Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold85
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 132070
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1973 original size:21 final size:21
Alignment explanation
Indices: 1925--1973 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
1915 CCGAGGAGGA
**
1925 GTACTACATGGAGCAGTACCC
1 GTACTACCCGGAGCAGTACCC
1946 G---TACCCGGAGCAGTACCC
1 GTACTACCCGGAGCAGTACCC
1964 GTACTACCCG
1 GTACTACCCG
1974 CGGCGGGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
18 16 0.70
21 7 0.30
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.16
Consensus pattern (21 bp):
GTACTACCCGGAGCAGTACCC
Left flanking sequence: Indices 1425 -- 1924
GACACCACGGTGGACGCGCCCGAGCTCGACGGTGACGCCGAAGAGCTGGTGCTCGAGGCGCTGGA
CGACGAGTTGCTGATCATCATCGACCTGGACGACGCTCCGGCCCAGCAGCCGCCGCGCCGCAAGC
AGCGGCAAAAGAAAAAGGCCGGGTACCGGCCCAAGATGCTGCGCAACCTGAGCCTGGCGCTGTTG
CAGCTGTACAACAAGTACTACCAGACGCTGCCCTACGTCCAGCACGCGCAGCCGTACTACGGGTA
CCGCCCGCAGACGCCGCACGCGTTGCTGCGCACCAACCTGTTCCTGTACTACCCGTCGCCGGTGC
CGCTGCCGTACATAGGCCACCAGCAGCCGTACGCGCCGCCGCTGCCCTACCAGCCTGCGTATCCG
CCGCCAGGCCGCTACAAGGGCTTCCGGGGGCCGCCCGGGTCGCAGGTGATGGCGCAGTACTTGGC
CAAGAGCCACGAGCACCTCTACTCGCCGCAGATGCCCGAGGAGGA
Right flanking sequence: Indices 1974 -- 2473
CGGCGGGAGTCGCTGACGCGGCGGCGATAGGCATTGATCATGGACACTGGGTTAGGTAATGAATA
GACCAGGAGTATACGGTGTAATAAAGAAAGTAGGAGCTCGTTAGGAGCTTGCGTTAGGAGCTTGC
GTTTGGAGATTGCGTTAGGAAGATTTAACTATAGTTTCGAAAATGGGATAGTGGTGGCTTGGGTT
AGAATTCATAGGGGTGGAATTGGTTAGAAAATGAACAGGTATGGTTTTGGGGACGGTACAAACAC
AGGGTGGCTTTTTCGAGTTTTCCAGGTGGCTGTGGGGGGACTACGTTGGGACCATCTTTGCGTGA
TGTGTGGATCCTGCATATAGGTGGTGTATGGGGAAATTTCAAGAAGGCCAGAACTAGACTCATCT
CAACCAATTGACCTTTAAAACTAATTTAGCATTGTTTAATTCATCGTGTTTTACCCGTGCTATGT
ACTTTATCTACTAATATTGGCACTTTCTTATCTATAGTGGGTTAA
Found at i:2095 original size:13 final size:13
Alignment explanation
Indices: 2069--2123 Score: 78
Period size: 13 Copynumber: 4.4 Consensus size: 13
2059 ATAAAGAAAG
2069 TAGGAGC-T-CGT
1 TAGGAGCTTGCGT
2080 TAGGAGCTTGCGT
1 TAGGAGCTTGCGT
2093 TAGGAGCTTGCGT
1 TAGGAGCTTGCGT
* *
2106 TTGGAGATTGCGT
1 TAGGAGCTTGCGT
2119 TAGGA
1 TAGGA
2124 AGATTTAACT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
11 7 0.18
12 1 0.03
13 31 0.79
ACGTcount: A:0.18, C:0.13, G:0.38, T:0.31
Consensus pattern (13 bp):
TAGGAGCTTGCGT
Left flanking sequence: Indices 1569 -- 2068
AAGGCCGGGTACCGGCCCAAGATGCTGCGCAACCTGAGCCTGGCGCTGTTGCAGCTGTACAACAA
GTACTACCAGACGCTGCCCTACGTCCAGCACGCGCAGCCGTACTACGGGTACCGCCCGCAGACGC
CGCACGCGTTGCTGCGCACCAACCTGTTCCTGTACTACCCGTCGCCGGTGCCGCTGCCGTACATA
GGCCACCAGCAGCCGTACGCGCCGCCGCTGCCCTACCAGCCTGCGTATCCGCCGCCAGGCCGCTA
CAAGGGCTTCCGGGGGCCGCCCGGGTCGCAGGTGATGGCGCAGTACTTGGCCAAGAGCCACGAGC
ACCTCTACTCGCCGCAGATGCCCGAGGAGGAGTACTACATGGAGCAGTACCCGTACCCGGAGCAG
TACCCGTACTACCCGCGGCGGGAGTCGCTGACGCGGCGGCGATAGGCATTGATCATGGACACTGG
GTTAGGTAATGAATAGACCAGGAGTATACGGTGTAATAAAGAAAG
Right flanking sequence: Indices 2124 -- 2623
AGATTTAACTATAGTTTCGAAAATGGGATAGTGGTGGCTTGGGTTAGAATTCATAGGGGTGGAAT
TGGTTAGAAAATGAACAGGTATGGTTTTGGGGACGGTACAAACACAGGGTGGCTTTTTCGAGTTT
TCCAGGTGGCTGTGGGGGGACTACGTTGGGACCATCTTTGCGTGATGTGTGGATCCTGCATATAG
GTGGTGTATGGGGAAATTTCAAGAAGGCCAGAACTAGACTCATCTCAACCAATTGACCTTTAAAA
CTAATTTAGCATTGTTTAATTCATCGTGTTTTACCCGTGCTATGTACTTTATCTACTAATATTGG
CACTTTCTTATCTATAGTGGGTTAACTGTCACAGCAACTGTAGAGGTAAACTAGAAGAAGGTGGA
GTAATGGTGGGGGTAGGAGGGGTGTAAGGAAAGCAGCAGGTGCTAGCCCCAACGTCCACTAGTCA
ATGCATTGGTACAAGCACCTTCACCAGCTAATTTGAGTGATTTCG
Found at i:4605 original size:15 final size:15
Alignment explanation
Indices: 4580--4636 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
4570 CAACGAAACC
4580 ACCAA-ACCACAGTT
1 ACCAAGACCACAGTT
*
4594 ACCAAGACCACAGTAA
1 ACCAAGACCACAGT-T
*
4610 ACCAGTGA--A-AGTT
1 ACCA-AGACCACAGTT
4623 ACCAAGACCACAGT
1 ACCAAGACCACAGT
4637 AAACCAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 11
0.69 0.08 0.23
Matches are distributed among these distances:
12 2 0.06
13 4 0.12
14 9 0.27
15 12 0.36
16 4 0.12
17 2 0.06
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.12
Consensus pattern (15 bp):
ACCAAGACCACAGTT
Left flanking sequence: Indices 4080 -- 4579
AGTGGCGAGCCCCCGGATCAACTGTTTTTGGCGGAACATGGCTTCGAGGTGGGTTTGGCGTACTT
TTGAATGCGCTGCTACCATCGGGCTGTATGCAGAGTCCGGGAGCGGCCGAGTCAGAAAAAACGCC
TCGCCGGGGGTGGCCGGAGAGGGGAGGTGGGGGAAGAGGGCTACGAGGTTGGTGGTAGTGGTGGC
CGTGGTGGCCGTGGTAGAGGTGGCAGAGGTCAGCAGACACCGCTGGGTGGGTGGAGGCCCATCGC
ACTTGTACTCCCGGGAAAAAGCGGGGAGCAGAAGTGCGGGTGAAAAGTGCTGCCAGGACCAATGG
TAGTATGATCACCACAGTTTGTATCACCGCTGAACCCCCTACACCACCCCGTGGCGCCTTCCCTT
GGCGCCGTCCACCCCAGACACTTTCCGTATGGCGCAACCGTCGGAGTCGACGAAGCCCGGAATCC
TGCAGACAACCCGATTTGCAGCCGTCCGAAAGAGTCAACGAAACC
Right flanking sequence: Indices 4637 -- 5136
AAACCAAAAGTTACCAATACCACAGTGTAAAACTAAGAACCCACATTTACTCTTCCCCTCTTCGT
CCCGTCACCTAAATCGTTTCTATTCGTACGTAATGTGCATTAATCTACTCGTCGTCCTCGTCGTC
GAGGTCGTCCGCCTCCAAGGTGGCGATCTTGGCCTTGGCCTTCTCGATGTTCACCTGGGTCTGCT
CCTCCTGCTTGTCCTGCAACGCCGCAAGCGTCTCCTTCAACACCTTGATGGTGTCGGGCACCTGC
TCCTGCGAGGTGGGGAAGGGAATCGACAACTCCAGCAACTCGGTGATGATGTCAGGGTCCACGGT
GAAGTTCTTGGACTTGCCCTTGGCCTTCTTGCCCTTCTTCAGCTTCAGGGTGGGCACAAACTCCT
CCTGCTTCTTGGACACCACCACCATGTCGGCGGGCATCTCGACGGTACGGGCAGCCAACTTCAGG
GTGGTGAACCCACCGTTCTTCAACGGGTCCGCCGCCGCGGGCTTG
Found at i:4653 original size:26 final size:27
Alignment explanation
Indices: 4590--4662 Score: 112
Period size: 29 Copynumber: 2.7 Consensus size: 27
4580 ACCAAACCAC
4590 AGTTACCAAGACCACAGTAAACCAGTGAA
1 AGTTACCAAGACCACAGTAAACCA--GAA
4619 AGTTACCAAGACCACAGTAAACCA-AA
1 AGTTACCAAGACCACAGTAAACCAGAA
*
4645 AGTTACCAATACCACAGT
1 AGTTACCAAGACCACAGT
4663 GTAAAACTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
26 19 0.44
29 24 0.56
ACGTcount: A:0.45, C:0.26, G:0.14, T:0.15
Consensus pattern (27 bp):
AGTTACCAAGACCACAGTAAACCAGAA
Left flanking sequence: Indices 4090 -- 4589
CCCCGGATCAACTGTTTTTGGCGGAACATGGCTTCGAGGTGGGTTTGGCGTACTTTTGAATGCGC
TGCTACCATCGGGCTGTATGCAGAGTCCGGGAGCGGCCGAGTCAGAAAAAACGCCTCGCCGGGGG
TGGCCGGAGAGGGGAGGTGGGGGAAGAGGGCTACGAGGTTGGTGGTAGTGGTGGCCGTGGTGGCC
GTGGTAGAGGTGGCAGAGGTCAGCAGACACCGCTGGGTGGGTGGAGGCCCATCGCACTTGTACTC
CCGGGAAAAAGCGGGGAGCAGAAGTGCGGGTGAAAAGTGCTGCCAGGACCAATGGTAGTATGATC
ACCACAGTTTGTATCACCGCTGAACCCCCTACACCACCCCGTGGCGCCTTCCCTTGGCGCCGTCC
ACCCCAGACACTTTCCGTATGGCGCAACCGTCGGAGTCGACGAAGCCCGGAATCCTGCAGACAAC
CCGATTTGCAGCCGTCCGAAAGAGTCAACGAAACCACCAAACCAC
Right flanking sequence: Indices 4663 -- 5162
GTAAAACTAAGAACCCACATTTACTCTTCCCCTCTTCGTCCCGTCACCTAAATCGTTTCTATTCG
TACGTAATGTGCATTAATCTACTCGTCGTCCTCGTCGTCGAGGTCGTCCGCCTCCAAGGTGGCGA
TCTTGGCCTTGGCCTTCTCGATGTTCACCTGGGTCTGCTCCTCCTGCTTGTCCTGCAACGCCGCA
AGCGTCTCCTTCAACACCTTGATGGTGTCGGGCACCTGCTCCTGCGAGGTGGGGAAGGGAATCGA
CAACTCCAGCAACTCGGTGATGATGTCAGGGTCCACGGTGAAGTTCTTGGACTTGCCCTTGGCCT
TCTTGCCCTTCTTCAGCTTCAGGGTGGGCACAAACTCCTCCTGCTTCTTGGACACCACCACCATG
TCGGCGGGCATCTCGACGGTACGGGCAGCCAACTTCAGGGTGGTGAACCCACCGTTCTTCAACGG
GTCCGCCGCCGCGGGCTTGACGTACTCGGGGTCAAAGTACGCCAA
Found at i:6410 original size:11 final size:11
Alignment explanation
Indices: 6367--6428 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 11
6357 GGGTGGAAGG
6367 GGAAGAGATAGT
1 GGAAGAG-TAGT
* *
6379 GGGAGAGTA-C
