Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold87
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 132488
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Found at i:344 original size:18 final size:18
Alignment explanation
Indices: 331--431 Score: 150
Period size: 18 Copynumber: 5.6 Consensus size: 18
321 TCGTAGCAAA
331 TCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
349 TCAGA-CTGTCGTAGTATT
1 TCAGATC-GTCGTAGTATT
367 TCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
*
385 TCAGATCATCGTAGTATTT
1 TCAGATCGTCGTAGTA-TT
* *
404 TCCGATTGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
422 TCAGATCGTC
1 TCAGATCGTC
432 ATTCTAGCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.01
18 57 0.77
19 16 0.22
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.40
Consensus pattern (18 bp):
TCAGATCGTCGTAGTATT
Left flanking sequence: Indices 1 -- 330
ACGTAACTTATACTTCGACCTTCAAATAGTTATTTTTGAGTGCATTTTTGGACTTCCGGAATTTT
CTTATTCCGAATAATTATGTAACGACTGTACATGATCCTGTCTCTGTTGTGTATCCGCTATTGTC
TTGTGCCATTAAGGGATTTTCCAATTGGTCCAAGGGCCCTGGAGGTAACGCGAATGATTAGAAGT
CTCGGGGACGAAATGTCCTTAGGCTATTCTCAAACTTTAGAGAAGTAAGAGGTACTTGTTGCTTA
ATTGGACGTGGACATATGAATGAAGAGTTTATTGTGCCAAGGAACTGAGATTAACGATGATCGTA
GCAAA
Right flanking sequence: Indices 432 -- 931
ATTCTAGCAATCGTCAGACTGCCTTTAGTTGTTCCTACCATAATACCTCGTGCTACCCACTACCT
CATTAAGCCTCGTCTACCCCGACCTCACCCAATATCTCATGTCATTACTCTATATCTAAAGATTG
CTCTTGAACGGCGGCGGCAACATCGGCTCGTACACCCGCCCAAACAACTTGTCCTCGGGAATCGA
CCGGTTCATCCACTTCAAGTCCAAGTACGTCTCGTCCAACTGCGAGATCAGCGTCACCCCCAACA
ACCGCATGTTCATCTCCATCTCGTCCTTGAGAATCTGAATCGCCTTGTAGACACCGTCGTCCCCG
TAGGTCGACATCGCGTACAAGAACGGGCGGCCAATGCCCACCCCCTTGGCCCCCAAGCAGATGGC
CTTGAGAATGTCGCCGGCTCTCCGCACCCCGCCGTCGACGTACACCTGGAACTTGTCGGTATCCA
CGCCCCGCTCCCTGAGGATGGGCATCAACTCCGCAAGCACCTGGA
Found at i:5023 original size:12 final size:12
Alignment explanation
Indices: 5006--5100 Score: 181
Period size: 12 Copynumber: 7.9 Consensus size: 12
4996 AAAGAAGAGA
5006 GTAGGCAGAGGG
1 GTAGGCAGAGGG
5018 GTAGGCAGAGGG
1 GTAGGCAGAGGG
5030 GTAGGCAGAGGG
1 GTAGGCAGAGGG
5042 GTAGGCAGAGGG
1 GTAGGCAGAGGG
5054 GTAGGCAGAGGG
1 GTAGGCAGAGGG
5066 GTAGGCAGAGGG
1 GTAGGCAGAGGG
5078 GTAGGCAGAGGG
1 GTAGGCAGAGGG
*
5090 GTAGGTAGAGG
1 GTAGGCAGAGG
5101 AGGGGGTAGA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
12 82 1.00
ACGTcount: A:0.25, C:0.07, G:0.58, T:0.09
Consensus pattern (12 bp):
GTAGGCAGAGGG
Left flanking sequence: Indices 4506 -- 5005
GGAGAAGTTGGCGGCCGGGCGGCTGGCGGCAGCGAGGCTCGACATGATCAACGTGCACGTGGACC
AGTCGTCGCGGCGGGTGGTGATTGACTTTGGCGAGAGCGGGGCGGGCGAGGGCGAGAGTGGTGAC
AAGGGGGTGAACAAGCACGAGCGCAAGCCCGCGGAGCCATTTGTTATTCCGGACAAGGAGTTCAC
GCTCGAGGAGATTGCCAAGCACAACACGCCCGGGGACTGCTGGTGCATCATCAAGAACGTGGTGG
TGGACTTGACGCAGTTTGCGAAGCACCATCCCGGCGGCGAGCACCTGATCACCACCTACGCGGGC
CGCGACGCCACCGAGCTGTTTGTGATGTTGCACGCGGACAACTTTATCCTGAAGTATGTGCCGAA
GAACGTGCTTGGGGTGGTGAAGGGGACCAAGTCCGAGTTGAAGATTTAGGACGCGAGTTGAGGTT
AGGCACAAAGTCCGTAAAAGGTTTAGTAATGAGACAAAGAAGAGA
Right flanking sequence: Indices 5101 -- 5600
AGGGGGTAGACACGGGCAGGGTAAAATAAAAACCCAAGCCAGTGGTTTTTACTGTTGTTTCTGGC
TGTATATTGCTAGTTGAGTGATTAGAAAGTGTGTAGTGGTTCATTTTGGTTGGTTGTATTGCTAG
TTCTATCGAGACTCGAAAGGTATAGTGGCTTTTCGTATTTGTAGGCTCTGTATTGTGGTTCAATT
GCGTAGATTCGAACTGAAAATGTCAGTGACTGTTCATCCTGGTTGGCTAATTATTGCTTGTTTAA
TTGGGTTGACGCGAACCGTAAATCTCAATGTGACTGCTCATTTGGTTGGCTGTAGTGCTAGTTCA
GCCGAGACTCAAATTGGAAACTTCATAGTGGCTTTTGTATTGGTTGGCTATGTACACTGGTTCAA
TTGAGATTCGAATTGGAAAGGTCACAGTGGCTTGTCGTTGGCTATTCTGGTTCAACTAGTTGACT
CGAACTGGAAATTTCATTGTCCGTTCAACTTGGTTGGTTGCATAT
Found at i:9099 original size:13 final size:12
Alignment explanation
Indices: 9055--9102 Score: 78
Period size: 12 Copynumber: 3.9 Consensus size: 12
9045 GACACAATTA
9055 ACCCCTAAACAT
1 ACCCCTAAACAT
9067 ACCCCTAAACAT
1 ACCCCTAAACAT
9079 ACCCCTAAACAT
1 ACCCCTAAACAT
*
9091 AATCCCTAAACA
1 -ACCCCTAAACA
9103 CTGTCTCAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 24 0.71
13 10 0.29
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.17
Consensus pattern (12 bp):
ACCCCTAAACAT
Left flanking sequence: Indices 8555 -- 9054
TGACCGATCCGAAGTCACTATTCAGCCGTTTGATGAACAATCCGCGGGATCTGACCACGACGCGA
CGTGACGCCACGGTTAGCACATGGAGGTTTTATAAACCTCGGCACGAACGCCACAGTAGGGCTTA
CTCGGGGCTTAAAACGGTTGTGGCAGTTTGTGGAGCAGTTGGTGACGTGACCTCCGAAAAAGGAA
AGGTAGCCGGAGAGAGCGCTTTAGGAAATCGTTTCGGATGGGTAGAGGTGACGGTTGACGTGACG
GGGGTACGTGCGATAGTAAGGGGTATCTGCGGGGTTCTACTGTCTCTATTGTCAAACACGATAAG
CATATGGCATTCATGGTAACATCTGACAAATTTTGGCAAATAGCCATATGATCAACTCAACCACT
CCGACAATCAGTGAAAAGCCGTGAGCTTTCCCCGCAGATTAACTGATACGCTCCAAAGCCTCGCC
CCGTGGTGTCTGGTGCCGTGGAAGATAACCATATCGACACAATTA
Right flanking sequence: Indices 9103 -- 9602
CTGTCTCAGCACTTTCGGGGCAATCCTGTTTCCGCAAACTCTGTTTCACCCTACTCTGAGTCGCT
CTGTTCTCTATCGTCTATGCTGTGTATTGTCTACTCCTCATCGCTGCCCTTGATGGCACCGCTCG
CCCATGTCACGTTCATCTGGTCGCCCAACCCCTTCTGAACCATCTCAAACTGCTCTTCCCAGCCC
TGCTGGTCCTTGTCGAGCCCCTGGTACTGCTTCACCGCCACCTCAAGCTCCTCCACCAGCGACAC
ACCCAACACGATCGAGTCGACTCCTGAGCTCTCGGAAAAGGTCCGCGAAAGCGCGTATCTGGTGG
CCACGGTCGCCAACTCCTCTTCGGTAGTCTCGTAAAGCTTGTCAGCCACCTCCTGGACCCGCTTC
TTCAACGTGTCCGGCGCGGGGTGGAACGAATGCGTCGGCTGTCTCCGCAACAAACTCATCAGGAG
AATGGAGCTGTTGAACAAGTGCTGGACTCCCAAGGCCTTGAAGTC
Found at i:10207 original size:12 final size:12
Alignment explanation
Indices: 10190--10215 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10180 GGGTAGTGTT
10190 TGGTGGTGGGTG
1 TGGTGGTGGGTG
10202 TGGTGGTGGGTG
1 TGGTGGTGGGTG
10214 TG
1 TG
10216 ATTTGGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35
Consensus pattern (12 bp):
TGGTGGTGGGTG
Left flanking sequence: Indices 9690 -- 10189
GTACCCGGCCACCTTCAACAAGAACTCGACCGGGTACCCCGAAACCCCGACTCTTTTCACCACCC
CTTCGTCCTTGAGCCGGAAAAGCTCGGCAATGGCCGCGTGGATCTCGTCTTCACTGTTGAACTCT
ACGTCGTGGAGGAAAAGAGCATCGAAATACGTCGTGCCAAGCCGCTGGCACAGCCGGGTCACCAG
CTGGCGGACCCATTCAGGCAGGTAGTCAAACTCGTCTAGTTGAATGCGCCCGACTTTCGTCATCA
AGGTGTAGTTTTCGCGCGGCACCTGGAGCTCGGCCAAAGCAGCGCCAATGATCTCCTCCGAAGGC
CCGTAGTAGGGCAGGGTATCGATGCCCGCGGTGATGGGTCGAGAAAGGGCCGTCCGAAGAATGTC
GGCCACGGGGAGCTGCTGGGGCTCCAGCGAGTACTGGTAGTTGAACACAGCCCCGCCAATCACGA
GCGGGGGGAACGACATTGCTGATCTGTGGAGACTGGGGTAGTGTT
Right flanking sequence: Indices 10216 -- 10715
ATTTGGTTGTGTGCAGGAGAAGGGCTGGTTGAAAAATTGACCAAGAGAAAGAACCAGGTGACGGA
CGCGTTTGGTTGGGTTGACAATGGATCGAAAGATCGGTGGATTTGCAACAGGCAACGGATTACGG
CTGGCAAGGAGTGACGACATTCTCAAACAGTAATTGCCAATTCCATATGAGTGACGACGTTCTCA
AACAGTAATTGCCAGTTCCACATTGGTAACCTGGTCGTAGTCAAGTGGACGGTAGCCAATTAGAG
GGGTGTTCGAATCGCAGGTGACGATACTCGGCCACTGATAGCCGCCGTCAAGGCTTAATTTCTAC
CCCATGGTAAATAACCCCATTGGGCCCATTGTTCGCATCCGTATTATTTAAAGTTCGTCGACAAC
CCTAATTTAGAAAGCCTATCGACTCTCCAGAGCCCATCTGATCCGGGTGAGCGGTGTCTGTCTGA
AGCCCGACACTCGATCCCTGCTGGGCAGGCCTGTCAACGGCCTCC
Found at i:10398 original size:40 final size:40
Alignment explanation
Indices: 10354--10430 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
10344 GGCTGGCAAG
10354 GAGTGACGACATTCTCAAACAGTAATTGCCAATTCCATAT
1 GAGTGACGACATTCTCAAACAGTAATTGCCAATTCCATAT
* *
10394 GAGTGACGACGTTCTCAAACAGTAATTGCCAGTTCCA
1 GAGTGACGACATTCTCAAACAGTAATTGCCAATTCCA
10431 CATTGGTAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
GAGTGACGACATTCTCAAACAGTAATTGCCAATTCCATAT
Left flanking sequence: Indices 9854 -- 10353
TGCCAAGCCGCTGGCACAGCCGGGTCACCAGCTGGCGGACCCATTCAGGCAGGTAGTCAAACTCG
TCTAGTTGAATGCGCCCGACTTTCGTCATCAAGGTGTAGTTTTCGCGCGGCACCTGGAGCTCGGC
CAAAGCAGCGCCAATGATCTCCTCCGAAGGCCCGTAGTAGGGCAGGGTATCGATGCCCGCGGTGA
TGGGTCGAGAAAGGGCCGTCCGAAGAATGTCGGCCACGGGGAGCTGCTGGGGCTCCAGCGAGTAC
TGGTAGTTGAACACAGCCCCGCCAATCACGAGCGGGGGGAACGACATTGCTGATCTGTGGAGACT
GGGGTAGTGTTTGGTGGTGGGTGTGGTGGTGGGTGTGATTTGGTTGTGTGCAGGAGAAGGGCTGG
TTGAAAAATTGACCAAGAGAAAGAACCAGGTGACGGACGCGTTTGGTTGGGTTGACAATGGATCG
AAAGATCGGTGGATTTGCAACAGGCAACGGATTACGGCTGGCAAG
Right flanking sequence: Indices 10431 -- 10930
CATTGGTAACCTGGTCGTAGTCAAGTGGACGGTAGCCAATTAGAGGGGTGTTCGAATCGCAGGTG
ACGATACTCGGCCACTGATAGCCGCCGTCAAGGCTTAATTTCTACCCCATGGTAAATAACCCCAT
TGGGCCCATTGTTCGCATCCGTATTATTTAAAGTTCGTCGACAACCCTAATTTAGAAAGCCTATC
GACTCTCCAGAGCCCATCTGATCCGGGTGAGCGGTGTCTGTCTGAAGCCCGACACTCGATCCCTG
CTGGGCAGGCCTGTCAACGGCCTCCTGGGCTCATACCGACGAACGCGTCTGGTGGGCTGGGTCTA
GGCCCAACCAGGTAAACTGGTTGCATGATCGAAGGGCGCACCAGAGGCGAGGAAGGTTTAATCGA
AGCTAATCGATGAGGGATGGGCGGTACGCAAACGGAGTGGGTGGTAGCATTAGATCTCTACAGTA
ACCCCTCTTCTGTACCCCATTTGCACAGCGATATCTCGCCAACCC
Found at i:14490 original size:12 final size:12
Alignment explanation
Indices: 14473--14502 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14463 CGATGCCAAG
*
14473 AAGAAGAAGAAC
1 AAGAAGAAGAAA
14485 AAGAAGAAGAAA
1 AAGAAGAAGAAA
14497 AAGAAG
1 AAGAAG
14503 CTCTCGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (12 bp):
AAGAAGAAGAAA
Left flanking sequence: Indices 13973 -- 14472
GTATTCTGGACATTACGAATCCAGGAAATACCATTAGGTAGATCGCAAACTACCCGCTATTCCTC
TCAATTCATCCCATTCAACACTCCTATCGCAAACAACCCCCATGCTAAACACATCCGACTATCTC
TAAACGTGTTCCCAGTATCGAAAACCCCTTAACATGCATACTTTTGCTATCCTTCAATCGTACCA
TCCACGTGATCTGCCACGTGACAACAACCATCACAACCAATACCCCCCGTAAACCCCAGTAAAAT
CCCCAAAAAACGTTTTCAATCCACCCCTACCCATTCTCTTCCTCCTACCCCACTACCACCACCCC
TGGTCCCCCATCCCTCACAGACATTCTCCCCACCTTTCCCAGTGCCGCACGAAAATCCACTCACC
CTCCCAAAGACCTCATGTCCGAGCCCACGGAGAAACAAATAGACCCCCAGCCTGAGCCCCAGCCG
GAGTCTCAGCCCGAGACCGTCTCGGCCCAGGCCTCCGATGCCAAG
Right flanking sequence: Indices 14503 -- 15002
CTCTCGCCCATCCTGGCATCGTACCCCGATGGCCACTACCCGGAGGGCCAGTGGATGGAGTACCC
GCTCGAGGTGAACTCCTACCGGACCACGCTGGAGGAAATGCGTCTCCGGGACGAGGACAACGCTG
CCAAGTGGGAGGACTTCCGCAAAGGAGCCGAGATTCATCGCCGGGTCCGCCTCAAGGCCCAGACC
AGTGTGCGTCCGGGGATGGCGATGACGGAGATTGCTGACCTCATTGAGAATGCTACCAGACAGTA
CGCTGGCTCGGTGGCTCCCCTCGAGGCTGGTATTGGCTTTCCTACCGGTTTGTCGGTCAACCATG
TTGCTGCACACTACACCCCCAACACCGGCGACAAGACGGTGCTCCAGAAGGACGACATCATGAAG
GTGGACATTGGTGTGCACGTCAACGGGCGCATTTGCGATTCCGCTTTCACCATGACCTTCAACGA
GGACGAAAAGTACAAGCCTCTCATGGATGCGGTGCGGGAGGCCAC
Found at i:18319 original size:11 final size:11
Alignment explanation
Indices: 18303--18339 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
18293 GCGTAAACGA
18303 GTGCGACTGCG
1 GTGCGACTGCG
18314 GTGCGACTGCG
1 GTGCGACTGCG
*
18325 GTGCCACTGCG
1 GTGCGACTGCG
18336 GTGC
1 GTGC
18340 AACCGCAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.08, C:0.30, G:0.43, T:0.19
Consensus pattern (11 bp):
GTGCGACTGCG
Left flanking sequence: Indices 17803 -- 18302
TGGTGCGCTTCCTCCGTCGCACCGCCCTCCTCCTCCGCGCCCCTCCCCTCCGCAACCGCAAAGCA
ATCGGTGAAAAGTGTGGTTTGCCTTCAGCCAACGCCCACCGAAACCACTCAAGAGACGTCCCAGC
ACAGTCAACGTTAGACGAATACCCGCGCCGCGCCACATTCCGTGGTGACACGCGTGGGCCAGTGC
TAACCTAGACGGAATGCCCGAGGCGTGAGCTTTGAGTGCACCTCAACGGCACCACAAAAGCACCT
CACAAGCCTTCACAGACACCCCACAAACACCTAAGCGCACTTCACAAACCCTATCAGGTCATGTC
CAACGTGGTGCCACCAGGTTCCGTGATCGAGCCCACAGGCCGTGTCGGACCACGGGTGTCTGCGT
GCGTGCTCCAGCGTTTCTGTGTTTGTGCTACGGCAAGGACTACTACGGTTGTGTCGCGGCAGTGC
CACGATACGGCTGTCGAGTGGTGCGTTGAAGTCACGCGTAAACGA
Right flanking sequence: Indices 18340 -- 18839
AACCGCAGCGAGCGGAGGTGCGAAGCGCGATAACGCGACGACAGTAGTGCGAAGCAAGTGCAGTG
CGAGTGCCGAGCAAGTGCAGGACCAACGGGTCCACCAAGACCCGTAGCTTTCGCCACCAGCTGGC
CATTTCGCCCATTATTCATCAATACTAACCTACTAGGTAGCTTTACCAACCAGACCACCGAATAC
TTGACCCTCACGAACAACACCCGGGACCCCCTCGCGTTCAAGGTCAAGACCACCGCCCCCAAGTT
ATACTGCGTGCGTCCCAACGCCGGTCTCGTCGAGCCCGGTGAGGATGTCGAGATCCTGATCATTT
TGCAGGGGTTCTCCCAGCCGTTGCCCGCTGACTACAAGTGCAAGGACAAGTTCTTGATTGTGTCG
CTCCCCGCGCCCGAGATCCGGGACCTGAGCCGAGTGCTGGACGAGTGGTCCCGCTTGGAGCTGAA
GCACGGCGACAAGCTTGTGTCCAAGAAGCTCAGAGTGGCCTACAA
Found at i:18892 original size:12 final size:12
Alignment explanation
Indices: 18875--18911 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
18865 TCCGACTACG
18875 GCCGGGACGACC
1 GCCGGGACGACC
*
18887 GCCGGGAGGACC
1 GCCGGGACGACC
*
18899 GCCGCGACGACC
1 GCCGGGACGACC
18911 G
1 G
18912 TCGCGACCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.16, C:0.41, G:0.43, T:0.00
Consensus pattern (12 bp):
GCCGGGACGACC
Left flanking sequence: Indices 18375 -- 18874
CGACGACAGTAGTGCGAAGCAAGTGCAGTGCGAGTGCCGAGCAAGTGCAGGACCAACGGGTCCAC
CAAGACCCGTAGCTTTCGCCACCAGCTGGCCATTTCGCCCATTATTCATCAATACTAACCTACTA
GGTAGCTTTACCAACCAGACCACCGAATACTTGACCCTCACGAACAACACCCGGGACCCCCTCGC
GTTCAAGGTCAAGACCACCGCCCCCAAGTTATACTGCGTGCGTCCCAACGCCGGTCTCGTCGAGC
CCGGTGAGGATGTCGAGATCCTGATCATTTTGCAGGGGTTCTCCCAGCCGTTGCCCGCTGACTAC
AAGTGCAAGGACAAGTTCTTGATTGTGTCGCTCCCCGCGCCCGAGATCCGGGACCTGAGCCGAGT
GCTGGACGAGTGGTCCCGCTTGGAGCTGAAGCACGGCGACAAGCTTGTGTCCAAGAAGCTCAGAG
TGGCCTACAACGTCACCGACGACGGTGACGACGACTCCGACTACG
Right flanking sequence: Indices 18912 -- 19411
TCGCGACCGCGGCTTGGCCGCTGCCGGCGGTGCTGGCGTCGGTGCTGCTGCTGGTGCTGCCGCCA
GCCGCTCGCGGGGCGACCGTGGCGACCGTGGCGACCGTGACGCCAACGGGCACACCGTGCTCAAC
CAGGTGGACGACCGGTCGCGCGGGGTGGCCCAGGAGCCTCCCCAGCTGGCGTACCAGCAGCCCGC
TGCCCAGCAGCACCAGGCCCCCCCTCCCAGCCAGTACTCTGTGCCCCAGACCAACGGCCAGTCCG
TCCAGGGCGGCGACTACCAGCCGCAAAAGACCATCACCACAGAGCCCGTCCAGGGGATCTCTATA
CAGTTGGCGGCGTTGTTGGCGCTCTTGGCGTTCCTTGCCGGATGGTTGTTGTTCTAAGTGGTCCC
GAGGGGCCTATGGATGGGTGGTGCCGGCTGACGGCTGAAAGGATTGTTATCCCTCTCGTTTGTGT
GGGGATGTGTAAGCCTGTATTTTTTTAAGTAGCGTTGAATGGAGA
Found at i:18916 original size:12 final size:12
Alignment explanation
Indices: 18875--18918 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
18865 TCCGACTACG
*
18875 GCCGGGACGACC
1 GCCGCGACGACC
* *
18887 GCCGGGAGGACC
1 GCCGCGACGACC
18899 GCCGCGACGACC
1 GCCGCGACGACC
*
18911 GTCGCGAC
1 GCCGCGAC
18919 CGCGGCTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.16, C:0.41, G:0.41, T:0.02
Consensus pattern (12 bp):
GCCGCGACGACC
Left flanking sequence: Indices 18375 -- 18874
CGACGACAGTAGTGCGAAGCAAGTGCAGTGCGAGTGCCGAGCAAGTGCAGGACCAACGGGTCCAC
CAAGACCCGTAGCTTTCGCCACCAGCTGGCCATTTCGCCCATTATTCATCAATACTAACCTACTA
GGTAGCTTTACCAACCAGACCACCGAATACTTGACCCTCACGAACAACACCCGGGACCCCCTCGC
GTTCAAGGTCAAGACCACCGCCCCCAAGTTATACTGCGTGCGTCCCAACGCCGGTCTCGTCGAGC
CCGGTGAGGATGTCGAGATCCTGATCATTTTGCAGGGGTTCTCCCAGCCGTTGCCCGCTGACTAC
AAGTGCAAGGACAAGTTCTTGATTGTGTCGCTCCCCGCGCCCGAGATCCGGGACCTGAGCCGAGT
GCTGGACGAGTGGTCCCGCTTGGAGCTGAAGCACGGCGACAAGCTTGTGTCCAAGAAGCTCAGAG
TGGCCTACAACGTCACCGACGACGGTGACGACGACTCCGACTACG
Right flanking sequence: Indices 18919 -- 19418
CGCGGCTTGGCCGCTGCCGGCGGTGCTGGCGTCGGTGCTGCTGCTGGTGCTGCCGCCAGCCGCTC
GCGGGGCGACCGTGGCGACCGTGGCGACCGTGACGCCAACGGGCACACCGTGCTCAACCAGGTGG
ACGACCGGTCGCGCGGGGTGGCCCAGGAGCCTCCCCAGCTGGCGTACCAGCAGCCCGCTGCCCAG
CAGCACCAGGCCCCCCCTCCCAGCCAGTACTCTGTGCCCCAGACCAACGGCCAGTCCGTCCAGGG
CGGCGACTACCAGCCGCAAAAGACCATCACCACAGAGCCCGTCCAGGGGATCTCTATACAGTTGG
CGGCGTTGTTGGCGCTCTTGGCGTTCCTTGCCGGATGGTTGTTGTTCTAAGTGGTCCCGAGGGGC
CTATGGATGGGTGGTGCCGGCTGACGGCTGAAAGGATTGTTATCCCTCTCGTTTGTGTGGGGATG
TGTAAGCCTGTATTTTTTTAAGTAGCGTTGAATGGAGATGTTCAC
Found at i:19002 original size:9 final size:9
Alignment explanation
Indices: 18988--19015 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
18978 CCGCTCGCGG
18988 GGCGACCGT
1 GGCGACCGT
18997 GGCGACCGT
1 GGCGACCGT
19006 GGCGACCGT
1 GGCGACCGT
19015 G
1 G
19016 ACGCCAACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.32, G:0.46, T:0.11
Consensus pattern (9 bp):
GGCGACCGT
Left flanking sequence: Indices 18488 -- 18987
TCAATACTAACCTACTAGGTAGCTTTACCAACCAGACCACCGAATACTTGACCCTCACGAACAAC
ACCCGGGACCCCCTCGCGTTCAAGGTCAAGACCACCGCCCCCAAGTTATACTGCGTGCGTCCCAA
CGCCGGTCTCGTCGAGCCCGGTGAGGATGTCGAGATCCTGATCATTTTGCAGGGGTTCTCCCAGC
CGTTGCCCGCTGACTACAAGTGCAAGGACAAGTTCTTGATTGTGTCGCTCCCCGCGCCCGAGATC
CGGGACCTGAGCCGAGTGCTGGACGAGTGGTCCCGCTTGGAGCTGAAGCACGGCGACAAGCTTGT
GTCCAAGAAGCTCAGAGTGGCCTACAACGTCACCGACGACGGTGACGACGACTCCGACTACGGCC
GGGACGACCGCCGGGAGGACCGCCGCGACGACCGTCGCGACCGCGGCTTGGCCGCTGCCGGCGGT
GCTGGCGTCGGTGCTGCTGCTGGTGCTGCCGCCAGCCGCTCGCGG
Right flanking sequence: Indices 19016 -- 19515
ACGCCAACGGGCACACCGTGCTCAACCAGGTGGACGACCGGTCGCGCGGGGTGGCCCAGGAGCCT
CCCCAGCTGGCGTACCAGCAGCCCGCTGCCCAGCAGCACCAGGCCCCCCCTCCCAGCCAGTACTC
TGTGCCCCAGACCAACGGCCAGTCCGTCCAGGGCGGCGACTACCAGCCGCAAAAGACCATCACCA
CAGAGCCCGTCCAGGGGATCTCTATACAGTTGGCGGCGTTGTTGGCGCTCTTGGCGTTCCTTGCC
GGATGGTTGTTGTTCTAAGTGGTCCCGAGGGGCCTATGGATGGGTGGTGCCGGCTGACGGCTGAA
AGGATTGTTATCCCTCTCGTTTGTGTGGGGATGTGTAAGCCTGTATTTTTTTAAGTAGCGTTGAA
TGGAGATGTTCACAGAGATGTGTAGGTCTAGTGGAAGAGTCTAGTGTGGTAGGTCTAGTGTGGTA
GAGTCAGGTGGCTAGAGACATAGGCTTCTCGCTGTAGGTGCGTTG
Found at i:19463 original size:14 final size:14
Alignment explanation
Indices: 19427--19471 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
19417 ACAGAGATGT
19427 GTAGGTCTA--GTG
1 GTAGGTCTAGTGTG
*
19439 GAAGAGTCTAGTGTG
1 GTAG-GTCTAGTGTG
19454 GTAGGTCTAGTGTG
1 GTAGGTCTAGTGTG
19468 GTAG
1 GTAG
19472 AGTCAGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 3 0.11
13 5 0.18
14 14 0.50
15 6 0.21
ACGTcount: A:0.20, C:0.07, G:0.42, T:0.31
Consensus pattern (14 bp):
GTAGGTCTAGTGTG
Left flanking sequence: Indices 18927 -- 19426
GGCCGCTGCCGGCGGTGCTGGCGTCGGTGCTGCTGCTGGTGCTGCCGCCAGCCGCTCGCGGGGCG
ACCGTGGCGACCGTGGCGACCGTGACGCCAACGGGCACACCGTGCTCAACCAGGTGGACGACCGG
TCGCGCGGGGTGGCCCAGGAGCCTCCCCAGCTGGCGTACCAGCAGCCCGCTGCCCAGCAGCACCA
GGCCCCCCCTCCCAGCCAGTACTCTGTGCCCCAGACCAACGGCCAGTCCGTCCAGGGCGGCGACT
ACCAGCCGCAAAAGACCATCACCACAGAGCCCGTCCAGGGGATCTCTATACAGTTGGCGGCGTTG
TTGGCGCTCTTGGCGTTCCTTGCCGGATGGTTGTTGTTCTAAGTGGTCCCGAGGGGCCTATGGAT
GGGTGGTGCCGGCTGACGGCTGAAAGGATTGTTATCCCTCTCGTTTGTGTGGGGATGTGTAAGCC
TGTATTTTTTTAAGTAGCGTTGAATGGAGATGTTCACAGAGATGT
Right flanking sequence: Indices 19472 -- 19971
AGTCAGGTGGCTAGAGACATAGGCTTCTCGCTGTAGGTGCGTTGCTAGGCTGTGTTTCATATGGT
GCGTTGCTAGCTGTGTTTCATATGCACCCGTGCTGGCTTGTGCTAGCATGCGCTGGGCTGTGCTC
AATGGTGCGGGTATCACGGGTTGTTTCCTCGTGCACGTAAAGAAGATAACTCACATTGGTAAGAA
CCGGCAGTGGCACTGTTTCATCTTGGTACGCATTGACTTCACCGTTGATTGTTTTTGCGACGTGT
TGTACGACAGTATGCTCGTCTACTAATTCCGTCGTCTCATTCAGCGTCTCCTTATTGCCTATTCG
AGAAACAAACTACTCTTCGGTGCGTGGTGGAGGTGCATAGAGGTGTGGAGTTCAGGGGGCCAACA
AGTGGTACATCTCCGTGGGCTCGGGCTGAGCGCAAGTGGACGTCGGCTCCGAGATCACGCGTCGA
AGGTGGGGCCACCTGTTTACGAGTGGAACGTTGGGCTTCGTTTAC
Found at i:19556 original size:26 final size:27
Alignment explanation
Indices: 19507--19560 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
19497 TCTCGCTGTA
19507 GGTGCGTTGCTAGGCTGTGTTTCATAT
1 GGTGCGTTGCTAGGCTGTGTTTCATAT
19534 GGTGCGTTGCTA-GCTGTGTTTCATAT
1 GGTGCGTTGCTAGGCTGTGTTTCATAT
19560 G
1 G
19561 CACCCGTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.11, C:0.15, G:0.33, T:0.41
Consensus pattern (27 bp):
GGTGCGTTGCTAGGCTGTGTTTCATAT
Left flanking sequence: Indices 19007 -- 19506
GCGACCGTGACGCCAACGGGCACACCGTGCTCAACCAGGTGGACGACCGGTCGCGCGGGGTGGCC
CAGGAGCCTCCCCAGCTGGCGTACCAGCAGCCCGCTGCCCAGCAGCACCAGGCCCCCCCTCCCAG
CCAGTACTCTGTGCCCCAGACCAACGGCCAGTCCGTCCAGGGCGGCGACTACCAGCCGCAAAAGA
CCATCACCACAGAGCCCGTCCAGGGGATCTCTATACAGTTGGCGGCGTTGTTGGCGCTCTTGGCG
TTCCTTGCCGGATGGTTGTTGTTCTAAGTGGTCCCGAGGGGCCTATGGATGGGTGGTGCCGGCTG
ACGGCTGAAAGGATTGTTATCCCTCTCGTTTGTGTGGGGATGTGTAAGCCTGTATTTTTTTAAGT
AGCGTTGAATGGAGATGTTCACAGAGATGTGTAGGTCTAGTGGAAGAGTCTAGTGTGGTAGGTCT
AGTGTGGTAGAGTCAGGTGGCTAGAGACATAGGCTTCTCGCTGTA
Right flanking sequence: Indices 19561 -- 20060
CACCCGTGCTGGCTTGTGCTAGCATGCGCTGGGCTGTGCTCAATGGTGCGGGTATCACGGGTTGT
TTCCTCGTGCACGTAAAGAAGATAACTCACATTGGTAAGAACCGGCAGTGGCACTGTTTCATCTT
GGTACGCATTGACTTCACCGTTGATTGTTTTTGCGACGTGTTGTACGACAGTATGCTCGTCTACT
AATTCCGTCGTCTCATTCAGCGTCTCCTTATTGCCTATTCGAGAAACAAACTACTCTTCGGTGCG
TGGTGGAGGTGCATAGAGGTGTGGAGTTCAGGGGGCCAACAAGTGGTACATCTCCGTGGGCTCGG
GCTGAGCGCAAGTGGACGTCGGCTCCGAGATCACGCGTCGAAGGTGGGGCCACCTGTTTACGAGT
GGAACGTTGGGCTTCGTTTACGAGCCGTGGGCGTAAATACGAGCGGAGTTAGACGAGAACGCATC
ACCGCGGTTCCCAGACCGCGACAGCAGTTTGGGTGTAACAAGCTA
Found at i:19570 original size:26 final size:27
Alignment explanation
Indices: 19511--19574 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
19501 GCTGTAGGTG
***
19511 CGTTGCTAGGCTGTGTTTCATATGGTG
1 CGTTGCTAGGCTGTGTTTCATATGACC
19538 CGTTGCTA-GCTGTGTTTCATATGCACC
1 CGTTGCTAGGCTGTGTTTCATATG-ACC
19565 CG-TGCT-GGCT
1 CGTTGCTAGGCT
19575 TGTGCTAGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.11, C:0.22, G:0.30, T:0.38
Consensus pattern (27 bp):
CGTTGCTAGGCTGTGTTTCATATGACC
Left flanking sequence: Indices 19011 -- 19510
CCGTGACGCCAACGGGCACACCGTGCTCAACCAGGTGGACGACCGGTCGCGCGGGGTGGCCCAGG
AGCCTCCCCAGCTGGCGTACCAGCAGCCCGCTGCCCAGCAGCACCAGGCCCCCCCTCCCAGCCAG
TACTCTGTGCCCCAGACCAACGGCCAGTCCGTCCAGGGCGGCGACTACCAGCCGCAAAAGACCAT
CACCACAGAGCCCGTCCAGGGGATCTCTATACAGTTGGCGGCGTTGTTGGCGCTCTTGGCGTTCC
TTGCCGGATGGTTGTTGTTCTAAGTGGTCCCGAGGGGCCTATGGATGGGTGGTGCCGGCTGACGG
CTGAAAGGATTGTTATCCCTCTCGTTTGTGTGGGGATGTGTAAGCCTGTATTTTTTTAAGTAGCG
TTGAATGGAGATGTTCACAGAGATGTGTAGGTCTAGTGGAAGAGTCTAGTGTGGTAGGTCTAGTG
TGGTAGAGTCAGGTGGCTAGAGACATAGGCTTCTCGCTGTAGGTG
Right flanking sequence: Indices 19575 -- 20074
TGTGCTAGCATGCGCTGGGCTGTGCTCAATGGTGCGGGTATCACGGGTTGTTTCCTCGTGCACGT
AAAGAAGATAACTCACATTGGTAAGAACCGGCAGTGGCACTGTTTCATCTTGGTACGCATTGACT
TCACCGTTGATTGTTTTTGCGACGTGTTGTACGACAGTATGCTCGTCTACTAATTCCGTCGTCTC
