Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold22
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 55111
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Found at i:341 original size:11 final size:11
Alignment explanation
Indices: 303--350 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
293 ACGCCGACAC
303 CCGCGCCGCCG
1 CCGCGCCGCCG
* *
314 CCGAGCGCCACCA
1 CC--GCGCCGCCG
327 CCGCGCCGCCG
1 CCGCGCCGCCG
338 CCGCGCTCGCCG
1 CCGCGC-CGCCG
350 C
1 C
351 GGCCACCGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 15 0.50
12 6 0.20
13 9 0.30
ACGTcount: A:0.06, C:0.60, G:0.31, T:0.02
Consensus pattern (11 bp):
CCGCGCCGCCG
Left flanking sequence: Indices 1 -- 302
CACCCCCCCATGTCCCGCTCGGAGTTCGACGAGATCGTCGCCCAGGCGGCGCTCCCGCCCCCCAG
CGTGAGCGACGCCGAGGCGCGCTTCCGCAACAGCACCACCCACCCGGCCACCGTCGCCGACGACA
CCGCCGCCCTCCAGCGCCACTTCGACCGCTTGAAGTACGTGTACTTGCAACAGGAGACCCGCGAC
CGGTTCCTCCGCCACATCACCCAGGGCCCCGCCCCCGTGGACGTGGCCGGGGCCGAGGCGCGCGC
CGCCGCCGCCAGCGCCGAGTTGGCCGGGGTCGACGCCGACAC
Right flanking sequence: Indices 351 -- 850
GGCCACCGACGAGTGGCACCGGCACCTCGCGGACACCGCGGCGGTGCTCGACCAGCACCGCGCGC
TCGACGACGAGATGGCGCGGCTCACGGCGTCGTTGCCCCCGGGGCACGCCCAGTTGCTCGCGCTG
GTGCCCCAGACGGCGGGGGCGGGCGCCGGGGACGTCGTCGACGTGGCCCAGCGCGAGCTCGAGCT
CCGCACCGCCGGGTTGAAGCAGGTGATCGACGAGCTCAGCAACACCCAGGTGGCGGTGGACCAGT
TGCACGACGAGCTCGCGCGGTTGGAGCTGGCGATCGACGCCGAGCAGCGGGCGGTGGAGGGGTTG
CGCCGGCAGCTGGCGGACCCCGGGGCCGAGGTGGCGCAGAACAACGCCCGGGCGCGGTGGTACCG
CGACGCCGCCGCGGTGGTGGAGGAGGTGGCGCGGGTGCGGGTGCGCACGGCGGAGGTGCCACGCG
AGGGCACGGGCCCCGCGGTGCGGTTGACGGTGGAGGTGCCCGGGC
Found at i:1100 original size:18 final size:18
Alignment explanation
Indices: 1074--1110 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1064 TTCCTGGTGG
*
1074 AGCCTCAGGGTGGTCGTA
1 AGCCACAGGGTGGTCGTA
1092 AGCCACAGGGTGGTCGTA
1 AGCCACAGGGTGGTCGTA
1110 A
1 A
1111 CCTGGCGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.38, T:0.19
Consensus pattern (18 bp):
AGCCACAGGGTGGTCGTA
Left flanking sequence: Indices 574 -- 1073
GACGAGCTCAGCAACACCCAGGTGGCGGTGGACCAGTTGCACGACGAGCTCGCGCGGTTGGAGCT
GGCGATCGACGCCGAGCAGCGGGCGGTGGAGGGGTTGCGCCGGCAGCTGGCGGACCCCGGGGCCG
AGGTGGCGCAGAACAACGCCCGGGCGCGGTGGTACCGCGACGCCGCCGCGGTGGTGGAGGAGGTG
GCGCGGGTGCGGGTGCGCACGGCGGAGGTGCCACGCGAGGGCACGGGCCCCGCGGTGCGGTTGAC
GGTGGAGGTGCCCGGGCGCGCGGCGCCGCTTGTGTTGCGGTTCGACCCCGAGCACAAGCGGGTGG
AGGCGGTGGAGCCCGCGCTCGGGGTGGCGGTGCCGGTGGCGGTGGGGTCGCAGTGGGCGTTGGTG
GAGTTTGTGGCGCAGGTGGTGAGCCAGTGGCGCGAGGGGGGCGGTGGAGAAGATGGGGGGGTGCT
GAGAGATTCCTAGATTAAGCCACAAGGTGGTTGTATTCCTGGTGG
Right flanking sequence: Indices 1111 -- 1610
CCTGGCGGTGGCTTTTGCTCATGTGCTTGTCTACGAAGTGTTTTGAATATCTCCGGCTTACTCTG
TTGGTTACTTGTGGTGGTACAGGTAGCCACTGGTTCCACTGCTAAGCGGTGCCGTGGAGAACCTT
TCCAGTTTCTGTCCATGTGTTTAACGATAGACACGCCAGCACTTTCAACGTGCTTAATCTACAGT
TTTGTGCCATCTTACCCTTCACTGAGGTCCACCTGGCGCATTCACCGACACACTCACCCGACACA
CTCACCCGTTGACGCGTTCACGTGTTGACTCGTTCACCCGTGCATGCGTTCACTCGCTGCGACAC
CCGTTCTTCCGCTGTTCATAGTCCTGAATCGATGGCACTAGTTAATTTCCAGCGTATCAACGGTT
CTGTCACGAGACATAAAAAATATTCCAAATTGGGCAAATTAGACGCAGCTGGATACGATGGGCCG
ATGGATTTGCTAAAGTCGCACGGGGGTGAACATTTACGGGCGGAG
Found at i:1366 original size:13 final size:13
Alignment explanation
Indices: 1350--1378 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1340 GGCGCATTCA
1350 CCGACACACTCAC
1 CCGACACACTCAC
1363 CCGACACACTCAC
1 CCGACACACTCAC
1376 CCG
1 CCG
1379 TTGACGCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.55, G:0.10, T:0.07
Consensus pattern (13 bp):
CCGACACACTCAC
Left flanking sequence: Indices 850 -- 1349
CGCGCGGCGCCGCTTGTGTTGCGGTTCGACCCCGAGCACAAGCGGGTGGAGGCGGTGGAGCCCGC
GCTCGGGGTGGCGGTGCCGGTGGCGGTGGGGTCGCAGTGGGCGTTGGTGGAGTTTGTGGCGCAGG
TGGTGAGCCAGTGGCGCGAGGGGGGCGGTGGAGAAGATGGGGGGGTGCTGAGAGATTCCTAGATT
AAGCCACAAGGTGGTTGTATTCCTGGTGGAGCCTCAGGGTGGTCGTAAGCCACAGGGTGGTCGTA
ACCTGGCGGTGGCTTTTGCTCATGTGCTTGTCTACGAAGTGTTTTGAATATCTCCGGCTTACTCT
GTTGGTTACTTGTGGTGGTACAGGTAGCCACTGGTTCCACTGCTAAGCGGTGCCGTGGAGAACCT
TTCCAGTTTCTGTCCATGTGTTTAACGATAGACACGCCAGCACTTTCAACGTGCTTAATCTACAG
TTTTGTGCCATCTTACCCTTCACTGAGGTCCACCTGGCGCATTCA
Right flanking sequence: Indices 1379 -- 1878
TTGACGCGTTCACGTGTTGACTCGTTCACCCGTGCATGCGTTCACTCGCTGCGACACCCGTTCTT
CCGCTGTTCATAGTCCTGAATCGATGGCACTAGTTAATTTCCAGCGTATCAACGGTTCTGTCACG
AGACATAAAAAATATTCCAAATTGGGCAAATTAGACGCAGCTGGATACGATGGGCCGATGGATTT
GCTAAAGTCGCACGGGGGTGAACATTTACGGGCGGAGTTTTGCCGATATCGTCAGTCTTCTCAGC
ATTTGCGTTTACAAACTTTTCTCAGCAAGCTATTGTTCTCCACGCTACTATGCTAAAAGAGGGTA
TGGCTCTTACAAGACTGTTACCACTCACAAACTGACCGAATCGTTACTTCGTCACTTCTGGTGGC
CCGCACTAGTCAAGCTACTTCAACACCACATATTCGCTAAATACGCATTAAAAAGATGATTGACA
TACTTAATGCTTACCAGAACAATGTAATTACTTCTCCCGAGAACA
Found at i:2280 original size:9 final size:9
Alignment explanation
Indices: 2264--2304 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
2254 TTGGACAACA
2264 GGGTTTTGC
1 GGGTTTTGC
*
2273 GAGTTTTGC
1 GGGTTTTGC
*
2282 GGGCTTTGC
1 GGGTTTTGC
*
2291 GGGTTTTGT
1 GGGTTTTGC
2300 GGGTT
1 GGGTT
2305 GGTACCCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.02, C:0.10, G:0.44, T:0.44
Consensus pattern (9 bp):
GGGTTTTGC
Left flanking sequence: Indices 1764 -- 2263
GTGGCCCGCACTAGTCAAGCTACTTCAACACCACATATTCGCTAAATACGCATTAAAAAGATGAT
TGACATACTTAATGCTTACCAGAACAATGTAATTACTTCTCCCGAGAACAGATCATAATCATTCA
TCATACAACATCATCTATAGAACGCACAGTCTCCTCACTTCTCTGATTACCACTGTATGATGTTG
GTTGATTTTGGAGGTTTGGTGTGGCATAGAATTGCTGAAAACGAGTTGGACGGGACTGGTCGATA
CATTGAACGTGCGGGTATACACCGTAGCCGGGCGTGTTCGGTTGGGGCGAAGGGCTCATAGGTTG
AGGCGAAAAAGAAGGTGCAATGACATATCCATTTGCTGGGTAAGGAAGGGGCCGTGGGTAATATT
GGACCTGTGCCGGGAACGCTGGTGGGGTTTGTGCACTCACAAACGGATGCTGTAAGGACGCCTGG
CCTTGAAATTGCGAGTGGTAGGAAGAAGGATGGGCTTGGACAACA
Right flanking sequence: Indices 2305 -- 2804
GGTACCCATTAATATCTGTCCTTGAGGAATCCTTGACATAATCTGTTCTACAATGGCGTCACAAA
CCTTGTCCAGCACTCTTAGTTGCGTTTTCGCTCGCTTCTGAGCCTCCTCGTGTCGACTAGGAGCC
CGCTTGGTTCTCGTCACTGGCCGACTTTCCACGCTAGCGTTATCGTCCTGTGGTTGTTGCGAAGA
AACCTTTTGGGCAATTCCAACGCTCCTCATAAGGTACCAATGCTTGTCGAAAAGGTCCTCTGTCA
ATTGCCTCTCCCCTGGGCCACCAAGTATTCTGGCTATCTCATGGGCACAGGGTATACCCATCGTG
TCCCTGAATCTCTGGGTACACGGTGGGATACTGCGATTATTGTCCCATTTTCTGAGCAACTCCAT
CGCTTCTTGCACCCTTTGAAGGGCTGCGGAAGCTATCACCCCAGCAACGTTCACGTAAAATTCCT
GCTTGTGAATTTTCAGTGGTTTATCAACTTCCCTCCGTTGAAGAC
Found at i:4300 original size:9 final size:9
Alignment explanation
Indices: 4282--4320 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
4272 GGTCAGATTC
4282 AGAACCATT
1 AGAACCATT
*
4291 AGAGCCATT
1 AGAACCATT
4300 AGAACCATT
1 AGAACCATT
4309 AGAACCATT
1 AGAACCATT
4318 AGA
1 AGA
4321 GCCACCAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (9 bp):
AGAACCATT
Left flanking sequence: Indices 3782 -- 4281
CGATGTACTGGGAGGGAACTGATTTGCAGAACAGGTGGGTGGTTGTGTTTATCGTAATTTTCGAT
TTGAGAATCGACAATCACCGGTGGCCGTCGCCGAAGCACCCAGACACCATCCGTCCTCGTGGCGT
TCATGGAGAATTTGCACTCACATCCTGTGGGACTTGACTTCTTTTGGCCGCTATCCAGAGACTTT
GCGTACCTGGTGCAAGCATAGCGGACCTTGTTCTTCCCCCCCCTCTCTCTAGCAAACCCATAGCC
CCTATGCTTTGCCCAATCGTTCACATACTCGAACAACGCCTCCTCGTCAGGCATCAGCTTGATTG
GAGGGAGTACGTTGAACTCGTCGACCTTTCTGGGTATGTCAGTGACACACTCTCTTGTGGCCTCA
AATGGTTCCAGGGGTGTTGTAGCTGTATCTTCTACGGGCTCTCTAGCTTCGTCTGATGAGGGCAG
TGCATCAGTGGAGTCTACACGGGCAGGAGCCTCTGGGTCAGATTC
Right flanking sequence: Indices 4321 -- 4820
GCCACCAGAACAACCAGAACCACCAGAACCCGCTTCTCTCGGGGCCAAGCGAACGAAGCAATCAT
CTCGCAAGTCGGCCACATCGTCGGGTCTTAAGCGATCCAGCAGGGCAGAATCCATCTGAAAGCCA
TCCTCAAAGTCGCCAACATGGACGGTCTCGCAGTTGGCTAGTGTATCAGCGTCTTGGGTATCGTC
TTCAAGCAGAGCAGCGAGATTTGCCGGAGTGTTGGTCTCCTCTGGGGACTCAGACATGAGGCTCT
CTTGACTGCGGATGTTGACAGAAAAATATTCGACGCACGCGTCTACACGCGTTCGAGACACATTC
TTTGCAAATAAGACCAAAAGAAATATATTTAAATGAAAAGCAGACGTGTTGAAGCTTCCATTGTA
GAAAAACAAATGGTTTGAAGTGAAAGCTGGTGGACCTCTTGGTTCCTTTCCTTCGACACTCGCAG
ATGGGAGTCCATTTTGGGTAAAAACACTACTGTGAACAATAGCTT
Found at i:4330 original size:18 final size:18
Alignment explanation
Indices: 4295--4350 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
4285 ACCATTAGAG
**
4295 CCATTAGAACCATTAGAA
1 CCATTAGAACCACCAGAA
*
4313 CCATTAGAGCCACCAGAA
1 CCATTAGAACCACCAGAA
* **
4331 CAACCAGAACCACCAGAA
1 CCATTAGAACCACCAGAA
4349 CC
1 CC
4351 CGCTTCTCTC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.43, C:0.34, G:0.12, T:0.11
Consensus pattern (18 bp):
CCATTAGAACCACCAGAA
Left flanking sequence: Indices 3795 -- 4294
GGGAACTGATTTGCAGAACAGGTGGGTGGTTGTGTTTATCGTAATTTTCGATTTGAGAATCGACA
ATCACCGGTGGCCGTCGCCGAAGCACCCAGACACCATCCGTCCTCGTGGCGTTCATGGAGAATTT
GCACTCACATCCTGTGGGACTTGACTTCTTTTGGCCGCTATCCAGAGACTTTGCGTACCTGGTGC
AAGCATAGCGGACCTTGTTCTTCCCCCCCCTCTCTCTAGCAAACCCATAGCCCCTATGCTTTGCC
CAATCGTTCACATACTCGAACAACGCCTCCTCGTCAGGCATCAGCTTGATTGGAGGGAGTACGTT
GAACTCGTCGACCTTTCTGGGTATGTCAGTGACACACTCTCTTGTGGCCTCAAATGGTTCCAGGG
GTGTTGTAGCTGTATCTTCTACGGGCTCTCTAGCTTCGTCTGATGAGGGCAGTGCATCAGTGGAG
TCTACACGGGCAGGAGCCTCTGGGTCAGATTCAGAACCATTAGAG
Right flanking sequence: Indices 4351 -- 4850
CGCTTCTCTCGGGGCCAAGCGAACGAAGCAATCATCTCGCAAGTCGGCCACATCGTCGGGTCTTA
AGCGATCCAGCAGGGCAGAATCCATCTGAAAGCCATCCTCAAAGTCGCCAACATGGACGGTCTCG
CAGTTGGCTAGTGTATCAGCGTCTTGGGTATCGTCTTCAAGCAGAGCAGCGAGATTTGCCGGAGT
GTTGGTCTCCTCTGGGGACTCAGACATGAGGCTCTCTTGACTGCGGATGTTGACAGAAAAATATT
CGACGCACGCGTCTACACGCGTTCGAGACACATTCTTTGCAAATAAGACCAAAAGAAATATATTT
AAATGAAAAGCAGACGTGTTGAAGCTTCCATTGTAGAAAAACAAATGGTTTGAAGTGAAAGCTGG
TGGACCTCTTGGTTCCTTTCCTTCGACACTCGCAGATGGGAGTCCATTTTGGGTAAAAACACTAC
TGTGAACAATAGCTTTCTCGCATAATAGACAAAAAATATCAGCAA
Found at i:4339 original size:27 final size:27
Alignment explanation
Indices: 4281--4342 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
4271 GGGTCAGATT
** * *
4281 CAGAACCATTAGAGCCATTAGAACCAT
1 CAGAACCATTAGAGCCACCAGAACAAC
*
4308 TAGAACCATTAGAGCCACCAGAACAAC
1 CAGAACCATTAGAGCCACCAGAACAAC
4335 CAGAACCA
1 CAGAACCA
4343 CCAGAACCCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.44, C:0.29, G:0.15, T:0.13
Consensus pattern (27 bp):
CAGAACCATTAGAGCCACCAGAACAAC
Left flanking sequence: Indices 3781 -- 4280
ACGATGTACTGGGAGGGAACTGATTTGCAGAACAGGTGGGTGGTTGTGTTTATCGTAATTTTCGA
TTTGAGAATCGACAATCACCGGTGGCCGTCGCCGAAGCACCCAGACACCATCCGTCCTCGTGGCG
TTCATGGAGAATTTGCACTCACATCCTGTGGGACTTGACTTCTTTTGGCCGCTATCCAGAGACTT
TGCGTACCTGGTGCAAGCATAGCGGACCTTGTTCTTCCCCCCCCTCTCTCTAGCAAACCCATAGC
CCCTATGCTTTGCCCAATCGTTCACATACTCGAACAACGCCTCCTCGTCAGGCATCAGCTTGATT
GGAGGGAGTACGTTGAACTCGTCGACCTTTCTGGGTATGTCAGTGACACACTCTCTTGTGGCCTC
AAATGGTTCCAGGGGTGTTGTAGCTGTATCTTCTACGGGCTCTCTAGCTTCGTCTGATGAGGGCA
