sallet_2.scaffold.fasta.s72.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold87
Parameters: 2 7 7 80 10 50 500
Length:  132488

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331--431	18	5.6	18	86	6	150	21	17	20	39	1.92
5006--5100	12	7.9	12	98	0	181	25	7	57	9	1.56
9055--9102	12	3.9	12	94	2	78	43	39	0	16	1.48
10190--10215	12	2.2	12	100	0	52	0	0	65	34	0.93
10354--10430	40	1.9	40	94	0	136	32	23	18	25	1.97
14473--14502	12	2.5	12	94	0	51	70	3	26	0	1.03
18303--18339	11	3.4	11	96	0	65	8	29	43	18	1.79
18875--18911	12	3.1	12	88	0	56	16	40	43	0	1.48
18875--18918	12	3.7	12	87	0	52	15	40	40	2	1.60
18988--19015	9	3.1	9	100	0	56	10	32	46	10	1.73
19427--19471	14	3.3	14	82	11	58	20	6	42	31	1.77
19507--19560	26	2.0	27	96	3	101	11	14	33	40	1.82
19511--19574	26	2.4	27	80	12	71	10	21	29	37	1.88
20678--20740	33	1.9	33	83	0	81	36	30	31	1	1.67
22616--22689	6	12.3	6	78	16	64	39	43	14	2	1.60
22616--22689	18	4.1	18	73	13	71	39	43	14	2	1.60
22620--22695	36	2.1	36	90	4	118	39	43	13	3	1.62
22644--22695	12	4.3	12	77	0	50	40	42	11	5	1.65
23887--23938	21	2.3	23	87	6	72	44	21	26	7	1.79
26264--26299	12	3.0	12	91	0	54	8	36	36	19	1.82
26681--26833	27	5.4	27	68	9	117	37	29	26	5	1.80
26637--26846	57	3.7	57	96	0	384	36	30	28	4	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26700--26854	21	8.0	21	60	18	75	37	29	27	5	1.80
30185--30235	10	5.1	10	100	0	102	39	50	9	0	1.35
30182--30248	30	2.3	31	82	17	97	38	52	8	0	1.33
31955--31992	18	2.1	18	90	0	58	23	15	52	7	1.69
32102--32140	12	3.2	12	96	0	69	33	12	25	28	1.93
32131--32163	13	2.5	13	95	0	57	27	12	27	33	1.92
32097--32153	25	2.3	24	81	6	69	31	10	28	29	1.90
32119--32173	13	4.1	14	84	11	55	25	12	29	32	1.93
32241--32331	17	5.4	17	67	15	62	27	19	10	41	1.85
33452--33480	13	2.2	13	100	0	58	31	17	37	13	1.89
34360--34414	21	2.6	21	88	5	76	20	47	1	30	1.60
34838--34863	11	2.4	11	100	0	52	19	65	7	7	1.43
38215--38366	18	8.0	19	78	11	143	38	5	35	21	1.76
38299--38369	20	3.6	19	88	3	88	30	2	40	25	1.70
38223--38369	59	2.6	54	77	13	136	37	4	36	21	1.75
38806--38844	21	1.9	20	89	5	60	17	58	0	23	1.38
39604--39638	12	2.9	12	100	0	70	25	48	17	8	1.75
40984--41016	12	2.8	12	100	0	66	6	15	60	18	1.54
41027--41082	21	2.7	21	91	0	85	32	5	57	5	1.44
41039--41092	18	2.8	18	76	15	54	31	5	55	7	1.51
41685--41743	24	2.3	27	82	11	79	13	28	18	38	1.89
41921--41950	15	1.9	16	93	6	53	20	33	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43081--43120	16	2.4	17	87	4	55	20	25	15	40	1.90
44068--44107	7	5.6	7	82	5	53	52	2	45	0	1.14
44071--44111	4	11.0	4	80	15	52	51	2	46	0	1.14
44078--44107	11	2.7	11	89	0	51	50	3	46	0	1.18