ATTCAGCGTCTCCTTATTGCCTATTCGAGAAACAAACTACTCTTCGGTGCGTGGTGGAGGTGCAT
AGAGGTGTGGAGTTCAGGGGGCCAACAAGTGGTACATCTCCGTGGGCTCGGGCTGAGCGCAAGTG
GACGTCGGCTCCGAGATCACGCGTCGAAGGTGGGGCCACCTGTTTACGAGTGGAACGTTGGGCTT
CGTTTACGAGCCGTGGGCGTAAATACGAGCGGAGTTAGACGAGAACGCATCACCGCGGTTCCCAG
ACCGCGACAGCAGTTTGGGTGTAACAAGCTACGGGCGTACTCGAC
Found at i:20739 original size:33 final size:33
Alignment explanation
Indices: 20678--20740 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
20668 CCCGCCAAGG
* **
20678 CCAAGCCCAAGCCGGCGAAGGAGACCAAGGTGA
1 CCAAGCCCAAGCCGGCAAAAAAGACCAAGGTGA
* *
20711 CCAAGCCCAAGCGGGCAAAAAAGGCCAAGG
1 CCAAGCCCAAGCCGGCAAAAAAGACCAAGG
20741 AGGTTGCCAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.37, C:0.30, G:0.32, T:0.02
Consensus pattern (33 bp):
CCAAGCCCAAGCCGGCAAAAAAGACCAAGGTGA
Left flanking sequence: Indices 20178 -- 20677
TACGAGCGTAGATAAAAGGGTGTCTGCCCGACAGTTTGCCATGGCTAAATCTAAACACACCGAGC
GCGTACTTGCTCTTCTTGACCAGATCGACAGCCCCGATCTCAGCGAAATCGACACCGATGCTCCT
GCCGAATGGCAAAAGAAGCTTGGGAAAAAGGAGGACATCGGCGACTTTGAGGAGCCGCTGTTGCA
ACCCAAGCTGTTGGTGGGGGTGTCGCTTGTGTTCACCGGCGACTACGAGCGGATTTCCCGCGAAG
AGGCGGTGGCCTTAGTAAAGAAGTTTGGGGCCAAGGCTCCGCTGCTGATCTCCGGTAGCACCAGT
GTGGTGGTGGTGGGGGACAGTCCCGGCCCGTCAAAGATCAAGAAGGTGTTGGAAAAGGGAATTAA
AGCGTTGGACGAAGACGGGTTCTTTCAGTTTTTGGCGCTTGTAGAGGGGTTGCCCGAGCCGGACG
AGGAAGAAGAGGAGGAAAAGCCCAAGAAGAAGAAGCCCGCCAAGG
Right flanking sequence: Indices 20741 -- 21240
AGGTTGCCACCTAGATAAACGAATAGTCAATGAATAAGGAGGTGGGCGAGAAGAGTTGCATTGTG
AGGGATCAAAGTATCGCCCATAACCGAGTTGGGTCCCGGAGAGAACCGTTCAATTGTAGGAGAGT
AACACCAATGGAGGAAGACCTCTCGGCAGTGGCAAGCGATAAGATTTAGTTCGTATTCCTAACGG
TCTTGCTCTCTTCACTTGTGTATTCAATGTTAATAAATAAAAATTGTCGGAATGTAGTAGAAAAT
GTGTTCTCCTTTTACTTAGCTAGTTTGTGGTCTTTTATGAGGGGGAATTCGTTATGGGGTTTTTC
GTCTCGAAGACATACTAAAAGTTGGTACAACGAAGTTCGAGAGAAGAGTGGGCAAGATGAACTTG
TGCCTAATTGGATCCCTGAAGGGGTATATTTCCATCATTTTGAGTCAATGGTTAAATACAAGGTT
GTGGTGTTAATAGCAATTGGTCGTTAAGCATAGCGTTTGTGTCTA
Found at i:22627 original size:6 final size:6
Alignment explanation
Indices: 22616--22689 Score: 64
Period size: 6 Copynumber: 12.3 Consensus size: 6
22606 GCACCGGTGT
*
22616 CAGCAC CAGCAC CAGCAC CAGCAC CAGAAC CAG-AGC CA-CTAC CAGCAC
1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCA-C CAGC-AC CAGCAC
* * *
22664 CA-CTAA CAGCAC CAGAAC CAGAAC CA
1 CAGC-AC CAGCAC CAGCAC CAGCAC CA
22690 CTACCACCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
5 2 0.03
6 53 0.91
7 3 0.05
ACGTcount: A:0.39, C:0.43, G:0.15, T:0.03
Consensus pattern (6 bp):
CAGCAC
Left flanking sequence: Indices 22116 -- 22615
GAGCTCGACCGAGGCGGTGGGGAGGGCGGCGAGGGAGGCGGCACCAGCACCGGCACCAGAGGCAC
CAGAGGCACCGGCACCGGAGGTACCCGCACCCGCGCTGGCCACCACCTGCTGCATGAGGTCCCAC
ACCCCCGTGCTCAACTCAAACCACGCGGTGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAA
GTTGTTGAGCGCCACCAACGCGCGGTTCAACACGAGCAAGCGCCCCTGGTGGGCGATCTCGAACT
TGACCACCTCCACGAGGAACGGGAGCACCTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAA
AGCACCACGGGGCGCTGGAAGTGCGAGATCGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAG
CAGCACCTCCAACGCGCGCAAGTCGGCGCGCGCCGCGGCGGCGGCCTGGGTGGCGCGTTTGGCGG
CGGCCGCCCCTCCGTCGGAGGAGGTGTCAGTGGCGGCACCGGTGT
Right flanking sequence: Indices 22690 -- 23189
CTACCACCACTACCACCACCACTCTGAAGCGGGGCGGTGTCGTTCAACGTCCGGACCACCTCGGC
AAGGTCGATGGTCAGACACGTGGTGTACAACGAGAGCAACACCTCGCCACACGCGGTGTGGTCCG
CGTTCTCCATGGTGTTAAAGCGGATGCCGTCGAGGTAGACGGCGGTCAAGCGGTCGCCCCGCTGG
TCGAGCGCATCGAAGTTGAGGGAGCCCTCGCCCGCCTGGAGCCGCAAGAGCTCGACGAACTGGTC
CAGCTCGGTGGAGAACTCGTAGAGGAAGTCGAGTGCCGCGTGCACCAACCGCTCCAGCACCGGTG
CCGCCAACACCTCGAGCACAAACCGCACGAGCGGGTCGATCTTGGCAAACACCAGCTCGAAAATG
ACCTCGTCGGAGGTGGCCATCACCACCACAAGCAGCAACACGTTCTCGCAGAAGTCGTACGCCAA
CTCGCGCTCGGGCCCCAGGCGGCGCTCCCACTCGGGGCCGAACCC
Found at i:22637 original size:18 final size:18
Alignment explanation
Indices: 22616--22689 Score: 71
Period size: 18 Copynumber: 4.1 Consensus size: 18
22606 GCACCGGTGT
*
22616 CAGCACCAGCACCAGCAC
1 CAGCACCAGCACCAGAAC
* *
22634 CAGCACCAGAACCAGAGC
1 CAGCACCAGCACCAGAAC
*
22652 CA-CTACCAGCACCACTAA-
1 CAGC-ACCAGCACCA-GAAC
*
22670 CAGCACCAGAACCAGAAC
1 CAGCACCAGCACCAGAAC
22688 CA
1 CA
22690 CTACCACCAC
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
17 3 0.07
18 39 0.89
19 2 0.05
ACGTcount: A:0.39, C:0.43, G:0.15, T:0.03
Consensus pattern (18 bp):
CAGCACCAGCACCAGAAC
Left flanking sequence: Indices 22116 -- 22615
GAGCTCGACCGAGGCGGTGGGGAGGGCGGCGAGGGAGGCGGCACCAGCACCGGCACCAGAGGCAC
CAGAGGCACCGGCACCGGAGGTACCCGCACCCGCGCTGGCCACCACCTGCTGCATGAGGTCCCAC
ACCCCCGTGCTCAACTCAAACCACGCGGTGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAA
GTTGTTGAGCGCCACCAACGCGCGGTTCAACACGAGCAAGCGCCCCTGGTGGGCGATCTCGAACT
TGACCACCTCCACGAGGAACGGGAGCACCTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAA
AGCACCACGGGGCGCTGGAAGTGCGAGATCGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAG
CAGCACCTCCAACGCGCGCAAGTCGGCGCGCGCCGCGGCGGCGGCCTGGGTGGCGCGTTTGGCGG
CGGCCGCCCCTCCGTCGGAGGAGGTGTCAGTGGCGGCACCGGTGT
Right flanking sequence: Indices 22690 -- 23189
CTACCACCACTACCACCACCACTCTGAAGCGGGGCGGTGTCGTTCAACGTCCGGACCACCTCGGC
AAGGTCGATGGTCAGACACGTGGTGTACAACGAGAGCAACACCTCGCCACACGCGGTGTGGTCCG
CGTTCTCCATGGTGTTAAAGCGGATGCCGTCGAGGTAGACGGCGGTCAAGCGGTCGCCCCGCTGG
TCGAGCGCATCGAAGTTGAGGGAGCCCTCGCCCGCCTGGAGCCGCAAGAGCTCGACGAACTGGTC
CAGCTCGGTGGAGAACTCGTAGAGGAAGTCGAGTGCCGCGTGCACCAACCGCTCCAGCACCGGTG
CCGCCAACACCTCGAGCACAAACCGCACGAGCGGGTCGATCTTGGCAAACACCAGCTCGAAAATG
ACCTCGTCGGAGGTGGCCATCACCACCACAAGCAGCAACACGTTCTCGCAGAAGTCGTACGCCAA
CTCGCGCTCGGGCCCCAGGCGGCGCTCCCACTCGGGGCCGAACCC
Found at i:22674 original size:36 final size:36
Alignment explanation
Indices: 22620--22695 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
22610 CGGTGTCAGC
* *
22620 ACCAGCACCAGCACCAGCACCAGAACCAGAGCCACT
1 ACCAGCACCAGCAACAGCACCAGAACCAGAACCACT
22656 ACCAGCACCA-CTAACAGCACCAGAACCAGAACCACT
1 ACCAGCACCAGC-AACAGCACCAGAACCAGAACCACT
22692 ACCA
1 ACCA
22696 CCACTACCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 1 0.03
36 36 0.97
ACGTcount: A:0.39, C:0.43, G:0.13, T:0.04
Consensus pattern (36 bp):
ACCAGCACCAGCAACAGCACCAGAACCAGAACCACT
Left flanking sequence: Indices 22120 -- 22619
TCGACCGAGGCGGTGGGGAGGGCGGCGAGGGAGGCGGCACCAGCACCGGCACCAGAGGCACCAGA
GGCACCGGCACCGGAGGTACCCGCACCCGCGCTGGCCACCACCTGCTGCATGAGGTCCCACACCC
CCGTGCTCAACTCAAACCACGCGGTGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAAGTTG
TTGAGCGCCACCAACGCGCGGTTCAACACGAGCAAGCGCCCCTGGTGGGCGATCTCGAACTTGAC
CACCTCCACGAGGAACGGGAGCACCTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAAAGCA
CCACGGGGCGCTGGAAGTGCGAGATCGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAGCAGC
ACCTCCAACGCGCGCAAGTCGGCGCGCGCCGCGGCGGCGGCCTGGGTGGCGCGTTTGGCGGCGGC
CGCCCCTCCGTCGGAGGAGGTGTCAGTGGCGGCACCGGTGTCAGC
Right flanking sequence: Indices 22696 -- 23195
CCACTACCACCACCACTCTGAAGCGGGGCGGTGTCGTTCAACGTCCGGACCACCTCGGCAAGGTC
GATGGTCAGACACGTGGTGTACAACGAGAGCAACACCTCGCCACACGCGGTGTGGTCCGCGTTCT
CCATGGTGTTAAAGCGGATGCCGTCGAGGTAGACGGCGGTCAAGCGGTCGCCCCGCTGGTCGAGC
GCATCGAAGTTGAGGGAGCCCTCGCCCGCCTGGAGCCGCAAGAGCTCGACGAACTGGTCCAGCTC
GGTGGAGAACTCGTAGAGGAAGTCGAGTGCCGCGTGCACCAACCGCTCCAGCACCGGTGCCGCCA
ACACCTCGAGCACAAACCGCACGAGCGGGTCGATCTTGGCAAACACCAGCTCGAAAATGACCTCG
TCGGAGGTGGCCATCACCACCACAAGCAGCAACACGTTCTCGCAGAAGTCGTACGCCAACTCGCG
CTCGGGCCCCAGGCGGCGCTCCCACTCGGGGCCGAACCCCGCCGC
Found at i:22695 original size:12 final size:12
Alignment explanation
Indices: 22644--22695 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
22634 CAGCACCAGA
*
22644 ACCAGAGCCACT
1 ACCAGAACCACT
*
22656 ACCAGCACCACT
1 ACCAGAACCACT
* * **
22668 AACAGCACCAGA
1 ACCAGAACCACT
22680 ACCAGAACCACT
1 ACCAGAACCACT
22692 ACCA
1 ACCA
22696 CCACTACCAC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.40, C:0.42, G:0.12, T:0.06
Consensus pattern (12 bp):
ACCAGAACCACT
Left flanking sequence: Indices 22144 -- 22643
GCGAGGGAGGCGGCACCAGCACCGGCACCAGAGGCACCAGAGGCACCGGCACCGGAGGTACCCGC
ACCCGCGCTGGCCACCACCTGCTGCATGAGGTCCCACACCCCCGTGCTCAACTCAAACCACGCGG
TGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAAGTTGTTGAGCGCCACCAACGCGCGGTTC
AACACGAGCAAGCGCCCCTGGTGGGCGATCTCGAACTTGACCACCTCCACGAGGAACGGGAGCAC
CTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAAAGCACCACGGGGCGCTGGAAGTGCGAGA
TCGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAGCAGCACCTCCAACGCGCGCAAGTCGGCG
CGCGCCGCGGCGGCGGCCTGGGTGGCGCGTTTGGCGGCGGCCGCCCCTCCGTCGGAGGAGGTGTC
AGTGGCGGCACCGGTGTCAGCACCAGCACCAGCACCAGCACCAGA
Right flanking sequence: Indices 22696 -- 23195
CCACTACCACCACCACTCTGAAGCGGGGCGGTGTCGTTCAACGTCCGGACCACCTCGGCAAGGTC
GATGGTCAGACACGTGGTGTACAACGAGAGCAACACCTCGCCACACGCGGTGTGGTCCGCGTTCT
CCATGGTGTTAAAGCGGATGCCGTCGAGGTAGACGGCGGTCAAGCGGTCGCCCCGCTGGTCGAGC
GCATCGAAGTTGAGGGAGCCCTCGCCCGCCTGGAGCCGCAAGAGCTCGACGAACTGGTCCAGCTC
GGTGGAGAACTCGTAGAGGAAGTCGAGTGCCGCGTGCACCAACCGCTCCAGCACCGGTGCCGCCA
ACACCTCGAGCACAAACCGCACGAGCGGGTCGATCTTGGCAAACACCAGCTCGAAAATGACCTCG
TCGGAGGTGGCCATCACCACCACAAGCAGCAACACGTTCTCGCAGAAGTCGTACGCCAACTCGCG
CTCGGGCCCCAGGCGGCGCTCCCACTCGGGGCCGAACCCCGCCGC
Found at i:23911 original size:21 final size:23
Alignment explanation
Indices: 23887--23938 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
23877 TGTGAGTGGC
*
23887 CAGGGCACAGAACAAATG-AAT-
1 CAGGGCACAAAACAAATGAAATG
*
23908 CAGGGCACAAAACGAATGAAATG
1 CAGGGCACAAAACAAATGAAATG
23931 CAGGGCAC
1 CAGGGCAC
23939 GCAACAGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 16 0.59
22 3 0.11
23 8 0.30
ACGTcount: A:0.44, C:0.21, G:0.27, T:0.08
Consensus pattern (23 bp):
CAGGGCACAAAACAAATGAAATG
Left flanking sequence: Indices 23387 -- 23886
GCATGGGTCCGTTTTCGCAGAGCACCCCGAGGGTGCCTATGGCCATGGCCTTTTCTTTGGGGTCC
GCCAGCTTGAGGCGGGCGATGAGGGGGGCCACCTCGGAGGAGGAGGACGCGGCGGAGGTGGCGGC
GGCGATCCCGGCGCCGACGGCGGCGCGGTGCCCCGTGAGCGGGTTGACTCGGGCCCGGGTGTTCT
TTCTGGTTTTCTTTGTCTTCCCCATGGTCGAGGAGGGTGTGGGGGGAGGGTGTAGGGGAGTAGAG
GGAGAGTGGGTGGGTGCGGTGCTTGATCGCGCGATGAGGTGCGGTGCAGGTGGGGGCGGCGAGGG
GGGCCGGGGACGGGGGAAGAGCGCGGGGCTACGGGTGAAAAATGGGTGGCGGGGGAGCCGTGTGG
CGGGTGGGGCTACGGTGGGCGGGTGTTTTGGGTGCGGAGAGACGTGGTTGGTGCGGTAGCGGGGG
GTCTGGCGGCCCTCTCGTAGTGTAGTCAAGTGAACTGTGAGTGGC
Right flanking sequence: Indices 23939 -- 24438
GCAACAGAGACACAATACAGGGCACATAACATAAAAGATGACACAGGGCACACAACAGTAAGGGA
GCAGTTATTAGTAATGGTGGTGAAGAAATCGGGTGATTGAATGGTGTGGATGGTGTGAATGTAAT
TGCGCGCAATTGCGACATGACCGCCTTCTCGTGGTCCGGTAGCCCCCTTGGAGCAAGCGTCCAGT
TACAATAGTTGTTGGTTGTTGCAGTAGGGTACCTTAGGTGACTCCCGGTCAGGCTAGGCACTCAA
CCGCCTGGCTTGGCCCACGCCGGCTCAACACCCACCATCTCAATTTACCTAAACACTCGCGATAC
ACTTGCCCATCAGGCGTCCCTCTACTGGGGACCATCTGCAATCACCATCACCGCCTGCACACAAC
CACCCTGGCAACTTCCCGGTTAGACTCTGGTACCCCCTCGCTCACAACCCACTGCAATGCTCACA
ACAACATTCCCAGGGCCCAGTGACTGTTGCTCCTACAGGCAACCA
Found at i:26299 original size:12 final size:12
Alignment explanation
Indices: 26264--26299 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
26254 TGACGCCATT
* *
26264 GAGTCGGCTGCT
1 GAGTCCGCTGCC
26276 GAGTCCGCTGCC
1 GAGTCCGCTGCC
26288 GAGTCCGCTGCC
1 GAGTCCGCTGCC
26300 TCGTCGGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.08, C:0.36, G:0.36, T:0.19
Consensus pattern (12 bp):
GAGTCCGCTGCC
Left flanking sequence: Indices 25764 -- 26263
TTTCACTGGTGGTTAGTAGACAGCTCTAGAGCCCGAAAAATCCTACTTACATCACGATGGGCTTC
CAGAACTTGATGCCCAGGTACCACGCAAGCACGCCCACGGCGACCACCGTCAACGCTTTCGCTCC
TGCCTGGCTCATTTGTCGTGAAAGAGCTGGCCCCACGAAAAACCCCTTTTCTCCACCCCGGGCCG
CGTAACCCACAACAACCGGGCTCCCAACAGAAACACACCCGCGCTCACAACAGCACCCGGGCTCG
TGGCGAGCAACCGTGCCTTCAGCCCGAAATGGTTGCAAAAATAGAAATGCAAGCAACAGGCGGCC
ACGCCCGGCTCACTATAAAGAGGGGAGCCATGTCGTAGTTTCTCTAACTAATTTTATCCCTTTCG
CTATGCACAGATCTGCCCTTTTGACTATTGCCTTGGCCACCGCCGCCATTGCCACCACCACCGTG
ACCGAGCCCGCTCCCACTGACGACCAGAACGCTACTGACGCCATT
Right flanking sequence: Indices 26300 -- 26799
TCGTCGGTTGCCGAGACCGCCTCCGAGGAGCCCACCGAGACCGAGGAGCAGCCCGCTGAGTCTTC
TCCCGAGGAGTCCCAGGCCGAGCCTTCTCCTTCCGCCACCGAGGGCGGCTCTGGCGACAAGACCG
TCACTGACATCGTCTTCTACTGCCCCGAGACCACCACTGTCACCATCACCACTTGCCAGAACGAC
CAGTGCCAGCCCCACACCACTGAGTGCCCCCCTGGTACCGTGACCATCACCGGTACTTGCGTTGT
GCCCGAGGACTGGCACCCCGAGACCCCTGGTGCTCCCACCGTGACCGTGTTGCCTCCTGGCCACG
GTGGTGACGGTGACGACCACAACGACGGCGACGACAACGACAACGACGGCGCCGAGGGTGACCAC
AACAACGACAACAACGACGGTGACGACAACGACAACGACGGTGCTGAGGGTGACCACAACAACGA
CAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGA
Found at i:26711 original size:27 final size:27
Alignment explanation
Indices: 26681--26833 Score: 117
Period size: 27 Copynumber: 5.4 Consensus size: 27
26671 CGGCGCCGAG
26681 GGTGACCACAACAACGACAACAACGAC
1 GGTGACCACAACAACGACAACAACGAC
* * * * ** *
26708 GGTGACGACAACGACAACGACGGTGCTGAG
1 GGTGACCACAACAACGACAAC--AAC-GAC
26738 GGTGACCACAACAACGACAACAACGAC
1 GGTGACCACAACAACGACAACAACGAC
* ***** *
26765 GGTGACGACAACGACAACGACGGTGCCGAG
1 GGTGAC--C-ACAACAACGACAACAACGAC
26795 GGTGACCACAACAACGACAACAACGAC
1 GGTGACCACAACAACGACAACAACGAC
*
26822 GGTGACGACAAC
1 GGTGACCACAAC
26834 GACAACGACG
Statistics
Matches: 91, Mismatches: 29, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
27 49 0.54
28 2 0.02
29 2 0.02
30 38 0.42
ACGTcount: A:0.38, C:0.29, G:0.27, T:0.06
Consensus pattern (27 bp):
GGTGACCACAACAACGACAACAACGAC
Left flanking sequence: Indices 26181 -- 26680
TTGCCTTGGCCACCGCCGCCATTGCCACCACCACCGTGACCGAGCCCGCTCCCACTGACGACCAG
AACGCTACTGACGCCATTGAGTCGGCTGCTGAGTCCGCTGCCGAGTCCGCTGCCTCGTCGGTTGC
CGAGACCGCCTCCGAGGAGCCCACCGAGACCGAGGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGT
CCCAGGCCGAGCCTTCTCCTTCCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATC
GTCTTCTACTGCCCCGAGACCACCACTGTCACCATCACCACTTGCCAGAACGACCAGTGCCAGCC
CCACACCACTGAGTGCCCCCCTGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACT
GGCACCCCGAGACCCCTGGTGCTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGT
GACGACCACAACGACGGCGACGACAACGACAACGACGGCGCCGAG
Right flanking sequence: Indices 26834 -- 27333
GACAACGACGGTGACGACAACCAGCAGCCTGGTGTCCCCCCTCAGATTGAGGAGAACGCCGCCGT
CAAGGGTGCCGTCGCTGGTGCCGCTGCCCTTGCTGGTTTCGTTGGCTTGATGTTGTAAATTTAGC
TACTATGTTTAACCCCTAGAGGGCCTAATAAAATGTTTAAAATCAAATTGAAATAAATGTAGTAT
GGTTGAAAATTATTCCTACTTGGTGGTTTTGTCGAATCTCCATTTTCACTCTAGTCGGGGGAATA
GGGACGGCTCCTATTTTATGCAGCAATAGTCAACCTTGGAAGCTACCTTCCTATTCGGGACATGT
CAAGCAGGGATAGCTAATAAATCATAGTTAATCACTGGCACCGCAAATAGCCCAGAAAAAATGCC
GAACCCTACAAAAAAAAATCAGAGACCTGGTTAAAAATATGCGTGGGGTTGTAGGGTGCCGTGCT
TCGCGAGGGGTGACGCGCCTGGCATGTTTGGATACGCAGTCAGAG
Found at i:26715 original size:57 final size:57
Alignment explanation
Indices: 26637--26846 Score: 384
Period size: 57 Copynumber: 3.7 Consensus size: 57
26627 GGTGACGGTG
* * *
26637 ACGACCACAACGACGGCGACGACAACGACAACGACGGCGCCGAGGGTGACCACAACA
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
*
26694 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCTGAGGGTGACCACAACA
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
26751 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
26808 ACGACAACAACGACGGTGACGACAACGACAACGACGGTG
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTG
26847 ACGACAACCA
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 148 1.00
ACGTcount: A:0.37, C:0.30, G:0.28, T:0.05
Consensus pattern (57 bp):
ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
Left flanking sequence: Indices 26137 -- 26636
TAATTTTATCCCTTTCGCTATGCACAGATCTGCCCTTTTGACTATTGCCTTGGCCACCGCCGCCA
TTGCCACCACCACCGTGACCGAGCCCGCTCCCACTGACGACCAGAACGCTACTGACGCCATTGAG
TCGGCTGCTGAGTCCGCTGCCGAGTCCGCTGCCTCGTCGGTTGCCGAGACCGCCTCCGAGGAGCC
CACCGAGACCGAGGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGTCCCAGGCCGAGCCTTCTCCTT
CCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATCGTCTTCTACTGCCCCGAGACC
ACCACTGTCACCATCACCACTTGCCAGAACGACCAGTGCCAGCCCCACACCACTGAGTGCCCCCC
TGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACTGGCACCCCGAGACCCCTGGTG
CTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGTG
Right flanking sequence: Indices 26847 -- 27346
ACGACAACCAGCAGCCTGGTGTCCCCCCTCAGATTGAGGAGAACGCCGCCGTCAAGGGTGCCGTC
GCTGGTGCCGCTGCCCTTGCTGGTTTCGTTGGCTTGATGTTGTAAATTTAGCTACTATGTTTAAC
CCCTAGAGGGCCTAATAAAATGTTTAAAATCAAATTGAAATAAATGTAGTATGGTTGAAAATTAT
TCCTACTTGGTGGTTTTGTCGAATCTCCATTTTCACTCTAGTCGGGGGAATAGGGACGGCTCCTA
TTTTATGCAGCAATAGTCAACCTTGGAAGCTACCTTCCTATTCGGGACATGTCAAGCAGGGATAG
CTAATAAATCATAGTTAATCACTGGCACCGCAAATAGCCCAGAAAAAATGCCGAACCCTACAAAA
AAAAATCAGAGACCTGGTTAAAAATATGCGTGGGGTTGTAGGGTGCCGTGCTTCGCGAGGGGTGA
CGCGCCTGGCATGTTTGGATACGCAGTCAGAGTTTAAATGGCCCA
Found at i:26726 original size:21 final size:21
Alignment explanation
Indices: 26700--26854 Score: 75
Period size: 21 Copynumber: 8.0 Consensus size: 21
26690 AACAACGACA
26700 ACAACGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
****
26721 ACAACGACGGTG-CTGAGGGTG
1 ACAACGACGGTGAC-GACAACG
* * *
26742 ACCACAAC---AACGACAAC-
1 ACAACGACGGTGACGACAACG
26759 A-A-CGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
* ****
26778 ACAACGACGGTGCCGAGGGTG
1 ACAACGACGGTGACGACAACG
* * *
26799 ACCACAAC---AACGACAAC-
1 ACAACGACGGTGACGACAACG
26816 A-A-CGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
26835 ACAACGACGGTGACGACAAC
1 ACAACGACGGTGACGACAAC
26855 CAGCAGCCTG
Statistics
Matches: 90, Mismatches: 30, Indels: 28
0.61 0.20 0.19
Matches are distributed among these distances:
15 6 0.07
17 2 0.02
18 21 0.23
19 3 0.03
20 3 0.03
21 55 0.61
ACGTcount: A:0.37, C:0.29, G:0.28, T:0.06
Consensus pattern (21 bp):
ACAACGACGGTGACGACAACG
Left flanking sequence: Indices 26200 -- 26699
CATTGCCACCACCACCGTGACCGAGCCCGCTCCCACTGACGACCAGAACGCTACTGACGCCATTG
AGTCGGCTGCTGAGTCCGCTGCCGAGTCCGCTGCCTCGTCGGTTGCCGAGACCGCCTCCGAGGAG
CCCACCGAGACCGAGGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGTCCCAGGCCGAGCCTTCTCC
TTCCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATCGTCTTCTACTGCCCCGAGA
CCACCACTGTCACCATCACCACTTGCCAGAACGACCAGTGCCAGCCCCACACCACTGAGTGCCCC
CCTGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACTGGCACCCCGAGACCCCTGG
TGCTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGTGACGACCACAACGACGGCG
ACGACAACGACAACGACGGCGCCGAGGGTGACCACAACAACGACA
Right flanking sequence: Indices 26855 -- 27354
CAGCAGCCTGGTGTCCCCCCTCAGATTGAGGAGAACGCCGCCGTCAAGGGTGCCGTCGCTGGTGC
CGCTGCCCTTGCTGGTTTCGTTGGCTTGATGTTGTAAATTTAGCTACTATGTTTAACCCCTAGAG
GGCCTAATAAAATGTTTAAAATCAAATTGAAATAAATGTAGTATGGTTGAAAATTATTCCTACTT
GGTGGTTTTGTCGAATCTCCATTTTCACTCTAGTCGGGGGAATAGGGACGGCTCCTATTTTATGC
AGCAATAGTCAACCTTGGAAGCTACCTTCCTATTCGGGACATGTCAAGCAGGGATAGCTAATAAA
TCATAGTTAATCACTGGCACCGCAAATAGCCCAGAAAAAATGCCGAACCCTACAAAAAAAAATCA
GAGACCTGGTTAAAAATATGCGTGGGGTTGTAGGGTGCCGTGCTTCGCGAGGGGTGACGCGCCTG
GCATGTTTGGATACGCAGTCAGAGTTTAAATGGCCCAGGCCGCGA
Found at i:30198 original size:10 final size:10
Alignment explanation
Indices: 30185--30235 Score: 102
Period size: 10 Copynumber: 5.1 Consensus size: 10
30175 CAGCAGCCCA
30185 CAACCACAGC
1 CAACCACAGC
30195 CAACCACAGC
1 CAACCACAGC
30205 CAACCACAGC
1 CAACCACAGC
30215 CAACCACAGC
1 CAACCACAGC
30225 CAACCACAGC
1 CAACCACAGC
30235 C
1 C
30236 CACAGCCACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 41 1.00
ACGTcount: A:0.39, C:0.51, G:0.10, T:0.00
Consensus pattern (10 bp):
CAACCACAGC
Left flanking sequence: Indices 29685 -- 30184
ACCGAGCCCCCAAGGTTGATGGGGGTAGTGCGTGCCCGAGGCGAGAACGGGGCTTTTAGTAAGTA
GTAAGTGATTTATTGGTTTGTGTTGGTTCGTACGTGGAGGGTGTATCTGAGACGAACCTTCCAGG
GTGGAAACCTTGGGCCACAATGGAGACATACGTAGTGGAAATCTAAAGGGATCAAGAACTAGCCA
GTGTATTCGTAAGGTAGTTTACCAGTATATTCGTAAGGTAGTACCAACCCAAGCAAACCATGTCT
TTACACACGTGACAACACACACGTGATTATACTCGTGATCACCAACACGTGCAAACTTCCATACT
TAAGCAAACCACGAACACCAGTGACTGAAAGTAACACGGGCTCCCTGAGCAGTAATCAAAATCCA
TGCGTACCCACATCGTTTTACGCACCTCATCTTCCTCTTTTTATTCCATAAAAACATAAACCCAA
TAGTTCTCACCATACCCATCAATATCCCACTACCACAGCAGCCCA
Right flanking sequence: Indices 30236 -- 30735
CACAGCCACAACCCACAACACAACACAACACATCACACCCACCTACCCCCCCTCCTATCTACCAC
ACACCCTCCTACCTTCCACCCATTCCACCCTTCCCCCTACCTTCTTCTCCCACCTTTGCAGCAAA
ACACTGCGACTCACCACCAACTACCACCCCACCCGACCCACTGCCGCCCACGCAAGATGACGTTA
AAGCTCAAACTAAACGTCGGAGGGGCCAATTCCGGGGACAATGCACTGAACTCAGGCTCTCCACA
GCCGCCCGCGGCGCTGCTGGCCCTGCCCGCGGCCCCGCTGCCGTCGCTCCCGAAGATCAAAATCA
AGCGACCGAAACCACCGCCCTCAGACGCCCAGAAACCCACCAAGAAACTCAAGATCTCCTTGGGC
GGGGCGAAAAAGCTGCCGATACCGAGCGCCACCCCTAAACAGCGGCTGGCGAAGCCTGCCACCCC
CGGATCTCAACTTCCGAGGGTCCGGATCAAACCGACCCGCGTGCC
Found at i:30252 original size:30 final size:31
Alignment explanation
Indices: 30182--30248 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
30172 CCACAGCAGC
30182 CCACAACCACAGCCAACCACAGCCAACCACAG
1 CCACAACCACAGCCAACCACAGCC-ACCACAG
30214 -C-CAACCACAGCCAACCACAG-C-CCACAG
1 CCACAACCACAGCCAACCACAGCCACCACAG
30241 CCACAACC
1 CCACAACC
30249 CACAACACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
27 6 0.18
28 1 0.03
29 6 0.18
30 19 0.58
31 1 0.03
ACGTcount: A:0.39, C:0.52, G:0.09, T:0.00