GTGCATCAGTGGAGTCTACACGGGCAGGAGCCTCTGGGTCAGATT
Right flanking sequence: Indices 4343 -- 4842
CCAGAACCCGCTTCTCTCGGGGCCAAGCGAACGAAGCAATCATCTCGCAAGTCGGCCACATCGTC
GGGTCTTAAGCGATCCAGCAGGGCAGAATCCATCTGAAAGCCATCCTCAAAGTCGCCAACATGGA
CGGTCTCGCAGTTGGCTAGTGTATCAGCGTCTTGGGTATCGTCTTCAAGCAGAGCAGCGAGATTT
GCCGGAGTGTTGGTCTCCTCTGGGGACTCAGACATGAGGCTCTCTTGACTGCGGATGTTGACAGA
AAAATATTCGACGCACGCGTCTACACGCGTTCGAGACACATTCTTTGCAAATAAGACCAAAAGAA
ATATATTTAAATGAAAAGCAGACGTGTTGAAGCTTCCATTGTAGAAAAACAAATGGTTTGAAGTG
AAAGCTGGTGGACCTCTTGGTTCCTTTCCTTCGACACTCGCAGATGGGAGTCCATTTTGGGTAAA
AACACTACTGTGAACAATAGCTTTCTCGCATAATAGACAAAAAAT
Found at i:5838 original size:24 final size:23
Alignment explanation
Indices: 5811--5876 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 23
5801 TGCCGGCACC
*
5811 CGCACGACCACCGGCACCGCCGTT
1 CGCACG-CCACCCGCACCGCCGTT
**
5835 CGCACCGGTACCCGCACCGCCGTT
1 CGCA-CGCCACCCGCACCGCCGTT
*
5859 CGCACCGGCACCCGCACC
1 CGCA-CGCCACCCGCACC
5877 CGCACCGCCG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.15, C:0.53, G:0.24, T:0.08
Consensus pattern (23 bp):
CGCACGCCACCCGCACCGCCGTT
Left flanking sequence: Indices 5311 -- 5810
TGTCCCACAACGTCACAAAACCATCAACAAACCAACCATTCAGCAACACACCACCCAAAGCTCCT
CCGAAACAACACCACTCTCTTAAACCACCCTCCTACATCGTCTCCTACATGTCTCCTTTCTTTTA
TCGCACTGTCTATAAATACCGGTACGCTGTGCACTGCGCTGGCTCCTCTCTAACTGGTCGACGCC
GCCACCACGTCGTCGGGCGACATCGCCTCTATCTTCGCAAGCTCGGCCGCGTACTGCGCGCGCTT
CGCCGGGTCCACGTCCCACGTCTTGGCCACGATCAAGTCCTTGATGGTGTCCTTGAGCACCAGCC
GCTTGACCACGTTCAACAACTTGAGCTCGTTGAACGTCAAGTCAACGATCCCGTTGAGGGTCCCG
CTCCCGGGCTGCGCGGTGATCAGCCGGATGATCCGCGCCACCATGTACCGGTTCTCCACCATCTT
CTTCTTGGTCTGGAGCATGTTGGGCTGGCCAAGGGTGCCGGCACC
Right flanking sequence: Indices 5877 -- 6376
CGCACCGCCGTTGGCACCGGCACCGGCACCGGCCACGTTCGCACCGCCTTGCGCCCCTCCCGCCC
CCACCTGCCCCGTGCGCGCGCCAAAGAAGGGGTCGATGGGCAACCCCTCCACCAACGCCTCCACC
CGGTAGTCGCGGAAGAACACCGGGTCGTCCGCGCGCCAGTGGGTGGCCACCACGAGCTGGCGGAT
GGACGCGGGCCCGCGGCGGTCGTCCTCGATGAACCCGTCGTCGTCCCCGTCGCCGCCCGCGTCGT
CGTCGTCGTCGTCGCCGTCGGTGTCGATGTCCTCGCCGTCACTCCCCTCCTCGCGCCACTCCAAG
TCGGAGTCGTACTCGTAGTCGACCCCGGCGAGCTCCGCGAGCGGGGGCGCCCCGGGGGGGCGGTG
CTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGA
ACTTGAGGGGCAACCGCGCCACCATCGCCGCCACGGTGGCGGTCG
Found at i:5853 original size:30 final size:29
Alignment explanation
Indices: 5819--5909 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 29
5809 CCCGCACGAC
*
5819 CACCGGCACCGCCGTTCGCACCGGTA---
1 CACCGGCACCGCCGTTCGCACCGGCACCG
5845 C-CC-GCACCGCCGTTCGCACCGGCACCCG
1 CACCGGCACCGCCGTTCGCACCGGCA-CCG
* *
5873 CACCCGCACCGCCGTTGGCACCGGCACCGG
1 CACCGGCACCGCCGTTCGCACCGGCACC-G
5903 CACCGGC
1 CACCGGC
5910 CACGTTCGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
24 20 0.36
25 2 0.04
26 1 0.02
28 1 0.02
29 4 0.07
30 27 0.49
ACGTcount: A:0.13, C:0.52, G:0.27, T:0.08
Consensus pattern (29 bp):
CACCGGCACCGCCGTTCGCACCGGCACCG
Left flanking sequence: Indices 5319 -- 5818
AACGTCACAAAACCATCAACAAACCAACCATTCAGCAACACACCACCCAAAGCTCCTCCGAAACA
ACACCACTCTCTTAAACCACCCTCCTACATCGTCTCCTACATGTCTCCTTTCTTTTATCGCACTG
TCTATAAATACCGGTACGCTGTGCACTGCGCTGGCTCCTCTCTAACTGGTCGACGCCGCCACCAC
GTCGTCGGGCGACATCGCCTCTATCTTCGCAAGCTCGGCCGCGTACTGCGCGCGCTTCGCCGGGT
CCACGTCCCACGTCTTGGCCACGATCAAGTCCTTGATGGTGTCCTTGAGCACCAGCCGCTTGACC
ACGTTCAACAACTTGAGCTCGTTGAACGTCAAGTCAACGATCCCGTTGAGGGTCCCGCTCCCGGG
CTGCGCGGTGATCAGCCGGATGATCCGCGCCACCATGTACCGGTTCTCCACCATCTTCTTCTTGG
TCTGGAGCATGTTGGGCTGGCCAAGGGTGCCGGCACCCGCACGAC
Right flanking sequence: Indices 5910 -- 6409
CACGTTCGCACCGCCTTGCGCCCCTCCCGCCCCCACCTGCCCCGTGCGCGCGCCAAAGAAGGGGT
CGATGGGCAACCCCTCCACCAACGCCTCCACCCGGTAGTCGCGGAAGAACACCGGGTCGTCCGCG
CGCCAGTGGGTGGCCACCACGAGCTGGCGGATGGACGCGGGCCCGCGGCGGTCGTCCTCGATGAA
CCCGTCGTCGTCCCCGTCGCCGCCCGCGTCGTCGTCGTCGTCGTCGCCGTCGGTGTCGATGTCCT
CGCCGTCACTCCCCTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCGTAGTCGACCCCGGCGAGC
TCCGCGAGCGGGGGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTA
GGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCCACCATCGCCGCCA
CGGTGGCGGTCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGG
Found at i:5905 original size:24 final size:24
Alignment explanation
Indices: 5819--5922 Score: 100
Period size: 24 Copynumber: 4.0 Consensus size: 24
5809 CCCGCACGAC
5819 CACCGGCACCGCCGTTCGCACCGG
1 CACCGGCACCGCCGTTCGCACCGG
* *
5843 TACCCGCACCGCCGTTCGCACCGG
1 CACCGGCACCGCCGTTCGCACCGG
*
5867 CACCCGCACCCGCACCGCCGTTGGCACCGG
1 CA-CCG-----GCACCGCCGTTCGCACCGG
5897 CACCGGCACCGGCCACGTTCGCACCG
1 CACCGGCACC-G-C-CGTTCGCACCG
5923 CCTTGCGCCC
Statistics
Matches: 65, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
24 28 0.43
25 3 0.05
26 1 0.02
27 10 0.15
29 3 0.05
30 20 0.31
ACGTcount: A:0.13, C:0.51, G:0.27, T:0.09
Consensus pattern (24 bp):
CACCGGCACCGCCGTTCGCACCGG
Left flanking sequence: Indices 5319 -- 5818
AACGTCACAAAACCATCAACAAACCAACCATTCAGCAACACACCACCCAAAGCTCCTCCGAAACA
ACACCACTCTCTTAAACCACCCTCCTACATCGTCTCCTACATGTCTCCTTTCTTTTATCGCACTG
TCTATAAATACCGGTACGCTGTGCACTGCGCTGGCTCCTCTCTAACTGGTCGACGCCGCCACCAC
GTCGTCGGGCGACATCGCCTCTATCTTCGCAAGCTCGGCCGCGTACTGCGCGCGCTTCGCCGGGT
CCACGTCCCACGTCTTGGCCACGATCAAGTCCTTGATGGTGTCCTTGAGCACCAGCCGCTTGACC
ACGTTCAACAACTTGAGCTCGTTGAACGTCAAGTCAACGATCCCGTTGAGGGTCCCGCTCCCGGG
CTGCGCGGTGATCAGCCGGATGATCCGCGCCACCATGTACCGGTTCTCCACCATCTTCTTCTTGG
TCTGGAGCATGTTGGGCTGGCCAAGGGTGCCGGCACCCGCACGAC
Right flanking sequence: Indices 5923 -- 6422
CCTTGCGCCCCTCCCGCCCCCACCTGCCCCGTGCGCGCGCCAAAGAAGGGGTCGATGGGCAACCC
CTCCACCAACGCCTCCACCCGGTAGTCGCGGAAGAACACCGGGTCGTCCGCGCGCCAGTGGGTGG
CCACCACGAGCTGGCGGATGGACGCGGGCCCGCGGCGGTCGTCCTCGATGAACCCGTCGTCGTCC
CCGTCGCCGCCCGCGTCGTCGTCGTCGTCGTCGCCGTCGGTGTCGATGTCCTCGCCGTCACTCCC
CTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCGTAGTCGACCCCGGCGAGCTCCGCGAGCGGGG
GCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTAGGGCGGGCGCCGG
TTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCCACCATCGCCGCCACGGTGGCGGTCGA
CGCCTCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGCGGGGGC
Found at i:6155 original size:12 final size:12
Alignment explanation
Indices: 6106--6156 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
6096 CTCGATGAAC
*
6106 CCGTCGTCGTCC
1 CCGTCGTCGTCG
*
6118 CCGTCGCCG-C-
1 CCGTCGTCGTCG
6128 CCG-CGTCGTCG
1 CCGTCGTCGTCG
*
6139 TCGTCGTCGTCG
1 CCGTCGTCGTCG
6151 CCGTCG
1 CCGTCG
6157 GTGTCGATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 4 0.12
10 4 0.12
11 3 0.09
12 21 0.66
ACGTcount: A:0.00, C:0.47, G:0.31, T:0.22
Consensus pattern (12 bp):
CCGTCGTCGTCG
Left flanking sequence: Indices 5606 -- 6105
AGTCCTTGATGGTGTCCTTGAGCACCAGCCGCTTGACCACGTTCAACAACTTGAGCTCGTTGAAC
GTCAAGTCAACGATCCCGTTGAGGGTCCCGCTCCCGGGCTGCGCGGTGATCAGCCGGATGATCCG
CGCCACCATGTACCGGTTCTCCACCATCTTCTTCTTGGTCTGGAGCATGTTGGGCTGGCCAAGGG
TGCCGGCACCCGCACGACCACCGGCACCGCCGTTCGCACCGGTACCCGCACCGCCGTTCGCACCG
GCACCCGCACCCGCACCGCCGTTGGCACCGGCACCGGCACCGGCCACGTTCGCACCGCCTTGCGC
CCCTCCCGCCCCCACCTGCCCCGTGCGCGCGCCAAAGAAGGGGTCGATGGGCAACCCCTCCACCA
ACGCCTCCACCCGGTAGTCGCGGAAGAACACCGGGTCGTCCGCGCGCCAGTGGGTGGCCACCACG
AGCTGGCGGATGGACGCGGGCCCGCGGCGGTCGTCCTCGATGAAC
Right flanking sequence: Indices 6157 -- 6656
GTGTCGATGTCCTCGCCGTCACTCCCCTCCTCGCGCCACTCCAAGTCGGAGTCGTACTCGTAGTC
GACCCCGGCGAGCTCCGCGAGCGGGGGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACC
AGGTGCCGGCGTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCC
ACCATCGCCGCCACGGTGGCGGTCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGC
GGGGGCGGGCGGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCCATCGGGGGCGACGCCGAGGTGC
CGCCGCGGAGCACCTCCTCCACCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGGCGGGGGCCACC
ACCATGTGCAGCAGCTCGAAGAACGGGAGGAAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCCTG
CGGCTGCTTTTGGACGTCGGGCGCCGGCTTCGCGGGCTTGGCGGG
Found at i:6756 original size:21 final size:21
Alignment explanation
Indices: 6743--6789 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
6733 TCCTCCGCCG
6743 CGCGCTTCTTCTCCTCCCACC
1 CGCGCTTCTTCTCCTCCCACC
* *
6764 CGCGCTTCTTTTCCTCCCACT
1 CGCGCTTCTTCTCCTCCCACC
6785 CGCGC
1 CGCGC
6790 CGGCGCTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.04, C:0.53, G:0.13, T:0.30
Consensus pattern (21 bp):
CGCGCTTCTTCTCCTCCCACC
Left flanking sequence: Indices 6243 -- 6742
CGGGGGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACCAGGTGCCGGCGTAGGGCGGGC
GCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCCACCATCGCCGCCACGGTGGCG
GTCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGCGGGGGCGGGCGGGGGCTGTGC
GCGGTGGGCAAAGAACGCCGCCATCGGGGGCGACGCCGAGGTGCCGCCGCGGAGCACCTCCTCCA
CCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGGCGGGGGCCACCACCATGTGCAGCAGCTCGAAG
AACGGGAGGAAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTGGACGTCGGG
CGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTGCGACGCCTCCT
TGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCG
Right flanking sequence: Indices 6790 -- 7289
CGGCGCTCGGCCTTTTCGGCGTCGGCGGCGCGCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGC
GCGCTCCTCCTCCTCGCGCTGCTTCTTGGCCGCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCT
CCTTGCGCTGGCGCTCGCGCTCGCGCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGG
CGGTTGGCCTCGGCCTGGAGCTTGGCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTC
GGGCGGGGCGTCGGGGGAGGCCGCGGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGAGGTGTCGG
GGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGGGCCGGGTGGGCCGGGGGAGGGTGGGAC
GAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGGTATCTTTGCCGGGGGAGCGTCGTCGGG
CTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTGCTCGCGG
Found at i:6766 original size:23 final size:22
Alignment explanation
Indices: 6732--6789 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
6722 CGCGCTTGCG
*
6732 CTCCT-CCGCCGCGCGCTTCTT
1 CTCCTCCCACCGCGCGCTTCTT
6753 CTCCTCCCACC-CGCGCTTCTT
1 CTCCTCCCACCGCGCGCTTCTT
*
6774 TTCCTCCCACTCGCGC
1 CTCCTCCCAC-CGCGC
6790 CGGCGCTCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 24 0.75
22 5 0.16
23 3 0.09
ACGTcount: A:0.03, C:0.55, G:0.14, T:0.28
Consensus pattern (22 bp):
CTCCTCCCACCGCGCGCTTCTT
Left flanking sequence: Indices 6232 -- 6731
AGCTCCGCGAGCGGGGGCGCCCCGGGGGGGCGGTGCTGGTGCGCCGCCAGGCACCAGGTGCCGGC
GTAGGGCGGGCGCCGGTTCTCGTAGAAGCTGAGGAACTTGAGGGGCAACCGCGCCACCATCGCCG
CCACGGTGGCGGTCGACGCCTCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGCGGGGGCGGGC
GGGGGCTGTGCGCGGTGGGCAAAGAACGCCGCCATCGGGGGCGACGCCGAGGTGCCGCCGCGGAG
CACCTCCTCCACCGCGGCGGCGGCGCCGGGGGCCGGGGCCGGGGCGGGGGCCACCACCATGTGCA
GCAGCTCGAAGAACGGGAGGAAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTT
TGGACGTCGGGCGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTG
CGACGCCTCCTTGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCG
Right flanking sequence: Indices 6790 -- 7289
CGGCGCTCGGCCTTTTCGGCGTCGGCGGCGCGCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGC
GCGCTCCTCCTCCTCGCGCTGCTTCTTGGCCGCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCT
CCTTGCGCTGGCGCTCGCGCTCGCGCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGG
CGGTTGGCCTCGGCCTGGAGCTTGGCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTC
GGGCGGGGCGTCGGGGGAGGCCGCGGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGAGGTGTCGG
GGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGGGCCGGGTGGGCCGGGGGAGGGTGGGAC
GAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGGTATCTTTGCCGGGGGAGCGTCGTCGGG
CTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTGCTCGCGG
Found at i:6902 original size:15 final size:14
Alignment explanation
Indices: 6882--6911 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
6872 GCTGCTTCTT
6882 GGCCGCGCGCTCGGC
1 GGCCGCGCGCT-GGC
6897 GGCCGCGCGCTGGC
1 GGCCGCGCGCTGGC
6911 G
1 G
6912 CTCCTCCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.00, C:0.43, G:0.50, T:0.07
Consensus pattern (14 bp):
GGCCGCGCGCTGGC
Left flanking sequence: Indices 6382 -- 6881
TCGTTCATCGCCGCCGCCACCTCCACGGGGTCGGCGGGGGCGGGCGGGGGCTGTGCGCGGTGGGC
AAAGAACGCCGCCATCGGGGGCGACGCCGAGGTGCCGCCGCGGAGCACCTCCTCCACCGCGGCGG
CGGCGCCGGGGGCCGGGGCCGGGGCGGGGGCCACCACCATGTGCAGCAGCTCGAAGAACGGGAGG
AAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTGGACGTCGGGCGCCGGCTT
CGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTGCGACGCCTCCTTGCGGCGGC
GCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCGCGCGCTTCTTCTCCTCCCACCCGCGCTTC
TTTTCCTCCCACTCGCGCCGGCGCTCGGCCTTTTCGGCGTCGGCGGCGCGCTTCTTCTCCTCCTG
GAGGCGCCGGCGCTGGGCGCGCTCCTCCTCCTCGCGCTGCTTCTT
Right flanking sequence: Indices 6912 -- 7411
CTCCTCCTCCTTGCGCTGGCGCTCGCGCTCGCGCTCCTCCTCCTTGCGCCGCTTGGCCTCGGCGC
GCGCCTGGCGGTTGGCCTCGGCCTGGAGCTTGGCGAGCTGTTTCTTGGTGAGTTTCGGGGCGGCG
GCCCCGTCGGGCGGGGCGTCGGGGGAGGCCGCGGGGGAGGCCGCGGTCTCGGGGGTGGTGGAGGA
GGTGTCGGGGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGGGCCGGGTGGGCCGGGGGAG
GGTGGGACGAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGGTATCTTTGCCGGGGGAGCG
TCGTCGGGCTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTGCTCGCGGAGGGTTTTGGTT
GAGCGCGCGACGCGTCTGGTTGGCGCGGGCTCGCAACGGGATGCAGAAGTGAGCACAGTGAATAG
TGCAGGAGCACAGAAGCACAGTAGAAGCACGATAGGAGCACAGTA
Found at i:7076 original size:12 final size:12
Alignment explanation
Indices: 7061--7087 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7051 GGCGGGGCGT
7061 CGGGGGAGGCCG
1 CGGGGGAGGCCG
7073 CGGGGGAGGCCG
1 CGGGGGAGGCCG
7085 CGG
1 CGG
7088 TCTCGGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.67, T:0.00
Consensus pattern (12 bp):
CGGGGGAGGCCG
Left flanking sequence: Indices 6561 -- 7060
CTCGAAGAACGGGAGGAAGAACCGCGAGTAGCCGTCCGCCAGCGCCGCCTGCGGCTGCTTTTGGA
CGTCGGGCGCCGGCTTCGCGGGCTTGGCGGGCTTGGTGAAGAACAGGTGGATCAGCTTCTGCGAC
GCCTCCTTGCGGCGGCGCTCGTCGTCGGCGGCGCGCTTGCGCTCCTCCGCCGCGCGCTTCTTCTC
CTCCCACCCGCGCTTCTTTTCCTCCCACTCGCGCCGGCGCTCGGCCTTTTCGGCGTCGGCGGCGC
GCTTCTTCTCCTCCTGGAGGCGCCGGCGCTGGGCGCGCTCCTCCTCCTCGCGCTGCTTCTTGGCC
GCGCGCTCGGCGGCCGCGCGCTGGCGCTCCTCCTCCTTGCGCTGGCGCTCGCGCTCGCGCTCCTC
CTCCTTGCGCCGCTTGGCCTCGGCGCGCGCCTGGCGGTTGGCCTCGGCCTGGAGCTTGGCGAGCT
GTTTCTTGGTGAGTTTCGGGGCGGCGGCCCCGTCGGGCGGGGCGT
Right flanking sequence: Indices 7088 -- 7587
TCTCGGGGGTGGTGGAGGAGGTGTCGGGGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGACGGG
GCCGGGTGGGCCGGGGGAGGGTGGGACGAAGGCACTGGATGGACCAGTGGGTCGTCGCACCGGGG
TATCTTTGCCGGGGGAGCGTCGTCGGGCTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAGGTG
CTCGCGGAGGGTTTTGGTTGAGCGCGCGACGCGTCTGGTTGGCGCGGGCTCGCAACGGGATGCAG
AAGTGAGCACAGTGAATAGTGCAGGAGCACAGAAGCACAGTAGAAGCACGATAGGAGCACAGTAA
CAACACAGCCCAAGCGAGTGGCAGCACCTTAGCAGCACGGTGGCAGCACTATAGTAGCAAGATGA
TAAGACAATACCGCTAAGACACAGACGAATTATCAAACTACGGGGTACACACAAAAACCTACGTT
AAATCATTTTTTAAGAAATTCTGACAATTTTCATTATTTATTTTC
Found at i:7598 original size:8 final size:8
Alignment explanation
Indices: 7585--7699 Score: 125
Period size: 8 Copynumber: 14.9 Consensus size: 8
7575 ATTATTTATT
7585 TTCAATTA
1 TTCAATTA
7593 TTCAA-TA
1 TTCAATTA
*
7600 TT-TATTA
1 TTCAATTA
7607 TTCAATTA
1 TTCAATTA
7615 TTCAATTA
1 TTCAATTA
7623 TTCAATTA
1 TTCAATTA
7631 TTCAATTA
1 TTCAATTA
*
7639 TTCAAATA
1 TTCAATTA
7647 TTCAATTA
1 TTCAATTA
*
7655 TACAA-TA
1 TTCAATTA
*
7662 CTCAATTCA
1 TTCAATT-A
7671 TTCAA-TA
1 TTCAATTA
*
7678 TTTAATTCA
1 TTCAATT-A
7687 TTC-A-TA
1 TTCAATTA
7693 TTCAATT
1 TTCAATT
7700 TATTAATACT
Statistics
Matches: 89, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
6 5 0.06
7 20 0.22
8 56 0.63
9 8 0.09
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (8 bp):
TTCAATTA
Left flanking sequence: Indices 7085 -- 7584
CGGTCTCGGGGGTGGTGGAGGAGGTGTCGGGGGTGTTGGCCTCCTGGGACGAGGGCACCAGGGAC
GGGGCCGGGTGGGCCGGGGGAGGGTGGGACGAAGGCACTGGATGGACCAGTGGGTCGTCGCACCG
GGGTATCTTTGCCGGGGGAGCGTCGTCGGGCTCCGCCAGTCGTTTCTCAGGCATCACTGGTGGAG
GTGCTCGCGGAGGGTTTTGGTTGAGCGCGCGACGCGTCTGGTTGGCGCGGGCTCGCAACGGGATG
CAGAAGTGAGCACAGTGAATAGTGCAGGAGCACAGAAGCACAGTAGAAGCACGATAGGAGCACAG
TAACAACACAGCCCAAGCGAGTGGCAGCACCTTAGCAGCACGGTGGCAGCACTATAGTAGCAAGA
TGATAAGACAATACCGCTAAGACACAGACGAATTATCAAACTACGGGGTACACACAAAAACCTAC
GTTAAATCATTTTTTAAGAAATTCTGACAATTTTCATTATTTATT
Right flanking sequence: Indices 7700 -- 8199
TATTAATACTCTTCATTCAATCCGCCTCTCTTCAGTCAAGCGCCAACCGGTAGGCGTCGGAGTTG
GCGGCGAGCTCGGCCACCCACCCCACAAGCATATCTCTCATCGCATGGACGTCCCGCTTGGTGAT
CGAGCTCGAGTCCACGCGGGCGTAGAGCGCCCGGAACCGGTCGATCTCGGCCGGCGTAAGCACGG
GGGCCATGCTGGAGAACACCAGCGACGCCGTGAGCTTGAACAGGTCGTGGCGGAGCGCCCAGTGG
TAGCAGATCGCCTCGGGGTCCACAGGGCCCTCGAGCTCGTTGTACCTGGCGTAGTGGGTCAACTG
GCGGCCCAACTCGGGGGACAAGAAGGGGCAGTCGTGGGTTTGGGAGGGCGTTTGGGGCTCGGAAA
TAGCTGTAGCGGGTTGGTGGGCCCACAGAGAGCCAGAGCTTGTGGCCACTTGGTAATTGGCCCCT
TGGCTGGACCGGGAGCCTCTGACCCCTTGGCCGGTTCCTCGAGAC
Found at i:8654 original size:9 final size:9
Alignment explanation
Indices: 8640--8702 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
8630 AGGGAGTGGG
*
8640 GGTAGTAAT
1 GGTAGTAGT
8649 GGTAGTAGT
1 GGTAGTAGT
*
8658 AGTAGTAGT
1 GGTAGTAGT
* *
8667 AGTAGTGGT
1 GGTAGTAGT
8676 GGTAGTGATAGT
1 GGTA--G-TAGT
*
8688 GGTAGTATT
1 GGTAGTAGT
8697 GGTAGT
1 GGTAGT
8703 GGAGGGAGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
9 36 0.80
10 1 0.02
11 1 0.02
12 7 0.16
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (9 bp):
GGTAGTAGT
Left flanking sequence: Indices 8140 -- 8639
TGGTAATTGGCCCCTTGGCTGGACCGGGAGCCTCTGACCCCTTGGCCGGTTCCTCGAGACAGCGA
GCTCGAAGCGCTTCTCTGGTAGCGGAGGGTGTCCCGGCGCACCCGGGCGGTGTACTCAGCGATGG
CCTCTGGTGATTCTCGCAGCTCGGGCGGCAACAGCTGCCACACCGTCTGCCGGAGCTCGAGGCGG
TCGCGGACGGCCAAGAGCTCGTGGTTCTCGTGCTGGAGGGCGTGGTCGCTGGCGCGGAGCTCGGC
CAACTGGCGGCGGTGGTCGTCCGTCTGGCGTCTGCTGGCGTCTCGGGCGGCCTCCACCACCGCTA
AGAGCACCTGCTGGTTGGGGAGGACGACGTTGGTTTCCTCGCCGAGGAGGAGGGCAAAGAGCTCG
CTGAGCTGGTCCTGGAGCCGGGTGACTTGGTCCGGGGTGAGACAGAGGTCGGACGGAGCAGCGAG
AGGGTCTGCAAAGTTGACCTGAGGCATGGTAGTCGAGGGAGTGGG
Right flanking sequence: Indices 8703 -- 9202
GGAGGGAGTGGTGGTGGTAGTAGTGGTTTTGGTGGTAGTATTAGTAATAGTAGAGGTAGTGGTTG
TGTTGGTTGTGTACTTGTGGTTTTACATGACGGTCTACGGTGGTCTTTGTGGTTAACAGGAAGAG
CGTGGAAGGAAGAGAATAAGGTAAGGGAGAAGCAGGAAGAGAGAAGCAGGGAAGAGAAAAGCAGA
GGAGAAAACAGTATTACGAACAGATCAATCCACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAG
GACTGGGGTGGGTAGGCTATTTGTACGCATAGTAATTACAACAACCAAGTATCCTCCAGAAGTAC
ACACTTCGAACCTTTAGTGTAGCCCAGAAACGTAACCTCCACCACAACACTGCTCCAACCCTCCC
AACTCTTCCAACTCTCACTAAGCCATCACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTTC
CATGCCACCACCCACATTAGCCATGTCTCCTGCTAAACCACCATC
Found at i:8727 original size:15 final size:15
Alignment explanation
Indices: 8653--8729 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
8643 AGTAATGGTA
* *
8653 GTAGTAGTAGTAGTA
1 GTAGTGGTAGTAGTG
*
8668 GTAGTGGTGGTAGTG
1 GTAGTGGTAGTAGTG
* *
8683 ATAGTGGTAGTATTG
1 GTAGTGGTAGTAGTG
*
8698 GTAGTGG-AGGGAGTG
1 GTAGTGGTA-GTAGTG
*
8713 GTGGTGGTAGTAGTG
1 GTAGTGGTAGTAGTG
8728 GT
1 GT
8730 TTTGGTGGTA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
14 1 0.02
15 47 0.96
16 1 0.02
ACGTcount: A:0.21, C:0.00, G:0.47, T:0.32
Consensus pattern (15 bp):
GTAGTGGTAGTAGTG
Left flanking sequence: Indices 8153 -- 8652
CTTGGCTGGACCGGGAGCCTCTGACCCCTTGGCCGGTTCCTCGAGACAGCGAGCTCGAAGCGCTT
CTCTGGTAGCGGAGGGTGTCCCGGCGCACCCGGGCGGTGTACTCAGCGATGGCCTCTGGTGATTC
TCGCAGCTCGGGCGGCAACAGCTGCCACACCGTCTGCCGGAGCTCGAGGCGGTCGCGGACGGCCA
AGAGCTCGTGGTTCTCGTGCTGGAGGGCGTGGTCGCTGGCGCGGAGCTCGGCCAACTGGCGGCGG
TGGTCGTCCGTCTGGCGTCTGCTGGCGTCTCGGGCGGCCTCCACCACCGCTAAGAGCACCTGCTG
GTTGGGGAGGACGACGTTGGTTTCCTCGCCGAGGAGGAGGGCAAAGAGCTCGCTGAGCTGGTCCT
GGAGCCGGGTGACTTGGTCCGGGGTGAGACAGAGGTCGGACGGAGCAGCGAGAGGGTCTGCAAAG
TTGACCTGAGGCATGGTAGTCGAGGGAGTGGGGGTAGTAATGGTA
Right flanking sequence: Indices 8730 -- 9229
TTTGGTGGTAGTATTAGTAATAGTAGAGGTAGTGGTTGTGTTGGTTGTGTACTTGTGGTTTTACA
TGACGGTCTACGGTGGTCTTTGTGGTTAACAGGAAGAGCGTGGAAGGAAGAGAATAAGGTAAGGG
AGAAGCAGGAAGAGAGAAGCAGGGAAGAGAAAAGCAGAGGAGAAAACAGTATTACGAACAGATCA
ATCCACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGGGTGGGTAGGCTATTTGTACG
CATAGTAATTACAACAACCAAGTATCCTCCAGAAGTACACACTTCGAACCTTTAGTGTAGCCCAG
AAACGTAACCTCCACCACAACACTGCTCCAACCCTCCCAACTCTTCCAACTCTCACTAAGCCATC
ACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTTCCATGCCACCACCCACATTAGCCATGTC
TCCTGCTAAACCACCATCAATTCGCTAAAAAACCCGTCTACACCC
Found at i:8887 original size:15 final size:15
Alignment explanation
Indices: 8859--8896 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
8849 TAAGGTAAGG
8859 GAGAAGCA-GGAAGA
1 GAGAAGCAGGGAAGA
8873 GAGAAGCAGGGAAGA
1 GAGAAGCAGGGAAGA
*
8888 GAAAAGCAG
1 GAGAAGCAG
8897 AGGAGAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (15 bp):
GAGAAGCAGGGAAGA
Left flanking sequence: Indices 8359 -- 8858
TTCTCGTGCTGGAGGGCGTGGTCGCTGGCGCGGAGCTCGGCCAACTGGCGGCGGTGGTCGTCCGT
CTGGCGTCTGCTGGCGTCTCGGGCGGCCTCCACCACCGCTAAGAGCACCTGCTGGTTGGGGAGGA
