sallet_2.scaffold.fasta.s71.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold89
Parameters: 2 7 7 80 10 50 500
Length:  101795

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085--1148	14	4.5	15	88	7	82	1	53	7	37	1.40
1109--1148	15	2.7	15	88	3	55	2	57	7	32	1.40
1336--1370	9	3.8	9	92	7	61	0	57	8	34	1.29
1377--1431	24	2.3	23	76	14	58	1	50	9	38	1.45
1598--1641	11	4.0	11	93	0	79	29	45	15	9	1.77
4122--4182	18	3.4	18	90	2	97	14	19	29	36	1.92
4553--4866	91	3.5	88	79	12	286	22	15	22	38	1.92
6821--6862	21	2.0	21	86	9	59	30	30	21	16	1.95
6829--6874	11	4.4	11	86	8	69	28	26	23	21	1.99
6872--6977	26	3.9	27	85	8	128	33	31	23	11	1.90
6872--6977	40	2.6	41	85	11	132	33	31	23	11	1.90
6872--6977	14	7.8	13	83	12	117	33	31	23	11	1.90
7104--7148	10	4.5	10	82	0	63	11	64	0	24	1.26
7095--7138	20	2.2	20	96	4	81	13	65	0	20	1.26
12408--12438	15	2.1	15	100	0	62	32	25	29	12	1.93
13161--13206	16	2.9	16	83	0	56	32	56	10	0	1.34
15439--15464	13	2.0	13	100	0	52	15	30	15	38	1.88
15607--15631	6	4.2	6	100	0	50	36	16	0	48	1.46
18354--18385	12	2.5	13	95	5	57	50	9	40	0	1.35
18707--18733	12	2.2	12	100	0	54	0	22	55	22	1.44
18986--19018	12	2.8	12	95	0	57	12	30	24	33	1.91
19014--19080	12	5.8	12	81	10	68	5	38	28	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20290--20369	11	7.3	11	85	4	74	1	7	57	33	1.35
20284--20367	12	7.5	12	84	6	81	2	7	55	34	1.40
23306--23344	6	6.5	6	88	11	62	48	0	51	0	1.00
23306--23374	24	2.9	23	84	4	75	42	4	52	1	1.30
23311--23345	18	1.9	18	100	0	70	48	0	51	0	1.00
23331--23404	18	4.1	18	77	7	69	36	10	51	1	1.46
23348--23409	30	2.1	30	96	0	115	38	14	46	0	1.45
23372--23409	18	2.1	18	100	0	76	39	15	44	0	1.47
23360--23392	12	2.8	12	100	0	66	36	15	48	0	1.45
24040--24086	25	2.0	24	88	12	71	34	0	44	21	1.52
25273--25347	34	2.2	35	90	2	116	21	21	21	36	1.96
28682--28754	14	5.3	14	93	3	130	52	8	34	5	1.55
28673--28754	42	2.0	42	90	4	130	51	8	32	7	1.60
28763--28838	16	4.8	16	88	3	100	51	6	23	18	1.69
28763--28838	31	2.4	32	86	2	100	51	6	23	18	1.69
29331--29378	15	3.2	15	93	0	78	18	37	29	14	1.91
30052--30081	14	2.1	15	93	6	53	0	26	26	46	1.53
30240--30280	11	3.8	11	93	3	66	19	60	0	19	1.36
30240--30280	21	1.9	21	90	5	64	19	60	0	19	1.36
30718--30758	12	3.7	12	78	18	52	21	43	34	0	1.53
30717--30761	21	2.1	21	95	0	81	20	44	35	0	1.51
30781--30851	21	3.4	21	94	0	115	23	49	22	4	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33561--33659	20	4.8	20	88	3	144	21	20	44	14	1.86
34931--34963	8	4.1	8	92	0	57	0	0	66	33	0.92
34999--35045	19	2.5	19	96	0	85	29	10	36	23	1.89
35063--35176	16	7.5	15	73	12	63	11	14	38	35	1.83
35104--35160	15	3.7	15	78	2	60	12	14	36	36	1.83
35141--35179	16	2.4	16	95	0	69	12	17	38	30	1.88
35286--35339	16	3.4	16	89	0	81	31	46	5	16	1.70
35352--35417	12	5.5	12	90	0	105	33	54	0	12	1.37
35502--35530	15	1.9	15	100	0	58	31	48	6	13	1.69
36408--36470	12	4.9	13	73	21	53	22	60	14	3	1.48
36408--36461	28	1.9	28	92	7	92	22	61	14	1	1.43
38106--38175	20	3.5	20	98	0	131	15	30	42	11	1.82
38106--38175	10	7.0	10	88	0	104	15	30	42	11	1.82
39107--39145	4	9.5	4	89	10	53	0	28	0	71	0.86
39098--39147	21	2.3	20	83	12	64	0	30	0	70	0.88
42242--42313	21	3.2	21	83	14	99	18	19	41	20	1.90
56760--56873	59	1.9	59	92	3	194	38	19	18	23	1.93
68318--68372	28	2.0	28	92	0	92	27	18	29	25	1.98
80346--80526	54	3.4	54	92	0	299	16	29	23	30	1.96
81259--81294	15	2.4	15	95	0	63	41	50	8	0	1.33
81413--81549	33	4.2	33	94	0	220	21	37	19	21	1.94
83504--83553	18	2.8	18	85	11	75	14	22	14	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85293--85360	18	3.8	18	94	0	91	30	29	27	11	1.92
90227--90272	22	2.0	23	91	4	76	8	19	28	43	1.80

Tables:   1

The End!