1 GGAAGAGTAGT
*
6389 GAAAG-GTAGT
1 GGAAGAGTAGT
6399 GGAAGAGTAGT
1 GGAAGAGTAGT
*
6410 GGGAGAGTAGT
1 GGAAGAGTAGT
*
6421 GGGAGAGT
1 GGAAGAGT
6429 GGTAGGAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
9 3 0.07
10 7 0.17
11 25 0.61
12 6 0.15
ACGTcount: A:0.34, C:0.02, G:0.48, T:0.16
Consensus pattern (11 bp):
GGAAGAGTAGT
Left flanking sequence: Indices 5867 -- 6366
CCTGCTGCAACTTGTTGCGCTTGTCCATCACCAGCTGGTCGATCTGCAACTTGGCGATTTCCGCC
GTCAACTTGGCGGACTCGGCGTCCAATTGCTTGATTTCCTGCTGCACCGCCGCCACCTTGGCCTT
GTGGGCGTCGCTGTCGGGGCGCTTGATGTGCTTGCGAGTGCTCTGCGGCGCAGGGGAGCTACCTT
TGTCGGACATGGTAAACGGTTGTGTTGTCCAAAAAATGGAAATTTTTCACTGCGCGTGCGCACGG
GCAGTGGGATCACCACGGCTGCAAGCAGGACACGGCGGGCGGGTGTGGGGGGCGTGAGGGGGGTG
GTGGGGGTGTAGACGCGTTGTAGACGCGGTTGACTTTGTATTGTGGTGTTTACTTTGGTGAANGA
GTTCGGTGGCTACTGATCCGGTAACGTCTCATCCTGACCGTTGAGGCGATGACTCGACGCGATCT
ATTTTCGTGTGAGGGGTGGGTGAATGTAGTGGGGTGGGTGGAAGG
Right flanking sequence: Indices 6429 -- 6928
GGTAGGAGGTAACGCGGAGATAAGCAGTAGTTGTAGAGTAGTGAGTGGTGGGGTACGCGTTCAAC
ACTGTCCGACACGTCTGTAACCGCTAATGCTCAACCGATGGACTCTAGCCTCTCTTGTAATGTTA
CTTTTGACCCTTTGCGCCATTCTGCTGTATTTTATTTTCTCTGGGCCATCCGACCATTTCCCACA
TGAGCCCAGATTGTTCTCCACCATCCCTCGTATAATCGGTTACGTGCCCGCCCGATCCAGTTTCT
TTTCCCGCCTTCTCGCGCTATACGACGAGTGCGAGTTTAACCTGGAAAAAGTCCGTATATCTACC
CCCTGTTAGCATGACCGACTACGAGACCGTGGTGAAGAACCTCAAAGCCGAGGACATTGTCGCCA
AGTGGGACGAAGTGACCCCGTTGGCCGAGGTGCTGGGCATCGCCCGCTCCGAGCTGAGCTCAAAG
GAGGACCTCGCGTTGTTTGCCGGGCACGACGCCGAGCAGATCAAG
Found at i:6436 original size:22 final size:22
Alignment explanation
Indices: 6394--6436 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6384 AGTACGAAAG
*
6394 GTAGTGGAAGAGTAGTGGGAGA
1 GTAGTGGAAGAGTAGTAGGAGA
* *
6416 GTAGTGGGAGAGTGGTAGGAG
1 GTAGTGGAAGAGTAGTAGGAG
6437 GTAACGCGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.53, T:0.19
Consensus pattern (22 bp):
GTAGTGGAAGAGTAGTAGGAGA
Left flanking sequence: Indices 5894 -- 6393
TCACCAGCTGGTCGATCTGCAACTTGGCGATTTCCGCCGTCAACTTGGCGGACTCGGCGTCCAAT
TGCTTGATTTCCTGCTGCACCGCCGCCACCTTGGCCTTGTGGGCGTCGCTGTCGGGGCGCTTGAT
GTGCTTGCGAGTGCTCTGCGGCGCAGGGGAGCTACCTTTGTCGGACATGGTAAACGGTTGTGTTG
TCCAAAAAATGGAAATTTTTCACTGCGCGTGCGCACGGGCAGTGGGATCACCACGGCTGCAAGCA
GGACACGGCGGGCGGGTGTGGGGGGCGTGAGGGGGGTGGTGGGGGTGTAGACGCGTTGTAGACGC
GGTTGACTTTGTATTGTGGTGTTTACTTTGGTGAANGAGTTCGGTGGCTACTGATCCGGTAACGT
CTCATCCTGACCGTTGAGGCGATGACTCGACGCGATCTATTTTCGTGTGAGGGGTGGGTGAATGT
AGTGGGGTGGGTGGAAGGGGAAGAGATAGTGGGAGAGTACGAAAG
Right flanking sequence: Indices 6437 -- 6936
GTAACGCGGAGATAAGCAGTAGTTGTAGAGTAGTGAGTGGTGGGGTACGCGTTCAACACTGTCCG
ACACGTCTGTAACCGCTAATGCTCAACCGATGGACTCTAGCCTCTCTTGTAATGTTACTTTTGAC
CCTTTGCGCCATTCTGCTGTATTTTATTTTCTCTGGGCCATCCGACCATTTCCCACATGAGCCCA
GATTGTTCTCCACCATCCCTCGTATAATCGGTTACGTGCCCGCCCGATCCAGTTTCTTTTCCCGC
CTTCTCGCGCTATACGACGAGTGCGAGTTTAACCTGGAAAAAGTCCGTATATCTACCCCCTGTTA
GCATGACCGACTACGAGACCGTGGTGAAGAACCTCAAAGCCGAGGACATTGTCGCCAAGTGGGAC
GAAGTGACCCCGTTGGCCGAGGTGCTGGGCATCGCCCGCTCCGAGCTGAGCTCAAAGGAGGACCT
CGCGTTGTTTGCCGGGCACGACGCCGAGCAGATCAAGTTGATGGA
Found at i:7804 original size:51 final size:52
Alignment explanation
Indices: 7728--7845 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 52
7718 GCCCGATGCT
* *
7728 TACCAGTTAA-TGGGTATGTGCAAGGTATTAATAGTCAAAGGA-GACTTGTTG
1 TACCAG-TAACTGGGTATGTGCAAGGTATTAATAGTCAAAGGATGACTGGGTG
* ** **
7779 TACCAGTAACTGGGTATGTGCAAGGTGTTGGTAGTCATGGGATGACTGGGTG
1 TACCAGTAACTGGGTATGTGCAAGGTATTAATAGTCAAAGGATGACTGGGTG
7831 TACCAGTAACTGGGT
1 TACCAGTAACTGGGT
7846 TGTACCAGTG
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
50 3 0.05
51 33 0.57
52 22 0.38
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (52 bp):
TACCAGTAACTGGGTATGTGCAAGGTATTAATAGTCAAAGGATGACTGGGTG
Left flanking sequence: Indices 7228 -- 7727
GAACGCGGCTGTGCGCAAGTTGGAGCACGAATTGGGCATTCCCCCGGCGGAGGTGCCCGTGCTGA
GCTTCGAGTTCTTGACGCGGATCCACTACATGCTGCCTTCTGGCGGCGAGGACTCCAAGTGGGGC
GAGCACGAGATCGACTACATTTTGATCCAGCAGTGTGCCAACGACATCACCGTCAACGCCAACTA
CAACGAGGTGCGCGACTTCAAGTGGGTGCTGGAGGCCGAGCTCAAGGCGATGTTTGCCGACGACT
CGCTTGTGTTTACCCCGTGGTTCAAGTTGATCTGCGAGAAGTTCTTGTTCAAGTGGTGGGCCAAC
CTCAAGGACTTGGACCAGTTTAAGGACGACAGCATCCACAGAATGTTGTAATATTTATTCATAGA
CAATAAGACAATGAGAAGGTGGATGAGGCAGTGGAGGGTGGAGGGGTAAATGGAATTGTAGTGTA
TTGGTTCGAGACGATGTACTATGAGTGGGCTAACGGCCCGATGCT
Right flanking sequence: Indices 7846 -- 8345
TGTACCAGTGACAAATCCGCACTAGTTTTGTACTAGTTGTCGTACAACTGGGAGTGCTAGTGCCA
AAATTGTACTAGTTGTGTCGTACTAATGGCTGCGTCGTAGTGGCTGCGTCGTAGTGGCTGTGTCG
TAGTGGCTGTGTTGAATAGTGGCTGAAACCGCAGTTATGTTAGACAAGAACAAAGTCTCACCAGT
GACATGTTGTACACTCATCCATTATTCCAACCCACACCGCCTATCTCTTCTCAAACTTCGCATGC
AACTCCTCGTACGCCTTTCTCATCTGCACATACCCAAGATGGATCTTCCCCATCAAGTGGTCGGC
AATACGCCTGTCAGAGTCCAACCGCGACAAGTAGGCCCCACACCCCTCGCACACCTGCAACTTCT
GCTGTGACGTTTGGCCCACGTTCTCGGCAAGATTGCGTGCGGTCTCAAACAACTGGGCCCGCTCC
GCCTGGCGCCGGTCGAGCTCGGCCCCCTGTCTCACCGCCCCGACA
Found at i:7844 original size:16 final size:17
Alignment explanation
Indices: 7823--7854 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7813 TCATGGGATG
7823 ACTGGG-TGTACCAGTA
1 ACTGGGTTGTACCAGTA
7839 ACTGGGTTGTACCAGT
1 ACTGGGTTGTACCAGT
7855 GACAAATCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (17 bp):
ACTGGGTTGTACCAGTA
Left flanking sequence: Indices 7323 -- 7822
TGCTGCCTTCTGGCGGCGAGGACTCCAAGTGGGGCGAGCACGAGATCGACTACATTTTGATCCAG
CAGTGTGCCAACGACATCACCGTCAACGCCAACTACAACGAGGTGCGCGACTTCAAGTGGGTGCT
GGAGGCCGAGCTCAAGGCGATGTTTGCCGACGACTCGCTTGTGTTTACCCCGTGGTTCAAGTTGA
TCTGCGAGAAGTTCTTGTTCAAGTGGTGGGCCAACCTCAAGGACTTGGACCAGTTTAAGGACGAC
AGCATCCACAGAATGTTGTAATATTTATTCATAGACAATAAGACAATGAGAAGGTGGATGAGGCA
GTGGAGGGTGGAGGGGTAAATGGAATTGTAGTGTATTGGTTCGAGACGATGTACTATGAGTGGGC
TAACGGCCCGATGCTTACCAGTTAATGGGTATGTGCAAGGTATTAATAGTCAAAGGAGACTTGTT
GTACCAGTAACTGGGTATGTGCAAGGTGTTGGTAGTCATGGGATG
Right flanking sequence: Indices 7855 -- 8354
GACAAATCCGCACTAGTTTTGTACTAGTTGTCGTACAACTGGGAGTGCTAGTGCCAAAATTGTAC
TAGTTGTGTCGTACTAATGGCTGCGTCGTAGTGGCTGCGTCGTAGTGGCTGTGTCGTAGTGGCTG
TGTTGAATAGTGGCTGAAACCGCAGTTATGTTAGACAAGAACAAAGTCTCACCAGTGACATGTTG
TACACTCATCCATTATTCCAACCCACACCGCCTATCTCTTCTCAAACTTCGCATGCAACTCCTCG
TACGCCTTTCTCATCTGCACATACCCAAGATGGATCTTCCCCATCAAGTGGTCGGCAATACGCCT
GTCAGAGTCCAACCGCGACAAGTAGGCCCCACACCCCTCGCACACCTGCAACTTCTGCTGTGACG
TTTGGCCCACGTTCTCGGCAAGATTGCGTGCGGTCTCAAACAACTGGGCCCGCTCCGCCTGGCGC
CGGTCGAGCTCGGCCCCCTGTCTCACCGCCCCGACAATGTCGCCC
Found at i:7987 original size:14 final size:14
Alignment explanation
Indices: 7937--7984 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
7927 GTCGTACTAA
7937 TGGCTGCGTCGTAG
1 TGGCTGCGTCGTAG
7951 TGGCTGCGTCGTAG
1 TGGCTGCGTCGTAG
*
7965 TGGCTGTGTCGTAG
1 TGGCTGCGTCGTAG
7979 TGGCTG
1 TGGCTG
7985 TGTTGAATAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.06, C:0.19, G:0.44, T:0.31
Consensus pattern (14 bp):
TGGCTGCGTCGTAG
Left flanking sequence: Indices 7437 -- 7936
ACTTCAAGTGGGTGCTGGAGGCCGAGCTCAAGGCGATGTTTGCCGACGACTCGCTTGTGTTTACC
CCGTGGTTCAAGTTGATCTGCGAGAAGTTCTTGTTCAAGTGGTGGGCCAACCTCAAGGACTTGGA
CCAGTTTAAGGACGACAGCATCCACAGAATGTTGTAATATTTATTCATAGACAATAAGACAATGA
GAAGGTGGATGAGGCAGTGGAGGGTGGAGGGGTAAATGGAATTGTAGTGTATTGGTTCGAGACGA
TGTACTATGAGTGGGCTAACGGCCCGATGCTTACCAGTTAATGGGTATGTGCAAGGTATTAATAG
