTTTAGCTAGGTAGGGTGTGCTCAGTGGT
TCGCTGGGGGGATGAGGTAATAGCCCCAAGTGTTGCGTTCAGGTGTTTCTTCGTTTAAGCTCACT
GGGTTTGATTGCGATTGTGACCAGCCAACGAGAACGGGTACTTTACTACGAATAGGGTGATTTCT
AGCTCAATTGTGTCTAGAGAGATAGTGTAGTGAGCTCAGATAGGGCAGTGAGCTCAGATAGGGTA
GTGTGCTCAGATTGGGTAGTGTGCAAAGATAAGGTAGTGAGCTTATTACTGAGCTACGGCTCCCG
AGTATTGCGTTCACGAAAGGAAAAAGGGAAAAAGGTGGAGGTGGAAAGGGGAGAGAAGAAAGAAG
GTCATGAAGTTAAGCATAGTGGGGAGTAATAAGAGTATGGTGTGA
Found at i:63775 original size:13 final size:13
Alignment explanation
Indices: 63757--63787 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
63747 TTTAGCTGGG
63757 TAAGCTCTGGGTT
1 TAAGCTCTGGGTT
63770 TAAGCTCTGGGTT
1 TAAGCTCTGGGTT
63783 TAAGC
1 TAAGC
63788 CCACTGGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.29, T:0.35
Consensus pattern (13 bp):
TAAGCTCTGGGTT
Left flanking sequence: Indices 63257 -- 63756
CCATCCGCGTGGGCTCCGAGCGGTTCAAGGCCCCCGAGTGTCTCTTCCAGCCCCACTTGGTGGGC
AAGGAGCTGCCCGGCGTGGGCGAGATGTTATTCAACACGCTCCAGGCGTGTCCCGTGGACACCCG
GTCCGAGTTGTTGCGGGGCATTGTCCTCTCTGGCGGGTCGCTGATGTACCCCGGGTTGCCTCTGC
GGCTCGAGAAGGAGCTCAAGCAGTTGTACTTGACCCGGGTGCTTGGCGGAGACGGCGAGCGGTTG
AAGAACTTCAAGGTGCGCATCGAGGACCCCCCGAGACGCCGGCACATGGTGTTCATTGGCGGAGC
GGTGTTGGCCAACATCATGAAGGACAAGGAGCACTTGTGGCTCACTCGCCAGGAGTGGGAGGAGC
AGGGCCCGCGGGCGTTGCAGAAGTTCCAGCAGCGGTAGTTATGAATAAATGAAATAGGAAGAAGG
TTAGTGGGTAACTGGGTTTAAATGGGTTTAACGGGTTTAGCTGGG
Right flanking sequence: Indices 63788 -- 64287
CCACTGGGTGTTTGATGATGACCAGTTTACGAGAACGGGTACCTTTTGTTAGGGCGATTTATAGC
TTAAGCGTTTAGCTAGGTAGGGTGTGCTCAGTGGTTCGCTGGGGGGATGAGGTAATAGCCCCAAG
TGTTGCGTTCAGGTGTTTCTTCGTTTAAGCTCACTGGGTTTGATTGCGATTGTGACCAGCCAACG
AGAACGGGTACTTTACTACGAATAGGGTGATTTCTAGCTCAATTGTGTCTAGAGAGATAGTGTAG
TGAGCTCAGATAGGGCAGTGAGCTCAGATAGGGTAGTGTGCTCAGATTGGGTAGTGTGCAAAGAT
AAGGTAGTGAGCTTATTACTGAGCTACGGCTCCCGAGTATTGCGTTCACGAAAGGAAAAAGGGAA
AAAGGTGGAGGTGGAAAGGGGAGAGAAGAAAGAAGGTCATGAAGTTAAGCATAGTGGGGAGTAAT
AAGAGTATGGTGTGAAGAAAAGACGTCTGTTGAAATCTGGTGGGA
Found at i:64060 original size:18 final size:18
Alignment explanation
Indices: 64037--64125 Score: 106
Period size: 18 Copynumber: 4.9 Consensus size: 18
64027 GTGTCTAGAG
*
64037 AGATAGTGTAGTGAGCTC
1 AGATAGGGTAGTGAGCTC
*
64055 AGATAGGGCAGTGAGCTC
1 AGATAGGGTAGTGAGCTC
*
64073 AGATAGGGTAGTGTGCTC
1 AGATAGGGTAGTGAGCTC
* * **
64091 AGATTGGGTAGTGTGCAA
1 AGATAGGGTAGTGAGCTC
*
64109 AGATAAGGTAGTGAGCT
1 AGATAGGGTAGTGAGCT
64126 TATTACTGAG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.28, C:0.10, G:0.37, T:0.25
Consensus pattern (18 bp):
AGATAGGGTAGTGAGCTC
Left flanking sequence: Indices 63537 -- 64036
CGAGGACCCCCCGAGACGCCGGCACATGGTGTTCATTGGCGGAGCGGTGTTGGCCAACATCATGA
AGGACAAGGAGCACTTGTGGCTCACTCGCCAGGAGTGGGAGGAGCAGGGCCCGCGGGCGTTGCAG
AAGTTCCAGCAGCGGTAGTTATGAATAAATGAAATAGGAAGAAGGTTAGTGGGTAACTGGGTTTA
AATGGGTTTAACGGGTTTAGCTGGGTAAGCTCTGGGTTTAAGCTCTGGGTTTAAGCCCACTGGGT
GTTTGATGATGACCAGTTTACGAGAACGGGTACCTTTTGTTAGGGCGATTTATAGCTTAAGCGTT
TAGCTAGGTAGGGTGTGCTCAGTGGTTCGCTGGGGGGATGAGGTAATAGCCCCAAGTGTTGCGTT
CAGGTGTTTCTTCGTTTAAGCTCACTGGGTTTGATTGCGATTGTGACCAGCCAACGAGAACGGGT