Consensus pattern (31 bp):
CCACAACCACAGCCAACCACAGCCACCACAG
Left flanking sequence: Indices 29682 -- 30181
GGGACCGAGCCCCCAAGGTTGATGGGGGTAGTGCGTGCCCGAGGCGAGAACGGGGCTTTTAGTAA
GTAGTAAGTGATTTATTGGTTTGTGTTGGTTCGTACGTGGAGGGTGTATCTGAGACGAACCTTCC
AGGGTGGAAACCTTGGGCCACAATGGAGACATACGTAGTGGAAATCTAAAGGGATCAAGAACTAG
CCAGTGTATTCGTAAGGTAGTTTACCAGTATATTCGTAAGGTAGTACCAACCCAAGCAAACCATG
TCTTTACACACGTGACAACACACACGTGATTATACTCGTGATCACCAACACGTGCAAACTTCCAT
ACTTAAGCAAACCACGAACACCAGTGACTGAAAGTAACACGGGCTCCCTGAGCAGTAATCAAAAT
CCATGCGTACCCACATCGTTTTACGCACCTCATCTTCCTCTTTTTATTCCATAAAAACATAAACC
CAATAGTTCTCACCATACCCATCAATATCCCACTACCACAGCAGC
Right flanking sequence: Indices 30249 -- 30748
CACAACACAACACAACACATCACACCCACCTACCCCCCCTCCTATCTACCACACACCCTCCTACC
TTCCACCCATTCCACCCTTCCCCCTACCTTCTTCTCCCACCTTTGCAGCAAAACACTGCGACTCA
CCACCAACTACCACCCCACCCGACCCACTGCCGCCCACGCAAGATGACGTTAAAGCTCAAACTAA
ACGTCGGAGGGGCCAATTCCGGGGACAATGCACTGAACTCAGGCTCTCCACAGCCGCCCGCGGCG
CTGCTGGCCCTGCCCGCGGCCCCGCTGCCGTCGCTCCCGAAGATCAAAATCAAGCGACCGAAACC
ACCGCCCTCAGACGCCCAGAAACCCACCAAGAAACTCAAGATCTCCTTGGGCGGGGCGAAAAAGC
TGCCGATACCGAGCGCCACCCCTAAACAGCGGCTGGCGAAGCCTGCCACCCCCGGATCTCAACTT
CCGAGGGTCCGGATCAAACCGACCCGCGTGCCGGGCGACGGGTAC
Found at i:31978 original size:18 final size:18
Alignment explanation
Indices: 31955--31992 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
31945 GGATGGTGAT
* *
31955 GATGGCGATGAGGGGGAC
1 GATGGCGACGACGGGGAC
31973 GATGGCGACGACGGGGAC
1 GATGGCGACGACGGGGAC
31991 GA
1 GA
31993 CGGGGATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.53, T:0.08
Consensus pattern (18 bp):
GATGGCGACGACGGGGAC
Left flanking sequence: Indices 31455 -- 31954
CCGCGGGCACGCCCATGGTGGTGGACGACGAGGACGAGTTCGAGGGCGTCAACCTCGAGGAGGAG
CTCAACAAGGTGCTCGACGGGGACGACGAGATGTTTGGCGACGAGCTCGGCGACCTCGTGGACCA
GCAGCCGCCCGAGGAGCTGGACGAGAGTCCCGACGACGACTCGGACGACGAGCCCGGGTCCAACC
AGCACGCCAAGATGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAGCGC
CGGTTGGACCTGGCGACGCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCAA
GGGCTCGTTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACC
CGACCCAGCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAG
GTGGAGGCGCTGGACGAAGACGGCGAGGACGGGGAGGATGGTGAT
Right flanking sequence: Indices 31993 -- 32492
CGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGTTTATAG
AGTAATGAAGAACTAACGGATGGTGGATGGGGGTGTTTGAAGTGGTTGAGAAAACTGTTGAGACA
ACTGTTGAGACAACTGTTTGTGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTTGTCAAC
TCTGTTGGTGGCAATGTAATTGGGATTGTAAAACTCTCATTGTACCCACTGAGATCTTAGTGATT
TCACTATCTTAATGATCAACCGTCTTGTGATTTCACTATCTTAATGATTTAACCATCTCGTGATG
ATTTCACTAACTTACAACGATCTCACTATTATAAGATGGAATGAAGTATCGCTATTTTATAATGA
TTTCACCATTCTATAATAGATTCATTAGTTTATAACGACTTCACTATCTTGAATGAATCCATTAG
CATGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACCGGTT
Found at i:32119 original size:12 final size:12
Alignment explanation
Indices: 32102--32140 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
32092 GTTTGAAGTG
*
32102 GTTGAGAAAACT
1 GTTGAGACAACT
32114 GTTGAGACAACT
1 GTTGAGACAACT
32126 GTTGAGACAACT
1 GTTGAGACAACT
32138 GTT
1 GTT
32141 TGTGACAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (12 bp):
GTTGAGACAACT
Left flanking sequence: Indices 31602 -- 32101
TGGACGAGAGTCCCGACGACGACTCGGACGACGAGCCCGGGTCCAACCAGCACGCCAAGATGTTG
GAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAGCGCCGGTTGGACCTGGCGAC
GCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCAAGGGCTCGTTGGACCACA
AGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCAGCACCAGGGG
GCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGGCGCTGGACGA
AGACGGCGAGGACGGGGAGGATGGTGATGATGGCGATGAGGGGGACGATGGCGACGACGGGGACG
ACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGTTTATA
GAGTAATGAAGAACTAACGGATGGTGGATGGGGGTGTTTGAAGTG
Right flanking sequence: Indices 32141 -- 32640
TGTGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTTGTCAACTCTGTTGGTGGCAATGTA
ATTGGGATTGTAAAACTCTCATTGTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATCA
ACCGTCTTGTGATTTCACTATCTTAATGATTTAACCATCTCGTGATGATTTCACTAACTTACAAC
GATCTCACTATTATAAGATGGAATGAAGTATCGCTATTTTATAATGATTTCACCATTCTATAATA
GATTCATTAGTTTATAACGACTTCACTATCTTGAATGAATCCATTAGCATGGGAGTGATTGGAAA
TGACCGGTGTTGGCTCCCATACCGGTTATGCATCTAACCAAATACGTAGCCTTCGAACTATGAGG
TAGTTACAGGATTGTAAACCTTAATAGGTGACACAAACTACGTGCGGTATTGTTACACTATAGAA
TAGGATTCAGGTGGGAGTCTCCCGACTATTGGGCATCCCATCTCA
Found at i:32153 original size:13 final size:13
Alignment explanation
Indices: 32131--32163 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32121 CAACTGTTGA
*
32131 GACAACTGTTTGT
1 GACAAGTGTTTGT
32144 GACAAGTGTTTGT
1 GACAAGTGTTTGT
32157 GACAAGT
1 GACAAGT
32164 CTGTTGGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (13 bp):
GACAAGTGTTTGT
Left flanking sequence: Indices 31631 -- 32130
GACGAGCCCGGGTCCAACCAGCACGCCAAGATGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGC
GGTGGAGCTGAACAAGCGCCGGTTGGACCTGGCGACGCTGCGGATGATGCGGATGAAGTTCCAGA
ACACGTATAATCTGCTCAAGGGCTCGTTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAG
GAGGAGCGCAAGCACGACCCGACCCAGCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGC
GGCTGCTGGCGTGCAGCAGGTGGAGGCGCTGGACGAAGACGGCGAGGACGGGGAGGATGGTGATG
ATGGCGATGAGGGGGACGATGGCGACGACGGGGACGACGGGGATAACGACATTGACGATTTGTTT
TAGAGCTAGGGGATGACACCCACGGGCTAGTTTATAGAGTAATGAAGAACTAACGGATGGTGGAT
GGGGGTGTTTGAAGTGGTTGAGAAAACTGTTGAGACAACTGTTGA
Right flanking sequence: Indices 32164 -- 32663
CTGTTGGTGAATACTGTTGTCAACTCTGTTGGTGGCAATGTAATTGGGATTGTAAAACTCTCATT
GTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATCAACCGTCTTGTGATTTCACTATCT
TAATGATTTAACCATCTCGTGATGATTTCACTAACTTACAACGATCTCACTATTATAAGATGGAA
TGAAGTATCGCTATTTTATAATGATTTCACCATTCTATAATAGATTCATTAGTTTATAACGACTT
CACTATCTTGAATGAATCCATTAGCATGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACC
GGTTATGCATCTAACCAAATACGTAGCCTTCGAACTATGAGGTAGTTACAGGATTGTAAACCTTA
ATAGGTGACACAAACTACGTGCGGTATTGTTACACTATAGAATAGGATTCAGGTGGGAGTCTCCC
GACTATTGGGCATCCCATCTCATTCCCTAAACGTATTTCGTACCC
Found at i:32153 original size:25 final size:24
Alignment explanation
Indices: 32097--32153 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
32087 GGGGTGTTTG
32097 AAGTGGTTGAGAAAACTGTTGAGAC
1 AAGT-GTTGAGAAAACTGTTGAGAC
* * *
32122 AACTGTTGAGACAACTGTTTGTGAC
1 AAGTGTTGAGAAAACTG-TTGAGAC
32147 AAGTGTT
1 AAGTGTT
32154 TGTGACAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (24 bp):
AAGTGTTGAGAAAACTGTTGAGAC
Left flanking sequence: Indices 31597 -- 32096
GGAGCTGGACGAGAGTCCCGACGACGACTCGGACGACGAGCCCGGGTCCAACCAGCACGCCAAGA
TGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAGCGCCGGTTGGACCTG
GCGACGCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCAAGGGCTCGTTGGA
CCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCAGCACC
AGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGGCGCTG
GACGAAGACGGCGAGGACGGGGAGGATGGTGATGATGGCGATGAGGGGGACGATGGCGACGACGG
GGACGACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGT
TTATAGAGTAATGAAGAACTAACGGATGGTGGATGGGGGTGTTTG
Right flanking sequence: Indices 32154 -- 32653
TGTGACAAGTCTGTTGGTGAATACTGTTGTCAACTCTGTTGGTGGCAATGTAATTGGGATTGTAA
AACTCTCATTGTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATCAACCGTCTTGTGAT
TTCACTATCTTAATGATTTAACCATCTCGTGATGATTTCACTAACTTACAACGATCTCACTATTA
TAAGATGGAATGAAGTATCGCTATTTTATAATGATTTCACCATTCTATAATAGATTCATTAGTTT
ATAACGACTTCACTATCTTGAATGAATCCATTAGCATGGGAGTGATTGGAAATGACCGGTGTTGG
CTCCCATACCGGTTATGCATCTAACCAAATACGTAGCCTTCGAACTATGAGGTAGTTACAGGATT
GTAAACCTTAATAGGTGACACAAACTACGTGCGGTATTGTTACACTATAGAATAGGATTCAGGTG
GGAGTCTCCCGACTATTGGGCATCCCATCTCATTCCCTAAACGTA
Found at i:32173 original size:15 final size:14
Alignment explanation
Indices: 32119--32173 Score: 55
Period size: 13 Copynumber: 4.1 Consensus size: 14
32109 AAACTGTTGA
*
32119 GACAA-CTG-TTGA
1 GACAAGCTGTTTGT
32131 GACAA-CTGTTTGT
1 GACAAGCTGTTTGT
32144 GACAAG-TGTTTGT
1 GACAAGCTGTTTGT
*
32157 GACAAGTCTGTTGGT
1 GACAAG-CTGTTTGT
32172 GA
1 GA
32174 ATACTGTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
12 8 0.22
13 21 0.57
15 8 0.22
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (14 bp):
GACAAGCTGTTTGT
Left flanking sequence: Indices 31619 -- 32118
GACGACTCGGACGACGAGCCCGGGTCCAACCAGCACGCCAAGATGTTGGAGGAGGAGATCGCGGA
CTTGGAGCAGGCGGTGGAGCTGAACAAGCGCCGGTTGGACCTGGCGACGCTGCGGATGATGCGGA
TGAAGTTCCAGAACACGTATAATCTGCTCAAGGGCTCGTTGGACCACAAGAAGCGCGCGCTCGCC
AAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCAGCACCAGGGGGCGCTGGCGCTGGCGGC
GGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGGCGCTGGACGAAGACGGCGAGGACGGGG
AGGATGGTGATGATGGCGATGAGGGGGACGATGGCGACGACGGGGACGACGGGGATAACGACATT
GACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGTTTATAGAGTAATGAAGAACTAA
CGGATGGTGGATGGGGGTGTTTGAAGTGGTTGAGAAAACTGTTGA
Right flanking sequence: Indices 32174 -- 32673
ATACTGTTGTCAACTCTGTTGGTGGCAATGTAATTGGGATTGTAAAACTCTCATTGTACCCACTG
AGATCTTAGTGATTTCACTATCTTAATGATCAACCGTCTTGTGATTTCACTATCTTAATGATTTA
ACCATCTCGTGATGATTTCACTAACTTACAACGATCTCACTATTATAAGATGGAATGAAGTATCG
CTATTTTATAATGATTTCACCATTCTATAATAGATTCATTAGTTTATAACGACTTCACTATCTTG
AATGAATCCATTAGCATGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACCGGTTATGCAT
CTAACCAAATACGTAGCCTTCGAACTATGAGGTAGTTACAGGATTGTAAACCTTAATAGGTGACA
CAAACTACGTGCGGTATTGTTACACTATAGAATAGGATTCAGGTGGGAGTCTCCCGACTATTGGG
CATCCCATCTCATTCCCTAAACGTATTTCGTACCCTTCGATCTGA
Found at i:32263 original size:17 final size:17
Alignment explanation
Indices: 32241--32331 Score: 62
Period size: 17 Copynumber: 5.4 Consensus size: 17
32231 ACCCACTGAG
*
32241 ATCTTAGTGATTTCACT
1 ATCTTAATGATTTCACT
*
32258 ATCTTAATGA--TCAACC
1 ATCTTAATGATTTC-ACT
* *
32274 GTCTT-GTGATTTCACT
1 ATCTTAATGATTTCACT
* *
32290 ATCTTAATGATTTAACC
1 ATCTTAATGATTTCACT
*
32307 ATCTCGTGATGATTTCACT
1 ATCT--TAATGATTTCACT
*
32326 AACTTA
1 ATCTTA
32332 CAACGATCTC
Statistics
Matches: 54, Mismatches: 14, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
15 5 0.09
16 12 0.22
17 24 0.44
19 13 0.24
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (17 bp):
ATCTTAATGATTTCACT
Left flanking sequence: Indices 31741 -- 32240
GATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCAAGGGCTCGTTGGACCACAAGAAGCGCG
CGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCAGCACCAGGGGGCGCTGGCG
CTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGGCGCTGGACGAAGACGGCGA
GGACGGGGAGGATGGTGATGATGGCGATGAGGGGGACGATGGCGACGACGGGGACGACGGGGATA
ACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGTTTATAGAGTAATGA
AGAACTAACGGATGGTGGATGGGGGTGTTTGAAGTGGTTGAGAAAACTGTTGAGACAACTGTTGA
GACAACTGTTTGTGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTTGTCAACTCTGTTGG
TGGCAATGTAATTGGGATTGTAAAACTCTCATTGTACCCACTGAG
Right flanking sequence: Indices 32332 -- 32831
CAACGATCTCACTATTATAAGATGGAATGAAGTATCGCTATTTTATAATGATTTCACCATTCTAT
AATAGATTCATTAGTTTATAACGACTTCACTATCTTGAATGAATCCATTAGCATGGGAGTGATTG
GAAATGACCGGTGTTGGCTCCCATACCGGTTATGCATCTAACCAAATACGTAGCCTTCGAACTAT
GAGGTAGTTACAGGATTGTAAACCTTAATAGGTGACACAAACTACGTGCGGTATTGTTACACTAT
AGAATAGGATTCAGGTGGGAGTCTCCCGACTATTGGGCATCCCATCTCATTCCCTAAACGTATTT
CGTACCCTTCGATCTGAGTAAGAGATCCACCATGGCTAAGAACGACAGGAAAATCACCGACGGTG
CCTTTTATCCTTGCTCCTGACCCTGAAGTCGGGTCCCAACAACCTGAATTCTACTCTGGCGTCAG
TCAACTCAGGCTCGACAGATTGATTGTTGGCTCTCATATACCTGG
Found at i:33470 original size:13 final size:13
Alignment explanation
Indices: 33452--33480 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
33442 ACAACTCTAA
33452 GCAGCTATAAGGG
1 GCAGCTATAAGGG
33465 GCAGCTATAAGGG
1 GCAGCTATAAGGG
33478 GCA
1 GCA
33481 CGGCGTGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.38, T:0.14
Consensus pattern (13 bp):
GCAGCTATAAGGG
Left flanking sequence: Indices 32952 -- 33451
CAATCACCTCCTCCTGCTTGTGGGTCCCAAACTCGTTCTCCAACTCCTCCTTCAGCGCCTCCTGG
TTGATATCCTCCAGGCCCCGTTGCCGCGACACAAACACCTTGTAGATCTCCACCACCTCGTTCAA
CAGCTCGTGCTTGCCGTGCTTGAACGCCTCGGCTTTACCCTTGTCCTCGATGATGACCGCGAAGT
CAGCGTCCTTGCCCTTGTAGAAACAGTATTCCGGCATTGGTGGTGGTGCGGAGATTTGCTGTCTT
ATAAGCTCTGGTTTGAGCACTGGAGCTTGCTATTGCTACGGACCCGTGGGGTAGAGTAGGGAGGC
AAAAGGAGTAGAGATATGCGATTGTGTCACATTTTGGTATTGTGGCTCCACATTTGATCGCAAAC
CGTGGTCTCGTTTCTCGTTTCTCGTCTCGTTTCAAATCGTGTTTCAGAAACATTCTCACACCGAA
ACTGTTGCAGATTACCGAAAGCGAACGGTAAAGGGACAACTCTAA
Right flanking sequence: Indices 33481 -- 33980
CGGCGTGTCCTAGTCCCCATCAATGTGGTCTCCCTTCGCGTGTATGGTTGCTTTGCAGTGCTTCA
CCCTTGCCCGGCTTATTTTCGCCTATTGCACCGGACAGAGACCACCGCTACGCAAGAGTATGTCC
GCTGGGTTTCGCTGGGGAACCGCGGTGGGTTTGGGTGCCGCCTTCTTTATGGTGCTGGTTTAATA
GTCAATGCATGGTTACAACAGAACAAGTCCGTAAAAGCCCAGACTGCCGTAGATCGGTGTTTGAA
CGCACCCCTGGCCGCATACCCCTGGCTGCCCTGGCCACACACCCAACCGCCAAGACCATTCCCAC
CCTACACTACCCGATTCGTCTGGCAAAGGGCCCACCGCGGCCTCGCGCTCGCGTTTCAACTCTAC
GGCTGCAAACTACCTAATCGGGACAGCAAAGGGGACCCACCCACCAGGTATAAAACCACGGGCCA
CCACGCTGAAAACCCCATCAACCATGAAGTTCTCCACTGCCTTTG
Found at i:34386 original size:21 final size:21
Alignment explanation
Indices: 34360--34414 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
34350 CCACCCATCT
34360 CCTAATCTCCCCAT-CTATATC
1 CCTAATCTCCCCATGC-ATATC
*
34381 CCTAATCTCCCCATGCATCTC
1 CCTAATCTCCCCATGCATATC
*
34402 CCTATTCTCCCCA
1 CCTAATCTCCCCA
34415 CCCACTTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 30 0.97
22 1 0.03
ACGTcount: A:0.20, C:0.47, G:0.02, T:0.31
Consensus pattern (21 bp):
CCTAATCTCCCCATGCATATC
Left flanking sequence: Indices 33860 -- 34359
TTCAACTCTACGGCTGCAAACTACCTAATCGGGACAGCAAAGGGGACCCACCCACCAGGTATAAA
ACCACGGGCCACCACGCTGAAAACCCCATCAACCATGAAGTTCTCCACTGCCTTTGCCGCTTGCC
TCGCTGCCGTCTCCGCCGTCGCTGTCCCCAAGACGTTTGTCCTCAAGGAGGGGGAGGTGGCGTAC
CTTGCCAAGAACGAGAAGGGCGAGCAGGCGATTGTGATTGTCGAGCCCGAGGCTGCCCAGGAGGG
CATGGCCAAGCGCTGGTCGTGGTTGGACTGGAGAATGTTCGAGCCGATCTGTTAGGTCATAGCTA
CTTTTATCTGCTAAGTACTGAATAAACGAATCGTCGATTCAAGGAATGTAGACAAAGCCGGCATC
GACCCCACTTTTTGTCCATTTACGGCTTTGTGGGGCTTAGTCTGTCACAAGACACCACGACCCCA
CATCCACCACTCTTCCTGTTCGACTCCCTACTCTCCCACCCATCT
Right flanking sequence: Indices 34415 -- 34914
CCCACTTCTTTGCCACTTTTCCATTCGCCCGATCAGCTGAAAATCAACCCCAGACCCCAGATCCC
AACATCCATTTTAACCGAGGCCGAGGCGGGGGGCGAGTGGCGACGCCAAGTGTGGCGGCCCCACA
GAAAAAAGACCATAAACACACGAAACTACGGTACCGAGTAAACACTCGAGCCCGGAAACAGCCCC
GTCTACCCACAATTGACCCCTCCCGCTCTCCCGTCGTCCCGGTTTCCCCCATCCCGATAAACGTT
TTCCCAGGGCCCGCAACCGTTACACGCCAGCGCTCATAACGCTCGCAAACGGTTATCCCTACCAA
TGGCAATCGCCAGATACAGCGCCCCCCGTTCATGGCGCTGACCAACACACGCTACCAAACGGCTC
TAAAAATCCACTAACGCACCCCACCCCCCACCCCACCCCCATCGCACCCCCATCGCACCATCCTC
GTACTTCCACTCCTTGCGTACCTACCCCGTCTTCGCACCAACATT
Found at i:34857 original size:11 final size:11
Alignment explanation
Indices: 34838--34863 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
34828 CCCCCCACCC
34838 CACCCCCATCG
1 CACCCCCATCG
34849 CACCCCCATCG
1 CACCCCCATCG
34860 CACC
1 CACC
34864 ATCCTCGTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.65, G:0.08, T:0.08
Consensus pattern (11 bp):
CACCCCCATCG
Left flanking sequence: Indices 34338 -- 34837
CTCCCTACTCTCCCACCCATCTCCTAATCTCCCCATCTATATCCCTAATCTCCCCATGCATCTCC
CTATTCTCCCCACCCACTTCTTTGCCACTTTTCCATTCGCCCGATCAGCTGAAAATCAACCCCAG
ACCCCAGATCCCAACATCCATTTTAACCGAGGCCGAGGCGGGGGGCGAGTGGCGACGCCAAGTGT
GGCGGCCCCACAGAAAAAAGACCATAAACACACGAAACTACGGTACCGAGTAAACACTCGAGCCC
GGAAACAGCCCCGTCTACCCACAATTGACCCCTCCCGCTCTCCCGTCGTCCCGGTTTCCCCCATC
CCGATAAACGTTTTCCCAGGGCCCGCAACCGTTACACGCCAGCGCTCATAACGCTCGCAAACGGT
TATCCCTACCAATGGCAATCGCCAGATACAGCGCCCCCCGTTCATGGCGCTGACCAACACACGCT
ACCAAACGGCTCTAAAAATCCACTAACGCACCCCACCCCCCACCC
Right flanking sequence: Indices 34864 -- 35363
ATCCTCGTACTTCCACTCCTTGCGTACCTACCCCGTCTTCGCACCAACATTCGCACGTGCAAACG
GTCAGGAGGCCAACCGAGGAAGGACCACCACGCCCACCACGGCCACGCCGGCCACAGCGCCCAGT
ACAACCCTCTACTCTCCCTCCCCCCTACCCACCACACCCACCCGAGCCCGCCAGCTCCCCGCGCC
CGTCCCGACCCCCCCTCCTTTTTCACATGATCGCAACTACCCCACAACTATATATAGTGAAAAGT
CTTGCCCAAACCGTAACCACCATGACCACTCTCGAACTCGCGGCCGCCGCCGTCATGGGCTCGCA
GTTGATCGAGGCCAAGTACCACGTCAAGGAGGACGTGCTCCTCGCACAGAAGACCGTGCGCGAGG
CCCTCCCCTTCCTCTACCGCACCTACCGCGGGCGGGTGTCGTACTGGTACCCGTTTGAGGACGCT
GCGCGCAAGTACAAGAACAAGCCCGCGGTGCTGTTTCCCCGCCCG
Found at i:38242 original size:18 final size:19
Alignment explanation
Indices: 38215--38366 Score: 143
Period size: 18 Copynumber: 8.0 Consensus size: 19
38205 GGCGATTGCA
*
38215 GGGAATCAAAGTGTAGAAT
1 GGGAAGCAAAGTGTAGAAT
38234 -GGAAGCAAAGTGTAGAAT
1 GGGAAGCAAAGTGTAGAAT
38252 -GGAAGCAAAGTGTAGAAT
1 GGGAAGCAAAGTGTAGAAT
38270 GGGAAGC-AAGTGTAGAACT
1 GGGAAGCAAAGTGTAGAA-T
* * * * *
38289 AGGAAACTATGTGTAGTATT
1 GGGAAGCAAAGTGTAG-AAT
* * *
38309 GGGAGGCAGAGTGTAGGATT
1 GGGAAGCAAAGTGTA-GAAT
38329 GGGAAGC-AAGTGTAGAATT
1 GGGAAGCAAAGTGTAGAA-T
38348 GGGAATG-AAAGTGTAGAAT
1 GGGAA-GCAAAGTGTAGAAT
38367 TGGTCACGGC
Statistics
Matches: 111, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
18 47 0.42
19 25 0.23
20 37 0.33
21 2 0.02
ACGTcount: A:0.38, C:0.05, G:0.36, T:0.21
Consensus pattern (19 bp):
GGGAAGCAAAGTGTAGAAT
Left flanking sequence: Indices 37715 -- 38214
TGTGCTTATAAATTTCTTGTCTCATCAGGAGTAACGTACGGGAATGGGCTGTTGTGTGGTTTCTA
GTGTTGCCTGGTTGAAAATCAGTGATTCACAGCTCCACTGCGGTTTGCATTCGGAATTGCAAGTG
ATGCCGAGGAACCGTTTGATGGTGATTCGATTTTAAAGTTAGCCAAGATGAGACGGCTGCGGTAC
ACGACGCGAACCACAGAGTGAAGACGAACCTTTTTAAAAGAGGCCAATGGATCATGATTAGCGCG
GAGCTTTTCATGCCACACAATCTCAACTGGAAAATGATAAACTGTATTTTGGACGTTCAAGTGCT
TAGGTCGTTCCCATGATGATAACCCCAATGCCTACGTTATTGTTTTCTGGCGCATGTGCCTAAGA
AGTACGGCAGGGGCAAGCCGTTGCATTTGGTTGAGTGAACCACGCGTTATTGGCCGTGGTCGCTA
GAGACTTCACTTGCAGGCGGGTGCAGCCCTTTGCAGGCGATTGCA
Right flanking sequence: Indices 38367 -- 38866
TGGTCACGGCTAGCGTAGAGCAAAGTGTAGAATTGGTTACGGCTAGCATGTATTGGTAATGCCGT
AGGTGGTTGTCTACAATAGTTGGTAAGTCAATAATCTTTTGTCACCAACCAACCCTGACGAGATA
GTCTGAAATGACATATGTGACTAGCGAACTGTCGGGAATATTGTGGATGTTAGCCGAGACATACG
GTGTTTAGAGTGTCATCCAATGACACAACTAGCTCAAGCGTAAACTAGCATGTAATCAGTCAGTA
CTACCAACCACTCAAACGACCCTTCACTTTCACCTTCTCGTCTAATTTAATCAGCTTTTCTTTCC
TTTAGCTAATGTGATTCAGCATCAGTTACCAAATGCCTGTTGAAATTCATGCCTCTTCTACCACC
CTTGCTTGCATCCCTGCCTCCCACCACCCTTGCTTGTTAACATTCATGCTTCTCCCACCACCCTC
CACTATTCTCCTACCACCCCCACCACCCTCCACTTACACCAAATT
Found at i:38322 original size:20 final size:19
Alignment explanation
Indices: 38299--38369 Score: 88
Period size: 20 Copynumber: 3.6 Consensus size: 19
38289 AGGAAACTAT
* *
38299 GTGTAGTATTGGGAGGCAGA
1 GTGTAGAATTGGGAAGCA-A
*
38319 GTGTAGGATTGGGAAGCAA
1 GTGTAGAATTGGGAAGCAA
*
38338 GTGTAGAATTGGGAATGAAA
1 GTGTAGAATTGGGAA-GCAA
38358 GTGTAGAATTGG
1 GTGTAGAATTGG
38370 TCACGGCTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.33
20 31 0.67
ACGTcount: A:0.31, C:0.03, G:0.41, T:0.25
Consensus pattern (19 bp):
GTGTAGAATTGGGAAGCAA
Left flanking sequence: Indices 37799 -- 38298
CAGTGATTCACAGCTCCACTGCGGTTTGCATTCGGAATTGCAAGTGATGCCGAGGAACCGTTTGA
TGGTGATTCGATTTTAAAGTTAGCCAAGATGAGACGGCTGCGGTACACGACGCGAACCACAGAGT
GAAGACGAACCTTTTTAAAAGAGGCCAATGGATCATGATTAGCGCGGAGCTTTTCATGCCACACA
ATCTCAACTGGAAAATGATAAACTGTATTTTGGACGTTCAAGTGCTTAGGTCGTTCCCATGATGA
TAACCCCAATGCCTACGTTATTGTTTTCTGGCGCATGTGCCTAAGAAGTACGGCAGGGGCAAGCC
GTTGCATTTGGTTGAGTGAACCACGCGTTATTGGCCGTGGTCGCTAGAGACTTCACTTGCAGGCG
GGTGCAGCCCTTTGCAGGCGATTGCAGGGAATCAAAGTGTAGAATGGAAGCAAAGTGTAGAATGG
AAGCAAAGTGTAGAATGGGAAGCAAGTGTAGAACTAGGAAACTAT
Right flanking sequence: Indices 38370 -- 38869
TCACGGCTAGCGTAGAGCAAAGTGTAGAATTGGTTACGGCTAGCATGTATTGGTAATGCCGTAGG
TGGTTGTCTACAATAGTTGGTAAGTCAATAATCTTTTGTCACCAACCAACCCTGACGAGATAGTC
TGAAATGACATATGTGACTAGCGAACTGTCGGGAATATTGTGGATGTTAGCCGAGACATACGGTG
TTTAGAGTGTCATCCAATGACACAACTAGCTCAAGCGTAAACTAGCATGTAATCAGTCAGTACTA
CCAACCACTCAAACGACCCTTCACTTTCACCTTCTCGTCTAATTTAATCAGCTTTTCTTTCCTTT
AGCTAATGTGATTCAGCATCAGTTACCAAATGCCTGTTGAAATTCATGCCTCTTCTACCACCCTT
GCTTGCATCCCTGCCTCCCACCACCCTTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAC
TATTCTCCTACCACCCCCACCACCCTCCACTTACACCAAATTCTA
Found at i:38362 original size:59 final size:54
Alignment explanation
Indices: 38223--38369 Score: 136
Period size: 59 Copynumber: 2.6 Consensus size: 54
38213 CAGGGAATCA
*
38223 AAGTGTAGAATGGAAGCAAAGTGTAGAAT-GGAAGCAAAGTGTAGAATGGGAAGC
1 AAGTGTAGAATGGAAG-AAAGTGTAGATTGGGAAGCAAAGTGTAGAATGGGAAGC
* * * *
38277 AAGTGTAGAACTAGGAA-ACTATGTGTAGTATTGGGAGGCAGAGTGTAGGATTGGGAAGC
1 AAGTGTAGAA-T-GGAAGA--AAGTGTAG-ATTGGGAAGCAAAGTGTA-GAATGGGAAGC
38336 AAGTGTAGAATTGGGAATGAAAGTGTAGAATTGG
1 AAGTGTAGAA-T-GGAA-GAAAGTGTAG-ATTGG
38370 TCACGGCTAG
Statistics
Matches: 75, Mismatches: 9, Indels: 13
0.77 0.09 0.13
Matches are distributed among these distances:
54 11 0.15
55 1 0.01
56 11 0.15
57 2 0.03
58 12 0.16
59 37 0.49
61 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.36, T:0.22
Consensus pattern (54 bp):
AAGTGTAGAATGGAAGAAAGTGTAGATTGGGAAGCAAAGTGTAGAATGGGAAGC
Left flanking sequence: Indices 37723 -- 38222
TAAATTTCTTGTCTCATCAGGAGTAACGTACGGGAATGGGCTGTTGTGTGGTTTCTAGTGTTGCC