TCAAAGGAGACTTGTTGTACCAGTAACTGGGTATGTGCAAGGTGTTGGTAGTCATGGGATGACTG
GGTGTACCAGTAACTGGGTTGTACCAGTGACAAATCCGCACTAGTTTTGTACTAGTTGTCGTACA
ACTGGGAGTGCTAGTGCCAAAATTGTACTAGTTGTGTCGTACTAA
Right flanking sequence: Indices 7985 -- 8484
TGTTGAATAGTGGCTGAAACCGCAGTTATGTTAGACAAGAACAAAGTCTCACCAGTGACATGTTG
TACACTCATCCATTATTCCAACCCACACCGCCTATCTCTTCTCAAACTTCGCATGCAACTCCTCG
TACGCCTTTCTCATCTGCACATACCCAAGATGGATCTTCCCCATCAAGTGGTCGGCAATACGCCT
GTCAGAGTCCAACCGCGACAAGTAGGCCCCACACCCCTCGCACACCTGCAACTTCTGCTGTGACG
TTTGGCCCACGTTCTCGGCAAGATTGCGTGCGGTCTCAAACAACTGGGCCCGCTCCGCCTGGCGC
CGGTCGAGCTCGGCCCCCTGTCTCACCGCCCCGACAATGTCGCCCGCCGCCACGAGACACTCGAT
CTCCTGGGCCATGAGCGCAATGTTGGAGTCGGCCACGTCGAGCTCGCGCATCGCCGCAGCAATCT
TCTCCTTTTCCTCAGGCGTGTGCTCCAACCGCTTGTGCGCCACCG
Found at i:8885 original size:17 final size:17
Alignment explanation
Indices: 8859--8937 Score: 70
Period size: 17 Copynumber: 4.6 Consensus size: 17
8849 AGGTGGATTG
8859 GGATAAGGTGGAATGGT
1 GGATAAGGTGGAATGGT
* *
8876 GGATAGGGTGGGATGGT
1 GGATAAGGTGGAATGGT
* * * *
8893 AGAAAAGGTGTAACGGT
1 GGATAAGGTGGAATGGT
*
8910 GGATAAGGTGAAAATGGT
1 GGATAAGGTG-GAATGGT
*
8928 AGA-AAGGTGG
1 GGATAAGGTGG
8938 TAAGGGTGAA
Statistics
Matches: 47, Mismatches: 14, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
17 40 0.85
18 7 0.15
ACGTcount: A:0.33, C:0.01, G:0.46, T:0.20
Consensus pattern (17 bp):
GGATAAGGTGGAATGGT
Left flanking sequence: Indices 8359 -- 8858
CCACGAGACACTCGATCTCCTGGGCCATGAGCGCAATGTTGGAGTCGGCCACGTCGAGCTCGCGC
ATCGCCGCAGCAATCTTCTCCTTTTCCTCAGGCGTGTGCTCCAACCGCTTGTGCGCCACCGCGAT
CTGGGTGTCCAAGTCCTGGATGTACTGGCGGAGGTGTTTGTAGTAGTCGTACTCGAACTCGGGGT
AGCGGCGGCCCTGGGCCACGCGCTGCTGGTACTCCAACCGGTGTTTCTCGAGGTGGAGCTGGGGA
CACTTTCCAAGGTCCTGTTTGGTGCCGACAAAGAGGTCGTGGGGACACGTTCCGACGAGGAACGA
CTTGCACACCCGCAGAGAGGTGAAGTCTGTGGGTGGACGACCGCGGCGGCCGTCCAGATGGAGCG
CCTCGCGGCCCATGAGCTGCTCGATGGCCTGGCGCTGGAGGTCGGCCATGGTGGTGCAGAGTGTA
TATAGGGTGAGATGTGAGATAGGTGAGAAGTGGTCAGGTGGATTG
Right flanking sequence: Indices 8938 -- 9437
TAAGGGTGAAAACGTGTTCGATGGTGATAGATACAGACCATAGCTACCGCCAAGATATTAACACT
ACTCTAGTCTAAGCTCTCCGCCACAGTTATGGCGGGCGCCAACAATTCTATTAATCATGTTGCCA
TAACGCAAATCTATTAATCGCAGGCTTATCGCTAGCCAACGTGTTCGTTACCTAGACACCCTGAC
ACGCCTTGGGTGGCCTGACCTCGTAATCTTCTTGACAACCTTCTCCAACGGCAGCCAGGGCACGT
ACCCTTTTGGTTACCGCATGATTTCGTTTCACCCATGACCGCCGATCCCCCAACAACCACCCCGC
CAGCTACCACACCTGCTACCCCTCTTTGCTTCCACCCCACTGCCCCGCGCTCCAAAGCCCGCGGC
TGATAACCTGCACGTGAGCCCATCGATTGCAGCTGTCTCGAAAAGGACCATTGTGTGCGCACGTC
AGAGCCCCTCCTCTTCTGAGCCGGATGTCGACCCTAAAAATGCGG
Found at i:8901 original size:34 final size:34
Alignment explanation
Indices: 8863--8937 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
8853 GGATTGGGAT
* * **
8863 AAGGTGGAATGGTGGATAGGGTG-GGATGGTAGAA
1 AAGGTGGAACGGTGGATAAGGTGAAAATGGTAG-A
*
8897 AAGGTGTAACGGTGGATAAGGTGAAAATGGTAGA
1 AAGGTGGAACGGTGGATAAGGTGAAAATGGTAGA
8931 AAGGTGG
1 AAGGTGG
8938 TAAGGGTGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 27 0.79
35 7 0.21
ACGTcount: A:0.33, C:0.01, G:0.45, T:0.20
Consensus pattern (34 bp):
AAGGTGGAACGGTGGATAAGGTGAAAATGGTAGA
Left flanking sequence: Indices 8363 -- 8862
GAGACACTCGATCTCCTGGGCCATGAGCGCAATGTTGGAGTCGGCCACGTCGAGCTCGCGCATCG
CCGCAGCAATCTTCTCCTTTTCCTCAGGCGTGTGCTCCAACCGCTTGTGCGCCACCGCGATCTGG
GTGTCCAAGTCCTGGATGTACTGGCGGAGGTGTTTGTAGTAGTCGTACTCGAACTCGGGGTAGCG
GCGGCCCTGGGCCACGCGCTGCTGGTACTCCAACCGGTGTTTCTCGAGGTGGAGCTGGGGACACT
TTCCAAGGTCCTGTTTGGTGCCGACAAAGAGGTCGTGGGGACACGTTCCGACGAGGAACGACTTG
CACACCCGCAGAGAGGTGAAGTCTGTGGGTGGACGACCGCGGCGGCCGTCCAGATGGAGCGCCTC
GCGGCCCATGAGCTGCTCGATGGCCTGGCGCTGGAGGTCGGCCATGGTGGTGCAGAGTGTATATA
GGGTGAGATGTGAGATAGGTGAGAAGTGGTCAGGTGGATTGGGAT
Right flanking sequence: Indices 8938 -- 9437
TAAGGGTGAAAACGTGTTCGATGGTGATAGATACAGACCATAGCTACCGCCAAGATATTAACACT
ACTCTAGTCTAAGCTCTCCGCCACAGTTATGGCGGGCGCCAACAATTCTATTAATCATGTTGCCA
TAACGCAAATCTATTAATCGCAGGCTTATCGCTAGCCAACGTGTTCGTTACCTAGACACCCTGAC
ACGCCTTGGGTGGCCTGACCTCGTAATCTTCTTGACAACCTTCTCCAACGGCAGCCAGGGCACGT
ACCCTTTTGGTTACCGCATGATTTCGTTTCACCCATGACCGCCGATCCCCCAACAACCACCCCGC
CAGCTACCACACCTGCTACCCCTCTTTGCTTCCACCCCACTGCCCCGCGCTCCAAAGCCCGCGGC
TGATAACCTGCACGTGAGCCCATCGATTGCAGCTGTCTCGAAAAGGACCATTGTGTGCGCACGTC
AGAGCCCCTCCTCTTCTGAGCCGGATGTCGACCCTAAAAATGCGG
Found at i:16271 original size:12 final size:12
Alignment explanation
Indices: 16229--16273 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
16219 GCCACGCCCA
* *
16229 TCGTATGTTGTT
1 TCGTATGCTGCT
* *
16241 TTGTATACTGCT
1 TCGTATGCTGCT
16253 TCGTATGCTGCT
1 TCGTATGCTGCT
16265 TCGTATGCT
1 TCGTATGCT
16274 CCTCCTTATG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.11, C:0.18, G:0.22, T:0.49
Consensus pattern (12 bp):
TCGTATGCTGCT
Left flanking sequence: Indices 15729 -- 16228
AATCTGTCCGCTGGCGGTGGATTTGCTACAATATTTTTCCGTCGCCATGGACACCGTTGGTGGCA
TTTTCCTACAAAAGCTACGTGCATAGACAATGGGCATTACCCGCGGAGCCCTCCCCGGTGGCAGT
AAAAAGACCATGTGGTTAATGGTCCAGCATATGCAGCTTCCCCTCCTGGTGTCCATCGTGGGAAT
CTGGGGTCCAGAAGCACGGTTAGACCTTGATTTCGGCATCAGGCGATTCTTGTTCCGACTGCATA
AATTTTCCTAATCGAGATGGGCTTAACGGTGGGCAGCGTCACCAGCCACCGAGTGCACCTGCCGT
CGCCTCAACCTGCCAAGCCCGAGGTCACTCGCCACCGACGCGGCCAACGGTTGAGCCGAGCCTGA
CCACGAGTTTAGTCACGGAGTTGCACATTTACGAGGTGAAACGTATGACTAATATTGATAAGCGT
AAGCATTACGAAATATGAGTAATATCATGCGGGCTGCCACGCCCA
Right flanking sequence: Indices 16274 -- 16773
CCTCCTTATGCTCCTCTACTCTGTTCCAGTTTGTGTCCTCTTATATTACAAACCCATTCCCATAT
GTCGTGATTAGTAGCCCTCTTTGCCTACAGTAAAGCTCCACCCGTCGTCTGGGGAGAGATCGAGG
GAAAGACCCTCCACCGTAAGCCCCTGGCCCGGGTTAAAGTCAAGCGGAGGGATGTCCTGGCTCAA
CGCCATGTCGTAGATGTCCTGGTGGGGATCCGCCAACCGCTCGGGCGCCACCGCTAGCGGTAGCG
CAGGCCCAAGCACGGCGTCGATGTCGCCATTGGCAAGCGCCTGGTGCACGCCGTTGCTGTGGAAA
TGCACCGGCTTGTGCACCCCCAATTGGGGGCCGATCTTGGGCGAGTAGGCGCCCAGGCGGTTCAG
CGACAGCCGTCGCACCGTGGGCGGCGCCGTGACGATGGCAGCAGCGTCGGCGGCCGCCATCTGTG
TCAGCTGTAGCAGCGACGACAGCCCGCGGCGGTGGTGGGGCAGAT
Found at i:26244 original size:13 final size:13
Alignment explanation
Indices: 26228--26316 Score: 82
Period size: 14 Copynumber: 7.1 Consensus size: 13
26218 CCCTTGCAAG
26228 GGTGCCCATGCTA
1 GGTGCCCATGCTA
*
26241 GGTGCCCATGGTA
1 GGTGCCCATGCTA
*
26254 GGGTGCCCATGTTA
1 -GGTGCCCATGCTA
*
26268 GAGTGCCCATGTTA
1 G-GTGCCCATGCTA
26282 GAGTG--C---CTA
1 G-GTGCCCATGCTA
26291 GGTGCCCATGCTA
1 GGTGCCCATGCTA
26304 GGTG-CCATGCTA
1 GGTGCCCATGCTA
26316 G
1 G
26317 TTTTTCTCGT
Statistics
Matches: 66, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
8 3 0.05
9 3 0.05
10 1 0.02
12 10 0.15
13 20 0.30
14 29 0.44
ACGTcount: A:0.17, C:0.25, G:0.34, T:0.25
Consensus pattern (13 bp):
GGTGCCCATGCTA
Left flanking sequence: Indices 25728 -- 26227
GCTTGGGCCCACCCGGCTCTTTGCCAACTACCAGTGGCTCCCCTACGGGTTTGCCGCGGGGCTCG
TGGGCCCGCTCGCGATCTATGCCCTCCACCAGCGGTACCCGCACGCGGGCTTCAACGTGTGGAAC
ACCACCGTGTTCTTCCTGAGCATGCTGCGGTTCTACGGCAACATCCTGACGGGGTACCTCTCCAA
GTTTATCGGAGGCACCGTCACCATGTTCTGGGCCCAGCGGTACCGCCACCGGGTGTGGAAGGACT
ACAACTACATCGTGGCCGCGGCGTGCGACACCGGGCTCAACCTCGCGGTGCTCGCGCTCTTTGTG
GCGGTGTCGGTGTTCCCGCAGCTACGGATGCCTCACTGGTGGGGCAACAATCCCGACAGCATCGA
GCGGTGCTTTGCATTATAGAGTTATAGACCAGTCAATAGACCGTAATGGGGTGCCCGTGCTAGGG
TGCCCGTGTTAGTTTGGAGTGCCCATAATAAGGTTCCCTTGCAAG
Right flanking sequence: Indices 26317 -- 26816