ACTTTACTACGAATAGGGTGATTTCTAGCTCAATTGTGTCTAGAG
Right flanking sequence: Indices 64126 -- 64625
TATTACTGAGCTACGGCTCCCGAGTATTGCGTTCACGAAAGGAAAAAGGGAAAAAGGTGGAGGTG
GAAAGGGGAGAGAAGAAAGAAGGTCATGAAGTTAAGCATAGTGGGGAGTAATAAGAGTATGGTGT
GAAGAAAAGACGTCTGTTGAAATCTGGTGGGAATTGAGACCATAGTCATAGTGGTGAAAATAGAA
CTATATGAATTCGAATCCGCTAGTGGTGGGGTAGAGTTAAAGCGGAGCGTTGGGTGAGGCTCGAT
CGCTCTTTCTTGTGGCTGGGAGCTTCTCTTCATATAGTTGTTGTGGCTCCTTTGCAGTCCACTCT
AGGCAAATGCCTGTCAATGTATCCAGATTAGTAGTTGACAATACTCCACCTTTAGTGCAGGGCCA
AGCATTCCACGGCTTGACAGTGGCCAGTTGTAACCCGCTTGTGACCCGCTTGTGTTAAGAGTAGA
CAGATTGGCTCGTTGATAGAATCTAGCGAGTCTATTTTGCCTGTT
Found at i:65216 original size:13 final size:13
Alignment explanation
Indices: 65198--65225 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
65188 TTATGCCACT
65198 GTCCCTGGTCACC
1 GTCCCTGGTCACC
65211 GTCCCTGGTCACC
1 GTCCCTGGTCACC
65224 GT
1 GT
65226 ATTTTCTCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.43, G:0.25, T:0.25
Consensus pattern (13 bp):
GTCCCTGGTCACC
Left flanking sequence: Indices 64698 -- 65197
TTGGACCCATCATGGATACGCCGAAGAAAGAACGCTAATTCCACGGGTTGTCCCATGGAAATCGC
TTCAAAGGGACCACTAAACTCACTGGTAATCCCCCACCCTGACAGCTCTCACCTCGTTCTGAGCA
ACTGCCCCGAATATCCACCGTAGCCCGCCAACTAGGCGGTGGGGAGGTCTGGAGGGGCGCCGCCT
GCGGCCCCTCCAGCTGTCAGTAGCGATTTCAGCTTATACCAGCGTTTGTTTGTTTAAGCTCACCC
GGTTTTGATTGGATTGTGACCAGCCTAAGTAGATGAGAGTACCTTACAAAATTCATAGGGCGACG
TAAAGCTCAATTGAGTACTGGGACTCTTTCTGACTCGATTCTTACTCGCTTCGGACTCGATTCGA
CCCTCAGGCTTGGTATGGCTTCCACACACCTGGCCGCACTCTCGCGTCTACCTGGGCCTACTGCG
GTAATTGGGCTCCTGCCCTGTAGAAAGCCGTGACGTTATGCCACT
Right flanking sequence: Indices 65226 -- 65725
ATTTTCTCCGCTATTCTCCACTATTTCTCCACTATTTCTCCGCTTTCTCACTGCTACTTCCCTTG
GCGTTTGCAGCCATACAATGGCAGGCTGTGTAGCAAAGGGCTATTGTTCCCGGTGTTTTGCTTAG
TGCTTCAATGGGCGTGTTTACACCCGGTGTGGCTACGCGTTTGCCACCGCAGAGCCAGCTTTGTG
CCCACATTGGGCTTTGTGGCTTGTTGCCAAGGCTGACGCGAGCCAAGCAGAGCAACCTCGTAGTG
AAACACTCGCCCGAGGGTGGAGCCCTGGGCCTGTGCACAAGACCACCTGCGTGCTTGTCGCCCCT
AGTCACTACACTCACTACACTCACTACTGTCACAAGACTTCCTACCCGGGTTGCCTGCCCTGGCT
CAGACAGTTACACGCGTCTACGACATTTTGGTGAGGGGGAGCAATGACGGCCGTAGCGGGCTGAC
GGGGCTGTAAACCGCTCTAATGACGTGACGTCTCTCTTCTACTGC
Found at i:65255 original size:11 final size:11
Alignment explanation
Indices: 65228--65266 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
65218 GTCACCGTAT
*
65228 TTTCTCCGCTA
1 TTTCTCCACTA
65239 -TTCTCCACTA
1 TTTCTCCACTA
65249 TTTCTCCACTA
1 TTTCTCCACTA
65260 TTTCTCC
1 TTTCTCC
65267 GCTTTCTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.13, C:0.38, G:0.03, T:0.46
Consensus pattern (11 bp):
TTTCTCCACTA
Left flanking sequence: Indices 64728 -- 65227
AACGCTAATTCCACGGGTTGTCCCATGGAAATCGCTTCAAAGGGACCACTAAACTCACTGGTAAT
CCCCCACCCTGACAGCTCTCACCTCGTTCTGAGCAACTGCCCCGAATATCCACCGTAGCCCGCCA
ACTAGGCGGTGGGGAGGTCTGGAGGGGCGCCGCCTGCGGCCCCTCCAGCTGTCAGTAGCGATTTC
AGCTTATACCAGCGTTTGTTTGTTTAAGCTCACCCGGTTTTGATTGGATTGTGACCAGCCTAAGT
AGATGAGAGTACCTTACAAAATTCATAGGGCGACGTAAAGCTCAATTGAGTACTGGGACTCTTTC
TGACTCGATTCTTACTCGCTTCGGACTCGATTCGACCCTCAGGCTTGGTATGGCTTCCACACACC
