Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold89
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 101795
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1129 original size:15 final size:15
Alignment explanation
Indices: 1085--1148 Score: 82
Period size: 14 Copynumber: 4.5 Consensus size: 15
1075 TCTACCCCAC
1085 CCGT-CCTTTTCCCT
1 CCGTCCCTTTTCCCT
1099 CCGT-CCTTTT-CCT
1 CCGTCCCTTTTCCCT
1112 CCGTCCCTTTTCCCT
1 CCGTCCCTTTTCCCT
**
1127 CCGTCCCTTACCCCT
1 CCGTCCCTTTTCCCT
1142 -CGTCCCT
1 CCGTCCCT
1149 CTACACCCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.15
14 23 0.50
15 16 0.35
ACGTcount: A:0.02, C:0.53, G:0.08, T:0.38
Consensus pattern (15 bp):
CCGTCCCTTTTCCCT
Left flanking sequence: Indices 585 -- 1084
AGTGTGTTATCATTACGTAAGCCACTGTATAAGCGTGGACCAGGCAATCACCACCGGGTCACCGC
TTTCACGCAATTGGCAATGACAACAAGGGTCTAAGGTCACCACACCAACGATAGCTCACACTACA
ACGCCTGCCATACTACAACGCCCTCACTACAACGCCTGCCTCGTCGGTCGCGGCTGGGACGGCCA
CAAAACCACCCCGAGAACGTGAAATTGACAGTGACCGCCCGCCCAGACCGTACAAGCCGGTGCTT
GGGCCACACTAGCTGAGCCAACACCCAGACGCCCAAACCGTCTACTCCAACCACACCACCTATCC
ATATAATCCCTCGCATGTCTACCCCACTCAGATCTCGCTATATGCGATCGAGATGGATCCTAAGG
GATCGTCCCCATCAACAACCCACCACCTTGAACCTTCTCTAGCCACCGTTCTTTAGCCACCCCCC
GTAGCTACTCTCCTCGTCTCCGTAGCCACCCCGTGTCTACCCCAC
Right flanking sequence: Indices 1149 -- 1648
CTACACCCACATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTT
CGGAGTCAATCGCCGACACGTCGCAGCGCCACCCAACGGCTCACACAAGGCCACCAGAGCACACC
GTCTCCACAGTGTCGCGACCACCACACCTTCCGCTATTCCTCCATTCCTCCTCCACTCCTCCTTC
GCCTCCTCTCGCCTCCTTCGCCTCCTTTTCCCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTC
GCCTTCTCCGCCGCACCTTCCTTTCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAG
TACCCCGGCGACAGGTCTGTACCCCAGCGACAGGTACGCGAGCCACACCGACAGCTACACCAACA
GCTAAACCAACAAGTATACAGAATCCCGCAAAAACAACCTAAAAAGCGTAACACTCCTCCCACGG
CCAATCCACGGCCAATCCACAGCCAATCCACGGCCAATTCCCAGC
Found at i:1147 original size:14 final size:15
Alignment explanation
Indices: 1109--1148 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
1099 CCGTCCTTTT
**
1109 CCTCCGTCCCTTTTC
1 CCTCCGTCCCTTACC
1124 CCTCCGTCCCTTACC
1 CCTCCGTCCCTTACC
1139 CCT-CGTCCCT
1 CCTCCGTCCCT
1149 CTACACCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.03, C:0.57, G:0.07, T:0.33
Consensus pattern (15 bp):
CCTCCGTCCCTTACC
Left flanking sequence: Indices 609 -- 1108
CTGTATAAGCGTGGACCAGGCAATCACCACCGGGTCACCGCTTTCACGCAATTGGCAATGACAAC
AAGGGTCTAAGGTCACCACACCAACGATAGCTCACACTACAACGCCTGCCATACTACAACGCCCT
CACTACAACGCCTGCCTCGTCGGTCGCGGCTGGGACGGCCACAAAACCACCCCGAGAACGTGAAA
TTGACAGTGACCGCCCGCCCAGACCGTACAAGCCGGTGCTTGGGCCACACTAGCTGAGCCAACAC
CCAGACGCCCAAACCGTCTACTCCAACCACACCACCTATCCATATAATCCCTCGCATGTCTACCC
CACTCAGATCTCGCTATATGCGATCGAGATGGATCCTAAGGGATCGTCCCCATCAACAACCCACC
ACCTTGAACCTTCTCTAGCCACCGTTCTTTAGCCACCCCCCGTAGCTACTCTCCTCGTCTCCGTA
GCCACCCCGTGTCTACCCCACCCGTCCTTTTCCCTCCGTCCTTTT
Right flanking sequence: Indices 1149 -- 1648
CTACACCCACATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTT
CGGAGTCAATCGCCGACACGTCGCAGCGCCACCCAACGGCTCACACAAGGCCACCAGAGCACACC
GTCTCCACAGTGTCGCGACCACCACACCTTCCGCTATTCCTCCATTCCTCCTCCACTCCTCCTTC
GCCTCCTCTCGCCTCCTTCGCCTCCTTTTCCCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTC
GCCTTCTCCGCCGCACCTTCCTTTCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAG
TACCCCGGCGACAGGTCTGTACCCCAGCGACAGGTACGCGAGCCACACCGACAGCTACACCAACA
GCTAAACCAACAAGTATACAGAATCCCGCAAAAACAACCTAAAAAGCGTAACACTCCTCCCACGG
CCAATCCACGGCCAATCCACAGCCAATCCACGGCCAATTCCCAGC
Found at i:1350 original size:9 final size:9
Alignment explanation
Indices: 1336--1370 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
1326 CTCCTCCACT
1336 CCTCCTTCG
1 CCTCCTTCG
1345 CCTCCTCTCG
1 CCTCCT-TCG
1355 CCTCCTTCG
1 CCTCCTTCG
1364 CCTCCTT
1 CCTCCTT
1371 TTCCCGCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.00, C:0.57, G:0.09, T:0.34
Consensus pattern (9 bp):
CCTCCTTCG
Left flanking sequence: Indices 836 -- 1335
CCGGTGCTTGGGCCACACTAGCTGAGCCAACACCCAGACGCCCAAACCGTCTACTCCAACCACAC
CACCTATCCATATAATCCCTCGCATGTCTACCCCACTCAGATCTCGCTATATGCGATCGAGATGG
ATCCTAAGGGATCGTCCCCATCAACAACCCACCACCTTGAACCTTCTCTAGCCACCGTTCTTTAG
CCACCCCCCGTAGCTACTCTCCTCGTCTCCGTAGCCACCCCGTGTCTACCCCACCCGTCCTTTTC
CCTCCGTCCTTTTCCTCCGTCCCTTTTCCCTCCGTCCCTTACCCCTCGTCCCTCTACACCCACAT
GGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTTCGGAGTCAATCG
CCGACACGTCGCAGCGCCACCCAACGGCTCACACAAGGCCACCAGAGCACACCGTCTCCACAGTG
TCGCGACCACCACACCTTCCGCTATTCCTCCATTCCTCCTCCACT
Right flanking sequence: Indices 1371 -- 1870
TTCCCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTCGCCTTCTCCGCCGCACCTTCCTTTCTC
GGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGCGACAGGTCTGTACCCCAG
CGACAGGTACGCGAGCCACACCGACAGCTACACCAACAGCTAAACCAACAAGTATACAGAATCCC
GCAAAAACAACCTAAAAAGCGTAACACTCCTCCCACGGCCAATCCACGGCCAATCCACAGCCAAT
CCACGGCCAATTCCCAGCTCACTGTTTTTCCACCTTTTCTGGTTAATTCCGGATCATATGCACTT
TGAATTGCGGGGTCGCCACGCACTTAAATAGTCCGAGGCTCCACCACCACCACCCAACCAGTCGT
CCACCACCAGCCACCTCTTCATCCACCATGGCTGACCTCACCGTCGACGACTACCACCTCGACGT
GTACATGCGGTTCGCCGACGGGCTCATCCACGAGGTGAGTGCCGA
Found at i:1430 original size:24 final size:23
Alignment explanation
Indices: 1377--1431 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
1367 CCTTTTCCCG
*
1377 CTTCCTTCTCCTTCTCTCGCGCC
1 CTTCCTTCGCCTTCTCTCGCGCC
*
1400 TTCTCCTTCGCCTTCTC-CGCCGCAC
1 CT-TCCTTCGCCTTCTCTCG-CGC-C
1425 CTTCCTT
1 CTTCCTT
1432 TCTCGGACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.12
24 21 0.81
25 2 0.08
ACGTcount: A:0.02, C:0.51, G:0.09, T:0.38
Consensus pattern (23 bp):
CTTCCTTCGCCTTCTCTCGCGCC
Left flanking sequence: Indices 877 -- 1376
CCAAACCGTCTACTCCAACCACACCACCTATCCATATAATCCCTCGCATGTCTACCCCACTCAGA
TCTCGCTATATGCGATCGAGATGGATCCTAAGGGATCGTCCCCATCAACAACCCACCACCTTGAA
CCTTCTCTAGCCACCGTTCTTTAGCCACCCCCCGTAGCTACTCTCCTCGTCTCCGTAGCCACCCC
GTGTCTACCCCACCCGTCCTTTTCCCTCCGTCCTTTTCCTCCGTCCCTTTTCCCTCCGTCCCTTA
CCCCTCGTCCCTCTACACCCACATGGCCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCC
CGCGCCGGGCTTCGGAGTCAATCGCCGACACGTCGCAGCGCCACCCAACGGCTCACACAAGGCCA
CCAGAGCACACCGTCTCCACAGTGTCGCGACCACCACACCTTCCGCTATTCCTCCATTCCTCCTC
CACTCCTCCTTCGCCTCCTCTCGCCTCCTTCGCCTCCTTTTCCCG
Right flanking sequence: Indices 1432 -- 1931
TCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGCGACAGGTCTGTACC
CCAGCGACAGGTACGCGAGCCACACCGACAGCTACACCAACAGCTAAACCAACAAGTATACAGAA
TCCCGCAAAAACAACCTAAAAAGCGTAACACTCCTCCCACGGCCAATCCACGGCCAATCCACAGC
CAATCCACGGCCAATTCCCAGCTCACTGTTTTTCCACCTTTTCTGGTTAATTCCGGATCATATGC
ACTTTGAATTGCGGGGTCGCCACGCACTTAAATAGTCCGAGGCTCCACCACCACCACCCAACCAG
TCGTCCACCACCAGCCACCTCTTCATCCACCATGGCTGACCTCACCGTCGACGACTACCACCTCG
ACGTGTACATGCGGTTCGCCGACGGGCTCATCCACGAGGTGAGTGCCGAGCAGATCCGCCCGCAC
TTGGACCCGGGCTTCCCCCAGGACCGCCTCGACGAGTACTTGCAG
Found at i:1614 original size:11 final size:11
Alignment explanation
Indices: 1598--1641 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
1588 AACACTCCTC
1598 CCACGGCCAAT
1 CCACGGCCAAT
1609 CCACGGCCAAT
1 CCACGGCCAAT
*
1620 CCACAGCCAAT
1 CCACGGCCAAT
1631 CCACGGCCAAT
1 CCACGGCCAAT
1642 TCCCAGCTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.30, C:0.45, G:0.16, T:0.09
Consensus pattern (11 bp):
CCACGGCCAAT
Left flanking sequence: Indices 1098 -- 1597
TCCGTCCTTTTCCTCCGTCCCTTTTCCCTCCGTCCCTTACCCCTCGTCCCTCTACACCCACATGG
CCCGTCATCTGCGTCTCCGGCGCGGATCGCCTGCACTCCCGCGCCGGGCTTCGGAGTCAATCGCC
GACACGTCGCAGCGCCACCCAACGGCTCACACAAGGCCACCAGAGCACACCGTCTCCACAGTGTC
GCGACCACCACACCTTCCGCTATTCCTCCATTCCTCCTCCACTCCTCCTTCGCCTCCTCTCGCCT
CCTTCGCCTCCTTTTCCCGCTTCCTTCTCCTTCTCTCGCGCCTTCTCCTTCGCCTTCTCCGCCGC
ACCTTCCTTTCTCGGACACGTCCCGATCGGGAAATAGACGCGACGCACCAGTACCCCGGCGACAG
GTCTGTACCCCAGCGACAGGTACGCGAGCCACACCGACAGCTACACCAACAGCTAAACCAACAAG
TATACAGAATCCCGCAAAAACAACCTAAAAAGCGTAACACTCCTC
Right flanking sequence: Indices 1642 -- 2141
TCCCAGCTCACTGTTTTTCCACCTTTTCTGGTTAATTCCGGATCATATGCACTTTGAATTGCGGG
GTCGCCACGCACTTAAATAGTCCGAGGCTCCACCACCACCACCCAACCAGTCGTCCACCACCAGC
CACCTCTTCATCCACCATGGCTGACCTCACCGTCGACGACTACCACCTCGACGTGTACATGCGGT
TCGCCGACGGGCTCATCCACGAGGTGAGTGCCGAGCAGATCCGCCCGCACTTGGACCCGGGCTTC
CCCCAGGACCGCCTCGACGAGTACTTGCAGACCTACCAGAAGCCGAGCCAGATCCCGGGCTTCCG
CGAGGCGGTCCGTGGCACCATCAACCGCTCCAACGTCAAGCTGATCAAAAACTTCCGGATGATCA
TGGCCATCTTGGACACCCGGGTGACGGCCCCGTTGCTCACCAACCTGCTCCAGTTGGCCCGCGAC
ATGTCCGACACCGAGCGCGAGCAGCTCTTGACCGCGTGGCGGGAC
Found at i:4153 original size:18 final size:18
Alignment explanation
Indices: 4122--4182 Score: 97
Period size: 18 Copynumber: 3.4 Consensus size: 18
4112 TTGTCGTTCT
4122 GCCATGGT-GATTTCTTA
1 GCCATGGTGGATTTCTTA
*
4139 GCCATGGTGGATTTCTTC
1 GCCATGGTGGATTTCTTA
*
4157 GCCATGGTGGATTGCTTA
1 GCCATGGTGGATTTCTTA
4175 GCCATGGT
1 GCCATGGT
4183 ATTTCTCAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 8 0.20
18 32 0.80
ACGTcount: A:0.15, C:0.20, G:0.30, T:0.36
Consensus pattern (18 bp):
GCCATGGTGGATTTCTTA
Left flanking sequence: Indices 3622 -- 4121
AGACCACGGTGGCGCGGATGGAGTTCCGCCCGTGGACGACGCAGTTTGCGCTGGCCCACCAGATG
TCGCTGTGCCGGATGGCGCTGTCGCTGAAGAAGGGGGCGTGTGACACCCGCGGCAAGCTCTGGGA
GTGTAGCAACGTGTGGGTGGCGGACGCGCTGGCGTTGCCCACGGCGCTGGGGGTGAACCCGATGG
TGCTGACGATGGCGGTGGCCCGGCACAACGCGTTGGAGCTTGCGAAGGAGTTGAGACCCGGGCCG
AAGCTTTAGAGAAGGGTGTTTAGAGGTAAAGGTATTAGAGGTAATGTATGGATACGAAGAAGAGA
AGAAGGGGGGTGGGATGTAGAAAGGGGAAGAAGGAAGGTGGGTTGTAGTACAAGGGAAGGGAAGA
AGTAGGTGTTATTAGGGTAGTACAGGGGAAGGAAGTAGTGGTTGTGTTGTGACCCGACACCAGGG
TCAGAAGAGGGGCTGAAGGCACCGTAGGTGAAATTTTGTCGTTCT
Right flanking sequence: Indices 4183 -- 4682
ATTTCTCAGGTCGAAGGGTACAAACTGCGTTATGGAGGTAGATAATGGTTAAGTTTGTAGTTGGC
GTAATTTCAGAGGTGTTTGAGCTTGGGTGTTATTAATCTAGGTTCTGGTTGGACTTAAATATGAC
ACGGCTGGGCTTTTTGCAGCCGCTTATATGCAGGTCGCGTTGGTGGTGGAAACATGGTCCCAACG
TATCGACCTAGGAGGTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTATGA
GTAGAATGGTGTTGTTTTCACGGTATTTGGCCGACTGTAGTGCAAGAAGCAACACACATGTCCAA
TCTAGATGCGAGTCTCAGTAGAATCAATACGCATGTCTCGACTCGTGGTTAGAATCTTGATCAGA
CATTTGGCTAGAATCTTTTGGCATTGGTGGCGGGTTAGAATCCTTTCTGATTGACATTTAGTTAG
TCTTGACCTCGGTTAGAGTCTTAATCCGACATTTGGCTAGAATCT
Found at i:4749 original size:86 final size:88
Alignment explanation
Indices: 4553--4866 Score: 286
Period size: 91 Copynumber: 3.5 Consensus size: 88
4543 TCTCGACTCG
* * *
4553 TGGTTAGAATCTTGATCAGACATTTGGCTAGAATCTTTTGGCATTGGTGGCGGGTTAGAATCCTT
1 TGGTTAGAATCTTAATCCGACATTTGGCTAGAATCTTTTGGCA-T-G-GGC-GGTTA-AA-ACTT
* * *
4618 -TCTGATTGACATTTAGTTAGTCTTG-ACCT
60 CTCTAACTG--ATTTAGTTAGTCTTGAATCT
* * *
4647 CGGTTAGAGTCTTAATCCGACATTTGGCTAGAATCTTTTGGCATCGGTGCAGGGTTAGAA-TT-T
1 TGGTTAGAATCTTAATCCGACATTTGGCTAGAATCTTTTGGCAT-GG-GC--GGTTAAAACTTCT
4710 -T-AC-G-TTTAGTTAGTCTTGAATCT
62 CTAACTGATTTAGTTAGTCTTGAATCT
* * *
4733 TGGTTAGAATCTTAATCTGACATTTGGCTAGAATCCTTTGGCATTGGCGGTTAAAATCTTCTCTA
1 TGGTTAGAATCTTAATCCGACATTTGGCTAGAATCTTTTGGCATGGGCGGTTAAAA-CTTCTCTA
* * *
4798 ACTGACATTTGGTGAGT-TTCGACTCT
65 ACTG--ATTTAGTTAGTCTT-GAATCT
4824 TGGTTAGAATCTTAATCCGACATTTGGCTAGAATCTTTTGGCA
1 TGGTTAGAATCTTAATCCGACATTTGGCTAGAATCTTTTGGCA
4867 ATGGTGTCGT
Statistics
Matches: 187, Mismatches: 20, Indels: 29
0.79 0.08 0.12
Matches are distributed among these distances:
82 7 0.04
84 4 0.02
85 16 0.09
86 44 0.24
87 2 0.01
88 2 0.01
89 1 0.01
90 3 0.02
91 57 0.30
92 1 0.01
93 5 0.03
94 45 0.24
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (88 bp):
TGGTTAGAATCTTAATCCGACATTTGGCTAGAATCTTTTGGCATGGGCGGTTAAAACTTCTCTAA
CTGATTTAGTTAGTCTTGAATCT
Left flanking sequence: Indices 4053 -- 4552
TTGTGTTGTGACCCGACACCAGGGTCAGAAGAGGGGCTGAAGGCACCGTAGGTGAAATTTTGTCG
TTCTGCCATGGTGATTTCTTAGCCATGGTGGATTTCTTCGCCATGGTGGATTGCTTAGCCATGGT
ATTTCTCAGGTCGAAGGGTACAAACTGCGTTATGGAGGTAGATAATGGTTAAGTTTGTAGTTGGC
GTAATTTCAGAGGTGTTTGAGCTTGGGTGTTATTAATCTAGGTTCTGGTTGGACTTAAATATGAC
ACGGCTGGGCTTTTTGCAGCCGCTTATATGCAGGTCGCGTTGGTGGTGGAAACATGGTCCCAACG
TATCGACCTAGGAGGTACTGTGGAATCAACGAAAAATGCTTTTCATGTTATATGGCCTGGTATGA
GTAGAATGGTGTTGTTTTCACGGTATTTGGCCGACTGTAGTGCAAGAAGCAACACACATGTCCAA
TCTAGATGCGAGTCTCAGTAGAATCAATACGCATGTCTCGACTCG
Right flanking sequence: Indices 4867 -- 5366
ATGGTGTCGTGTAGTGCTCCGGTTGAGCAAGGAGTCACCACATCTGGTTGACTCTTGGTTAGAAT
CTTAATCCTACATTTGGCTAGAATCTTTTAGCATTGGCAGGTAGAGCGCTGGTTGCGCAAGGAGT
CACCACCCTCTGTCACCAGAGTCAAACCGCACATACTACCACCCTGTGGATACTCTTTCCCTACT
CTTGTAAACTCTCTCCTAGCATTTTGTGCGCTGTAGGTCTGAGTTAGACGGCCGGTTATGGTTCC
TAACTCTGTCGAACAAGAGGTGGACACAGAAGTCTATCTCTGAACGAGCGTCTTGTTTCGACATT
CACTCACGGTTTTGAACCATCTATTCTCACATTCTCATCCCATCACCATATAGTCCCAATGACAG
GTGTCTTATCACACTTGATATTCGGTGTTTTGAACCATCTATTCTCACATTCAACCTATCACCTT
ACCTATACCTCTACACCCCAACCTCATAACCCTTGCTCAATACAC
Found at i:6845 original size:21 final size:21
Alignment explanation
Indices: 6821--6862 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6811 CCATCGGAGA
6821 CAAGACCCGATCGAA-CCTGAT
1 CAAG-CCCGATCGAAGCCTGAT
*
6842 CAAGCCTGATCGAAGCCTGAT
1 CAAGCCCGATCGAAGCCTGAT
6863 TGAAGCCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (21 bp):
CAAGCCCGATCGAAGCCTGAT
Left flanking sequence: Indices 6321 -- 6820
AAACACAAATCGACCCACCGTCGCCACCCTACTAAACCTTATTCGTCACTGAAACCGCCTCAACC
CCCGTCGTACCGTAAACTACTTCCCGGATCAAACCGAGTTTGCAGCCAGCCCCCATTCCCAGCTC
CCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAACAATGACCCTCCGCT
GCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGCGTGGTTTTTCTTGG
ACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGG
AAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTT
AGCAGACAGAACTCACCCCACGACCCGAAACCGCGATAACACGCGGAACAACGCAACACCGAACC
TCCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGA
Right flanking sequence: Indices 6863 -- 7362
TGAAGCCTGATCCAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGAGACCTAT
CCCAGGAGACCTAACCAGGAGACCTATCCAGGAGACCTGATCCAGGAGACACCCGGAAGAGATCC
AAGTAGCTGGTTGAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAGCTCTCCAACTAGCTC
CGAGTTCTCCTAGTACTTCACGGTACTTCAACCTTACCCTCCAACCCCTCCCATCTCCTCCAACC
CCCTCCCATCTCCTCCCATCTCCTCCTACCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAG
CACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACGCCGACGGCCTTGCCTACCTCCAG
CTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGAC
CTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGA
Found at i:6859 original size:11 final size:11
Alignment explanation
Indices: 6829--6874 Score: 69
Period size: 11 Copynumber: 4.4 Consensus size: 11
6819 GACAAGACCC
6829 GATCGAA-CCT
1 GATCGAAGCCT
6839 GATC-AAGCCT
1 GATCGAAGCCT
6849 GATCGAAGCCT