TTTTTCTCGTCCTTCTTCGCCTGTTCCACCAGCGCCTGGCGCTCCTGGTACTCGGACAGCGGCTG
CCATTTGCGGGTGGTCTTGATCTCGTCCAAGTTGTACCCGGGCACCCGCACGCCCCAGTTGCGCT
CGAGATTGAGCTGCACGTCCTTCATGTCGATCAACTCCACCTTGCGGTGCTTGGCGAGCCGGCAG
GCAAACGAGGTGACCTGGGTGACAAACTCGTCCGCCAAGTCGACCAAAAGGTCCTCCACGTCGCC
GTCCATGAGCGGAGCGCCCCGCACGACGTTGGCCTCGCCCTCGTCCACGCTCATCAGCGTCACCA
CCTCCTGGAGCTTGCGCTTCTGCAACATGCGGCCCAGCGCGTCCGGCTGGTAGTTGGGGTAGAAA
TCGGGGTACATTGGCAGCTGGCGCATGCCGTAGAACTGCTGCTGCGGCGGTGCCCGTGGCATTGG
CCGCATCGCCGTCACCGCTGTCGGGGTGCGGACCTGGGGAGCGGG
Found at i:26256 original size:27 final size:28
Alignment explanation
Indices: 26226--26288 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
26216 TTCCCTTGCA
26226 AGGGTGCCCATGCTAG-GTGCCCATGGT
1 AGGGTGCCCATGCTAGAGTGCCCATGGT
* *
26253 AGGGTGCCCATGTTAGAGTGCCCATGTT
1 AGGGTGCCCATGCTAGAGTGCCCATGGT
*
26281 AGAGTGCC
1 AGGGTGCC
26289 TAGGTGCCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 15 0.47
28 17 0.53
ACGTcount: A:0.17, C:0.24, G:0.35, T:0.24
Consensus pattern (28 bp):
AGGGTGCCCATGCTAGAGTGCCCATGGT
Left flanking sequence: Indices 25726 -- 26225
GTGCTTGGGCCCACCCGGCTCTTTGCCAACTACCAGTGGCTCCCCTACGGGTTTGCCGCGGGGCT
CGTGGGCCCGCTCGCGATCTATGCCCTCCACCAGCGGTACCCGCACGCGGGCTTCAACGTGTGGA
ACACCACCGTGTTCTTCCTGAGCATGCTGCGGTTCTACGGCAACATCCTGACGGGGTACCTCTCC
AAGTTTATCGGAGGCACCGTCACCATGTTCTGGGCCCAGCGGTACCGCCACCGGGTGTGGAAGGA
CTACAACTACATCGTGGCCGCGGCGTGCGACACCGGGCTCAACCTCGCGGTGCTCGCGCTCTTTG
TGGCGGTGTCGGTGTTCCCGCAGCTACGGATGCCTCACTGGTGGGGCAACAATCCCGACAGCATC
GAGCGGTGCTTTGCATTATAGAGTTATAGACCAGTCAATAGACCGTAATGGGGTGCCCGTGCTAG
GGTGCCCGTGTTAGTTTGGAGTGCCCATAATAAGGTTCCCTTGCA
Right flanking sequence: Indices 26289 -- 26788
TAGGTGCCCATGCTAGGTGCCATGCTAGTTTTTCTCGTCCTTCTTCGCCTGTTCCACCAGCGCCT
GGCGCTCCTGGTACTCGGACAGCGGCTGCCATTTGCGGGTGGTCTTGATCTCGTCCAAGTTGTAC
CCGGGCACCCGCACGCCCCAGTTGCGCTCGAGATTGAGCTGCACGTCCTTCATGTCGATCAACTC
CACCTTGCGGTGCTTGGCGAGCCGGCAGGCAAACGAGGTGACCTGGGTGACAAACTCGTCCGCCA
AGTCGACCAAAAGGTCCTCCACGTCGCCGTCCATGAGCGGAGCGCCCCGCACGACGTTGGCCTCG
CCCTCGTCCACGCTCATCAGCGTCACCACCTCCTGGAGCTTGCGCTTCTGCAACATGCGGCCCAG
CGCGTCCGGCTGGTAGTTGGGGTAGAAATCGGGGTACATTGGCAGCTGGCGCATGCCGTAGAACT
GCTGCTGCGGCGGTGCCCGTGGCATTGGCCGCATCGCCGTCACCG
Found at i:26260 original size:14 final size:14
Alignment explanation
Indices: 26226--26288 Score: 83
Period size: 14 Copynumber: 4.6 Consensus size: 14
26216 TTCCCTTGCA
*
26226 AGGGTGCCCATGCT
1 AGGGTGCCCATGTT
*
26240 A-GGTGCCCATGGT
1 AGGGTGCCCATGTT
26253 AGGGTGCCCATGTT
1 AGGGTGCCCATGTT
*
26267 AGAGTGCCCATGTT
1 AGGGTGCCCATGTT
*
26281 AGAGTGCC
1 AGGGTGCC
26289 TAGGTGCCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
13 12 0.27
14 33 0.73
ACGTcount: A:0.17, C:0.24, G:0.35, T:0.24
Consensus pattern (14 bp):
AGGGTGCCCATGTT
Left flanking sequence: Indices 25726 -- 26225
GTGCTTGGGCCCACCCGGCTCTTTGCCAACTACCAGTGGCTCCCCTACGGGTTTGCCGCGGGGCT
CGTGGGCCCGCTCGCGATCTATGCCCTCCACCAGCGGTACCCGCACGCGGGCTTCAACGTGTGGA
ACACCACCGTGTTCTTCCTGAGCATGCTGCGGTTCTACGGCAACATCCTGACGGGGTACCTCTCC
AAGTTTATCGGAGGCACCGTCACCATGTTCTGGGCCCAGCGGTACCGCCACCGGGTGTGGAAGGA
CTACAACTACATCGTGGCCGCGGCGTGCGACACCGGGCTCAACCTCGCGGTGCTCGCGCTCTTTG
TGGCGGTGTCGGTGTTCCCGCAGCTACGGATGCCTCACTGGTGGGGCAACAATCCCGACAGCATC
GAGCGGTGCTTTGCATTATAGAGTTATAGACCAGTCAATAGACCGTAATGGGGTGCCCGTGCTAG
GGTGCCCGTGTTAGTTTGGAGTGCCCATAATAAGGTTCCCTTGCA
Right flanking sequence: Indices 26289 -- 26788
TAGGTGCCCATGCTAGGTGCCATGCTAGTTTTTCTCGTCCTTCTTCGCCTGTTCCACCAGCGCCT
GGCGCTCCTGGTACTCGGACAGCGGCTGCCATTTGCGGGTGGTCTTGATCTCGTCCAAGTTGTAC
CCGGGCACCCGCACGCCCCAGTTGCGCTCGAGATTGAGCTGCACGTCCTTCATGTCGATCAACTC
CACCTTGCGGTGCTTGGCGAGCCGGCAGGCAAACGAGGTGACCTGGGTGACAAACTCGTCCGCCA
AGTCGACCAAAAGGTCCTCCACGTCGCCGTCCATGAGCGGAGCGCCCCGCACGACGTTGGCCTCG
CCCTCGTCCACGCTCATCAGCGTCACCACCTCCTGGAGCTTGCGCTTCTGCAACATGCGGCCCAG
CGCGTCCGGCTGGTAGTTGGGGTAGAAATCGGGGTACATTGGCAGCTGGCGCATGCCGTAGAACT
GCTGCTGCGGCGGTGCCCGTGGCATTGGCCGCATCGCCGTCACCG
Found at i:30926 original size:9 final size:9
Alignment explanation
Indices: 30865--30925 Score: 79
Period size: 9 Copynumber: 6.9 Consensus size: 9
30855 CCCACCCGTT
30865 TACCACCTC
1 TACCACCTC
*
30874 TAACACCTC
1 TACCACCTC
30883 TACCACCTC
1 TACCACCTC
*
30892 TACCACTTC
1 TACCACCTC
*
30901 CACCACC-C
1 TACCACCTC
*
30909 TACCACCTT
1 TACCACCTC
30918 TACCACCT
1 TACCACCT
30926 TCCACCACCA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
8 7 0.16
9 37 0.84
ACGTcount: A:0.25, C:0.52, G:0.00, T:0.23
Consensus pattern (9 bp):
TACCACCTC
Left flanking sequence: Indices 30365 -- 30864
GGCGTCGTCCTTGGTGCAGCTGCGGAGGGCCAGGCGGATGCGGGCGCTGGGGTCGGCCAACGGCT
TGTCTGAGGGGAAGAACGGCGCGAGCCAGTCGAGGGCCACGTCGATGTCGTTGTCGTTTTCGCGG
CGGTCGTGCGAGAGCTCGCCAAGGTCCGGCAACGGGATGATTGACCGGATGACCTCTGGCGAGAG
CATGGAGAAAGGATGGGAGGTAGTAGATAGGAGAGGTGAACTGGTGGTGGAGGTAAACAGATGGT
GCGGCTTGCGCATAAAAAATACGGAGGTGTCACGGAGAATGTGGGAGGAGGCCGTAGACGAGAGG
GCGTAGACGAGGAGCGGAGGTTGTGAGCAGTGGATCGAGGCCGTAGAAGAAGAAATGGTTAAATT
GATGGTTGGTGAATAGAAAATAAGCACGTGGTGGGTATGAACTATCGACCAATTAGCCACCACCT
GTCCCGCTACGTAGACACCACCACCCGTTTGGGACCCCACCCGTT
Right flanking sequence: Indices 30926 -- 31425
TCCACCACCACCTTCCACCACGCACTGCGAAATTTCCCCAGTGCACCTCAACCACCCATGCCATT
GTTCAAGAGCGACAGGTTCGTCAGCCAGTTCACCGAGGTCACCGGGCTGACAACGGCGGTGGCCA
AGCAGTACCACGACAAATACAAGCTGGTGGACGACGCCATCCAGGCCTACTTCGACGACTCCCAC
TGCAAAAAGAAGTTCAAGCCCAGCCGCGAGGCCGCACTGTTGTTTGACACCTACCGCGATCCCGA
GCACCCGGAGCAGATCGGCATCGACGGCACGTTGGCGATGCTCGGCGACCTCGCCATCGAGCCCG
AGGACCCGCGGGCGCTCATGCTCGCCTACCTCCTCGCGCTGCCGCAGATGGGGGTGTTCACCAAG
CACGAGTTCCTCGAGGCGGTGACCGCGGCCCAGGTGCTGTCGCTAGCAGAGCTCAAGAAGCACGT
CGACGGGTACGCGGCCCAGGTGGCGCGGGACCCCGCCGAGTTCAA
Found at i:30937 original size:13 final size:13
Alignment explanation
Indices: 30919--30946 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
30909 TACCACCTTT
30919 ACCACCTTCCACC
1 ACCACCTTCCACC
30932 ACCACCTTCCACC
1 ACCACCTTCCACC
30945 AC
1 AC
30947 GCACTGCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.61, G:0.00, T:0.14
Consensus pattern (13 bp):
ACCACCTTCCACC
Left flanking sequence: Indices 30419 -- 30918
GGCCAACGGCTTGTCTGAGGGGAAGAACGGCGCGAGCCAGTCGAGGGCCACGTCGATGTCGTTGT
CGTTTTCGCGGCGGTCGTGCGAGAGCTCGCCAAGGTCCGGCAACGGGATGATTGACCGGATGACC
TCTGGCGAGAGCATGGAGAAAGGATGGGAGGTAGTAGATAGGAGAGGTGAACTGGTGGTGGAGGT
AAACAGATGGTGCGGCTTGCGCATAAAAAATACGGAGGTGTCACGGAGAATGTGGGAGGAGGCCG
TAGACGAGAGGGCGTAGACGAGGAGCGGAGGTTGTGAGCAGTGGATCGAGGCCGTAGAAGAAGAA
ATGGTTAAATTGATGGTTGGTGAATAGAAAATAAGCACGTGGTGGGTATGAACTATCGACCAATT
AGCCACCACCTGTCCCGCTACGTAGACACCACCACCCGTTTGGGACCCCACCCGTTTACCACCTC
TAACACCTCTACCACCTCTACCACTTCCACCACCCTACCACCTTT
Right flanking sequence: Indices 30947 -- 31446
GCACTGCGAAATTTCCCCAGTGCACCTCAACCACCCATGCCATTGTTCAAGAGCGACAGGTTCGT
CAGCCAGTTCACCGAGGTCACCGGGCTGACAACGGCGGTGGCCAAGCAGTACCACGACAAATACA
AGCTGGTGGACGACGCCATCCAGGCCTACTTCGACGACTCCCACTGCAAAAAGAAGTTCAAGCCC
AGCCGCGAGGCCGCACTGTTGTTTGACACCTACCGCGATCCCGAGCACCCGGAGCAGATCGGCAT
CGACGGCACGTTGGCGATGCTCGGCGACCTCGCCATCGAGCCCGAGGACCCGCGGGCGCTCATGC
TCGCCTACCTCCTCGCGCTGCCGCAGATGGGGGTGTTCACCAAGCACGAGTTCCTCGAGGCGGTG
ACCGCGGCCCAGGTGCTGTCGCTAGCAGAGCTCAAGAAGCACGTCGACGGGTACGCGGCCCAGGT
GGCGCGGGACCCCGCCGAGTTCAAGCGGCTCTACGCCTACACGTT
Found at i:31797 original size:43 final size:45
Alignment explanation
