sallet_2.scaffold.fasta.s7.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold22
Parameters: 2 7 7 80 10 50 500
Length:  55111

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303--350	11	4.1	11	76	12	51	6	60	31	2	1.33
1074--1110	18	2.1	18	94	0	65	21	21	37	18	1.94
1350--1378	13	2.2	13	100	0	58	27	55	10	6	1.59
2264--2304	9	4.6	9	84	0	55	2	9	43	43	1.50
4282--4320	9	4.3	9	93	0	69	43	20	15	20	1.88
4295--4350	18	3.1	18	78	0	58	42	33	12	10	1.77
4281--4342	27	2.3	27	82	0	79	43	29	14	12	1.83
5811--5876	24	2.7	23	86	4	69	15	53	24	7	1.68
5819--5909	30	3.2	29	80	14	102	13	51	27	7	1.67
5819--5922	24	4.0	24	75	17	100	13	50	26	8	1.70
6106--6156	12	4.5	12	76	14	54	0	47	31	21	1.51
6743--6789	21	2.2	21	92	0	76	4	53	12	29	1.58
6732--6789	21	2.7	22	84	10	75	3	55	13	27	1.55
6882--6911	15	2.1	14	93	6	51	0	43	50	6	1.28
7061--7087	12	2.2	12	100	0	54	7	25	66	0	1.17
7585--7699	8	14.9	8	77	13	125	38	13	0	47	1.44
8640--8702	9	6.7	9	78	10	54	25	0	39	34	1.56
8653--8729	15	5.1	15	76	6	75	20	0	46	32	1.51
8859--8896	15	2.6	15	91	4	60	50	7	42	0	1.31
9396--9456	13	4.7	13	76	15	54	32	62	1	3	1.21
9405--9457	18	3.2	16	77	17	54	32	64	0	3	1.12
9405--9457	27	1.9	28	88	3	81	32	64	0	3	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9491--9515	12	2.1	12	100	0	50	8	40	8	44	1.63
9528--9577	10	5.0	10	90	9	84	20	30	12	38	1.88
10250--10274	8	3.1	8	100	0	50	52	24	12	12	1.72
10298--10351	15	3.6	15	79	0	63	7	7	51	33	1.58
10331--10409	12	6.5	12	77	13	72	11	13	49	25	1.76
10331--10409	23	3.3	23	72	11	77	11	13	49	25	1.76
10345--10431	20	3.8	22	70	17	61	14	12	47	25	1.80
10344--10431	11	7.6	12	71	16	53	14	12	47	25	1.79
10956--11022	21	3.2	21	87	4	91	40	4	25	29	1.75
11374--11415	10	4.2	10	100	0	84	50	0	30	19	1.48
16179--16215	16	2.3	16	100	0	74	24	45	8	21	1.78
16188--16224	16	2.3	16	90	0	56	27	43	5	24	1.76
16359--16413	19	2.8	20	86	5	85	30	34	1	32	1.69
16359--16420	20	3.2	20	86	4	90	32	35	1	30	1.68
16459--16506	9	4.9	10	87	7	64	31	58	0	10	1.32
17472--17537	12	5.5	12	87	0	78	45	27	18	9	1.79
17472--17542	36	2.0	36	88	0	106	45	29	16	8	1.77
18655--18706	19	2.8	19	82	5	63	40	11	32	15	1.83
18712--18746	12	2.8	12	95	4	61	40	17	34	8	1.80
18776--18868	11	8.5	11	75	10	75	44	15	26	13	1.84
18804--18865	21	2.9	22	83	9	76	48	12	24	14	1.79
18785--18855	32	2.2	32	87	5	108	43	15	28	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19073--19121	9	5.2	9	95	5	80	12	20	57	10	1.64
19386--19410	10	2.5	10	100	0	50	44	32	24	0	1.54
21902--21936	16	2.1	17	89	5	54	11	2	65	20	1.37
24084--25249	141	8.3	141	86	3	1475	27	26	25	20	1.99
29638--29807	85	2.0	85	98	0	331	28	24	22	24	1.99
35818--35864	14	3.4	14	82	5	69	23	40	19	17	1.91
35823--35875	27	2.0	27	96	0	97	26	39	18	15	1.90
36644--36671	9	3.1	9	100	0	56	21	67	0	10	1.20
36694--36929	13	17.4	13	78	13	151	11	35	4	47	1.61
36802--36894	32	3.0	32	81	6	113	11	36	2	49	1.52
36866--36932	12	5.4	12	87	7	98	16	34	1	47	1.56
37329--37362	15	2.4	14	90	5	50	8	70	20	0	1.13
38743--38778	5	7.8	5	82	17	51	11	0	44	44	1.39
38743--38779	9	4.1	9	100	0	74	10	0	43	45	1.39
38730--38779	13	3.8	13	78	19	50	12	0	42	46	1.41
40502--40551	8	6.2	8	97	0	91	10	0	52	38	1.35
41813--41896	13	6.6	13	93	2	127	25	57	0	17	1.41
43451--43503	15	3.3	15	77	17	54	45	5	35	13	1.67
43473--43564	18	5.3	18	79	7	91	51	6	29	13	1.65
46257--46299	11	3.9	11	87	0	59	58	18	13	9	1.62
46257--46299	22	2.0	22	95	0	77	58	18	13	9	1.62
47092--47150	18	3.1	19	86	13	70	16	38	28	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47100--47171	18	3.8	18	88	5	99	18	38	30	12	1.87
47443--47477	18	1.9	18	94	0	61	2	34	42	20	1.66
48237--48265	9	3.2	9	100	0	58	10	20	55	13	1.68
48212--48337	30	4.2	30	80	6	141	6	23	50	19	1.71
50318--50372	18	3.1	18	82	10	67	16	3	60	20	1.51
50364--50476	8	14.5	8	75	12	74	13	5	44	37	1.66
50392--50457	16	4.2	15	90	3	87	12	9	40	37	1.74
50822--50882	29	2.1	29	87	9	88	24	27	31	16	1.96
50926--50991	16	4.2	16	94	1	109	7	46	21	24	1.76
50926--50991	31	2.1	31	91	5	107	7	46	21	24	1.76
51096--51210	34	3.4	34	75	7	103	15	34	14	34	1.89
51191--51250	29	2.1	28	81	12	68	13	35	16	35	1.88
54640--55111	48	9.8	48	91	0	730	30	25	35	8	1.85

Tables:   1

The End!