1 GATCGAAGCCT
*
6860 GATTGAAGCCT
1 GATCGAAGCCT
6871 GATC
1 GATC
6875 CAAGGAGACC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 2 0.06
10 11 0.34
11 19 0.59
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (11 bp):
GATCGAAGCCT
Left flanking sequence: Indices 6329 -- 6828
ATCGACCCACCGTCGCCACCCTACTAAACCTTATTCGTCACTGAAACCGCCTCAACCCCCGTCGT
ACCGTAAACTACTTCCCGGATCAAACCGAGTTTGCAGCCAGCCCCCATTCCCAGCTCCCACCACC
AGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAACAATGACCCTCCGCTGCACGACG
TGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGCGTGGTTTTTCTTGGACAGGATG
TCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGGAAAAGTGA
ACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTTAGCAGACA
GAACTCACCCCACGACCCGAAACCGCGATAACACGCGGAACAACGCAACACCGAACCTCCCTAGT
CACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGACCC
Right flanking sequence: Indices 6875 -- 7374
CAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGAGACCTATCCCAGGAGACCT
AACCAGGAGACCTATCCAGGAGACCTGATCCAGGAGACACCCGGAAGAGATCCAAGTAGCTGGTT
GAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAGCTCTCCAACTAGCTCCGAGTTCTCCTA
GTACTTCACGGTACTTCAACCTTACCCTCCAACCCCTCCCATCTCCTCCAACCCCCTCCCATCTC
CTCCCATCTCCTCCTACCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAGCACTACCCATCC
ACGCCGTCTGGCAGACGCTCTACCTGTACGCCGACGGCCTTGCCTACCTCCAGCTCGCAAACAAC
GACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGACCTACACCCAGGG
ACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACTCCACGCC
Found at i:6915 original size:26 final size:27
Alignment explanation
Indices: 6872--6977 Score: 128
Period size: 26 Copynumber: 3.9 Consensus size: 27
6862 TTGAAGCCTG
* * *
6872 ATCCAAGGAGACCGATCCAAGGAGACCA
1 ATCCCAGGAGACCTATCC-AGGAGACCT
6900 ATCCCA-G-GACCTATCCAAGGAGACCT
1 ATCCCAGGAGACCTATCC-AGGAGACCT
*
6926 ATCCCAGGAGACCTAACCAGGAGACCT
1 ATCCCAGGAGACCTATCCAGGAGACCT
6953 AT-CCAGGAGACCTGATCCAGGAGAC
1 ATCCCAGGAGACCT-ATCCAGGAGAC
6978 ACCCGGAAGA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
26 34 0.49
27 23 0.33
28 13 0.19
ACGTcount: A:0.34, C:0.31, G:0.24, T:0.11
Consensus pattern (27 bp):
ATCCCAGGAGACCTATCCAGGAGACCT
Left flanking sequence: Indices 6372 -- 6871
AAACCGCCTCAACCCCCGTCGTACCGTAAACTACTTCCCGGATCAAACCGAGTTTGCAGCCAGCC
CCCATTCCCAGCTCCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAAC
AATGACCCTCCGCTGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGC
GTGGTTTTTCTTGGACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAA
GAGATGTCACCAGGAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGC
TAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGACCCGAAACCGCGATAACACGCGGAACAA
CGCAACACCGAACCTCCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGAC
CCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATTGAAGCCTG
Right flanking sequence: Indices 6978 -- 7477
ACCCGGAAGAGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAG
CTCTCCAACTAGCTCCGAGTTCTCCTAGTACTTCACGGTACTTCAACCTTACCCTCCAACCCCTC
CCATCTCCTCCAACCCCCTCCCATCTCCTCCCATCTCCTCCTACCCACCATGAACAGGCTCGTCC
TAGCACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACGCCGACGGC
CTTGCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTT
CACCGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACT
CCACGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCG
GTGTCCCAGTACGACCCGGAGGAGGACAAATGGAACCAGAGCCAC
Found at i:6935 original size:40 final size:41
Alignment explanation
Indices: 6872--6977 Score: 132
Period size: 40 Copynumber: 2.6 Consensus size: 41
6862 TTGAAGCCTG
* *
6872 ATCCAAGGAGACCGATCCAAGGAGACC-AATCCCA-G-GACCT
1 ATCCAAGGAGACCTATCCCAGGAGACCTAA--CCAGGAGACCT
6912 ATCCAAGGAGACCTATCCCAGGAGACCTAACCAGGAGACCT
1 ATCCAAGGAGACCTATCCCAGGAGACCTAACCAGGAGACCT
6953 ATCC-AGGAGACCTGAT-CCAGGAGAC
1 ATCCAAGGAGACCT-ATCCCAGGAGAC
6978 ACCCGGAAGA
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
39 3 0.05
40 44 0.73
41 13 0.22
ACGTcount: A:0.34, C:0.31, G:0.24, T:0.11
Consensus pattern (41 bp):
ATCCAAGGAGACCTATCCCAGGAGACCTAACCAGGAGACCT
Left flanking sequence: Indices 6372 -- 6871
AAACCGCCTCAACCCCCGTCGTACCGTAAACTACTTCCCGGATCAAACCGAGTTTGCAGCCAGCC
CCCATTCCCAGCTCCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAAC
AATGACCCTCCGCTGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGC
GTGGTTTTTCTTGGACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAA
GAGATGTCACCAGGAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGC
TAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGACCCGAAACCGCGATAACACGCGGAACAA
CGCAACACCGAACCTCCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGAC
CCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATTGAAGCCTG
Right flanking sequence: Indices 6978 -- 7477
ACCCGGAAGAGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAG
CTCTCCAACTAGCTCCGAGTTCTCCTAGTACTTCACGGTACTTCAACCTTACCCTCCAACCCCTC
CCATCTCCTCCAACCCCCTCCCATCTCCTCCCATCTCCTCCTACCCACCATGAACAGGCTCGTCC
TAGCACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACGCCGACGGC
CTTGCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTT
CACCGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACT
CCACGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCG
GTGTCCCAGTACGACCCGGAGGAGGACAAATGGAACCAGAGCCAC
Found at i:6947 original size:13 final size:13
Alignment explanation
Indices: 6872--6977 Score: 117
Period size: 14 Copynumber: 7.8 Consensus size: 13
6862 TTGAAGCCTG
*
6872 ATCCAAGGAGACCG
1 ATCC-AGGAGACCT
*
6886 ATCCAAGGAGACCA
1 ATCC-AGGAGACCT
6900 ATCCCA-G-GACCT
1 AT-CCAGGAGACCT
6912 ATCCAAGGAGACCT
1 ATCC-AGGAGACCT
6926 ATCCCAGGAGACCT
1 AT-CCAGGAGACCT
*
6940 AACCAGGAGACCT
1 ATCCAGGAGACCT
6953 ATCCAGGAGACCT
1 ATCCAGGAGACCT
6966 GATCCAGGAGAC
1 -ATCCAGGAGAC
6978 ACCCGGAAGA
Statistics
Matches: 82, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
11 2 0.02
12 7 0.09
13 25 0.30
14 44 0.54
15 4 0.05
ACGTcount: A:0.34, C:0.31, G:0.24, T:0.11
Consensus pattern (13 bp):
ATCCAGGAGACCT
Left flanking sequence: Indices 6372 -- 6871
AAACCGCCTCAACCCCCGTCGTACCGTAAACTACTTCCCGGATCAAACCGAGTTTGCAGCCAGCC
CCCATTCCCAGCTCCCACCACCAGCAGAGCCGTCCGCCACAGGGTCTCTGCACCACCGACAGAAC
AATGACCCTCCGCTGCACGACGTGAAACGGGCCCGTCTCCGGGTGATCTCGAACGATGCCCGTGC
GTGGTTTTTCTTGGACAGGATGTCGCTGGAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAA
GAGATGTCACCAGGAAAAGTGAACTAATCCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGC
TAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGACCCGAAACCGCGATAACACGCGGAACAA
CGCAACACCGAACCTCCCTAGTCACCCACTACACAGGACGTGGACCAGACCATCGGAGACAAGAC
CCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATTGAAGCCTG
Right flanking sequence: Indices 6978 -- 7477
ACCCGGAAGAGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAG
CTCTCCAACTAGCTCCGAGTTCTCCTAGTACTTCACGGTACTTCAACCTTACCCTCCAACCCCTC
CCATCTCCTCCAACCCCCTCCCATCTCCTCCCATCTCCTCCTACCCACCATGAACAGGCTCGTCC
TAGCACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAGACGCTCTACCTGTACGCCGACGGC
CTTGCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTT
CACCGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACT
CCACGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCG
GTGTCCCAGTACGACCCGGAGGAGGACAAATGGAACCAGAGCCAC
Found at i:7137 original size:10 final size:10
Alignment explanation
Indices: 7104--7148 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
7094 CCCTCCAACC
7104 CCTCCCATCT
1 CCTCCCATCT
* * *
7114 CCTCCAACCC
1 CCTCCCATCT
7124 CCTCCCATCT
1 CCTCCCATCT
7134 CCTCCCATCT
1 CCTCCCATCT
7144 CCTCC
1 CCTCC
7149 TACCCACCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.11, C:0.64, G:0.00, T:0.24
Consensus pattern (10 bp):
CCTCCCATCT
Left flanking sequence: Indices 6604 -- 7103
GTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGGAAAAGTGAACTAATCCCATCTAT
TTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTTAGCAGACAGAACTCACCCCACGA
CCCGAAACCGCGATAACACGCGGAACAACGCAACACCGAACCTCCCTAGTCACCCACTACACAGG
ACGTGGACCAGACCATCGGAGACAAGACCCGATCGAACCTGATCAAGCCTGATCGAAGCCTGATT
GAAGCCTGATCCAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGGAGACCTATC
CCAGGAGACCTAACCAGGAGACCTATCCAGGAGACCTGATCCAGGAGACACCCGGAAGAGATCCA
AGTAGCTGGTTGAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAGCTCTCCAACTAGCTCC
GAGTTCTCCTAGTACTTCACGGTACTTCAACCTTACCCTCCAACC
Right flanking sequence: Indices 7149 -- 7648
TACCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAGCACTACCCATCCACGCCGTCTGGCAG
ACGCTCTACCTGTACGCCGACGGCCTTGCCTACCTCCAGCTCGCAAACAACGACTTGCTCAAGCT
CAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGACCTACACCCAGGGACAGCAGGTAGAGG
CGCTTGCGAGCCCACCCGAGCACTCCACGCCGTTCCTCGTGGGCTCCACCCTCTACGTGCTCCAT
TCTGACGCCCGCGGCCGTCTCGCGGTGTCCCAGTACGACCCGGAGGAGGACAAATGGAACCAGAG
CCACGAGCCCGACTTCACCACCATCGGCGACTCAAAATACTACAGCGGGTGCTCGGTGATGGCGG
TCCCCGGCGACAACAACACCGTGTACGTATACGGAGGCGATCTTCCCGACTCCGACCTGGTGTCG
GGCCGCCTCCTCTCGCTCGACCTCGACGTCCTCCGGTTCAACAAC
Found at i:7148 original size:20 final size:20
Alignment explanation
Indices: 7095--7138 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
7085 TCAACCTTAC
7095 CCTCCAA-CCCCTCCCATCT
1 CCTCCAACCCCCTCCCATCT
7114 CCTCCAACCCCCTCCCATCT
1 CCTCCAACCCCCTCCCATCT
7134 CCTCC
1 CCTCC
7139 CATCTCCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.14, C:0.66, G:0.00, T:0.20
Consensus pattern (20 bp):
CCTCCAACCCCCTCCCATCT
Left flanking sequence: Indices 6595 -- 7094
GAACCCGCGGTCCCGATCGGGCGAAAACCAAAACAAAGAGATGTCACCAGGAAAAGTGAACTAAT
CCCATCTATTTTGCTAGCAGGAATTGCTGGTTTTAGCTAAGTGATTGCGTTAGCAGACAGAACTC
ACCCCACGACCCGAAACCGCGATAACACGCGGAACAACGCAACACCGAACCTCCCTAGTCACCCA
CTACACAGGACGTGGACCAGACCATCGGAGACAAGACCCGATCGAACCTGATCAAGCCTGATCGA
AGCCTGATTGAAGCCTGATCCAAGGAGACCGATCCAAGGAGACCAATCCCAGGACCTATCCAAGG
AGACCTATCCCAGGAGACCTAACCAGGAGACCTATCCAGGAGACCTGATCCAGGAGACACCCGGA
AGAGATCCAAGTAGCTGGTTGAATAGGACAGTTCCTACGCATACCCGCTACCTCCGAGCTCTCCA
ACTAGCTCCGAGTTCTCCTAGTACTTCACGGTACTTCAACCTTAC
Right flanking sequence: Indices 7139 -- 7638
CATCTCCTCCTACCCACCATGAACAGGCTCGTCCTAGCACTATTGCTAGCACTACCCATCCACGC
CGTCTGGCAGACGCTCTACCTGTACGCCGACGGCCTTGCCTACCTCCAGCTCGCAAACAACGACT
TGCTCAAGCTCAAGTTCTCCATCGACGGCTCCTTCACCGCAGACTCGACCTACACCCAGGGACAG
CAGGTAGAGGCGCTTGCGAGCCCACCCGAGCACTCCACGCCGTTCCTCGTGGGCTCCACCCTCTA
CGTGCTCCATTCTGACGCCCGCGGCCGTCTCGCGGTGTCCCAGTACGACCCGGAGGAGGACAAAT
GGAACCAGAGCCACGAGCCCGACTTCACCACCATCGGCGACTCAAAATACTACAGCGGGTGCTCG
GTGATGGCGGTCCCCGGCGACAACAACACCGTGTACGTATACGGAGGCGATCTTCCCGACTCCGA
CCTGGTGTCGGGCCGCCTCCTCTCGCTCGACCTCGACGTCCTCCG
Found at i:12428 original size:15 final size:15
Alignment explanation
Indices: 12408--12438 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
12398 TTCCTGGCAC
12408 GATCACCACGGGTAA
1 GATCACCACGGGTAA
12423 GATCACCACGGGTAA
1 GATCACCACGGGTAA
12438 G
1 G
12439 TGTCCAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.29, T:0.13
Consensus pattern (15 bp):
GATCACCACGGGTAA
Left flanking sequence: Indices 11908 -- 12407
GCCTTAGCCACGGCAATAAGCTGATGGCTGCAAACGCTGCGCACAGCGCATGAGAAATTTCTCTC
GCAGTTACACATCACTTTTAGTCAATACAGAAATCCTTAACCTTTGCAACTTTGGTATCCCACCC
ATAGTGCAGATACCGACGTTGCCATATAAGAACCTAAGACTACTGTAACTCAACTGATTAGAAAA
GAACCGCTTAAAATAATAACTATGTCTCAGCCCTCTTCTCCCCAGGAGAACTCTCTCGCCAACGA
CAGCTCTAGCTTGCTGAACCGCTCGACTGCCACCGGTTGAGCCAGCAACCAGCCGTCTTTCCAAC
AAAAGCCTGCTTTCAATTCTGGTTCCGACCAATCCACTAGTCGGTGAGGTTTTTATTGGTTAATT
CTCGTATCGATAGGCCCTCCACAAAGTTCCACGTCTACGAGCAGTAGACTAACTGACAGAGAGCT
CGTGGGTGAACTCCCCGGACGTAGGGATTCGTGTGTTCCTGGCAC
Right flanking sequence: Indices 12439 -- 12938
TGTCCAACCCTCATCCGGTCTAAATCCAGGGATCATCCCGAGTTGACAGCACTAAACCCGGCTAA
AGCCCTAGCTCGTAAACACGTCTTAGCCTGTTTCTCTATGTTACCCGAATGGCGTTAGATCACCG
CGTGGTCATCGTCCCATCGTAGTCTCATCAAGTGCGTTATACCGAGGCTTTCGCTGAGCGAGGCT
TGGCAAAACCTCGAGAGACCAACCTCGCAACAACCAGCCGACGGCCACCGCAGCCTGTCAACCCC
TACTCGTAGATCGCCTGTCACATGATCGCTAACCGTAACTGGCTGAGACCCACACGACCATTAAG
CGAGACACAAAACGTAGCAGACCTGGTGGACAAAACATCACGACCAAAACCAAGCATTCAAAAGG
TAAAACCTATACAACACCGCATTCTGAAAGTAAGTCTTACAAGGAAACCTACAACCCACTTTGCT
ACTACCGGACCCCTGGGCCTCTGCGAGTCAATTGCCGAGTCCCCG
Found at i:13182 original size:16 final size:16
Alignment explanation
Indices: 13161--13206 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
13151 CTCCAGGTCA
13161 CACACCCGCACACCGC
1 CACACCCGCACACCGC
*
13177 CACACCCACACACCGC
1 CACACCCGCACACCGC
* **
13193 GACAAACGCACACC
1 CACACCCGCACACC
13207 ACAGCCGCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.33, C:0.57, G:0.11, T:0.00
Consensus pattern (16 bp):
CACACCCGCACACCGC
Left flanking sequence: Indices 12661 -- 13160
CAACAACCAGCCGACGGCCACCGCAGCCTGTCAACCCCTACTCGTAGATCGCCTGTCACATGATC
GCTAACCGTAACTGGCTGAGACCCACACGACCATTAAGCGAGACACAAAACGTAGCAGACCTGGT
GGACAAAACATCACGACCAAAACCAAGCATTCAAAAGGTAAAACCTATACAACACCGCATTCTGA
AAGTAAGTCTTACAAGGAAACCTACAACCCACTTTGCTACTACCGGACCCCTGGGCCTCTGCGAG
TCAATTGCCGAGTCCCCGGATCGCCAATGTAACAGGGACACGGTACGCCAAACAATGTGACATGG
GTAACAGGTGATCGCCAAGACAAACGACCCCTCAACCCAGAAACAATCGCGAACCTGACGTTTGC
GGAACCCATTGTTCTACTGTCTACCGTTTTACGCCTATCCCGATCCACCCGATTGCCCGGTGTTT
ATTTCCTTGTTCACTCGTCTAGCGTACGAATGGCACTCCAGGTCA
Right flanking sequence: Indices 13207 -- 13706
ACAGCCGCTAACCACCGACGCGTCTGTCCTTCTCTTCCCCCCATCCCATTCCCAGCCCCACTTCC
TCCTCTATTTCCGCTTCCCTCCCCGAAACAACAACACGCAAAAAGTATAAATAGGCGCAGAAAAC
CACCCGATAATCCACGCAAAACCCCCCAGAACCACGGTGTTTTTCCCAGGAAACAACACAACCAC
CCCCAGCCGCCACCACTACACCCACACAACCCCCCCACACCACCACCAACCCCGCTCTTCCTCTC
ATCGCCGACACTCGCTGCCCGGTCCCGTCGCGCTACCCCTATTTCGCGTTGTTCGCACACTTTGC
CCGACGCGCCCCACGACATTTTTTTTTCACAGTAACACCCACTCTTCGCAACCATGGCTACCGTG
ACCGTAGTCACCAGTGTCCCCCCCACGCTCGAGCTCATTGGCTCCGCGTTGTCGCAGACCCTTGT
CGGGTGGCTCGATGCCCTCGAGGTGCTTCCCGGCGGCTCGGTGGT
Found at i:15457 original size:13 final size:13
Alignment explanation
Indices: 15439--15464 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15429 GCAGAGAATA
15439 CTCTTTGACCATG
1 CTCTTTGACCATG
15452 CTCTTTGACCATG
1 CTCTTTGACCATG
15465 AACTTATTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
CTCTTTGACCATG
Left flanking sequence: Indices 14939 -- 15438
ACGGCAACGACGTGTTCCTCAAAACGGGCCGCCAGGCCAAGTTCTTGAACCCGTTTGACGAGTAC
TACAACGCCGAGCTGTTCATTTTGCAGCGGGTGATTGACGAGGTGCTTGAGAAAACCAACGTGCT
TGTGACGCGGCTGAAGCTCATTGTCGAGCACGAGAACTTGCCGGTTCCCCCGCCGCACTTGCTCA
TTAATACCAACGCAGGGGTGACGGCACCCGAGTACGAGAAGCTTTTGCGGGCGATCCCCGAGGCG
TTTGAGCGGGCGTGCGGCGGGTTGCAGCTGGAGAGAGACCTTTTGGTGTTGAACGACGAAATTGC
CCGCTACGGGGCGTAACTAATAACTAATGACAGCCTAGGCTAATAAACAGACATGAAGAGGCGAG