Indices: 31730--31818 Score: 146
Period size: 43 Copynumber: 2.0 Consensus size: 45
31720 GTACGTCGAG
31730 TACCTCCGCGAGAACGGGTTGCTAGAATAGGGTTAATGTCA-AATT
1 TACCTCCGC-AGAACGGGTTGCTAGAATAGGGTTAATGTCACAATT
*
31775 TACCTCCGC-GATCGGGTTGCTAGAATAGGGTTAATGTCACAATT
1 TACCTCCGCAGAACGGGTTGCTAGAATAGGGTTAATGTCACAATT
31819 ATGTCTATAC
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 29 0.69
44 4 0.10
45 9 0.21
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (45 bp):
TACCTCCGCAGAACGGGTTGCTAGAATAGGGTTAATGTCACAATT
Left flanking sequence: Indices 31230 -- 31729
GCGACCTCGCCATCGAGCCCGAGGACCCGCGGGCGCTCATGCTCGCCTACCTCCTCGCGCTGCCG
CAGATGGGGGTGTTCACCAAGCACGAGTTCCTCGAGGCGGTGACCGCGGCCCAGGTGCTGTCGCT
AGCAGAGCTCAAGAAGCACGTCGACGGGTACGCGGCCCAGGTGGCGCGGGACCCCGCCGAGTTCA
AGCGGCTCTACGCCTACACGTTCGGGTTCTTGATGGAGGTGCCCAACCAGAAGTTGCTTGCCGGC
GACACCGCGTGCGACTACTGGCGGTTGCTCTGGCCGCTCGTGGTGACGGACCCCGCGGCGTTGGC
GCGGTTGGACCAGTGGTACACGTTTGTCACCACCGAGTGGCGGCGGCTGTTGAGCCGGGACACCT
GGGTGATGTTTGGCGCGTTCTTCACCGAGGTGGTGGCGGCAGACCCCGCCACGTTCGCGGGCTAC
GACGAGATGGCGGCGTGGCCCGCGGTGGTGGACGAGTACGTCGAG
Right flanking sequence: Indices 31819 -- 32318
ATGTCTATACGGTTCTATGGGTTAATTGAGAAGATTACCAATACTCAGTTTCTTCATCGCAAGCA
AGGTGCGGCCAGCGTCCTCCTCCTTGATCTCTCCGTCCACCCCCTCCACCATGTCGTCGCCGGCG
TAGTCGCTGATGAGCAACCGCGGGTTGATGACGACGTCGCTGGGGGGCCGGCTGCGGAACTTGCG
CTTCTTGGGAAGAGGAGCGTCATCGACCAGCGACGACAGCAACGCCGGGTCCGGCAAGGCAAACT
TGGCGGTGGACTCGATGCCAAGCAGGCTGCGGATAGCGGGCAGGGTCATCGTCAGCGGCAACACG
GTGGTGTGGGGCAGGATCGGGTTCAGCACCCGCCGCAGGGTGGTGTACCGCAGGTTGACCGAGCC
AAACACCGGCAGGATCTGGGGCGTGGCCACCGGCAGCGGCAACGTGGGGTCGTCGTCGGGGTGGT
CGGGCTCGGGCACCTCGGCAATCACGTCGGGGTCGCTGTTGAGCA
Found at i:34400 original size:12 final size:12
Alignment explanation
Indices: 34385--34421 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
34375 TCCTATCTAA
34385 ACTCATGCATCT
1 ACTCATGCATCT
34397 ACTCATGCATCT
1 ACTCATGCATCT
34409 ACTCATGCATCT
1 ACTCATGCATCT
34421 A
1 A
34422 AACTCATGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.32
Consensus pattern (12 bp):
ACTCATGCATCT
Left flanking sequence: Indices 33885 -- 34384
AGTCGGTGTCGTCGGAGTCGTCGGCGTCGTCGGTCGCCGGACGCAGCCGCCAGTTCTTGAGTTGC
TGTTCCCACTCGTCCACTGTGTAGCCAAACCACTGGTCGCGGGCCTCGTCCCACCGGTCCGCGGG
CTTCACGCCGTCCTGGATGCCTGCTCCAAGCTCGGCGTCGCCGCGGTCGATGCTGGCATCGCCCT
CGGCCTTGAACACCCGCTCCTCTTGCTGGTTGTACCACCGGGTCTCCTTGATGAACTTGGGCACA
TGGGCCATGGTGCGATGATCGGTGTACTGCAGGTAGTCCCATGATTTGGTGAAGCAAGCGACTAG
GCACGGCCGGGTTCGTAACTCTTTGGGAAGGGCTTGTAACCATGACAGGGTTCATAACGTTTGTG
GTTGTTTTACTTTAAACCCATTAGGAAATCGTAGACATCTAACCTCAGGCATCTAACCTCAGGCA
TCTAACCTCAGGCATCTAAACTGAGGCATTTAGACTCCTATCTAA
Right flanking sequence: Indices 34422 -- 34921
AACTCATGCTACACTCACTCGTCGTCTCTGCCCGGGGGCGTGTCTATTATGCAAATGTCACTAGA
ATTGGAGCCACTCATCCTCGACAATATCGGTAATGGACGGGCGCGAGGCCACGTCCCGCACCAAT
ATCCGCTTGATGAGGGCTATGCTGGCGTCGGAGATCACGTAGGGCACCCGCAAGTCCCCCTCCAT
GATCTCGTCCACGTTGTAGAACGGGTTCTCTTTGTAGAGCATGGTATAAAGCAAAATGCCCAACG
CCCAGATGTCCTGGGGCCGCCCGTCGTACTTGTCGCCGCGGAGCACTTCCGGCAGCGCGTAGTCG
ATGGTGCCGACAAACACGTCAAACGGGCCCTGTTTGGTGTACCCGGCCGAGCCAAAGTCGATCAA
CTTGATGATGCCGTTCTCGTCGACAATGACGTTCTCGTCCTTGATGTCGCGATGGACAATGCCGT
GCTTGTGCAAGTGGTAGATCGCCAGGCACACCTGGCGGAAAATGA
Found at i:34428 original size:14 final size:14
Alignment explanation
Indices: 34310--34430 Score: 101
Period size: 14 Copynumber: 9.1 Consensus size: 14
34300 AAATCGTAGA
* *
34310 CATCTAACCTCAGG
1 CATCTAAACTCATG
* *
34324 CATCTAACCTCAGG
1 CATCTAAACTCATG
* *
34338 CATCTAACCTCAGG
1 CATCTAAACTCATG
* *
34352 CATCTAAACTGAGG
1 CATCTAAACTCATG
* * *
34366 CATTTAGACTCCT-
1 CATCTAAACTCATG
34379 -ATCTAAACTCATG
1 CATCTAAACTCATG
34392 CATCT--ACTCATG
1 CATCTAAACTCATG
34404 CATCT--ACTCATG
1 CATCTAAACTCATG
34416 CATCTAAACTCATG
1 CATCTAAACTCATG
34430 C
1 C
34431 TACACTCACT
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
12 33 0.35
14 60 0.65
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (14 bp):
CATCTAAACTCATG
Left flanking sequence: Indices 33810 -- 34309
GTTCCCACGGGTGGTTCCGCCCGGTCTTCTTGATGTCGTGCTTGGAGAGCCCGAGCTCGATGAGC
TCAAGCTCGTAGTCGGTGTCGTCGGAGTCGTCGGCGTCGTCGGTCGCCGGACGCAGCCGCCAGTT
CTTGAGTTGCTGTTCCCACTCGTCCACTGTGTAGCCAAACCACTGGTCGCGGGCCTCGTCCCACC
GGTCCGCGGGCTTCACGCCGTCCTGGATGCCTGCTCCAAGCTCGGCGTCGCCGCGGTCGATGCTG
GCATCGCCCTCGGCCTTGAACACCCGCTCCTCTTGCTGGTTGTACCACCGGGTCTCCTTGATGAA
CTTGGGCACATGGGCCATGGTGCGATGATCGGTGTACTGCAGGTAGTCCCATGATTTGGTGAAGC
AAGCGACTAGGCACGGCCGGGTTCGTAACTCTTTGGGAAGGGCTTGTAACCATGACAGGGTTCAT
AACGTTTGTGGTTGTTTTACTTTAAACCCATTAGGAAATCGTAGA
Right flanking sequence: Indices 34431 -- 34930
TACACTCACTCGTCGTCTCTGCCCGGGGGCGTGTCTATTATGCAAATGTCACTAGAATTGGAGCC
ACTCATCCTCGACAATATCGGTAATGGACGGGCGCGAGGCCACGTCCCGCACCAATATCCGCTTG
ATGAGGGCTATGCTGGCGTCGGAGATCACGTAGGGCACCCGCAAGTCCCCCTCCATGATCTCGTC
CACGTTGTAGAACGGGTTCTCTTTGTAGAGCATGGTATAAAGCAAAATGCCCAACGCCCAGATGT
CCTGGGGCCGCCCGTCGTACTTGTCGCCGCGGAGCACTTCCGGCAGCGCGTAGTCGATGGTGCCG
ACAAACACGTCAAACGGGCCCTGTTTGGTGTACCCGGCCGAGCCAAAGTCGATCAACTTGATGAT
GCCGTTCTCGTCGACAATGACGTTCTCGTCCTTGATGTCGCGATGGACAATGCCGTGCTTGTGCA
AGTGGTAGATCGCCAGGCACACCTGGCGGAAAATGAACCGGCACT
Found at i:38396 original size:14 final size:14
Alignment explanation
Indices: 38377--38404 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38367 CAAGTGCATG
38377 AATGTAATGAATGA
1 AATGTAATGAATGA
38391 AATGTAATGAATGA
1 AATGTAATGAATGA
38405 GACGTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (14 bp):
AATGTAATGAATGA
Left flanking sequence: Indices 37877 -- 38376
GGTGGGTGGCGTAGTGGCGTAGTGGGTGGCTATCGCGGTTTCTACTGCTGATCTAGGGTTTGTTT
AGGGTATGTTTAGGGTGTATGGGACTACTGTGGTTATGGTGGCATATACGAGAGGAGCCCGAAGG
CGTTTTTGTGGGGGTGCGTGGCACAGCTTTTTTCAGAGTAGGGGGTATTTCACGTTCACCTGGGT
GCGGTGGCTTGTTCACATGTGGCTGTGTTCTGTTCTTTTCTTGTCTCCGTTTCTGCTTGCTGCAA
TTGGCACGGCTGCGACGGTGTGCACATGGTAGCCTAGGTACGTTACCATGGTACATTTCCATGGA
ATGGCACATACTACACAAACACGTCATAACCAGGGTTCCCGGGTGCATTGCGGTGAAAATTTCCA
GATAATGTCGTGGTGATGTGGGTTTTCAGGTACACGTCCGAACACCTGTTCGTAGGTGTGGTGAC
CATTAGGACATGTGTTTCAGAGTTTGATTCCAAAACAAGTGCATG
Right flanking sequence: Indices 38405 -- 38904
GACGTAATTTAATGTAACAAAAACTTGTTGCATGTAGAAATACATGGTGAAAATTCAAGATGACC
ATGTTGAGTGCATATGTACATGCTTACTGAATATTCGCTGCTGTATAGGCTTACTTAAATATTCG
CTGCTCTACATGCTTACTGAATACTCATGCTCTATACGCTCCCCTGAATATCCTCGCTCTACACG
CCCTTTTGTAACCCATCTCACTACTCCACACCTCCAATAGTTCGTAATCATTAATGCTATGTCAG
TGGTTGGAAAACCCCTTTTGCCACACGTCGCTCTCGTCGTGCCCGCGCCACAACCGCGAGATGGT
GATGCCCATGTCGTATTTTTTCCGCTGCAACTCGTCCTGCTTCATCCGAAGCTTTTCGATCGCCT
TGGTGATCTTGTTGCGCGTTGCGTAGTCAATCTCGACGTTGTACGGGGGTAGCAATTTAGACAAA
AACTCGATTTCCTTGTCGATCTTGGCAATGCGCTTGATGTAAGCG
Found at i:38549 original size:28 final size:28
Alignment explanation
Indices: 38486--38552 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
38476 AGTGCATATG
* *
38486 TACATGCTTAC-TGAATATTCGCTGCTG
1 TACATGCTTACTTAAATATTCGCTGCTC
* *
38513 TATAGGCTTACTTAAATATTCGCTGCTC
1 TACATGCTTACTTAAATATTCGCTGCTC
38541 TACATGCTTACT
1 TACATGCTTACT
38553 GAATACTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 9 0.27
28 24 0.73
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (28 bp):
TACATGCTTACTTAAATATTCGCTGCTC
Left flanking sequence: Indices 37986 -- 38485