CGACGTTGGTTTCCTCGCCGAGGAGGAGGGCAAAGAGCTCGCTGAGCTGGTCCTGGAGCCGGGTG
ACTTGGTCCGGGGTGAGACAGAGGTCGGACGGAGCAGCGAGAGGGTCTGCAAAGTTGACCTGAGG
CATGGTAGTCGAGGGAGTGGGGGTAGTAATGGTAGTAGTAGTAGTAGTAGTAGTGGTGGTAGTGA
TAGTGGTAGTATTGGTAGTGGAGGGAGTGGTGGTGGTAGTAGTGGTTTTGGTGGTAGTATTAGTA
ATAGTAGAGGTAGTGGTTGTGTTGGTTGTGTACTTGTGGTTTTACATGACGGTCTACGGTGGTCT
TTGTGGTTAACAGGAAGAGCGTGGAAGGAAGAGAATAAGGTAAGG
Right flanking sequence: Indices 8897 -- 9396
AGGAGAAAACAGTATTACGAACAGATCAATCCACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTA
GGACTGGGGTGGGTAGGCTATTTGTACGCATAGTAATTACAACAACCAAGTATCCTCCAGAAGTA
CACACTTCGAACCTTTAGTGTAGCCCAGAAACGTAACCTCCACCACAACACTGCTCCAACCCTCC
CAACTCTTCCAACTCTCACTAAGCCATCACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTT
CCATGCCACCACCCACATTAGCCATGTCTCCTGCTAAACCACCATCAATTCGCTAAAAAACCCGT
CTACACCCACACACCCATTCTACTACCCCACACACCACCCCTTTTGTCTTCCCACCCTCTCGCTC
TACGCTTGTGCGAACACACCTACGCCTACCCAACCAGACCACGCCTAGAACCGTAACAACCCTAT
ATAACCTCTCACCGAGTAAAACCCACGTAACACCCACGTATACCC
Found at i:9444 original size:11 final size:13
Alignment explanation
Indices: 9396--9456 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
9386 CACGTATACC
* *
9396 CACCCACAGACCA
1 CACCCACACACCT
* *
9409 CA-CCACACTCCC
1 CACCCACACACCT
9421 CACCCACACCACAC-
1 CACCCACA-CAC-CT
9435 CACCCACACACCT
1 CACCCACACACCT
9448 CACCCACAC
1 CACCCACAC
9457 CCCGTTTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 10 0.25
13 19 0.47
14 10 0.25
15 1 0.03
ACGTcount: A:0.33, C:0.62, G:0.02, T:0.03
Consensus pattern (13 bp):
CACCCACACACCT
Left flanking sequence: Indices 8896 -- 9395
GAGGAGAAAACAGTATTACGAACAGATCAATCCACTGAAAAGGTCCTTCTGTGAGTTTATTCGGT
AGGACTGGGGTGGGTAGGCTATTTGTACGCATAGTAATTACAACAACCAAGTATCCTCCAGAAGT
ACACACTTCGAACCTTTAGTGTAGCCCAGAAACGTAACCTCCACCACAACACTGCTCCAACCCTC
CCAACTCTTCCAACTCTCACTAAGCCATCACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGT
TCCATGCCACCACCCACATTAGCCATGTCTCCTGCTAAACCACCATCAATTCGCTAAAAAACCCG
TCTACACCCACACACCCATTCTACTACCCCACACACCACCCCTTTTGTCTTCCCACCCTCTCGCT
CTACGCTTGTGCGAACACACCTACGCCTACCCAACCAGACCACGCCTAGAACCGTAACAACCCTA
TATAACCTCTCACCGAGTAAAACCCACGTAACACCCACGTATACC
Right flanking sequence: Indices 9457 -- 9956
CCCGTTTATGCCCGCTCCCGCCCGCCAAACCACCTCTTTTCACCCGTCTTTTCACCCGTGCCCGA
CCCGCGTTTTGACCACTTTTGACCAGCTTTGACCACTTTTGACCACTTTTGACCACCAATGAAGC
TTCTCTCCGTGGTGGCCCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTT
GAGTTCCTCGAGGCGGTGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTT
TGTCGAGGACAACGCCCCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGG
CGATCCAGCAGGACTGGGACAACCACGTGCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTAC
AACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAA
CTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTA
Found at i:9446 original size:16 final size:16
Alignment explanation
Indices: 9405--9457 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 16
9395 CCACCCACAG
9405 ACCACACCACACTCCCC
1 ACCACACCACAC-CCCC
9422 ACCCACACCACACCACCC
1 A-CCACACCACACC-CCC
* *
9440 A-CACACCTCACCCAC
1 ACCACACCACACCCCC
9455 ACC
1 ACC
9458 CCGTTTATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 3 0.10
16 11 0.35
17 2 0.06
18 15 0.48
ACGTcount: A:0.32, C:0.64, G:0.00, T:0.04
Consensus pattern (16 bp):
ACCACACCACACCCCC
Left flanking sequence: Indices 8905 -- 9404
ACAGTATTACGAACAGATCAATCCACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGG
GTGGGTAGGCTATTTGTACGCATAGTAATTACAACAACCAAGTATCCTCCAGAAGTACACACTTC
GAACCTTTAGTGTAGCCCAGAAACGTAACCTCCACCACAACACTGCTCCAACCCTCCCAACTCTT
CCAACTCTCACTAAGCCATCACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTTCCATGCCA
CCACCCACATTAGCCATGTCTCCTGCTAAACCACCATCAATTCGCTAAAAAACCCGTCTACACCC
ACACACCCATTCTACTACCCCACACACCACCCCTTTTGTCTTCCCACCCTCTCGCTCTACGCTTG
TGCGAACACACCTACGCCTACCCAACCAGACCACGCCTAGAACCGTAACAACCCTATATAACCTC
TCACCGAGTAAAACCCACGTAACACCCACGTATACCCACCCACAG
Right flanking sequence: Indices 9458 -- 9957
CCGTTTATGCCCGCTCCCGCCCGCCAAACCACCTCTTTTCACCCGTCTTTTCACCCGTGCCCGAC
CCGCGTTTTGACCACTTTTGACCAGCTTTGACCACTTTTGACCACTTTTGACCACCAATGAAGCT
TCTCTCCGTGGTGGCCCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTTG
AGTTCCTCGAGGCGGTGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTT
GTCGAGGACAACGCCCCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGC
GATCCAGCAGGACTGGGACAACCACGTGCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACA
ACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAAC
TGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTAC
Found at i:9451 original size:27 final size:28
Alignment explanation
Indices: 9405--9457 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
9395 CCACCCACAG
*
9405 ACCACACCACACTCCCCACCCACACCAC
1 ACCACACCACACACCCCACCCACACCAC
*
9433 ACCAC-CCACACACCTCACCCACACC
1 ACCACACCACACACCCCACCCACACC
9458 CCGTTTATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.32, C:0.64, G:0.00, T:0.04
Consensus pattern (28 bp):
ACCACACCACACACCCCACCCACACCAC
Left flanking sequence: Indices 8905 -- 9404
ACAGTATTACGAACAGATCAATCCACTGAAAAGGTCCTTCTGTGAGTTTATTCGGTAGGACTGGG
GTGGGTAGGCTATTTGTACGCATAGTAATTACAACAACCAAGTATCCTCCAGAAGTACACACTTC
GAACCTTTAGTGTAGCCCAGAAACGTAACCTCCACCACAACACTGCTCCAACCCTCCCAACTCTT
CCAACTCTCACTAAGCCATCACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTTCCATGCCA
CCACCCACATTAGCCATGTCTCCTGCTAAACCACCATCAATTCGCTAAAAAACCCGTCTACACCC
ACACACCCATTCTACTACCCCACACACCACCCCTTTTGTCTTCCCACCCTCTCGCTCTACGCTTG
TGCGAACACACCTACGCCTACCCAACCAGACCACGCCTAGAACCGTAACAACCCTATATAACCTC
TCACCGAGTAAAACCCACGTAACACCCACGTATACCCACCCACAG
Right flanking sequence: Indices 9458 -- 9957
CCGTTTATGCCCGCTCCCGCCCGCCAAACCACCTCTTTTCACCCGTCTTTTCACCCGTGCCCGAC
CCGCGTTTTGACCACTTTTGACCAGCTTTGACCACTTTTGACCACTTTTGACCACCAATGAAGCT
TCTCTCCGTGGTGGCCCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCCGCGCTTG
AGTTCCTCGAGGCGGTGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGAGCTCTTT
GTCGAGGACAACGCCCCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCAAGGAGGC
GATCCAGCAGGACTGGGACAACCACGTGCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACA
ACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAAC
TGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTAC
Found at i:9508 original size:12 final size:12
Alignment explanation
Indices: 9491--9515 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9481 CCAAACCACC
9491 TCTTTTCACCCG
1 TCTTTTCACCCG
9503 TCTTTTCACCCG
1 TCTTTTCACCCG
9515 T
1 T
9516 GCCCGACCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.08, T:0.44
Consensus pattern (12 bp):
TCTTTTCACCCG
Left flanking sequence: Indices 8991 -- 9490
ATAGTAATTACAACAACCAAGTATCCTCCAGAAGTACACACTTCGAACCTTTAGTGTAGCCCAGA
AACGTAACCTCCACCACAACACTGCTCCAACCCTCCCAACTCTTCCAACTCTCACTAAGCCATCA
CCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTTCCATGCCACCACCCACATTAGCCATGTCT
CCTGCTAAACCACCATCAATTCGCTAAAAAACCCGTCTACACCCACACACCCATTCTACTACCCC
ACACACCACCCCTTTTGTCTTCCCACCCTCTCGCTCTACGCTTGTGCGAACACACCTACGCCTAC
CCAACCAGACCACGCCTAGAACCGTAACAACCCTATATAACCTCTCACCGAGTAAAACCCACGTA
ACACCCACGTATACCCACCCACAGACCACACCACACTCCCCACCCACACCACACCACCCACACAC
CTCACCCACACCCCGTTTATGCCCGCTCCCGCCCGCCAAACCACC
Right flanking sequence: Indices 9516 -- 10015
GCCCGACCCGCGTTTTGACCACTTTTGACCAGCTTTGACCACTTTTGACCACTTTTGACCACCAA
TGAAGCTTCTCTCCGTGGTGGCCCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTGCCC
GCGCTTGAGTTCCTCGAGGCGGTGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCACGA
GCTCTTTGTCGAGGACAACGCCCCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGCTCA
AGGAGGCGATCCAGCAGGACTGGGACAACCACGTGCACGTCCCAGCGCTCGAGGCGATGCAGGCA
TCGTACAACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCC
CACCAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCG
ACGCCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCATTGGCG
Found at i:9543 original size:10 final size:10
Alignment explanation
Indices: 9528--9577 Score: 84
Period size: 10 Copynumber: 5.0 Consensus size: 10
9518 CCGACCCGCG
9528 TTTTGACCAC
1 TTTTGACCAC
9538 TTTTGACCAGC
1 TTTTGACCA-C
9549 -TTTGACCAC
1 TTTTGACCAC
9558 TTTTGACCAC
1 TTTTGACCAC
9568 TTTTGACCAC
1 TTTTGACCAC
9578 CAATGAAGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
9 1 0.03
10 36 0.95
11 1 0.03
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (10 bp):
TTTTGACCAC
Left flanking sequence: Indices 9028 -- 9527
ACACTTCGAACCTTTAGTGTAGCCCAGAAACGTAACCTCCACCACAACACTGCTCCAACCCTCCC
AACTCTTCCAACTCTCACTAAGCCATCACCACATCGCTTCCCTCTCCTTCACTTAGCCTTCGTTC
CATGCCACCACCCACATTAGCCATGTCTCCTGCTAAACCACCATCAATTCGCTAAAAAACCCGTC
TACACCCACACACCCATTCTACTACCCCACACACCACCCCTTTTGTCTTCCCACCCTCTCGCTCT
ACGCTTGTGCGAACACACCTACGCCTACCCAACCAGACCACGCCTAGAACCGTAACAACCCTATA
TAACCTCTCACCGAGTAAAACCCACGTAACACCCACGTATACCCACCCACAGACCACACCACACT
CCCCACCCACACCACACCACCCACACACCTCACCCACACCCCGTTTATGCCCGCTCCCGCCCGCC
AAACCACCTCTTTTCACCCGTCTTTTCACCCGTGCCCGACCCGCG
Right flanking sequence: Indices 9578 -- 10077
CAATGAAGCTTCTCTCCGTGGTGGCCCTCGCGGGCCTTGTCTCGGCCCTGACCAACTTCACCGTG
CCCGCGCTTGAGTTCCTCGAGGCGGTGGCCGCACACAACGAGCTGGCGTACGCTCCCGCGGTCCA
CGAGCTCTTTGTCGAGGACAACGCCCCCGAGGACGTGCTTGCCGAGCTCGACATCGCCCCGACGC
TCAAGGAGGCGATCCAGCAGGACTGGGACAACCACGTGCACGTCCCAGCGCTCGAGGCGATGCAG
GCATCGTACAACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGA
CCCCACCAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGT
CCGACGCCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATG
ATTTTCTACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGGATG
Found at i:10261 original size:8 final size:8
Alignment explanation
Indices: 10250--10274 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10240 TATTACGTTA
10250 ATACGAAC
1 ATACGAAC
10258 ATACGAAC
1 ATACGAAC
10266 ATACGAAC
1 ATACGAAC
10274 A
1 A
10275 CTGGTAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.12, T:0.12
Consensus pattern (8 bp):
ATACGAAC
Left flanking sequence: Indices 9750 -- 10249
CGAGCTCGACATCGCCCCGACGCTCAAGGAGGCGATCCAGCAGGACTGGGACAACCACGTGCACG
TCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGAGTGGAACGAC
GACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTT
CGACGACTTGTACGCGATCAAGTCCGACGCCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCA
TTGGCGACGAGGGCCCGGTGATGATTTTCTACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGG
ATGAACGTGCTCTGGCACAACGCCGACGGGGGCAAGCACCGGTTTGTGTGGCGGTACATTGTAGC