TGGTTGAAAATCAGTGATTCACAGCTCCACTGCGGTTTGCATTCGGAATTGCAAGTGATGCCGAG
GAACCGTTTGATGGTGATTCGATTTTAAAGTTAGCCAAGATGAGACGGCTGCGGTACACGACGCG
AACCACAGAGTGAAGACGAACCTTTTTAAAAGAGGCCAATGGATCATGATTAGCGCGGAGCTTTT
CATGCCACACAATCTCAACTGGAAAATGATAAACTGTATTTTGGACGTTCAAGTGCTTAGGTCGT
TCCCATGATGATAACCCCAATGCCTACGTTATTGTTTTCTGGCGCATGTGCCTAAGAAGTACGGC
AGGGGCAAGCCGTTGCATTTGGTTGAGTGAACCACGCGTTATTGGCCGTGGTCGCTAGAGACTTC
ACTTGCAGGCGGGTGCAGCCCTTTGCAGGCGATTGCAGGGAATCA
Right flanking sequence: Indices 38370 -- 38869
TCACGGCTAGCGTAGAGCAAAGTGTAGAATTGGTTACGGCTAGCATGTATTGGTAATGCCGTAGG
TGGTTGTCTACAATAGTTGGTAAGTCAATAATCTTTTGTCACCAACCAACCCTGACGAGATAGTC
TGAAATGACATATGTGACTAGCGAACTGTCGGGAATATTGTGGATGTTAGCCGAGACATACGGTG
TTTAGAGTGTCATCCAATGACACAACTAGCTCAAGCGTAAACTAGCATGTAATCAGTCAGTACTA
CCAACCACTCAAACGACCCTTCACTTTCACCTTCTCGTCTAATTTAATCAGCTTTTCTTTCCTTT
AGCTAATGTGATTCAGCATCAGTTACCAAATGCCTGTTGAAATTCATGCCTCTTCTACCACCCTT
GCTTGCATCCCTGCCTCCCACCACCCTTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAC
TATTCTCCTACCACCCCCACCACCCTCCACTTACACCAAATTCTA
Found at i:38832 original size:21 final size:20
Alignment explanation
Indices: 38806--38844 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
38796 ACATTCATGC
38806 TTCTCCCACCACCCTCCACTA
1 TTCTCCCACCACCC-CCACTA
*
38827 TTCTCCTACCACCCCCAC
1 TTCTCCCACCACCCCCAC
38845 CACCCTCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.59, G:0.00, T:0.23
Consensus pattern (20 bp):
TTCTCCCACCACCCCCACTA
Left flanking sequence: Indices 38306 -- 38805
ATTGGGAGGCAGAGTGTAGGATTGGGAAGCAAGTGTAGAATTGGGAATGAAAGTGTAGAATTGGT
CACGGCTAGCGTAGAGCAAAGTGTAGAATTGGTTACGGCTAGCATGTATTGGTAATGCCGTAGGT
GGTTGTCTACAATAGTTGGTAAGTCAATAATCTTTTGTCACCAACCAACCCTGACGAGATAGTCT
GAAATGACATATGTGACTAGCGAACTGTCGGGAATATTGTGGATGTTAGCCGAGACATACGGTGT
TTAGAGTGTCATCCAATGACACAACTAGCTCAAGCGTAAACTAGCATGTAATCAGTCAGTACTAC
CAACCACTCAAACGACCCTTCACTTTCACCTTCTCGTCTAATTTAATCAGCTTTTCTTTCCTTTA
GCTAATGTGATTCAGCATCAGTTACCAAATGCCTGTTGAAATTCATGCCTCTTCTACCACCCTTG
CTTGCATCCCTGCCTCCCACCACCCTTGCTTGTTAACATTCATGC
Right flanking sequence: Indices 38845 -- 39344
CACCCTCCACTTACACCAAATTCTACTCCTTCAACACCAGCACTTTGCAAAGAAACCCCCAGTCA
ATCCCTACCCCTTCCACTTTTCCCTCCTCCTCTACCTCTCCCCTACCTCTCTTTTCTCTTCCTCT
CCTCACTATTTTCACTTTCCCCCACCTCTTTTCCCCGGTTGCGAGCCCGCCGCGCCCCTACACAA
CACCGCCCTGCACCACCCCGACCCCATGTTCACCGCGGCGACCCTCGCCCTGTTGACGGCGTGTC
TCGACCGCATCTACTCCAAGAACAACCTCCTTGTGCTTGACCGGGAGCTCTCGCCGCTCATCAAC
CAATTGACCCCCTTCCTGGCCCTCAAGACCCACGGCAAGTTCGACAAGCTCGTGTGGCTCGACGA
GGTGGCTGCCAGCGGCACCCCGCTCGACCAGTTTGCCCTGCTCATCGTGGTGTGTGCGGCGACCC
CGGCCAACGCCGCCGCCGTGGGGCGGCTCCACCGCCACCGGTTGC
Found at i:39619 original size:12 final size:12
Alignment explanation
Indices: 39604--39638 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
39594 CCACCACTGG
39604 CACCACTGGCAC
1 CACCACTGGCAC
39616 CACCACTGGCAC
1 CACCACTGGCAC
39628 CACCACTGGCA
1 CACCACTGGCA
39639 ATACCCCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.49, G:0.17, T:0.09
Consensus pattern (12 bp):
CACCACTGGCAC
Left flanking sequence: Indices 39104 -- 39603
CTCGACCGCATCTACTCCAAGAACAACCTCCTTGTGCTTGACCGGGAGCTCTCGCCGCTCATCAA
CCAATTGACCCCCTTCCTGGCCCTCAAGACCCACGGCAAGTTCGACAAGCTCGTGTGGCTCGACG
AGGTGGCTGCCAGCGGCACCCCGCTCGACCAGTTTGCCCTGCTCATCGTGGTGTGTGCGGCGACC
CCGGCCAACGCCGCCGCCGTGGGGCGGCTCCACCGCCACCGGTTGCACGTGGTGGTGGCGAACTT
GGCGCCGGCGTTTGTGTGGCAGGTGAACCAGGCGGTGCACGGAGGAGTGCGGGAGGAGGACATTA
TTTTGGGGTTGGAGGGGGGAGGTGGAGGTGTGGGCGGTGTGAACGGGAGTGGCGCGAGCGGTGGC
ACCAGCACCAGCACCACCAGCACCAACCAGATCGGACACCACAATAACACCAAAATCAACCCAAA
CAACCCAAACAACGCAAGCAACACAAAAAACACAGCCACCACTGG
Right flanking sequence: Indices 39639 -- 40138
ATACCCCCACCCCCACTCCCGCGTTCATCGCGGTCTCGGCCAAGTGCCGGCTCTGGCAGTGGCGG
GTGTACCCGTGGCAGCCGCAGCACGACGTGTACACCGTGGTGGGCGGCTCGGTGGGCGACTACGT
GCACAACCCGCTCGTGCAGCTCGAGCAGGTGGCGGCGGCGGTGGTGGACGTGGTGTTCCCCCCGT
CGCTGGCGCTCCCCGAGCTCAAGATCAACCACCGCTTCGCCAAGGGCACCCACGCGGCAGCACTT
GTGCGGATGGTGGACGAGGTGCACCTCCCACAGGCACTTGCGCGGCGGCTTGCGCCCGCGGCCAC
CGAGTTCTACACCCACCACCAGGTGGCCGACACCGATTTGGTGGTGCTCGACCGGGCGCTCGACT
GGGTGCCGGCGGTGATGGACCAGGTGACGTACGAGGGGCTTATTGACGACCTGTTTGGGCTCAGC
TACGGGGTGGTGGGCAAGGGAGGACAACCAGGACAGGCAGGACAG
Found at i:41001 original size:12 final size:12
Alignment explanation
Indices: 40984--41016 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
40974 GTGGGGGGAA
40984 TGGGGCTGGCAG
1 TGGGGCTGGCAG
40996 TGGGGCTGGCAG
1 TGGGGCTGGCAG
41008 TGGGGCTGG
1 TGGGGCTGG
41017 AGCGAGTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.15, G:0.61, T:0.18
Consensus pattern (12 bp):
TGGGGCTGGCAG
Left flanking sequence: Indices 40484 -- 40983
CTGGTCAAGCGCCACACCGCGGTGCTGGAGCAGATCTTGGCGGCAATGGACCGCGAGTGGTTGGC
GTTCGAGACCGAGGTGTTCGACGACGAGTACCCGGCGCAGGCGGCGCGGGTGCGCCAGATGTTGG
CGCGGCAGGCCCGCTGGGACCGGGCGGTGGCGGCGGTGGTGTTGGTGCTGGTGGTGAACGACGGG
GTGCGCCGGCGCGACTGGGAGCAGTGGCGGGGCGACGTCGCCGACAACTGGGGCGCCGGCGCCTG
GGGCGTGGTGGAGGCGTTGCGCCGGCACGGGGTGGTGGCGGTGGCGGACGAGGGCGACTTTTTGA
CCACGTTCACCCGGGGGAAAGATAAGCCGCCCGAGGACGTGGACCGGTCCAGCGCCAACTTGGGG
ATCACCGGGGCCGAGCCGGTGGCGGTGCGCAACTACCGGTTGGTGGAGAAGTTCTGGAACTTGCA
CCCGGAGGAGGAGGAGGGTGGGGACAGTGGGGGGAGTGGGGGGAA
Right flanking sequence: Indices 41017 -- 41516
AGCGAGTGGAGGAGGGAACGGAGGAGGAAGTGGAGGGAACGGAGGAGGCAGTGGAGGAAATGGAG
GCAGTGGAGGAGGTAACGGTACTGGTAGTGGTGAAGGTAGTGGTGATGGAAATGCCACTGCTCCC
ACCCCCACCGCCACCACCTTCACCTCCGTCGCCGACGTCTACTCCCAACCCCTGTTCACCCTCCC
CTCCAACACCGTGCCCGTGCTCGTCCGCCTCGTGGAGCTGCTCTACCTGCGGCGGTTCCTCCGCT
ACAAGCCGGTGACCAACGTGCGCCGGCGGCCCAACTGGGAGGGCCTCGGGGTGGCGCTGTTCTGG
AAGGGCCCCGTGGTCGACACCGGGTTGGCGCTCAGCAGCGGTGCCGGCGACGGGCACCCCGTGGA
GCTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAGTTGGCGTGCTTCGAGT
GGTTGCGCCAGCGGTTGGGCCGGCGGATCGTGGTGGTGGCACCGG
Found at i:41051 original size:21 final size:21
Alignment explanation
Indices: 41027--41082 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
41017 AGCGAGTGGA
41027 GGAGGGAACGGAGGAGGAAGT
1 GGAGGGAACGGAGGAGGAAGT
*
41048 GGAGGGAACGGAGGAGGCAGT
1 GGAGGGAACGGAGGAGGAAGT
* *
41069 GGAGGAAATGGAGG
1 GGAGGGAACGGAGG
41083 CAGTGGAGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.32, C:0.05, G:0.57, T:0.05
Consensus pattern (21 bp):
GGAGGGAACGGAGGAGGAAGT
Left flanking sequence: Indices 40527 -- 41026
CAATGGACCGCGAGTGGTTGGCGTTCGAGACCGAGGTGTTCGACGACGAGTACCCGGCGCAGGCG
GCGCGGGTGCGCCAGATGTTGGCGCGGCAGGCCCGCTGGGACCGGGCGGTGGCGGCGGTGGTGTT
GGTGCTGGTGGTGAACGACGGGGTGCGCCGGCGCGACTGGGAGCAGTGGCGGGGCGACGTCGCCG
ACAACTGGGGCGCCGGCGCCTGGGGCGTGGTGGAGGCGTTGCGCCGGCACGGGGTGGTGGCGGTG
GCGGACGAGGGCGACTTTTTGACCACGTTCACCCGGGGGAAAGATAAGCCGCCCGAGGACGTGGA
CCGGTCCAGCGCCAACTTGGGGATCACCGGGGCCGAGCCGGTGGCGGTGCGCAACTACCGGTTGG
TGGAGAAGTTCTGGAACTTGCACCCGGAGGAGGAGGAGGGTGGGGACAGTGGGGGGAGTGGGGGG
AATGGGGCTGGCAGTGGGGCTGGCAGTGGGGCTGGAGCGAGTGGA
Right flanking sequence: Indices 41083 -- 41582
CAGTGGAGGAGGTAACGGTACTGGTAGTGGTGAAGGTAGTGGTGATGGAAATGCCACTGCTCCCA
CCCCCACCGCCACCACCTTCACCTCCGTCGCCGACGTCTACTCCCAACCCCTGTTCACCCTCCCC
TCCAACACCGTGCCCGTGCTCGTCCGCCTCGTGGAGCTGCTCTACCTGCGGCGGTTCCTCCGCTA
CAAGCCGGTGACCAACGTGCGCCGGCGGCCCAACTGGGAGGGCCTCGGGGTGGCGCTGTTCTGGA
AGGGCCCCGTGGTCGACACCGGGTTGGCGCTCAGCAGCGGTGCCGGCGACGGGCACCCCGTGGAG
CTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAGTTGGCGTGCTTCGAGTG
GTTGCGCCAGCGGTTGGGCCGGCGGATCGTGGTGGTGGCACCGGAGATCGTCAACCGCGAGCGGG
TGTTCCGGGCGATGGCGGAGGTGTAGGAGAATGGAGAAGGAATGG
Found at i:41062 original size:18 final size:18
Alignment explanation
Indices: 41039--41092 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
41029 AGGGAACGGA
*
41039 GGAGGAAGTGGAGGGAAC
1 GGAGGAAGTGGAGGAAAC
*
41057 GGAGGAGGCAGTGGAGGAAAT
1 GGAGGA---AGTGGAGGAAAC
*
41078 GGAGGCAGTGGAGGA
1 GGAGGAAGTGGAGGA
41093 GGTAACGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 15 0.50
21 15 0.50
ACGTcount: A:0.31, C:0.06, G:0.56, T:0.07
Consensus pattern (18 bp):
GGAGGAAGTGGAGGAAAC
Left flanking sequence: Indices 40539 -- 41038
AGTGGTTGGCGTTCGAGACCGAGGTGTTCGACGACGAGTACCCGGCGCAGGCGGCGCGGGTGCGC
CAGATGTTGGCGCGGCAGGCCCGCTGGGACCGGGCGGTGGCGGCGGTGGTGTTGGTGCTGGTGGT
GAACGACGGGGTGCGCCGGCGCGACTGGGAGCAGTGGCGGGGCGACGTCGCCGACAACTGGGGCG
CCGGCGCCTGGGGCGTGGTGGAGGCGTTGCGCCGGCACGGGGTGGTGGCGGTGGCGGACGAGGGC
GACTTTTTGACCACGTTCACCCGGGGGAAAGATAAGCCGCCCGAGGACGTGGACCGGTCCAGCGC
CAACTTGGGGATCACCGGGGCCGAGCCGGTGGCGGTGCGCAACTACCGGTTGGTGGAGAAGTTCT
GGAACTTGCACCCGGAGGAGGAGGAGGGTGGGGACAGTGGGGGGAGTGGGGGGAATGGGGCTGGC
AGTGGGGCTGGCAGTGGGGCTGGAGCGAGTGGAGGAGGGAACGGA
Right flanking sequence: Indices 41093 -- 41592
GGTAACGGTACTGGTAGTGGTGAAGGTAGTGGTGATGGAAATGCCACTGCTCCCACCCCCACCGC
CACCACCTTCACCTCCGTCGCCGACGTCTACTCCCAACCCCTGTTCACCCTCCCCTCCAACACCG
TGCCCGTGCTCGTCCGCCTCGTGGAGCTGCTCTACCTGCGGCGGTTCCTCCGCTACAAGCCGGTG
ACCAACGTGCGCCGGCGGCCCAACTGGGAGGGCCTCGGGGTGGCGCTGTTCTGGAAGGGCCCCGT
GGTCGACACCGGGTTGGCGCTCAGCAGCGGTGCCGGCGACGGGCACCCCGTGGAGCTGCCGGTGA
CGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAGTTGGCGTGCTTCGAGTGGTTGCGCCAG
CGGTTGGGCCGGCGGATCGTGGTGGTGGCACCGGAGATCGTCAACCGCGAGCGGGTGTTCCGGGC
GATGGCGGAGGTGTAGGAGAATGGAGAAGGAATGGTTCGAAGGGC
Found at i:41741 original size:24 final size:27
Alignment explanation
Indices: 41685--41743 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 27
41675 GTACCCCTTA
**
41685 CCTTCAGTGTCTTCAGTGCCTTTGATG
1 CCTTCAGTGTCTTCAGTGCCTTCAATG
41712 CCTTCA-TGTCTTCAG-G-CTTCAATG
1 CCTTCAGTGTCTTCAGTGCCTTCAATG
41736 CCTTCAGT
1 CCTTCAGT
41744 TTTTGTTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 12 0.41
25 2 0.07
26 9 0.31
27 6 0.21
ACGTcount: A:0.14, C:0.29, G:0.19, T:0.39
Consensus pattern (27 bp):
CCTTCAGTGTCTTCAGTGCCTTCAATG
Left flanking sequence: Indices 41185 -- 41684
CTACTCCCAACCCCTGTTCACCCTCCCCTCCAACACCGTGCCCGTGCTCGTCCGCCTCGTGGAGC
TGCTCTACCTGCGGCGGTTCCTCCGCTACAAGCCGGTGACCAACGTGCGCCGGCGGCCCAACTGG
GAGGGCCTCGGGGTGGCGCTGTTCTGGAAGGGCCCCGTGGTCGACACCGGGTTGGCGCTCAGCAG
CGGTGCCGGCGACGGGCACCCCGTGGAGCTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGA
CGCGGGCCGAGTTGGCGTGCTTCGAGTGGTTGCGCCAGCGGTTGGGCCGGCGGATCGTGGTGGTG
GCACCGGAGATCGTCAACCGCGAGCGGGTGTTCCGGGCGATGGCGGAGGTGTAGGAGAATGGAGA
AGGAATGGTTCGAAGGGCAGAAGGTAGTGGGTGTCGTCAATGAGTTTAATGGCTTTAATGGATTC
AGTGGCTTCAACGTCTTCAATGTCTTCAGTCTTCAGTACCCCTTA
Right flanking sequence: Indices 41744 -- 42243
TTTTGTTACCTCCTTAATCCTGCCATTCCCATTTTTATACATAGTCTCCTAGTTTATAGCACTAA
TAGAGGATAAACAAGCTACAATTGTGTAGGGCTGTTGGTTCGATAAGACTAGTGAATTTCCTCGT
AGACTCGTACTACAGATGGTCACAGAACTGTCTTACACTGGGTATTCTTCTCAAGCCCGAGTGTT
CTCAACCCGAGTATTTTCGAGTATTTTCTCAAGCCCGTAGACTCAAAAGACAACAGTCTTTCACT
TATGATGGCTTCTTCTGAAGGACAATTACATGTAAAAGTTCCAATTATGGAATCTTCTCATCATT
AGGAACTATTTATGGAAGAGAATTGAGATTAGCAGTTTCTGTGGTATTTGCTTAGGTATTCTTAT
TTGCTATTGGAAGTTTAACTGGGGTAACGATTTCTAATGCTTCTGTTGATGCTTTGTTATTATGT
AGTAGGTCACTTCCACGATATGGGAGCTTTATTCACATTGATTGG
Found at i:41949 original size:15 final size:16
Alignment explanation
Indices: 41921--41950 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
41911 CTGGGTATTC
41921 TTCTCAAGCCCGAGTG
1 TTCTCAAGCCCGAGTG
41937 TTCTCAA-CCCGAGT
1 TTCTCAAGCCCGAGT
41951 ATTTTCGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (16 bp):
TTCTCAAGCCCGAGTG
Left flanking sequence: Indices 41421 -- 41920
TGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAGTTGGCGTGCTTCGAGTGGTTGCGCCAGCGG
TTGGGCCGGCGGATCGTGGTGGTGGCACCGGAGATCGTCAACCGCGAGCGGGTGTTCCGGGCGAT
GGCGGAGGTGTAGGAGAATGGAGAAGGAATGGTTCGAAGGGCAGAAGGTAGTGGGTGTCGTCAAT
GAGTTTAATGGCTTTAATGGATTCAGTGGCTTCAACGTCTTCAATGTCTTCAGTCTTCAGTACCC
CTTACCTTCAGTGTCTTCAGTGCCTTTGATGCCTTCATGTCTTCAGGCTTCAATGCCTTCAGTTT
TTGTTACCTCCTTAATCCTGCCATTCCCATTTTTATACATAGTCTCCTAGTTTATAGCACTAATA
GAGGATAAACAAGCTACAATTGTGTAGGGCTGTTGGTTCGATAAGACTAGTGAATTTCCTCGTAG
ACTCGTACTACAGATGGTCACAGAACTGTCTTACACTGGGTATTC
Right flanking sequence: Indices 41951 -- 42450
ATTTTCGAGTATTTTCTCAAGCCCGTAGACTCAAAAGACAACAGTCTTTCACTTATGATGGCTTC
TTCTGAAGGACAATTACATGTAAAAGTTCCAATTATGGAATCTTCTCATCATTAGGAACTATTTA
TGGAAGAGAATTGAGATTAGCAGTTTCTGTGGTATTTGCTTAGGTATTCTTATTTGCTATTGGAA
GTTTAACTGGGGTAACGATTTCTAATGCTTCTGTTGATGCTTTGTTATTATGTAGTAGGTCACTT
CCACGATATGGGAGCTTTATTCACATTGATTGGTGCTTCCTACGATTGAGGTCCTTCTATGTTCG
GTTTAAACTGTTCCCATTTGAGGAGAAATCCACTTCTGTTAAACATTTCTTCAGCTAGTATTATC
TTCTTAATGCACTTCTTAGGATTAAATGGTTGTCTCGTAAACTCCAATAATACCCTGATACTCTT
TTAGGTTGAAACTTAGTGGCTAAATGAGGTTCAATTATGTCTCTT
Found at i:43114 original size:16 final size:17
Alignment explanation
Indices: 43081--43120 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
43071 CCTTGATAGT
43081 GTTTTCAACGTATATCC
1 GTTTTCAACGTATATCC
*
43098 GTTTTCAACG-GTATCC
1 GTTTTCAACGTATATCC
*
43114 GTCTTCA
1 GTTTTCA
43121 CACCCCATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (17 bp):
GTTTTCAACGTATATCC
Left flanking sequence: Indices 42581 -- 43080
CCACATACCAGTACCAGTGTTCCCCACCCCCTCTTACCAGCGTTCTCCACCCTCTTTTCTTTACT
CTACCCCAGCCAATGGCCGTCGCCCCAAAGCCAACCACCTGATCCGATCAGCCCATGGCATCATA
ACCACGGTAATTGGCCAGCGTCCAATGTAACGTGGCCACGCGCAGGAGGCCCCTGGCGCCAGTAC
ACTCTGACCACCGCGTAAAAACGACTGTCTCTACCCCCAGCCACCTTCCTTTGCTCCCTACGTCC
TCTCCTTCTGCTACTACCTTCTCGTCTTCTGACTCTCTCCAAAGTTCCCCCTCTTTTCGGACGCG
GTCGCGATCGAGCACCGATAACGTGGGCCTCAGCAACACCGAGCACCAAGAGCAGGCTGTTTAGA
ACACTCCACAACGCTCTTGCTCGGTATTGTTCTAACCCTTCACACCCCTCAACCACTCTCACACC
TCTCAAACCTCACAACTTCAATCTCCCTACAATCCCCTTGATAGT
Right flanking sequence: Indices 43121 -- 43620
CACCCCATTCCCGTGCCTCCAGGTGCCTCACCTCCCCTCACCTCCCTCTCTCCTACACAAAACCT
CATAAACTCTTTATTAAATATATCCAATGCAATGGGCTAGCCTTAGATCGAGTCCTCGGCCTCCT
TCTCCGCCGCCTGCTTGGCGTAGAAGGCGTTTCTCTTCTCGACAAGCGGGCGGTGCTCGAACTGC
CAGTAGCCAGTGGCCAAGAGGAACCCCGTGCCAAAAGCAATGGTGATGTCGGTGATGATCTTCTT
CTTCAAAGTGCCAGTAATCGGTGCGATAGCCATGGTGGTGTTAGTGCTGAGAAAAGAATTTTCTG
GTTTTCTATTTGACGCCGCACTGGGTGGGACGATAGCCACGCGGGGCTCGCAACCGGGAACCAGG
CCCGAAACCTGGGGCCACCACGCGGCGGAAACAGTGGGCGGCAGGGGCGGGCGGTTCAATTGCGC
GGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACTGCCCGG
Found at i:44078 original size:7 final size:7
Alignment explanation
Indices: 44068--44107 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
44058 AAGGAGGAGA
44068 GAAGAAG
1 GAAGAAG
44075 GAAGAAG
1 GAAGAAG
44082 GAAGAAG
1 GAAGAAG
* *
44089 GAAGGAC
1 GAAGAAG
44096 GAAGGAAG
1 GAA-GAAG
44104 GAAG
1 GAAG
44108 GAAGACGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 23 0.82
8 5 0.18
ACGTcount: A:0.53, C:0.03, G:0.45, T:0.00
Consensus pattern (7 bp):
GAAGAAG
Left flanking sequence: Indices 43568 -- 44067
AATTGCGCGGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACTGCCCGGTGGCCCGTTTTT
GCCCCCCGGCTTCTCCGCAAACCCCGTGCGGTCGCACCACACATCATACGATGTTGGTGCCCTGC
ACTTAGCACCGCCAATGAGGTGTGCGAACTTTTCAAATTTCGAAACCTCAGTCCACAACCACACA
ATGTTTAAGACCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGTCAGAGCCAA
CAACATCTACGGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCAAGGACAGAA
TGATCCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCCTTCTTGTCT
TCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTATTTATA
TTGATTTTGTAGAGAGGAGAGGGGAGAGGAGGAGAAAGGAGGAGA
Right flanking sequence: Indices 44108 -- 44607
GAAGACGAAACAAGAAACAAAGGAATTGATGAGGGAGAAAGGATCGAGTGAAAGATCTAGTGGGT
TATTGCTGAGGGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATG
GTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGAAGAGGATGGTATAGGACTATGGCTGATGG
CCACGAGACCAATAGGAGCCCCTAGAGGAGTACCAATGGGAGTCGTGTCATTTCACCGTCACCTG
AGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGTGA
GAAAACTACGAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAGAGAGATAGTAGAGATAGAGA
TTAGAGATAGATATCGTGGAGAGAGAATTGATGGAGATAGAAATAGTAGAGGTAGAAATCGTTAG
ATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGT
Found at i:44085 original size:4 final size:4
Alignment explanation
Indices: 44071--44111 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
44061 GAGGAGAGAA
*
44071 GAAG GAA- GAAG GAA- GAAG GAAG G-AC GAAG GAAG GAAG GAAG
1 GAAG GAAG GAAG GAAG GAAG GAAG GAAG GAAG GAAG GAAG GAAG
44112 ACGAAACAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 8 0.25
4 24 0.75
ACGTcount: A:0.51, C:0.02, G:0.46, T:0.00
Consensus pattern (4 bp):
GAAG
Left flanking sequence: Indices 43571 -- 44070
TGCGCGGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACTGCCCGGTGGCCCGTTTTTGCC
CCCCGGCTTCTCCGCAAACCCCGTGCGGTCGCACCACACATCATACGATGTTGGTGCCCTGCACT
TAGCACCGCCAATGAGGTGTGCGAACTTTTCAAATTTCGAAACCTCAGTCCACAACCACACAATG
TTTAAGACCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGTCAGAGCCAACAA
CATCTACGGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCAAGGACAGAATGA
TCCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCCTTCTTGTCTTCG
TACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTATTTATATTG
ATTTTGTAGAGAGGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAA
Right flanking sequence: Indices 44112 -- 44611
ACGAAACAAGAAACAAAGGAATTGATGAGGGAGAAAGGATCGAGTGAAAGATCTAGTGGGTTATT
GCTGAGGGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATGGTTA
AGATCTATGGTGAGAGGATGGAAGAGGATGGAAGAGGATGGTATAGGACTATGGCTGATGGCCAC
GAGACCAATAGGAGCCCCTAGAGGAGTACCAATGGGAGTCGTGTCATTTCACCGTCACCTGAGAC
GAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGTGAGAAA
ACTACGAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAGAGAGATAGTAGAGATAGAGATTAG
AGATAGATATCGTGGAGAGAGAATTGATGGAGATAGAAATAGTAGAGGTAGAAATCGTTAGATAA
GAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAA
Found at i:44085 original size:11 final size:11
Alignment explanation
Indices: 44078--44107 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
44068 GAAGAAGGAA
44078 GAAGGAAGAAG
1 GAAGGAAGAAG
*
44089 GAAGGACGAAG
1 GAAGGAAGAAG
44100 GAAGGAAG
1 GAAGGAAG
44108 GAAGACGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (11 bp):
GAAGGAAGAAG
Left flanking sequence: Indices 43578 -- 44077
TGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACTGCCCGGTGGCCCGTTTTTGCCCCCCGGC
TTCTCCGCAAACCCCGTGCGGTCGCACCACACATCATACGATGTTGGTGCCCTGCACTTAGCACC
GCCAATGAGGTGTGCGAACTTTTCAAATTTCGAAACCTCAGTCCACAACCACACAATGTTTAAGA
CCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGTCAGAGCCAACAACATCTAC
GGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCAAGGACAGAATGATCCCCTT
CCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCCTTCTTGTCTTCGTACTGGC
AGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTATTTATATTGATTTTGT
AGAGAGGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAAGAAGGAA
Right flanking sequence: Indices 44108 -- 44607
GAAGACGAAACAAGAAACAAAGGAATTGATGAGGGAGAAAGGATCGAGTGAAAGATCTAGTGGGT
TATTGCTGAGGGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATG
GTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGAAGAGGATGGTATAGGACTATGGCTGATGG
CCACGAGACCAATAGGAGCCCCTAGAGGAGTACCAATGGGAGTCGTGTCATTTCACCGTCACCTG
AGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGTGA
GAAAACTACGAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAGAGAGATAGTAGAGATAGAGA
TTAGAGATAGATATCGTGGAGAGAGAATTGATGGAGATAGAAATAGTAGAGGTAGAAATCGTTAG
ATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGT
Found at i:44114 original size:18 final size:18
Alignment explanation
Indices: 44062--44116 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
44052 AGGAGAAAGG
*
44062 AGGAGAGAA-GAAGGAAGA
1 AGGA-AGAAGGAAGGACGA
44080 AGGAAGAAGGAAGGACGA
1 AGGAAGAAGGAAGGACGA
44098 AGGAAGGAAGGAA-GACGA
1 AGGAA-GAAGGAAGGACGA
44116 A
1 A
44117 ACAAGAAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.12
18 23 0.68
19 7 0.21
ACGTcount: A:0.53, C:0.04, G:0.44, T:0.00
Consensus pattern (18 bp):
AGGAAGAAGGAAGGACGA
Left flanking sequence: Indices 43562 -- 44061
CGGTTCAATTGCGCGGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACTGCCCGGTGGCCC
GTTTTTGCCCCCCGGCTTCTCCGCAAACCCCGTGCGGTCGCACCACACATCATACGATGTTGGTG
CCCTGCACTTAGCACCGCCAATGAGGTGTGCGAACTTTTCAAATTTCGAAACCTCAGTCCACAAC
CACACAATGTTTAAGACCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGTCAG
AGCCAACAACATCTACGGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCAAGG
ACAGAATGATCCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCCTTC
TTGTCTTCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTA
TTTATATTGATTTTGTAGAGAGGAGAGGGGAGAGGAGGAGAAAGG
Right flanking sequence: Indices 44117 -- 44616
ACAAGAAACAAAGGAATTGATGAGGGAGAAAGGATCGAGTGAAAGATCTAGTGGGTTATTGCTGA
GGGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATGGTTAAGATC
TATGGTGAGAGGATGGAAGAGGATGGAAGAGGATGGTATAGGACTATGGCTGATGGCCACGAGAC
CAATAGGAGCCCCTAGAGGAGTACCAATGGGAGTCGTGTCATTTCACCGTCACCTGAGACGAGTC
GGATCTGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGTGAGAAAACTAC
GAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAGAGAGATAGTAGAGATAGAGATTAGAGATA
GATATCGTGGAGAGAGAATTGATGGAGATAGAAATAGTAGAGGTAGAAATCGTTAGATAAGAATC
GAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAAAGCGG
Found at i:44289 original size:10 final size:10
Alignment explanation