TGGCCGCACTCTCGCGTCTACCTGGGCCTACTGCGGTAATTGGGCTCCTGCCCTGTAGAAAGCCG
TGACGTTATGCCACTGTCCCTGGTCACCGTCCCTGGTCACCGTAT
Right flanking sequence: Indices 65267 -- 65766
GCTTTCTCACTGCTACTTCCCTTGGCGTTTGCAGCCATACAATGGCAGGCTGTGTAGCAAAGGGC
TATTGTTCCCGGTGTTTTGCTTAGTGCTTCAATGGGCGTGTTTACACCCGGTGTGGCTACGCGTT
TGCCACCGCAGAGCCAGCTTTGTGCCCACATTGGGCTTTGTGGCTTGTTGCCAAGGCTGACGCGA
GCCAAGCAGAGCAACCTCGTAGTGAAACACTCGCCCGAGGGTGGAGCCCTGGGCCTGTGCACAAG
ACCACCTGCGTGCTTGTCGCCCCTAGTCACTACACTCACTACACTCACTACTGTCACAAGACTTC
CTACCCGGGTTGCCTGCCCTGGCTCAGACAGTTACACGCGTCTACGACATTTTGGTGAGGGGGAG
CAATGACGGCCGTAGCGGGCTGACGGGGCTGTAAACCGCTCTAATGACGTGACGTCTCTCTTCTA
CTGCATTACCTCATCGTACCACTCTCGCCACCCACCACTCTCGCC
Found at i:65583 original size:9 final size:9
Alignment explanation
Indices: 65553--65577 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
65543 TCGCCCCTAG
65553 TCACTACAC
1 TCACTACAC
65562 TCACTACAC
1 TCACTACAC
65571 TCACTAC
1 TCACTAC
65578 TGTCACAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (9 bp):
TCACTACAC
Left flanking sequence: Indices 65053 -- 65552
TGACTCGATTCTTACTCGCTTCGGACTCGATTCGACCCTCAGGCTTGGTATGGCTTCCACACACC
TGGCCGCACTCTCGCGTCTACCTGGGCCTACTGCGGTAATTGGGCTCCTGCCCTGTAGAAAGCCG
TGACGTTATGCCACTGTCCCTGGTCACCGTCCCTGGTCACCGTATTTTCTCCGCTATTCTCCACT
ATTTCTCCACTATTTCTCCGCTTTCTCACTGCTACTTCCCTTGGCGTTTGCAGCCATACAATGGC
AGGCTGTGTAGCAAAGGGCTATTGTTCCCGGTGTTTTGCTTAGTGCTTCAATGGGCGTGTTTACA
CCCGGTGTGGCTACGCGTTTGCCACCGCAGAGCCAGCTTTGTGCCCACATTGGGCTTTGTGGCTT
GTTGCCAAGGCTGACGCGAGCCAAGCAGAGCAACCTCGTAGTGAAACACTCGCCCGAGGGTGGAG
CCCTGGGCCTGTGCACAAGACCACCTGCGTGCTTGTCGCCCCTAG
Right flanking sequence: Indices 65578 -- 66077
TGTCACAAGACTTCCTACCCGGGTTGCCTGCCCTGGCTCAGACAGTTACACGCGTCTACGACATT
TTGGTGAGGGGGAGCAATGACGGCCGTAGCGGGCTGACGGGGCTGTAAACCGCTCTAATGACGTG
ACGTCTCTCTTCTACTGCATTACCTCATCGTACCACTCTCGCCACCCACCACTCTCGCCACCACC
ACTCTTCGCATGCTCCCCTCTTACCGTATTGGGGTGTCTCACCTGGTCGCGTGAAACTTGGGGTA
GCAATGAGACACAATGAGCGCATTACACCGCAGGGAGCAACCGGCAACAACGGCGGCGACAATAG
CCGTGGGTCCCGGGGCCGTAACCCACGCCTGATGACCATGGTTTGTGTACGTCTTTCTCCCAAAC
ACACGTCCCACACGACCCACACCGCCCACGCGGCCCACGCGTCTCCGCCTCATAACCAGGCATCT
CGCCCCATCACGCGGAAAGAAAGCGCCACAAAAGCCCTATTAACG
Found at i:65781 original size:16 final size:16
Alignment explanation
Indices: 65739--65777 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
65729 ACCTCATCGT
65739 ACCACTCTCGCCACCC
1 ACCACTCTCGCCACCC
65755 ACCACTCTCGCCA-CC
1 ACCACTCTCGCCACCC
65770 ACCACTCT
1 ACCACTCT
65778 TCGCATGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.21, C:0.59, G:0.05, T:0.15
Consensus pattern (16 bp):
ACCACTCTCGCCACCC
Left flanking sequence: Indices 65239 -- 65738
TTCTCCACTATTTCTCCACTATTTCTCCGCTTTCTCACTGCTACTTCCCTTGGCGTTTGCAGCCA
TACAATGGCAGGCTGTGTAGCAAAGGGCTATTGTTCCCGGTGTTTTGCTTAGTGCTTCAATGGGC
GTGTTTACACCCGGTGTGGCTACGCGTTTGCCACCGCAGAGCCAGCTTTGTGCCCACATTGGGCT
TTGTGGCTTGTTGCCAAGGCTGACGCGAGCCAAGCAGAGCAACCTCGTAGTGAAACACTCGCCCG
AGGGTGGAGCCCTGGGCCTGTGCACAAGACCACCTGCGTGCTTGTCGCCCCTAGTCACTACACTC