GTAGGGGAGTGGGGACTGGTGGGACTGGCCGTGTGGGACGATGACACTGCCAACTAGTAGTGCCT
CACATAGTCGTAAGGTCAAGGTGACTTTCATTACTTATTACGTTA
Right flanking sequence: Indices 10275 -- 10774
CTGGTAGAGTAGGTTGGTGGGTCTGGTGGTGGTGGACTTGATGATTGTGGACTTGGTGGTGGTGG
GCCTGGTGGTGGACCAAGTGGTGGACTAGTGGTGGACCAAGTGGTGGTGGCCTGGTGGTTGACCT
GGTGGACTAGTGGTGGACTAGGTGGTGATAGCTAATAGGTGAATTCCTTGGAATGGCCCATCCAC
ACCACTGGACTCGCCTTGTTTACACAACCCAGGGTTGTCTTTTCGCGCTTGATCCTCGTCTAACG
ACTCGTATGTCAATCCACCACCAGTGTTGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGA
TAGGCCCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTACGCACCTAACCATCTACG
GTAGCCATCTAATGCTGAGGTAGTCACAGGAATGTAAACCCGACCGGATCACGCAACCTACATTC
TATTGGTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCC
Found at i:10339 original size:15 final size:15
Alignment explanation
Indices: 10298--10351 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
10288 TTGGTGGGTC
10298 TGGTGGTGGTGGACT
1 TGGTGGTGGTGGACT
* * *
10313 TGATGATTGTGGACT
1 TGGTGGTGGTGGACT
* *
10328 TGGTGGTGGTGGGCC
1 TGGTGGTGGTGGACT
10343 TGGTGGTGG
1 TGGTGGTGG
10352 ACCAAGTGGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.07, C:0.07, G:0.52, T:0.33
Consensus pattern (15 bp):
TGGTGGTGGTGGACT
Left flanking sequence: Indices 9798 -- 10297
GGACAACCACGTGCACGTCCCAGCGCTCGAGGCGATGCAGGCATCGTACAACGAGCTCATCGCCA
CCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACCAACTGGGTGTGGTACAAC
GGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGCCCACCTGGAGCCCGTGGA
GCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATGATTTTCTACGGCGACTACAAGACCG
AGGAGTTTGAGCAGTGGATGAACGTGCTCTGGCACAACGCCGACGGGGGCAAGCACCGGTTTGTG
TGGCGGTACATTGTAGCGTAGGGGAGTGGGGACTGGTGGGACTGGCCGTGTGGGACGATGACACT
GCCAACTAGTAGTGCCTCACATAGTCGTAAGGTCAAGGTGACTTTCATTACTTATTACGTTAATA
CGAACATACGAACATACGAACACTGGTAGAGTAGGTTGGTGGGTC
Right flanking sequence: Indices 10352 -- 10851
ACCAAGTGGTGGACTAGTGGTGGACCAAGTGGTGGTGGCCTGGTGGTTGACCTGGTGGACTAGTG
GTGGACTAGGTGGTGATAGCTAATAGGTGAATTCCTTGGAATGGCCCATCCACACCACTGGACTC
GCCTTGTTTACACAACCCAGGGTTGTCTTTTCGCGCTTGATCCTCGTCTAACGACTCGTATGTCA
ATCCACCACCAGTGTTGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGATAGGCCCAATGG
GGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTACGCACCTAACCATCTACGGTAGCCATCTAA
TGCTGAGGTAGTCACAGGAATGTAAACCCGACCGGATCACGCAACCTACATTCTATTGGTCTACT
ATAGAATAGAGTCTCCCGACTATGGGGAGATCCATCTATTCTTTAACCACACCCCTCGATCTGAG
TAAGTAATCTACCATGGCTGAAAACGACAAGAAATCTCCCAGCGG
Found at i:10346 original size:12 final size:12
Alignment explanation
Indices: 10331--10409 Score: 72
Period size: 12 Copynumber: 6.5 Consensus size: 12
10321 GTGGACTTGG
*
10331 TGGTGGTGGGCC
1 TGGTGGTGGACC
10343 TGGTGGTGGACC
1 TGGTGGTGGACC
**
10355 AAGTGGTGGA-C
1 TGGTGGTGGACC
*
10366 TAGTGGTGGACC
1 TGGTGGTGGACC
10378 AAGTGGTGGTGG-CC
1 ---TGGTGGTGGACC
*
10392 TGGTGGTTGACC
1 TGGTGGTGGACC
10404 TGGTGG
1 TGGTGG
10410 ACTAGTGGTG
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
11 18 0.32
12 28 0.50
14 2 0.04
15 8 0.14
ACGTcount: A:0.11, C:0.14, G:0.49, T:0.25
Consensus pattern (12 bp):
TGGTGGTGGACC
Left flanking sequence: Indices 9831 -- 10330
GATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACC
CCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCG
ATCAAGTCCGACGCCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCC
GGTGATGATTTTCTACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGGATGAACGTGCTCTGGC
ACAACGCCGACGGGGGCAAGCACCGGTTTGTGTGGCGGTACATTGTAGCGTAGGGGAGTGGGGAC
TGGTGGGACTGGCCGTGTGGGACGATGACACTGCCAACTAGTAGTGCCTCACATAGTCGTAAGGT
CAAGGTGACTTTCATTACTTATTACGTTAATACGAACATACGAACATACGAACACTGGTAGAGTA
GGTTGGTGGGTCTGGTGGTGGTGGACTTGATGATTGTGGACTTGG
Right flanking sequence: Indices 10410 -- 10909
ACTAGTGGTGGACTAGGTGGTGATAGCTAATAGGTGAATTCCTTGGAATGGCCCATCCACACCAC
TGGACTCGCCTTGTTTACACAACCCAGGGTTGTCTTTTCGCGCTTGATCCTCGTCTAACGACTCG
TATGTCAATCCACCACCAGTGTTGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGATAGGC
CCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTACGCACCTAACCATCTACGGTAGC
CATCTAATGCTGAGGTAGTCACAGGAATGTAAACCCGACCGGATCACGCAACCTACATTCTATTG
GTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCCATCTATTCTTTAACCACACCCCTCG
ATCTGAGTAAGTAATCTACCATGGCTGAAAACGACAAGAAATCTCCCAGCGGTACCTTCGGTCCC
TTGGCTTCTGACCCCGAGGTCGGGTCTCAACATGGTGAGGCGAAC
Found at i:10407 original size:23 final size:23
Alignment explanation
Indices: 10331--10409 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
10321 GTGGACTTGG
10331 TGGTGGTGGGCCTGGTGGTGGACC
1 TGGTGGT-GGCCTGGTGGTGGACC
** * *
10355 AAGTGGTGGACTAGTGGTGGACC
1 TGGTGGTGGCCTGGTGGTGGACC
*
10378 AAGTGGTGGTGGCCTGGTGGTTGACC
1 ---TGGTGGTGGCCTGGTGGTGGACC
10404 TGGTGG
1 TGGTGG
10410 ACTAGTGGTG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
23 20 0.47
24 5 0.12
26 18 0.42
ACGTcount: A:0.11, C:0.14, G:0.49, T:0.25
Consensus pattern (23 bp):
TGGTGGTGGCCTGGTGGTGGACC
Left flanking sequence: Indices 9831 -- 10330
GATGCAGGCATCGTACAACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACC
CCATCGACCCCACCAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCG
ATCAAGTCCGACGCCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCC
GGTGATGATTTTCTACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGGATGAACGTGCTCTGGC
ACAACGCCGACGGGGGCAAGCACCGGTTTGTGTGGCGGTACATTGTAGCGTAGGGGAGTGGGGAC
TGGTGGGACTGGCCGTGTGGGACGATGACACTGCCAACTAGTAGTGCCTCACATAGTCGTAAGGT
CAAGGTGACTTTCATTACTTATTACGTTAATACGAACATACGAACATACGAACACTGGTAGAGTA
GGTTGGTGGGTCTGGTGGTGGTGGACTTGATGATTGTGGACTTGG
Right flanking sequence: Indices 10410 -- 10909
ACTAGTGGTGGACTAGGTGGTGATAGCTAATAGGTGAATTCCTTGGAATGGCCCATCCACACCAC
TGGACTCGCCTTGTTTACACAACCCAGGGTTGTCTTTTCGCGCTTGATCCTCGTCTAACGACTCG
TATGTCAATCCACCACCAGTGTTGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGATAGGC
CCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTACGCACCTAACCATCTACGGTAGC
CATCTAATGCTGAGGTAGTCACAGGAATGTAAACCCGACCGGATCACGCAACCTACATTCTATTG
GTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCCATCTATTCTTTAACCACACCCCTCG
ATCTGAGTAAGTAATCTACCATGGCTGAAAACGACAAGAAATCTCCCAGCGGTACCTTCGGTCCC
TTGGCTTCTGACCCCGAGGTCGGGTCTCAACATGGTGAGGCGAAC
Found at i:10430 original size:23 final size:22
Alignment explanation
Indices: 10345--10431 Score: 61
Period size: 20 Copynumber: 3.8 Consensus size: 22
10335 GGTGGGCCTG
*
10345 GTGGTGGACCAAGTGGTGGACTA
1 GTGGTGGA-CAGGTGGTGGACTA
* *
10368 GTGGTGGACCAAGTGGTGGTGGCCTG
1 GTGGTGGA-C-A--GGTGGTGGACTA
* *
10394 GTGGTTGAC--CTGGTGGACTA
1 GTGGTGGACAGGTGGTGGACTA
10414 GTGGTGGACTAGGTGGTG
1 GTGGTGGAC-AGGTGGTG
10432 ATAGCTAATA
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
20 16 0.33
23 15 0.31
24 1 0.02
25 1 0.02
26 16 0.33
ACGTcount: A:0.15, C:0.13, G:0.47, T:0.25
Consensus pattern (22 bp):
GTGGTGGACAGGTGGTGGACTA
Left flanking sequence: Indices 9845 -- 10344
ACAACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCACC
AACTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACGC
CCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATGATTTTCT
ACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGGATGAACGTGCTCTGGCACAACGCCGACGGG
GGCAAGCACCGGTTTGTGTGGCGGTACATTGTAGCGTAGGGGAGTGGGGACTGGTGGGACTGGCC
GTGTGGGACGATGACACTGCCAACTAGTAGTGCCTCACATAGTCGTAAGGTCAAGGTGACTTTCA
TTACTTATTACGTTAATACGAACATACGAACATACGAACACTGGTAGAGTAGGTTGGTGGGTCTG
GTGGTGGTGGACTTGATGATTGTGGACTTGGTGGTGGTGGGCCTG
Right flanking sequence: Indices 10432 -- 10931
ATAGCTAATAGGTGAATTCCTTGGAATGGCCCATCCACACCACTGGACTCGCCTTGTTTACACAA
CCCAGGGTTGTCTTTTCGCGCTTGATCCTCGTCTAACGACTCGTATGTCAATCCACCACCAGTGT
TGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGATAGGCCCAATGGGGTCAGGGGTTAGTG
TTGGCTCACATACCTGGTTACGCACCTAACCATCTACGGTAGCCATCTAATGCTGAGGTAGTCAC
AGGAATGTAAACCCGACCGGATCACGCAACCTACATTCTATTGGTCTACTATAGAATAGAGTCTC
CCGACTATGGGGAGATCCATCTATTCTTTAACCACACCCCTCGATCTGAGTAAGTAATCTACCAT
GGCTGAAAACGACAAGAAATCTCCCAGCGGTACCTTCGGTCCCTTGGCTTCTGACCCCGAGGTCG
GGTCTCAACATGGTGAGGCGAACATTTCCTTGAACTCTCTTATGG
Found at i:10431 original size:12 final size:12
Alignment explanation
Indices: 10344--10431 Score: 53
Period size: 11 Copynumber: 7.6 Consensus size: 12
10334 TGGTGGGCCT
*
10344 GGTGGTGGACCA
1 GGTGGTGGACTA
*
10356 AGTGGTGGACTA
1 GGTGGTGGACTA
*
10368 -GTGGTGGACCAA
1 GGTGGTGGA-CTA
*
10380 GTGGTGGTGGCCT-
1 --GGTGGTGGACTA
*
10393 GGTGGTTGAC--
1 GGTGGTGGACTA
*
10403 -CTGGTGGACTA
1 GGTGGTGGACTA
10414 -GTGGTGGACTA
1 GGTGGTGGACTA
10425 GGTGGTG
1 GGTGGTG
10432 ATAGCTAATA
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
9 7 0.12
11 26 0.44
12 18 0.31
14 1 0.02
15 7 0.12
ACGTcount: A:0.15, C:0.12, G:0.48, T:0.25
Consensus pattern (12 bp):
GGTGGTGGACTA
Left flanking sequence: Indices 9844 -- 10343
TACAACGAGCTCATCGCCACCCTCGAGTGGAACGACGACTCCTTCGGCAACCCCATCGACCCCAC
CAACTGGGTGTGGTACAACGGGCGCGTGCACTCGTTCGACGACTTGTACGCGATCAAGTCCGACG
CCCACCTGGAGCCCGTGGAGCCGCTGGACCGGGTCATTGGCGACGAGGGCCCGGTGATGATTTTC
TACGGCGACTACAAGACCGAGGAGTTTGAGCAGTGGATGAACGTGCTCTGGCACAACGCCGACGG
GGGCAAGCACCGGTTTGTGTGGCGGTACATTGTAGCGTAGGGGAGTGGGGACTGGTGGGACTGGC
CGTGTGGGACGATGACACTGCCAACTAGTAGTGCCTCACATAGTCGTAAGGTCAAGGTGACTTTC
ATTACTTATTACGTTAATACGAACATACGAACATACGAACACTGGTAGAGTAGGTTGGTGGGTCT
GGTGGTGGTGGACTTGATGATTGTGGACTTGGTGGTGGTGGGCCT
Right flanking sequence: Indices 10432 -- 10931
ATAGCTAATAGGTGAATTCCTTGGAATGGCCCATCCACACCACTGGACTCGCCTTGTTTACACAA
CCCAGGGTTGTCTTTTCGCGCTTGATCCTCGTCTAACGACTCGTATGTCAATCCACCACCAGTGT
TGTGTAGACAACCACCCGGACTCAGGGGTGTTTATGGATAGGCCCAATGGGGTCAGGGGTTAGTG
TTGGCTCACATACCTGGTTACGCACCTAACCATCTACGGTAGCCATCTAATGCTGAGGTAGTCAC
AGGAATGTAAACCCGACCGGATCACGCAACCTACATTCTATTGGTCTACTATAGAATAGAGTCTC
CCGACTATGGGGAGATCCATCTATTCTTTAACCACACCCCTCGATCTGAGTAAGTAATCTACCAT
GGCTGAAAACGACAAGAAATCTCCCAGCGGTACCTTCGGTCCCTTGGCTTCTGACCCCGAGGTCG
GGTCTCAACATGGTGAGGCGAACATTTCCTTGAACTCTCTTATGG
Found at i:10982 original size:21 final size:21
Alignment explanation
Indices: 10956--11022 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
10946 CGTTTGGACC
**
10956 GAATTGATAATAAGTTAGAGA
1 GAATTGATGCTAAGTTAGAGA
*
10977 GAATTGATGCTAAGTTTGAGA
1 GAATTGATGCTAAGTTAGAGA
10998 GAATTGATGCTAAGTTCA-AGA
1 GAATTGATGCTAAGTT-AGAGA
11019 GAAT
1 GAAT
11023 CGAGGAACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.30
Consensus pattern (21 bp):
GAATTGATGCTAAGTTAGAGA
Left flanking sequence: Indices 10456 -- 10955
AATGGCCCATCCACACCACTGGACTCGCCTTGTTTACACAACCCAGGGTTGTCTTTTCGCGCTTG