Indices: 44254--44282 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
44244 ATCTATGGTG
44254 AGAGGATGGA
1 AGAGGATGGA
44264 AGAGGATGGA
1 AGAGGATGGA
44274 AGAGGATGG
1 AGAGGATGG
44283 TATAGGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.52, T:0.10
Consensus pattern (10 bp):
AGAGGATGGA
Left flanking sequence: Indices 43754 -- 44253
AACCACACAATGTTTAAGACCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGT
CAGAGCCAACAACATCTACGGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCA
AGGACAGAATGATCCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCC
TTCTTGTCTTCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAG
GTATTTATATTGATTTTGTAGAGAGGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAAGAAGGAAG
AAGGAAGAAGGAAGGACGAAGGAAGGAAGGAAGACGAAACAAGAAACAAAGGAATTGATGAGGGA
GAAAGGATCGAGTGAAAGATCTAGTGGGTTATTGCTGAGGGTTTAAACGGGGTCACTAGACGTCT
TGCTCAATTGGTGAGGTGGGGTAGGTATGGTTAAGATCTATGGTG
Right flanking sequence: Indices 44283 -- 44782
TATAGGACTATGGCTGATGGCCACGAGACCAATAGGAGCCCCTAGAGGAGTACCAATGGGAGTCG
TGTCATTTCACCGTCACCTGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTTAGA
AGTGGGACTGAATTGAGTGAGAAAACTACGAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAG
AGAGATAGTAGAGATAGAGATTAGAGATAGATATCGTGGAGAGAGAATTGATGGAGATAGAAATA
GTAGAGGTAGAAATCGTTAGATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGT
CCAAAGCGGTTGACACAAGTGAAAGACACCTCCAGGCCGCCCATGGGTCGCCACGGAGTCGACGA
CGCGTCGGGAGCACGGCCATACACGCGATTTCAATTTGCAGTAGAGCCTGACAGGAACGTCAATG
GGCTCATTACCCGCGATTCTATGCCTTTGTACTCTGTGGCTTTGC
Found at i:44498 original size:15 final size:15
Alignment explanation
Indices: 44478--44553 Score: 50
Period size: 15 Copynumber: 5.2 Consensus size: 15
44468 GATGGTAAAG
44478 AGAGATAGTAGAGAT
1 AGAGATAGTAGAGAT
44493 AGAGAT--TAGAGAT
1 AGAGATAGTAGAGAT
* * * *
44506 AGATATCGTGGAGAG
1 AGAGATAGTAGAGAT
* *
44521 AGA-ATTGATGGAGAT
1 AGAGATAG-TAGAGAT
* *
44536 AGAAATAGTAGAGGT
1 AGAGATAGTAGAGAT
44551 AGA
1 AGA
44554 AATCGTTAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
13 12 0.24
14 3 0.06
15 31 0.63
16 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.34, T:0.21
Consensus pattern (15 bp):
AGAGATAGTAGAGAT
Left flanking sequence: Indices 43978 -- 44477
GGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTATTTATATTGATTTTGTAGAGAGGAGA
GGGGAGAGGAGGAGAAAGGAGGAGAGAAGAAGGAAGAAGGAAGAAGGAAGGACGAAGGAAGGAAG
GAAGACGAAACAAGAAACAAAGGAATTGATGAGGGAGAAAGGATCGAGTGAAAGATCTAGTGGGT
TATTGCTGAGGGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATG
GTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGAAGAGGATGGTATAGGACTATGGCTGATGG
CCACGAGACCAATAGGAGCCCCTAGAGGAGTACCAATGGGAGTCGTGTCATTTCACCGTCACCTG
AGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGTGA
GAAAACTACGAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAG
Right flanking sequence: Indices 44554 -- 45053
AATCGTTAGATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAAAGCGGTT
GACACAAGTGAAAGACACCTCCAGGCCGCCCATGGGTCGCCACGGAGTCGACGACGCGTCGGGAG
CACGGCCATACACGCGATTTCAATTTGCAGTAGAGCCTGACAGGAACGTCAATGGGCTCATTACC
CGCGATTCTATGCCTTTGTACTCTGTGGCTTTGCCTTACACAACAAGCACGCTTGTGAACATTTA
CCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGTGGCATGCTAAAATTA
GGGCATGCTGGAATTATGACATGCTAGAATTATGACATGCTAGAATGACATGCTAAGATTGGTGG
CACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACCTTCGCAAGCCATTGACA
CACAGAGAGACGATCTAGCAGTAGCGAGGGATGGGAATCTTCAAG
Found at i:44885 original size:16 final size:16
Alignment explanation
Indices: 44866--44924 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
44856 TAATTTGTGG
* * *
44866 CATGCTAAAATTAGGG
1 CATGCTAGAATTATGA
*
44882 CATGCTGGAATTATGA
1 CATGCTAGAATTATGA
44898 CATGCTAGAATTATGA
1 CATGCTAGAATTATGA
44914 CATGCTAGAAT
1 CATGCTAGAAT
44925 GACATGCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (16 bp):
CATGCTAGAATTATGA
Left flanking sequence: Indices 44366 -- 44865
TGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGT
GAGAAAACTACGAGAGATTTCATAGAGCAGAGATAGGGATGGTAAAGAGAGATAGTAGAGATAGA
GATTAGAGATAGATATCGTGGAGAGAGAATTGATGGAGATAGAAATAGTAGAGGTAGAAATCGTT
AGATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAAAGCGGTTGACACAA
GTGAAAGACACCTCCAGGCCGCCCATGGGTCGCCACGGAGTCGACGACGCGTCGGGAGCACGGCC
ATACACGCGATTTCAATTTGCAGTAGAGCCTGACAGGAACGTCAATGGGCTCATTACCCGCGATT
CTATGCCTTTGTACTCTGTGGCTTTGCCTTACACAACAAGCACGCTTGTGAACATTTACCATTGA
CACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGTGG
Right flanking sequence: Indices 44925 -- 45424
GACATGCTAAGATTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGA
CCTTCGCAAGCCATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGGAATCTTCAAGA
CCTTGAGACCTTAAGACCTTAGGACCTTCAAGACCTAAGACCTTCAAGATCTTTGAGACCTTTAC
GACCTAAGACTTTCAAGATCTTGAGTCATAAAAGAATCCCAAGACCTTGAGTCATAAGAGACCCG
TATTGATCCAGTCTCCACATCTGCGCCTCTCTGCCTCTCTGCTGTGCCTCTCGTACTGCTGGAGA
CTGCAAATCCGCTCTTTTAGGTGACGTCGTGAATGTATAAACTATGGCATCCGGTGGGCTGGCAA
ACACCCGAGTTAGGCCTTTTTCTAGACCCTAGCAGTGGCCTTGCGACCACTGAGCTGAAAGCTCG
TGTAATTCTTTAACGAGCCGAGCTGAAGCTCGTAATTCTTCATTT
Found at i:44928 original size:13 final size:15
Alignment explanation
Indices: 44882--44933 Score: 63
Period size: 16 Copynumber: 3.5 Consensus size: 15
44872 AAAATTAGGG
*
44882 CATGCTGGAATTATGA
1 CATGCTAGAA-TATGA
44898 CATGCTAGAATTATGA
1 CATGCTAGAA-TATGA
44914 CATGCTAG-A-ATGA
1 CATGCTAGAATATGA
44927 CATGCTA
1 CATGCTA
44934 AGATTGGTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
13 11 0.31
15 1 0.03
16 23 0.66
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (15 bp):
CATGCTAGAATATGA
Left flanking sequence: Indices 44382 -- 44881
TGTCGAGATACGAGGTATGACGTAGGTTAGAAGTGGGACTGAATTGAGTGAGAAAACTACGAGAG
ATTTCATAGAGCAGAGATAGGGATGGTAAAGAGAGATAGTAGAGATAGAGATTAGAGATAGATAT
CGTGGAGAGAGAATTGATGGAGATAGAAATAGTAGAGGTAGAAATCGTTAGATAAGAATCGAAAA
GATAGAAAACGTACAGACAGAATTCGTTAGTCCAAAGCGGTTGACACAAGTGAAAGACACCTCCA
GGCCGCCCATGGGTCGCCACGGAGTCGACGACGCGTCGGGAGCACGGCCATACACGCGATTTCAA
TTTGCAGTAGAGCCTGACAGGAACGTCAATGGGCTCATTACCCGCGATTCTATGCCTTTGTACTC
TGTGGCTTTGCCTTACACAACAAGCACGCTTGTGAACATTTACCATTGACACGACAACGATTTAT
TGTGGCCCTCGGACCATGCTAATTTGTGGCATGCTAAAATTAGGG
Right flanking sequence: Indices 44934 -- 45433
AGATTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACCTTCGCAA
GCCATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGGAATCTTCAAGACCTTGAGAC
CTTAAGACCTTAGGACCTTCAAGACCTAAGACCTTCAAGATCTTTGAGACCTTTACGACCTAAGA
CTTTCAAGATCTTGAGTCATAAAAGAATCCCAAGACCTTGAGTCATAAGAGACCCGTATTGATCC
AGTCTCCACATCTGCGCCTCTCTGCCTCTCTGCTGTGCCTCTCGTACTGCTGGAGACTGCAAATC
CGCTCTTTTAGGTGACGTCGTGAATGTATAAACTATGGCATCCGGTGGGCTGGCAAACACCCGAG
TTAGGCCTTTTTCTAGACCCTAGCAGTGGCCTTGCGACCACTGAGCTGAAAGCTCGTGTAATTCT
TTAACGAGCCGAGCTGAAGCTCGTAATTCTTCATTTATCCGCCGG
Found at i:45065 original size:8 final size:8
Alignment explanation
Indices: 45051--45103 Score: 63
Period size: 8 Copynumber: 6.5 Consensus size: 8
45041 GGGAATCTTC
45051 AAGACCTT
1 AAGACCTT
*
45059 GAGACCTT
1 AAGACCTT
45067 AAGACCTT
1 AAGACCTT
*
45075 AGGACCTT
1 AAGACCTT
45083 CAAGACC-T
1 -AAGACCTT
45091 AAGACCTT
1 AAGACCTT
45099 CAAGA
1 -AAGA
45104 TCTTTGAGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
7 6 0.16
8 23 0.61
9 9 0.24
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (8 bp):
AAGACCTT
Left flanking sequence: Indices 44551 -- 45050
AGAAATCGTTAGATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAAAGCG
GTTGACACAAGTGAAAGACACCTCCAGGCCGCCCATGGGTCGCCACGGAGTCGACGACGCGTCGG
GAGCACGGCCATACACGCGATTTCAATTTGCAGTAGAGCCTGACAGGAACGTCAATGGGCTCATT
ACCCGCGATTCTATGCCTTTGTACTCTGTGGCTTTGCCTTACACAACAAGCACGCTTGTGAACAT
TTACCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGTGGCATGCTAAAA
TTAGGGCATGCTGGAATTATGACATGCTAGAATTATGACATGCTAGAATGACATGCTAAGATTGG
TGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACCTTCGCAAGCCATTG
ACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGGAATCTTC
Right flanking sequence: Indices 45104 -- 45603
TCTTTGAGACCTTTACGACCTAAGACTTTCAAGATCTTGAGTCATAAAAGAATCCCAAGACCTTG
AGTCATAAGAGACCCGTATTGATCCAGTCTCCACATCTGCGCCTCTCTGCCTCTCTGCTGTGCCT
CTCGTACTGCTGGAGACTGCAAATCCGCTCTTTTAGGTGACGTCGTGAATGTATAAACTATGGCA
TCCGGTGGGCTGGCAAACACCCGAGTTAGGCCTTTTTCTAGACCCTAGCAGTGGCCTTGCGACCA
CTGAGCTGAAAGCTCGTGTAATTCTTTAACGAGCCGAGCTGAAGCTCGTAATTCTTCATTTATCC
GCCGGTTGGCTATTAACAAAACTTATGCCATCACTACCAAACGCCCTACGGACCTACCGGTAGTG
TTCCTGGGTGGCCAGGTCGTCGAACCGCACCCGTTTGCTCGTCGGAGGCGTCAGCTCGTGGCCAC
GCGACCGCTTGAGCGACAGCCGCAACGGCACCGAGCCCCCGTTGG
Found at i:45072 original size:16 final size:17
Alignment explanation
Indices: 45047--45144 Score: 87
Period size: 16 Copynumber: 5.9 Consensus size: 17
45037 GGATGGGAAT
45047 CTTCAAGACCTTGAGAC
1 CTTCAAGACCTTGAGAC
45064 CTT-AAGACCTT-AGGAC
1 CTTCAAGACCTTGA-GAC
*
45080 CTTCAAGACC-TAAGAC
1 CTTCAAGACCTTGAGAC
*
45096 CTTCAAGATCTTTGAGAC
1 CTTCAAGA-CCTTGAGAC
* * *
45114 CTTTACGACC-TAAGAC
1 CTTCAAGACCTTGAGAC
* *
45130 TTTCAAGATCTTGAG
1 CTTCAAGACCTTGAG
45145 TCATAAAAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
15 1 0.02
16 37 0.58
17 15 0.23
18 11 0.17
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (17 bp):
CTTCAAGACCTTGAGAC
Left flanking sequence: Indices 44547 -- 45046
AGGTAGAAATCGTTAGATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAA
AGCGGTTGACACAAGTGAAAGACACCTCCAGGCCGCCCATGGGTCGCCACGGAGTCGACGACGCG
TCGGGAGCACGGCCATACACGCGATTTCAATTTGCAGTAGAGCCTGACAGGAACGTCAATGGGCT
CATTACCCGCGATTCTATGCCTTTGTACTCTGTGGCTTTGCCTTACACAACAAGCACGCTTGTGA
ACATTTACCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGTGGCATGCT
AAAATTAGGGCATGCTGGAATTATGACATGCTAGAATTATGACATGCTAGAATGACATGCTAAGA
TTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACCTTCGCAAGCC
ATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGGAAT
Right flanking sequence: Indices 45145 -- 45644
TCATAAAAGAATCCCAAGACCTTGAGTCATAAGAGACCCGTATTGATCCAGTCTCCACATCTGCG
CCTCTCTGCCTCTCTGCTGTGCCTCTCGTACTGCTGGAGACTGCAAATCCGCTCTTTTAGGTGAC
GTCGTGAATGTATAAACTATGGCATCCGGTGGGCTGGCAAACACCCGAGTTAGGCCTTTTTCTAG
ACCCTAGCAGTGGCCTTGCGACCACTGAGCTGAAAGCTCGTGTAATTCTTTAACGAGCCGAGCTG
AAGCTCGTAATTCTTCATTTATCCGCCGGTTGGCTATTAACAAAACTTATGCCATCACTACCAAA
CGCCCTACGGACCTACCGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACCCGTTTGCTCG
TCGGAGGCGTCAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCACCGAGCCCCCG
TTGGACCCCGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCG
Found at i:45124 original size:34 final size:33
Alignment explanation
Indices: 45047--45141 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 33
45037 GGATGGGAAT
* *
45047 CTTCAAGACCTTGAGACCTT-AAGACCTTAGGAC
1 CTTCAAGACC-TAAGACCTTCAAGATCTTAGGAC
*
45080 CTTCAAGACCTAAGACCTTCAAGATCTTTGAGAC
1 CTTCAAGACCTAAGACCTTCAAGATCTTAG-GAC
* * *
45114 CTTTACGACCTAAGACTTTCAAGATCTT
1 CTTCAAGACCTAAGACCTTCAAGATCTT
45142 GAGTCATAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
32 8 0.15
33 18 0.33
34 28 0.52
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (33 bp):
CTTCAAGACCTAAGACCTTCAAGATCTTAGGAC
Left flanking sequence: Indices 44547 -- 45046
AGGTAGAAATCGTTAGATAAGAATCGAAAAGATAGAAAACGTACAGACAGAATTCGTTAGTCCAA
AGCGGTTGACACAAGTGAAAGACACCTCCAGGCCGCCCATGGGTCGCCACGGAGTCGACGACGCG
TCGGGAGCACGGCCATACACGCGATTTCAATTTGCAGTAGAGCCTGACAGGAACGTCAATGGGCT
CATTACCCGCGATTCTATGCCTTTGTACTCTGTGGCTTTGCCTTACACAACAAGCACGCTTGTGA
ACATTTACCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGTGGCATGCT
AAAATTAGGGCATGCTGGAATTATGACATGCTAGAATTATGACATGCTAGAATGACATGCTAAGA
TTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACCTTCGCAAGCC
ATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGGAAT
Right flanking sequence: Indices 45142 -- 45641
GAGTCATAAAAGAATCCCAAGACCTTGAGTCATAAGAGACCCGTATTGATCCAGTCTCCACATCT
GCGCCTCTCTGCCTCTCTGCTGTGCCTCTCGTACTGCTGGAGACTGCAAATCCGCTCTTTTAGGT
GACGTCGTGAATGTATAAACTATGGCATCCGGTGGGCTGGCAAACACCCGAGTTAGGCCTTTTTC
TAGACCCTAGCAGTGGCCTTGCGACCACTGAGCTGAAAGCTCGTGTAATTCTTTAACGAGCCGAG
CTGAAGCTCGTAATTCTTCATTTATCCGCCGGTTGGCTATTAACAAAACTTATGCCATCACTACC
AAACGCCCTACGGACCTACCGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACCCGTTTGC
TCGTCGGAGGCGTCAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCACCGAGCCC
CCGTTGGACCCCGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGC
Found at i:45979 original size:12 final size:12
Alignment explanation
Indices: 45964--46027 Score: 74
Period size: 12 Copynumber: 5.3 Consensus size: 12
45954 GACTCGGACT
*
45964 GAGAACCAGCCA
1 GAGAACCAGGCA
*
45976 GAGAACCAGGCT
1 GAGAACCAGGCA
*
45988 GAGAACCAGGCT
1 GAGAACCAGGCA
*
46000 GAGAAGCAGGCA
1 GAGAACCAGGCA
* *
46012 AAGAACCAGGCT
1 GAGAACCAGGCA
46024 GAGA
1 GAGA
46028 CTCCTCCTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.39, C:0.23, G:0.33, T:0.05
Consensus pattern (12 bp):
GAGAACCAGGCA
Left flanking sequence: Indices 45464 -- 45963
ACCAAACGCCCTACGGACCTACCGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACCCGTT
TGCTCGTCGGAGGCGTCAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCACCGAG
CCCCCGTTGGACCCCGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCGAACCCGGGCGGAAG
CTCCGGCTCGTAGTCGTCGTCGTCGTCGTCGGCAAACGACCGGAGAAGGTCGCCGGCGATGCCTG
CGCCCAGGGGAAGCTCGCGGGCCACCTCGGGGGCCACCACGGGGGGCGGTGAGCGGATGCGACGG
GCCAGGAGCCGGATCTCGACGTCTTCGTCGGAAGACGAGGACGGCAGCGCGGCCAGCGCGGCCTG
GTAGGCGATGTCGAGTGAGTCTGGAGAAGTGGTGGCGGGTTTGGAGCCTTCGGAACCGGTTTGAG
GAGATGAGTTGGGCTTAGAACCGGGCTCGGACTGAGACTCGGACT
Right flanking sequence: Indices 46028 -- 46527
CTCCTCCTGAGACTCAACCTGAGAACCAGCCTGGTTCCCAGGCTGAGAGCTTGATCCCGTCTCTG
AAGCTGCAGCACCGGTGGCCCCAGGCTCAGAACCTGTTTCCTTCCCTGTTTCCTTCCCCGTTTCC
TTCCCCGTTTCCTTCCCCGTTTCCTTCCCCGTTTCCTTCCCCGTTTCCGTCGCCGCTTCGTCACC
CTGCTGCGGGCTGTTCACGTCGTTCTCGTCGTCGTCCGAGTCAAACAGCGACATCGAGAACCCAA
GCAACCCGGGGCCCGCGGCGATCTCGTCGAGCGTGCCTCCAGTATACCCGGCCACGGGCTCGGGC
GTGGTGGACGCACGGGCAGAGCCCGGCCCGCTGTCGCCGCCCAGGGCCTCCACGCTGGACTCCCG
CTCACCCCGGGCCTCTCCGCCCGTCTGGCCCGCTGGTTCGCTCCCGTCGCCGCCAGCCTTCGCTG
CTCCAGCCGTCGCTCCACCCACGGGCCCGCTCCGGGCCTTTCCGC
Found at i:46060 original size:12 final size:12
Alignment explanation
Indices: 45962--46060 Score: 67
Period size: 12 Copynumber: 8.2 Consensus size: 12
45952 GAGACTCGGA
45962 CTGAGAACCAGC
1 CTGAGAACCAGC
* *
45974 CAGAGAACCAGG
1 CTGAGAACCAGC
*
45986 CTGAGAACCAGG
1 CTGAGAACCAGC
* *
45998 CTGAGAAGCAGG
1 CTGAGAACCAGC
** *
46010 CAAAGAACCAGG
1 CTGAGAACCAGC
**
46022 CTGAG-ACTCCTC
1 CTGAGAAC-CAGC
*
46034 CTGAG-ACTCAAC
1 CTGAGAAC-CAGC
46046 CTGAGAACCAGC
1 CTGAGAACCAGC
46058 CTG
1 CTG
46061 GTTCCCAGGC
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
11 2 0.03
12 66 0.94
13 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.27, T:0.10
Consensus pattern (12 bp):
CTGAGAACCAGC
Left flanking sequence: Indices 45462 -- 45961
CTACCAAACGCCCTACGGACCTACCGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACCCG
TTTGCTCGTCGGAGGCGTCAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCACCG
AGCCCCCGTTGGACCCCGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCGAACCCGGGCGGA
AGCTCCGGCTCGTAGTCGTCGTCGTCGTCGTCGGCAAACGACCGGAGAAGGTCGCCGGCGATGCC
TGCGCCCAGGGGAAGCTCGCGGGCCACCTCGGGGGCCACCACGGGGGGCGGTGAGCGGATGCGAC
GGGCCAGGAGCCGGATCTCGACGTCTTCGTCGGAAGACGAGGACGGCAGCGCGGCCAGCGCGGCC
TGGTAGGCGATGTCGAGTGAGTCTGGAGAAGTGGTGGCGGGTTTGGAGCCTTCGGAACCGGTTTG
AGGAGATGAGTTGGGCTTAGAACCGGGCTCGGACTGAGACTCGGA
Right flanking sequence: Indices 46061 -- 46560
GTTCCCAGGCTGAGAGCTTGATCCCGTCTCTGAAGCTGCAGCACCGGTGGCCCCAGGCTCAGAAC
CTGTTTCCTTCCCTGTTTCCTTCCCCGTTTCCTTCCCCGTTTCCTTCCCCGTTTCCTTCCCCGTT
TCCTTCCCCGTTTCCGTCGCCGCTTCGTCACCCTGCTGCGGGCTGTTCACGTCGTTCTCGTCGTC
GTCCGAGTCAAACAGCGACATCGAGAACCCAAGCAACCCGGGGCCCGCGGCGATCTCGTCGAGCG
TGCCTCCAGTATACCCGGCCACGGGCTCGGGCGTGGTGGACGCACGGGCAGAGCCCGGCCCGCTG
TCGCCGCCCAGGGCCTCCACGCTGGACTCCCGCTCACCCCGGGCCTCTCCGCCCGTCTGGCCCGC
TGGTTCGCTCCCGTCGCCGCCAGCCTTCGCTGCTCCAGCCGTCGCTCCACCCACGGGCCCGCTCC
GGGCCTTTCCGCCCACCATGAGCTCGATCTCCCGCTGGAGCGCCT
Found at i:46142 original size:12 final size:12
Alignment explanation
Indices: 46128--46205 Score: 147
Period size: 12 Copynumber: 6.5 Consensus size: 12
46118 CTCAGAACCT
*
46128 GTTTCCTTCCCT
1 GTTTCCTTCCCC
46140 GTTTCCTTCCCC
1 GTTTCCTTCCCC
46152 GTTTCCTTCCCC
1 GTTTCCTTCCCC
46164 GTTTCCTTCCCC
1 GTTTCCTTCCCC
46176 GTTTCCTTCCCC
1 GTTTCCTTCCCC
46188 GTTTCCTTCCCC
1 GTTTCCTTCCCC
46200 GTTTCC
1 GTTTCC
46206 GTCGCCGCTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.00, C:0.47, G:0.09, T:0.44
Consensus pattern (12 bp):
GTTTCCTTCCCC
Left flanking sequence: Indices 45628 -- 46127
GCAGCGGCGACGGCTCGAACCCGGGCGGAAGCTCCGGCTCGTAGTCGTCGTCGTCGTCGTCGGCA
AACGACCGGAGAAGGTCGCCGGCGATGCCTGCGCCCAGGGGAAGCTCGCGGGCCACCTCGGGGGC
CACCACGGGGGGCGGTGAGCGGATGCGACGGGCCAGGAGCCGGATCTCGACGTCTTCGTCGGAAG
ACGAGGACGGCAGCGCGGCCAGCGCGGCCTGGTAGGCGATGTCGAGTGAGTCTGGAGAAGTGGTG
GCGGGTTTGGAGCCTTCGGAACCGGTTTGAGGAGATGAGTTGGGCTTAGAACCGGGCTCGGACTG
AGACTCGGACTGAGAACCAGCCAGAGAACCAGGCTGAGAACCAGGCTGAGAAGCAGGCAAAGAAC
CAGGCTGAGACTCCTCCTGAGACTCAACCTGAGAACCAGCCTGGTTCCCAGGCTGAGAGCTTGAT
CCCGTCTCTGAAGCTGCAGCACCGGTGGCCCCAGGCTCAGAACCT
Right flanking sequence: Indices 46206 -- 46705
GTCGCCGCTTCGTCACCCTGCTGCGGGCTGTTCACGTCGTTCTCGTCGTCGTCCGAGTCAAACAG
CGACATCGAGAACCCAAGCAACCCGGGGCCCGCGGCGATCTCGTCGAGCGTGCCTCCAGTATACC
CGGCCACGGGCTCGGGCGTGGTGGACGCACGGGCAGAGCCCGGCCCGCTGTCGCCGCCCAGGGCC
TCCACGCTGGACTCCCGCTCACCCCGGGCCTCTCCGCCCGTCTGGCCCGCTGGTTCGCTCCCGTC
GCCGCCAGCCTTCGCTGCTCCAGCCGTCGCTCCACCCACGGGCCCGCTCCGGGCCTTTCCGCCCA
CCATGAGCTCGATCTCCCGCTGGAGCGCCTCTCCGCCCGCCTCAAACGTGTCCACGGGCACCTGG
CCAAACCGGGCCACCGCTTCGTCAAAAGCGGTGGTTTCTGCCACTACAAACATCTCCGCCTTCAC
CTTGGGGTCCACCACCACCCGGTGGGCCGCCACAAACTGGCGCCG
Found at i:47627 original size:22 final size:22
Alignment explanation
Indices: 47576--47617 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
47566 GATGTGGTGT
*
47576 AAGTGTGCTTGAAATGTGCTTC
1 AAGTGTGCTCGAAATGTGCTTC
*
47598 AAGTGTGCTCGAGATGTGCT
1 AAGTGTGCTCGAAATGTGCT
47618 CGAGATGTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.33
Consensus pattern (22 bp):
AAGTGTGCTCGAAATGTGCTTC
Left flanking sequence: Indices 47076 -- 47575
AACAGGTCCACCGTGAGCCGGCCGGGACCCGGTGGAGGCCCGCCCAACAGCTGGCCCTGGATGTT
GGTGGCCTGGATGATGAACGTCTCGATCTTCTGGAGGGTTTCCGGGGCAAACAACGGCTGGCCCG
TGGCGGTGCGCGCGGCCATCCACGTCTTGAACAAGTTGATCATGTTCTGGCGGGTGGCCGTGTCG
GGCACCATCGAGTAGGTCTCGCAGAAGAGCTTGGGGAGGTTTTTGGCAAACAACAGCGTGTAGGG
CGCGCCGATGTTCTTGCAGATCAGGTCCATGAGGTACATCGCGTAGAGCTTGTGTGCTGGGAGGG
CCTTGCGCACCCGCTGGTCGACGGCGTGGACGATGTTCGGGGCAAACAGCACGTTTTCCTCGGCC
AACGCGGTGAGCTCGGAGATGACGGCACGCAGATTGAGGGTGAGCAGCGCAAGCAACTTGTTGAA
GTAGTCTTCGTCGAAGCTCATGGTGGATGGGATGTGATGTGGTGT
Right flanking sequence: Indices 47618 -- 48117
CGAGATGTGCAAAGTGTGTGCAAAGGGTGTGCTGTCCGGTAAGTACTGGATGTACGGTTGGACAG
GTAGGTAGTGCTAGTACTGGGTAGTGCTAGTACTGGGTAGTGCTAGTCTGGTACTAGCTTGGTAC
TAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTTGGTAGTACGACTCGTACTA
ATGCAAAGACACTGGTGAATGTGCCTGGTTCAATGCAACCGCGTCTTCTGGTTGATCACTCGGGA
AGGTCTCGACCGGTGTGTTTCTCGATCAATCGGACGGGGGTTCCTCACGCGGCTGGGGTGTTCTC
CACACTGGTGGTGTCAACCGCCTGCAACCGTTCTTCTGGCTCGTTAGTAGGGCCTCGGGTTAGTG
GTGCCCTTGGCTGGTGTTTCGACGCTTGTGTGGGTCGAGCCGTGAGATTAGTGCGTAGTACGTGT
CACAAAGGAGCCCTGGAACAGTGGTCACACCCAGGTTTATTGTGT
Found at i:47707 original size:16 final size:16
Alignment explanation
Indices: 47686--47733 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
47676 TGGACAGGTA
47686 GGTAGTGCTAGTACTG
1 GGTAGTGCTAGTACTG
47702 GGTAGTGCTAGTACTG
1 GGTAGTGCTAGTACTG
47718 GGTAGTGCTAGT-CTG
1 GGTAGTGCTAGTACTG
47733 G
1 G
47734 TACTAGCTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 4 0.12
16 28 0.88
ACGTcount: A:0.17, C:0.12, G:0.40, T:0.31
Consensus pattern (16 bp):
GGTAGTGCTAGTACTG
Left flanking sequence: Indices 47186 -- 47685
GGCAAACAACGGCTGGCCCGTGGCGGTGCGCGCGGCCATCCACGTCTTGAACAAGTTGATCATGT
TCTGGCGGGTGGCCGTGTCGGGCACCATCGAGTAGGTCTCGCAGAAGAGCTTGGGGAGGTTTTTG
GCAAACAACAGCGTGTAGGGCGCGCCGATGTTCTTGCAGATCAGGTCCATGAGGTACATCGCGTA
GAGCTTGTGTGCTGGGAGGGCCTTGCGCACCCGCTGGTCGACGGCGTGGACGATGTTCGGGGCAA
ACAGCACGTTTTCCTCGGCCAACGCGGTGAGCTCGGAGATGACGGCACGCAGATTGAGGGTGAGC
AGCGCAAGCAACTTGTTGAAGTAGTCTTCGTCGAAGCTCATGGTGGATGGGATGTGATGTGGTGT
AAGTGTGCTTGAAATGTGCTTCAAGTGTGCTCGAGATGTGCTCGAGATGTGCAAAGTGTGTGCAA
AGGGTGTGCTGTCCGGTAAGTACTGGATGTACGGTTGGACAGGTA
Right flanking sequence: Indices 47734 -- 48233
TACTAGCTTGGTACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTTGGTAG
TACGACTCGTACTAATGCAAAGACACTGGTGAATGTGCCTGGTTCAATGCAACCGCGTCTTCTGG
TTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCGATCAATCGGACGGGGGTTCCTCACGCG
GCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCCTGCAACCGTTCTTCTGGCTCGTTAGTAGG
GCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACGCTTGTGTGGGTCGAGCCGTGAGATTAG
TGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGGTCACACCCAGGTTTATTGTGTTTAGAG
ATGGCCGGTGTCAACCCGTTGCTGAGGTGAGCCTGCCCATCCTCGAAATTTGACAGGGTGACACT