ACTACACTCACTACTGTCACAAGACTTCCTACCCGGGTTGCCTGCCCTGGCTCAGACAGTTACAC
GCGTCTACGACATTTTGGTGAGGGGGAGCAATGACGGCCGTAGCGGGCTGACGGGGCTGTAAACC
GCTCTAATGACGTGACGTCTCTCTTCTACTGCATTACCTCATCGT
Right flanking sequence: Indices 65778 -- 66277
TCGCATGCTCCCCTCTTACCGTATTGGGGTGTCTCACCTGGTCGCGTGAAACTTGGGGTAGCAAT
GAGACACAATGAGCGCATTACACCGCAGGGAGCAACCGGCAACAACGGCGGCGACAATAGCCGTG
GGTCCCGGGGCCGTAACCCACGCCTGATGACCATGGTTTGTGTACGTCTTTCTCCCAAACACACG
TCCCACACGACCCACACCGCCCACGCGGCCCACGCGTCTCCGCCTCATAACCAGGCATCTCGCCC
CATCACGCGGAAAGAAAGCGCCACAAAAGCCCTATTAACGCTCGGAACATCATCTGCTCGCTTTC
CCCGGGTTTTCCCTATCGCCGGTGACCTGTCACCGTGGTGTGTTGCGAGCCCGGGCCCAGAAAAT
ATCCGGAGCCGTGGGCCGGACAGCCTCCAGACGTGACCCACGGCAGAGTGGGCCAATGTGGAGCC
ACCCCTGGTACCCCTCACTGTTTCGCCCCCCTCACTGTTTTGCCC
Found at i:66265 original size:17 final size:17
Alignment explanation
Indices: 66243--66278 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
66233 ACCCCTGGTA
66243 CCCCTCACTGTTTCGCC
1 CCCCTCACTGTTTCGCC
*
66260 CCCCTCACTGTTTTGCC
1 CCCCTCACTGTTTCGCC
66277 CC
1 CC
66279 TCACGTTCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.53, G:0.11, T:0.31
Consensus pattern (17 bp):
CCCCTCACTGTTTCGCC
Left flanking sequence: Indices 65743 -- 66242
CTCTCGCCACCCACCACTCTCGCCACCACCACTCTTCGCATGCTCCCCTCTTACCGTATTGGGGT
GTCTCACCTGGTCGCGTGAAACTTGGGGTAGCAATGAGACACAATGAGCGCATTACACCGCAGGG
AGCAACCGGCAACAACGGCGGCGACAATAGCCGTGGGTCCCGGGGCCGTAACCCACGCCTGATGA
CCATGGTTTGTGTACGTCTTTCTCCCAAACACACGTCCCACACGACCCACACCGCCCACGCGGCC
CACGCGTCTCCGCCTCATAACCAGGCATCTCGCCCCATCACGCGGAAAGAAAGCGCCACAAAAGC
CCTATTAACGCTCGGAACATCATCTGCTCGCTTTCCCCGGGTTTTCCCTATCGCCGGTGACCTGT
CACCGTGGTGTGTTGCGAGCCCGGGCCCAGAAAATATCCGGAGCCGTGGGCCGGACAGCCTCCAG
ACGTGACCCACGGCAGAGTGGGCCAATGTGGAGCCACCCCTGGTA
Right flanking sequence: Indices 66279 -- 66778
TCACGTTCCGCCCCTGATCGGTCCGTCGTTTCTTGTTTCGGACTCCATGACGCAATCGCACATTA
TTCCCCAGATGGACAACGTGGGCCGGTCACTGGCTGCAAAACCGCTAATAAAAGTAGCGTTAAGC
CCCATGATTTTGTAGAGGTAAACACACAGGCACACACACAACGATGAGCACCGTGGAAAACCTAC
CTACATACCCCGTGGTCCCCGAACCGCTGTTTGACCTGCTCTCGCTCGACCGGCTCCTACCGCTC
GAGACGAGCTGGCGCCGGCTGTTGTTTCGCCTGAGGCTCGAGGAGACCGATGGCGAGTACCCCAG
CGACACCAGCTCGTTGATGGGCGCGCCGCCAACCTTCTCCCAGGAGACGCTTTCGCTGGCCGCGC
CCCTGGGGGCCAAGTTTGATTTGGGCCCCATGGAGCTGAGTCTTAACCCCGAAGCAGGCTACGAG
GGCGACTCAGACGAGGTCGAGGAGGGTGGCGACGACGACGACGCC
Found at i:66278 original size:15 final size:16
Alignment explanation
Indices: 66243--66292 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 16
66233 ACCCCTGGTA
66243 CCCCTCACTGTTTCGCC
1 CCCCTCACTGTTTCG-C
*
66260 CCCCTCACTGTTTTG-
1 CCCCTCACTGTTTCGC
*
66275 CCCCTCAC-GTTCCGC
1 CCCCTCACTGTTTCGC
66290 CCC
1 CCC
66293 TGATCGGTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 4 0.14
15 11 0.38
17 14 0.48
ACGTcount: A:0.06, C:0.54, G:0.12, T:0.28
Consensus pattern (16 bp):
CCCCTCACTGTTTCGC
Left flanking sequence: Indices 65743 -- 66242
CTCTCGCCACCCACCACTCTCGCCACCACCACTCTTCGCATGCTCCCCTCTTACCGTATTGGGGT
GTCTCACCTGGTCGCGTGAAACTTGGGGTAGCAATGAGACACAATGAGCGCATTACACCGCAGGG
AGCAACCGGCAACAACGGCGGCGACAATAGCCGTGGGTCCCGGGGCCGTAACCCACGCCTGATGA