TATACGAGAGGAGCCCGAAGGCGTTTTTGTGGGGGTGCGTGGCACAGCTTTTTTCAGAGTAGGGG
GTATTTCACGTTCACCTGGGTGCGGTGGCTTGTTCACATGTGGCTGTGTTCTGTTCTTTTCTTGT
CTCCGTTTCTGCTTGCTGCAATTGGCACGGCTGCGACGGTGTGCACATGGTAGCCTAGGTACGTT
ACCATGGTACATTTCCATGGAATGGCACATACTACACAAACACGTCATAACCAGGGTTCCCGGGT
GCATTGCGGTGAAAATTTCCAGATAATGTCGTGGTGATGTGGGTTTTCAGGTACACGTCCGAACA
CCTGTTCGTAGGTGTGGTGACCATTAGGACATGTGTTTCAGAGTTTGATTCCAAAACAAGTGCAT
GAATGTAATGAATGAAATGTAATGAATGAGACGTAATTTAATGTAACAAAAACTTGTTGCATGTA
GAAATACATGGTGAAAATTCAAGATGACCATGTTGAGTGCATATG
Right flanking sequence: Indices 38553 -- 39052
GAATACTCATGCTCTATACGCTCCCCTGAATATCCTCGCTCTACACGCCCTTTTGTAACCCATCT
CACTACTCCACACCTCCAATAGTTCGTAATCATTAATGCTATGTCAGTGGTTGGAAAACCCCTTT
TGCCACACGTCGCTCTCGTCGTGCCCGCGCCACAACCGCGAGATGGTGATGCCCATGTCGTATTT
TTTCCGCTGCAACTCGTCCTGCTTCATCCGAAGCTTTTCGATCGCCTTGGTGATCTTGTTGCGCG
TTGCGTAGTCAATCTCGACGTTGTACGGGGGTAGCAATTTAGACAAAAACTCGATTTCCTTGTCG
ATCTTGGCAATGCGCTTGATGTAAGCGTCGTGCTTTTTCTGCGCTGCCATCAACTTTTCTTTATC
CTTCACCGCTGCCTCCCCGTCAAGCAGGTCTGCCACGCTCAGCTGGCGCTGTTGTTTGGTCAGAT
CGACCCGTTTCACGGTGAAACGGGTCGCTTTCTTCAAGTAGGGGT
Found at i:42987 original size:16 final size:16
Alignment explanation
Indices: 42962--43056 Score: 181
Period size: 16 Copynumber: 5.9 Consensus size: 16
42952 GTGCCAACAA
42962 CCAGTAGACATCCACAG
1 CCAGT-GACATCCACAG
42979 CCAGTGACATCCACAG
1 CCAGTGACATCCACAG
42995 CCAGTGACATCCACAG
1 CCAGTGACATCCACAG
43011 CCAGTGACATCCACAG
1 CCAGTGACATCCACAG
43027 CCAGTGACATCCACAG
1 CCAGTGACATCCACAG
43043 CCAGTGACATCCAC
1 CCAGTGACATCCAC
43057 CAACACCATC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
16 73 0.94
17 5 0.06
ACGTcount: A:0.32, C:0.38, G:0.18, T:0.13
Consensus pattern (16 bp):
CCAGTGACATCCACAG
Left flanking sequence: Indices 42462 -- 42961
GAGCCGAGACAGGTGGCCTAGGTCAAGATGATCAAAGGGTTCAAGGCGGTCATGGTGGTCTAATG
GTGTTGATTGAGTGTGTGGGATTATGTATTCATGAGCTACTTGCAGACGTGCTGTTCAGTAGGCC
GTGCTCGTCGTGCGTTGCGGTATCACGAGCGGAACATCCACCGACCAGGTGATCGGGTCCGAGGA
GTGGTGTGCTACTGCGGGGTAAATACGCTGTCGTCTCGTAGGGTCTGGCCAGCAGTTAGCGAGGC
GGAGCGGTTTTAGCCCGTGGCTACGTGGTGGTCCCGCTCTACGTACACAAAAAGTAGCCTTGGTG
AAGTGGCCGCTCTCACCGTACAAAACCACCCACCACCACAGCTCCACCCAACAAAACCACCGTGT
CGCGGCCACCGCCACCGCGTCATCGTTTTCGCCTTTCTACGACACGCCAGCATGGCCGTGCATGG
TCAGCTGGTCCCCACATCAGCTATATAACGGGGTAGTGCCAACAA
Right flanking sequence: Indices 43057 -- 43556
CAACACCATCCAACCGGTAGACATGATTGCCAACCTAGCAGGCACCAGCAAACCCACGCCCAAGG
CCGCCGAGGAACACCCCAGGCTGACCCACACCAACTTGATGGCCAACATCAACGGCACAGAAGCC
CAGCCCGAGGGCCACGCCAACTTGATGGCCAACATCAACGGCACCGAAGCGCAACCAGAGGGCCA
CGCCAACTTGATGGCCAACATCGGCGGCACCGAGGGGTCCCCCAAGAAGCACCGCAACTTGATGG
CCAACTTTGGCGGGTCGTCGTAAATATCGTGTTTATCATGTAAATGCTATATCGTTATGCGAGGT
TGTAGAGCCCGTTGGAGGGGGCGCCGCCGTTGATGGACGAGCTCTCCTGGAGGGTGGCTATCAAC
ATGTCGATGTCCTCGAAGTTGCGGCGGTCGTTGGCAAACCGCCGGTGGCGGGTCGAGGTGATGTG
GTCGTCAAAGTTGTCGTACTTGATGCGGCAGTTTTCGCAGTAGCC
Found at i:43280 original size:51 final size:51
Alignment explanation
Indices: 43147--43284 Score: 213
Period size: 51 Copynumber: 2.7 Consensus size: 51
43137 CCAGGCTGAC
* * * *
43147 CCACACCAACTTGATGGCCAACATCAACGGCACAGAAGCCCAGCCCGAGGG
1 CCACGCCAACTTGATGGCCAACATCAACGGCACCGAAGCCCAACCAGAGGG
*
43198 CCACGCCAACTTGATGGCCAACATCAACGGCACCGAAGCGCAACCAGAGGG
1 CCACGCCAACTTGATGGCCAACATCAACGGCACCGAAGCCCAACCAGAGGG
**
43249 CCACGCCAACTTGATGGCCAACATCGGCGGCACCGA
1 CCACGCCAACTTGATGGCCAACATCAACGGCACCGA
43285 GGGGTCCCCC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 80 1.00
ACGTcount: A:0.30, C:0.37, G:0.25, T:0.09
Consensus pattern (51 bp):
CCACGCCAACTTGATGGCCAACATCAACGGCACCGAAGCCCAACCAGAGGG
Left flanking sequence: Indices 42647 -- 43146
GGTCCGAGGAGTGGTGTGCTACTGCGGGGTAAATACGCTGTCGTCTCGTAGGGTCTGGCCAGCAG
TTAGCGAGGCGGAGCGGTTTTAGCCCGTGGCTACGTGGTGGTCCCGCTCTACGTACACAAAAAGT
AGCCTTGGTGAAGTGGCCGCTCTCACCGTACAAAACCACCCACCACCACAGCTCCACCCAACAAA
ACCACCGTGTCGCGGCCACCGCCACCGCGTCATCGTTTTCGCCTTTCTACGACACGCCAGCATGG
CCGTGCATGGTCAGCTGGTCCCCACATCAGCTATATAACGGGGTAGTGCCAACAACCAGTAGACA
TCCACAGCCAGTGACATCCACAGCCAGTGACATCCACAGCCAGTGACATCCACAGCCAGTGACAT
CCACAGCCAGTGACATCCACCAACACCATCCAACCGGTAGACATGATTGCCAACCTAGCAGGCAC
CAGCAAACCCACGCCCAAGGCCGCCGAGGAACACCCCAGGCTGAC
Right flanking sequence: Indices 43285 -- 43784
GGGGTCCCCCAAGAAGCACCGCAACTTGATGGCCAACTTTGGCGGGTCGTCGTAAATATCGTGTT
TATCATGTAAATGCTATATCGTTATGCGAGGTTGTAGAGCCCGTTGGAGGGGGCGCCGCCGTTGA
TGGACGAGCTCTCCTGGAGGGTGGCTATCAACATGTCGATGTCCTCGAAGTTGCGGCGGTCGTTG
GCAAACCGCCGGTGGCGGGTCGAGGTGATGTGGTCGTCAAAGTTGTCGTACTTGATGCGGCAGTT
TTCGCAGTAGCCCGGGTGGTGCTCGCGCTCGCGCGGCTTGGGCTGCTGCTGCTGCTTGCGGCGGA
TGATCCGGCGCTTCAAGTTGGTGAGGTTGCGCAGCGGCGCCGCCGTCATCGGGCCCAACCCGTTG
CCGCCGTTGTTGTTCAGGTGGAGCCCCAGCTCCATCAGCATCTGCACCAGGTTCAGAGCCCCGTT
GTAGCCCAGCGCGGTGACGTCACAGGGGACCCGCGCCACCAGCAG
Found at i:50681 original size:14 final size:14
Alignment explanation
Indices: 50662--50694 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
50652 TGAGCGCGCT
50662 ATGAGCTACGAGCA
1 ATGAGCTACGAGCA
50676 ATGAGCTACGAGCA
1 ATGAGCTACGAGCA
50690 ATGAG
1 ATGAG
50695 AAATGATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.15
Consensus pattern (14 bp):
ATGAGCTACGAGCA
Left flanking sequence: Indices 50162 -- 50661
AAATTGCTTTTTCTGATTCCTGACAACCATTAAGGTCGTTTGACCCACAGTTGAGGCTCTCCGTT
GTTAGCGAAGGTAAAATGTGGAGCGGTGCCTACTGTTTACGAGAAATTTGCAGCCACCAACCTGT
AGTTTGAAAAGAGCACCACCACCGAGGCGAAGGTTTGGTAACAGTGCAGCTGAAGCAATAGCAAT
TATCGCAAGATATCTACGAGAATATAAATAGCTAGCACGAATGTCACTCTTCTTACTATAATTCA
AAAATGGCTGCTTCTGACGTTTGTACTGGATGTTCCCCTGGCTGCAAGTGCCCCGACGAGACCTG
CTCCAAGGTCAAGTGCAAGCTGTGCACTGGTGAGGACTGCGCTTGTGCCAACGTGTGTGCCTCTT
GCACCTCTGACTGCAACTGCAAGGGCTGTGACAAGACTGCCTGTCAGAAGTGCACTGACGAGGGC
TGCACTTGTGGCAAGTAAACTGCTGCCATGAGATATGAGCGCGCT
Right flanking sequence: Indices 50695 -- 51194
AAATGATATACGAATACACAAATCTCGCCAAAACTAAGTCTTCATTCAATTGTTTTAATTCAATT
GTCTTGCCATAAACTCCCCTCACTCGCTCTCGCTACCACCTTACGTTATTGTAGTAGGGCAGTGC
GCGGGAACGGACGCGTTATCGTAGGCGTGATCGAACAACAATGTCACCCAGGGTAAACAATCAAG
CCATTATCTCGCCCGCATCACGCTACCACCCGCGGGACCGCAGACGACGGTAAACGTCACGTTTC
CTCCCGTATCACCCCCGAGCCCGTCACGTGACGCGACACGCCTTGCGCGTCTTGAAAAATAGTGA
ACAGGTAACGAGACACTGATAACCATGGAGCTGAGTAGTGGACAAAACCCGGTGATGATGCAGAT
CAACCGGGTCAAGGTGACCTACCAGAAAATGTTGGACGACGTGGTGCCGTTCAAGATCCAGAGAT
GGGCGGCGTTCGGCGTGCTTTTGGCGTTGTTCATGTTGCGGGTGT
Found at i:51679 original size:10 final size:10
Alignment explanation
Indices: 51664--51688 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51654 ATAGAATCTG
51664 TGTATCGTAT
1 TGTATCGTAT
51674 TGTATCGTAT
1 TGTATCGTAT
51684 TGTAT
1 TGTAT
51689 TTTTTCAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.20, T:0.52
Consensus pattern (10 bp):
TGTATCGTAT
Left flanking sequence: Indices 51164 -- 51663
GTGCTTTTGGCGTTGTTCATGTTGCGGGTGTTGCTCGCGCAAGGGTGGTACATCATCTGCTACGC
GCTTGGGATCTACCTCCTCAACATGTTTTTGGCGTTCCTCACCCCGAAGTTCGACCCGTCGTTGG
AGCAGGAGGAGCGGGCCGAGCTGCTTGAGGAGGGAGTGGAGGAGGACGGCGGCGCCGAGGAGTTC
CGGCCGTTCATCCGCCGGTTGCCCGAGTTCAAGTTCTGGTACAACGCCATCCGCGGGGTGGTGTT
GCTGATCTTCCTCTCGCTCTTCCCCATCACCGACATCCCGGTGTTCTGGCCCATTTTGTTGATGT
ACTTTATTATCTTGTTTACGTTTACCATGCGCAAGCAGATCCAGCACATGGTCAAGTACAAGTAC
TTGCCGTTTGATGTGGGCAAGAAGAACTATGGGAGAGCGGTCTAAATGGTGTACTAATAAATTAA
CGACGTGATGGTTGCTGCCGAACAGAGCCGTGTAGATAGAATCTG