GAGCGCGGTCACGTGGGGAGACGGTCACGTGAAAATACACAGGTG
Found at i:47761 original size:10 final size:10
Alignment explanation
Indices: 47735--47795 Score: 113
Period size: 10 Copynumber: 6.0 Consensus size: 10
47725 CTAGTCTGGT
47735 ACTAGCTTGG
1 ACTAGCTTGG
47745 TACTAGCTTGG
1 -ACTAGCTTGG
47756 ACTAGCTTGG
1 ACTAGCTTGG
47766 ACTAGCTTGG
1 ACTAGCTTGG
47776 ACTAGCTTGG
1 ACTAGCTTGG
47786 ACTAGCTTGG
1 ACTAGCTTGG
47796 TAGTACGACT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
10 40 0.80
11 10 0.20
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.31
Consensus pattern (10 bp):
ACTAGCTTGG
Left flanking sequence: Indices 47235 -- 47734
AACAAGTTGATCATGTTCTGGCGGGTGGCCGTGTCGGGCACCATCGAGTAGGTCTCGCAGAAGAG
CTTGGGGAGGTTTTTGGCAAACAACAGCGTGTAGGGCGCGCCGATGTTCTTGCAGATCAGGTCCA
TGAGGTACATCGCGTAGAGCTTGTGTGCTGGGAGGGCCTTGCGCACCCGCTGGTCGACGGCGTGG
ACGATGTTCGGGGCAAACAGCACGTTTTCCTCGGCCAACGCGGTGAGCTCGGAGATGACGGCACG
CAGATTGAGGGTGAGCAGCGCAAGCAACTTGTTGAAGTAGTCTTCGTCGAAGCTCATGGTGGATG
GGATGTGATGTGGTGTAAGTGTGCTTGAAATGTGCTTCAAGTGTGCTCGAGATGTGCTCGAGATG
TGCAAAGTGTGTGCAAAGGGTGTGCTGTCCGGTAAGTACTGGATGTACGGTTGGACAGGTAGGTA
GTGCTAGTACTGGGTAGTGCTAGTACTGGGTAGTGCTAGTCTGGT
Right flanking sequence: Indices 47796 -- 48295
TAGTACGACTCGTACTAATGCAAAGACACTGGTGAATGTGCCTGGTTCAATGCAACCGCGTCTTC
TGGTTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCGATCAATCGGACGGGGGTTCCTCAC
GCGGCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCCTGCAACCGTTCTTCTGGCTCGTTAGT
AGGGCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACGCTTGTGTGGGTCGAGCCGTGAGAT
TAGTGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGGTCACACCCAGGTTTATTGTGTTTA
GAGATGGCCGGTGTCAACCCGTTGCTGAGGTGAGCCTGCCCATCCTCGAAATTTGACAGGGTGAC
ACTGAGCGCGGTCACGTGGGGAGACGGTCACGTGAAAATACACAGGTGGAGGATTCGGTGGGGGA
TCAGGTGAGAAGTCATGTGATGAGTCAGGTGGGAGAGTCAGGTGA
Found at i:48270 original size:12 final size:14
Alignment explanation
Indices: 48251--48309 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 14
48241 CGGTGGGGGA
48251 TCAGGTGA-GA-AG
1 TCAGGTGAGGAGAG
* *
48263 TCATGTGATGAG--
1 TCAGGTGAGGAGAG
48275 TCAGGTG-GGAGAG
1 TCAGGTGAGGAGAG
48288 TCAGGTGAGGAGAG
1 TCAGGTGAGGAGAG
*
48302 TCATGTGA
1 TCAGGTGA
48310 CAACAAGATG
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 3 0.08
12 13 0.34
13 9 0.24
14 13 0.34
ACGTcount: A:0.27, C:0.08, G:0.42, T:0.22
Consensus pattern (14 bp):
TCAGGTGAGGAGAG
Left flanking sequence: Indices 47751 -- 48250
CTTGGACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTTGGTAGTACGACTCGTACTAATG
CAAAGACACTGGTGAATGTGCCTGGTTCAATGCAACCGCGTCTTCTGGTTGATCACTCGGGAAGG
TCTCGACCGGTGTGTTTCTCGATCAATCGGACGGGGGTTCCTCACGCGGCTGGGGTGTTCTCCAC
ACTGGTGGTGTCAACCGCCTGCAACCGTTCTTCTGGCTCGTTAGTAGGGCCTCGGGTTAGTGGTG
CCCTTGGCTGGTGTTTCGACGCTTGTGTGGGTCGAGCCGTGAGATTAGTGCGTAGTACGTGTCAC
AAAGGAGCCCTGGAACAGTGGTCACACCCAGGTTTATTGTGTTTAGAGATGGCCGGTGTCAACCC
GTTGCTGAGGTGAGCCTGCCCATCCTCGAAATTTGACAGGGTGACACTGAGCGCGGTCACGTGGG
GAGACGGTCACGTGAAAATACACAGGTGGAGGATTCGGTGGGGGA
Right flanking sequence: Indices 48310 -- 48809
CAACAAGATGAAGAACGGTGGAGTTTCAAGGTGTTGAATGGTATGGGAATTGACTGGTATGGGTA
TTGTGGAATGAAGCGGGTGTTGAGGTCTAGCCTGCTATTTTTGGATTGACGGGATGGGCAAAAAC
GAGCAGTCCCCGTGGGGACAAACCCCGTGGGGCCGGATCCATCGGGGACGGATTGGGTACGGGAG
ATTCCACTAACTTCTCATCTACGTTAGCGTTTCGGCGCTTTCCAGAACCTGTGGCGCTACCTATT
CATGTAGTTTACTTTTGAGTAGCGTTGACCAATGTATCGCTTAAATGTCACTCAGTTGGCCTCGA
CGCAGGTAATTTAACAAGCTCCCAAAAAACAATTTGCCTAGTGTTTTGTTTCACGTCTCAAGTTG
TCTCCTCAGAGCGAGCAAGTATACGTCCCCCCAACTAGTATCAGCCGAACGAGCCTCGTTAATGC
ATTGGATCCAGATCTTTGAATTTTTCACTTGCAGCTAACCAACTC
Found at i:48301 original size:14 final size:14
Alignment explanation
Indices: 48272--48309 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
48262 GTCATGTGAT
48272 GAGTCAGGTG-GGA
1 GAGTCAGGTGAGGA
48285 GAGTCAGGTGAGGA
1 GAGTCAGGTGAGGA
*
48299 GAGTCATGTGA
1 GAGTCAGGTGA
48310 CAACAAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.26, C:0.08, G:0.47, T:0.18
Consensus pattern (14 bp):
GAGTCAGGTGAGGA
Left flanking sequence: Indices 47772 -- 48271
TTGGACTAGCTTGGACTAGCTTGGTAGTACGACTCGTACTAATGCAAAGACACTGGTGAATGTGC
CTGGTTCAATGCAACCGCGTCTTCTGGTTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCG
ATCAATCGGACGGGGGTTCCTCACGCGGCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCCTG
CAACCGTTCTTCTGGCTCGTTAGTAGGGCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACG
CTTGTGTGGGTCGAGCCGTGAGATTAGTGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGG
TCACACCCAGGTTTATTGTGTTTAGAGATGGCCGGTGTCAACCCGTTGCTGAGGTGAGCCTGCCC
ATCCTCGAAATTTGACAGGGTGACACTGAGCGCGGTCACGTGGGGAGACGGTCACGTGAAAATAC
ACAGGTGGAGGATTCGGTGGGGGATCAGGTGAGAAGTCATGTGAT
Right flanking sequence: Indices 48310 -- 48809
CAACAAGATGAAGAACGGTGGAGTTTCAAGGTGTTGAATGGTATGGGAATTGACTGGTATGGGTA
TTGTGGAATGAAGCGGGTGTTGAGGTCTAGCCTGCTATTTTTGGATTGACGGGATGGGCAAAAAC
GAGCAGTCCCCGTGGGGACAAACCCCGTGGGGCCGGATCCATCGGGGACGGATTGGGTACGGGAG
ATTCCACTAACTTCTCATCTACGTTAGCGTTTCGGCGCTTTCCAGAACCTGTGGCGCTACCTATT
CATGTAGTTTACTTTTGAGTAGCGTTGACCAATGTATCGCTTAAATGTCACTCAGTTGGCCTCGA
CGCAGGTAATTTAACAAGCTCCCAAAAAACAATTTGCCTAGTGTTTTGTTTCACGTCTCAAGTTG
TCTCCTCAGAGCGAGCAAGTATACGTCCCCCCAACTAGTATCAGCCGAACGAGCCTCGTTAATGC
ATTGGATCCAGATCTTTGAATTTTTCACTTGCAGCTAACCAACTC
Found at i:48367 original size:16 final size:16
Alignment explanation
Indices: 48343--48377 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
48333 TTTCAAGGTG
48343 TTGAATGGTATGGGAA
1 TTGAATGGTATGGGAA
* *
48359 TTGACTGGTATGGGTA
1 TTGAATGGTATGGGAA
48375 TTG
1 TTG
48378 TGGAATGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.37, T:0.37
Consensus pattern (16 bp):
TTGAATGGTATGGGAA
Left flanking sequence: Indices 47843 -- 48342
CAATGCAACCGCGTCTTCTGGTTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCGATCAAT
CGGACGGGGGTTCCTCACGCGGCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCCTGCAACCG
TTCTTCTGGCTCGTTAGTAGGGCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACGCTTGTG
TGGGTCGAGCCGTGAGATTAGTGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGGTCACAC
CCAGGTTTATTGTGTTTAGAGATGGCCGGTGTCAACCCGTTGCTGAGGTGAGCCTGCCCATCCTC
GAAATTTGACAGGGTGACACTGAGCGCGGTCACGTGGGGAGACGGTCACGTGAAAATACACAGGT
GGAGGATTCGGTGGGGGATCAGGTGAGAAGTCATGTGATGAGTCAGGTGGGAGAGTCAGGTGAGG
AGAGTCATGTGACAACAAGATGAAGAACGGTGGAGTTTCAAGGTG
Right flanking sequence: Indices 48378 -- 48877
TGGAATGAAGCGGGTGTTGAGGTCTAGCCTGCTATTTTTGGATTGACGGGATGGGCAAAAACGAG
CAGTCCCCGTGGGGACAAACCCCGTGGGGCCGGATCCATCGGGGACGGATTGGGTACGGGAGATT
CCACTAACTTCTCATCTACGTTAGCGTTTCGGCGCTTTCCAGAACCTGTGGCGCTACCTATTCAT
GTAGTTTACTTTTGAGTAGCGTTGACCAATGTATCGCTTAAATGTCACTCAGTTGGCCTCGACGC
AGGTAATTTAACAAGCTCCCAAAAAACAATTTGCCTAGTGTTTTGTTTCACGTCTCAAGTTGTCT
CCTCAGAGCGAGCAAGTATACGTCCCCCCAACTAGTATCAGCCGAACGAGCCTCGTTAATGCATT
GGATCCAGATCTTTGAATTTTTCACTTGCAGCTAACCAACTCTAACACCCGTTAGACTAACACTA
TCCCACATTCCACGTGCATTCGCCCTGTAGGCAAACACTGTTCCT
Found at i:52312 original size:11 final size:11
Alignment explanation
Indices: 52298--52332 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
52288 CCACTATCCC
52298 CCATCACATCT
1 CCATCACATCT
52309 CCATCACATCT
1 CCATCACATCT
*
52320 CTATCACATCT
1 CCATCACATCT
52331 CC
1 CC
52333 TTGTCTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.46, G:0.00, T:0.29
Consensus pattern (11 bp):
CCATCACATCT
Left flanking sequence: Indices 51798 -- 52297
GGGCAATTGGCAGTTCCCCGGTAGAGAATCTACATCTAAGGGGTCAATGGTCGAGCAGCGGGCCT
TCTAGTGCTCGTAAACTTATCTACGAACCAATTGCTTCCAGGGTAGTGCCACGTCTACTGTACCA
CCACGTGCCAATGATATATGCGTTGGCTCTATGAGAGCCCAAGCTCTGGTGTCCAGCCGTTCTAC
ACGCTGTTCCAACCCCGATGCCGACACTCGCTGCTCCGCTTCACCAATTACGCTCCACTTCCACA
CAAACCCATATAAAGCAACCCAAAAGCACTCACCGTCGTACCAGCAATTGGTCCAGCACCAGAAC
CAGCCACAAATAAGCGTTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCCCCAGCTGTCCACCTCG
CTTCTCGTCTTCCCAGCCACCTATGACCCCCACCCAGTGGCTGTGGCTCAACCCTATCATCCTGA
CCTCTGTTGTAACAAAACACACCAGACATTTGCCCCCACTATCCC
Right flanking sequence: Indices 52333 -- 52832
TTGTCTTCTTCCATGTTTTCTACCATGTCATCTACAATGTCTTTGTCCTATTGTCCCCCTTATCT
CAAACCCTACACCCCACCAACCTCGTAGAGCCACGTAAAACCACGTAAACCACCTAACCCCATCA
CACCCGTTCCTTCACCGCCACCACCCCACCATCTCATCGTGTCTCCACCTCTACCCCACACTACG
CGCTAATCGTTCTCCGATTACCTGATTGGGACACCAGCTGACGTCCACCCACCGCCACCAAACCA
CCCCGAAAACGCCCAGACCCACCCAGAAAAACACACCGCTACCCCCCACACACCCACCCAGCCCC
GCCAGACCCGCGCCCGCGGCCCGCAAGCCCCCACGGCGATGACTCACCGTCCGCCTCGTCCCGGT
ACCGGCGCGGCCTTCACCGAAAAAACTTCGAACTTTTCACCACCACCATGTTGAGAAGACAGTTT
TCCACCACGCTGAAGGCGCTCGCCAAGATCAAGGTCGCCAACCCG
Found at i:58812 original size:13 final size:14
Alignment explanation
Indices: 58794--58832 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
58784 ACATTGGCAT
58794 AGCGACCCTTT-GA
1 AGCGACCCTTTCGA
58807 AGCGA-CCTTTCGA
1 AGCGACCCTTTCGA
58820 AGCGA-CCTTTCGA
1 AGCGACCCTTTCGA
58833 GGCTGTCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 5 0.20
13 20 0.80
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (14 bp):
AGCGACCCTTTCGA
Left flanking sequence: Indices 58294 -- 58793
TTGTCTCACAACCTAAATCTTATCGCTCGCCAATAGGCGTCAAAGGACGCGGGAAGCAGGGGAAA
CACGCTCGGGCCGTTGGCGACAACGGGGGTGGTTACACAGCATAAAAAGGGCCACGACGTGAGCC
CGGTCGCGTGGTGGTGGTGGGGCTCGTGCTCGGAGCTGAGCCCCAATGAGGACGTGAGCCACATC
TGCAAGCATTGACATCATCGTCGCTTACTCCGTTGCTTTTTCCGTGTTAGTGTCTCTGTTCGTGC
CTCTATACGACTGCAGCCCGTATACAAATCGAGTAAGTGTTTATGCGCTAGCCCTGCGGAGACCC
GGAGCTACCAACGCCTATTTTTTGGGGGTGGATGCAACTAGGGTAGTGGTTGCTTGGATGTATAA
TAGTTTTCAGGGGATGTGTGGAGTGGTGTATCGAAGAACAATGTTTCAGATGGTTGGGTCCAGCC
GGTCTACACTTGAGACATTTTGAGAAAGATCATGTACATTGGCAT
Right flanking sequence: Indices 58833 -- 59332
GGCTGTCTACTCGCAATCACGGAATTCCGAGCGGAGTCGTGGCAGTTTCGCCGACCAGGGGTTGA
CAGCAAGGTGCACCGAGTAAAATCGGGTAGGCCCGACGGGTGATGGTGCAGGCTGTGCGTTGTGC
GTGGGTCCGCCGTGCGTATACATTTGGAATGCGTTGGTGATCCTAGCCCATTTGGGTAGCAATTT
CCGTGGCACTAGGCGCGATCGGTGGCTACGTGGGTAATTCCGAGCATCGGGCGAGGCGAATGCCG
CCGGGAAAATGTCGAGCCGAGCTGGTGGGCGCAAAGGACGTCAAATTTGACATGGTTTTTGACAT
GGTTCTGAGCAACTGTGGCGGGCTATTGTTCTCAGATATGGTCTTTTTTGGCGATAAGCGTGGAT
TTGCAACCAGTGCTTCGCCTCACAGCTTCGCCTCCTATAAGGTGGAGAATGTAATCTAGACGCGG
CACTTGTAGAGAACCTGGATGGACAGGACTAGAGTTGGTGGTGGT
Found at i:59753 original size:26 final size:26
Alignment explanation
Indices: 59724--59810 Score: 129
Period size: 26 Copynumber: 3.3 Consensus size: 26
59714 GTCTACGGCC
59724 ATCGTTTACGGCCATCGTCTACCACT
1 ATCGTTTACGGCCATCGTCTACCACT
59750 ATCGTTTACGGCCATCGTCTACCACT
1 ATCGTTTACGGCCATCGTCTACCACT
* ** *
59776 ATCGTCTACCACTATCGTCTACCACT
1 ATCGTTTACGGCCATCGTCTACCACT
*
59802 ATCATTTAC
1 ATCGTTTAC
59811 CATTATCGTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.32
Consensus pattern (26 bp):
ATCGTTTACGGCCATCGTCTACCACT
Left flanking sequence: Indices 59224 -- 59723
TGCAACCAGTGCTTCGCCTCACAGCTTCGCCTCCTATAAGGTGGAGAATGTAATCTAGACGCGGC
ACTTGTAGAGAACCTGGATGGACAGGACTAGAGTTGGTGGTGGTAAGCAAGGGGAGCCAGGGTAC
CGAGTGCCCGCTGGTGGTCTGCTGACTAACTAGCTTGGCATTAGTAATCGCTATCTCTGTCCGCA
TAGCTCGGGTCGGTTTAGGTTTAGGAATGTCTCACCCGACCGTCGCTGGTGTATGTCTCACAAGT
ATCTTGTGTTCTCGAGTGGCTCGATCTCGGACCACAGAAGGGTGAAGAGCAACGCTAGTGGAAAC
GGGTGCTTTCGGGGTCTTGCGTCATATAAGAGTTGAACCGTAGCGTGTCGTCTTTGCAACAAGAT
CACCAACTATAGTCGAACTAACAGAGCCCGACACAAATAGCCATTGCATCACAAGAGTACTTCCC
TCGTGTGAACCGCTATCGGGGTGGCTACCACTATCGTCTACGGCC
Right flanking sequence: Indices 59811 -- 60310
CATTATCGTCCACTAGTCTATCGTCTACAACTCTATCGTCTACTACTATAGCATTATATCGCGTC
CTACTATCGCACCCACAGATCTACCTACAAAATACCCACAACAACCCTACCAAACAACCCTACCA
AACAACCCAACCAACCCAACCTCTACACAGCCACTCAACAACCACAACCACAACCACATCACATT
CACAGCCACAACCTTTAAAACACTCTCCCATCCACCACGCTACCCTCCCTCAACACCCGTCTCCA
CTGCCACCTGGCTCCTGCACATACCCACACAAACTTTCCACCTGGACCCCATGGACTTCCTCGAC
TTCAACCTCGGAGACGAGCAGGCAGGCGCCACCAGCGCCGCTCCCATCCAGCCGGCGTTGCTGTT
GCCCCTCGGCAACCTCGAACTGTTGCTGAAAAAGCTCCAATTGGGCCGGTTCATCCCCGATATTC
TGGTGGAGCCCCAGAGCCCGGCGACCCTGGAGCCCCAGCCCGCCG
Found at i:59779 original size:13 final size:13
Alignment explanation
Indices: 59703--59859 Score: 116
Period size: 13 Copynumber: 11.8 Consensus size: 13
59693 ATCGGGGTGG
59703 CTACCACTATCGT
1 CTACCACTATCGT
** *
59716 CTACGGCCATCGT
1 CTACCACTATCGT
* ** *
59729 TTACGGCCATCGT
1 CTACCACTATCGT
59742 CTACCACTATCGT
1 CTACCACTATCGT
* ** *
59755 TTACGGCCATCGT
1 CTACCACTATCGT
59768 CTACCACTATCGT
1 CTACCACTATCGT
59781 CTACCACTATCGT
1 CTACCACTATCGT
*
59794 CTACCACTATCAT
1 CTACCACTATCGT
* *
59807 TTACCATTATCGT
1 CTACCACTATCGT
* *
59820 CCACTAGTCTATCGT
1 CTACCA--CTATCGT
*
59835 CTACAACTCTATCGT
1 CTAC--CACTATCGT
*
59850 CTACTACTAT
1 CTACCACTAT
59860 AGCATTATAT
Statistics
Matches: 111, Mismatches: 29, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
13 91 0.82
15 20 0.18
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.32
Consensus pattern (13 bp):
CTACCACTATCGT
Left flanking sequence: Indices 59203 -- 59702
TTTTGGCGATAAGCGTGGATTTGCAACCAGTGCTTCGCCTCACAGCTTCGCCTCCTATAAGGTGG
AGAATGTAATCTAGACGCGGCACTTGTAGAGAACCTGGATGGACAGGACTAGAGTTGGTGGTGGT
AAGCAAGGGGAGCCAGGGTACCGAGTGCCCGCTGGTGGTCTGCTGACTAACTAGCTTGGCATTAG
TAATCGCTATCTCTGTCCGCATAGCTCGGGTCGGTTTAGGTTTAGGAATGTCTCACCCGACCGTC
GCTGGTGTATGTCTCACAAGTATCTTGTGTTCTCGAGTGGCTCGATCTCGGACCACAGAAGGGTG
AAGAGCAACGCTAGTGGAAACGGGTGCTTTCGGGGTCTTGCGTCATATAAGAGTTGAACCGTAGC
GTGTCGTCTTTGCAACAAGATCACCAACTATAGTCGAACTAACAGAGCCCGACACAAATAGCCAT
TGCATCACAAGAGTACTTCCCTCGTGTGAACCGCTATCGGGGTGG
Right flanking sequence: Indices 59860 -- 60359
AGCATTATATCGCGTCCTACTATCGCACCCACAGATCTACCTACAAAATACCCACAACAACCCTA
CCAAACAACCCTACCAAACAACCCAACCAACCCAACCTCTACACAGCCACTCAACAACCACAACC
ACAACCACATCACATTCACAGCCACAACCTTTAAAACACTCTCCCATCCACCACGCTACCCTCCC
TCAACACCCGTCTCCACTGCCACCTGGCTCCTGCACATACCCACACAAACTTTCCACCTGGACCC
CATGGACTTCCTCGACTTCAACCTCGGAGACGAGCAGGCAGGCGCCACCAGCGCCGCTCCCATCC
AGCCGGCGTTGCTGTTGCCCCTCGGCAACCTCGAACTGTTGCTGAAAAAGCTCCAATTGGGCCGG
TTCATCCCCGATATTCTGGTGGAGCCCCAGAGCCCGGCGACCCTGGAGCCCCAGCCCGCCGACGA
AGTGAGCCAGAAGTACGCGCAGCTCTCGCTCAAGCTGATTGCCTC
Found at i:59812 original size:39 final size:39
Alignment explanation
Indices: 59703--59838 Score: 146
Period size: 39 Copynumber: 3.4 Consensus size: 39
59693 ATCGGGGTGG
** *
59703 CTACCACTATCGTCTACGGCCATCGTTTACGGCCATCGT
1 CTACCACTATCGTCTACGGCCATCGTTTACCACTATCGT
* *
59742 CTACCACTATCGTTTACGGCCATCGTCTACCACTATCGT
1 CTACCACTATCGTCTACGGCCATCGTTTACCACTATCGT
** * * *
59781 CTACCACTATCGTCTACCACTATCATTTACCATTATCGT
1 CTACCACTATCGTCTACGGCCATCGTTTACCACTATCGT
* *
59820 CCACTAGTCTATCGTCTAC
1 CTACCA--CTATCGTCTAC
59839 AACTCTATCG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 70 0.86
41 11 0.14
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.32
Consensus pattern (39 bp):
CTACCACTATCGTCTACGGCCATCGTTTACCACTATCGT
Left flanking sequence: Indices 59203 -- 59702
TTTTGGCGATAAGCGTGGATTTGCAACCAGTGCTTCGCCTCACAGCTTCGCCTCCTATAAGGTGG
AGAATGTAATCTAGACGCGGCACTTGTAGAGAACCTGGATGGACAGGACTAGAGTTGGTGGTGGT
AAGCAAGGGGAGCCAGGGTACCGAGTGCCCGCTGGTGGTCTGCTGACTAACTAGCTTGGCATTAG
TAATCGCTATCTCTGTCCGCATAGCTCGGGTCGGTTTAGGTTTAGGAATGTCTCACCCGACCGTC
GCTGGTGTATGTCTCACAAGTATCTTGTGTTCTCGAGTGGCTCGATCTCGGACCACAGAAGGGTG
AAGAGCAACGCTAGTGGAAACGGGTGCTTTCGGGGTCTTGCGTCATATAAGAGTTGAACCGTAGC
GTGTCGTCTTTGCAACAAGATCACCAACTATAGTCGAACTAACAGAGCCCGACACAAATAGCCAT
TGCATCACAAGAGTACTTCCCTCGTGTGAACCGCTATCGGGGTGG
Right flanking sequence: Indices 59839 -- 60338
AACTCTATCGTCTACTACTATAGCATTATATCGCGTCCTACTATCGCACCCACAGATCTACCTAC
AAAATACCCACAACAACCCTACCAAACAACCCTACCAAACAACCCAACCAACCCAACCTCTACAC
AGCCACTCAACAACCACAACCACAACCACATCACATTCACAGCCACAACCTTTAAAACACTCTCC
CATCCACCACGCTACCCTCCCTCAACACCCGTCTCCACTGCCACCTGGCTCCTGCACATACCCAC
ACAAACTTTCCACCTGGACCCCATGGACTTCCTCGACTTCAACCTCGGAGACGAGCAGGCAGGCG
CCACCAGCGCCGCTCCCATCCAGCCGGCGTTGCTGTTGCCCCTCGGCAACCTCGAACTGTTGCTG
AAAAAGCTCCAATTGGGCCGGTTCATCCCCGATATTCTGGTGGAGCCCCAGAGCCCGGCGACCCT
GGAGCCCCAGCCCGCCGACGAAGTGAGCCAGAAGTACGCGCAGCT
Found at i:59834 original size:15 final size:15
Alignment explanation
Indices: 59814--59857 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
59804 CATTTACCAT
* *
59814 TATCGTCCACTAGTC
1 TATCGTCTACTACTC
*
59829 TATCGTCTACAACTC
1 TATCGTCTACTACTC
59844 TATCGTCTACTACT
1 TATCGTCTACTACT
59858 ATAGCATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (15 bp):
TATCGTCTACTACTC
Left flanking sequence: Indices 59314 -- 59813
GACTAGAGTTGGTGGTGGTAAGCAAGGGGAGCCAGGGTACCGAGTGCCCGCTGGTGGTCTGCTGA
CTAACTAGCTTGGCATTAGTAATCGCTATCTCTGTCCGCATAGCTCGGGTCGGTTTAGGTTTAGG
AATGTCTCACCCGACCGTCGCTGGTGTATGTCTCACAAGTATCTTGTGTTCTCGAGTGGCTCGAT
CTCGGACCACAGAAGGGTGAAGAGCAACGCTAGTGGAAACGGGTGCTTTCGGGGTCTTGCGTCAT
ATAAGAGTTGAACCGTAGCGTGTCGTCTTTGCAACAAGATCACCAACTATAGTCGAACTAACAGA
GCCCGACACAAATAGCCATTGCATCACAAGAGTACTTCCCTCGTGTGAACCGCTATCGGGGTGGC
TACCACTATCGTCTACGGCCATCGTTTACGGCCATCGTCTACCACTATCGTTTACGGCCATCGTC
TACCACTATCGTCTACCACTATCGTCTACCACTATCATTTACCAT
Right flanking sequence: Indices 59858 -- 60357
ATAGCATTATATCGCGTCCTACTATCGCACCCACAGATCTACCTACAAAATACCCACAACAACCC
TACCAAACAACCCTACCAAACAACCCAACCAACCCAACCTCTACACAGCCACTCAACAACCACAA
CCACAACCACATCACATTCACAGCCACAACCTTTAAAACACTCTCCCATCCACCACGCTACCCTC
CCTCAACACCCGTCTCCACTGCCACCTGGCTCCTGCACATACCCACACAAACTTTCCACCTGGAC
CCCATGGACTTCCTCGACTTCAACCTCGGAGACGAGCAGGCAGGCGCCACCAGCGCCGCTCCCAT
CCAGCCGGCGTTGCTGTTGCCCCTCGGCAACCTCGAACTGTTGCTGAAAAAGCTCCAATTGGGCC
GGTTCATCCCCGATATTCTGGTGGAGCCCCAGAGCCCGGCGACCCTGGAGCCCCAGCCCGCCGAC
GAAGTGAGCCAGAAGTACGCGCAGCTCTCGCTCAAGCTGATTGCC
Found at i:59933 original size:13 final size:13
Alignment explanation
Indices: 59915--59954 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
59905 AAATACCCAC
59915 AACAACCCTACCA
1 AACAACCCTACCA
59928 AACAACCCTACCA
1 AACAACCCTACCA
*
59941 AACAACCCAACCA
1 AACAACCCTACCA
59954 A
1 A
59955 CCCAACCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.50, C:0.45, G:0.00, T:0.05
Consensus pattern (13 bp):
AACAACCCTACCA
Left flanking sequence: Indices 59415 -- 59914
CGCATAGCTCGGGTCGGTTTAGGTTTAGGAATGTCTCACCCGACCGTCGCTGGTGTATGTCTCAC
AAGTATCTTGTGTTCTCGAGTGGCTCGATCTCGGACCACAGAAGGGTGAAGAGCAACGCTAGTGG
AAACGGGTGCTTTCGGGGTCTTGCGTCATATAAGAGTTGAACCGTAGCGTGTCGTCTTTGCAACA
AGATCACCAACTATAGTCGAACTAACAGAGCCCGACACAAATAGCCATTGCATCACAAGAGTACT
TCCCTCGTGTGAACCGCTATCGGGGTGGCTACCACTATCGTCTACGGCCATCGTTTACGGCCATC
GTCTACCACTATCGTTTACGGCCATCGTCTACCACTATCGTCTACCACTATCGTCTACCACTATC
ATTTACCATTATCGTCCACTAGTCTATCGTCTACAACTCTATCGTCTACTACTATAGCATTATAT
CGCGTCCTACTATCGCACCCACAGATCTACCTACAAAATACCCAC
Right flanking sequence: Indices 59955 -- 60454
CCCAACCTCTACACAGCCACTCAACAACCACAACCACAACCACATCACATTCACAGCCACAACCT
TTAAAACACTCTCCCATCCACCACGCTACCCTCCCTCAACACCCGTCTCCACTGCCACCTGGCTC
CTGCACATACCCACACAAACTTTCCACCTGGACCCCATGGACTTCCTCGACTTCAACCTCGGAGA
CGAGCAGGCAGGCGCCACCAGCGCCGCTCCCATCCAGCCGGCGTTGCTGTTGCCCCTCGGCAACC
TCGAACTGTTGCTGAAAAAGCTCCAATTGGGCCGGTTCATCCCCGATATTCTGGTGGAGCCCCAG
AGCCCGGCGACCCTGGAGCCCCAGCCCGCCGACGAAGTGAGCCAGAAGTACGCGCAGCTCTCGCT
CAAGCTGATTGCCTCCGCTGCTGCCCAGAAACCCGACGACAATCCCGCCAAACCGGCGCAGACCG
CCAACAAGACCACCTTGACCACCCGGCTCTCGCGGGTTTTGACCC
Found at i:60312 original size:22 final size:23
Alignment explanation
Indices: 60269--60312 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
60259 GATATTCTGG
*
60269 TGGAGCCCCAGAGCCCGGCGACCC
1 TGGAGCCCCA-AGCCCGCCGACCC
60293 TGGAGCCCC-AGCCCGCCGAC
1 TGGAGCCCCAAGCCCGCCGAC
60313 GAAGTGAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
24 9 0.47
ACGTcount: A:0.16, C:0.48, G:0.32, T:0.05
Consensus pattern (23 bp):
TGGAGCCCCAAGCCCGCCGACCC
Left flanking sequence: Indices 59769 -- 60268
TACCACTATCGTCTACCACTATCGTCTACCACTATCATTTACCATTATCGTCCACTAGTCTATCG
TCTACAACTCTATCGTCTACTACTATAGCATTATATCGCGTCCTACTATCGCACCCACAGATCTA
CCTACAAAATACCCACAACAACCCTACCAAACAACCCTACCAAACAACCCAACCAACCCAACCTC
TACACAGCCACTCAACAACCACAACCACAACCACATCACATTCACAGCCACAACCTTTAAAACAC
TCTCCCATCCACCACGCTACCCTCCCTCAACACCCGTCTCCACTGCCACCTGGCTCCTGCACATA
CCCACACAAACTTTCCACCTGGACCCCATGGACTTCCTCGACTTCAACCTCGGAGACGAGCAGGC
AGGCGCCACCAGCGCCGCTCCCATCCAGCCGGCGTTGCTGTTGCCCCTCGGCAACCTCGAACTGT
TGCTGAAAAAGCTCCAATTGGGCCGGTTCATCCCCGATATTCTGG
Right flanking sequence: Indices 60313 -- 60812
GAAGTGAGCCAGAAGTACGCGCAGCTCTCGCTCAAGCTGATTGCCTCCGCTGCTGCCCAGAAACC
CGACGACAATCCCGCCAAACCGGCGCAGACCGCCAACAAGACCACCTTGACCACCCGGCTCTCGC
GGGTTTTGACCCCGCTGGTGCCCGATCTGGTCATCCGCGACGTGTTTGCCCAGCTACCCCCCGAT
ATGGTGCAGAACCTGACCAGAATCCGCGGGCTGATGGCCCGGAGACGGTTCCGGGGCAAAATCGA
GACTGACGTCATCCGGGCCCAGGCAGCGGTGCTACGCGAGTACGCCCCGGTGGTGGCCCAGCTCC
AGCGGCTCGGCAACCGCCTCGACGAGCTCAACGAGGTGCACCAGGCCACCAAAACCACGTTGGCA
AGGCATGGTAGCGACCAGTCGCTGGAGTTCACCGCGGACATCCAGCGGCTCAGCCACGAGAAAAA
GATGGTGGCGACCAAACGCGATCTCTTGGCCAACTTCCGCAAGCT
Found at i:74517 original size:12 final size:12
Alignment explanation
Indices: 74500--74548 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
74490 GAATCCTAGA
74500 GTCAAACGCCAG
1 GTCAAACGCCAG
* *
74512 GTCAAACACCTG
1 GTCAAACGCCAG
74524 GTCAAACGCCAG
1 GTCAAACGCCAG
* *
74536 ATTAAAC-CCAG
1 GTCAAACGCCAG