CCATGGTTTGTGTACGTCTTTCTCCCAAACACACGTCCCACACGACCCACACCGCCCACGCGGCC
CACGCGTCTCCGCCTCATAACCAGGCATCTCGCCCCATCACGCGGAAAGAAAGCGCCACAAAAGC
CCTATTAACGCTCGGAACATCATCTGCTCGCTTTCCCCGGGTTTTCCCTATCGCCGGTGACCTGT
CACCGTGGTGTGTTGCGAGCCCGGGCCCAGAAAATATCCGGAGCCGTGGGCCGGACAGCCTCCAG
ACGTGACCCACGGCAGAGTGGGCCAATGTGGAGCCACCCCTGGTA
Right flanking sequence: Indices 66293 -- 66792
TGATCGGTCCGTCGTTTCTTGTTTCGGACTCCATGACGCAATCGCACATTATTCCCCAGATGGAC
AACGTGGGCCGGTCACTGGCTGCAAAACCGCTAATAAAAGTAGCGTTAAGCCCCATGATTTTGTA
GAGGTAAACACACAGGCACACACACAACGATGAGCACCGTGGAAAACCTACCTACATACCCCGTG
GTCCCCGAACCGCTGTTTGACCTGCTCTCGCTCGACCGGCTCCTACCGCTCGAGACGAGCTGGCG
CCGGCTGTTGTTTCGCCTGAGGCTCGAGGAGACCGATGGCGAGTACCCCAGCGACACCAGCTCGT
TGATGGGCGCGCCGCCAACCTTCTCCCAGGAGACGCTTTCGCTGGCCGCGCCCCTGGGGGCCAAG
TTTGATTTGGGCCCCATGGAGCTGAGTCTTAACCCCGAAGCAGGCTACGAGGGCGACTCAGACGA
GGTCGAGGAGGGTGGCGACGACGACGACGCCGTGAGCATAGCAGG
Found at i:66994 original size:9 final size:9
Alignment explanation
Indices: 66972--67008 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
66962 GGAAGGAGGT
*
66972 GGGGTAGTG
1 GGGGTGGTG
66981 GGGGTGGTG
1 GGGGTGGTG
*
66990 AGGGTGGTG
1 GGGGTGGTG
66999 GGGGTGGTG
1 GGGGTGGTG
67008 G
1 G
67009 TTGGGTCTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.05, C:0.00, G:0.73, T:0.22
Consensus pattern (9 bp):
GGGGTGGTG
Left flanking sequence: Indices 66472 -- 66971
ACCTACATACCCCGTGGTCCCCGAACCGCTGTTTGACCTGCTCTCGCTCGACCGGCTCCTACCGC
TCGAGACGAGCTGGCGCCGGCTGTTGTTTCGCCTGAGGCTCGAGGAGACCGATGGCGAGTACCCC
AGCGACACCAGCTCGTTGATGGGCGCGCCGCCAACCTTCTCCCAGGAGACGCTTTCGCTGGCCGC
GCCCCTGGGGGCCAAGTTTGATTTGGGCCCCATGGAGCTGAGTCTTAACCCCGAAGCAGGCTACG
AGGGCGACTCAGACGAGGTCGAGGAGGGTGGCGACGACGACGACGCCGTGAGCATAGCAGGGATC
CCCACCAGTGCGCTCCTGCCCCACACGTGCTACTACTACAGCACCCGCAACCAGCCGCGACACCC
GTTGCTGAGGCAACGGTCCAACTGTAGTATGCTGTCGTTCGAGCTGGAGTCACAGGAGTTCGAGA
CGGTGTTTATTCGCATGTAGCATAATAAAGGCATAGGAAGGAGGT
Right flanking sequence: Indices 67009 -- 67508
TTGGGTCTGAGAGTCCTCTGAGAGTCTCTGAAAGTCTTCTGAGGGTCTACTGAGGGTGTTGTAAC
ATTATTGTGACGGTAAGGTGACGGTTTTGTGAGAGTAATGGAGGTTTAGGGCTTTGTGGAGCGTT
GTAAAGGTCTTCTAGTGTTATTGTATGGTATTGTGGTATTCAACTCAAAGGCTTAGTGACTTGGA
AACAGACTTCGCTTAGGAAACCACTACTCTCGCTTATGTCTACGACTACATATCCACGACTCAGC
TATCCGGTTGGTTGTGAAAACCACTTTTGAGTGTTTTACTACCATGGTGTCTGCGTTCATCTCCA
CGGTGACTAAGCCAACGAATTTCACGACACAAACCAGAGCCAGAGTCAACTCGCCTCACAACGGT
TCGCTGCCCAGTTTCGCCTCGTTGCAGTGCCACTACCCCATAATGGGCCCATACTACGTGTCTTT
ATTCGGTTAATTCGTTCATCTCAGAGAAGATTCTTTCCCAGACGG
Found at i:66999 original size:18 final size:17
Alignment explanation
Indices: 66969--67008 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
66959 ATAGGAAGGA
66969 GGTGGGGTAGTGGGGGT
1 GGTGGGGTAGTGGGGGT
*
66986 GGTGAGGGTGGTGGGGGT
1 GGTG-GGGTAGTGGGGGT
67004 GGTGG
1 GGTGG
67009 TTGGGTCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.05, C:0.00, G:0.72, T:0.23
Consensus pattern (17 bp):
GGTGGGGTAGTGGGGGT
Left flanking sequence: Indices 66469 -- 66968
CCTACCTACATACCCCGTGGTCCCCGAACCGCTGTTTGACCTGCTCTCGCTCGACCGGCTCCTAC