44062--44116	18	3.1	18	87	10	69	52	3	43	0	1.18
44254--44282	10	2.9	10	100	0	58	37	0	51	10	1.36
44478--44553	15	5.2	15	75	12	50	43	1	34	21	1.61
44866--44924	16	3.7	16	88	0	82	35	13	22	28	1.92
44882--44933	16	3.5	15	89	7	63	34	15	21	28	1.94
45051--45103	8	6.5	8	80	10	63	35	26	16	20	1.94
45047--45144	16	5.9	17	73	13	87	30	25	16	27	1.96
45047--45141	34	2.8	33	85	4	111	30	26	14	28	1.95
45964--46027	12	5.3	12	84	0	74	39	23	32	4	1.75
45962--46060	12	8.2	12	78	4	67	33	29	27	10	1.89
46128--46205	12	6.5	12	98	0	147	0	47	8	43	1.34
47576--47617	22	1.9	22	90	0	66	21	14	30	33	1.93
47686--47733	16	3.1	16	96	3	89	16	12	39	31	1.86
47735--47795	10	6.0	10	98	1	113	19	19	29	31	1.97
48251--48309	12	4.6	14	76	16	56	27	8	42	22	1.82
48272--48309	14	2.8	14	92	4	60	26	7	47	18	1.76
48343--48377	16	2.2	16	89	0	52	22	2	37	37	1.69
52298--52332	11	3.2	11	91	0	61	25	45	0	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58794--58832	13	3.0	14	92	7	57	23	30	23	23	1.99
59724--59810	26	3.3	26	90	0	129	21	34	11	32	1.89
59703--59859	13	11.8	13	75	5	116	22	34	10	32	1.89
59703--59838	39	3.4	39	83	2	146	21	35	11	31	1.89
59814--59857	15	2.9	15	86	0	61	22	31	9	36	1.86
59915--59954	13	3.1	13	96	0	71	50	45	0	5	1.23
60269--60312	22	1.9	23	86	9	63	15	47	31	4	1.66
74500--74548	12	4.2	12	78	2	55	34	30	20	14	1.92
74500--74548	24	2.1	24	84	3	64	34	30	20	14	1.92
74634--74682	18	2.7	18	90	0	80	10	51	4	34	1.55
75258--75290	12	2.8	12	95	0	57	0	30	42	27	1.56
75281--75358	9	8.7	9	100	0	156	0	33	44	21	1.53
75413--75449	12	3.3	12	82	17	53	5	35	35	24	1.78
75448--75497	24	2.1	24	88	7	75	10	48	20	22	1.79
76719--76779	26	2.4	25	82	17	74	0	6	63	29	1.19
76808--76842	13	2.7	13	95	0	61	17	0	65	17	1.27
77106--77140	12	2.9	12	91	0	52	2	0	54	42	1.15
77612--77679	18	3.9	18	92	1	104	8	7	38	45	1.63
78182--78242	9	6.8	9	86	0	86	19	37	11	31	1.87
78189--78241	18	2.9	18	97	0	97	16	39	11	32	1.85
80448--80476	9	3.2	9	100	0	58	10	58	10	20	1.60
86345--86422	24	3.2	24	64	10	59	16	7	50	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86684--86753	35	2.0	35	97	0	131	30	25	15	28	1.96
92645--92684	21	1.9	21	89	0	62	27	52	12	7	1.66
99039--99073	12	2.8	13	87	12	56	37	37	25	0	1.57
99047--99075	12	2.4	12	100	0	58	37	41	20	0	1.53
99461--99490	12	2.5	12	100	0	60	0	30	53	16	1.44
106972--106996	12	2.1	12	100	0	50	32	60	8	0	1.26
108040--108089	21	2.4	21	86	0	64	36	16	42	6	1.72
108051--108116	21	3.1	21	86	0	87	33	21	37	7	1.82
111133--111160	12	2.3	12	100	0	56	0	60	7	32	1.24
111908--111955	18	2.7	18	90	0	78	31	41	20	6	1.77
117590--117622	17	1.9	17	100	0	66	30	30	12	27	1.92

Tables:   1

The End!