TAGTTGAAAGAAAAATACGGAGCTACACGGTTTATGGCAATTTCACAAGAGCCACAATTGAAGGA
AGAACCAGAGCCACAAATTAGGAAGCCATAAATAAGCAGAGAATA
Right flanking sequence: Indices 15465 -- 15964
AACTTATTACTCAATCACCTCGCTCTCACAATACAATGTGATCCCTATAATAGACCATATAGTAT
GTTCAAATGTAAGCAACACAGCAATATATCACTAAAATACTAAACTCTCAAATCTCAATCAAGAA
GCACAGATCTAGATTTCAATTTCAATTTCAATTTCAACATCAATTTTTATCACAAAAATATCTGT
TTTTGAAATTGAAATCGAATCTACCCCAAAATTATCCATGTAATCAATTTGACCAGCCAGCTGTT
AGGAAGATTTTGCTTTGTTTGTACCAAATGGTGCGATTAGCCCAATTCATCTCCCTCGAGACCTG
GTATCATCACCACCCACTACTCGTTACATTACGTTCATTACTCTATAATCGTCCCAATAACGCTG
GGAGCTCGCCACTCATATTCTCGAGGGCTCAGCAAACGCCTGGCGGAACCACTCCAAGATCCGTC
GGTAGATCACTATGTTGGCGTTGTCAAACGAAATGCTGTGGTCGG
Found at i:15616 original size:6 final size:6
Alignment explanation
Indices: 15607--15631 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15597 ACAGATCTAG
15607 ATTTCA ATTTCA ATTTCA ATTTCA A
1 ATTTCA ATTTCA ATTTCA ATTTCA A
15632 CATCAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
ATTTCA
Left flanking sequence: Indices 15107 -- 15606
TGCCGGTTCCCCCGCCGCACTTGCTCATTAATACCAACGCAGGGGTGACGGCACCCGAGTACGAG
AAGCTTTTGCGGGCGATCCCCGAGGCGTTTGAGCGGGCGTGCGGCGGGTTGCAGCTGGAGAGAGA
CCTTTTGGTGTTGAACGACGAAATTGCCCGCTACGGGGCGTAACTAATAACTAATGACAGCCTAG
GCTAATAAACAGACATGAAGAGGCGAGTAGTTGAAAGAAAAATACGGAGCTACACGGTTTATGGC
AATTTCACAAGAGCCACAATTGAAGGAAGAACCAGAGCCACAAATTAGGAAGCCATAAATAAGCA
GAGAATACTCTTTGACCATGCTCTTTGACCATGAACTTATTACTCAATCACCTCGCTCTCACAAT
ACAATGTGATCCCTATAATAGACCATATAGTATGTTCAAATGTAAGCAACACAGCAATATATCAC
TAAAATACTAAACTCTCAAATCTCAATCAAGAAGCACAGATCTAG
Right flanking sequence: Indices 15632 -- 16131
CATCAATTTTTATCACAAAAATATCTGTTTTTGAAATTGAAATCGAATCTACCCCAAAATTATCC
ATGTAATCAATTTGACCAGCCAGCTGTTAGGAAGATTTTGCTTTGTTTGTACCAAATGGTGCGAT
TAGCCCAATTCATCTCCCTCGAGACCTGGTATCATCACCACCCACTACTCGTTACATTACGTTCA
TTACTCTATAATCGTCCCAATAACGCTGGGAGCTCGCCACTCATATTCTCGAGGGCTCAGCAAAC
GCCTGGCGGAACCACTCCAAGATCCGTCGGTAGATCACTATGTTGGCGTTGTCAAACGAAATGCT
GTGGTCGGAGTCGGGGTACACCAAGAGATCGTAGTTGTCGACCTCCTCCAAATTGAACTGGTCCA
ACAACGCGTAGGTGTTCTGGATGTGGACGTTGTCGTCCCCGGTGCCGTGGGCCACCATAAACCGC
CGGGCGTTCTTGAAGTTGGTGACGTTGTTCACCAGAGCGGTGGCG
Found at i:18379 original size:12 final size:13
Alignment explanation
Indices: 18354--18385 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
18344 AAAGGCTGGT
18354 AACGAGGAAGGAA
1 AACGAGGAAGGAA
18367 AACGAGG-AGGAA
1 AACGAGGAAGGAA
18379 AACGAGG
1 AACGAGG
18386 GATGGAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.50, C:0.09, G:0.41, T:0.00
Consensus pattern (13 bp):
AACGAGGAAGGAA
Left flanking sequence: Indices 17854 -- 18353
ATTTCGTGGGTTTTTCCGCCGTGGTCGAAGGCGTTCCCGGGGAAGAGCACCCGCAGCAGGTTGTC
AGCCACCTGGTGGACGTAGAAGCCGTCCTCTCGAACCACATACTGGCCCTGGTCGTGGAGCAAAG
CGTCGTCGGAACGGAGCCACTGCACCAGCTGGAACTCGGGTCTGAACACCCCAGCGTGCCAGCCG
GTGACGTTCAAGCGGCGGGGGTCGTCTTTGTGGCTGTGGGCGGGGCTGGGAACGGGCACACCCAC
CCGGGCTGTGGCCAAGAGAGTGTTGATGTGGCCCACAAGCAAGTAGGAGCCCCACACAAGAAGCA
AGAGCACTGACCCCGTCCAGAGCGGCCTGCTCAGCCGTCTGGGTTCGTCGTATTTCATGGTTGCG
GGGTTGTAGCGAGGGTAGGAGATGTCTTGACAGGGTCCTTCGTTAATGCAAGTGATTAAGCCGTG
ATGTCATGCGGCTTTGGTCGGGACACGACGAAACAAAAGGCTGGT
Right flanking sequence: Indices 18386 -- 18885
GATGGAAATGAGAACGGGGTGTGGAACAATGGCTTTTTTAAGTTGGCTGGCGGAAGTAATGGTTT
AGTGGGTTTATGAGGGCTCAGAAGGTATCTCACCTTTGACACCTCAGCAAGTGTAAGAACAGAGA
ATGAGGCTATGGCAAGGCAGCCTCCCGCAGCGATCGTGTCAGCATTAGAGCCGTTGGCCACACCT
AATCGTATTTCTGTAAGATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGACTCGTT
TGTTCTTCACATTGGCTATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCACGGGC
TCGGGCTTGGGCTCGGGCTTGGGTTCCTTCTTTGGCTTGGGCTTGGGCTTCAGTTGTGGGGCTCC
CATGCGGCCCAGGAGCGTCAGCATCATCATCAGGAGGAGAAGCAGGTCGTCTTCGAAGTCGTCAA
AGTCTGCGGGGGTGATTTCGCCCCGGATCTTGACGAGCTCGCCCT
Found at i:18724 original size:12 final size:12
Alignment explanation
Indices: 18707--18733 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
18697 GTTTCTCCAC
18707 GGGCTCGGGCTT
1 GGGCTCGGGCTT
18719 GGGCTCGGGCTT
1 GGGCTCGGGCTT
18731 GGG
1 GGG
18734 TTCCTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.22, G:0.56, T:0.22
Consensus pattern (12 bp):
GGGCTCGGGCTT
Left flanking sequence: Indices 18207 -- 18706
GCTCAGCCGTCTGGGTTCGTCGTATTTCATGGTTGCGGGGTTGTAGCGAGGGTAGGAGATGTCTT
GACAGGGTCCTTCGTTAATGCAAGTGATTAAGCCGTGATGTCATGCGGCTTTGGTCGGGACACGA
CGAAACAAAAGGCTGGTAACGAGGAAGGAAAACGAGGAGGAAAACGAGGGATGGAAATGAGAACG
GGGTGTGGAACAATGGCTTTTTTAAGTTGGCTGGCGGAAGTAATGGTTTAGTGGGTTTATGAGGG
CTCAGAAGGTATCTCACCTTTGACACCTCAGCAAGTGTAAGAACAGAGAATGAGGCTATGGCAAG
GCAGCCTCCCGCAGCGATCGTGTCAGCATTAGAGCCGTTGGCCACACCTAATCGTATTTCTGTAA
GATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGACTCGTTTGTTCTTCACATTGGC
TATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCAC
Right flanking sequence: Indices 18734 -- 19233
TTCCTTCTTTGGCTTGGGCTTGGGCTTCAGTTGTGGGGCTCCCATGCGGCCCAGGAGCGTCAGCA
TCATCATCAGGAGGAGAAGCAGGTCGTCTTCGAAGTCGTCAAAGTCTGCGGGGGTGATTTCGCCC
CGGATCTTGACGAGCTCGCCCTCTTCTTCGAGAGTGACGGGTGCTGGTTTGGGCGTGGGGTTGGC
CTTGGGCACGGGCTTAGACTCTGGTTTCGTAGGTTCGGGCTCCTTTGCCGGGACTGGCTCTGGCT
TAGACTCTGGCTTAGACTCCGGCTTCTCGGCTGGCTTCTCAGCTGGCGTCTCAGCTGGCTCCACC
GGCTTCTCCGCCGGCTTCTCAGGCTTACCAGCGAGTTTCTCGGGCTTTTGGGGCTTCTCGGGCTT
CTCAATGGGCTTCGCAGCCTCCTGGGGCACAGGCTTAGCAGCCTCCACTGCGGGCTTAGCAGCTT
CCTTGGGCACCCGCACCGACTCCACCACGGGCACCTTCGGTTCCT
Found at i:19003 original size:12 final size:12
Alignment explanation
Indices: 18986--19018 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
18976 CCGGGACTGG
18986 CTCTGGCTTAGA
1 CTCTGGCTTAGA
18998 CTCTGGCTTAGA
1 CTCTGGCTTAGA
*
19010 CTCCGGCTT
1 CTCTGGCTT
19019 CTCGGCTGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.30, G:0.24, T:0.33
Consensus pattern (12 bp):
CTCTGGCTTAGA
Left flanking sequence: Indices 18486 -- 18985
TTGACACCTCAGCAAGTGTAAGAACAGAGAATGAGGCTATGGCAAGGCAGCCTCCCGCAGCGATC
GTGTCAGCATTAGAGCCGTTGGCCACACCTAATCGTATTTCTGTAAGATGAGGACAGAATTTGGA
AAATCAGCTGACCCAAAGTCAAGACTCGTTTGTTCTTCACATTGGCTATATAGGTCTATTTCTTG
CCCTTTTTCTTCTTTGGTTTCTCCACGGGCTCGGGCTTGGGCTCGGGCTTGGGTTCCTTCTTTGG
CTTGGGCTTGGGCTTCAGTTGTGGGGCTCCCATGCGGCCCAGGAGCGTCAGCATCATCATCAGGA
GGAGAAGCAGGTCGTCTTCGAAGTCGTCAAAGTCTGCGGGGGTGATTTCGCCCCGGATCTTGACG
AGCTCGCCCTCTTCTTCGAGAGTGACGGGTGCTGGTTTGGGCGTGGGGTTGGCCTTGGGCACGGG
CTTAGACTCTGGTTTCGTAGGTTCGGGCTCCTTTGCCGGGACTGG
Right flanking sequence: Indices 19019 -- 19518
CTCGGCTGGCTTCTCAGCTGGCGTCTCAGCTGGCTCCACCGGCTTCTCCGCCGGCTTCTCAGGCT
TACCAGCGAGTTTCTCGGGCTTTTGGGGCTTCTCGGGCTTCTCAATGGGCTTCGCAGCCTCCTGG
GGCACAGGCTTAGCAGCCTCCACTGCGGGCTTAGCAGCTTCCTTGGGCACCCGCACCGACTCCAC
CACGGGCACCTTCGGTTCCTTAGGCACCGGAGGCACCTGGGACACAGGGGCCTGTGCCGGTTTGG
CCGCGGGCGACCGCACGGGGGACGCCACCGGGGCTGCGCCGTTGGCCTTGGCAGGGCTGAACTCC
GGCTTCTTCTTCGGAGACCCGATCTTCACCGGCACCCGCGGCGGAGACGCCTTCGGGGGCCTCAC
CGGGGTGGCGGGCTCGTGGTGGCGGGCCAGGCGGGCCTCAAACGGGTTTATCTGGGGCTCGGAGT
CCTGCTCGTGCACCTCGTAGCTCGGGATGCGGAAGGGATTGGGTC
Found at i:19029 original size:12 final size:12
Alignment explanation
Indices: 19014--19080 Score: 68
Period size: 12 Copynumber: 5.8 Consensus size: 12
19004 CTTAGACTCC
*
19014 GGCTTCTCGGCT
1 GGCTTCTCAGCT
19026 GGCTTCTCAGCT
1 GGCTTCTCAGCT
*
19038 GGCGTCTCAGCT
1 GGCTTCTCAGCT
*
19050 GGC-TC-CA-CC
1 GGCTTCTCAGCT
* *
19059 GGCTTCTCCGCC
1 GGCTTCTCAGCT
19071 GGCTTCTCAG
1 GGCTTCTCAG
19081 GCTTACCAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
9 4 0.09
10 4 0.09
11 3 0.06
12 36 0.77
ACGTcount: A:0.06, C:0.39, G:0.28, T:0.27
Consensus pattern (12 bp):
GGCTTCTCAGCT
Left flanking sequence: Indices 18514 -- 19013
GAATGAGGCTATGGCAAGGCAGCCTCCCGCAGCGATCGTGTCAGCATTAGAGCCGTTGGCCACAC
CTAATCGTATTTCTGTAAGATGAGGACAGAATTTGGAAAATCAGCTGACCCAAAGTCAAGACTCG
TTTGTTCTTCACATTGGCTATATAGGTCTATTTCTTGCCCTTTTTCTTCTTTGGTTTCTCCACGG
GCTCGGGCTTGGGCTCGGGCTTGGGTTCCTTCTTTGGCTTGGGCTTGGGCTTCAGTTGTGGGGCT
CCCATGCGGCCCAGGAGCGTCAGCATCATCATCAGGAGGAGAAGCAGGTCGTCTTCGAAGTCGTC
AAAGTCTGCGGGGGTGATTTCGCCCCGGATCTTGACGAGCTCGCCCTCTTCTTCGAGAGTGACGG
GTGCTGGTTTGGGCGTGGGGTTGGCCTTGGGCACGGGCTTAGACTCTGGTTTCGTAGGTTCGGGC
TCCTTTGCCGGGACTGGCTCTGGCTTAGACTCTGGCTTAGACTCC
Right flanking sequence: Indices 19081 -- 19580
GCTTACCAGCGAGTTTCTCGGGCTTTTGGGGCTTCTCGGGCTTCTCAATGGGCTTCGCAGCCTCC
TGGGGCACAGGCTTAGCAGCCTCCACTGCGGGCTTAGCAGCTTCCTTGGGCACCCGCACCGACTC
CACCACGGGCACCTTCGGTTCCTTAGGCACCGGAGGCACCTGGGACACAGGGGCCTGTGCCGGTT
TGGCCGCGGGCGACCGCACGGGGGACGCCACCGGGGCTGCGCCGTTGGCCTTGGCAGGGCTGAAC
TCCGGCTTCTTCTTCGGAGACCCGATCTTCACCGGCACCCGCGGCGGAGACGCCTTCGGGGGCCT
CACCGGGGTGGCGGGCTCGTGGTGGCGGGCCAGGCGGGCCTCAAACGGGTTTATCTGGGGCTCGG
AGTCCTGCTCGTGCACCTCGTAGCTCGGGATGCGGAAGGGATTGGGTCTCGCGGGCTTGGGAGCA
CCCTGGCGGTGGCTGGGTCTCGCCTTGGGCAACCAGGTCTCGTGT
Found at i:20329 original size:11 final size:11
Alignment explanation
Indices: 20290--20369 Score: 74
Period size: 11 Copynumber: 7.3 Consensus size: 11
20280 CACAGGTGAT
*
20290 TGGCTGGG-GT
1 TGGCTGGGTGG
*
20300 TGGCTGGG-GT
1 TGGCTGGGTGG
* *
20310 TGACTGTGTGG
1 TGGCTGGGTGG
*
20321 TGGCTGTGTGG
1 TGGCTGGGTGG
20332 TGGCTGGGTGG
1 TGGCTGGGTGG
*
20343 TTGGTTGGGTGG
1 -TGGCTGGGTGG
20355 TTGGCTGGGTGG
1 -TGGCTGGGTGG
20367 TGG
1 TGG
20370 TGTAGGTCTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
10 16 0.26
11 24 0.39
12 21 0.34
ACGTcount: A:0.01, C:0.07, G:0.57, T:0.34
Consensus pattern (11 bp):
TGGCTGGGTGG
Left flanking sequence: Indices 19790 -- 20289
AGCACCGGGGAGGGTGCTGGACGGTGGCTGGCTGGCCAAGCGCGGACGTGGCCCTCCACGGGTGG
GTAAGCTGATCGGGGTGAAATTGGCCGAGCACCTGGTGCCTCCTGATCAGACCACTGACGTGGCA
GGAACGTAGGGCTGGTGGGCCAGCTGACGGGCGAGCGAACGGGCCGCTGACGTGACAGCTCGCGG
GTTGATTAGCGTAGGCAAGGGAGTCACGGTGAATAAGCCGTGATTAGGCGAGCGAGGCTTAGGGT
GGGGGTGAGAGGGGTATCTAGGCCGTTGGCGGTTGGATGGGGTGGTTAATCGTCTCGTAGACGGG
CTGAGGGGGCCGCAAGCGGCGCCCCCTCAGACTCCCCCAACGCTTATTGTGGGGTGAGTTGTGAA
GGGGTTGTGGTGGTGTATGGGTTCAGGGGGAAGGGTAGCCTAGAGGTGGAAGAGAAGGTGGAGAC
GGTAGGACGGTAAGGTGGACTGGGGTGAACTTGGGCACAGGTGAT
Right flanking sequence: Indices 20370 -- 20869
TGTAGGTCTACAGATGGCTCCGGAATGGTGGTTTTAGCACTACAGGATTACAGTCTATTCAGTGG
ATTCAACAGCTAAAAGCTACACTCTCGCGACTAGTGTAATCTACTGAAACGAACGGAAGACACCC
CAATTTGCAGTCTGCTCTCACCCTTCCCACTCGGCTTCCCTTTACCTACACCCGGTGGTCCCGAG
GTTTCACCCTTTACGAGAACAAAGAAGGCATCCTTACCCGTAGAAGAAACTCCGGCCTCGTAACA
CACACACACACAATTCGAACAACTCTTCACATTACCCCATTCACTCAGATCACCCACTACTTCTA
AGATCACCCACCCATTACTTCCATACTCGTCTCCCGTTTGCCTACGTATTACCCCAAAACAGGCG
CCAAAGCCAAACAATAAATCATACCATCAAACCATGGACACCCCTAGACACCAAACTAACACACT
ATGCCCTCATAACACCCCTATCTCCATCTCTCCTTCTCCACCGCC
Found at i:20353 original size:12 final size:12
Alignment explanation
Indices: 20284--20367 Score: 81
Period size: 12 Copynumber: 7.5 Consensus size: 12
20274 CTTGGGCACA
*
20284 GGTGATTGGCT-
1 GGTGGTTGGCTG
20295 GG-GGTTGGCT-
1 GGTGGTTGGCTG
*
20305 GG-GGTTGACTG
1 GGTGGTTGGCTG
*
20316 TGTGG-TGGCTG
1 GGTGGTTGGCTG
*
20327 TGTGG-TGGCTG
1 GGTGGTTGGCTG
*
20338 GGTGGTTGGTTG
1 GGTGGTTGGCTG
20350 GGTGGTTGGCTG
1 GGTGGTTGGCTG
20362 GGTGGT
1 GGTGGT
20368 GGTGTAGGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
10 16 0.25
11 23 0.37
12 24 0.38
ACGTcount: A:0.02, C:0.07, G:0.56, T:0.35
Consensus pattern (12 bp):
GGTGGTTGGCTG
Left flanking sequence: Indices 19784 -- 20283
TAGCCAAGCACCGGGGAGGGTGCTGGACGGTGGCTGGCTGGCCAAGCGCGGACGTGGCCCTCCAC
GGGTGGGTAAGCTGATCGGGGTGAAATTGGCCGAGCACCTGGTGCCTCCTGATCAGACCACTGAC
GTGGCAGGAACGTAGGGCTGGTGGGCCAGCTGACGGGCGAGCGAACGGGCCGCTGACGTGACAGC
TCGCGGGTTGATTAGCGTAGGCAAGGGAGTCACGGTGAATAAGCCGTGATTAGGCGAGCGAGGCT
TAGGGTGGGGGTGAGAGGGGTATCTAGGCCGTTGGCGGTTGGATGGGGTGGTTAATCGTCTCGTA
GACGGGCTGAGGGGGCCGCAAGCGGCGCCCCCTCAGACTCCCCCAACGCTTATTGTGGGGTGAGT
TGTGAAGGGGTTGTGGTGGTGTATGGGTTCAGGGGGAAGGGTAGCCTAGAGGTGGAAGAGAAGGT
GGAGACGGTAGGACGGTAAGGTGGACTGGGGTGAACTTGGGCACA
Right flanking sequence: Indices 20368 -- 20867
GGTGTAGGTCTACAGATGGCTCCGGAATGGTGGTTTTAGCACTACAGGATTACAGTCTATTCAGT
GGATTCAACAGCTAAAAGCTACACTCTCGCGACTAGTGTAATCTACTGAAACGAACGGAAGACAC
CCCAATTTGCAGTCTGCTCTCACCCTTCCCACTCGGCTTCCCTTTACCTACACCCGGTGGTCCCG
AGGTTTCACCCTTTACGAGAACAAAGAAGGCATCCTTACCCGTAGAAGAAACTCCGGCCTCGTAA
CACACACACACACAATTCGAACAACTCTTCACATTACCCCATTCACTCAGATCACCCACTACTTC
TAAGATCACCCACCCATTACTTCCATACTCGTCTCCCGTTTGCCTACGTATTACCCCAAAACAGG
CGCCAAAGCCAAACAATAAATCATACCATCAAACCATGGACACCCCTAGACACCAAACTAACACA
CTATGCCCTCATAACACCCCTATCTCCATCTCTCCTTCTCCACCG
Found at i:23317 original size:6 final size:6
Alignment explanation
Indices: 23306--23344 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
23296 AAGCCCGAGG
23306 AGGAGA AGGAGA AGGAGA AGG-GAA AGGAGA AGGAGA AGG
1 AGGAGA AGGAGA AGGAGA AGGAG-A AGGAGA AGGAGA AGG
23345 GTGAGGGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 1 0.03
6 29 0.94
7 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (6 bp):
AGGAGA
Left flanking sequence: Indices 22806 -- 23305
GGATGACATGGCCATCATGAACTTGAAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGG
CGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGGCGGGTGCTGCAGTTGGCC
ACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCA
CTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACCC
CCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAG
GCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCGCAGGA
GAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACGCCGGCGGACA
CCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGG
Right flanking sequence: Indices 23345 -- 23844
GTGAGGGAGAGGACAAGGACAAGGGCGAGGACAAGGGCGAGGACAAGGACAAGGGCGAGGACAAG
CCTGAGAAGGGCGAAGAGCCTGAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAAGACAA
GCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTCGACGT
CGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCATGGCA
CTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGG
CCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTACCTGG
ACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACATGCGC
CAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTG
Found at i:23351 original size:24 final size:23
Alignment explanation
Indices: 23306--23374 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
23296 AAGCCCGAGG
*
23306 AGGAGAAGGAGAAGGAGAAGGGAA
1 AGGAGAAGGAGAAGG-GGAGGGAA
*
23330 AGGAGAAGGAGAAGGGTGAGGGAG
1 AGGAGAAGGAGAAGGG-GAGGGAA
* *
23354 AGGACAAGGACAAGGGCGAGG
1 AGGAGAAGGAGAAGGG-GAGG
23375 ACAAGGGCGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.42, C:0.04, G:0.52, T:0.01
Consensus pattern (23 bp):
AGGAGAAGGAGAAGGGGAGGGAA
Left flanking sequence: Indices 22806 -- 23305
GGATGACATGGCCATCATGAACTTGAAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGG
CGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGGCGGGTGCTGCAGTTGGCC
ACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCA
CTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACCC
CCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAG
GCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCGCAGGA
GAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACGCCGGCGGACA
CCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGG
Right flanking sequence: Indices 23375 -- 23874
ACAAGGGCGAGGACAAGGACAAGGGCGAGGACAAGCCTGAGAAGGGCGAAGAGCCTGAGGACAAG
CCTGACAAGCCTGAGGACAAGGAGGGCGAAGACAAGCCTGACAAGCCCGACTCCGACTCCGACTC
GGACGACGAGGACCAGCCGCCGCAGCCCTCGACGTCGGACGCCGGCGACGGCTCCAACAAACAGC
TGACCGTCGACCACACCGGGCAGTACTTCATGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTG
GCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTA
CGAGTTCGACATCATCCCCGGCGAGGACTACCTGGACTCCGAGGACGACGGGTCGGACGACCTGG
TCAACCTCCACCAGCACAACGCCCGCGACATGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTC
AACGCGGACGTGTTGCCCACGCAGGGCGAGGAGATGTTCTCGATT
Found at i:23357 original size:18 final size:18
Alignment explanation
Indices: 23311--23345 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
23301 CGAGGAGGAG
23311 AAGGAGAAGGAGAAGGGA
1 AAGGAGAAGGAGAAGGGA
23329 AAGGAGAAGGAGAAGGG
1 AAGGAGAAGGAGAAGGG
23346 TGAGGGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (18 bp):
AAGGAGAAGGAGAAGGGA
Left flanking sequence: Indices 22811 -- 23310
ACATGGCCATCATGAACTTGAAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGGCGCTG
CACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGGCGGGTGCTGCAGTTGGCCACGTT
CCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCACTGGG
GCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACCCCCGTG
GAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAGGCGGA
GGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCGCAGGAGAAGC
CCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACGCCGGCGGACACCAAG
GGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGGAGGAG
Right flanking sequence: Indices 23346 -- 23845
TGAGGGAGAGGACAAGGACAAGGGCGAGGACAAGGGCGAGGACAAGGACAAGGGCGAGGACAAGC
CTGAGAAGGGCGAAGAGCCTGAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAAGACAAG
CCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTCGACGTC
GGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCATGGCAC
TCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGGC
CGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTACCTGGA
CTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACATGCGCC
AGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGC
Found at i:23362 original size:18 final size:18
Alignment explanation
Indices: 23331--23404 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 18
23321 AGAAGGGAAA
* *
23331 GGAGAAGGAGAAGGGTGAG
1 GGAG-AGGACAAGGGCGAG
* *
23350 GGAGAGGACAAGGACAAG
1 GGAGAGGACAAGGGCGAG
*
23368 GGCGAGGACAAGGGCGA-
1 GGAGAGGACAAGGGCGAG
*
23385 GGACAAGGACAAGGGCGAG
1 GGA-GAGGACAAGGGCGAG
23404 G
1 G
23405 ACAAGCCTGA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 2 0.05
18 37 0.84
19 5 0.11
ACGTcount: A:0.36, C:0.11, G:0.51, T:0.01
Consensus pattern (18 bp):
GGAGAGGACAAGGGCGAG
Left flanking sequence: Indices 22831 -- 23330
AAGCGGGTGGAGCACGTGACGGTGCTTGTCAACATCGGGGCGCTGCACCGCGGGTACGTGGCGGT
GAAGCTCACGCTGCCGCTGGGGCGGGTGCTGCAGTTGGCCACGTTCCGCGGCAGCGACAAGAAGG
GCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCACTGGGGCGAGGACGGGGTGGGCGAG
TGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACCCCCGTGGAGGTGGAGTTGGAGAACTG
GCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAGGCGGAGGAGTTTGAGTTTGGCCGCG
ACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCGCAGGAGAAGCCCGAGGTGACGGAGACCGCG
GAGGCGAGCCCGGTGGAGACCCACGACACGCCGGCGGACACCAAGGGGAAGCCCGAGGTGAACCA
CCCGACGGCGAAGCCCGAGGAGGAGAAGGAGAAGGAGAAGGGAAA
Right flanking sequence: Indices 23405 -- 23904
ACAAGCCTGAGAAGGGCGAAGAGCCTGAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAA
GACAAGCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTC
GACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCA
TGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGC
TCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTA
CCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACA
TGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCCACGCAGGGCGAG
GAGATGTTCTCGATTGGCGGCGACGACGACGAGCCGCCGGCGAGC
Found at i:23387 original size:30 final size:30
Alignment explanation
Indices: 23348--23409 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
23338 GAGAAGGGTG
23348 AGGGAGAGGACAAGGACAAGGGCGAGGACA
1 AGGGAGAGGACAAGGACAAGGGCGAGGACA
*
23378 AGGGCGAGGACAAGGACAAGGGCGAGGACA
1 AGGGAGAGGACAAGGACAAGGGCGAGGACA
23408 AG
1 AG
23410 CCTGAGAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.15, G:0.47, T:0.00
Consensus pattern (30 bp):
AGGGAGAGGACAAGGACAAGGGCGAGGACA
Left flanking sequence: Indices 22848 -- 23347
GACGGTGCTTGTCAACATCGGGGCGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGC
TGGGGCGGGTGCTGCAGTTGGCCACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCG
TGGACGTTCATGAGCGTGGTGCACTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGAC
GGCGGACGACCTGAAGAACACCCCCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGG
GCGAGAGCGACGACGCCAAGAAGGCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGC
CGGGTCAAGTTGGCAGCGCAGGAGAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGA
GACCCACGACACGCCGGCGGACACCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCG
AGGAGGAGAAGGAGAAGGAGAAGGGAAAGGAGAAGGAGAAGGGTG
Right flanking sequence: Indices 23410 -- 23909
CCTGAGAAGGGCGAAGAGCCTGAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAAGACAA
GCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTCGACGT
CGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCATGGCA
CTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGG
CCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTACCTGG
ACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACATGCGC
CAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCCACGCAGGGCGAGGAGAT
GTTCTCGATTGGCGGCGACGACGACGAGCCGCCGGCGAGCCCGCA
Found at i:23405 original size:18 final size:18
Alignment explanation
Indices: 23372--23409 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
23362 GACAAGGGCG
23372 AGGACAAGGGCGAGGACA
1 AGGACAAGGGCGAGGACA
23390 AGGACAAGGGCGAGGACA
1 AGGACAAGGGCGAGGACA
23408 AG
1 AG
23410 CCTGAGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.45, T:0.00
Consensus pattern (18 bp):
AGGACAAGGGCGAGGACA
Left flanking sequence: Indices 22872 -- 23371
GCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGGCGGGTGCTGCAGTTGGCCA
CGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATGAGCGTGGTGCAC
TGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCTGAAGAACACCCC
CGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACGACGCCAAGAAGG
CGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTGGCAGCGCAGGAG
AAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACACGCCGGCGGACAC
CAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGGAGGAGAAGGAGAAGGAGAAGG
GAAAGGAGAAGGAGAAGGGTGAGGGAGAGGACAAGGACAAGGGCG
Right flanking sequence: Indices 23410 -- 23909
CCTGAGAAGGGCGAAGAGCCTGAGGACAAGCCTGACAAGCCTGAGGACAAGGAGGGCGAAGACAA
GCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCCGCCGCAGCCCTCGACGT
CGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCATGGCA
CTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGG
CCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTACCTGG
ACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACATGCGC
CAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCCACGCAGGGCGAGGAGAT
GTTCTCGATTGGCGGCGACGACGACGAGCCGCCGGCGAGCCCGCA
Found at i:23409 original size:12 final size:12
Alignment explanation
Indices: 23360--23392 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
23350 GGAGAGGACA
23360 AGGACAAGGGCG
1 AGGACAAGGGCG
23372 AGGACAAGGGCG
1 AGGACAAGGGCG
23384 AGGACAAGG
1 AGGACAAGG
23393 ACAAGGGCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.15, G:0.48, T:0.00
Consensus pattern (12 bp):
AGGACAAGGGCG
Left flanking sequence: Indices 22860 -- 23359
CAACATCGGGGCGCTGCACCGCGGGTACGTGGCGGTGAAGCTCACGCTGCCGCTGGGGCGGGTGC
TGCAGTTGGCCACGTTCCGCGGCAGCGACAAGAAGGGCACCGGGTTCCCTGCGTGGACGTTCATG
AGCGTGGTGCACTGGGGCGAGGACGGGGTGGGCGAGTGGGAGCTCGAGGTGACGGCGGACGACCT
GAAGAACACCCCCGTGGAGGTGGAGTTGGAGAACTGGCAGTTGCGGTTGTGGGGCGAGAGCGACG
ACGCCAAGAAGGCGGAGGAGTTTGAGTTTGGCCGCGACTACGCCGAGGTGCGCCGGGTCAAGTTG
GCAGCGCAGGAGAAGCCCGAGGTGACGGAGACCGCGGAGGCGAGCCCGGTGGAGACCCACGACAC
GCCGGCGGACACCAAGGGGAAGCCCGAGGTGAACCACCCGACGGCGAAGCCCGAGGAGGAGAAGG
AGAAGGAGAAGGGAAAGGAGAAGGAGAAGGGTGAGGGAGAGGACA
Right flanking sequence: Indices 23393 -- 23892
ACAAGGGCGAGGACAAGCCTGAGAAGGGCGAAGAGCCTGAGGACAAGCCTGACAAGCCTGAGGAC
AAGGAGGGCGAAGACAAGCCTGACAAGCCCGACTCCGACTCCGACTCGGACGACGAGGACCAGCC
GCCGCAGCCCTCGACGTCGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCG
GGCAGTACTTCATGGCACTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCAC
AAGACCCCGGGCTCGGGCCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCC
CGGCGAGGACTACCTGGACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACA
ACGCCCGCGACATGCGCCAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCC
ACGCAGGGCGAGGAGATGTTCTCGATTGGCGGCGACGACGACGAG
Found at i:24068 original size:22 final size:24
Alignment explanation
Indices: 24040--24086 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
24030 TGAATAGAAC
24040 AGAGAA-GAGT-AGGTGGGTTGAT
1 AGAGAAGGAGTAAGGTGGGTTGAT
24062 AGAGAAGGAGTAAAGGTGGGTTGAT
1 AGAGAAGGAGT-AAGGTGGGTTGAT
24087 GGAATGGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 4 0.18
25 12 0.55
ACGTcount: A:0.34, C:0.00, G:0.45, T:0.21
Consensus pattern (24 bp):
AGAGAAGGAGTAAGGTGGGTTGAT
Left flanking sequence: Indices 23540 -- 24039
CGGACGCCGGCGACGGCTCCAACAAACAGCTGACCGTCGACCACACCGGGCAGTACTTCATGGCA
CTCGCCGTGGTGGGGTTCATCGTGGTGGTGGCGTTCATGAAGTTCCACAAGACCCCGGGCTCGGG
CCGGAGAAAGCGCCGGCGCCGCGACGACTACGAGTTCGACATCATCCCCGGCGAGGACTACCTGG
ACTCCGAGGACGACGGGTCGGACGACCTGGTCAACCTCCACCAGCACAACGCCCGCGACATGCGC
CAGGACGAGCAGCGGCTCTACGACGAGCTCAACGCGGACGTGTTGCCCACGCAGGGCGAGGAGAT
GTTCTCGATTGGCGGCGACGACGACGAGCCGCCGGCGAGCCCGCACAAGAAGGACGCGCCCGGGT
CTCCCGAGACCCCCGACGACTCCCACAACGGCGACGACCTGAAGCCCACGAGCCGGCTTCTTCTG
GATGTACAATAGACGGTTAATAGATACGTGACGGTTGAATAGAAC
Right flanking sequence: Indices 24087 -- 24586
GGAATGGTAGACAAGTGAAAGTATTGCTAGTGTGAATGAGCTGGGTTAGACTTGATTCTTTTACC
TACATTGAATAGAAACAGAGAAGAGAAAGGTGATTGATAGAATGGTGGACGAAGTGAAATATGGC
TAGTGTGAATGTAGCGAGAGCTGGGTTTTTGTAGAATTGGTAGTTTTACCTACATTGCATTTAAC
AGTTGCATTCCTAGAAAATAGAACAATTGACCATGCCAAAAGGTCATTGCACCGCTAAAACACAG
TAAATGGCCAATTCGAAGTCGACGATTTTTTACACCGTCGACACCCATTTCCTACACCACAGACA
CCACCCCCTAACTACCACCACCACGACACGCGCGTACAGCAACCGCCTGTCGCCTGCGTCGCAGC
CGTTTCCATCGCCTTCTACATATGCTAACAACTAAAAACCAAACCACCAAAATCCCACCACACAA
ACACCATTGCCACAAACACAACCCTAACATAAACAGCCCTACAAT
Found at i:25316 original size:34 final size:35
Alignment explanation
Indices: 25273--25347 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 35
25263 GACTCACAAA
*
25273 GTGTCTACGTACTTTTCCACGATTGACAACT-TAG
1 GTGTCTACGTACTTTTCCACGATTGACAACTGAAG
* *
25307 GTGTCTACGTGCTTTTTCACGATTGACAACTGAAG
1 GTGTCTACGTACTTTTCCACGATTGACAACTGAAG
25342 GTGTCT
1 GTGTCT
25348 TAATGTCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
34 29 0.78
35 8 0.22
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (35 bp):
GTGTCTACGTACTTTTCCACGATTGACAACTGAAG
Left flanking sequence: Indices 24773 -- 25272
TGGTACCGTCGGGCGAAGCGTTTGCCAGCCGGAACCGGTTCTTATGGCCACTCCAGGAGGTCGTG
AAGATGATGAAGCTAAGTTTACTTCTTTCCCAGTCCGATACGACTATGACGACAGGGTTGAAAAC
CGCGGTCGGTGGATCCGCTCTGTTTGCCCACGAGGCAGACAGAGTCACCGCTGCTTATACTTGCC
AGTATTTACGTTTCTGATTCACATTGTCCCACGGGAGACAGCCCGCTCTCGCCGAGCGCGGGGTG
ACTCCGGTGTCGACAGTGCCGAGATTTGCCAGTGATGAGATTTCCATAACATTCGCAGTTTCCCC
GGTAGTGCACGAACGAACCCATGTTAGTGTAACGGTGACCGCGCATTTGACCTTCCATGGATGTC
TGAGGCCTAGTATCTCGAGTAGTGTAGATTCCTGAGTAGCTTCTTTTCGACACCCGAGTTCCAAG
TTCTTCTGTTCAGAAGGATGGGGGTGGACCTTTACGACTCACAAA
Right flanking sequence: Indices 25348 -- 25847
TAATGTCTTCTCTACACGATGAGACGTGTCCACTCAATTTCTTACAACCAGCGAAGAGCTGATAG
AAAGATAGCTAGCTGGATGCGCTATCGCTTCTTCGTGGCTCGACACAGGGTTTACTCAAATGGTG
TGCTTTTAACATACCTTTGGCACCACTTTTGGTCGTATCAAACAGGCCATAATACCAGTAGAACC
CTGTGAATCGGTAGAACTCCAAGCCTATAGTAGTACCCGTCTCAGCTGGGGGGCCGCAAGCGGCG
CCCCCCAGACCCCCCAACGCTTGTAACTTTGAGTCTTCAATTGCTTAGAATCCTATTTATCGGTG
GTGCAAACGGATGGTTGCAAACGATGGCTGCGAACTGGCCACATTACGATCAACAAACTATCGGT
GGAACTCCATCGCCAACAGGCGAGACCCCCAACGCTTGTAACTTTCATCGCGTCAATTGATTGCT
TATAATTCTATCTATCGGAAGTACTTGCTAACGGAAACGGGCTGC
Found at i:28715 original size:14 final size:14
Alignment explanation
Indices: 28682--28754 Score: 130
Period size: 14 Copynumber: 5.3 Consensus size: 14
28672 TAGAGTACTA
28682 AAAAGGAGAGTACG
1 AAAAGGAGAGTACG
*
28696 -AAAGGAGAGCACG
1 AAAAGGAGAGTACG
28709 AAAAGGAGAGTACG
1 AAAAGGAGAGTACG
28723 AAAAGGAGAGTACG
1 AAAAGGAGAGTACG
28737 AAAAGGAGAGTACG
1 AAAAGGAGAGTACG
28751 AAAA
1 AAAA
28755 AGTATCAAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
13 12 0.21
14 44 0.79
ACGTcount: A:0.52, C:0.08, G:0.34, T:0.05
Consensus pattern (14 bp):
AAAAGGAGAGTACG
Left flanking sequence: Indices 28182 -- 28681
GGGGGGAGCTGGAGAGAGACGAAAGCAGCGGTGGGGTGGTTAGGGCTACCGGAGCACCACCTTTC
CGTTCGTCCCACCCGTCGGTTGACCGGAACGGTTGAGGGCCCCGTCGGTTGCCCTTGCCAGACAC
GCCGCACGTGATAATACACCATAGACGAGGCGACGAGGTGACGAGATGACTCATGACTCAAGGTG
GGGAACAAGCATGGAAGGTGTTTTCTGTGCGATTGCGGTGCGTGGTGGTGCGTAGGGCGGTAGGG
CGGTGGGTGGTGGGTGCTACGGTGGCTGGCTACGGGGTGGGACGAGTGTGCCCCACCCCGTTCCA
TGGGTAACCCGGCGACCTGTCAAAGTGAAAAAGTAGTCGTGTGGCGGACGAAATGTGGGGTACGG
GCTACCGGGATCAGGGGTGGTTCAACAGGTGGCCTGGTTTACGAGCTCGGAGTACGGTGGGCTAA
CCAGTGGGGGGAAAAAGAAGAAGTAGTCAGAAGAGTAGAGTACTA
Right flanking sequence: Indices 28755 -- 29254
AGTATCAAAAAGAGTAGAAGTACTAAAGAGTAGAAGTACTAAAGAGTAGAAGTCCAAAAATTAGA
AGTGCTAAAAAGTAGAAGTGAAAGAGAAGTTAGGTAGAGGACTGAACACAGTCAATAACACAAAT
GGCTGTCAGCATGTGTCAGTCTCACCTTAATTCATCTCGCTATCCGCTACTCCCGTGGTACCCTC
GGCAATACCGTCACATGGGCGATCCCCCAAACAAGCAGAAATTCTCGGCAATCCTCAGGGTCCGC
CGAGTGACACCTGTGAAACACAAGGGCGGCCGCCGGCAGTCTATCCCTCTATCCGAGATCCCCAC
AAATCGCATGTCTCATAACGTCACTGATAAGGTATTTTGAGCCTTGTTTCTGGTTGGGGGATCCG