CGCTCGAGACGAGCTGGCGCCGGCTGTTGTTTCGCCTGAGGCTCGAGGAGACCGATGGCGAGTAC
CCCAGCGACACCAGCTCGTTGATGGGCGCGCCGCCAACCTTCTCCCAGGAGACGCTTTCGCTGGC
CGCGCCCCTGGGGGCCAAGTTTGATTTGGGCCCCATGGAGCTGAGTCTTAACCCCGAAGCAGGCT
ACGAGGGCGACTCAGACGAGGTCGAGGAGGGTGGCGACGACGACGACGCCGTGAGCATAGCAGGG
ATCCCCACCAGTGCGCTCCTGCCCCACACGTGCTACTACTACAGCACCCGCAACCAGCCGCGACA
CCCGTTGCTGAGGCAACGGTCCAACTGTAGTATGCTGTCGTTCGAGCTGGAGTCACAGGAGTTCG
AGACGGTGTTTATTCGCATGTAGCATAATAAAGGCATAGGAAGGA
Right flanking sequence: Indices 67009 -- 67508
TTGGGTCTGAGAGTCCTCTGAGAGTCTCTGAAAGTCTTCTGAGGGTCTACTGAGGGTGTTGTAAC
ATTATTGTGACGGTAAGGTGACGGTTTTGTGAGAGTAATGGAGGTTTAGGGCTTTGTGGAGCGTT
GTAAAGGTCTTCTAGTGTTATTGTATGGTATTGTGGTATTCAACTCAAAGGCTTAGTGACTTGGA
AACAGACTTCGCTTAGGAAACCACTACTCTCGCTTATGTCTACGACTACATATCCACGACTCAGC
TATCCGGTTGGTTGTGAAAACCACTTTTGAGTGTTTTACTACCATGGTGTCTGCGTTCATCTCCA
CGGTGACTAAGCCAACGAATTTCACGACACAAACCAGAGCCAGAGTCAACTCGCCTCACAACGGT
TCGCTGCCCAGTTTCGCCTCGTTGCAGTGCCACTACCCCATAATGGGCCCATACTACGTGTCTTT
ATTCGGTTAATTCGTTCATCTCAGAGAAGATTCTTTCCCAGACGG
Found at i:67038 original size:21 final size:21
Alignment explanation
Indices: 67014--67062 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
67004 GGTGGTTGGG
67014 TCTGAGAGTCCTCTGAGAGTC
1 TCTGAGAGTCCTCTGAGAGTC
* * *
67035 TCTGAAAGTCTTCTGAGGGTC
1 TCTGAGAGTCCTCTGAGAGTC
67056 TACTGAG
1 T-CTGAG
67063 GGTGTTGTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (21 bp):
TCTGAGAGTCCTCTGAGAGTC
Left flanking sequence: Indices 66514 -- 67013
CTCGCTCGACCGGCTCCTACCGCTCGAGACGAGCTGGCGCCGGCTGTTGTTTCGCCTGAGGCTCG
AGGAGACCGATGGCGAGTACCCCAGCGACACCAGCTCGTTGATGGGCGCGCCGCCAACCTTCTCC
CAGGAGACGCTTTCGCTGGCCGCGCCCCTGGGGGCCAAGTTTGATTTGGGCCCCATGGAGCTGAG
TCTTAACCCCGAAGCAGGCTACGAGGGCGACTCAGACGAGGTCGAGGAGGGTGGCGACGACGACG
ACGCCGTGAGCATAGCAGGGATCCCCACCAGTGCGCTCCTGCCCCACACGTGCTACTACTACAGC
ACCCGCAACCAGCCGCGACACCCGTTGCTGAGGCAACGGTCCAACTGTAGTATGCTGTCGTTCGA
GCTGGAGTCACAGGAGTTCGAGACGGTGTTTATTCGCATGTAGCATAATAAAGGCATAGGAAGGA
GGTGGGGTAGTGGGGGTGGTGAGGGTGGTGGGGGTGGTGGTTGGG
Right flanking sequence: Indices 67063 -- 67562
GGTGTTGTAACATTATTGTGACGGTAAGGTGACGGTTTTGTGAGAGTAATGGAGGTTTAGGGCTT
TGTGGAGCGTTGTAAAGGTCTTCTAGTGTTATTGTATGGTATTGTGGTATTCAACTCAAAGGCTT
AGTGACTTGGAAACAGACTTCGCTTAGGAAACCACTACTCTCGCTTATGTCTACGACTACATATC
CACGACTCAGCTATCCGGTTGGTTGTGAAAACCACTTTTGAGTGTTTTACTACCATGGTGTCTGC
GTTCATCTCCACGGTGACTAAGCCAACGAATTTCACGACACAAACCAGAGCCAGAGTCAACTCGC
CTCACAACGGTTCGCTGCCCAGTTTCGCCTCGTTGCAGTGCCACTACCCCATAATGGGCCCATAC
TACGTGTCTTTATTCGGTTAATTCGTTCATCTCAGAGAAGATTCTTTCCCAGACGGGTATATGGC
AACTTTGGGTAACCTGGGGTGTGATGTGGGCACGGAAGATGTTAC
Found at i:67056 original size:11 final size:11
Alignment explanation
Indices: 67014--67062 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
67004 GGTGGTTGGG
*
67014 TCTGAGAGTCC
1 TCTGAGAGTCT
67025 TCTGAGAGTC-
1 TCTGAGAGTCT
*
67035 TCTGAAAGTCT
1 TCTGAGAGTCT
*
67046 TCTGAGGGTCT
1 TCTGAGAGTCT
*
67057 ACTGAG
1 TCTGAG
67063 GGTGTTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 9 0.27
11 24 0.73