Right flanking sequence: Indices 51689 -- 52188
TTTTTCAGAAAAGATGAAATTTGAGACAAAATGTTTTGTCCGATCGAGACGAAGCCGGGACTAGT
AGAGAGCCCAGCTACACGCCAGCCCGTTCGGAATAAACCAGCACCTATTCTCTGTTCCCACCACC
CTGCTCCACCTAAACCACACCTCTCCACACCAATTGCCCCTCACCGCTCCCGTCTCGGTTGCGGC
ATTTTCTCCGATCCACCTGATCCAGCCACGGTAGCGGCCCACCAACGCCAAACCTACAACAACCA
CGCAACAAGCCCCATCCACTCCCACCACTCCCACCCATCCCCTTCCGCACACCCCACACCACCAC
ACAACCACTCCCTCCACACCTCCAGCCCAACCCACCGCCATCGTCTCCCCCACCAGGCTGTGTTG
CACGTGACCCCGCATAGATTGCGCATAACCACGTCCGCTCGGACACTCACCCAGTCTGCCAATTG
CCAGTGTCCACGCAATGTCCCGGGCAGAAGTTGATTTGCAGATAG
Found at i:53152 original size:27 final size:27
Alignment explanation
Indices: 53121--53208 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
53111 GTTGGAGGCC
53121 CAGCGCCAGCAGCAGTTGGCGGAGCAG
1 CAGCGCCAGCAGCAGTTGGCGGAGCAG
* * * *
53148 CAGCGCCAGCAACAGGCGTTTGAGGACCAG
1 CAGCGCCAGCAGCA---GTTGGCGGAGCAG
**
53178 CAGCGCCAGCAGCAGTTGGCGTTGCAG
1 CAGCGCCAGCAGCAGTTGGCGGAGCAG
53205 CAGC
1 CAGC
53209 AGCAGCACGC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
27 25 0.52
30 23 0.48
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (27 bp):
CAGCGCCAGCAGCAGTTGGCGGAGCAG
Left flanking sequence: Indices 52621 -- 53120
TGATGGACTTGCAGGACGCCATCAACGACTTGCAGAAGCTCATCTTTGCCACCATCCACCAGACC
AACAACAACTTGTGCAAGGTGCTGGCGTTGGTGCCGCTCATCGCCGAGCTGTACGGAATCTACAA
GTTCTGCACCCTGATGTTGCGGGCCATGTACCAGCAATTGGGCGAGGACGACTTGTTGCAGGGGT
TGTTTGACCGCTTCAACCTGCAGTACTTTATGTTGCGGGACTTCTACACCGACTGCCACGCCATC
AAGTTCTTGACGCTGTTGGTGCAGATCCCGAAGTTGCTGGCGCACCCGCCCAACTTGAAGGTGAC
CGACGGCGGCGAGCCGATCGCGCCCCCGCGTCCCGTGGAGCGGGTGGCCAGCGAGGCCACGATGG
CGCCGCCAGCGACCCCGCCACCGGAGTTGCCGCAGATGCAGTCGCAGCAGACGGGATGGCTCAAC
GCGCAGATGGAGGAGCAGGCAGCCATCCAGGCGCAGTTGGAGGCC
Right flanking sequence: Indices 53209 -- 53708
AGCAGCACGCGTTGCAGGCGCAGCAGACCCAGCTGGCGCTGCGGGTGCTGGAGCTCGAGCACGAC
TTGTTGATGTTCAAGAACCAGTACGACAACGACCAGAACTTGTTGCAGCAGTACGACCTGCGGGT
CAAGCTGTTGGAGACCGAGTTGCAGCTGTTCAACAACACCGCCACCCAGCAGTTGGCGCTGAAGG
ACGAGCAGATCCGCAACCTCGAGGAGCAGATCGCCAACTGGACGAAAAAGTACGAGAAGTTGGCC
AAGCTCTACCTGCAGTTGCGCGGCGAGCACTTGAACTTGTTGCTGAAGTTCAAGAAGATCCAGCA
AAAGATCAACCTGGCGCAGGAGCTGATCCAGAAGAAGGAAAAGTACGAAAAGGACTTGAAGCTGA
AGAACCTCGAGTTGGCCGACCTCATCCGCGAGCGCGACCGCGCCCGGTTGGACTTGGACCGGGTC
AAGGGCGCCAAGGACCAGGAGATCGAAAAGTTGCAGGCGCAGATC
Found at i:53209 original size:30 final size:29
Alignment explanation
Indices: 53121--53211 Score: 93
Period size: 30 Copynumber: 3.1 Consensus size: 29
53111 GTTGGAGGCC
53121 CAGCGCCAGCAGCAGTTGGCG--GAGCAG
1 CAGCGCCAGCAGCAGTTGGCGTTGAGCAG
*
53148 CAGCGCCAGCAACA---GGCGTTTGAGGACCAG
1 CAGCGCCAGCAGCAGTTGGCG-TTGA-G--CAG
53178 CAGCGCCAGCAGCAGTTGGCGTTGCAGCAG
1 CAGCGCCAGCAGCAGTTGGCGTTG-AGCAG
53208 CAGC
1 CAGC
53212 AGCACGCGTT
Statistics
Matches: 52, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
24 4 0.08
27 15 0.29
28 1 0.02
30 23 0.44
32 4 0.08
33 5 0.10
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (29 bp):
CAGCGCCAGCAGCAGTTGGCGTTGAGCAG
Left flanking sequence: Indices 52621 -- 53120
TGATGGACTTGCAGGACGCCATCAACGACTTGCAGAAGCTCATCTTTGCCACCATCCACCAGACC
AACAACAACTTGTGCAAGGTGCTGGCGTTGGTGCCGCTCATCGCCGAGCTGTACGGAATCTACAA
GTTCTGCACCCTGATGTTGCGGGCCATGTACCAGCAATTGGGCGAGGACGACTTGTTGCAGGGGT
TGTTTGACCGCTTCAACCTGCAGTACTTTATGTTGCGGGACTTCTACACCGACTGCCACGCCATC
AAGTTCTTGACGCTGTTGGTGCAGATCCCGAAGTTGCTGGCGCACCCGCCCAACTTGAAGGTGAC
CGACGGCGGCGAGCCGATCGCGCCCCCGCGTCCCGTGGAGCGGGTGGCCAGCGAGGCCACGATGG
CGCCGCCAGCGACCCCGCCACCGGAGTTGCCGCAGATGCAGTCGCAGCAGACGGGATGGCTCAAC
GCGCAGATGGAGGAGCAGGCAGCCATCCAGGCGCAGTTGGAGGCC
Right flanking sequence: Indices 53212 -- 53711
AGCACGCGTTGCAGGCGCAGCAGACCCAGCTGGCGCTGCGGGTGCTGGAGCTCGAGCACGACTTG
TTGATGTTCAAGAACCAGTACGACAACGACCAGAACTTGTTGCAGCAGTACGACCTGCGGGTCAA
GCTGTTGGAGACCGAGTTGCAGCTGTTCAACAACACCGCCACCCAGCAGTTGGCGCTGAAGGACG
AGCAGATCCGCAACCTCGAGGAGCAGATCGCCAACTGGACGAAAAAGTACGAGAAGTTGGCCAAG
CTCTACCTGCAGTTGCGCGGCGAGCACTTGAACTTGTTGCTGAAGTTCAAGAAGATCCAGCAAAA
GATCAACCTGGCGCAGGAGCTGATCCAGAAGAAGGAAAAGTACGAAAAGGACTTGAAGCTGAAGA
ACCTCGAGTTGGCCGACCTCATCCGCGAGCGCGACCGCGCCCGGTTGGACTTGGACCGGGTCAAG
GGCGCCAAGGACCAGGAGATCGAAAAGTTGCAGGCGCAGATCCGC
Found at i:55623 original size:80 final size:78
Alignment explanation
Indices: 55426--55632 Score: 208
Period size: 74 Copynumber: 2.7 Consensus size: 78
55416 TAAGCTAGTA
* * * * * *
55426 TCTACGAATCATACATGACAGCTCTTCTGAGCTCGATTTACGACAGCAGCCACGGCCGCAGCGAC
1 TCTACGAACCATACATGACAGCACTT-TTAGCTTGATTTACGACAGTAGCCACGACCGCAGCGAC
**
55491 GACGAAAACTGGTT
65 GACGAAAACTACTT
* ** * *
55505 TCT-CGAACC-TATATG-TGGTAC-TTTAGCTTGATTTACGACAGTAGCCTCCGACCGCAGCGAC
1 TCTACGAACCATACATGACAGCACTTTTAGCTTGATTTACGACAGTAGCC-ACGACCGCAGCGAC
55566 GAC-AAATACTACTT
65 GACGAAA-ACTACTT
* *
55580 TCTACGAACCAATACATGACAGCCCTTTTAGCTTGATTTACGACGGTAGCCAC
1 TCTACGAACC-ATACATGACAGCACTTTTAGCTTGATTTACGACAGTAGCCAC
55633 CCGTCGCTGC
Statistics
Matches: 101, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
74 24 0.24
75 24 0.24
76 8 0.08
77 5 0.05
78 10 0.10
79 6 0.06
80 24 0.24
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (78 bp):
TCTACGAACCATACATGACAGCACTTTTAGCTTGATTTACGACAGTAGCCACGACCGCAGCGACG
ACGAAAACTACTT
Left flanking sequence: Indices 54926 -- 55425
GGCGCAGTTGGTGGCGGCGCTGCGGGTCAAGGCGACGTTTGTGTCGGCCACCCAGGACAACTTGG
AGCTGGCGCTGTCGCTGGTGTCGCAGGCGTGCAAGGCGCTCGTGTCCAAGGTGCAGTCGCTTCTC
GCTAAGGAGCTGGACGACTTCAACGTTGATCTTGACCGGTTGACCCCCTACGAGGGCAAGACGAT
AGAGATGGAGCAGCAGGTGGAGATTCTCCAGCTCGAGAACAAGTTGGCCACCGCGCGCAAGCGGT
TGGGCGAGATCAGAAAGCATGGCTACAGAGACGACAACTCCGACGACGAAAACTAGTATCTACGA
ATCAATATATGACGGCACTTAGATGACAGTAGCGGTTGCTGCGACAAAAAGCGACGAAAGATTGG
TTTCTCGAACCAAAGTCTCCATTCAGTACACACTTCGGTGCTTGATATGACAGCACTTTAGCTTG
CTTTGCGACTGTAGCTACCGGCCGCTGCCGCAACATAAGCTAGTA
Right flanking sequence: Indices 55633 -- 56132
CCGTCGCTGCGCCTCGTACGCACCTGCATGGACCCGCAAGTCTCGATAGGACACGTCTCTCTACC
AGGGGTGAAAAATGGCAGGCGGTTGCCAATTGCGGAGACCGAACGCCGACGGAGGCAAGTGAACC
CGTGGGGAATGCGCAATGGAATGTGTGACGCAATTGACCCCTTCTAGATCGGGTTTAGTGTCCAG
TGTCTAATGCTACAACGCTAAAATGCTAAATCGCCCTCTGACATAATCGGGATACAACAATAGAA
CAGCCTGCTTGCGTGCTGCAAGCACGAGTCGCGTAGCCCCTACCCAATACGGACCAAATTGGATC
CGATCGTATTCACCCGTAAAATAAGGTGCGCACGGGACACCTGATCCCAGGGGAACAATGGCCGC
AACGCCAGCCCGGGGGCCAATGGGGCGCCACCATGCGACCTCCACGGCGCGGCCACCACCTGGCC
ACCGCATCCGAGGTCCACCACCTCCGCCGCACCCCCAATTGCTGA
Found at i:62960 original size:42 final size:43
Alignment explanation
Indices: 62866--62963 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 43
62856 ATAGGCTTCA
62866 CAAGCAAG-C-CCACAACAGCCCAACAACGCATTAGATATGTCC
1 CAAGCAAGCCTCCACAACAG-CCAACAACGCATTAGATATGTCC
* * * * *
62908 CAAACAAGCCTCCACAACAG-CAATAACGCTTTAGATTTGTTC
1 CAAGCAAGCCTCCACAACAGCCAACAACGCATTAGATATGTCC
62950 CAAGCAAGCCTCCA
1 CAAGCAAGCCTCCA
62964 GCTCATTAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 38 0.79
43 1 0.02
44 9 0.19
ACGTcount: A:0.37, C:0.34, G:0.13, T:0.16
Consensus pattern (43 bp):
CAAGCAAGCCTCCACAACAGCCAACAACGCATTAGATATGTCC
Left flanking sequence: Indices 62366 -- 62865
AAGACCGTACCAGTCCTTCACAATTCTGGTGGTGTCTGGGGGCTGGCGAGTGTGGTGGGAAAACA
CCCAGCGAATGCCTAACGCCGCCAAAATAAAAAGACTGACTGCAACACACGAGACAAGAGGGCTA
GTAAAAATGCCAAACCGCGTAGACCACAGTTCGCTCTCGACAAACAAGACCAAGCTCGACAGCTG