GGTACCCGAGATGAGCACCAGGAAGCCTGATTGATAAAGCAACGACGGCGTCTAGATTTAGTTTA
GTCTTCTGTGGGTGGTGCAGCGAGGCACGGTGGCCACTGGACACG
Found at i:28742 original size:42 final size:42
Alignment explanation
Indices: 28673--28754 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
28663 TCAGAAGAGT
28673 AGAGTACTAAAAAGGAGAGTACGAAAGGAGAGCACGAAAAGG
1 AGAGTACTAAAAAGGAGAGTACGAAAGGAGAGCACGAAAAGG
* *
28715 AGAGTAC-GAAAAGGAGAGTACGAAAAGGAGAGTACGAAAA
1 AGAGTACTAAAAAGGAGAGTACG-AAAGGAGAGCACGAAAA
28755 AGTATCAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 14 0.38
42 23 0.62
ACGTcount: A:0.51, C:0.09, G:0.33, T:0.07
Consensus pattern (42 bp):
AGAGTACTAAAAAGGAGAGTACGAAAGGAGAGCACGAAAAGG
Left flanking sequence: Indices 28173 -- 28672
GACGGCGACGGGGGGAGCTGGAGAGAGACGAAAGCAGCGGTGGGGTGGTTAGGGCTACCGGAGCA
CCACCTTTCCGTTCGTCCCACCCGTCGGTTGACCGGAACGGTTGAGGGCCCCGTCGGTTGCCCTT
GCCAGACACGCCGCACGTGATAATACACCATAGACGAGGCGACGAGGTGACGAGATGACTCATGA
CTCAAGGTGGGGAACAAGCATGGAAGGTGTTTTCTGTGCGATTGCGGTGCGTGGTGGTGCGTAGG
GCGGTAGGGCGGTGGGTGGTGGGTGCTACGGTGGCTGGCTACGGGGTGGGACGAGTGTGCCCCAC
CCCGTTCCATGGGTAACCCGGCGACCTGTCAAAGTGAAAAAGTAGTCGTGTGGCGGACGAAATGT
GGGGTACGGGCTACCGGGATCAGGGGTGGTTCAACAGGTGGCCTGGTTTACGAGCTCGGAGTACG
GTGGGCTAACCAGTGGGGGGAAAAAGAAGAAGTAGTCAGAAGAGT
Right flanking sequence: Indices 28755 -- 29254
AGTATCAAAAAGAGTAGAAGTACTAAAGAGTAGAAGTACTAAAGAGTAGAAGTCCAAAAATTAGA
AGTGCTAAAAAGTAGAAGTGAAAGAGAAGTTAGGTAGAGGACTGAACACAGTCAATAACACAAAT
GGCTGTCAGCATGTGTCAGTCTCACCTTAATTCATCTCGCTATCCGCTACTCCCGTGGTACCCTC
GGCAATACCGTCACATGGGCGATCCCCCAAACAAGCAGAAATTCTCGGCAATCCTCAGGGTCCGC
CGAGTGACACCTGTGAAACACAAGGGCGGCCGCCGGCAGTCTATCCCTCTATCCGAGATCCCCAC
AAATCGCATGTCTCATAACGTCACTGATAAGGTATTTTGAGCCTTGTTTCTGGTTGGGGGATCCG
GGTACCCGAGATGAGCACCAGGAAGCCTGATTGATAAAGCAACGACGGCGTCTAGATTTAGTTTA
GTCTTCTGTGGGTGGTGCAGCGAGGCACGGTGGCCACTGGACACG
Found at i:28784 original size:16 final size:16
Alignment explanation
Indices: 28763--28838 Score: 100
Period size: 16 Copynumber: 4.8 Consensus size: 16
28753 AAAGTATCAA
28763 AAAGAGTAGAAGTACT
1 AAAGAGTAGAAGTACT
28779 AAAGAGTAGAAGTACT
1 AAAGAGTAGAAGTACT
*
28795 AAAGAGTAGAAGT-CC
1 AAAGAGTAGAAGTACT
* * *
28810 AAAAATTAGAAGTGCT
1 AAAGAGTAGAAGTACT
*
28826 AAAAAGTAGAAGT
1 AAAGAGTAGAAGT
28839 GAAAGAGAAG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
15 12 0.22
16 42 0.78
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (16 bp):
AAAGAGTAGAAGTACT
Left flanking sequence: Indices 28263 -- 28762
CGGTTGACCGGAACGGTTGAGGGCCCCGTCGGTTGCCCTTGCCAGACACGCCGCACGTGATAATA
CACCATAGACGAGGCGACGAGGTGACGAGATGACTCATGACTCAAGGTGGGGAACAAGCATGGAA
GGTGTTTTCTGTGCGATTGCGGTGCGTGGTGGTGCGTAGGGCGGTAGGGCGGTGGGTGGTGGGTG
CTACGGTGGCTGGCTACGGGGTGGGACGAGTGTGCCCCACCCCGTTCCATGGGTAACCCGGCGAC
CTGTCAAAGTGAAAAAGTAGTCGTGTGGCGGACGAAATGTGGGGTACGGGCTACCGGGATCAGGG
GTGGTTCAACAGGTGGCCTGGTTTACGAGCTCGGAGTACGGTGGGCTAACCAGTGGGGGGAAAAA
GAAGAAGTAGTCAGAAGAGTAGAGTACTAAAAAGGAGAGTACGAAAGGAGAGCACGAAAAGGAGA
GTACGAAAAGGAGAGTACGAAAAGGAGAGTACGAAAAAGTATCAA
Right flanking sequence: Indices 28839 -- 29338
GAAAGAGAAGTTAGGTAGAGGACTGAACACAGTCAATAACACAAATGGCTGTCAGCATGTGTCAG
TCTCACCTTAATTCATCTCGCTATCCGCTACTCCCGTGGTACCCTCGGCAATACCGTCACATGGG
CGATCCCCCAAACAAGCAGAAATTCTCGGCAATCCTCAGGGTCCGCCGAGTGACACCTGTGAAAC
ACAAGGGCGGCCGCCGGCAGTCTATCCCTCTATCCGAGATCCCCACAAATCGCATGTCTCATAAC
GTCACTGATAAGGTATTTTGAGCCTTGTTTCTGGTTGGGGGATCCGGGTACCCGAGATGAGCACC
AGGAAGCCTGATTGATAAAGCAACGACGGCGTCTAGATTTAGTTTAGTCTTCTGTGGGTGGTGCA
GCGAGGCACGGTGGCCACTGGACACGACCACGGCACGGCTATAGCAAGCGCGGCTGGAACCAGGG
ACAGCCACCACAGGGCCGGGGGATCAGCGAGTCAGCTCTGTGACA
Found at i:28828 original size:31 final size:32
Alignment explanation
Indices: 28763--28838 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 32
28753 AAAGTATCAA
* *
28763 AAAGAGTAGAAGTACTAAAGAGTAGAAGTACT
1 AAAGAGTAGAAGTACCAAAAAGTAGAAGTACT
* *
28795 AAAGAGTAGAAGT-CCAAAAATTAGAAGTGCT
1 AAAGAGTAGAAGTACCAAAAAGTAGAAGTACT
*
28826 AAAAAGTAGAAGT
1 AAAGAGTAGAAGT
28839 GAAAGAGAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 26 0.67
32 13 0.33
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (32 bp):
AAAGAGTAGAAGTACCAAAAAGTAGAAGTACT
Left flanking sequence: Indices 28263 -- 28762
CGGTTGACCGGAACGGTTGAGGGCCCCGTCGGTTGCCCTTGCCAGACACGCCGCACGTGATAATA
CACCATAGACGAGGCGACGAGGTGACGAGATGACTCATGACTCAAGGTGGGGAACAAGCATGGAA
GGTGTTTTCTGTGCGATTGCGGTGCGTGGTGGTGCGTAGGGCGGTAGGGCGGTGGGTGGTGGGTG
CTACGGTGGCTGGCTACGGGGTGGGACGAGTGTGCCCCACCCCGTTCCATGGGTAACCCGGCGAC
CTGTCAAAGTGAAAAAGTAGTCGTGTGGCGGACGAAATGTGGGGTACGGGCTACCGGGATCAGGG
GTGGTTCAACAGGTGGCCTGGTTTACGAGCTCGGAGTACGGTGGGCTAACCAGTGGGGGGAAAAA
GAAGAAGTAGTCAGAAGAGTAGAGTACTAAAAAGGAGAGTACGAAAGGAGAGCACGAAAAGGAGA
GTACGAAAAGGAGAGTACGAAAAGGAGAGTACGAAAAAGTATCAA
Right flanking sequence: Indices 28839 -- 29338
GAAAGAGAAGTTAGGTAGAGGACTGAACACAGTCAATAACACAAATGGCTGTCAGCATGTGTCAG
TCTCACCTTAATTCATCTCGCTATCCGCTACTCCCGTGGTACCCTCGGCAATACCGTCACATGGG
CGATCCCCCAAACAAGCAGAAATTCTCGGCAATCCTCAGGGTCCGCCGAGTGACACCTGTGAAAC
ACAAGGGCGGCCGCCGGCAGTCTATCCCTCTATCCGAGATCCCCACAAATCGCATGTCTCATAAC
GTCACTGATAAGGTATTTTGAGCCTTGTTTCTGGTTGGGGGATCCGGGTACCCGAGATGAGCACC
AGGAAGCCTGATTGATAAAGCAACGACGGCGTCTAGATTTAGTTTAGTCTTCTGTGGGTGGTGCA
GCGAGGCACGGTGGCCACTGGACACGACCACGGCACGGCTATAGCAAGCGCGGCTGGAACCAGGG
ACAGCCACCACAGGGCCGGGGGATCAGCGAGTCAGCTCTGTGACA
Found at i:29351 original size:15 final size:15
Alignment explanation
Indices: 29331--29378 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
29321 CGAGTCAGCT
*
29331 CTGTGACAGCGACAC
1 CTGTGACAGCGACCC
29346 CTGTGACAGCGACCC
1 CTGTGACAGCGACCC
*
29361 CTGTGACGGCGACCC
1 CTGTGACAGCGACCC
29376 CTG
1 CTG
29379 CGACCGCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.19, C:0.38, G:0.29, T:0.15
Consensus pattern (15 bp):
CTGTGACAGCGACCC
Left flanking sequence: Indices 28831 -- 29330
GTAGAAGTGAAAGAGAAGTTAGGTAGAGGACTGAACACAGTCAATAACACAAATGGCTGTCAGCA
TGTGTCAGTCTCACCTTAATTCATCTCGCTATCCGCTACTCCCGTGGTACCCTCGGCAATACCGT
CACATGGGCGATCCCCCAAACAAGCAGAAATTCTCGGCAATCCTCAGGGTCCGCCGAGTGACACC
TGTGAAACACAAGGGCGGCCGCCGGCAGTCTATCCCTCTATCCGAGATCCCCACAAATCGCATGT
CTCATAACGTCACTGATAAGGTATTTTGAGCCTTGTTTCTGGTTGGGGGATCCGGGTACCCGAGA
TGAGCACCAGGAAGCCTGATTGATAAAGCAACGACGGCGTCTAGATTTAGTTTAGTCTTCTGTGG
GTGGTGCAGCGAGGCACGGTGGCCACTGGACACGACCACGGCACGGCTATAGCAAGCGCGGCTGG
AACCAGGGACAGCCACCACAGGGCCGGGGGATCAGCGAGTCAGCT
Right flanking sequence: Indices 29379 -- 29878
CGACCGCTACAACCCCTGACGATTAATTACATCCCTGGGGTTGTGTCATTGTAGCCAGCTATTGC
CGTGACTAGCGTCATAACCCCGCTGCATACACACCCAACGGCTGTAGTATGTGTCTCGGGCAGGG
CACTTAGGCAGGAGGCCATTGTAGTCAGGCAGGTCGAGAACGACACAGGAACAACAACGACCGTA
ACAACCAACAACACGAAAACAACCAACCACGGAACACCAGCCACGGCCCAGATTGTTCCTCACCC
CACTCAGGCACCGCCACCCGAACGTCTGATCCGACAGGTCGTGCCACCCGGCTATACTCACCCAC
GAGCCGGGTCGAACTGACCGTTTCAGACACCGCCGTGGTCCTGTCGGAGCATTGTTTGCTCAGAC
ACCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAAAAAACATGCACGGTGGCTGTAATCGAGTC
GAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTGGGCCACCAA
Found at i:30071 original size:14 final size:15
Alignment explanation
Indices: 30052--30081 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
30042 TGTTCCTGTG
30052 TGTCGTCTGTG-CTC
1 TGTCGTCTGTGTCTC
30066 TGTCGTCTGTGTCTC
1 TGTCGTCTGTGTCTC
30081 T
1 T
30082 ATCTCCTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.00, C:0.27, G:0.27, T:0.47
Consensus pattern (15 bp):
TGTCGTCTGTGTCTC
Left flanking sequence: Indices 29552 -- 30051
CACAGGAACAACAACGACCGTAACAACCAACAACACGAAAACAACCAACCACGGAACACCAGCCA
CGGCCCAGATTGTTCCTCACCCCACTCAGGCACCGCCACCCGAACGTCTGATCCGACAGGTCGTG
CCACCCGGCTATACTCACCCACGAGCCGGGTCGAACTGACCGTTTCAGACACCGCCGTGGTCCTG
TCGGAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAAAAAACAT
GCACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTGGGCCACC
AATGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGTCGTTGGTTCGTGGTT
CTCCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACCGTTCGTATCTGTACCTCTACGCGG
CCCATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTG
Right flanking sequence: Indices 30082 -- 30581
ATCTCCTCTATCTCCTCTGTGTCCTCTTTCTCTTGCGTTGTCTCTCTATTGTCTTCTCTTCTCTG
TTCCCATCTCTCTCACTCTCCATCTACGTCTTCCGATCCACCTCTTCGTACCTCGCGACGCCTCG
GGAAAACCTAACCCAAAACCACCACTCACCACCACTTTCCCACCACCTTCCCACCACCTTCCACC
ACCTCTCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGT
TCCTTTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAAT
TCCCCGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTAC
TACTACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCA
GCTCACCCCACAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCC
Found at i:30256 original size:11 final size:11
Alignment explanation
Indices: 30240--30280 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
30230 CCACCACTCA
*
30240 CCACCACTTTC
1 CCACCACCTTC
30251 CCACCACCTTC
1 CCACCACCTTC
30262 CCACCACCTT-
1 CCACCACCTTC
30272 CCACCACCT
1 CCACCACCT
30281 CTCTCTCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.20, C:0.61, G:0.00, T:0.20
Consensus pattern (11 bp):
CCACCACCTTC
Left flanking sequence: Indices 29740 -- 30239
GGTCCTGTCGGAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAA
AAAACATGCACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTG
GGCCACCAATGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGTCGTTGGTT
CGTGGTTCTCCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACCGTTCGTATCTGTACCTC
TACGCGGCCCATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTGTGTCGTCTGTGCT
CTGTCGTCTGTGTCTCTATCTCCTCTATCTCCTCTGTGTCCTCTTTCTCTTGCGTTGTCTCTCTA
TTGTCTTCTCTTCTCTGTTCCCATCTCTCTCACTCTCCATCTACGTCTTCCGATCCACCTCTTCG
TACCTCGCGACGCCTCGGGAAAACCTAACCCAAAACCACCACTCA
Right flanking sequence: Indices 30281 -- 30780
CTCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCCT
TTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCCC
CGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTACT
ACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCTC
ACCCCACAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGAC
GACGCTGGCGACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCTCCCGACT
ACTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGTGCCGGGCCAAGCACCGGGC
CAGCCGGGCCAAGCACCAGGCCAGCCTCCGCTCGGCCAGCCCGTG
Found at i:30268 original size:22 final size:21
Alignment explanation
Indices: 30240--30280 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
30230 CCACCACTCA
*
30240 CCACCACTTTCCCACCACCTTC
1 CCACCACCTT-CCACCACCTTC
30262 CCACCACCTTCCACCACCT
1 CCACCACCTTCCACCACCT
30281 CTCTCTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.20, C:0.61, G:0.00, T:0.20
Consensus pattern (21 bp):
CCACCACCTTCCACCACCTTC
Left flanking sequence: Indices 29740 -- 30239
GGTCCTGTCGGAGCATTGTTTGCTCAGACACCGGAGTTGGGTGGATTTAACCCCGAAACAGGCAA
AAAACATGCACGGTGGCTGTAATCGAGTCGAGATTAGCGCCACAGGGGATCTACGGTCTGGTTTG
GGCCACCAATGTCTACATGCGGCCGCCGTGACCACCGTGACCGGATGGGTTGATTGTCGTTGGTT
CGTGGTTCTCCACATTTTGGTGTGCTAACGCACTACGTCATTGTCACCGTTCGTATCTGTACCTC
TACGCGGCCCATTCGCTCACCCTGTGGTTCGGTGTAGTGCTCTGTTCCTGTGTGTCGTCTGTGCT
CTGTCGTCTGTGTCTCTATCTCCTCTATCTCCTCTGTGTCCTCTTTCTCTTGCGTTGTCTCTCTA
TTGTCTTCTCTTCTCTGTTCCCATCTCTCTCACTCTCCATCTACGTCTTCCGATCCACCTCTTCG
TACCTCGCGACGCCTCGGGAAAACCTAACCCAAAACCACCACTCA
Right flanking sequence: Indices 30281 -- 30780
CTCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCCT
TTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCCC
CGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTACT
ACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCTC
ACCCCACAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGAC
GACGCTGGCGACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCTCCCGACT
ACTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGTGCCGGGCCAAGCACCGGGC
CAGCCGGGCCAAGCACCAGGCCAGCCTCCGCTCGGCCAGCCCGTG
Found at i:30733 original size:12 final size:12
Alignment explanation
Indices: 30718--30758 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
30708 GGTGCCTGTG
30718 CCGGGCCAAGCA
1 CCGGGCCAAGCA
30730 CCGGGCC-AG--
1 CCGGGCCAAGCA
30739 CCGGGCCAAGCA
1 CCGGGCCAAGCA
*
30751 CCAGGCCA
1 CCGGGCCA
30759 GCCTCCGCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
9 7 0.28
10 2 0.08
11 2 0.08
12 14 0.56
ACGTcount: A:0.22, C:0.44, G:0.34, T:0.00
Consensus pattern (12 bp):
CCGGGCCAAGCA
Left flanking sequence: Indices 30218 -- 30717
CCTAACCCAAAACCACCACTCACCACCACTTTCCCACCACCTTCCCACCACCTTCCACCACCTCT
CTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCCTTT
GTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCCCCG
AGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTACTAC
AACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCTCAC
CCCACAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGACGA
CGCTGGCGACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCTCCCGACTAC
TTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGTG
Right flanking sequence: Indices 30759 -- 31258
GCCTCCGCTCGGCCAGCCCGTGCCCGGCCAACCAGCACCGCTACCCGGCCAGCAAGCACCGCTAC
CCGGCCAGCAAGCACCGCTACCAGGCCACCACATCCCGCACCCGCCGCCCCCGGTCAACGGACAC
ACCCCCTTCGGAGCGTTCGCTGGCCAGCAGCTCGCGTCGCCCTCGGACAAAAAACGCCTGTTGCT
GCTGCTGGCACCGTCCCAGCCGTCGCGTCTGGCCGCCACCTACCCGCGCAAGCGCGCCGTGACCG
CGTGTGACACCTGTAGACTCAAGAAGGTCAAGTGCGACAACGTGCGCCCGCGGTGCGGGCTGTGC
ACCAAGAACGGGATCACCAACTGCCACTACCGCACCGACGACCTCCAGAAGGACTACTCGCTGTA
CGACCCTGCGTCGCTCAACATCCTCACCAAGCTCGACGTCATCTTGCGCGACTTGAGCGAGCTCA
AGGGGGGCCCCGTGGGCTCCGCACCGGCCGCGAACTGCTTCCGGT
Found at i:30741 original size:21 final size:21
Alignment explanation
Indices: 30717--30761 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
30707 CGGTGCCTGT
*
30717 GCCGGGCCAAGCACCGGGCCA
1 GCCGGGCCAAGCACCAGGCCA
30738 GCCGGGCCAAGCACCAGGCCA
1 GCCGGGCCAAGCACCAGGCCA
30759 GCC
1 GCC
30762 TCCGCTCGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.44, G:0.36, T:0.00
Consensus pattern (21 bp):
GCCGGGCCAAGCACCAGGCCA
Left flanking sequence: Indices 30217 -- 30716
ACCTAACCCAAAACCACCACTCACCACCACTTTCCCACCACCTTCCCACCACCTTCCACCACCTC
TCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCCTT
TGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCCCC
GAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTACTA
CAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCTCA
CCCCACAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGACG
ACGCTGGCGACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCTCCCGACTA
CTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGT
Right flanking sequence: Indices 30762 -- 31261
TCCGCTCGGCCAGCCCGTGCCCGGCCAACCAGCACCGCTACCCGGCCAGCAAGCACCGCTACCCG
GCCAGCAAGCACCGCTACCAGGCCACCACATCCCGCACCCGCCGCCCCCGGTCAACGGACACACC
CCCTTCGGAGCGTTCGCTGGCCAGCAGCTCGCGTCGCCCTCGGACAAAAAACGCCTGTTGCTGCT
GCTGGCACCGTCCCAGCCGTCGCGTCTGGCCGCCACCTACCCGCGCAAGCGCGCCGTGACCGCGT
GTGACACCTGTAGACTCAAGAAGGTCAAGTGCGACAACGTGCGCCCGCGGTGCGGGCTGTGCACC
AAGAACGGGATCACCAACTGCCACTACCGCACCGACGACCTCCAGAAGGACTACTCGCTGTACGA
CCCTGCGTCGCTCAACATCCTCACCAAGCTCGACGTCATCTTGCGCGACTTGAGCGAGCTCAAGG
GGGGCCCCGTGGGCTCCGCACCGGCCGCGAACTGCTTCCGGTTCG
Found at i:30806 original size:21 final size:21
Alignment explanation
Indices: 30781--30851 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
30771 CCAGCCCGTG
* *
30781 CCCGGCCAACCAGCACCGCTA
1 CCCGGCCAGCAAGCACCGCTA
30802 CCCGGCCAGCAAGCACCGCTA
1 CCCGGCCAGCAAGCACCGCTA
30823 CCCGGCCAGCAAGCACCGCTA
1 CCCGGCCAGCAAGCACCGCTA
*
30844 CCAGGCCA
1 CCCGGCCA
30852 CCACATCCCG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.24, C:0.49, G:0.23, T:0.04
Consensus pattern (21 bp):
CCCGGCCAGCAAGCACCGCTA
Left flanking sequence: Indices 30281 -- 30780
CTCTCTCTTCCGTGCCCCGCTCTACCCCACGCCCCTACCCCACGTCGTATCCCATGCCCGTTCCT
TTGTCCCTATCCCACCGTTACGACCCCTAGGTGCACCCGACAATATTTTCTGGAGCGAAATTCCC
CGAGACCCATCGAGCACAGGCCACTGACACCACCACGGCCTCCACCATGGACCAGCCGTACTACT
ACAACTACTACCAGGGCCAGCCACCGCCCCAGGGCCCCACGCCCCCGCAACCAGCGCCCCAGCTC
ACCCCACAGGCCCCACCGTCCCAGCCCACCACCCAGCTGCCCAACCAGGCTACCCCGTCGCTGAC
GACGCTGGCGACGCTGGTGAGCTCCCAGGGAGCCCAGCCGCACATGGTGATGATGCCTCCCGACT
ACTTTTTCTACAAGGGCCAGCCCCAGCCCGGCCAGCCGGTGCCTGTGCCGGGCCAAGCACCGGGC
CAGCCGGGCCAAGCACCAGGCCAGCCTCCGCTCGGCCAGCCCGTG
Right flanking sequence: Indices 30852 -- 31351
CCACATCCCGCACCCGCCGCCCCCGGTCAACGGACACACCCCCTTCGGAGCGTTCGCTGGCCAGC
AGCTCGCGTCGCCCTCGGACAAAAAACGCCTGTTGCTGCTGCTGGCACCGTCCCAGCCGTCGCGT
CTGGCCGCCACCTACCCGCGCAAGCGCGCCGTGACCGCGTGTGACACCTGTAGACTCAAGAAGGT
CAAGTGCGACAACGTGCGCCCGCGGTGCGGGCTGTGCACCAAGAACGGGATCACCAACTGCCACT
ACCGCACCGACGACCTCCAGAAGGACTACTCGCTGTACGACCCTGCGTCGCTCAACATCCTCACC
AAGCTCGACGTCATCTTGCGCGACTTGAGCGAGCTCAAGGGGGGCCCCGTGGGCTCCGCACCGGC
CGCGAACTGCTTCCGGTTCGACCGGTGCTTCTGGGACATGCTGTGCACGCTGGTGATGCGGTGGG
AGTGTCTTGGCGACGCCATCAACGTGTCGCCCGGGTACACCGACG
Found at i:33616 original size:20 final size:20
Alignment explanation
Indices: 33561--33659 Score: 144
Period size: 20 Copynumber: 4.8 Consensus size: 20
33551 GAGCAAGGCA
*
33561 AGGGCTGAGACTGTCGAGGCG
1 AGGGCTGAG-CTGTCGAGACG
*
33582 AGGGCTGAGGCTGTCGAAACG
1 AGGGCTGA-GCTGTCGAGACG
*
33603 AGGACTGAGCTGTCGAGACG
1 AGGGCTGAGCTGTCGAGACG
33623 AGGGCTGAGCTGTCGAGACG
1 AGGGCTGAGCTGTCGAGACG
*
33643 AGGGCTGAGCTGCCGAG
1 AGGGCTGAGCTGTCGAG
33660 CCTCGGTTGC
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
20 46 0.65
21 24 0.34
22 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.44, T:0.14
Consensus pattern (20 bp):
AGGGCTGAGCTGTCGAGACG
Left flanking sequence: Indices 33061 -- 33560
GCGGCGGGCGCGCGGGCCAAGATCCTCAAGGTGTTCTTCCAGCAGGTGATCTCGTTGCCCAAGAT
GCACATACCCAAGCTCATGGCGCACCGCCACCCCGGGCTGTGGTTTTTGTTGCGCACGCTGTTCA
TTCTGACGATCAACTTGGTGTTGTTGCACCGCAAGCTCATGGGGATGGCGGAGGACGAGCACCAG
GCGGCGATGTTTTCGCAGATTGTGCTGCGGGACCTGTTGGTGCACACGTTGGAGCACTTGCTCAT
TGTGTTTGAGTACTGGCACAACGAGTGTCCGGACACTGCGGTGTACAGCGACTACGCGAAGCGGC
TTCTCGAGACGTTGTGAGCAGTCGAGACGGGGAGAATTCGAAACGGGAGGGTTCGAGTGAGGAAG
TGGGTTCGAGACAGGATGAGGCTTTTTGAGCGTAGGTCAGGTATAAGCGGCGAGGACAGCAGGTC
GGCTGAACCGGCGAGCGACAGCAGCAGGCAGAGGCGAGCAAGGCA
Right flanking sequence: Indices 33660 -- 34159
CCTCGGTTGCATTGACAGGGTAGGTGAAAGAGTGATAGTAATAGAGATGAAAATAGACACGAGGC
AGGATGAAGGGTAGAGCAGGGAAGGAGGAGGCTGAGACAGGATGAAGGCTGAAACAGCCTGAGAC
AGGCAGAGAGCAGACAGAGAGCAGGATGAGACAGGCGGCGATAGGCTGAGATAGCTGAGACAGAC
TGAGAGCAAAGGTGGAGTGGAGACTATAGAAAATGTTCATAGGACTAAATATGGGTTCAATCGGG
TGAGACACTGTAAGCGCAAGGGGATGACATGACCGAGACCATTACAGCCGCAGGTCACATTCTCG
GCCACTGAGACATTATCCGACATGACACCCCTCCTCTTGGTTGCAAGCGCATACCCCGCCTGTCA
ATCATGGTCTGATTCCGGTTTCAACGTGTCTGTTATACGTCACATCCCCCAACGGCTTAGCTCTG
TGCACCTAAGCGAGGCGCCAAGTCCCACCCAACTACACTACAGAC
Found at i:34944 original size:8 final size:8
Alignment explanation
Indices: 34931--34963 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
34921 GCTGGTAGCG
34931 GGTGGTGT
1 GGTGGTGT
34939 GGTGGTGT
1 GGTGGTGT
*
34947 GGTGGGGT
1 GGTGGTGT
34955 GGTGGTGT
1 GGTGGTGT
34963 G
1 G
34964 ATGGCTGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (8 bp):
GGTGGTGT
Left flanking sequence: Indices 34431 -- 34930
CCCGTGTCACCTCCCCCAACCAACCCCATGCTAACCTCTAGTGGGCCGGGTGATGAAGGCAGCCC
TTCCCCCCCAAGGAAAGCTCTCGAAAGAGCTGAAAGAATGCATGCAAGAGTGTGTGTCCGAGTTC
ATCCTCTTCATCACGTCGCAGCTGAGCGACCGGTGCATGTTGGAGAAGCGCAAGACCATGAATGG
CGAGGACATCTTGTGGCTGATGTACACCCTCGGGTTCGAGCACTACGCCGAGATGCTCAAGATCT
ACTTGGCCAAGTACCGCGAGTACGAGGCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCCGCCGC
AAGCGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGAAGAGTCCGAGTCGGTGTCGGAGGGGGTGTC
GCCCGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGTGAGTGGTTCGAAG
AGTGGATTTAGAGGGCTGGTGGTCGGTGGCTGGTGGCTGGTAGCG
Right flanking sequence: Indices 34964 -- 35463
ATGGCTGAGGCTACGAGGCTATGGACCGAGGTACAAGGCTATGACTAGGGTATGAGGCTATGACT
AGGGTATGAGGCAATGAGCAATGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTT
CGTTGTGAGTGATTGTCGTTGCGTGGATTGTCGTAGCATGGATTGTTGTTGCGAGGCATTGCCGT
TGTGAGGCATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGC
ACCATGGCTACGAACAAGCCATCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACAC
CCAATTGCCCAACCACCCAATTGCCCAACCACCTAATTGCCTAACTACCCATTTACCCATTTACC
AACCACTTACCCAACTACCTACCCAACCACTTACCCAACCACCTACCCAACCACCTACCCAACCC
CCCTTCCCACCCCATCGACCCATACCGTCACCTCTACCAGCCAGC
Found at i:35021 original size:19 final size:19
Alignment explanation
Indices: 34999--35045 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
34989 CCGAGGTACA
34999 AGGCTATGACTAGGGTATG
1 AGGCTATGACTAGGGTATG
35018 AGGCTATGACTAGGGTATG
1 AGGCTATGACTAGGGTATG
*
35037 AGGCAATGA
1 AGGCTATGA
35046 GCAATGCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.36, T:0.23
Consensus pattern (19 bp):
AGGCTATGACTAGGGTATG
Left flanking sequence: Indices 34499 -- 34998
CCCCCCAAGGAAAGCTCTCGAAAGAGCTGAAAGAATGCATGCAAGAGTGTGTGTCCGAGTTCATC
CTCTTCATCACGTCGCAGCTGAGCGACCGGTGCATGTTGGAGAAGCGCAAGACCATGAATGGCGA
GGACATCTTGTGGCTGATGTACACCCTCGGGTTCGAGCACTACGCCGAGATGCTCAAGATCTACT
TGGCCAAGTACCGCGAGTACGAGGCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCCGCCGCAAG
CGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGAAGAGTCCGAGTCGGTGTCGGAGGGGGTGTCGCC
CGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGTGAGTGGTTCGAAGAGT
GGATTTAGAGGGCTGGTGGTCGGTGGCTGGTGGCTGGTAGCGGGTGGTGTGGTGGTGTGGTGGGG
TGGTGGTGTGATGGCTGAGGCTACGAGGCTATGGACCGAGGTACA
Right flanking sequence: Indices 35046 -- 35545
GCAATGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTC
GTTGCGTGGATTGTCGTAGCATGGATTGTTGTTGCGAGGCATTGCCGTTGTGAGGCATTGCCGTT
GTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGCACCATGGCTACGAACAA
GCCATCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACCCAATTGCCCAACCACC
CAATTGCCCAACCACCTAATTGCCTAACTACCCATTTACCCATTTACCAACCACTTACCCAACTA
CCTACCCAACCACTTACCCAACCACCTACCCAACCACCTACCCAACCCCCCTTCCCACCCCATCG
ACCCATACCGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGACACCACTC
CCACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGA
Found at i:35114 original size:16 final size:15
Alignment explanation
Indices: 35063--35176 Score: 63
Period size: 16 Copynumber: 7.5 Consensus size: 15
35053 AACGGGTAAA
* *
35063 GTCGTTGCGTGGATC
1 GTCGTTGCGAGGATT
* *
35078 GTCGTAGCGA-G-TG
1 GTCGTTGCGAGGATT
*
35091 GTTCGTTGTGAGTGATT
1 G-TCGTTGCGAG-GATT
*
35108 GTCGTTGCGTGGATT
1 GTCGTTGCGAGGATT
*
35123 GTCGTAGC-ATGGATT
1 GTCGTTGCGA-GGATT
*
35138 GTTGTTGCGAGGCATT
1 GTCGTTGCGAGG-ATT
* *
35154 GCCGTTGTGAGGCATT
1 GTCGTTGCGAGG-ATT
*
35170 GCCGTTG
1 GTCGTTG
35177 TGACTCGTAA
Statistics
Matches: 77, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
13 2 0.03
14 8 0.10
15 32 0.42
16 33 0.43
17 2 0.03
ACGTcount: A:0.11, C:0.15, G:0.39, T:0.35
Consensus pattern (15 bp):
GTCGTTGCGAGGATT
Left flanking sequence: Indices 34563 -- 35062
CCTCTTCATCACGTCGCAGCTGAGCGACCGGTGCATGTTGGAGAAGCGCAAGACCATGAATGGCG
AGGACATCTTGTGGCTGATGTACACCCTCGGGTTCGAGCACTACGCCGAGATGCTCAAGATCTAC
TTGGCCAAGTACCGCGAGTACGAGGCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCCGCCGCAA
GCGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGAAGAGTCCGAGTCGGTGTCGGAGGGGGTGTCGC
CCGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGTGAGTGGTTCGAAGAG
TGGATTTAGAGGGCTGGTGGTCGGTGGCTGGTGGCTGGTAGCGGGTGGTGTGGTGGTGTGGTGGG
GTGGTGGTGTGATGGCTGAGGCTACGAGGCTATGGACCGAGGTACAAGGCTATGACTAGGGTATG
AGGCTATGACTAGGGTATGAGGCAATGAGCAATGCAACGGGTAAA
Right flanking sequence: Indices 35177 -- 35676
TGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGCACCATGGCTACGAACAAG
CCATCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACCCAATTGCCCAACCACCC
AATTGCCCAACCACCTAATTGCCTAACTACCCATTTACCCATTTACCAACCACTTACCCAACTAC
CTACCCAACCACTTACCCAACCACCTACCCAACCACCTACCCAACCCCCCTTCCCACCCCATCGA
CCCATACCGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGACACCACTCC
CACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGACATCCGTCAAGCAGGTACACC
CAGCCACCCGGGCCGCTCTCGTCACGACATCGCGGCCCACGCGTCCTCGCACCGCCAAACGCGTC
TCCCGCCACCACCGCGCCCCCTGGCCAACCATCTCGGGTGCATCA
Found at i:35124 original size:15 final size:15
Alignment explanation
Indices: 35104--35160 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
35094 CGTTGTGAGT
35104 GATTGTCGTTGCGTG
1 GATTGTCGTTGCGTG
* *
35119 GATTGTCGTAGCATG
1 GATTGTCGTTGCGTG
* *
35134 GATTGTTGTTGCGAG
1 GATTGTCGTTGCGTG
*
35149 GCATTGCCGTTG
1 G-ATTGTCGTTG
35161 TGAGGCATTG
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
15 25 0.76
16 8 0.24
ACGTcount: A:0.12, C:0.14, G:0.37, T:0.37
Consensus pattern (15 bp):
GATTGTCGTTGCGTG
Left flanking sequence: Indices 34604 -- 35103
AGAAGCGCAAGACCATGAATGGCGAGGACATCTTGTGGCTGATGTACACCCTCGGGTTCGAGCAC
TACGCCGAGATGCTCAAGATCTACTTGGCCAAGTACCGCGAGTACGAGGCCGAGGAGGCCGCCAA
GCGCCCGCAGCGGATCCGCCGCAAGCGGCCCAAGGTGCTGGAGCTGCTGCCCGAGGAAGAGTCCG
AGTCGGTGTCGGAGGGGGTGTCGCCCGATGTCGGGTACGAGCCGGTGTACGAGACCCGGGGCTAC
CCGGCGGGTGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGTCGGTGGCTGGTGGCTGGTAG
CGGGTGGTGTGGTGGTGTGGTGGGGTGGTGGTGTGATGGCTGAGGCTACGAGGCTATGGACCGAG
GTACAAGGCTATGACTAGGGTATGAGGCTATGACTAGGGTATGAGGCAATGAGCAATGCAACGGG
TAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGT
Right flanking sequence: Indices 35161 -- 35660
TGAGGCATTGCCGTTGTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGCAC
CATGGCTACGAACAAGCCATCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACCC
AATTGCCCAACCACCCAATTGCCCAACCACCTAATTGCCTAACTACCCATTTACCCATTTACCAA
CCACTTACCCAACTACCTACCCAACCACTTACCCAACCACCTACCCAACCACCTACCCAACCCCC
CTTCCCACCCCATCGACCCATACCGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCA
CCCCGGACACCACTCCCACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGACATCC
GTCAAGCAGGTACACCCAGCCACCCGGGCCGCTCTCGTCACGACATCGCGGCCCACGCGTCCTCG
CACCGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAAC
Found at i:35177 original size:16 final size:16
Alignment explanation
Indices: 35141--35179 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
35131 ATGGATTGTT
*
35141 GTTGCGAGGCATTGCC
1 GTTGTGAGGCATTGCC
35157 GTTGTGAGGCATTGCC
1 GTTGTGAGGCATTGCC
35173 GTTGTGA
1 GTTGTGA
35180 CTCGTAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.13, C:0.18, G:0.38, T:0.31
Consensus pattern (16 bp):
GTTGTGAGGCATTGCC
Left flanking sequence: Indices 34641 -- 35140
GCTGATGTACACCCTCGGGTTCGAGCACTACGCCGAGATGCTCAAGATCTACTTGGCCAAGTACC
GCGAGTACGAGGCCGAGGAGGCCGCCAAGCGCCCGCAGCGGATCCGCCGCAAGCGGCCCAAGGTG
CTGGAGCTGCTGCCCGAGGAAGAGTCCGAGTCGGTGTCGGAGGGGGTGTCGCCCGATGTCGGGTA
CGAGCCGGTGTACGAGACCCGGGGCTACCCGGCGGGTGAGTGGTTCGAAGAGTGGATTTAGAGGG
CTGGTGGTCGGTGGCTGGTGGCTGGTAGCGGGTGGTGTGGTGGTGTGGTGGGGTGGTGGTGTGAT
GGCTGAGGCTACGAGGCTATGGACCGAGGTACAAGGCTATGACTAGGGTATGAGGCTATGACTAG
GGTATGAGGCAATGAGCAATGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCG
TTGTGAGTGATTGTCGTTGCGTGGATTGTCGTAGCATGGATTGTT
Right flanking sequence: Indices 35180 -- 35679
CTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGCACCATGGCTACGAACAAGCCA
TCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACCCAATTGCCCAACCACCCAAT
TGCCCAACCACCTAATTGCCTAACTACCCATTTACCCATTTACCAACCACTTACCCAACTACCTA
CCCAACCACTTACCCAACCACCTACCCAACCACCTACCCAACCCCCCTTCCCACCCCATCGACCC
ATACCGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGACACCACTCCCAC
CCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGACATCCGTCAAGCAGGTACACCCAG
CCACCCGGGCCGCTCTCGTCACGACATCGCGGCCCACGCGTCCTCGCACCGCCAAACGCGTCTCC
CGCCACCACCGCGCCCCCTGGCCAACCATCTCGGGTGCATCAAGC
Found at i:35307 original size:16 final size:16
Alignment explanation
Indices: 35286--35339 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
35276 ACCAATTGCA
35286 CACCCAATTGCCCAAC
1 CACCCAATTGCCCAAC
35302 CACCCAATTGCCCAAC
1 CACCCAATTGCCCAAC
* *
35318 CACCTAATTGCCTAAC
1 CACCCAATTGCCCAAC
*
35334 TACCCA
1 CACCCA
35340 TTTACCCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.46, G:0.06, T:0.17
Consensus pattern (16 bp):
CACCCAATTGCCCAAC
Left flanking sequence: Indices 34786 -- 35285
GAGGAAGAGTCCGAGTCGGTGTCGGAGGGGGTGTCGCCCGATGTCGGGTACGAGCCGGTGTACGA
GACCCGGGGCTACCCGGCGGGTGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGTCGGTGGC
TGGTGGCTGGTAGCGGGTGGTGTGGTGGTGTGGTGGGGTGGTGGTGTGATGGCTGAGGCTACGAG
GCTATGGACCGAGGTACAAGGCTATGACTAGGGTATGAGGCTATGACTAGGGTATGAGGCAATGA
GCAATGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTC
GTTGCGTGGATTGTCGTAGCATGGATTGTTGTTGCGAGGCATTGCCGTTGTGAGGCATTGCCGTT
GTGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGCACCATGGCTACGAACAA
GCCATCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCA
Right flanking sequence: Indices 35340 -- 35839
TTTACCCATTTACCAACCACTTACCCAACTACCTACCCAACCACTTACCCAACCACCTACCCAAC
CACCTACCCAACCCCCCTTCCCACCCCATCGACCCATACCGTCACCTCTACCAGCCAGCATTCAC
TTCTCAAACGGGCTCACCCCGGACACCACTCCCACCCACTGACATCACACCCACTGACATCGCCC
CATCCCCGCGACATCCGTCAAGCAGGTACACCCAGCCACCCGGGCCGCTCTCGTCACGACATCGC
GGCCCACGCGTCCTCGCACCGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAACCATC
TCGGGTGCATCAAGCGTCCTGCGCACCATATCCCGGTGGCCCTTCGCTCCCGGCCTGTACGGTGT
CGGAAGGGGGGTCTAGATACAGGCGATGACGCACGATCTACAAATTTTTGCATTGTTAGGGGCGA