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (11 bp):
TCTGAGAGTCT
Left flanking sequence: Indices 66514 -- 67013
CTCGCTCGACCGGCTCCTACCGCTCGAGACGAGCTGGCGCCGGCTGTTGTTTCGCCTGAGGCTCG
AGGAGACCGATGGCGAGTACCCCAGCGACACCAGCTCGTTGATGGGCGCGCCGCCAACCTTCTCC
CAGGAGACGCTTTCGCTGGCCGCGCCCCTGGGGGCCAAGTTTGATTTGGGCCCCATGGAGCTGAG
TCTTAACCCCGAAGCAGGCTACGAGGGCGACTCAGACGAGGTCGAGGAGGGTGGCGACGACGACG
ACGCCGTGAGCATAGCAGGGATCCCCACCAGTGCGCTCCTGCCCCACACGTGCTACTACTACAGC
ACCCGCAACCAGCCGCGACACCCGTTGCTGAGGCAACGGTCCAACTGTAGTATGCTGTCGTTCGA
GCTGGAGTCACAGGAGTTCGAGACGGTGTTTATTCGCATGTAGCATAATAAAGGCATAGGAAGGA
GGTGGGGTAGTGGGGGTGGTGAGGGTGGTGGGGGTGGTGGTTGGG
Right flanking sequence: Indices 67063 -- 67562
GGTGTTGTAACATTATTGTGACGGTAAGGTGACGGTTTTGTGAGAGTAATGGAGGTTTAGGGCTT
TGTGGAGCGTTGTAAAGGTCTTCTAGTGTTATTGTATGGTATTGTGGTATTCAACTCAAAGGCTT
AGTGACTTGGAAACAGACTTCGCTTAGGAAACCACTACTCTCGCTTATGTCTACGACTACATATC
CACGACTCAGCTATCCGGTTGGTTGTGAAAACCACTTTTGAGTGTTTTACTACCATGGTGTCTGC
GTTCATCTCCACGGTGACTAAGCCAACGAATTTCACGACACAAACCAGAGCCAGAGTCAACTCGC
CTCACAACGGTTCGCTGCCCAGTTTCGCCTCGTTGCAGTGCCACTACCCCATAATGGGCCCATAC
TACGTGTCTTTATTCGGTTAATTCGTTCATCTCAGAGAAGATTCTTTCCCAGACGGGTATATGGC
AACTTTGGGTAACCTGGGGTGTGATGTGGGCACGGAAGATGTTAC
Found at i:67823 original size:16 final size:16
Alignment explanation
Indices: 67778--67842 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
67768 TCCCACTCAA
*
67778 AGCGCTCGTA-AGCCC
1 AGCGCTCGTATAGCCT
* * *
67793 ATCTCTCGTAAAGCCT
1 AGCGCTCGTATAGCCT
67809 AGCGCAT-GTATAGCCT
1 AGCGC-TCGTATAGCCT
67825 AGCGCTCGTATAG-CT
1 AGCGCTCGTATAGCCT
67840 AGC
1 AGC
67843 ACTCCTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
15 14 0.34
16 26 0.63
17 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (16 bp):
AGCGCTCGTATAGCCT
Left flanking sequence: Indices 67278 -- 67777
GGTTGTGAAAACCACTTTTGAGTGTTTTACTACCATGGTGTCTGCGTTCATCTCCACGGTGACTA
AGCCAACGAATTTCACGACACAAACCAGAGCCAGAGTCAACTCGCCTCACAACGGTTCGCTGCCC
AGTTTCGCCTCGTTGCAGTGCCACTACCCCATAATGGGCCCATACTACGTGTCTTTATTCGGTTA
ATTCGTTCATCTCAGAGAAGATTCTTTCCCAGACGGGTATATGGCAACTTTGGGTAACCTGGGGT
GTGATGTGGGCACGGAAGATGTTACGAACACTGTACGAACACTGTTGGCGATTGCGACCGTTGCA
GTGCCCACGCTTAGAGAGCGAAACTGAGCACACAACCAGCCACTCTCAGTCCCAGGAACCCGTTG
ACAGCGTACAAAAGCGATCTCTCTTGGCCTCGCTAGGCTAATCTTTCCTTTCGCTAGTCTCTGTC
CATTACTAGACATGGTAACTTCGAACATCGCGAGATCCCACTCAA
Right flanking sequence: Indices 67843 -- 68342
ACTCCTACCACTCAAGAACCAACCCTCGATGATTCCTACTCTGACCTAATTCGAGTCAATTGCTG
CGATCCGTACCCCGATTCTCCACGCAATTAAACCATTGGCTGTGGTTCTCGCGGCAGTGCCAACA
CTTCTATTTTTGGCGTTCAGCCTCGTGTCCGACACCAGGCACGACAGTAACGGTCGCCCGAGCCA
CGTACCCTATACGACGGATACGAGTCGAACCCAACCAACCCTCCACCACCAACCTCCACCACCAA
TTCTCCACCACCAATTCTCCACCATCAACCCAGCAACACACCGTAGCAACCCAACCCCTTACTAA
TTTTACTAACCGTTCCCGCGGCACCCCCACAATAGCCGTTGTGACGTACCACCAGCTCGGGTGGC
AATTTTCACCGGCTGTCTAACCGAGTGACCAACGGTCACCAGACCGGTCCGGCCGGCTGCAAAAC
GGCGGTCACTATTCCGAGTCACAGCAAACCTGGCAAGTTTAGCCA
Found at i:68090 original size:14 final size:14
Alignment explanation
Indices: 68071--68133 Score: 74
Period size: 14 Copynumber: 4.6 Consensus size: 14