ATCCTCGTCTAACGACTCGTATGTCAATCCACCACCAGTGTTGTGTAGACAACCACCCGGACTCA
GGGGTGTTTATGGATAGGCCCAATGGGGTCAGGGGTTAGTGTTGGCTCACATACCTGGTTACGCA
CCTAACCATCTACGGTAGCCATCTAATGCTGAGGTAGTCACAGGAATGTAAACCCGACCGGATCA
CGCAACCTACATTCTATTGGTCTACTATAGAATAGAGTCTCCCGACTATGGGGAGATCCATCTAT
TCTTTAACCACACCCCTCGATCTGAGTAAGTAATCTACCATGGCTGAAAACGACAAGAAATCTCC
CAGCGGTACCTTCGGTCCCTTGGCTTCTGACCCCGAGGTCGGGTCTCAACATGGTGAGGCGAACA
TTTCCTTGAACTCTCTTATGGTTAAAGTTATGGATCGTTTGGACC
Right flanking sequence: Indices 11023 -- 11522
CGAGGAACTTGATTCTCGCTTCGAGAAACTTCGCTTGGGTAACCCGGAGAACTCCACCAAACCTT
TGGTGAAGGACACCACCCTCCAGGCTCCACTCGGCAAAACCCGCTCGTATGAACCTGTATCCTCC
CTCGATACTTCCTTCATTATGGACTCGCTTCTCCCTGGCCTCGACAATGACTTGCCCGATAAAGT
GAAGGTGCACATCAGTGACCAAGAACTCCTCGTTGCTAGCACACCTGACGCCATCATTGACCGGT
CTGACCCCGAGCATCCCAAGATTCGAACCGAACTCCTTACTCTTTATGTTTAGATGTCTTAGAGC
TACAGTGTTACCGTTTTCACAGATACAGGAATGTAAAGGAATGTAAAGGAATGTAAAGGAATGTA
AAGTTAGCTTCAGGTCTTGCACCCTGGTTGCAGCCATACCCAATTGGGATTGCCACCGGATCATC
CCACTCACTACCCTTGTAGGGCTAAAAATCCTCGTGATTTTTGCG
Found at i:11389 original size:10 final size:10
Alignment explanation
Indices: 11374--11415 Score: 84
Period size: 10 Copynumber: 4.2 Consensus size: 10
11364 TCACAGATAC
11374 AGGAATGTAA
1 AGGAATGTAA
11384 AGGAATGTAA
1 AGGAATGTAA
11394 AGGAATGTAA
1 AGGAATGTAA
11404 AGGAATGTAA
1 AGGAATGTAA
11414 AG
1 AG
11416 TTAGCTTCAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (10 bp):
AGGAATGTAA
Left flanking sequence: Indices 10874 -- 11373
GACCCCGAGGTCGGGTCTCAACATGGTGAGGCGAACATTTCCTTGAACTCTCTTATGGTTAAAGT
TATGGATCGTTTGGACCGAATTGATAATAAGTTAGAGAGAATTGATGCTAAGTTTGAGAGAATTG
ATGCTAAGTTCAAGAGAATCGAGGAACTTGATTCTCGCTTCGAGAAACTTCGCTTGGGTAACCCG
GAGAACTCCACCAAACCTTTGGTGAAGGACACCACCCTCCAGGCTCCACTCGGCAAAACCCGCTC
GTATGAACCTGTATCCTCCCTCGATACTTCCTTCATTATGGACTCGCTTCTCCCTGGCCTCGACA
ATGACTTGCCCGATAAAGTGAAGGTGCACATCAGTGACCAAGAACTCCTCGTTGCTAGCACACCT
GACGCCATCATTGACCGGTCTGACCCCGAGCATCCCAAGATTCGAACCGAACTCCTTACTCTTTA
TGTTTAGATGTCTTAGAGCTACAGTGTTACCGTTTTCACAGATAC
Right flanking sequence: Indices 11416 -- 11915
TTAGCTTCAGGTCTTGCACCCTGGTTGCAGCCATACCCAATTGGGATTGCCACCGGATCATCCCA
CTCACTACCCTTGTAGGGCTAAAAATCCTCGTGATTTTTGCGTATGCTCAGACTTGTTACCAAAG
GTCTAGACCACCTGATCTTTTGGCGATGGTCGAGTCAAGCACAAAATATTGACGGGTAGTTCTGT
GTAGCTTTCACCTCTAGCTTCCGCTTTTTCTCCAACTCCACTCTCTCCGATTCTGTTCGAACTCT
CGAAATCGCTCGGGTTCCTCTGGTTCAATCATCCATTGTTGCTCCACAACTATAAATCACCACAA
GTAAGGGGGACTTACGAGACGAGAATCATGAATACTTGGGGGGCCACCACTAGACGAGACTCATG
AACACCCAGGATGCCCCTAAGACTCTCCAACCCTACAACTTACGAATTATGCTAACATTGATTCA
TATGCAAACGTTCGACAGCCTCACGTCCTTCAAATACCTCATATG
Found at i:16200 original size:16 final size:16
Alignment explanation
Indices: 16179--16215 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
16169 CACGACGCTG
16179 GCCACCCATTACTCTA
1 GCCACCCATTACTCTA
16195 GCCACCCATTACTCTA
1 GCCACCCATTACTCTA
16211 GCCAC
1 GCCAC
16216 ACACTACTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.46, G:0.08, T:0.22
Consensus pattern (16 bp):
GCCACCCATTACTCTA
Left flanking sequence: Indices 15679 -- 16178
TGAGACTGAGAGCACTGCGGGCAAGACGGTTATAGGCAATCATTTAGATCACTGAGACAAGGTTG
CAGGGCCTCCCCAGCAAGAATTAGGGGGTGTTTACCCCGGAAACAAATTTGGTGGCTTAGCCACA
AACGACCCAAAAATGTTCCGTATACGATTAGTCGTGGCTGACAAATAGCAAGCCTCGGCTTTGTA
CAACCCAGGAGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTCGACGACTCGCAATAA
CTATTGCACCTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGGTATAGCCACCTGTTA
ATCCCTCAGAAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAGTTGCCGACTGCCGGT
GGCGTTTAGACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAACAGCACTTGTAATAGC
ATCCGGAATTTAACCGCCTGAGTATTACTCTAGTTCACGACGCTG
Right flanking sequence: Indices 16216 -- 16715
ACACTACTCCAACCTCGAATTCACCAACCTCACGCTATTCCAGCCTATATTCCTCCCACCTTACA
CAAAACTCCGGCTTTACTCATTACCCCCACTAAACTCTTCCATGTACCAAAACACGTCTCTGAAC
CGACGAACGGATAAACTCTACCATCATTTACACAACTCTACATCGTTTCCACAACTCTACCATCA
TTTCTACAACCCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTAC
ACCACCCTACACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTA
TCGCAAATCACCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAAC
GCCGTACGATTCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCT
CAGTAATTACCACCACCGACCACCACCATCCACCACGCCGGGCCC
Found at i:16223 original size:16 final size:16
Alignment explanation
Indices: 16188--16224 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
16178 GGCCACCCAT
* *
16188 TACTCTAGCCACCCAT
1 TACTCTAGCCACACAC
16204 TACTCTAGCCACACAC
1 TACTCTAGCCACACAC
16220 TACTC
1 TACTC
16225 CAACCTCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.43, G:0.05, T:0.24
Consensus pattern (16 bp):
TACTCTAGCCACACAC
Left flanking sequence: Indices 15688 -- 16187
GAGCACTGCGGGCAAGACGGTTATAGGCAATCATTTAGATCACTGAGACAAGGTTGCAGGGCCTC
CCCAGCAAGAATTAGGGGGTGTTTACCCCGGAAACAAATTTGGTGGCTTAGCCACAAACGACCCA
AAAATGTTCCGTATACGATTAGTCGTGGCTGACAAATAGCAAGCCTCGGCTTTGTACAACCCAGG
AGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTCGACGACTCGCAATAACTATTGCAC
CTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGGTATAGCCACCTGTTAATCCCTCAG
AAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAGTTGCCGACTGCCGGTGGCGTTTAG
ACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAACAGCACTTGTAATAGCATCCGGAAT
TTAACCGCCTGAGTATTACTCTAGTTCACGACGCTGGCCACCCAT
Right flanking sequence: Indices 16225 -- 16724
CAACCTCGAATTCACCAACCTCACGCTATTCCAGCCTATATTCCTCCCACCTTACACAAAACTCC
GGCTTTACTCATTACCCCCACTAAACTCTTCCATGTACCAAAACACGTCTCTGAACCGACGAACG
GATAAACTCTACCATCATTTACACAACTCTACATCGTTTCCACAACTCTACCATCATTTCTACAA
CCCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTACACCACCCTA
CACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCGCAAATC
ACCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCCGTACGA
TTCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAGTAATTA
CCACCACCGACCACCACCATCCACCACGCCGGGCCCACGCCTGGC
Found at i:16384 original size:20 final size:20
Alignment explanation
Indices: 16359--16413 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 20
16349 CGAACGGATA
16359 AACTCTACCATCATTTACAC
1 AACTCTACCATCATTTACAC
* *
16379 AACTCTA-CATCGTTTCCAC
1 AACTCTACCATCATTTACAC
16398 AACTCTACCATCATTT
1 AACTCTACCATCATTT
16414 CTACAACCCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.31, C:0.35, G:0.02, T:0.33
Consensus pattern (20 bp):
AACTCTACCATCATTTACAC
Left flanking sequence: Indices 15859 -- 16358
AGCCTCGGCTTTGTACAACCCAGGAGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTC
GACGACTCGCAATAACTATTGCACCTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGG
TATAGCCACCTGTTAATCCCTCAGAAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAG
TTGCCGACTGCCGGTGGCGTTTAGACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAAC
AGCACTTGTAATAGCATCCGGAATTTAACCGCCTGAGTATTACTCTAGTTCACGACGCTGGCCAC
CCATTACTCTAGCCACCCATTACTCTAGCCACACACTACTCCAACCTCGAATTCACCAACCTCAC
GCTATTCCAGCCTATATTCCTCCCACCTTACACAAAACTCCGGCTTTACTCATTACCCCCACTAA
ACTCTTCCATGTACCAAAACACGTCTCTGAACCGACGAACGGATA
Right flanking sequence: Indices 16414 -- 16913
CTACAACCCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTACACC
ACCCTACACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCG
CAAATCACCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCC
GTACGATTCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAG
TAATTACCACCACCGACCACCACCATCCACCACGCCGGGCCCACGCCTGGCCCCCTGGTCCACCC
TGGCCCACCCTCAAACCCCCTCTACACGCCCACACCCCTCTCCACCCGTTTTTCGCAAACCCCGA
GTTAACCTTTCGTTGCTCGTAGAGGCTCTTGGCGGCGTCTACGGAGCCTCACGCTGTATACACAC
CGGGCCCGTCCACCCAGCGGATCCCCCACCAACCGGGCTTAGGTG
Found at i:16414 original size:20 final size:20
Alignment explanation
Indices: 16359--16420 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
16349 CGAACGGATA
*
16359 AACTCTACCATCATTTACAC
1 AACTCTACCATCATTTCCAC
*
16379 AACTCTA-CATCGTTTCCAC
1 AACTCTACCATCATTTCCAC
*
16398 AACTCTACCATCATTTCTAC
1 AACTCTACCATCATTTCCAC
16418 AAC
1 AAC
16421 CCTAACCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 17 0.46
20 20 0.54
ACGTcount: A:0.32, C:0.35, G:0.02, T:0.31
Consensus pattern (20 bp):
AACTCTACCATCATTTCCAC
Left flanking sequence: Indices 15859 -- 16358
AGCCTCGGCTTTGTACAACCCAGGAGGAAAAGCTGGGGAAGGTCGGCCAGCCAAGCTACCCCTTC
GACGACTCGCAATAACTATTGCACCTGTCTTTCTTTTTTTCGTGTTTCGACCTGCCTTCGGTGGG
TATAGCCACCTGTTAATCCCTCAGAAGCAACGCGTCTGGCTTTGTAACCAGCCGAGTTTCACGAG
TTGCCGACTGCCGGTGGCGTTTAGACAGTGTGTGTCGAGGGAGCCACAGTGCCCGTTTTTTGAAC
AGCACTTGTAATAGCATCCGGAATTTAACCGCCTGAGTATTACTCTAGTTCACGACGCTGGCCAC
CCATTACTCTAGCCACCCATTACTCTAGCCACACACTACTCCAACCTCGAATTCACCAACCTCAC
GCTATTCCAGCCTATATTCCTCCCACCTTACACAAAACTCCGGCTTTACTCATTACCCCCACTAA
ACTCTTCCATGTACCAAAACACGTCTCTGAACCGACGAACGGATA
Right flanking sequence: Indices 16421 -- 16920
CCTAACCCACAACCAAACCACCACCCACCACCACCAGCCCCTCACACCACCCTACACCACCCTAC
ACACCCTACAAACCCTACACCCTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCGCAAATCA
CCCCGCTTCTCCACAACGTTTGGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCCGTACGAT
TCTCCTGTGCAACGTAGCGTTTTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAGTAATTAC
CACCACCGACCACCACCATCCACCACGCCGGGCCCACGCCTGGCCCCCTGGTCCACCCTGGCCCA
CCCTCAAACCCCCTCTACACGCCCACACCCCTCTCCACCCGTTTTTCGCAAACCCCGAGTTAACC
TTTCGTTGCTCGTAGAGGCTCTTGGCGGCGTCTACGGAGCCTCACGCTGTATACACACCGGGCCC
GTCCACCCAGCGGATCCCCCACCAACCGGGCTTAGGTGGAACACC
Found at i:16479 original size:10 final size:10
Alignment explanation
Indices: 16459--16506 Score: 64
Period size: 9 Copynumber: 4.9 Consensus size: 10
16449 CACCACCAGC
16459 CCCTCACACCA
1 CCCT-ACACCA
16470 CCCTACACCA
1 CCCTACACCA
16480 CCCTACA-CA
1 CCCTACACCA
*
16489 CCCTACA-AA
1 CCCTACACCA
16498 CCCTACACC
1 CCCTACACC
16507 CTCGGAAGCG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 17 0.50
10 13 0.38
11 4 0.12
ACGTcount: A:0.31, C:0.58, G:0.00, T:0.10
Consensus pattern (10 bp):
CCCTACACCA
Left flanking sequence: Indices 15959 -- 16458
TTTTTCGTGTTTCGACCTGCCTTCGGTGGGTATAGCCACCTGTTAATCCCTCAGAAGCAACGCGT
CTGGCTTTGTAACCAGCCGAGTTTCACGAGTTGCCGACTGCCGGTGGCGTTTAGACAGTGTGTGT
CGAGGGAGCCACAGTGCCCGTTTTTTGAACAGCACTTGTAATAGCATCCGGAATTTAACCGCCTG
AGTATTACTCTAGTTCACGACGCTGGCCACCCATTACTCTAGCCACCCATTACTCTAGCCACACA
CTACTCCAACCTCGAATTCACCAACCTCACGCTATTCCAGCCTATATTCCTCCCACCTTACACAA
AACTCCGGCTTTACTCATTACCCCCACTAAACTCTTCCATGTACCAAAACACGTCTCTGAACCGA
CGAACGGATAAACTCTACCATCATTTACACAACTCTACATCGTTTCCACAACTCTACCATCATTT
CTACAACCCTAACCCACAACCAAACCACCACCCACCACCACCAGC