74547 GT
1 GT
74549 TCAATCATAG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 5 0.17
12 25 0.83
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.14
Consensus pattern (12 bp):
GTCAAACGCCAG
Left flanking sequence: Indices 74000 -- 74499
GTTGATGTGGAGTTTAAGTTTGGACAAGAGATACCCCACGATTAGTCGCGGGGTGGTAAAAGAAA
TGTGTTGGAAGGTTGGGTGGACTGCAGGGTGTCCCTGTCTGGGTCTACCAGAATGTATTGATAGA
TTACTGAGGAATTCGCAGGTTGTAAGCATTGAATTAAAAAATGATTAAGAGAAAGTGGTGTTGCA
ATTGAGGGCGGGGAACCGATAAATCGCTATGGTGTTGTCGGGTTCTTGTGCAATTCCTCTGATTT
TATCCAGCTCTTAGAGTACCCTAAATGGCAGTCACTCGATCAATCGTGGAAACGTCTCTGCCTCG
TTTAGAGGCAACTACCGGAGGCTTTCCGACCCTAGCATCCAACTCCAATGGCTATCAGACTAGCA
TCCAGCTCCAGTCAAACGCACAGGTTCTATTATAGCCTTTGACCTTTATCTCCCTTCGCATGGCT
TCCATCATGAATCCAAGCCCATGGCTACGGTTCCAGAATCCTAGA
Right flanking sequence: Indices 74549 -- 75048
TCAATCATAGCTCCTTGCCTTAAACCCGTAATATCTTCAACGGGAGTCCAGACCCAAGGCTACCG
TCTTTCCATCTTTCCAAACTCATGCCTTTCTCTCCACCCATGCCTTTCTCCCCACCCATCCCTTT
CTCTACTCTCTTCCATAACGGTATAGTACATTGACGTATATAACGGGGAGGAGTCAAGTGTCCTG
CATCATTTCTTCGTTCCCCCACGAAAAGCCCATGCCCTCGCCAAGACCCGGGTCCGGGCCACCCT
CCATGAACTGGTTAAAAAAGTCGATCTCCTCGATCCCCCCGGCACCGCCGTTGGAAAACATGGTA
TCGGTGCCGACGATCTCCACCGAAAACTGGTCGGGCTCCGCCGCCTCCTCCACTATCAGCTCCTC
CTTCTTGGCGGGCTTCTTCTTGGGCAGCTCGGGCACCAGGTTCTTGCGACGCCGCTTGTCGGCAG
GCGCGTCCAGCGCCGGGGTAAGCGGGAAGTCCTTTTTGAGCGCCA
Found at i:74552 original size:24 final size:24
Alignment explanation
Indices: 74500--74548 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
74490 GAATCCTAGA
* *
74500 GTCAAACGCCAGGTCAAACACCTG
1 GTCAAACGCCAGATCAAACACCAG
*
74524 GTCAAACGCCAGATTAAAC-CCAG
1 GTCAAACGCCAGATCAAACACCAG
74547 GT
1 GT
74549 TCAATCATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.14
Consensus pattern (24 bp):
GTCAAACGCCAGATCAAACACCAG
Left flanking sequence: Indices 74000 -- 74499
GTTGATGTGGAGTTTAAGTTTGGACAAGAGATACCCCACGATTAGTCGCGGGGTGGTAAAAGAAA
TGTGTTGGAAGGTTGGGTGGACTGCAGGGTGTCCCTGTCTGGGTCTACCAGAATGTATTGATAGA
TTACTGAGGAATTCGCAGGTTGTAAGCATTGAATTAAAAAATGATTAAGAGAAAGTGGTGTTGCA
ATTGAGGGCGGGGAACCGATAAATCGCTATGGTGTTGTCGGGTTCTTGTGCAATTCCTCTGATTT
TATCCAGCTCTTAGAGTACCCTAAATGGCAGTCACTCGATCAATCGTGGAAACGTCTCTGCCTCG
TTTAGAGGCAACTACCGGAGGCTTTCCGACCCTAGCATCCAACTCCAATGGCTATCAGACTAGCA
TCCAGCTCCAGTCAAACGCACAGGTTCTATTATAGCCTTTGACCTTTATCTCCCTTCGCATGGCT
TCCATCATGAATCCAAGCCCATGGCTACGGTTCCAGAATCCTAGA
Right flanking sequence: Indices 74549 -- 75048
TCAATCATAGCTCCTTGCCTTAAACCCGTAATATCTTCAACGGGAGTCCAGACCCAAGGCTACCG
TCTTTCCATCTTTCCAAACTCATGCCTTTCTCTCCACCCATGCCTTTCTCCCCACCCATCCCTTT
CTCTACTCTCTTCCATAACGGTATAGTACATTGACGTATATAACGGGGAGGAGTCAAGTGTCCTG
CATCATTTCTTCGTTCCCCCACGAAAAGCCCATGCCCTCGCCAAGACCCGGGTCCGGGCCACCCT
CCATGAACTGGTTAAAAAAGTCGATCTCCTCGATCCCCCCGGCACCGCCGTTGGAAAACATGGTA
TCGGTGCCGACGATCTCCACCGAAAACTGGTCGGGCTCCGCCGCCTCCTCCACTATCAGCTCCTC
CTTCTTGGCGGGCTTCTTCTTGGGCAGCTCGGGCACCAGGTTCTTGCGACGCCGCTTGTCGGCAG
GCGCGTCCAGCGCCGGGGTAAGCGGGAAGTCCTTTTTGAGCGCCA
Found at i:74657 original size:18 final size:18
Alignment explanation
Indices: 74634--74682 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
74624 TTTCCAAACT
74634 CATGCCTTTCTCTCCACC
1 CATGCCTTTCTCTCCACC
*
74652 CATGCCTTTCTCCCCACC
1 CATGCCTTTCTCTCCACC
*
74670 CATCCCTTTCTCT
1 CATGCCTTTCTCT
74683 ACTCTCTTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.10, C:0.51, G:0.04, T:0.35
Consensus pattern (18 bp):
CATGCCTTTCTCTCCACC
Left flanking sequence: Indices 74134 -- 74633
TGAGGAATTCGCAGGTTGTAAGCATTGAATTAAAAAATGATTAAGAGAAAGTGGTGTTGCAATTG
AGGGCGGGGAACCGATAAATCGCTATGGTGTTGTCGGGTTCTTGTGCAATTCCTCTGATTTTATC
CAGCTCTTAGAGTACCCTAAATGGCAGTCACTCGATCAATCGTGGAAACGTCTCTGCCTCGTTTA
GAGGCAACTACCGGAGGCTTTCCGACCCTAGCATCCAACTCCAATGGCTATCAGACTAGCATCCA
GCTCCAGTCAAACGCACAGGTTCTATTATAGCCTTTGACCTTTATCTCCCTTCGCATGGCTTCCA
TCATGAATCCAAGCCCATGGCTACGGTTCCAGAATCCTAGAGTCAAACGCCAGGTCAAACACCTG
GTCAAACGCCAGATTAAACCCAGGTTCAATCATAGCTCCTTGCCTTAAACCCGTAATATCTTCAA
CGGGAGTCCAGACCCAAGGCTACCGTCTTTCCATCTTTCCAAACT
Right flanking sequence: Indices 74683 -- 75182
ACTCTCTTCCATAACGGTATAGTACATTGACGTATATAACGGGGAGGAGTCAAGTGTCCTGCATC
ATTTCTTCGTTCCCCCACGAAAAGCCCATGCCCTCGCCAAGACCCGGGTCCGGGCCACCCTCCAT
GAACTGGTTAAAAAAGTCGATCTCCTCGATCCCCCCGGCACCGCCGTTGGAAAACATGGTATCGG
TGCCGACGATCTCCACCGAAAACTGGTCGGGCTCCGCCGCCTCCTCCACTATCAGCTCCTCCTTC
TTGGCGGGCTTCTTCTTGGGCAGCTCGGGCACCAGGTTCTTGCGACGCCGCTTGTCGGCAGGCGC
GTCCAGCGCCGGGGTAAGCGGGAAGTCCTTTTTGAGCGCCAGCCCGGTGCCGCTGGCCTTGCGCC
CGCGCTTTGCCGGCTCCTTCTTCTTTTTGAGCCCGGGCAGCGTCTTGGGCAGCGCCAGCGCCGGC
AGCTTCTGCGGGACGGGCATGGGCATCGGTTTGAGGCCGTTGGGC
Found at i:75275 original size:12 final size:12
Alignment explanation
Indices: 75258--75290 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
75248 GGGGCCCGGT
75258 GGTCCCTGGCTG
1 GGTCCCTGGCTG
*
75270 GGTCCCTGGTTG
1 GGTCCCTGGCTG
75282 GGTCCCTGG
1 GGTCCCTGG
75291 GGTCCCTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.42, T:0.27
Consensus pattern (12 bp):
GGTCCCTGGCTG
Left flanking sequence: Indices 74758 -- 75257
TCCCCCACGAAAAGCCCATGCCCTCGCCAAGACCCGGGTCCGGGCCACCCTCCATGAACTGGTTA
AAAAAGTCGATCTCCTCGATCCCCCCGGCACCGCCGTTGGAAAACATGGTATCGGTGCCGACGAT
CTCCACCGAAAACTGGTCGGGCTCCGCCGCCTCCTCCACTATCAGCTCCTCCTTCTTGGCGGGCT
TCTTCTTGGGCAGCTCGGGCACCAGGTTCTTGCGACGCCGCTTGTCGGCAGGCGCGTCCAGCGCC
GGGGTAAGCGGGAAGTCCTTTTTGAGCGCCAGCCCGGTGCCGCTGGCCTTGCGCCCGCGCTTTGC
CGGCTCCTTCTTCTTTTTGAGCCCGGGCAGCGTCTTGGGCAGCGCCAGCGCCGGCAGCTTCTGCG
GGACGGGCATGGGCATCGGTTTGAGGCCGTTGGGCGGTTGCGAGGGGCCGTTCTGGCCCATGAGG
TGTGGCGGCACCGCGGGCAGCTGCGGGTTGCCGTGGGGGCCCGGT
Right flanking sequence: Indices 75291 -- 75790
GGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGG
TCCTTGCGGCCCTTGGTTTGGTCCTTGTGGGCCCTGGTTTGGTCCTTGAGGACCCTGGTTCGGGC
CCTGCGGGCCCATGTTCGGGCCCATGTTCATCTGGCCCATCCCCTGGCCCATCATCTGGCCCTGG
CCCTGGCCCATCGCCATCTGCATCCCCTGCTCGGGCATCATCAGGAACATCAGCTCCGACAGCCC
GTTGTTGCGGGCAATGTCCAACCGCTTCTTGTTCTGTTTCTCCAACAACATCAACTGCTCCTGGT
AGTCCTGGAGCGCCAGCATGTTGCGGGTCAAGCTGGGGTTCTCCTTGGTGGCGCTGACCGCAGGC
AGCCCCTTGAGCGGGTACTGCTGCGCCTGGGCCATCTGCGGCGGCACCGGGCCCAGCCCAGGCGG
GATCTGGCCCTGGTATGGGTACGGCGGGCCCATCCGCGTGGCGGG
Found at i:75295 original size:9 final size:9
Alignment explanation
Indices: 75281--75358 Score: 156
Period size: 9 Copynumber: 8.7 Consensus size: 9
75271 GTCCCTGGTT
75281 GGGTCCCTG
1 GGGTCCCTG
75290 GGGTCCCTG
1 GGGTCCCTG
75299 GGGTCCCTG
1 GGGTCCCTG
75308 GGGTCCCTG
1 GGGTCCCTG
75317 GGGTCCCTG
1 GGGTCCCTG
75326 GGGTCCCTG
1 GGGTCCCTG
75335 GGGTCCCTG
1 GGGTCCCTG
75344 GGGTCCCTG
1 GGGTCCCTG
75353 GGGTCC
1 GGGTCC
75359 TTGCGGCCCT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 69 1.00
ACGTcount: A:0.00, C:0.33, G:0.45, T:0.22
Consensus pattern (9 bp):
GGGTCCCTG
Left flanking sequence: Indices 74781 -- 75280
TCGCCAAGACCCGGGTCCGGGCCACCCTCCATGAACTGGTTAAAAAAGTCGATCTCCTCGATCCC
CCCGGCACCGCCGTTGGAAAACATGGTATCGGTGCCGACGATCTCCACCGAAAACTGGTCGGGCT
CCGCCGCCTCCTCCACTATCAGCTCCTCCTTCTTGGCGGGCTTCTTCTTGGGCAGCTCGGGCACC
AGGTTCTTGCGACGCCGCTTGTCGGCAGGCGCGTCCAGCGCCGGGGTAAGCGGGAAGTCCTTTTT
GAGCGCCAGCCCGGTGCCGCTGGCCTTGCGCCCGCGCTTTGCCGGCTCCTTCTTCTTTTTGAGCC
CGGGCAGCGTCTTGGGCAGCGCCAGCGCCGGCAGCTTCTGCGGGACGGGCATGGGCATCGGTTTG
AGGCCGTTGGGCGGTTGCGAGGGGCCGTTCTGGCCCATGAGGTGTGGCGGCACCGCGGGCAGCTG
CGGGTTGCCGTGGGGGCCCGGTGGTCCCTGGCTGGGTCCCTGGTT
Right flanking sequence: Indices 75359 -- 75858
TTGCGGCCCTTGGTTTGGTCCTTGTGGGCCCTGGTTTGGTCCTTGAGGACCCTGGTTCGGGCCCT
GCGGGCCCATGTTCGGGCCCATGTTCATCTGGCCCATCCCCTGGCCCATCATCTGGCCCTGGCCC
TGGCCCATCGCCATCTGCATCCCCTGCTCGGGCATCATCAGGAACATCAGCTCCGACAGCCCGTT
GTTGCGGGCAATGTCCAACCGCTTCTTGTTCTGTTTCTCCAACAACATCAACTGCTCCTGGTAGT
CCTGGAGCGCCAGCATGTTGCGGGTCAAGCTGGGGTTCTCCTTGGTGGCGCTGACCGCAGGCAGC
CCCTTGAGCGGGTACTGCTGCGCCTGGGCCATCTGCGGCGGCACCGGGCCCAGCCCAGGCGGGAT
CTGGCCCTGGTATGGGTACGGCGGGCCCATCCGCGTGGCGGGCAGCGGAGCCAGCGGCGCCAGGG
CGCTGGGCTTGCGCATCTGCTGCGGCGGCGGGCCCTGTGCCGGCT
Found at i:75440 original size:12 final size:12
Alignment explanation
Indices: 75413--75449 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
75403 GAGGACCCTG
75413 GTTCGGGCCC-T
1 GTTCGGGCCCAT
75424 G--CGGGCCCAT
1 GTTCGGGCCCAT
75434 GTTCGGGCCCAT
1 GTTCGGGCCCAT
75446 GTTC
1 GTTC
75450 ATCTGGCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 7 0.30
10 2 0.09
11 1 0.04
12 13 0.57
ACGTcount: A:0.05, C:0.35, G:0.35, T:0.24
Consensus pattern (12 bp):
GTTCGGGCCCAT
Left flanking sequence: Indices 74913 -- 75412
GCCGCCTCCTCCACTATCAGCTCCTCCTTCTTGGCGGGCTTCTTCTTGGGCAGCTCGGGCACCAG
GTTCTTGCGACGCCGCTTGTCGGCAGGCGCGTCCAGCGCCGGGGTAAGCGGGAAGTCCTTTTTGA
GCGCCAGCCCGGTGCCGCTGGCCTTGCGCCCGCGCTTTGCCGGCTCCTTCTTCTTTTTGAGCCCG
GGCAGCGTCTTGGGCAGCGCCAGCGCCGGCAGCTTCTGCGGGACGGGCATGGGCATCGGTTTGAG
GCCGTTGGGCGGTTGCGAGGGGCCGTTCTGGCCCATGAGGTGTGGCGGCACCGCGGGCAGCTGCG
GGTTGCCGTGGGGGCCCGGTGGTCCCTGGCTGGGTCCCTGGTTGGGTCCCTGGGGTCCCTGGGGT
CCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCTTGCGGCCC
TTGGTTTGGTCCTTGTGGGCCCTGGTTTGGTCCTTGAGGACCCTG
Right flanking sequence: Indices 75450 -- 75949
ATCTGGCCCATCCCCTGGCCCATCATCTGGCCCTGGCCCTGGCCCATCGCCATCTGCATCCCCTG
CTCGGGCATCATCAGGAACATCAGCTCCGACAGCCCGTTGTTGCGGGCAATGTCCAACCGCTTCT
TGTTCTGTTTCTCCAACAACATCAACTGCTCCTGGTAGTCCTGGAGCGCCAGCATGTTGCGGGTC
AAGCTGGGGTTCTCCTTGGTGGCGCTGACCGCAGGCAGCCCCTTGAGCGGGTACTGCTGCGCCTG
GGCCATCTGCGGCGGCACCGGGCCCAGCCCAGGCGGGATCTGGCCCTGGTATGGGTACGGCGGGC
CCATCCGCGTGGCGGGCAGCGGAGCCAGCGGCGCCAGGGCGCTGGGCTTGCGCATCTGCTGCGGC
GGCGGGCCCTGTGCCGGCTGGGCCGCGGGCTGTGGCGGCTGTGCGGGCTGGCCCTGGCCCTGGGC
GCCCTGCTGCTGCTGGCGCAACGTGTTCATCTGGTTCTGGGCCAT
Found at i:75480 original size:24 final size:24
Alignment explanation
Indices: 75448--75497 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
75438 GGGCCCATGT
75448 TCATCTGGCCCAT-CCCCTGGCCCA
1 TCATCTGGCCC-TGCCCCTGGCCCA
*
75472 TCATCTGGCCCTGGCCCTGGCCCA
1 TCATCTGGCCCTGCCCCTGGCCCA
75496 TC
1 TC
75498 GCCATCTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.10, C:0.48, G:0.20, T:0.22
Consensus pattern (24 bp):
TCATCTGGCCCTGCCCCTGGCCCA
Left flanking sequence: Indices 74948 -- 75447
GGGCTTCTTCTTGGGCAGCTCGGGCACCAGGTTCTTGCGACGCCGCTTGTCGGCAGGCGCGTCCA
GCGCCGGGGTAAGCGGGAAGTCCTTTTTGAGCGCCAGCCCGGTGCCGCTGGCCTTGCGCCCGCGC
TTTGCCGGCTCCTTCTTCTTTTTGAGCCCGGGCAGCGTCTTGGGCAGCGCCAGCGCCGGCAGCTT
CTGCGGGACGGGCATGGGCATCGGTTTGAGGCCGTTGGGCGGTTGCGAGGGGCCGTTCTGGCCCA
TGAGGTGTGGCGGCACCGCGGGCAGCTGCGGGTTGCCGTGGGGGCCCGGTGGTCCCTGGCTGGGT
CCCTGGTTGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGGTCCCTGGGG
TCCCTGGGGTCCCTGGGGTCCTTGCGGCCCTTGGTTTGGTCCTTGTGGGCCCTGGTTTGGTCCTT
GAGGACCCTGGTTCGGGCCCTGCGGGCCCATGTTCGGGCCCATGT
Right flanking sequence: Indices 75498 -- 75997
GCCATCTGCATCCCCTGCTCGGGCATCATCAGGAACATCAGCTCCGACAGCCCGTTGTTGCGGGC
AATGTCCAACCGCTTCTTGTTCTGTTTCTCCAACAACATCAACTGCTCCTGGTAGTCCTGGAGCG
CCAGCATGTTGCGGGTCAAGCTGGGGTTCTCCTTGGTGGCGCTGACCGCAGGCAGCCCCTTGAGC
GGGTACTGCTGCGCCTGGGCCATCTGCGGCGGCACCGGGCCCAGCCCAGGCGGGATCTGGCCCTG
GTATGGGTACGGCGGGCCCATCCGCGTGGCGGGCAGCGGAGCCAGCGGCGCCAGGGCGCTGGGCT
TGCGCATCTGCTGCGGCGGCGGGCCCTGTGCCGGCTGGGCCGCGGGCTGTGGCGGCTGTGCGGGC
TGGCCCTGGCCCTGGGCGCCCTGCTGCTGCTGGCGCAACGTGTTCATCTGGTTCTGGGCCATTTG
CTGCATGCGATTGGGGTTGTAGAACGGTGCCTGGCCCTGGCCCTG
Found at i:76748 original size:26 final size:25
Alignment explanation
Indices: 76719--76779 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
76709 GTGTTTTGGG
76719 GGGTGTGGTGG-GCGTGTGGGCCTGGT
1 GGGTGTGGTGGTG-GTGTGGG-CTGGT
76745 GGGTGTGGTTGGTGGTGTGGGCTGGT
1 GGGTGTGG-TGGTGGTGTGGGCTGGT
76771 -GGTG-GGTGG
1 GGGTGTGGTGG
76780 CGCTACGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 4 0.12
26 13 0.39
27 10 0.30
28 1 0.03
ACGTcount: A:0.00, C:0.07, G:0.64, T:0.30
Consensus pattern (25 bp):
GGGTGTGGTGGTGGTGTGGGCTGGT
Left flanking sequence: Indices 76219 -- 76718
CCAGTTTCGCGTGGAATACGTCCCAGAACACCAGCCACCACTCGTAGAGGAACCCCTGCGGGCAG
TCCATGGCGATGGCGACCGCGGGGAGGCTGGCGTCACGGGGCGGCTGGCCCTGGGGCGTGGGCGG
AGTCAGCGTCAGGCCGTTGGTCTGGGGGTCGCCCAGCGGCACGTCCGCCTCCAGGACAAAGATGC
GGGCCGTCTGGGGCATCCGCTGCTTCACCAAAAAGTCGTAGATGTAGGCGTTCAAGAGCTGTTTC
ACCAGCGCCGCCAGCTGGTCGCTGACGGGGCGCCCGTCGGCGTACCCCTTTTTGTCCGAGCCGGG
CGTCCGCTTGTTTAACATGTGCGGCGTGCTGTGGTGGCTCATCCCGGGGAGGACTGGTCAACAGT
GTAGGGACAACGGGTGGTGTTTTTTTTTAACCAGCGCGAAAAAGGTTGAGGTGACGGCACGGGGA
GACGACTTGGGAGCGCTGCGGCGGGGCGTGGCGGGGTGTTTTGGG
Right flanking sequence: Indices 76780 -- 77279
CGCTACGGTGTGGTCAGGCTACTGGTGGAGGTGGTGGAGGAAGGTGGTGGAGGGAGGTGGTGGGA
GATGGAAGCGTAGAGAAAGCAGTGGAATTAGTAGACGCGACGGTGGCGGCGGTGGCGACGGTAGC
AAACGGAGGGGAAAAAGGCCAGTCTACGGCTCCACCGTGACCGACCTCACCACCCGGGTGGCAGC
CCCCGATTGGGCCGCGCACGACTACCCCTCAAACTGACCCTGTCCGATAAGCGAGTGACGCCTGT
CTCGGCACGCGCCTGCGTGGGCTGTTTTGCGCCGGGTGGAGAGAGGTGGGCGCGAGAGTGTAGGG
GGGTGTGGTTAGTGGTGTGGTTGGTGGTGTGTTTGGCGGCGGTTTTTCGGGTGGTGTAGTGTCTC
GGGTGTCTGATTGTCATTCACCGGGATCTCGAGCTGCCGACGGGACACGGCGACGCAAAACAAAG
CGTCGAAGAAGATGGGCAAGGGGGACAGAAGTAATATGCTACGCT
Found at i:76826 original size:13 final size:13
Alignment explanation
Indices: 76808--76842 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
76798 CTACTGGTGG
76808 AGGTGGTGGAGGA
1 AGGTGGTGGAGGA
*
76821 AGGTGGTGGAGGG
1 AGGTGGTGGAGGA
76834 AGGTGGTGG
1 AGGTGGTGG
76843 GAGATGGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.66, T:0.17
Consensus pattern (13 bp):
AGGTGGTGGAGGA
Left flanking sequence: Indices 76308 -- 76807
AGGCTGGCGTCACGGGGCGGCTGGCCCTGGGGCGTGGGCGGAGTCAGCGTCAGGCCGTTGGTCTG
GGGGTCGCCCAGCGGCACGTCCGCCTCCAGGACAAAGATGCGGGCCGTCTGGGGCATCCGCTGCT
TCACCAAAAAGTCGTAGATGTAGGCGTTCAAGAGCTGTTTCACCAGCGCCGCCAGCTGGTCGCTG
ACGGGGCGCCCGTCGGCGTACCCCTTTTTGTCCGAGCCGGGCGTCCGCTTGTTTAACATGTGCGG
CGTGCTGTGGTGGCTCATCCCGGGGAGGACTGGTCAACAGTGTAGGGACAACGGGTGGTGTTTTT
TTTTAACCAGCGCGAAAAAGGTTGAGGTGACGGCACGGGGAGACGACTTGGGAGCGCTGCGGCGG
GGCGTGGCGGGGTGTTTTGGGGGGTGTGGTGGGCGTGTGGGCCTGGTGGGTGTGGTTGGTGGTGT
GGGCTGGTGGTGGGTGGCGCTACGGTGTGGTCAGGCTACTGGTGG
Right flanking sequence: Indices 76843 -- 77342
GAGATGGAAGCGTAGAGAAAGCAGTGGAATTAGTAGACGCGACGGTGGCGGCGGTGGCGACGGTA
GCAAACGGAGGGGAAAAAGGCCAGTCTACGGCTCCACCGTGACCGACCTCACCACCCGGGTGGCA
GCCCCCGATTGGGCCGCGCACGACTACCCCTCAAACTGACCCTGTCCGATAAGCGAGTGACGCCT
GTCTCGGCACGCGCCTGCGTGGGCTGTTTTGCGCCGGGTGGAGAGAGGTGGGCGCGAGAGTGTAG
GGGGGTGTGGTTAGTGGTGTGGTTGGTGGTGTGTTTGGCGGCGGTTTTTCGGGTGGTGTAGTGTC
TCGGGTGTCTGATTGTCATTCACCGGGATCTCGAGCTGCCGACGGGACACGGCGACGCAAAACAA
AGCGTCGAAGAAGATGGGCAAGGGGGACAGAAGTAATATGCTACGCTGGCGGCCGGCGAGACTCG
CCAACCACGGCTGTCGCTGGCTAGCCGGGGGCCGCTTCGGCTACC
Found at i:77140 original size:12 final size:12
Alignment explanation
Indices: 77106--77140 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
77096 AGTGTAGGGG
*
77106 GGTGTGGTTAGT
1 GGTGTGGTTGGT
77118 GGTGTGGTTGGT
1 GGTGTGGTTGGT
*
77130 GGTGTGTTTGG
1 GGTGTGGTTGG
77141 CGGCGGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.03, C:0.00, G:0.54, T:0.43
Consensus pattern (12 bp):
GGTGTGGTTGGT
Left flanking sequence: Indices 76606 -- 77105
AGTGTAGGGACAACGGGTGGTGTTTTTTTTTAACCAGCGCGAAAAAGGTTGAGGTGACGGCACGG
GGAGACGACTTGGGAGCGCTGCGGCGGGGCGTGGCGGGGTGTTTTGGGGGGTGTGGTGGGCGTGT
GGGCCTGGTGGGTGTGGTTGGTGGTGTGGGCTGGTGGTGGGTGGCGCTACGGTGTGGTCAGGCTA
CTGGTGGAGGTGGTGGAGGAAGGTGGTGGAGGGAGGTGGTGGGAGATGGAAGCGTAGAGAAAGCA
GTGGAATTAGTAGACGCGACGGTGGCGGCGGTGGCGACGGTAGCAAACGGAGGGGAAAAAGGCCA
GTCTACGGCTCCACCGTGACCGACCTCACCACCCGGGTGGCAGCCCCCGATTGGGCCGCGCACGA
CTACCCCTCAAACTGACCCTGTCCGATAAGCGAGTGACGCCTGTCTCGGCACGCGCCTGCGTGGG
CTGTTTTGCGCCGGGTGGAGAGAGGTGGGCGCGAGAGTGTAGGGG
Right flanking sequence: Indices 77141 -- 77640
CGGCGGTTTTTCGGGTGGTGTAGTGTCTCGGGTGTCTGATTGTCATTCACCGGGATCTCGAGCTG
CCGACGGGACACGGCGACGCAAAACAAAGCGTCGAAGAAGATGGGCAAGGGGGACAGAAGTAATA
TGCTACGCTGGCGGCCGGCGAGACTCGCCAACCACGGCTGTCGCTGGCTAGCCGGGGGCCGCTTC
GGCTACCGGAAAAAGAAATGTGTCACTTCCCAAAGGGGATTGACGATCTGGTGATGCCATGGCCC
GACTGCCTCAGCGAGTGGGCGGTCATCACTCGCCAAACCCCGCGGGGTTGCCGAGGGTCCTGGCC
TCTGGTCCGGCATGCGCCCCATCTGCAGGCCGTGTGGCGTGGTTGGCCATCGCCGCCAGGGGTCA
TGTGCGACTAGGGGCATTGTTAGGTGGTTGCTTGTAGAGGTTGGGTTGTTTGCTGTGTGGTGTGT
TGGGATATCGTACTGTTGTGTGTGTCGTAGTAGTGTGTGTGTCGT
Found at i:77632 original size:17 final size:18
Alignment explanation
Indices: 77612--77679 Score: 104
Period size: 18 Copynumber: 3.9 Consensus size: 18
77602 ATCGTACTGT
77612 TGTG-TGTGTCGTAGTAG
1 TGTGTTGTGTCGTAGTAG
77629 TGTG-TGTGTCGTAGTAG
1 TGTGTTGTGTCGTAGTAG
* *
77646 TGTGTTGTGTCCTAGTTG
1 TGTGTTGTGTCGTAGTAG
77664 TGTGTTGTGTCGTAGT
1 TGTGTTGTGTCGTAGT
77680 TCTGTTTCGT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
17 21 0.45
18 26 0.55
ACGTcount: A:0.09, C:0.07, G:0.38, T:0.46
Consensus pattern (18 bp):
TGTGTTGTGTCGTAGTAG
Left flanking sequence: Indices 77112 -- 77611
GTTAGTGGTGTGGTTGGTGGTGTGTTTGGCGGCGGTTTTTCGGGTGGTGTAGTGTCTCGGGTGTC
TGATTGTCATTCACCGGGATCTCGAGCTGCCGACGGGACACGGCGACGCAAAACAAAGCGTCGAA
GAAGATGGGCAAGGGGGACAGAAGTAATATGCTACGCTGGCGGCCGGCGAGACTCGCCAACCACG
GCTGTCGCTGGCTAGCCGGGGGCCGCTTCGGCTACCGGAAAAAGAAATGTGTCACTTCCCAAAGG
GGATTGACGATCTGGTGATGCCATGGCCCGACTGCCTCAGCGAGTGGGCGGTCATCACTCGCCAA
ACCCCGCGGGGTTGCCGAGGGTCCTGGCCTCTGGTCCGGCATGCGCCCCATCTGCAGGCCGTGTG
GCGTGGTTGGCCATCGCCGCCAGGGGTCATGTGCGACTAGGGGCATTGTTAGGTGGTTGCTTGTA
GAGGTTGGGTTGTTTGCTGTGTGGTGTGTTGGGATATCGTACTGT
Right flanking sequence: Indices 77680 -- 78179
TCTGTTTCGTTTGTCCGGTTGTGTATGTTGTCTTGGTCTATGGCACGAGGGTAGTGTGGTGGGGC
TACTATGGCCTAAACAAAGCGTACCAAAGATTTAAGCGCCTTCGACACAGTCCACGGGCCCCACA
GGCCCACCAATCGCCCGCGCGCCCCCCGGCCCGCTCGTGTCGCGCGGTGGCTATTGGCTCGCCCG
ACCCGCCTGGCTAGTGCGTCTATATTTAGCGCCACCAATCAGCCGCCGACCAAAGGAGGGGCAGT
CCACAACACGCCACGCGGTCTACAAACACGTCCGTTTGGCCCCTGTGCCCCCGTCCACCGCCCCT
CCGGCCTTTGTGCCCTACCCGTCTCCGTGCTACTTTACTGGTTATGCCGGAACCGGCATCCCTAG
CCTCAGCCTTAATGCGGCACCAAAACAAAGCTAAGCCAAGGCCCACTCAGGCCTGACGCAAGGCC
CAACAGACCTAAACCAAAACACGTCTCCAGCGATCCGTATCGCCA
Found at i:78200 original size:9 final size:9
Alignment explanation
Indices: 78182--78242 Score: 86
Period size: 9 Copynumber: 6.8 Consensus size: 9
78172 TATCGCCACG
*
78182 TATCGCACC
1 TATCGTACC
78191 TATCGTACC
1 TATCGTACC
*
78200 TATCGTCCC
1 TATCGTACC
78209 TATCGTACC
1 TATCGTACC
*
78218 TATCGTCCC
1 TATCGTACC
*
78227 TATCGCACC
1 TATCGTACC
78236 TATCGTA
1 TATCGTA
78243 ACCATGTATC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.20, C:0.38, G:0.11, T:0.31
Consensus pattern (9 bp):
TATCGTACC
Left flanking sequence: Indices 77682 -- 78181
TGTTTCGTTTGTCCGGTTGTGTATGTTGTCTTGGTCTATGGCACGAGGGTAGTGTGGTGGGGCTA
CTATGGCCTAAACAAAGCGTACCAAAGATTTAAGCGCCTTCGACACAGTCCACGGGCCCCACAGG
CCCACCAATCGCCCGCGCGCCCCCCGGCCCGCTCGTGTCGCGCGGTGGCTATTGGCTCGCCCGAC
CCGCCTGGCTAGTGCGTCTATATTTAGCGCCACCAATCAGCCGCCGACCAAAGGAGGGGCAGTCC
ACAACACGCCACGCGGTCTACAAACACGTCCGTTTGGCCCCTGTGCCCCCGTCCACCGCCCCTCC
GGCCTTTGTGCCCTACCCGTCTCCGTGCTACTTTACTGGTTATGCCGGAACCGGCATCCCTAGCC
TCAGCCTTAATGCGGCACCAAAACAAAGCTAAGCCAAGGCCCACTCAGGCCTGACGCAAGGCCCA
ACAGACCTAAACCAAAACACGTCTCCAGCGATCCGTATCGCCACG
Right flanking sequence: Indices 78243 -- 78742
ACCATGTATCCTTCCATTACTACGTACTGTCACCATACCGTTCATTAACCCATTAAAGACCTAGT
ACCCAATAAAACGAATCCGTATCCTAACGTCCATTTTCCGTCCCTTACCAAACCCGGTTGTCCCC
GCGAGCGGTGTTGTTCCAGATCAGAGCCTGGGACCCGCCAAACAGCGGGGCCACGGGCGCCAGCT
CGAACGGGGTGAACGGGTCAAACTTGGCACCCAGGAGGCTCGCGGGCGGCAGCGCGGGAGAGGCC
ATCCCCAGCACCGCAGGCGAACCCTGGCTTGCCAGCGGAGGGCCCAGCCACAACGGAGGAGGCTG
GTGTCGACGACGCGGGGTCTGCGTCGTTTTCTTGTAGTCAAACGCGGGCTGCGCCGGCTGGCGGT
CAACCACGAGCCTCGAGATCAAGTCCTGCTGGTCGCTGAACGGCTCAGTCACGAGCGACCGCTTG
GGGAACCCTTGTTGTGTAGCCATGACTTGATGGAATGTAGGCGAA
Found at i:78210 original size:18 final size:18
Alignment explanation
Indices: 78189--78241 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
78179 ACGTATCGCA
78189 CCTATCGTACCTATCGTC
1 CCTATCGTACCTATCGTC
78207 CCTATCGTACCTATCGTC
1 CCTATCGTACCTATCGTC
*
78225 CCTATCGCACCTATCGT
1 CCTATCGTACCTATCGT
78242 AACCATGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.17, C:0.40, G:0.11, T:0.32
Consensus pattern (18 bp):
CCTATCGTACCTATCGTC
Left flanking sequence: Indices 77689 -- 78188
TTTGTCCGGTTGTGTATGTTGTCTTGGTCTATGGCACGAGGGTAGTGTGGTGGGGCTACTATGGC
CTAAACAAAGCGTACCAAAGATTTAAGCGCCTTCGACACAGTCCACGGGCCCCACAGGCCCACCA
ATCGCCCGCGCGCCCCCCGGCCCGCTCGTGTCGCGCGGTGGCTATTGGCTCGCCCGACCCGCCTG
GCTAGTGCGTCTATATTTAGCGCCACCAATCAGCCGCCGACCAAAGGAGGGGCAGTCCACAACAC
GCCACGCGGTCTACAAACACGTCCGTTTGGCCCCTGTGCCCCCGTCCACCGCCCCTCCGGCCTTT
GTGCCCTACCCGTCTCCGTGCTACTTTACTGGTTATGCCGGAACCGGCATCCCTAGCCTCAGCCT
TAATGCGGCACCAAAACAAAGCTAAGCCAAGGCCCACTCAGGCCTGACGCAAGGCCCAACAGACC
TAAACCAAAACACGTCTCCAGCGATCCGTATCGCCACGTATCGCA
Right flanking sequence: Indices 78242 -- 78741
AACCATGTATCCTTCCATTACTACGTACTGTCACCATACCGTTCATTAACCCATTAAAGACCTAG
TACCCAATAAAACGAATCCGTATCCTAACGTCCATTTTCCGTCCCTTACCAAACCCGGTTGTCCC
CGCGAGCGGTGTTGTTCCAGATCAGAGCCTGGGACCCGCCAAACAGCGGGGCCACGGGCGCCAGC
TCGAACGGGGTGAACGGGTCAAACTTGGCACCCAGGAGGCTCGCGGGCGGCAGCGCGGGAGAGGC
CATCCCCAGCACCGCAGGCGAACCCTGGCTTGCCAGCGGAGGGCCCAGCCACAACGGAGGAGGCT
GGTGTCGACGACGCGGGGTCTGCGTCGTTTTCTTGTAGTCAAACGCGGGCTGCGCCGGCTGGCGG
