sallet_2.scaffold.fasta.s73.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold85
Parameters: 2 7 7 80 10 50 500
Length:  132070

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925--1973	18	2.5	21	74	19	59	24	34	24	16	1.95
2069--2123	13	4.4	13	88	4	78	18	12	38	30	1.88
4580--4636	15	3.9	15	68	22	50	43	29	14	12	1.81
4590--4662	29	2.7	27	91	6	112	45	26	13	15	1.83
6367--6428	11	5.7	11	77	9	56	33	1	48	16	1.56
6394--6436	22	2.0	22	85	0	59	27	0	53	18	1.45
7728--7845	51	2.3	52	85	4	150	26	11	32	29	1.92
7823--7854	17	1.9	17	93	6	57	21	18	31	28	1.97
7937--7984	14	3.4	14	97	0	87	6	18	43	31	1.75
8859--8937	17	4.6	17	73	4	70	32	1	45	20	1.59
8863--8937	34	2.2	34	80	4	89	33	1	45	20	1.59
16229--16273	12	3.8	12	81	0	54	11	17	22	48	1.78
26228--26316	14	7.1	13	78	17	82	16	24	33	24	1.96
26226--26288	28	2.3	28	88	2	92	17	23	34	23	1.96
26226--26288	14	4.6	14	90	4	83	17	23	34	23	1.96
30865--30925	9	6.9	9	83	3	79	24	52	0	22	1.47
30919--30946	13	2.2	13	100	0	56	25	60	0	14	1.34
31730--31818	43	2.0	45	91	6	146	26	19	25	28	1.99
34385--34421	12	3.1	12	100	0	74	27	32	8	32	1.86
34310--34430	14	9.1	14	83	7	101	29	31	11	27	1.92
38377--38404	14	2.0	14	100	0	56	50	0	21	28	1.49
38486--38552	28	2.4	28	82	2	91	23	22	14	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42962--43056	16	5.9	16	98	1	181	31	37	17	12	1.88
43147--43284	51	2.7	51	91	0	213	29	36	24	8	1.86
50662--50694	14	2.4	14	100	0	66	36	18	30	15	1.91
51664--51688	10	2.5	10	100	0	50	20	8	20	52	1.71
53121--53208	27	3.1	27	75	9	95	22	30	36	10	1.88
53121--53211	30	3.1	29	73	23	93	23	30	36	9	1.87
55426--55632	74	2.7	78	74	10	208	27	28	19	24	1.99
62866--62963	42	2.3	43	82	6	121	36	33	13	16	1.87
63164--63192	12	2.4	12	100	0	58	0	58	24	17	1.38
66896--66941	12	3.8	12	82	2	56	13	21	30	34	1.91
66931--66958	13	2.2	13	100	0	56	17	39	28	14	1.89
114366--114395	12	2.5	12	100	0	60	10	26	63	0	1.26

Tables:   1

The End!