TGCCAATGGGCCCGATAGCCATCTAATACACACGTAGACCCACAA
Found at i:35376 original size:12 final size:12
Alignment explanation
Indices: 35352--35417 Score: 105
Period size: 12 Copynumber: 5.5 Consensus size: 12
35342 TACCCATTTA
*
35352 CCAACCACTTAC
1 CCAACCACCTAC
*
35364 CCAACTACCTAC
1 CCAACCACCTAC
*
35376 CCAACCACTTAC
1 CCAACCACCTAC
35388 CCAACCACCTAC
1 CCAACCACCTAC
35400 CCAACCACCTAC
1 CCAACCACCTAC
35412 CCAACC
1 CCAACC
35418 CCCCTTCCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 49 1.00
ACGTcount: A:0.33, C:0.55, G:0.00, T:0.12
Consensus pattern (12 bp):
CCAACCACCTAC
Left flanking sequence: Indices 34852 -- 35351
ACCCGGGGCTACCCGGCGGGTGAGTGGTTCGAAGAGTGGATTTAGAGGGCTGGTGGTCGGTGGCT
GGTGGCTGGTAGCGGGTGGTGTGGTGGTGTGGTGGGGTGGTGGTGTGATGGCTGAGGCTACGAGG
CTATGGACCGAGGTACAAGGCTATGACTAGGGTATGAGGCTATGACTAGGGTATGAGGCAATGAG
CAATGCAACGGGTAAAGTCGTTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTCG
TTGCGTGGATTGTCGTAGCATGGATTGTTGTTGCGAGGCATTGCCGTTGTGAGGCATTGCCGTTG
TGACTCGTAATTGCTTGCATGGGTTCTAAAAATACACCAGTCTTAGCACCATGGCTACGAACAAG
CCATCACACAACTAGCAAATCGCACTACTAATCCACCAATTGCACACCCAATTGCCCAACCACCC
AATTGCCCAACCACCTAATTGCCTAACTACCCATTTACCCATTTA
Right flanking sequence: Indices 35418 -- 35917
CCCCTTCCCACCCCATCGACCCATACCGTCACCTCTACCAGCCAGCATTCACTTCTCAAACGGGC
TCACCCCGGACACCACTCCCACCCACTGACATCACACCCACTGACATCGCCCCATCCCCGCGACA
TCCGTCAAGCAGGTACACCCAGCCACCCGGGCCGCTCTCGTCACGACATCGCGGCCCACGCGTCC
TCGCACCGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAACCATCTCGGGTGCATCAA
GCGTCCTGCGCACCATATCCCGGTGGCCCTTCGCTCCCGGCCTGTACGGTGTCGGAAGGGGGGTC
TAGATACAGGCGATGACGCACGATCTACAAATTTTTGCATTGTTAGGGGCGATGCCAATGGGCCC
GATAGCCATCTAATACACACGTAGACCCACAAAAGAGCCCACCGGCCAATTGCCCGTAGCCCACC
CGTAGCCCACCACACCGTGCTCCCAGTGCCACGCGTGGCCAGCCC
Found at i:35522 original size:15 final size:15
Alignment explanation
Indices: 35502--35530 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
35492 ACACCACTCC
35502 CACCCACTGACATCA
1 CACCCACTGACATCA
35517 CACCCACTGACATC
1 CACCCACTGACATC
35531 GCCCCATCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.48, G:0.07, T:0.14
Consensus pattern (15 bp):
CACCCACTGACATCA
Left flanking sequence: Indices 35002 -- 35501
CTATGACTAGGGTATGAGGCTATGACTAGGGTATGAGGCAATGAGCAATGCAACGGGTAAAGTCG
TTGCGTGGATCGTCGTAGCGAGTGGTTCGTTGTGAGTGATTGTCGTTGCGTGGATTGTCGTAGCA
TGGATTGTTGTTGCGAGGCATTGCCGTTGTGAGGCATTGCCGTTGTGACTCGTAATTGCTTGCAT
GGGTTCTAAAAATACACCAGTCTTAGCACCATGGCTACGAACAAGCCATCACACAACTAGCAAAT
CGCACTACTAATCCACCAATTGCACACCCAATTGCCCAACCACCCAATTGCCCAACCACCTAATT
GCCTAACTACCCATTTACCCATTTACCAACCACTTACCCAACTACCTACCCAACCACTTACCCAA
CCACCTACCCAACCACCTACCCAACCCCCCTTCCCACCCCATCGACCCATACCGTCACCTCTACC
AGCCAGCATTCACTTCTCAAACGGGCTCACCCCGGACACCACTCC
Right flanking sequence: Indices 35531 -- 36030
GCCCCATCCCCGCGACATCCGTCAAGCAGGTACACCCAGCCACCCGGGCCGCTCTCGTCACGACA
TCGCGGCCCACGCGTCCTCGCACCGCCAAACGCGTCTCCCGCCACCACCGCGCCCCCTGGCCAAC
CATCTCGGGTGCATCAAGCGTCCTGCGCACCATATCCCGGTGGCCCTTCGCTCCCGGCCTGTACG
GTGTCGGAAGGGGGGTCTAGATACAGGCGATGACGCACGATCTACAAATTTTTGCATTGTTAGGG
GCGATGCCAATGGGCCCGATAGCCATCTAATACACACGTAGACCCACAAAAGAGCCCACCGGCCA
ATTGCCCGTAGCCCACCCGTAGCCCACCACACCGTGCTCCCAGTGCCACGCGTGGCCAGCCCCCT
CGCGCAGCCCGTCTCTACGCCCACCCAGACCCGGGTGGCGGGTGCGTCCACCGCGTTCTAGGCCA
TTCCTCGCTCCGACAACGCGGGAAAAACGAAGGGGGGTGCCCGAA
Found at i:36429 original size:12 final size:13
Alignment explanation
Indices: 36408--36470 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 13
36398 CGCTGGCACC
36408 CCCA-CCACCGAG
1 CCCACCCACCGAG
*
36420 TCC-CCCACCGAG
1 CCCACCCACCGAG
36432 CCCACCCACCACCGAG
1 CCCA--C-CCACCGAG
36448 CCCA-CCACCGAG
1 CCCACCCACCGAG
*
36460 -CCTCCCACCGA
1 CCCACCCACCGA
36471 CCTCGGGCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
11 2 0.05
12 27 0.64
15 1 0.02
16 12 0.29
ACGTcount: A:0.22, C:0.60, G:0.14, T:0.03
Consensus pattern (13 bp):
CCCACCCACCGAG
Left flanking sequence: Indices 35908 -- 36407
TGGCCAGCCCCCTCGCGCAGCCCGTCTCTACGCCCACCCAGACCCGGGTGGCGGGTGCGTCCACC
GCGTTCTAGGCCATTCCTCGCTCCGACAACGCGGGAAAAACGAAGGGGGGTGCCCGAAAGCGGCA
ACTCTACAAACACCGCCCGCAATCGCCGCTGCCACCGCCAGGGAGCCCGTGCGACGCGGTGGAGG
CGAAGCCACGCGACAATAGGGGTCACCGTGCATAATTTTTTCTGGTAACACAGTAACACCTTATT
ACTATTCCCAATCGAGCCAGCAGCGTACGCACGAATTGGGCCGGGCACGCTCGATTTCAAATGCT
GTACTGTGTTCGCCGTAAGGGCACTATCTCGTCGCAATTGCCAGCCCGGTGTTGCAAACAAACCA
CCAGACCCACGGCGTTGATTTCCAGCTCCGCCCCCCCTCCCTCCCCTACCCGCCACCGCCGCCAC
CGAGCCCCCGGCGGCCTTTCGCTCCCCCTCATCTCCGCTGGCACC
Right flanking sequence: Indices 36471 -- 36970
CCTCGGGCTCCACAATGATTAAATCGTTTCGCCGCAGCAAACGCCACAGCGCCCTGCTGACCCTG
CCCCGCACCATCACCCGGGTGCTGCTGGCCGACGACACCGCCGACTTGGGCCTGCCGAAAAAGGT
GATCCGTGCCCTCTACAACTACTCGCCCCAGGGCCCGCGCGAGCTCAAGTTCGCCAAGGGCGACT
TCTTCCACGTGTTGCTGCCCGACGACCTGCAGGACGTGGCCAACGGGTGGTACGAGGCACTGAAC
CCGGCCACCCACGCCAAGGGGATGGTGCCCATCCTGTACTTTGAGGTGTTGGAGCGCACGCGGCC
CCACACCAACGGGCTGGTGCTGCTGGGCGTGCTGACGCTCCTGGCCGCGCTGAACCGCCTGCTGG
GCGCCCACACCTTGTACGCACAGGTGCTCTACGAGTTCAAGGCCGAGCGCGAGGACGAGCTCGAC
ATCTTCCCCGGCGAAAACTTGATTGTGTGCGCCCACCACGACTAC
Found at i:36446 original size:28 final size:28
Alignment explanation
Indices: 36408--36461 Score: 92
Period size: 28 Copynumber: 1.9 Consensus size: 28
36398 CGCTGGCACC
36408 CCCACCACCGAGTCCC-CCACCGAGCCCA
1 CCCACCACCGAG-CCCACCACCGAGCCCA
36436 CCCACCACCGAGCCCACCACCGAGCC
1 CCCACCACCGAGCCCACCACCGAGCC
36462 TCCCACCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.22, C:0.61, G:0.15, T:0.02
Consensus pattern (28 bp):
CCCACCACCGAGCCCACCACCGAGCCCA
Left flanking sequence: Indices 35908 -- 36407
TGGCCAGCCCCCTCGCGCAGCCCGTCTCTACGCCCACCCAGACCCGGGTGGCGGGTGCGTCCACC
GCGTTCTAGGCCATTCCTCGCTCCGACAACGCGGGAAAAACGAAGGGGGGTGCCCGAAAGCGGCA
ACTCTACAAACACCGCCCGCAATCGCCGCTGCCACCGCCAGGGAGCCCGTGCGACGCGGTGGAGG
CGAAGCCACGCGACAATAGGGGTCACCGTGCATAATTTTTTCTGGTAACACAGTAACACCTTATT
ACTATTCCCAATCGAGCCAGCAGCGTACGCACGAATTGGGCCGGGCACGCTCGATTTCAAATGCT
GTACTGTGTTCGCCGTAAGGGCACTATCTCGTCGCAATTGCCAGCCCGGTGTTGCAAACAAACCA
CCAGACCCACGGCGTTGATTTCCAGCTCCGCCCCCCCTCCCTCCCCTACCCGCCACCGCCGCCAC
CGAGCCCCCGGCGGCCTTTCGCTCCCCCTCATCTCCGCTGGCACC
Right flanking sequence: Indices 36462 -- 36961
TCCCACCGACCTCGGGCTCCACAATGATTAAATCGTTTCGCCGCAGCAAACGCCACAGCGCCCTG
CTGACCCTGCCCCGCACCATCACCCGGGTGCTGCTGGCCGACGACACCGCCGACTTGGGCCTGCC
GAAAAAGGTGATCCGTGCCCTCTACAACTACTCGCCCCAGGGCCCGCGCGAGCTCAAGTTCGCCA
AGGGCGACTTCTTCCACGTGTTGCTGCCCGACGACCTGCAGGACGTGGCCAACGGGTGGTACGAG
GCACTGAACCCGGCCACCCACGCCAAGGGGATGGTGCCCATCCTGTACTTTGAGGTGTTGGAGCG
CACGCGGCCCCACACCAACGGGCTGGTGCTGCTGGGCGTGCTGACGCTCCTGGCCGCGCTGAACC
GCCTGCTGGGCGCCCACACCTTGTACGCACAGGTGCTCTACGAGTTCAAGGCCGAGCGCGAGGAC
GAGCTCGACATCTTCCCCGGCGAAAACTTGATTGTGTGCGCCCAC
Found at i:38131 original size:20 final size:20
Alignment explanation
Indices: 38106--38175 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
38096 GGTAACGCAG
38106 CAGACGGGCTCGGACGGGCT
1 CAGACGGGCTCGGACGGGCT
38126 CAGACGGGCTCGGACGGGCT
1 CAGACGGGCTCGGACGGGCT
38146 CAGACGGGCTCGGACGGGCT
1 CAGACGGGCTCGGACGGGCT
*
38166 CAGACTGGCT
1 CAGACGGGCT
38176 GGGGGGCCGC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.16, C:0.30, G:0.43, T:0.11
Consensus pattern (20 bp):
CAGACGGGCTCGGACGGGCT
Left flanking sequence: Indices 37606 -- 38105
CCAGAACGGGTTCGACCGCGAGGAGGACGGCCCGGTGCGCCGGGCGCTGAAGCCCATCTCGCAAA
AGAGCAACTACCAGCAGGACCGGTTGTCGCAGTACATGAACACCCGCGCGCTGAACGTGCTGGAG
CTGCTGGGCCCGGACCCGCTGGCGCGCAAGGTCAAGGTCAAGTTCTACTTTGGCGACGACATCTT
TGTGTTGTTGTTGCCCACGGTGTTGCAGTTGCGCGACTTGAAGACAAAGTTGCACCAGCGGTTGC
TGTTGGCAGCGGACCAGCAGGTGCTGTTGTTTTTGAAAAACGACTACGACGAGTACATGGCCGAG
CACGAGCTCGCGGCGCCGGACCCGGGCGCCATGCGCGAGTTCGAGGTCGACGACGACGCCAAGTT
CCAGCAAATCCTTTACGACAAGTGCAAGTTGGTGATTTTGCACTCCTAGACGACAAACACACACT
GTATTATATAGCCTGTTGGTAATATTATGACTTTCGGTAACGCAG
Right flanking sequence: Indices 38176 -- 38675
GGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCATGGGGGCGGAGTGGTTGGTTGA
GTGTGTGGGTTGGAGTGGAAGTTGGAGTGGTGGTGTGGTAGGGCTCATGGAGGGATAGGGCCTGG
TTGGTGAGGTGGTGGGTGGTTACTAGGGTTAGGGCGGATTAGGGTCGAGACTAGTGTTTTTGGTT
GTGTCTGGATACGTCTAGCTGTGTGTGGCTGTGTGTCTGGCTCATTTTGTGGGCGTTCATATGGC
GCTACGGGACGTTTGGTCGAGTACATGTTGGTGAATTATATGTGGTAATTCGAGACCTTGTTTTG
AGCTATGGAACAATCTTCCATACGAATACATTGGAGTTTTCTTCCGTCGGTACCATTTTATTACA
CTGGAACACGCGTCTGCCCTCCACTACTGTGTCAAAACCACCGTCTCTCTTACTGCGCTGAAAAT
TTCCCGATTCATCGGCCGGTTGACATGTTTGTGTTACCAAGTACG
Found at i:38175 original size:10 final size:10
Alignment explanation
Indices: 38106--38175 Score: 104
Period size: 10 Copynumber: 7.0 Consensus size: 10
38096 GGTAACGCAG
38106 CAGACGGGCT
1 CAGACGGGCT
*
38116 CGGACGGGCT
1 CAGACGGGCT
38126 CAGACGGGCT
1 CAGACGGGCT
*
38136 CGGACGGGCT
1 CAGACGGGCT
38146 CAGACGGGCT
1 CAGACGGGCT
*
38156 CGGACGGGCT
1 CAGACGGGCT
*
38166 CAGACTGGCT
1 CAGACGGGCT
38176 GGGGGGCCGC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 53 1.00
ACGTcount: A:0.16, C:0.30, G:0.43, T:0.11
Consensus pattern (10 bp):
CAGACGGGCT
Left flanking sequence: Indices 37606 -- 38105
CCAGAACGGGTTCGACCGCGAGGAGGACGGCCCGGTGCGCCGGGCGCTGAAGCCCATCTCGCAAA
AGAGCAACTACCAGCAGGACCGGTTGTCGCAGTACATGAACACCCGCGCGCTGAACGTGCTGGAG
CTGCTGGGCCCGGACCCGCTGGCGCGCAAGGTCAAGGTCAAGTTCTACTTTGGCGACGACATCTT
TGTGTTGTTGTTGCCCACGGTGTTGCAGTTGCGCGACTTGAAGACAAAGTTGCACCAGCGGTTGC
TGTTGGCAGCGGACCAGCAGGTGCTGTTGTTTTTGAAAAACGACTACGACGAGTACATGGCCGAG
CACGAGCTCGCGGCGCCGGACCCGGGCGCCATGCGCGAGTTCGAGGTCGACGACGACGCCAAGTT
CCAGCAAATCCTTTACGACAAGTGCAAGTTGGTGATTTTGCACTCCTAGACGACAAACACACACT
GTATTATATAGCCTGTTGGTAATATTATGACTTTCGGTAACGCAG
Right flanking sequence: Indices 38176 -- 38675
GGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCATGGGGGCGGAGTGGTTGGTTGA
GTGTGTGGGTTGGAGTGGAAGTTGGAGTGGTGGTGTGGTAGGGCTCATGGAGGGATAGGGCCTGG
TTGGTGAGGTGGTGGGTGGTTACTAGGGTTAGGGCGGATTAGGGTCGAGACTAGTGTTTTTGGTT
GTGTCTGGATACGTCTAGCTGTGTGTGGCTGTGTGTCTGGCTCATTTTGTGGGCGTTCATATGGC
GCTACGGGACGTTTGGTCGAGTACATGTTGGTGAATTATATGTGGTAATTCGAGACCTTGTTTTG
AGCTATGGAACAATCTTCCATACGAATACATTGGAGTTTTCTTCCGTCGGTACCATTTTATTACA
CTGGAACACGCGTCTGCCCTCCACTACTGTGTCAAAACCACCGTCTCTCTTACTGCGCTGAAAAT
TTCCCGATTCATCGGCCGGTTGACATGTTTGTGTTACCAAGTACG
Found at i:39120 original size:4 final size:4
Alignment explanation
Indices: 39107--39145 Score: 53
Period size: 4 Copynumber: 9.5 Consensus size: 4
39097 CTTCTCTCTT
39107 TTTC -TTC TTTC TTTC TTTC TTTC TCTTC TCTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC T-TTC T-TTC TTTC TT
39146 CTCTCACTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 3 0.09
4 21 0.64
5 9 0.27
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTC
Left flanking sequence: Indices 38607 -- 39106
CGTCTCTCTTACTGCGCTGAAAATTTCCCGATTCATCGGCCGGTTGACATGTTTGTGTTACCAAG
TACGATGGCTGCAAAGAGACAATGGCGTCTCAGATCCGAATGGAGATCGACTACACGTTCGTAAA
GTGGCCGTTAGGGTGCTGAATGGAGGTGAAATGCAACGTGTCAATGCGCTATTGACAGGTGGTTA
CAGGGTCGATGGTAGCTTGAGCGAAAAGAGGATGATAAATCTGTGGGGTATCGGTCGTCAATTCT
ATGTTCAATTCGTTGGTACCATCGGGGGAGTCTACGAGCCAACATACCGAGTCAAACGATTCGGT
TAGGGTAACAACCGTAACCTGTACGACAGTTTGTACACGACATACTCGCATCGATTAATGCGATA
ACCGCAGCTACAACTAAACAATCAGCTACACCACAGGCAACCAGGCAACTACAGGCCACAGGCAA
CTTCCACAAACACTTTTACAAACCTCAGCTCAGTTCTTCTCTCTT
Right flanking sequence: Indices 39146 -- 39645
CTCTCACTGTTTATTTCTACTCACTTGGTGGCGCCTTCCTTTACGTAGGCCGGGTCGGGCTCATT
GAGACCGCCCGTCGCAGGCGAATCGCCCAAGCTCTTCTGAGACACCACGGGGGTAGCCTGGAAGG
CGGGCGTGGCCAGGAGCTCCCCCTGTGCTCGGCCAGGGGTGGCGGTCTCCACCGTGGACTGGCCC
TCGTTGGGCGCTTGCACCCGACGGTTGGTCAGCCCGTAGACAGACGTGTTCAGCGAATGCGACAG
CGTGTCGCGCCGGGCAGGGTCCTGGATCGGTTTCTCCATCCCGTTCTCGTCCAACAGCTCGGGGT
CGTGGAACTCCTGGTTGTAGCGTTTCCGCTCCAGGCGCTTGCGGAGAAGGTGGATCCCAAGGAAC
ACCAACAAGATGCCAAGGGGAATGAGAAGCAACAAGAACATGAGCCAGCGCCAGCGGAACCAGCC
CAGCAGGCGGGGGTGCACCACCACAAACATGGGGGAAGGAGTTGC
Found at i:39147 original size:21 final size:20
Alignment explanation
Indices: 39098--39147 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
39088 AGCTCAGTTC
*
39098 TTCTCTCTTTTTCTTCTTTCT
1 TTCT-TCTTTCTCTTCTTTCT
39119 TTCTTTCTTTCTCTTCTCTTCT
1 TTC-TTCTTTCTCTTCT-TTCT
39141 TTCTTCT
1 TTCTTCT
39148 CTCACTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (20 bp):
TTCTTCTTTCTCTTCTTTCT
Left flanking sequence: Indices 38598 -- 39097
CAAAACCACCGTCTCTCTTACTGCGCTGAAAATTTCCCGATTCATCGGCCGGTTGACATGTTTGT
GTTACCAAGTACGATGGCTGCAAAGAGACAATGGCGTCTCAGATCCGAATGGAGATCGACTACAC
GTTCGTAAAGTGGCCGTTAGGGTGCTGAATGGAGGTGAAATGCAACGTGTCAATGCGCTATTGAC
AGGTGGTTACAGGGTCGATGGTAGCTTGAGCGAAAAGAGGATGATAAATCTGTGGGGTATCGGTC
GTCAATTCTATGTTCAATTCGTTGGTACCATCGGGGGAGTCTACGAGCCAACATACCGAGTCAAA
CGATTCGGTTAGGGTAACAACCGTAACCTGTACGACAGTTTGTACACGACATACTCGCATCGATT
AATGCGATAACCGCAGCTACAACTAAACAATCAGCTACACCACAGGCAACCAGGCAACTACAGGC
CACAGGCAACTTCCACAAACACTTTTACAAACCTCAGCTCAGTTC
Right flanking sequence: Indices 39148 -- 39647
CTCACTGTTTATTTCTACTCACTTGGTGGCGCCTTCCTTTACGTAGGCCGGGTCGGGCTCATTGA
GACCGCCCGTCGCAGGCGAATCGCCCAAGCTCTTCTGAGACACCACGGGGGTAGCCTGGAAGGCG
GGCGTGGCCAGGAGCTCCCCCTGTGCTCGGCCAGGGGTGGCGGTCTCCACCGTGGACTGGCCCTC
GTTGGGCGCTTGCACCCGACGGTTGGTCAGCCCGTAGACAGACGTGTTCAGCGAATGCGACAGCG
TGTCGCGCCGGGCAGGGTCCTGGATCGGTTTCTCCATCCCGTTCTCGTCCAACAGCTCGGGGTCG
TGGAACTCCTGGTTGTAGCGTTTCCGCTCCAGGCGCTTGCGGAGAAGGTGGATCCCAAGGAACAC
CAACAAGATGCCAAGGGGAATGAGAAGCAACAAGAACATGAGCCAGCGCCAGCGGAACCAGCCCA
GCAGGCGGGGGTGCACCACCACAAACATGGGGGAAGGAGTTGCGT
Found at i:42294 original size:25 final size:21
Alignment explanation
Indices: 42242--42313 Score: 99
Period size: 21 Copynumber: 3.2 Consensus size: 21
42232 GTCGCAGGCG
*
42242 GGCAGGGTCCGTGGTGTAAAC
1 GGCAGGGTCCGTGGTGTTAAC
42263 GGCAGGGTCCGTAGTGACTGTTAAC
1 GGCAGGGTCCGT-G-G--TGTTAAC
42288 GGCAGGGTCCGTGGTGTTAAC
1 GGCAGGGTCCGTGGTGTTAAC
42309 GGCAG
1 GGCAG
42314 CGGCCCCTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
21 24 0.52
22 1 0.02
23 2 0.04
24 1 0.02
25 18 0.39
ACGTcount: A:0.18, C:0.19, G:0.42, T:0.21
Consensus pattern (21 bp):
GGCAGGGTCCGTGGTGTTAAC
Left flanking sequence: Indices 41742 -- 42241
TTGATCATCTCGCCGTTCCAGATGTCCTTGCACGACTCGGAGAACGGCCGCAGCACGTACTCCAC
GTGGGCGTCAACCGGCTGGATGTGCTGCCACTCGTCGTACTTGGTCAACACCCGGTGGTTGAGAA
GCGAGTCCAGCGCCTGCAACAGCGTGCTGACAAACTGTTGGTTCTTGCGGATGTACACAGCGGTG
TAGTAGGTCAACAGCAGGGCTAAGAGCACCCCGCCAAGAAACCCGTGGATCCGTCCTCCCATGGT
ATGTGATAGTAAGGGGTAAAGGCTTTCGGTCGCGCTTTGGTTGGTCGCGAAAATTTGCAGCACGG
GTGGTTAGCTCAGAGATGTAGGAGAGAACTAGGGTATCGAAAACTAGGTTATGGGTTTGGTAGGG
GAATACTGGGGACAATGGGGCGACCACCGTGTGTTTTTCGGTTGGCATTCCGAGGGTCCCTGTTT
GTGTCAGTGAAAAATTGGATCTGTAGACGACCTGTGTCGCAGGCG