TTCTCCCATTACTTTGGCGAGAGCATCCGCTGGCTCTTTATGGACCGCACTATGCACCTGGGGTA
CAGACTACGCTACATACCCCTAATGCACCACCGTCTCGTCTAACCACCCCACAAAATCACTGACT
AGACGTCAGCAACCCGCTTGTTAATAAAATACCAGTAGACCCGCTTTCGCAGCCACCCCGATCGC
AATAACCCCGGTTGCAACCACCCGTCGCTTTGGCTGCAAATTCTACCGACTAGCAAAAGTGGAAA
CATGCGAATATTTCATAGCCCCAGGGCCTAGACCCATAGGCTTCA
Right flanking sequence: Indices 62964 -- 63463
GCTCATTAACGCATGATATATCCCAAGCCTCCAGCTTTAAATTAGATATGTGCATTTCCCCCTGT
ATTACGTACCTTCTCTATCTACTCCGAGTCGTCGGGTTTCGGCGAATGCGCAATGCGCTCATCGC
CACTGGAATTGATGTGCGCCACCTTGTTCGACGTCGGGTCCTTCAGAAGCACCCGCTGTTTGCGA
GCACGCCCGTCGTCGCCCCCGTCGTCGCCCCCGTTCTCTTCCTCGTACAAGTCGGGCTCCTCTTC
GACGGTAAACTGCGGCACGCGCGGCTGCTGCGCGGCAAACTCGTGGCACTGGGCCACCACCTGGC
TGAGCAGCCGGTTGTTCTCCTGGAGCCGCGCGGAAAACTCCTGCTCGCCCGTGGCGAGCAACTGC
TGGATGTGCTGCGACCCCTTCACCGGGCTGCGCTTGTGGTAGAACAACAAGTAGGCCGCCCCCGT
GATCACTTCTTCCGGCAGGTCGAGCGGCGTCACCCGCGCGTCGTT
Found at i:63181 original size:12 final size:12
Alignment explanation
Indices: 63164--63192 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
63154 TGCGAGCACG
63164 CCCGTCGTCGCC
1 CCCGTCGTCGCC
63176 CCCGTCGTCGCC
1 CCCGTCGTCGCC
63188 CCCGT
1 CCCGT
63193 TCTCTTCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.59, G:0.24, T:0.17
Consensus pattern (12 bp):
CCCGTCGTCGCC
Left flanking sequence: Indices 62664 -- 63163
TCTAACCACCCCACAAAATCACTGACTAGACGTCAGCAACCCGCTTGTTAATAAAATACCAGTAG
ACCCGCTTTCGCAGCCACCCCGATCGCAATAACCCCGGTTGCAACCACCCGTCGCTTTGGCTGCA
AATTCTACCGACTAGCAAAAGTGGAAACATGCGAATATTTCATAGCCCCAGGGCCTAGACCCATA
GGCTTCACAAGCAAGCCCACAACAGCCCAACAACGCATTAGATATGTCCCAAACAAGCCTCCACA
ACAGCAATAACGCTTTAGATTTGTTCCAAGCAAGCCTCCAGCTCATTAACGCATGATATATCCCA
AGCCTCCAGCTTTAAATTAGATATGTGCATTTCCCCCTGTATTACGTACCTTCTCTATCTACTCC
GAGTCGTCGGGTTTCGGCGAATGCGCAATGCGCTCATCGCCACTGGAATTGATGTGCGCCACCTT
GTTCGACGTCGGGTCCTTCAGAAGCACCCGCTGTTTGCGAGCACG
Right flanking sequence: Indices 63193 -- 63692
TCTCTTCCTCGTACAAGTCGGGCTCCTCTTCGACGGTAAACTGCGGCACGCGCGGCTGCTGCGCG
GCAAACTCGTGGCACTGGGCCACCACCTGGCTGAGCAGCCGGTTGTTCTCCTGGAGCCGCGCGGA
AAACTCCTGCTCGCCCGTGGCGAGCAACTGCTGGATGTGCTGCGACCCCTTCACCGGGCTGCGCT
TGTGGTAGAACAACAAGTAGGCCGCCCCCGTGATCACTTCTTCCGGCAGGTCGAGCGGCGTCACC
CGCGCGTCGTTGTAGTAGTACCACTTGCCGTCGCGGTTGTTCTTGGCGGCCGCGGTGTAGTGGCC
GCCGCCAAGCCCGCCGTAGTGGTTGTCGACGCCGATCAAGTCGTAGATGTGGTCGTCGCCCGGGC
CGGCCACGTACGACAGCAAGTCGAGCCCCTCGATGGGGAAGTCCACCACCATCTCGATCTTGTCG
GCAAACGCCCGCGCCGAGTGGAACCGCTTCAAGTGGATGGTGACG
Found at i:66928 original size:12 final size:12
Alignment explanation
Indices: 66896--66941 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
66886 ACCCGGGCTT
*
66896 ATCGGCGTGTTT
1 ATCGGCGTGTTC
**
66908 ATCATCGTGTTC
1 ATCGGCGTGTTC
66920 ATCGGCGTGTTC
1 ATCGGCGTGTTC
66932 ATCGGACGTG
1 ATCGG-CGTG
66942 CCCATCGGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 24 0.86
13 4 0.14
ACGTcount: A:0.13, C:0.22, G:0.30, T:0.35
Consensus pattern (12 bp):
ATCGGCGTGTTC
Left flanking sequence: Indices 66396 -- 66895
GTTTTTTTTTTGCCGCGCGTCTCCACACTTGGCAGGAAAATGCCGGGACGAAGCTGGGGTAGACG
AGCTCTAGGGGTGGTGGGGGTTATGTGGGGGTGGCTACGTAGTGGGTGGCGGCCGCGGCGAGCTC
GTGTCGCCACCGCTGTCTTTGTGTGGTGCACGCGAGATTCGCTTGCGGCTCCCCTGAAGATTACT
AAGATCAAATAACGTCGTGGCACGCGCCATGAAGCAAACCAACATAGGGGCAGGGGCCGCCGGTT
AGATTGCTATTTTGAGACGCACGCGAGCGTAAGCCCACCGTGGCCACCGCCGATCGCAACCGCGG
GTGGCCGCCATGGCCACGCTGCTGTCGTGTCGAGATGTGACAGCCTTCTGTGCATACACTTGCCG
ATCTGGGGTTGCAGGTGACTACAAGTCTCGTGGCAGGGCATCACGAGCACGTATTGCCACAACAC
TAAATCAGAGCCATCGCGAGGGGCGCTTTGTGGACACCCGGGCTT
Right flanking sequence: Indices 66942 -- 67441
CCCATCGGACGTGCCCACCGATACTAGTGCCAAGAGCGCACTGTTGCCACGGGCGCATCTTGGTA
GCAACCGTAGCCAGGAACGCGTCTCACATCGTGTGCCTTGCACGTTTACAGTTTGATCGATCGCC
ATCGCGGTGGCAAACCACGGCGCCCTGCCACATGCATATTTTGGTGGCGAAAAGATCGCTATATA
ATCCGGACAGGCAGACCCGACCCCAACTCTCGGACGCTTGCTTGCCCTACCCAACACTTACATCA
CCCCACCTAGGAGGCCCCCGACACAGCCACCTGCCGCATGACATCTGTCAAAGTGTACGTATACG
ATCTCAGCCATGGCATGGCGCGGACGTATGCGCCGATGCTCTTGGGCATCTCTCTCGACGCCATC
TACCACACGTCGGTGGTGGCGTTCGGTAAAGAATACTACATCGACCAGGGCGTCAAACGAAGCGC
GCCAGGCACCACCAAGTATGGGCTCCCCGTAGAAGTACTCGACAT
Found at i:66947 original size:13 final size:13
Alignment explanation
Indices: 66931--66958 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
66921 TCGGCGTGTT
66931 CATCGGACGTGCC
1 CATCGGACGTGCC
66944 CATCGGACGTGCC
1 CATCGGACGTGCC
66957 CA
1 CA
66959 CCGATACTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.39, G:0.29, T:0.14
Consensus pattern (13 bp):
CATCGGACGTGCC
Left flanking sequence: Indices 66431 -- 66930
GAAAATGCCGGGACGAAGCTGGGGTAGACGAGCTCTAGGGGTGGTGGGGGTTATGTGGGGGTGGC
TACGTAGTGGGTGGCGGCCGCGGCGAGCTCGTGTCGCCACCGCTGTCTTTGTGTGGTGCACGCGA
GATTCGCTTGCGGCTCCCCTGAAGATTACTAAGATCAAATAACGTCGTGGCACGCGCCATGAAGC
AAACCAACATAGGGGCAGGGGCCGCCGGTTAGATTGCTATTTTGAGACGCACGCGAGCGTAAGCC
CACCGTGGCCACCGCCGATCGCAACCGCGGGTGGCCGCCATGGCCACGCTGCTGTCGTGTCGAGA
TGTGACAGCCTTCTGTGCATACACTTGCCGATCTGGGGTTGCAGGTGACTACAAGTCTCGTGGCA
GGGCATCACGAGCACGTATTGCCACAACACTAAATCAGAGCCATCGCGAGGGGCGCTTTGTGGAC
ACCCGGGCTTATCGGCGTGTTTATCATCGTGTTCATCGGCGTGTT
Right flanking sequence: Indices 66959 -- 67458
CCGATACTAGTGCCAAGAGCGCACTGTTGCCACGGGCGCATCTTGGTAGCAACCGTAGCCAGGAA
CGCGTCTCACATCGTGTGCCTTGCACGTTTACAGTTTGATCGATCGCCATCGCGGTGGCAAACCA
CGGCGCCCTGCCACATGCATATTTTGGTGGCGAAAAGATCGCTATATAATCCGGACAGGCAGACC
CGACCCCAACTCTCGGACGCTTGCTTGCCCTACCCAACACTTACATCACCCCACCTAGGAGGCCC
CCGACACAGCCACCTGCCGCATGACATCTGTCAAAGTGTACGTATACGATCTCAGCCATGGCATG
GCGCGGACGTATGCGCCGATGCTCTTGGGCATCTCTCTCGACGCCATCTACCACACGTCGGTGGT
GGCGTTCGGTAAAGAATACTACATCGACCAGGGCGTCAAACGAAGCGCGCCAGGCACCACCAAGT
ATGGGCTCCCCGTAGAAGTACTCGACATGGGCGAGTCTGAGATTC
Found at i:114383 original size:12 final size:12
Alignment explanation
Indices: 114366--114395 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
114356 CCTCCTCCTC
114366 GGCAGCGGCGGG
1 GGCAGCGGCGGG
114378 GGCAGCGGCGGG
1 GGCAGCGGCGGG
114390 GGCAGC
1 GGCAGC
114396 ACCAGCAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.27, G:0.63, T:0.00
Consensus pattern (12 bp):
GGCAGCGGCGGG
Left flanking sequence: Indices 113866 -- 114365
CATGAACCCAGAAGCAGAACGCCAATGACTTATGACAATCCTTTTGTGCTGAAGCGATATTCTAC
TGGTATATACGGGCACCAGATGTCGCGTGAAAGCCCTATGGCTCTGCCGAAACAATTCAATTCAT
CATCGCTTTCGCATCATCGTCAATATAGCGCTAGCCCACGGAGTCCGTACAGATAATCTATTTCA
ATCGTTAATATGTATGTGCGAGTTTATGTACAAGAGTGAAGAGAAGCATTCTTGACTTATTCAAG
AACAACCTTGGCGCCCAAGCCCTCCAAAGTGGCCTTGATCTTGTCAGCGTCTTCCTTAGCGACGT
TGTCCTTCAACACCTTAGGGGCAGCCTCGACGAATTTCTTGGACTCGACAAGAGACAAGCCAAGC
AAGGACTTCACCTCCTTGATGATCTTGGGCTTAGACTTAGCGTCGAACAGCTCCAACTTGATGGC
GAAGATGGTCTTCTCCTCCTGCTCCTCCTTGGGGGCCTCCTCCTC
Right flanking sequence: Indices 114396 -- 114895
ACCAGCAGCGGGCAAAGCGATGTCGCTGATGTTCAAACGCTCCTTGAGCTCAGTGACCAAGGACG
AAGTTTCCAAAAGCGTCAACTTGGAAATGTCGTCAACGATGGCCGAAATCTTAGGGTCGACCTTA
GACTCAGCGGCAGCAGTCGCATTGTATCTGACAGCGAGTCTCGCCATGGAACCACGCGCCAAACG
CACCGAGGGCTTGAGAGCTTGTCTAATCATTGTGTGCTATGAGTATACACGGACTGAAAAATTTT
CAATCACCTGTCCGCGCGCGAACTTTCTGAGCCGCACAATCCAAGTCGAGACCAACGGCTGTTAA
AGCTTCCACTAGCGCAATGCGTGTGCAGTGTAGTCCACACATAAGTGAGTTGCTTGGAAATTGAA
TTCATCTAACGCCCTTTACGGCATTCAGGTGGCATAAACCATTGAAATATCCTGTGTACGGTGTG
CGGCGCACATTTTGGAATAGATCTTCGAAAAAAAAATCAACATAA
Done.