68061 GTCGAACCCA
68071 ACCAACCCTCCACC
1 ACCAACCCTCCACC
68085 ACCAA-CCTCCACC
1 ACCAACCCTCCACC
**
68098 ACCAATTCTCCACC
1 ACCAACCCTCCACC
**
68112 ACCAATTCTCCACC
1 ACCAACCCTCCACC
*
68126 ATCAACCC
1 ACCAACCC
68134 AGCAACACAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
13 13 0.30
14 31 0.70
ACGTcount: A:0.30, C:0.56, G:0.00, T:0.14
Consensus pattern (14 bp):
ACCAACCCTCCACC
Left flanking sequence: Indices 67571 -- 68070
TACGAACACTGTTGGCGATTGCGACCGTTGCAGTGCCCACGCTTAGAGAGCGAAACTGAGCACAC
AACCAGCCACTCTCAGTCCCAGGAACCCGTTGACAGCGTACAAAAGCGATCTCTCTTGGCCTCGC
TAGGCTAATCTTTCCTTTCGCTAGTCTCTGTCCATTACTAGACATGGTAACTTCGAACATCGCGA
GATCCCACTCAAAGCGCTCGTAAGCCCATCTCTCGTAAAGCCTAGCGCATGTATAGCCTAGCGCT
CGTATAGCTAGCACTCCTACCACTCAAGAACCAACCCTCGATGATTCCTACTCTGACCTAATTCG
AGTCAATTGCTGCGATCCGTACCCCGATTCTCCACGCAATTAAACCATTGGCTGTGGTTCTCGCG
GCAGTGCCAACACTTCTATTTTTGGCGTTCAGCCTCGTGTCCGACACCAGGCACGACAGTAACGG
TCGCCCGAGCCACGTACCCTATACGACGGATACGAGTCGAACCCA
Right flanking sequence: Indices 68134 -- 68633
AGCAACACACCGTAGCAACCCAACCCCTTACTAATTTTACTAACCGTTCCCGCGGCACCCCCACA
ATAGCCGTTGTGACGTACCACCAGCTCGGGTGGCAATTTTCACCGGCTGTCTAACCGAGTGACCA
ACGGTCACCAGACCGGTCCGGCCGGCTGCAAAACGGCGGTCACTATTCCGAGTCACAGCAAACCT
GGCAAGTTTAGCCACAAAAGAAAAGACGGGCCACCAAACCCAGCCAGGCCAACCACGGGCCAAGC
TCCTCCTCCGGAGGCCGTCTCCACCTCCTCTGCCCCCCACCACCTCGCCGCGGCCCGGGGTCGCC
GCCCCCAGCGCTGCTCCCCGGTATTGTTCCATGCGTCGCTGTATGCACTCCCGCAGCTACTTCAA
GTCGGAGCGGTGCCTGTCGTCGTTGCCATGGCTGCTGACACCCCTATGACGCTGGAGTCGCTGGC
TCACAACATCGACGTGATCCAGCGACGCAATTCGACCCTGCGCCG
Found at i:71528 original size:11 final size:11
Alignment explanation
Indices: 71512--71536 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
71502 GTTTGGACTA
71512 GTGGGCTTCTG
1 GTGGGCTTCTG
71523 GTGGGCTTCTG
1 GTGGGCTTCTG
71534 GTG
1 GTG
71537 ATGTGTGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (11 bp):
GTGGGCTTCTG
Left flanking sequence: Indices 71012 -- 71511
TCCACTTTTGGTGCCTCGAACTCCGCCATCGGGTCCTCGAGCTCCAAATCGCGTTTGGTCTGCCC
GGCCCGAGCCAGCCCCACGGGCGGCAATTGGTTAAGCTGGGCGCGTTCTTCCTCGCTCACTCTAA
CCTCCTGCCACCTGGGCTGCTCCTGCTCGGCCTTCTTCACCGCCAACTCCGCCTGTTTGGCTGCG
ATGTCCACGATCTTCCCCAGCAGGTCTCGGTACACGGTGGCGGGCTGTTCGGGCTCGGTTTTCGG
GGCAGGCACGTCTACCTTCTCGCCGGTGTCGATCCGTTTGAACCCACGACTCTTTTTCTTTGGTT
CTTCAGCGAGGGGATCGTCCTCGGTAGCGATCTTGGGCACGATGCGGGAGTGGACGGTGACGGTG
GAGCGGGCCACGGGGTCGGCCAGCTCTTTGGCCTTCTTTTTCTTCTTCGGGGCGGACTTGTATTT
GTCGAGATAGTCCATGGTGGGGTGGAGCCGGTGGTGTTTGGACTA
Right flanking sequence: Indices 71537 -- 72036
ATGTGTGTACGGGCTCAGAACGGGAGATAGTAGGTTGGGAGGCGGGAAGTGGGAATAAAGGGAGG
TGGTGCTGGAGAGGAAAGGCGATGTGAGGAGTGAAACTAGTGGGGTGGTATTGCTAAGTCCCGTG
GGTTTAATAATCTTACCCATGGTTCGAACTCGTCAAGATCCACGGTATGCTGATTTCTTGAGAAA
CATACAAAAATATATCGAAATAGGACCAACGTAACCCAAATGTTGGCTCCTTTCCCACCATCACC
GCCTCTCTACCAACGCAGGCAAACGAAATTTCGCCAAAGCCAGCCCTATTGACATTCTTCTCCAC
CAATTCTTCTAATACTCATTCTTTTCCCTACCAACCACTCTTCCCACTACCAACCACTTCTTCCA
CTACCGCCACTCTTCCCACTCTTCCCACTCTTCCCACTCTCCCCACTTCTCCCACCCCACCCCTC
CCACTACCACTCCATCTACCATTACTCTAACTTTTATTACATTAC
Done.