Right flanking sequence: Indices 42314 -- 42813
CGGCCCCTGATATTGAAATTGTCTGGGGAAGCTAAGCCTGGGGCTTGTTTTTCCGGGGCTGTGGT
GGCATGGTGGCTTGCGCACCAGCGATAGCCCCCAGGCGTACACTGACTCTCCTCTCTCGCTGCGC
TCGTCAATTCTCTTACACAAACACCACGCACCTGTGTTTTCCGTTAGTTTCGTAACTAGTTTAGT
GCTATTGTTTCAGAGTCTCGACCCGGACATTTTCCGAACAATAGCCGCTATCAATCAAGGACAAA
GTAAGCCCCGTCGCCCCCACGAACGGCCCACAGGTCGGAATGCACTGATAGCAGACCACCGGTAG
TGTTTATGCCCCCGGTTCTGCCGGCAGGCGGCACCCGGGGTTATTCACTTTCGGAGTTAGCACCG
CTATCGTCTCGTCCCAATCGGGCAATCGCGATGCCGCCAGAAAGCACCCGCTTAGCATGAAGCAG
CTACGACAGATTAACGTGGCTCAGCGCGCAGTTACGAAAGGAGCA
Found at i:56856 original size:59 final size:59
Alignment explanation
Indices: 56760--56873 Score: 194
Period size: 59 Copynumber: 1.9 Consensus size: 59
56750 GAGCGAATCT
56760 ACCAGTTTGATCCGCAAGACGAGACAGCTTTACAGTAATAGACTAACTAATGAGAATAC
1 ACCAGTTTGATCCGCAAGACGAGACAGCTTTACAGTAATAGACTAACTAATGAGAATAC
* *
56819 ACCAGTTTGATCCGCAAGACGA-ACCAGCTTTATAGTAATAGACTAATTAATGAGA
1 ACCAGTTTGATCCGCAAGACGAGA-CAGCTTTACAGTAATAGACTAACTAATGAGA
56874 CTTAGGAGGC
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
58 1 0.02
59 51 0.98
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (59 bp):
ACCAGTTTGATCCGCAAGACGAGACAGCTTTACAGTAATAGACTAACTAATGAGAATAC
Left flanking sequence: Indices 56260 -- 56759
GGGGCTCCAGGAGACATCCCTGCGCAGTGTTGCCCTTAATCCACAGCTCCAGCTCACGCTCAACT
TGTCGCCGCCCCACCACTACCCTGAGCCCCAGATCCCGTTCTTTCAGGACTTGAACAGGATGATG
CAGGTCCAGCCTAATCCCCAGAGCGTGGCCAAGTCGCTAGCGTTTTCGATCAAGGCTATGGACTA
CAACCTATGTGCGTGTGCCCACGATCAGAGTGACGTGCCCTTTCATCGGTTCTTCCACCACCTTC
CGCTAGCGCTTCACTGGCTCGTGTACGGTAAGAACCCCCTGGCATTGGCCTTGCTCAACGTCCAC
TGTGCGTTTGCCCTCATGTTTGAGTTTTATCTACAACGCAAGGCGAATATTTGGGTGGACTACAT
GGAGTGGTACCGCCAGTGCCGTGGTGGCGAGTGGTTTGTGCCGGGAGAGGCTGGGTTGTACCAGA
TGGCGGTGGTGGACGAGCATATCGTGTCGAACTTTGAGCGAATCT
Right flanking sequence: Indices 56874 -- 57373
CTTAGGAGGCTAGAAATGTGGTAGGGTGTGACTGTGAGATGATTAGTTGAAGTTACTGGTATAAA
ACGTGAGGAATACTACGAACTTGACACTTACAAATATCCACCACGATTTTCAAACGATGATGGTG
ATCTTTTGCATGATGTCGCTACTCTGAGAACACGTAATCCATTGTACTCTGGCGACATTTGGCGA
CGGTTGCTGATCGATTTGTAATCGACTGCTCCCCCATCTGTAGTCGTAACCTGGACCTAGACCGT
ACACCCACACTACCCGGGCAAGAATTGTCGGGCGCCAAGACCTTCTTCGATACATACACCAATCA
TAACACGCCCAACTTCCCCTCCCTCCCCCATCCACGCATGAGTCATGGCCCATCCCTTTACGAGA
TTTTCTTTTACCATCCCTACAGATCACAAAACTGATCTCTCGCAAAATTGTACAATTGTACCAAA
AAGTGACAAAACCAACCCCCTACCCCACAAACGTGTACACACACT
Found at i:68350 original size:28 final size:28
Alignment explanation
Indices: 68318--68372 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
68308 GCTCGTGAAG
*
68318 AGAGCTTGTAGCGAGCTGATTTGCAAAT
1 AGAGCTTGTAGCGAGCTGATCTGCAAAT
*
68346 AGAGCTTGTCGCGAGCTGATCTGCAAA
1 AGAGCTTGTAGCGAGCTGATCTGCAAA
68373 GCTTGTAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (28 bp):
AGAGCTTGTAGCGAGCTGATCTGCAAAT
Left flanking sequence: Indices 67818 -- 68317
CCAACACCGGTTGAAGTCGCGCTGGATCACGCTCTGCCACTTTTTTTCCGCCTCTTCCTCGGTGG
GACCCAACTTGTACCCAACGTCCTCCTTCTTCTTGAGCTTCATCGGAGGGTCGACATAGTCAATG
GTGAGACCGTGTTTCGCAAGCATGGCCTCGAGTTTGCGGGACCGCAGAGCCAACCGCTTGCCATT
CTGGAGAAACCCTGGGAGAAACAACACCTTCATTGCTTGGACAATTGCATGTGGTTGTCGTTAGC
CCCACATTTCGGCAAGTACTGCAGGTAGGACGACAGAGCCCGCGGAGCTGGTAGCTAATGATAGA
GATGAGAGGTGGTGGTTGGACCCTGGAGTGGGCACAATGTGGCACGTTTGTTGTTACTACAATTA
GTAGCTTGTAATTGTGTGTGAACCAGCCGCGCTTATAGAAAGTGTTCTTCGATGGGATCACTGTG
CCTAGACGGTCGGATACCGGAGCCAACTCTTGCTGGCTCGTGAAG
Right flanking sequence: Indices 68373 -- 68872
GCTTGTAACAATCAGTCCATGTGTCTTCATGCAGACTCAGGTGGGGACGAAGTAATTAGACGTTC
ACTGTGATGAAATCACGGAGACTGTGAGCTGAGCCATCCCTCTACATGTGACCATTACTTGCGGA
AAGCTAGGCTGTTGAGTTCGTAATTCGGTACCACTACTAAAACGGGACGGTCGAGCTCAAATCGA
CTTTTAAAGGGCATACAGGCAGATAAAATCTATTAATTATTCGGGATCAACTGGTTTGAGCAAAC
TCAATGCTCCATTTTCTCCTCTTTGATTTGTTAATGTAGTGTGACTTATACTCCCTACCCTATGA
TCCCAACGCCCCCAATCGCTTGGGCCAACAAATGGTCTAGACTGTCCCGAAGGCATGTTGACGTT
TACTCCCCAAATAGGAAGGTCACGCGAAACTGTCACAGAAGCACCAAAGGGCTGAGAAACGTATG
ACCCGTGAGAACGCTGGGCTGAGCTGCAGCAGTGCTGGTGTATGC
Found at i:80436 original size:54 final size:54
Alignment explanation
Indices: 80346--80526 Score: 299
Period size: 54 Copynumber: 3.4 Consensus size: 54
80336 AAAAGACTGC
*
80346 CCTTGTTTGTCTCAGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
1 CCTTGTTGGTCTCAGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
* * *
80400 CCTTATTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTTCCAAATGCGGGCGTGT
1 CCTTGTTGGTCTCAGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
* *
80454 CCTTGTTGGTCTCGGTCTTCCCAGCACCTAAAGGCTTCCCAAATGCGGGCGTGT
1 CCTTGTTGGTCTCAGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
*
80508 CTTTGTTGGTCTCAGTCTT
1 CCTTGTTGGTCTCAGTCTT
80527 GCCAAAGCCA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.16, C:0.30, G:0.24, T:0.30
Consensus pattern (54 bp):
CCTTGTTGGTCTCAGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
Left flanking sequence: Indices 79846 -- 80345
AGCAGTAGCGTCGCTGGAATCGTCAGAGTCGGATCGCGGATTGGTTTCTGCGGGCTTCTGACCAA
AGGGCAGGTCGAGAGTGGGTTTCTGCCCAAAACCCTGGCCAAGCTTCTTTCCAAATCCAGCAAAA
GGGCTTTCTTTGTTATCGCTGCCAGGTGTGGCCTCTTTGGGGAAATCGGGTTTCGATTCCGGTTT
GGAACCAAAGAGAGGAGCCTGGTTGTTGAAGCTAGATTGACCAAACGGGGTGGTAGTATTTTTCT
TTTCGTCGTCCTTTTTCGTGTCCTCAGAGCTGCTTGTCTTGGGGGTAGACTCCGTTGCCTCCTGG
GGCTTCTGACCAAAGACGTAGCCAGGTTTGGCTTCAAAAGTGCCCTCCTTCTGTTCCGTGGGCTT
TTGGCCAAACAGAAAGCCTGGCTTCTTCTCGTAGAGGTCGTCGGCACTTTCCTTGCTGAGCGAGC
CCTCGGCCTTGCCAAAGCCCTTGGCAGAACCTCCGAAAAGACTGC
Right flanking sequence: Indices 80527 -- 81026
GCCAAAGCCAGAGAATGCACCACCCTTCTTTTCTTCGGCCTTACCAAACGCACCGAATGGGCTCT
CCTTCTGCTCTTCCGTCTTGCCAGAGGCGCCAAAAGGTTGGCCAAACTTGGGGGTGTCCTTGGAT
GACTCGGTCTTGCCAAAGGCACCAAACGGATTCTCCTTCTTCTGCTCAGTCTCTCCACCGATGGC
GTTCTCCTTCGGCGCTCCCATCTCCTCGGTACTTCCAAACGACACTGATTTCTTCTTCGTTTCAG
TGTCAGGCTTTTCGCTCTTACCAAACAGCGCAAACGGGCTGGGTTCCGAGCTCGTTTTGTTCTGA
GCAAATTTGGCAAAGGGGCTCTCCGTGCTCTCGGCGGGCTTCTGGCCAAACGGCACTGGCTTCAG
ACCAAAGGGACTGTCCTCCTTGTTGAAAGAGCCACCAAACAGGCTCCCTTCCTTTTTCTCGCCCA
TGGATCCAAAGGGGCTCCCTTCGTTGTTCGATAAGCCACCAAACG
Found at i:81277 original size:15 final size:15
Alignment explanation
Indices: 81259--81294 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
81249 ATCCGGTGTT
81259 ACCAAACCCAGCACC
1 ACCAAACCCAGCACC
81274 ACCAAACCCAGCACC
1 ACCAAACCCAGCACC
*
81289 GCCAAA
1 ACCAAA
81295 TCCGCTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.50, G:0.08, T:0.00
Consensus pattern (15 bp):
ACCAAACCCAGCACC
Left flanking sequence: Indices 80759 -- 81258
AACGACACTGATTTCTTCTTCGTTTCAGTGTCAGGCTTTTCGCTCTTACCAAACAGCGCAAACGG
GCTGGGTTCCGAGCTCGTTTTGTTCTGAGCAAATTTGGCAAAGGGGCTCTCCGTGCTCTCGGCGG
GCTTCTGGCCAAACGGCACTGGCTTCAGACCAAAGGGACTGTCCTCCTTGTTGAAAGAGCCACCA
AACAGGCTCCCTTCCTTTTTCTCGCCCATGGATCCAAAGGGGCTCCCTTCGTTGTTCGATAAGCC
ACCAAACGGACTGGCTTTACCCTGGCCCATCGCCGCAAAACCCAGGGCACCCGAGTACGCGCCAA
AACCAGACTTGGCCGAAGACTCTTGAGTCTTCCCAGACTCTTGGGGCTTTGCTCCAAAGGACAGG
GCGCCAAAGGCCAGCGGAGGAGCATTAGGGTCAAACTTCGACCCGCCGAGCTGGGCCGCAAACGG
AGACGAGGTGTTGGTGGTTGTCGGTTTAGCGCCAAATCCGGTGTT
Right flanking sequence: Indices 81295 -- 81794
TCCGCTTTTGTTGTCCTTGTTCCCAAATCCAACGCTGCCAAACCCCTGTGAGCCTGAGTTGCCAG
CAGGTTCTGTGGTAGCCTTCGATTCAGTGGACAGTGCCAGGTTGCCAAAGGCACCAAAAGCGCCC
TTACCCTCATCAGGCTTTGGGCCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCGCCAAAAGCGCT
CTTGCCCTCATCAGGCTTCGCGCCAAAAGCGCTCTTGCTCTCATCAGGCTTCGCACCAAACTTGC
CAAGAGGAGCGCCAAAAGGCGAAGACGCCCGGTCGACGGTACCGCTTTGGACACCCTTGAAAGCG
TTCGCCAGGCTCAGTCCAAACGGGTTGTCGCTCTTGCCAAATGGGTTTTCCTTGGGCTTTTCCCC
AAAAGCTCCGAAGGGGGAGTCCTTGGGTTTCTCGCCAAAGGCACCAAAGCCTGTTGGCTTCGTTT
CCTGACTACCAAACGCCAGTTGGGCCGGCTCCTTCGCTTCTACGC
Found at i:81455 original size:33 final size:33
Alignment explanation
Indices: 81413--81549 Score: 220
Period size: 33 Copynumber: 4.2 Consensus size: 33
81403 GCCAAAGGCA
* * * *
81413 CCAAAAGCGCCCTTACCCTCATCAGGCTTTGGG
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
81446 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
81479 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
* *
81512 CCAAAAGCGCTCTTGCTCTCATCAGGCTTCGCA
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
81545 CCAAA
1 CCAAA
81550 CTTGCCAAGA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 98 1.00
ACGTcount: A:0.21, C:0.38, G:0.20, T:0.21
Consensus pattern (33 bp):
CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
Left flanking sequence: Indices 80913 -- 81412
TCAGACCAAAGGGACTGTCCTCCTTGTTGAAAGAGCCACCAAACAGGCTCCCTTCCTTTTTCTCG
CCCATGGATCCAAAGGGGCTCCCTTCGTTGTTCGATAAGCCACCAAACGGACTGGCTTTACCCTG
GCCCATCGCCGCAAAACCCAGGGCACCCGAGTACGCGCCAAAACCAGACTTGGCCGAAGACTCTT
GAGTCTTCCCAGACTCTTGGGGCTTTGCTCCAAAGGACAGGGCGCCAAAGGCCAGCGGAGGAGCA
TTAGGGTCAAACTTCGACCCGCCGAGCTGGGCCGCAAACGGAGACGAGGTGTTGGTGGTTGTCGG
TTTAGCGCCAAATCCGGTGTTACCAAACCCAGCACCACCAAACCCAGCACCGCCAAATCCGCTTT
TGTTGTCCTTGTTCCCAAATCCAACGCTGCCAAACCCCTGTGAGCCTGAGTTGCCAGCAGGTTCT
GTGGTAGCCTTCGATTCAGTGGACAGTGCCAGGTTGCCAAAGGCA
Right flanking sequence: Indices 81550 -- 82049
CTTGCCAAGAGGAGCGCCAAAAGGCGAAGACGCCCGGTCGACGGTACCGCTTTGGACACCCTTGA
AAGCGTTCGCCAGGCTCAGTCCAAACGGGTTGTCGCTCTTGCCAAATGGGTTTTCCTTGGGCTTT
TCCCCAAAAGCTCCGAAGGGGGAGTCCTTGGGTTTCTCGCCAAAGGCACCAAAGCCTGTTGGCTT
CGTTTCCTGACTACCAAACGCCAGTTGGGCCGGCTCCTTCGCTTCTACGCGCGTTTGTTGCTCGG
CCGAGCCCACTGACGCCCCTCTTTTGGCCTCCAATGCGCGGATTTCTCGCTGTAGATCGGCGTGG
CCTCCTTCGATGGCTTCTTTATCAAGCACAGACCAGCCATAGAGCCGTCCATCATCGAGCAAAAC
ATACAAAACGGGCACCCCGGTCACAGAGTCTTTGCCGGGCCAGGGGTCATACACCTCGCGCGTGG
TCTGCGTGGGGTCGATAAACACACCCAAACACGCGGTGTCGTCGA
Found at i:83538 original size:18 final size:18
Alignment explanation
Indices: 83504--83553 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
83494 TTGAGCTAAG
*
83504 CTTTATTTTCGCGTTGCA
1 CTTTATTTTCACGTTGCA
83522 C-TTATTTGTCACGTTGCA
1 CTTTATTT-TCACGTTGCA
83540 CTTTATTTTCACGT
1 CTTTATTTTCACGT
83554 ATTCCTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 6 0.21
18 17 0.59
19 6 0.21
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.50
Consensus pattern (18 bp):
CTTTATTTTCACGTTGCA
Left flanking sequence: Indices 83004 -- 83503
CTTCCGGAACCATGAGCTGGGGGGGATTGGGTGTTGTTTTGGGGAGGTTGGTGGTGGTTATGATT
TTGTTGCGCAGTGCGACAGGGTGCAGAAGGGTGTGAAGGCGGAAGGAAGAAGTGGGAACAGGTAG
TTAAAGGAAGGAGAGGGGGTTTGTGGAGCAGTGTTTAATGGATAAGGTTGTGTGGGCTTTATGAA
TTTGGTTGAGGCAATTGGGCTGGGTGGGGTTTGGTTGGGTCTTGTAGACATGCGGCTACACACTG
GTGAGTAGTGAGAAAAGTAGGTAAGAGGCCGAGTTGAAAAGGATAAGGGTGGAAAGGAGGAATAG
GTACTCTAGCGAAGTATAGGAAGAATGCGAAATGGTGGACTGTTGAGTGTTTTTGCGGTTTAGTG
GCAATTGAGCTGTGCCAAGTACGATCTAATGAAGAACAATTTGGTAACATGATATGGGTGTGGGT
GGGTGTAAACTTTGAAGAGATGCTAAGCGGAGCTCTTGAGCTAAG
Right flanking sequence: Indices 83554 -- 84053
ATTCCTTTCTTCGTGGTATTCTCTGCTTGGCCACCACCAAGTTAGACGAGCAAATAGCCACCAGC
CTAAACCCCATAAACTCCACAAAACCACCCAAAAAGATATACTCTTCGTCACCTCAAACAACACC
CAAGCTCATACACGTCCCCCCTAGTTCCCCCGAGCCGCGACCTTCGCGCTTTCCCCACCCCGTTC
TTCCCCACCACGCTCCACCACCTCTTTTTCACACCGCGAATTCTAACGCGTCATGGACACCGACC
CGATCCAAATCGGGTTCTACGACCCGTTCCTGACGGCGCCCACCGCAGACTTGGAGGCAAAGTTC
CCCCTCACCAACCTCCACTGGAAGTACCACCATCAAAAACCGGTGCAGCTGATCGCCCGTCTCCC
GGTGTCCCTCACCGAGGAGGTGCCCAAGACCCGGCCACCTCACCATCCACCAACCACAGCGGTTT
ACGCTCGGATAATGTTTGTGCGCTACGACTCGTTGGACCAGTACC
Found at i:85353 original size:18 final size:18
Alignment explanation
Indices: 85293--85360 Score: 91
Period size: 18 Copynumber: 3.8 Consensus size: 18
85283 CTGGAGGACG
* * *
85293 CCAAAGGCTCTCAGGAGG
1 CCAAAGACTCGCAGGAGT
* *
85311 CCAAAGGCTCTCAGGAGT
1 CCAAAGACTCGCAGGAGT
85329 CCAAAGACTCGCAGGAGT
1 CCAAAGACTCGCAGGAGT
85347 CCAAAGACTCGCAG
1 CCAAAGACTCGCAG
85361 ACCCAGTCTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.31, C:0.29, G:0.28, T:0.12
Consensus pattern (18 bp):
CCAAAGACTCGCAGGAGT
Left flanking sequence: Indices 84793 -- 85292
GGACTCGTTGACCGTGTACGAAGAGATAGGGGACGAGTTGGCGGGGACGGGCCATCTCGAGCTTC
CTGAGAAGCTTCTGCTCGAGCTGTACCCGCCGTTCGCTCCCTGGACCGAGCACATGCTGGCGTTC
GATACCCGGTGCCAGGTGTTTGCGTCTCAGCTGCGCTTGTTGCGGTCTCTAGCGGCCCAGGCGGC
CACTGCGTCGCTCGCAGCGATCTACGTGTCCCGGTTGTACCAGAAGTTGCTTGATTTCTTGCAGG
GGTTGGTGCAGCGGTTCCGGCTGGCCCGGGTGGCGGAGTTTGCCGTGAGACTCATAGATTTCTAC
ATAGAGGGCGAGGCTGTGAGCGACGAGAACGTCGAGTTTCGGGGCGAGCTCCGGATGTTTGAGCG
GCTGCAGTACTTGGACATTGCCACGCGGGTGTTCCGCTACCCGGTGATGGGAGCCACGGGGTGTG
AGATCAGTCTAGATGACGAGGATCAAGGCGGTGTTCTGGAGGACG
Right flanking sequence: Indices 85361 -- 85860
ACCCAGTCTGGAGACGAGAAACTGGAAGACCTGAAGGACGAAGGCGAGCTGGCTAACCCCATTCT
CCGTGCCTCTGGTCTCACCTACCCGCCTCTCTTGAAGGCGATGGCCCTGGCCCAGACGTTCTACG
CGTGCTACGAGGGGCTCACCGAGGCGGCAATGGCTGACTTTGTCAAGTGCGGTCGCGAAAAGACC
GTCGACATCCTTCTGATTGACTTGGCGCTCATGGCGTACCAGCAGGGCAACTACGGCCAGGCGCT
CCGGGTGATCCAGGACCTGTACGACGACTTCATTGCCAACGGGTGGAACTTCATGGGCGGCTTTC
TTCTTGAGGTCTACATGGAGTGCCTTGAGAAGACGGGCGGGGACTCGAAAGCCCAGACGATGGGG
GCGCTCAAACTCTTCCAGACCATGCTCAAGGGCATTGATGGCGGGATAGGGATCAACAACTACGG
TGCCACAAAGCCCCTTGCGTATTTCGAGCGGCTCGTGGCGAAAAT
Found at i:90265 original size:22 final size:23
Alignment explanation
Indices: 90227--90272 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
90217 CTTCTTGCTG
90227 TTTGGCTGGTCTCGAGGCATTCT
1 TTTGGCTGGTCTCGAGGCATTCT
*
90250 TTTGGCT-GTCTTGAGGCATTCT
1 TTTGGCTGGTCTCGAGGCATTCT
90272 T
1 T
90273 GCGATTTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.09, C:0.20, G:0.28, T:0.43
Consensus pattern (23 bp):
TTTGGCTGGTCTCGAGGCATTCT
Left flanking sequence: Indices 89727 -- 90226
TGTCTCCACCTTGTGCGGCTCGCCTGCACATAATTTTCACTATTTAAACAGCGCCATCTTCATTT
TCAGTTCCCTAACTTTATGCAAGGATGTTATTTGTTCAGTGAGGATTCGTCCGAGAACAGATTTT
TGCTAGTTGCAAACTACATCTGACAGCTCCAACCGCCTGGCCTCGGCCTTGGGCGGACGGGAATT
TTTGGTTCTTACTTGCAAAATACTTTTTTTGAAGGTTTTGCCACCGTTTTTCCCCGTTGGCGACG
GTGGGGCCATCGGCTCCCGCGGGGAGGAATGTCGCCTGGTGCCTCGCTCGGCCCGCACGCTTGCG
GGTCTTGAGCTGGATACAACATTTTGTAAAGGGCTAGAGTAACGGGATCTTTGAGTACGATGCCG
CCAGACAAGTGGTGTTATTGTAATTACTGAACCCAACAAGTGTATGATTGTAGGTATTCTGCTGC
GTAGTACGTGATAGCCAGCAGCTTTGGTATTGAGGCTTCTTGCTG
Right flanking sequence: Indices 90273 -- 90772
GCGATTTGGCAGGTTTTGAGACTCCACACTAGGGCGCAGCCACCTTGAGTTGCATATTTGAATCC
GGCTATCTGGTTTATTTTTATACACTTTGGTCTAGTGCACCCTACTCGTACATTGAGTTGTTTCG
GTACATTGACACATCAGGCGAGGCAGACGTGAGTGAGGGGCCATCCGTGGCATTCGTCTGGTTTG
AACTATATCTTCCGTATCATGAGTACTACTGTACCTTCCCCACTATAATTAACGGCCATAATACA
TCCTCTCAACCCAACTTTCCCCACTCATCTTCTACACCACAGCCGCGCGTCTGGCACCCAAAACT
ACACCTAAACTCCATTCTCACCTAAACGTCTCAACAAACAAGCCCAATCTAATTCTTCTCCTTGC
GTCGTTGAGTCTCCAACTTACATCCTCTCCACATTCCCCATCCTCCGTGTCTCCTCCATATCCTC
CCATCTCCTCTTTTCGCCTCTCGTCCCCTCCATCGTTGCTTAAAT
Done.