TCAACCACGAGCCTCGAGATCAAGTCCTGCTGGTCGCTGAACGGCTCAGTCACGAGCGACCGCTT
GGGGAACCCTTGTTGTGTAGCCATGACTTGATGGAATGTAGGCGA
Found at i:80460 original size:9 final size:9
Alignment explanation
Indices: 80448--80476 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
80438 ACCACCTATA
80448 CCACCCGTT
1 CCACCCGTT
80457 CCACCCGTT
1 CCACCCGTT
80466 CCACCCGTT
1 CCACCCGTT
80475 CC
1 CC
80477 TTTCACCGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.59, G:0.10, T:0.21
Consensus pattern (9 bp):
CCACCCGTT
Left flanking sequence: Indices 79948 -- 80447
TAGCCGAGTGTTGATCGCAGTGGTGACAGCACATGTGACAGCTGGTGGGCGCAGTGTTTCAGGGA
ACCCAGTCACGCTTAGCTCGTCTAGCTGACACACGCCACCTTTCCCGTTTGGGTGTGTGGAATGG
AAAGGGTGGGGAATGTTGTGCTGCAGTGGTGGAATGTTTGCGTTTGCGGTAGAGGAGTCTATGGG
GCTAGCTCTGGACAACCATAAGAGCTGTTTCGAAAGTTTTCCAAGCGGTCGGTCAGGTTGTAGAC
GGTCTCGAACGAGTATTTGTGCGTCTCGAGCCTCTCACGTTGAACACTCCACACGGACCGGTGGT
ACACCGCGTATACGCGTCAAGCACCCGTGCCCTGTCCAACACGTAATTCCTTCCCAATTGGTCCC
GTTTCCTCGCCACATTCCTTCAAGTCTATCCTCGTGTGACTCTAAGTAAAATCACCCTGATACGA
CTCATAAACACCCAAAAACGTGCTATCTAAACCGTACCACCTATA
Right flanking sequence: Indices 80477 -- 80976
TTTCACCGTCCACTGCCCTCCCCTCTCTTCTAAACACTGTTTATTCTCTATAATGCAGTTAAAGG
CCCTTACCGTAGTTGCCGTTCTCGAAAAAGGTAAAGATGATCGACACAATGCGCTCCAACGCCGC
CAACCACGCCGTCAACTTCTCCATTACCACCGTCTGGTCCGCCCCAAGCTTCTCAAAGAAGTCCT
TGCGGTAGGGGCACGCCAGCATCGCCAACTTGAAGATGGGCTTGACCAACATCCCGTGGTACTTG
GAGAGGGTCTTGCCATACGAGTCAGTGAACGCCTTCAGCAACTCAATGTCGGGACGGTCCACCGC
CTCCCGCATCGCCTGGGCGGTGAACTGCAACCCGCGCAGCAACCACAACAACCCCTGGGTGGCGG
TCTTCTTCTTGTCGCCGACCTCAGAGAGGATGAGACCCTGCAAGGTGTCAGCGCGAGGGTCGGCC
TCCATCTTTTTGGACACCTTCTCGATGTTCCCGTTCATGTCGGAG
Found at i:86373 original size:24 final size:24
Alignment explanation
Indices: 86345--86422 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
86335 GTAGTACACG
86345 GGGAGATAGAGCTGGTGGTGGTGT
1 GGGAGATAGAGCTGGTGGTGGTGT
** * * * *
86369 GGGAGCCAGTGTTGTGTCGTTGATG-
1 GGGAGATAGAGCTG-GT-GGTGGTGT
* *
86394 GGGAGATAGAACTGCTGGTGGTGT
1 GGGAGATAGAGCTGGTGGTGGTGT
86418 GGGAG
1 GGGAG
86423 CGCCTTTGCT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
23 5 0.14
24 16 0.43
25 11 0.30
26 5 0.14
ACGTcount: A:0.17, C:0.08, G:0.50, T:0.26
Consensus pattern (24 bp):
GGGAGATAGAGCTGGTGGTGGTGT
Left flanking sequence: Indices 85845 -- 86344
TGGCGGGGCTCATGGACGAGGCGGACGACGACGTCCACGTCGGAGACAAACGCATAGTCGTGGAC
GACGACGACGACCTCCGCGCGGACTTCTACCGAGCCAACCGCCTCCCGATCCCGCCCCCGCTCTA
CCACTCGCAGCAGGGGCTTGACGAGCACGAGAAGGTGGCTGCGTTGACGCCCGAGGCGGTGCGTC
GGTTCTACGAGGCGATTGCGCCCGACGACTTGGCAGCGATGCTCCGCTCGGAGCGGGTGCGCTGG
CACCCGGACAAGGCGATGGCCGCGGTGCACCCTGCGGCCGTGGTGCTCCAGGTGTCGCTGGTAGT
GAACAGCTTGTACCAGGAAGAGGTAGACTGATATAGACTTGCATTAACGACATTATGAAATAGGA
ATAGGAAGGGTAGAATAGGTGGGGCTGGTGATAGGAGCCAGAGTTGCTGGTGTGGTAGGGGCCAG
GGTGATGTGGTGGAGTGGGAGCCAGAGTTGGTGGTGTAGTACACG
Right flanking sequence: Indices 86423 -- 86922
CGCCTTTGCTGGTGGTCAAGGGAACAGAGTTGATGAGCCAGCTTTTAGCCTTGTATGAGCGATGT
CAGATTCGGGTACTGGCGGAGATGGTGGTTATGTGTGGTTACAGAGTATCAGCTGGCTCTCGGTG
CACCTTCCAGCTTTCAACACTGCGTACGGGTGGGATTGGGCATTGAATTGTCAGTTCAGATAACT
GTTGATTGTTAGTGGACACATCCTGGTACCCAAGGTGTTCGAGTAAATCCCACCTACTTGTTAGC
ACTTTGTAACGGAGAACAACTCCAAGTCTTCATGCTCTTTGTAACGGAAAACAACTCCAAGTCTT
CATGCTTGTATGTGAGACTGTCGCTACACGCATGAGACTGCTTGTGCGTTTCGCTTGTTGACTAC
TCGGGGCTAATGGCTGCAAAAACGGAAACCGAAATACGCGACATACCCGTAAGCCATAGCACTAT
CCTGACCAGCGCAATCCGCTAATTACGTCCCCACCACCACAAAAA
Found at i:86730 original size:35 final size:35
Alignment explanation
Indices: 86684--86753 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
86674 CTTGTTAGCA
*
86684 CTTTGTAACGGAGAACAACTCCAAGTCTTCATGCT
1 CTTTGTAACGGAAAACAACTCCAAGTCTTCATGCT
86719 CTTTGTAACGGAAAACAACTCCAAGTCTTCATGCT
1 CTTTGTAACGGAAAACAACTCCAAGTCTTCATGCT
86754 TGTATGTGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (35 bp):
CTTTGTAACGGAAAACAACTCCAAGTCTTCATGCT
Left flanking sequence: Indices 86184 -- 86683
AGGAAGAGGTAGACTGATATAGACTTGCATTAACGACATTATGAAATAGGAATAGGAAGGGTAGA
ATAGGTGGGGCTGGTGATAGGAGCCAGAGTTGCTGGTGTGGTAGGGGCCAGGGTGATGTGGTGGA
GTGGGAGCCAGAGTTGGTGGTGTAGTACACGGGGAGATAGAGCTGGTGGTGGTGTGGGAGCCAGT
GTTGTGTCGTTGATGGGGAGATAGAACTGCTGGTGGTGTGGGAGCGCCTTTGCTGGTGGTCAAGG
GAACAGAGTTGATGAGCCAGCTTTTAGCCTTGTATGAGCGATGTCAGATTCGGGTACTGGCGGAG
ATGGTGGTTATGTGTGGTTACAGAGTATCAGCTGGCTCTCGGTGCACCTTCCAGCTTTCAACACT
GCGTACGGGTGGGATTGGGCATTGAATTGTCAGTTCAGATAACTGTTGATTGTTAGTGGACACAT
CCTGGTACCCAAGGTGTTCGAGTAAATCCCACCTACTTGTTAGCA
Right flanking sequence: Indices 86754 -- 87253
TGTATGTGAGACTGTCGCTACACGCATGAGACTGCTTGTGCGTTTCGCTTGTTGACTACTCGGGG
CTAATGGCTGCAAAAACGGAAACCGAAATACGCGACATACCCGTAAGCCATAGCACTATCCTGAC
CAGCGCAATCCGCTAATTACGTCCCCACCACCACAAAAAGCCCAATCACACTTGTCACCAGGCCT
TATCGGGGGTATACCCGCGATATCTGCGCCAAGACGCATCCCAGCCGGTGGTCCGCTTGACAGGA
GAGACGTGAGCCATCGCAATGGACTTATTGGGTAATCTCCGTGGTTAAATTAGCAGCCTATTGTT
CGCGGCCCAACGCGGTGACAACGCGTTGACAACCAAACCCCGGAGTGCTACTATCTAGCACAAAA
AGCAAACTCAAGTGGCACCAGTCGACCCAATTGACACCTCGCCTGACAACCAGCGACCAATGGAA
CCGATCTACTCATCGCCCCACGCAATCTCCATCGCCTCGACGCAA
Found at i:92674 original size:21 final size:21
Alignment explanation
Indices: 92645--92684 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
92635 CAGCCTTCTT
* *
92645 CTACTGGCACCACCCCCAAGC
1 CTACCGGCACCAACCCCAAGC
92666 CTACCGGCACCAACCCCAA
1 CTACCGGCACCAACCCCAA
92685 CTGTAAGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.53, G:0.12, T:0.07
Consensus pattern (21 bp):
CTACCGGCACCAACCCCAAGC
Left flanking sequence: Indices 92145 -- 92644
CGACTGTGAGTTCTACGAGACCATCTACAAGATTGTGTTGAACTTCATCTCCGACTTGCCCAACC
AGATCGCCTCTTTGTTGGGCGGTGGCAAGCGTGACTTGTCGTTGGAGACCGACCTCCAGGTTGCT
CCTTCCTCGCACTTGGTGATGCGCGACTCCACTCAGGACTTGGTCACCTCGTTGATGATGTCGTT
GAAGAACTCCGGTTTGGCCAACCAGGTCGTTGGTGAGTTGGTCAAGGACGAGGGCTTCCGTACCT
GGGGTGTCCAGCTTATCAAGGACTTGTTCTCCTCTGGTGCTCTTACCCTCCCCGACCTCCTTGAC
GCCGTCATCAAGTCTGGTTTGGTTCCCGCCTTGATCGAGGGCTTGTTGTCCTTCGACACCATCAA
GGACGTCATTGTCAACGCTTTGGCCGCTGCCTTCGGCAAGTGTGACGGTGAGACCTTGACCTCGT
TGTCCGCTTCCAAGACCGAGACTGCCACCATCCCTCAGCCTTCTT
Right flanking sequence: Indices 92685 -- 93184
CTGTAAGAAGAGAAGAAGATCTTACAACTACAACTACTAAGCAGTGGGCACCCCACGAGCACTAA
GCAAGTTAGTGTGAGTGGATTATAGACCCGGTGCTCTGCCTGGTGCAGAACCCCATGTGGTAATA
CCCACTGGCCGCGTTGGCCAGTGTTTGTTTTTGTATGTTTCCCTCGTTTTTGCAATCGTTTTGGT
ACTTCTTGTTTCTAGGTAATTTAAAGAGTTATGAGACAAATTTTATGAAAAGTGTAGTGATGGAG
AGCACCGCAAGCAGCAACGCAGGCGGTGTGTTTTTGAATATGCTCTTTGGGAAGGGGTTCGTCAT
GCACGCTGACTTCCCCTTTGAGTATCACTCGTATTCCTGAAAAGCAACACGATAGCAAATGCCTT
AATCGGGTAGGCACAGATGGTGGGGTGCAAAGGACGGTGCACGGTGAACCCCGGATGTAACTCAA
CCGAGTAATATAGTTGAATTGGTTCTTTCTATATTTTATTTTACT
Found at i:99054 original size:12 final size:13
Alignment explanation
Indices: 99039--99073 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
99029 GGACACCCCT
99039 CAGCG-CGAAAAC
1 CAGCGCCGAAAAC
99051 CAGCGCCG-AAAC
1 CAGCGCCGAAAAC
99063 CAGCGCCGAAA
1 CAGCGCCGAAA
99074 CCCGCTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.37, C:0.37, G:0.26, T:0.00
Consensus pattern (13 bp):
CAGCGCCGAAAAC
Left flanking sequence: Indices 98539 -- 99038
CAGGCCGACCACCACTCGAGCGCGAACAGCGACGGGGGTGACTTTGACATTTAGGACAATAGAGA
CGAATAGGTAAAGCTAGGGGACGGAGAGAGCGATTGCGTAAGCAGTTGTGTGTGTGATTGTGCGT
AAGTTGTGCGTTAGGTAACCGTGGTGGTCTTTCCATGGGTCTAGAACTGCGAAGTAGTCGCATTG
TTTACGCCATAGGTTAAAACCACACCGTGAATCCTCTAACGAAAGTACTGAAAAATAAGTAGAAA
CTGGTTTATGCTTTGATATTGGACACTGTAACACCATCGCACTTCAAGCCTACTCTCCTACACTG
CTGTACACTCCCCGCTGTTTCATCCGTTCGCATTCTTCGCGTTCTTCGCGGTGACGCGTTTACAT
TAGCTGCATACACACCACCACCTCCACCATGGGCTACCTAGCCGGCCTTGAGGCCGAGTGGCCGG
ACATTCAGCGCCAGTGCGGGATACTAGACCCTCCTGGACACCCCT
Right flanking sequence: Indices 99074 -- 99573
CCCGCTTCACGCCATGTTTCGTTCGCGGAAGAAACCAAACCCAATGCCACCACCCAGGTCCAGCG
CCTACGGGCTGCGCTCGTGTGCAAGGACAGCGAGCTAGCGGTGAAATACCGCGAGGTGGCCACGA
AACAGGTGGTCATTGACCACCAGATCGAGTCCCTTTCGAGAAAGGACCGCGAGATCGCCGAGCTC
CGCCAGGCGCTAGCAGCAGAAAGAGAAGCACATGCCCGTCTGCGGGCCAAGTATGAGCGCGAGAA
GGTGCTGTGGCACGACCAGAGCCAGATGCGTGACGCCGAGATGAAACGATTGAAGAAGGAGTTGA
TGGGTGCGTTCAGAAAGGCTACGGCACCGGAGGAAACGGTTCCCCGACGACGAGTGAGCCCAGGG
CTGGTCCCGGGGCTGGTCCCGGGGCTGTCTGAGGATACCGTGGACACCGCGTTTCTCATGCGGTT
TGCCGATGAGACCGAGCCAATGACCCAGGTTGAGAAGCCAACGAG
Found at i:99074 original size:12 final size:12
Alignment explanation
Indices: 99047--99075 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
99037 CTCAGCGCGA
99047 AAACCAGCGCCG
1 AAACCAGCGCCG
99059 AAACCAGCGCCG
1 AAACCAGCGCCG
99071 AAACC
1 AAACC
99076 CGCTTCACGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.41, G:0.21, T:0.00
Consensus pattern (12 bp):
AAACCAGCGCCG
Left flanking sequence: Indices 98547 -- 99046
CCACCACTCGAGCGCGAACAGCGACGGGGGTGACTTTGACATTTAGGACAATAGAGACGAATAGG
TAAAGCTAGGGGACGGAGAGAGCGATTGCGTAAGCAGTTGTGTGTGTGATTGTGCGTAAGTTGTG
CGTTAGGTAACCGTGGTGGTCTTTCCATGGGTCTAGAACTGCGAAGTAGTCGCATTGTTTACGCC
ATAGGTTAAAACCACACCGTGAATCCTCTAACGAAAGTACTGAAAAATAAGTAGAAACTGGTTTA
TGCTTTGATATTGGACACTGTAACACCATCGCACTTCAAGCCTACTCTCCTACACTGCTGTACAC
TCCCCGCTGTTTCATCCGTTCGCATTCTTCGCGTTCTTCGCGGTGACGCGTTTACATTAGCTGCA
TACACACCACCACCTCCACCATGGGCTACCTAGCCGGCCTTGAGGCCGAGTGGCCGGACATTCAG
CGCCAGTGCGGGATACTAGACCCTCCTGGACACCCCTCAGCGCGA
Right flanking sequence: Indices 99076 -- 99575
CGCTTCACGCCATGTTTCGTTCGCGGAAGAAACCAAACCCAATGCCACCACCCAGGTCCAGCGCC
TACGGGCTGCGCTCGTGTGCAAGGACAGCGAGCTAGCGGTGAAATACCGCGAGGTGGCCACGAAA
CAGGTGGTCATTGACCACCAGATCGAGTCCCTTTCGAGAAAGGACCGCGAGATCGCCGAGCTCCG
CCAGGCGCTAGCAGCAGAAAGAGAAGCACATGCCCGTCTGCGGGCCAAGTATGAGCGCGAGAAGG
TGCTGTGGCACGACCAGAGCCAGATGCGTGACGCCGAGATGAAACGATTGAAGAAGGAGTTGATG
GGTGCGTTCAGAAAGGCTACGGCACCGGAGGAAACGGTTCCCCGACGACGAGTGAGCCCAGGGCT
GGTCCCGGGGCTGGTCCCGGGGCTGTCTGAGGATACCGTGGACACCGCGTTTCTCATGCGGTTTG
CCGATGAGACCGAGCCAATGACCCAGGTTGAGAAGCCAACGAGTA
Found at i:99478 original size:12 final size:12
Alignment explanation
Indices: 99461--99490 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
99451 AGTGAGCCCA
99461 GGGCTGGTCCCG
1 GGGCTGGTCCCG
99473 GGGCTGGTCCCG
1 GGGCTGGTCCCG
99485 GGGCTG
1 GGGCTG
99491 TCTGAGGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.30, G:0.53, T:0.17
Consensus pattern (12 bp):
GGGCTGGTCCCG
Left flanking sequence: Indices 98961 -- 99460
GCTACCTAGCCGGCCTTGAGGCCGAGTGGCCGGACATTCAGCGCCAGTGCGGGATACTAGACCCT
CCTGGACACCCCTCAGCGCGAAAACCAGCGCCGAAACCAGCGCCGAAACCCGCTTCACGCCATGT
TTCGTTCGCGGAAGAAACCAAACCCAATGCCACCACCCAGGTCCAGCGCCTACGGGCTGCGCTCG
TGTGCAAGGACAGCGAGCTAGCGGTGAAATACCGCGAGGTGGCCACGAAACAGGTGGTCATTGAC
CACCAGATCGAGTCCCTTTCGAGAAAGGACCGCGAGATCGCCGAGCTCCGCCAGGCGCTAGCAGC
AGAAAGAGAAGCACATGCCCGTCTGCGGGCCAAGTATGAGCGCGAGAAGGTGCTGTGGCACGACC
AGAGCCAGATGCGTGACGCCGAGATGAAACGATTGAAGAAGGAGTTGATGGGTGCGTTCAGAAAG
GCTACGGCACCGGAGGAAACGGTTCCCCGACGACGAGTGAGCCCA
Right flanking sequence: Indices 99491 -- 99990
TCTGAGGATACCGTGGACACCGCGTTTCTCATGCGGTTTGCCGATGAGACCGAGCCAATGACCCA
GGTTGAGAAGCCAACGAGTATAAAACGAAGGTGCGAGGCTGGGGTCCAGGCGGTTCCAGCGGTGG
CGGTGGCTATCCAGGCAACTCCCGTGGTAGAGCCCCGCGAGCAGTTTGGCTCCGCTGGTGTTGGC
TACGACACCCTCCATGCGGCTGCGATGAGCGACTACGGGTTCAGCGACGAAGAGGCTCAGCCAAA
TCGAGAGGAGACGAGTACCCCTGCCATGACCCTGACCCCATGCACCAGTCGTGTACAAGGACCCA
TTCTTAAGGGAGTTTCTTCGGCGGACTACGACCACGCGACGTTTGACGACACCGAGGAGCTCGCG
CGAATGGGCGGGGAGTTTATGGACGCTGACGAGAGCAGCCACTTGCATCTGGGGCTCATGACCCC
TCCGTCCTCGCGGACATAGCATAGTAATAGATATGAGCATTTAGG
Found at i:106989 original size:12 final size:12
Alignment explanation
Indices: 106972--106996 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
106962 GCTTATATCG
106972 CACCACGACCAC
1 CACCACGACCAC
106984 CACCACGACCAC
1 CACCACGACCAC
106996 C
1 C
106997 GGCTTTTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.60, G:0.08, T:0.00
Consensus pattern (12 bp):
CACCACGACCAC
Left flanking sequence: Indices 106472 -- 106971
TCGCAAAGAGGAATTAGGTTGGCGACTGGGGCTTGGCTGCTCAGGGTCGTGGTGGTTGGGTGGCA
AGGGATGGTAAGGAGAGGGCAACGGGTGGGTCGACCTAATGTCGTGGGGTGATACCGTGGTTCCG
AGTACGCCCTACACGGTTGTCCTTGGACGTATTCTTCTTGCAATGCTCCGCTTACCCTCGTCACT
CATTTCCTATCGTCCTTTTTGTCACTGCTCACTTGCTTTCTCCGACTCTTTCCACCTATATACGC
CCCCTTCTCCCTCTGTTCTTATTTCCGCTTTCGATTTTTCGCCGTCGTAGGGTGCGCAATCGGGA
CGGTGACGAGCCTAATTAGCCGTCCACCCCCTCTTCACCCACACACTATAAACGGGCCAATCCTA
GACACCCCGCCAGTAGCGCTACGCCCGCCCGTAACACCGACCTGCCGCTACGGCTCCACAAACTC
CTCTCGTACCACTCGCCAGATAAGCGACCTTGCTTGCTTATATCG
Right flanking sequence: Indices 106997 -- 107496
GGCTTTTCCCGAGGAGTCACCGCTGACTCGTGAGTCGCCCACCCGTCGCGGTGGTGTCCCGTGTT
TACCCTGTGGTCGCGGTGGTGAATGCCCGGAGCACTGCTTCGGACGTACAACCCCGCTGCCATCG
ATCTCGTTCGTTGCGCCGGGATGCTGCATGGCTCGGGACATTGCTAAATGGCGGAGGGGCCGCCA
GACACCGCTAAAAGGACAACAGACAACACCGTAGACACCGTAGAGCCTCTGCCACCCCAAAATAC
CCGCCACGGGCCCTCAATTTCCCGCGGCAGCGCTGCGGTAGTTAACCTCCTCCAGGGCAAGTGGG
GTACATACATTGTCGCGCGCCGCCGTTGGTTTCTCCGGGACCAGGCGAAACTCGTTGAGAGAGCC
CAAAAGCGGGCAAAACAACGCTGCCGGAGGAAACTACGCCCCCGTTTACCCCAGACCCGCTACCT
TTTTGGCCCAATTTCCCCCGGCAACGCCACCTCCCACCCGATCCC
Found at i:108064 original size:21 final size:21
Alignment explanation
Indices: 108040--108089 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
108030 GCTTCCGAGG
108040 CCAAGGAGGAGAAGGAGGAGC
1 CCAAGGAGGAGAAGGAGGAGC
***
108061 CCAAGGAGTCTAAGGAGGAGC
1 CCAAGGAGGAGAAGGAGGAGC
*
108082 CTAAGGAG
1 CCAAGGAG
108090 TCCAAGCTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.42, T:0.06
Consensus pattern (21 bp):
CCAAGGAGGAGAAGGAGGAGC
Left flanking sequence: Indices 107540 -- 108039
TCCGACAAGAGGGGATTTTCATATATATACTCTATACACTCGCCTTCTCAAGCCCACCGTTGACA
TGCTTAGAGTTATCCGTCCAACCCACATGGCGGCCTCGCGCCAATTGCTCCCCCGGCTTGCCGTT
GCGCCGTCGTTGCGGTTGATGGCCATGCGTGGCTACGCCGACTGGCCCGAGCACCAGATCATCAA
CATGCCCGCGTTGTCGCCCACCATGACCCAGGGTGGCATTGCCCTGTGGCTGGTGGGTGCCGGCG
ACACCCTCGAGCCCGGCCAGCTGATTGCTGAGATCGAAACCGACAAGGCTACCATGGACTTTGAG
TTCCAGGAGGACGGGTACATGGCCAAGATCTTGCTTGGTGACGGGTCCAAGGACATTCCTGTGGG
CAAGCCCATTGCCGTGTACGTGGAGAACAAGGACGACGTGGCGGCTTTCGAGAACTTCAAGCCCG
AGGACGCCGCGCTGGCTGACCAGTCGCTGTCGGGCGCTTCCGAGG
Right flanking sequence: Indices 108090 -- 108589
TCCAAGCTGGAGCCCAAGGAGGCCAAGCAAGGCAAGAAGTCGCTGAAGAAGCCCGAGTTGGCCCT
GGGCGACCGCATCCGCGCCTCGCCGTTGGCCAAGAACATTGCTCTCGAGAAGGGCATTGCCTTGG
CTGGCGTCAAGGGCTCTGGTCCCAACGGGCGCATTCTCGCCAAGGACTTGGAGGGCAAGGCCCCC
GCGGCCGCGTCCGGTGGCGCTGCTGCTGCTCCCGCGGCGGCTCCCGCTGGCGCTGCTTACGAGGA
CATCCCCCTCACCCTGATGCGCAAGACCATTGCCTCGCGGTTGTTGGCGCTGACCCAGCAGCTGC
CCACCTACATTGTGCTGCTGACTTTGCTGGTGCTGAAGCTCTTGAAGTTGCGGGCGCTGCTCAAC
GCGCTGGCGGGCGACCGCTACAAGTTGTCGGTGAACGACTTGCTCATCAAGGCGTTGGCCATCAC
TGCCAAGCGGGTGCCCGACGTGAACGCGCTGTGGTTGGGTGACCA
Found at i:108090 original size:21 final size:21
Alignment explanation
Indices: 108051--108116 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
108041 CAAGGAGGAG
*
108051 AAGGAGGAGCCCAAGGAGTCT
1 AAGGAGGAGCCCAAGGAGTCC
*
108072 AAGGAGGAGCCTAAGGAGTCC
1 AAGGAGGAGCCCAAGGAGTCC
** *
108093 AAGCTGGAGCCCAAGGAGGCC
1 AAGGAGGAGCCCAAGGAGTCC
108114 AAG
1 AAG
108117 CAAGGCAAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.33, C:0.21, G:0.38, T:0.08
Consensus pattern (21 bp):
AAGGAGGAGCCCAAGGAGTCC
Left flanking sequence: Indices 107551 -- 108050
GGGATTTTCATATATATACTCTATACACTCGCCTTCTCAAGCCCACCGTTGACATGCTTAGAGTT
ATCCGTCCAACCCACATGGCGGCCTCGCGCCAATTGCTCCCCCGGCTTGCCGTTGCGCCGTCGTT
GCGGTTGATGGCCATGCGTGGCTACGCCGACTGGCCCGAGCACCAGATCATCAACATGCCCGCGT
TGTCGCCCACCATGACCCAGGGTGGCATTGCCCTGTGGCTGGTGGGTGCCGGCGACACCCTCGAG
CCCGGCCAGCTGATTGCTGAGATCGAAACCGACAAGGCTACCATGGACTTTGAGTTCCAGGAGGA
CGGGTACATGGCCAAGATCTTGCTTGGTGACGGGTCCAAGGACATTCCTGTGGGCAAGCCCATTG
CCGTGTACGTGGAGAACAAGGACGACGTGGCGGCTTTCGAGAACTTCAAGCCCGAGGACGCCGCG
CTGGCTGACCAGTCGCTGTCGGGCGCTTCCGAGGCCAAGGAGGAG
Right flanking sequence: Indices 108117 -- 108616
CAAGGCAAGAAGTCGCTGAAGAAGCCCGAGTTGGCCCTGGGCGACCGCATCCGCGCCTCGCCGTT
GGCCAAGAACATTGCTCTCGAGAAGGGCATTGCCTTGGCTGGCGTCAAGGGCTCTGGTCCCAACG
GGCGCATTCTCGCCAAGGACTTGGAGGGCAAGGCCCCCGCGGCCGCGTCCGGTGGCGCTGCTGCT
GCTCCCGCGGCGGCTCCCGCTGGCGCTGCTTACGAGGACATCCCCCTCACCCTGATGCGCAAGAC
CATTGCCTCGCGGTTGTTGGCGCTGACCCAGCAGCTGCCCACCTACATTGTGCTGCTGACTTTGC
TGGTGCTGAAGCTCTTGAAGTTGCGGGCGCTGCTCAACGCGCTGGCGGGCGACCGCTACAAGTTG
TCGGTGAACGACTTGCTCATCAAGGCGTTGGCCATCACTGCCAAGCGGGTGCCCGACGTGAACGC
GCTGTGGTTGGGTGACCAGGGCGTCATCCGCAAGTACTCCAACGT
Found at i:111150 original size:12 final size:12
Alignment explanation
Indices: 111133--111160 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
111123 GCGGCGCTGG
111133 CCTCCTCGTCCT
1 CCTCCTCGTCCT
111145 CCTCCTCGTCCT
1 CCTCCTCGTCCT
111157 CCTC
1 CCTC
111161 GTCGGCAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.61, G:0.07, T:0.32
Consensus pattern (12 bp):
CCTCCTCGTCCT
Left flanking sequence: Indices 110633 -- 111132
CTCGGGCTCAAACGCTGGCGGGTCCTCGGGCATGTGGAATGGCGTCAGCGCAAACGGTACCGTCT
CGTTGGCCGCGGCCTCGATCTTGTTCGAGAACTCCAGCAAAATGCCCTTGGCCTGCGAGAAATCG
TCGATGGCCAGCTGGAACTGCTTGAACAGCGGACAGAGCCCCAACCCGTCCAAGTCGTCGTCGCG
GAACACGATGCTTTCGAGCTTACCAAAGTTGATGGGCTCTGCGGGCTCCGCCATGTCCACGTCCT
CGGACGCGGGCTCGTCCAGCGCCAGGGTCGCGGCAAACACCACCCGCCCGCTCTTGTCGGTGGAG
AGCGTGTTGAGCAAGAGCGATTTCGCGCCGCCCTCGTCGAACTCCGCGAGGGCCTTTTTGAAAAG
CGGGTCGATCAGCAACTCCTGCTCGAGTTTCTTGATGCGGATGGTGTCGAACTTGACGAGCGTCG
AGTCCACCACCTTGTTGAGCACCCGCTTGCGCTTGGCGGCGCTGG
Right flanking sequence: Indices 111161 -- 111660
GTCGGCAGCCTCGACGTCTCCTTCGCGCTTGTTGGCCAACCCGCTCAACAACTTGCCGGTCTCGT
GCGCCGCCAGCTCCACCCGACTCAGGTAGATCTTCATGCACCCGTCCAACGTGGCACTGGCCTTC
TGGAAGTTGACACCGGACCCCTCCATGATCACGTTCATGTCGTTGAAATACTCGATCAACCCCAC
GTTCCACGTGTTCTTCAGGTTGATCTTGTTGTCCGTCGCCAACCGGATCCACTCCTCGAAGTTGT
TGAGGATCACGTTCCGGTTCTCGTTGAAGTGGATGTTGCCGTCAAACAGCTCGTCGTAGTCGTCG
TTGGTGATGATCAGCGCCACTCGCCGCAGCAGCAGCATCAGCGGCCCGGGAATGCCTCCGCTGGC
GCCCACAAGCCCCATGCGGTGGCCCTGGCTCACCAGCAGAAGCACCCGTTTGCCCTGGGCCAGCA
GCAGCAGCCGCAGCCCGTGGCCCAGGCGGGAACCCATCCCCAGCA
Found at i:111933 original size:18 final size:18
Alignment explanation
Indices: 111908--111955 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
111898 TGTGATTGAA
*
111908 GCCACCAGCCAGATCAAT
1 GCCACCAGCCAGATCAAC
*
111926 GGCACCAGCCAGATCAAC
1 GCCACCAGCCAGATCAAC
111944 GCCACCAGCCAG
1 GCCACCAGCCAG
111956 GCCACGAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.31, C:0.42, G:0.21, T:0.06
Consensus pattern (18 bp):
GCCACCAGCCAGATCAAC
Left flanking sequence: Indices 111408 -- 111907
TCCTCGAAGTTGTTGAGGATCACGTTCCGGTTCTCGTTGAAGTGGATGTTGCCGTCAAACAGCTC
GTCGTAGTCGTCGTTGGTGATGATCAGCGCCACTCGCCGCAGCAGCAGCATCAGCGGCCCGGGAA
TGCCTCCGCTGGCGCCCACAAGCCCCATGCGGTGGCCCTGGCTCACCAGCAGAAGCACCCGTTTG
CCCTGGGCCAGCAGCAGCAGCCGCAGCCCGTGGCCCAGGCGGGAACCCATCCCCAGCAGCACCCG
CTGCGCCTGGGGTGTCACTGGTGGGTGTGTATGAGGCGGAGCCGCGTTTCCTCGTCGTTTGGGGA
GGACGTTCATGGGGTGGTACCGTGATCTGAAGGAAAACAAACAGACGCGGGATGGTACTGCATGG
TAGCGCGGAAGGGAGAAGAGATAAGACAAAGGAGGGAAAGATGAGGATGGGTTTGTGGACTACAC
TGTTGTGGGCCTGGTGGTGTATTCGCTGTAGTGTTTGTGATTGAA
Right flanking sequence: Indices 111956 -- 112455
GCCACGAGCCGCATCTTTGATGGTGAGCCCACAGACCCTGTTAAAGTTGCAAAAATGAATGCAGT
CGGCGTCACAGTGGACTGAGTGTCTGGTCATAGGGACAGCCAGTGCGTAAGCTGCCGGAAACAGC
CCTGGCAAAGCCTTGGCCTCCCACTTTGGCACACTATACGATCAGTAGCACCTGTTCCAGCGAAA
CCTTAAATAAGCTTCGGAGGTGCATTGCAGCCACCACTGGCTTGGCTGGTGGGCCATCGCCCGAT
TTTAGGTTAGTATCCGAGGGTAGTACGCCCAGTCACCTGGCTTGGGGCCTCCTTGAGTGTGATTG
TTTCGGAACCATTTACTTGATTACGAAAAATACCCCGCCAGCAGATCGTTCCGTCCACACTGCCT
GGTGTCGGAGCACTGCGGATACCCCCGTCACTTCTGGCAATGGTGTGGTTACCCATAGCCGAAAC
AAGACAATTGAATTAGATCGAGCAGGATGCGTCATCGGTGGCGGG
Found at i:117612 original size:17 final size:17
Alignment explanation
Indices: 117590--117622 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
117580 CTTGCGAGTC
117590 TACTAGCCACGCAATTT
1 TACTAGCCACGCAATTT
117607 TACTAGCCACGCAATT
1 TACTAGCCACGCAATT
117623 CCACATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.27
Consensus pattern (17 bp):
TACTAGCCACGCAATTT
Left flanking sequence: Indices 117090 -- 117589
AATTCCTTTCACTTTTGTTGGGTGTTCTGTTGCTTTTTGCAAAGTTTCATTGTCTCTCGAAACAT
TTACGGTATAGAACATCGATAGTTGGCATTTAGTTGGATTTACGTCAATGTTACGATCTCTGGTG
GTTGCAAAATCCTGTACAAACTTTGACGTGGTTGCAAAACCTTAGCCAAAACTTGAAAAATTCAG
ATTGATGATACAAAGAACTCTGTGGAAACCTTGAGTACGTAGAGGCATGGTGACAGTACGTATGA
CTGGTGTCGGGGCACCGCAGACGTGGACTTTAATATCCATAATCGACCCAGATGCAGCGAAGAAC
CCTGCCTAATGCAATGTCCCGTGGACGCCAGAGATTCGTATGGCTTGCGATGGCCCGTAAATGCT
GCCAGTTATTTTGTTCAAAGCCAAGGGTCTTCAGAAGCCCGTCATGCAACACTTCATTGCATGCT
ATCTGGCAGAATCCCGGTTTGCAGCTTGCACAATGCTTGCGAGTC
Right flanking sequence: Indices 117623 -- 118122
CCACATATTTTGTCACTGCGTCCGCCCACTCGTATCATCAGCTAGTACCCATGCACGCCGTAAAA
GCAGTCGAGTGGTGGACCCCGTAATCGATATTTTTAGACCCCAGATGGGGCGATTCCCATTGTAG
CCGAATCCAGACCCCGCGTAGCAAGCGACCCCCGTATCTGGCAGTTTCTGTGGGTCAACCCTGGT
GGCTTGGTTATTTTACCACCGCTGCACGATAATTTTCTACGAACTCAGGGAAGGTCCGGGGATGA
CGCGGAGGGACGCACAGTCAGTCAGACCATTCTCGAGGTTGCTTGTGCGTCTGATAGACGAGCAA
CGAGGCGTCTTCGTTTTGTGTCCAGTAATTTTCTCGGCCTCGTGTTTGTGGCACTTTGCGTGGGC
AGTTTACGTCGGCAGGTCGATCCAGGCGGTACGATTAGCGCATCGGTACCCGCCTCTACCTACCG
CTGTCGGCTCCGTCGCTATTGTTCGATCTTGTGGCCGCGCTGGGG
Done.