Right flanking sequence: Indices 16507 -- 17006
CTCGGAAGCGCTGTGCGTCCAGCCCAAAAAATTATCGCAAATCACCCCGCTTCTCCACAACGTTT
GGGTCCGGGTTCGAAATTTAGGTTGGCCCGAAACGCCGTACGATTCTCCTGTGCAACGTAGCGTT
TTCGCGTAGGACGCGACTGCGCCTCGTGCGAGCTCAGTAATTACCACCACCGACCACCACCATCC
ACCACGCCGGGCCCACGCCTGGCCCCCTGGTCCACCCTGGCCCACCCTCAAACCCCCTCTACACG
CCCACACCCCTCTCCACCCGTTTTTCGCAAACCCCGAGTTAACCTTTCGTTGCTCGTAGAGGCTC
TTGGCGGCGTCTACGGAGCCTCACGCTGTATACACACCGGGCCCGTCCACCCAGCGGATCCCCCA
CCAACCGGGCTTAGGTGGAACACCCCAAGCACCACAAAACACCACCACCGTCCACTCTCCACCAC
TCCCACGCCCACCGCCCAGCCCTGAACCCCTCCTCGCCACCCCTC
Found at i:17489 original size:12 final size:12
Alignment explanation
Indices: 17472--17537 Score: 78
Period size: 12 Copynumber: 5.5 Consensus size: 12
17462 GGCTGTTTCG
*
17472 GAAACCAAGTCT
1 GAAACCAAGACT
*
17484 GAAACCAAGGCT
1 GAAACCAAGACT
*
17496 GAAACCAACACT
1 GAAACCAAGACT
*
17508 GAAACCAACACT
1 GAAACCAAGACT
* *
17520 GAAACGAAGGCT
1 GAAACCAAGACT
17532 GAAACC
1 GAAACC
17538 CACACCCTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (12 bp):
GAAACCAAGACT
Left flanking sequence: Indices 16972 -- 17471
ACCGCCCAGCCCTGAACCCCTCCTCGCCACCCCTCGGCTGCCCCTGACGACGCCAGCTTCGGTCA
CATCTCGTCCTGACATCATGCTGCAGCAATGAGGCAATATCCCTGTGTCTCCCCCGCTCTGGTAC
GCGCACGACACAGCCAAAAAAAATTTTGTCGTCATCAAGTCAAAAACAGTGCACCCCCCAGGCGT
TCCGAGACGAACTTACACAACTCCCCTTTTCGACAGCGATGAACAATCTGCGCTCTACCCCGGCG
CGTCCCCCCTGGACGGTGGCGGTGGCCTCGTGCGCCGTTGCGTTTCTCCACATGGTGTACACCTG
GCTCCACCGGGTGTTGGTGACGGTGGTGGTCCACGACGAGCCCGCGGCGACGGCGTTGTTCCCGA
GCAAGGGCAAGCTCGACCACGTGCGCAAGCTCCCGAGCAAGCAGCAAGCGTCGCTTTTCCCTCCC
AGCCCGCGGATGGCGTTGTCTCCGGTATCCCAGCCGGCTGTTTCG
Right flanking sequence: Indices 17538 -- 18037
CACACCCTTTCCAAGACTTTTCCCACCATGACCCCCACCCTCTGTCTGACGGGCCTCACCACCCA
CATCCTCCCGTTCAAAAACGAGAACGGCGAGCTCGAGTGGACGTTTGCCGACGGCGGCGAGGAGC
TCGACGCGTTCCGCATGCTGCCCTCGGACGGCTCGGTGGACGGCTCGCCCGCCAAGGCGTTGCTG
CTGCTGCTGCTGGACAACTTGGCCGAGTCGCCCGACGACGACAAGGTGCACGCGTGCCCGTACTG
CGACACCACGTTCAAGATCCGCGGGTACTTGACCCGCCACTTGAAGAAGCACGCGACGAAAAAGG
CGTACCTGTGCCCGTTCCACAAGTTTTCCACCTACACCGACGACAACAACGTGCCGCACAAGTGC
CACCCCACCGGCGGGTTCTCTCGCCGCGACACCTACAAAACCCACCTCAAATCGCGCCACTTCAC
CTACCCCAACGGCACCAAAACGAAGGACCGCGGCCAGCTGCCGGG
Found at i:17522 original size:36 final size:36
Alignment explanation
Indices: 17472--17542 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
17462 GGCTGTTTCG
**
17472 GAAACCAAGTCTGAAACCAAGGCTGAAACCAACACT
1 GAAACCAACACTGAAACCAAGGCTGAAACCAACACT
* *
17508 GAAACCAACACTGAAACGAAGGCTGAAACCCACAC
1 GAAACCAACACTGAAACCAAGGCTGAAACCAACAC
17543 CCTTTCCAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.30, G:0.17, T:0.08
Consensus pattern (36 bp):
GAAACCAACACTGAAACCAAGGCTGAAACCAACACT
Left flanking sequence: Indices 16972 -- 17471
ACCGCCCAGCCCTGAACCCCTCCTCGCCACCCCTCGGCTGCCCCTGACGACGCCAGCTTCGGTCA
CATCTCGTCCTGACATCATGCTGCAGCAATGAGGCAATATCCCTGTGTCTCCCCCGCTCTGGTAC
GCGCACGACACAGCCAAAAAAAATTTTGTCGTCATCAAGTCAAAAACAGTGCACCCCCCAGGCGT
TCCGAGACGAACTTACACAACTCCCCTTTTCGACAGCGATGAACAATCTGCGCTCTACCCCGGCG
CGTCCCCCCTGGACGGTGGCGGTGGCCTCGTGCGCCGTTGCGTTTCTCCACATGGTGTACACCTG
GCTCCACCGGGTGTTGGTGACGGTGGTGGTCCACGACGAGCCCGCGGCGACGGCGTTGTTCCCGA
GCAAGGGCAAGCTCGACCACGTGCGCAAGCTCCCGAGCAAGCAGCAAGCGTCGCTTTTCCCTCCC
AGCCCGCGGATGGCGTTGTCTCCGGTATCCCAGCCGGCTGTTTCG
Right flanking sequence: Indices 17543 -- 18042
CCTTTCCAAGACTTTTCCCACCATGACCCCCACCCTCTGTCTGACGGGCCTCACCACCCACATCC
TCCCGTTCAAAAACGAGAACGGCGAGCTCGAGTGGACGTTTGCCGACGGCGGCGAGGAGCTCGAC
GCGTTCCGCATGCTGCCCTCGGACGGCTCGGTGGACGGCTCGCCCGCCAAGGCGTTGCTGCTGCT
GCTGCTGGACAACTTGGCCGAGTCGCCCGACGACGACAAGGTGCACGCGTGCCCGTACTGCGACA
CCACGTTCAAGATCCGCGGGTACTTGACCCGCCACTTGAAGAAGCACGCGACGAAAAAGGCGTAC
CTGTGCCCGTTCCACAAGTTTTCCACCTACACCGACGACAACAACGTGCCGCACAAGTGCCACCC
CACCGGCGGGTTCTCTCGCCGCGACACCTACAAAACCCACCTCAAATCGCGCCACTTCACCTACC
CCAACGGCACCAAAACGAAGGACCGCGGCCAGCTGCCGGGCTCGT
Found at i:18691 original size:19 final size:19
Alignment explanation
Indices: 18655--18706 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
18645 GATGAGAACG
18655 AGAACGTG-G-ACGTGAGA
1 AGAACGTGAGAACGTGAGA
*
18672 AGAACGTGAGAACGTTAGA
1 AGAACGTGAGAACGTGAGA
* *
18691 AAAACGTTAGAACGTG
1 AGAACGTGAGAACGTG
18707 GACGTGAGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 8 0.28
18 1 0.03
19 20 0.69
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15
Consensus pattern (19 bp):
AGAACGTGAGAACGTGAGA
Left flanking sequence: Indices 18155 -- 18654
GAAGAAGCTCGAGAAACAGGCGAAGCAGGGGCTTCCCCAGGAGGCGTTTGAGGCCCTGTTGGCCC
AGGACAACACCACCCCGTCCACCAACACCCCGGTGGCGCCCGGGTACGACTACCACACGCTGCCG
GGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTGAACCCGCA
GTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCTGGCGACCC
CGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCGGGTTCCAG
GACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAAGTGCCGCT
TTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCA
CCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACG
Right flanking sequence: Indices 18707 -- 19206
GACGTGAGACGTGAAACGAGACGTGAAACGAGACCGTGAATACGTGGACGTTGATTAGAACGAAA
TCACGAACGAAATCGTGAACGAAGCGTGAGCTAAACGTGAAAAACGTGAAGGAAAGCGTGAACTA
AACGTGAAAAAACGTGAACTTAACGTGAACGAGAACAACGTGACGCGAGAACAGTTTGAACCACA
GCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAGTCACCCGCCCGGGAACTGCCTGGCA
GAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTTATTAGGTGGCCAGCGGAGCTGGCCT
GTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCA
GGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGA
TTGTCCTTGGAATGTCGTCTCGTTGCGGGACCTTTGTTTCTGCAC
Found at i:18729 original size:12 final size:12
Alignment explanation
Indices: 18712--18746 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
18702 ACGTGGACGT
18712 GAGACGTGAAAC
1 GAGACGTGAAAC
18724 GAGACGTGAAAC
1 GAGACGTGAAAC
18736 GAGACCGTGAA
1 GAGA-CGTGAA
18747 TACGTGGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.40, C:0.17, G:0.34, T:0.09
Consensus pattern (12 bp):
GAGACGTGAAAC
Left flanking sequence: Indices 18212 -- 18711
GTTGGCCCAGGACAACACCACCCCGTCCACCAACACCCCGGTGGCGCCCGGGTACGACTACCACA
CGCTGCCGGGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTG
AACCCGCAGTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCT
GGCGACCCCGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCG
GGTTCCAGGACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAA
GTGCCGCTTTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAA
GCTAGGCACCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACGAGAACGTGGACG
TGAGAAGAACGTGAGAACGTTAGAAAAACGTTAGAACGTGGACGT
Right flanking sequence: Indices 18747 -- 19246
TACGTGGACGTTGATTAGAACGAAATCACGAACGAAATCGTGAACGAAGCGTGAGCTAAACGTGA
AAAACGTGAAGGAAAGCGTGAACTAAACGTGAAAAAACGTGAACTTAACGTGAACGAGAACAACG
TGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAG
TCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTT
ATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTG
AGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGCTCATGTGG
GGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGGACCTTTGTTTC
TGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGT
Found at i:18791 original size:12 final size:11
Alignment explanation
Indices: 18776--18868 Score: 75
Period size: 11 Copynumber: 8.5 Consensus size: 11
18766 ACGAAATCAC
18776 GAACGAAATCGT
1 GAACGAAA-CGT
*
18788 GAACGAAGCGT
1 GAACGAAACGT
* *
18799 GAGCTAAACGT
1 GAACGAAACGT
18810 GAA--AAACGT
1 GAACGAAACGT
*
18819 GAAGGAAAGCGT
1 GAACGAAA-CGT
*
18831 GAACTAAACGT
1 GAACGAAACGT
*
18842 GAA-AAAACGT
1 GAACGAAACGT
**
18852 GAACTTAACGT
1 GAACGAAACGT
18863 GAACGA
1 GAACGA
18869 GAACAACGTG
Statistics
Matches: 65, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
9 9 0.14
10 9 0.14
11 31 0.48
12 16 0.25
ACGTcount: A:0.44, C:0.15, G:0.27, T:0.14
Consensus pattern (11 bp):
GAACGAAACGT
Left flanking sequence: Indices 18276 -- 18775
ACGCTGCCGGGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCT
GAACCCGCAGTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGC
TGGCGACCCCGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGC
GGGTTCCAGGACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAA
AGTGCCGCTTTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAA
AGCTAGGCACCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACGAGAACGTGGAC
GTGAGAAGAACGTGAGAACGTTAGAAAAACGTTAGAACGTGGACGTGAGACGTGAAACGAGACGT
GAAACGAGACCGTGAATACGTGGACGTTGATTAGAACGAAATCAC
Right flanking sequence: Indices 18869 -- 19368
GAACAACGTGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCC
CAAAGAAGTCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGGGTA
TGTAATTTATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACAGGG
TAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGC
TCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGGACC
TTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGAGACCCCA
CCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGACATTGTC
GTGTGCGTTGGGCATTGTTCTCGGCCAGGTGGATCGAGCACAGCC
Found at i:18852 original size:21 final size:22
Alignment explanation
Indices: 18804--18865 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
18794 AGCGTGAGCT
18804 AAACGTGAA--AAACGTGAAGGA
1 AAACGTGAACTAAACGTGAA-GA
*
18825 AAGCGTGAACTAAACGTGAA-A
1 AAACGTGAACTAAACGTGAAGA
*
18846 AAACGTGAACTTAACGTGAA
1 AAACGTGAACTAAACGTGAA
18866 CGAGAACAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 27 0.75
23 9 0.25
ACGTcount: A:0.48, C:0.13, G:0.24, T:0.15
Consensus pattern (22 bp):
AAACGTGAACTAAACGTGAAGA
Left flanking sequence: Indices 18304 -- 18803
TTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTGAACCCGCAGTTTGCCTTGGCCCCGAAC
CTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCTGGCGACCCCGTTTGACGCCCACGCGCC
GGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCGGGTTCCAGGACGACTACGGCGACGACT
TTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAAGTGCCGCTTTTCACGGCCTAGGGATGC
AACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCACCGGGCTGGCAGTGGCTCT
GGCATTCGAAGCACGAGATGAGAACGAGAACGTGGACGTGAGAAGAACGTGAGAACGTTAGAAAA
ACGTTAGAACGTGGACGTGAGACGTGAAACGAGACGTGAAACGAGACCGTGAATACGTGGACGTT
GATTAGAACGAAATCACGAACGAAATCGTGAACGAAGCGTGAGCT
Right flanking sequence: Indices 18866 -- 19365
CGAGAACAACGTGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGAC
GCCCAAAGAAGTCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGG
GTATGTAATTTATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACA
GGGTAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTG
GGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGG
ACCTTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGAGACC
CCACCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGACATT
GTCGTGTGCGTTGGGCATTGTTCTCGGCCAGGTGGATCGAGCACA
Found at i:18866 original size:32 final size:32
Alignment explanation
Indices: 18785--18855 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 32
18775 CGAACGAAAT
*
18785 CGTGAACG-AAGCGTGAGCTAAACGTGAAAAA
1 CGTGAACGAAAGCGTGAACTAAACGTGAAAAA
*
18816 CGTGAAGGAAAGCGTGAACTAAACGTGAAAAAA
1 CGTGAACGAAAGCGTGAACTAAACGTG-AAAAA
18849 CGTGAAC
1 CGTGAAC
18856 TTAACGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 7 0.20
32 17 0.49
33 11 0.31
ACGTcount: A:0.44, C:0.15, G:0.28, T:0.13
Consensus pattern (32 bp):
CGTGAACGAAAGCGTGAACTAAACGTGAAAAA
Left flanking sequence: Indices 18285 -- 18784
GGGCTGGTGCTGCTGCTGATTCCCCAGCTGAACACCCCGCCGGTGGTGTTGACGCTGAACCCGCA
GTTTGCCTTGGCCCCGAACCTGGCGATGATGGGGTTTGACCCGCTGCCGCTGCTGCTGGCGACCC
CGTTTGACGCCCACGCGCCGGTGGCGCCGTACGACATGGGCTTTTTGCACCCGGGCGGGTTCCAG
GACGACTACGGCGACGACTTTTGCCTCGACACCGACCAGTTGTTCTACGACCTGAAAGTGCCGCT
TTTCACGGCCTAGGGATGCAACTGCGAGCTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCA
CCGGGCTGGCAGTGGCTCTGGCATTCGAAGCACGAGATGAGAACGAGAACGTGGACGTGAGAAGA
ACGTGAGAACGTTAGAAAAACGTTAGAACGTGGACGTGAGACGTGAAACGAGACGTGAAACGAGA
CCGTGAATACGTGGACGTTGATTAGAACGAAATCACGAACGAAAT
Right flanking sequence: Indices 18856 -- 19355
TTAACGTGAACGAGAACAACGTGACGCGAGAACAGTTTGAACCACAGCGTTCGAGTTGGAGACCG
AATGCTGGACGCCCAAAGAAGTCACCCGCCCGGGAACTGCCTGGCAGAGACTCTTACGATTTATG
AAACTATTGGGTATGTAATTTATTAGGTGGCCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTT
GAAAATCACAGGGTAGGCGTGAGGCAGGCGTGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAG
GCGTGGGTTGGGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTC
TCGTTGCGGGACCTTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAG
TAGCGAGACCCCACCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGG
GGAAGACATTGTCGTGTGCGTTGGGCATTGTTCTCGGCCAGGTGG
Found at i:19098 original size:9 final size:9
Alignment explanation
Indices: 19073--19121 Score: 80
Period size: 9 Copynumber: 5.2 Consensus size: 9
19063 GTAGGCGTGA
19073 GGCAGGCGT
1 GGCAGGCGT
19082 GAGGCAGGCGT
1 --GGCAGGCGT
19093 GGCAGGCGT
1 GGCAGGCGT
19102 GGCAGGCGT
1 GGCAGGCGT
19111 GGCAGGCGT
1 GGCAGGCGT
19120 GG
1 GG
19122 GTTGGGCTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 29 0.76
11 9 0.24
ACGTcount: A:0.12, C:0.20, G:0.57, T:0.10
Consensus pattern (9 bp):
GGCAGGCGT
Left flanking sequence: Indices 18573 -- 19072
CTTGGAGCGAAGACGCGACGAGCTGAAAAGCTAGGCACCGGGCTGGCAGTGGCTCTGGCATTCGA
AGCACGAGATGAGAACGAGAACGTGGACGTGAGAAGAACGTGAGAACGTTAGAAAAACGTTAGAA
CGTGGACGTGAGACGTGAAACGAGACGTGAAACGAGACCGTGAATACGTGGACGTTGATTAGAAC
GAAATCACGAACGAAATCGTGAACGAAGCGTGAGCTAAACGTGAAAAACGTGAAGGAAAGCGTGA
ACTAAACGTGAAAAAACGTGAACTTAACGTGAACGAGAACAACGTGACGCGAGAACAGTTTGAAC
CACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAGTCACCCGCCCGGGAACTGCCT
GGCAGAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTTATTAGGTGGCCAGCGGAGCTG
GCCTGTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTGA
Right flanking sequence: Indices 19122 -- 19621
GTTGGGCTCATGTGGGGCTGATCAGGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTG
CGGGACCTTTGTTTCTGCACTGGTGGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGA
GACCCCACCCGCTAGCCGCTATTGTCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGA
CATTGTCGTGTGCGTTGGGCATTGTTCTCGGCCAGGTGGATCGAGCACAGCCTCGCCTCGATCTC
TGGGCACAAAGGGCCACAAAGGGCCACAAGAAGGTGCAGCGGGCATGGTGGACGCGTGTAGAGCC
AGCTGGGAATTTTTTTTGTGTGTGAGAAGCGTCGTTCTCGAGTGTTGTTCGTCTTAAGTCGTGAC
GAGATAGGGAATAACGGGCGGACAATGTCGCGGTGTCGCGTCGAGTCGGCCCTCGGAGTTAAGGG
TTTGGAGGGGCGGAATAGGGGCAGGGCGAGCGCGACGGGGGTATT
Found at i:19401 original size:10 final size:10
Alignment explanation
Indices: 19386--19410 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
19376 GATCTCTGGG
19386 CACAAAGGGC
1 CACAAAGGGC
19396 CACAAAGGGC
1 CACAAAGGGC
19406 CACAA
1 CACAA
19411 GAAGGTGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00
Consensus pattern (10 bp):
CACAAAGGGC
Left flanking sequence: Indices 18886 -- 19385
AACAGTTTGAACCACAGCGTTCGAGTTGGAGACCGAATGCTGGACGCCCAAAGAAGTCACCCGCC
CGGGAACTGCCTGGCAGAGACTCTTACGATTTATGAAACTATTGGGTATGTAATTTATTAGGTGG
CCAGCGGAGCTGGCCTGTGTAACGGGAACATGTTTGAAAATCACAGGGTAGGCGTGAGGCAGGCG
TGAGGCAGGCGTGGCAGGCGTGGCAGGCGTGGCAGGCGTGGGTTGGGCTCATGTGGGGCTGATCA
GGCAAGGATGTCGCGATTGTCCTTGGAATGTCGTCTCGTTGCGGGACCTTTGTTTCTGCACTGGT
GGCCCCGGCCCATTGTCTATGTTTCAGGTTAGCAGTAGCGAGACCCCACCCGCTAGCCGCTATTG
TCGCCCACGATCAGGTGGTGCCGTGGGAATCGTGGGGAAGACATTGTCGTGTGCGTTGGGCATTG
TTCTCGGCCAGGTGGATCGAGCACAGCCTCGCCTCGATCTCTGGG
Right flanking sequence: Indices 19411 -- 19910
GAAGGTGCAGCGGGCATGGTGGACGCGTGTAGAGCCAGCTGGGAATTTTTTTTGTGTGTGAGAAG
CGTCGTTCTCGAGTGTTGTTCGTCTTAAGTCGTGACGAGATAGGGAATAACGGGCGGACAATGTC
GCGGTGTCGCGTCGAGTCGGCCCTCGGAGTTAAGGGTTTGGAGGGGCGGAATAGGGGCAGGGCGA
GCGCGACGGGGGTATTTGGGGCCTGGAGAATTGCGTGTAGGTTTTGGACGCCCGAAGGTTTTCAA
AGTGGAGAGGGGAAGACTCGGGAAGTCAGCTGAGTGTTCGGAAAATTGACCGTGATACGAGTGTC
AAAAATGTAATCTACTAGAGCAATTAATCCACTAGACGCTCTCACAATTGTGCCTACTGACAGCC
CGAGAAATCTGGCCCAGAACTTTGGTCCTAAAAATTAGCCCAAGAAAATAGAAAGCCCTATTTTT
AACCTTATAAACCCGTGGCTCGGCGTTTCGTACACCAACCAAAGC
Found at i:21921 original size:16 final size:17
Alignment explanation
Indices: 21902--21936 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
21892 TGGTGTTTCA
*
21902 GGGATGGGGTGG-GGAT
1 GGGATGGCGTGGTGGAT
21918 GGGATGGCGTGGTGGAT
1 GGGATGGCGTGGTGGAT
21935 GG
1 GG
21937 CGGTGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.11, C:0.03, G:0.66, T:0.20
Consensus pattern (17 bp):
GGGATGGCGTGGTGGAT
Left flanking sequence: Indices 21402 -- 21901
TTTTTCGTCTTGAGCAACAACAACATACACACGCATATAAACTCTTTGAGACACTCGCCCTGGTA
GAAAAGCGGGGGGTCGGTCACCATGGGGTCCTGTTCGTTGAGTGCCAGCAACAACAGCAAAAGCT
TGCCCAAGCAAAACCGGTAGTTTTTTACAAACAAGTTCAGGGTCACTACTTTGAGTGCATAGCAC
GAAAGCGTCTCGTAGGTGTGCCCGGTGAACGCGCCAGCGTCTTGCGATAGGTACAAGTTGTCGAG
AACCGCCTTGATCACGATCGAGAGGTTCTCGTTGCACTCATTGGGGTCCAGCAAAATGAGGACGG
GGGTGAGCTCGTCGTCTAGCGTGCGTACGGCCACCCCGCGAACCGTCATCGAATGGGTCTAAAGG
GTGGGGTTGAGCTGGTGAACCTGGTTCGGTATAGTGCGACCCGCGCGCTCGCAACCGGGGGTTAC
GCGAGGAGAGCAGGGGAAACACGTCATCAACAGGGTGGTGTTTCA
Right flanking sequence: Indices 21937 -- 22436
CGGTGAGCTGACACGCAGGGGGTGAGACGTAGTGGTGTGAGAGTGGTGTGGGGGAAGAGGAAATG
GGGGTTGGAAAGGACTCGACGGAATAACACTATGAGGGATGAGAAGGATAGTAGAAGAAAGGTTC
GTAAGGTAGGCAGGGCCGTGCTTATGGAGGGGCATAGGTTGTGGCGTCGAGACGTGGTCCCCGGG
CCTGCTCGTCGACAAAACTTCGTTGGGGTGGCAAATTGAGCTGTCGTACTGAAGCAACATCACCA
TTGTGTGCGTCGATATTCCAGTCCGTAGTCGATTTGCAAATGGCTCAAGCATCTTGCTGCTAGTT
GCACCATCCACTCTTGTATGGTATTTTTTCCACAAATTTTATTCGTCCGATGTAGTGTAATGGCT
ATCACGGTTCGCTCTCACCGAGCAGATCAGGGTTCGATTCCCTGCTTCGGAGTCTTTTTTTCCAC
CCATTTTTTGTCTCGAGTGACGTCCTAGCGGATAGCCGCTAAAGT
Found at i:24338 original size:141 final size:141
Alignment explanation
Indices: 24084--25249 Score: 1475
Period size: 141 Copynumber: 8.3 Consensus size: 141
24074 CCCTGATGAG
24084 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* * *
24149 TTCAGGAGTGATTGTTGTCACCACGGACGAAGAGGGTGTGCTTACAACCAGCACTTCGCTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
24214 CACGACCAACC
131 CACGACCAACC
* * * * *
24225 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACTACTGATGAAAATGGAGCTACCTATACTGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* * * * *
24290 CTCAGGAGTGGTTATCGTGACGACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
24355 CACGACCAACC
131 CACGACCAACC
* * * * *
24366 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACTACTGATGAAAATGGAGCTACCTATACTGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* * * * * *
24431 CTCAGGAGTGGTTATCGTGACGACGGACGAAGAGGGTGTGCTTACAACCAGCACATCGCTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
*
24496 CACGACCCACC
131 CACGACCAACC
24507 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* *
24572 TTCAGGAGTGATTGTTGTCACCACGGACGAAGAGGGTGTGCTTACAACCAGCACATCGCTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
24637 CACGACCAACC
131 CACGACCAACC
*
24648 TGTGAAGAGTGCACTGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* * *
24713 TTCAGGTGTGATTGTTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCACTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
24778 CACGACCAACC
131 CACGACCAACC
*
24789 TGCGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* * *
24854 TTCAGGTGTGATTGTTGTCACCACGGACGAAGAGGGTGTGCTTACAACCAGCACATCGCTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
*
24919 CAAGACCAACC
131 CACGACCAACC
* * * ** * * * * *
24930 TGTGAAGAATGTACTAC-A-TTCACAACCACATGGGTCACCACTG-TG-G-ATGGTA--TGATCA
1 TGTGAAGAGTGCAC--CGAGTTCACCAGTACGT-GG--ACCACTGACGAGAACGG-AGCT-ACCT
* * * * * * * * * * ** * * * *
24988 AGACGGTTTCAGGAGAGGTAATTGTAACTACTGATGCCGAGGGAG-GCCTTTCTACTACCACATC
59 ATACCGATTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTG-CTTACAACCACCACATC
* * * * *
25052 GATTTTCCCCCAACCCACC
123 GCTATTCCCACGACCAACC
* * *
25071 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAAAATGGAGCTACCTATACTGA
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
* * * * * * * * *
25136 CTCAGGAGTGGTCATCGTGACGACGGACGAGGATGGTGTGCTTACGACCACCACATCGCTATTCC
66 TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
25201 CACGACCAACC
131 CACGACCAACC
* *
25212 TGTGATGAGTGCACTGAGTTCACCAGTACGTGGACCAC
1 TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCAC
25250 AACTAACAAC
Statistics
Matches: 902, Mismatches: 107, Indels: 32
0.87 0.10 0.03
Matches are distributed among these distances:
138 7 0.01
139 2 0.00
140 6 0.01
141 871 0.97
142 7 0.01
143 2 0.00
144 7 0.01
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (141 bp):
TGTGAAGAGTGCACCGAGTTCACCAGTACGTGGACCACTGACGAGAACGGAGCTACCTATACCGA
TTCAGGAGTGATTATTGTCACCACGGACGAAGAGGGTGTGCTTACAACCACCACATCGCTATTCC
CACGACCAACC
Left flanking sequence: Indices 23584 -- 24083
GGGACCATTTCCGTAGACGCTTAAACTTATACGGATCAGGAAGTTTCGATAATTCCGGAGATATA
TGTTTGGAGAATGGTTTGGTGAGAATACCGGAGAATCAAGTTGGTACTGGCTGTTACCATATCTT
GGGAATTACGGAAGTTGAAGATATTTATAGCCCCCATGAGCAAACTTATCAGTTTTCGCCAGGTT
CAATCGGTACACTAAATGTGAACAACGAACACACAGTTCGCGGGTTTGGTGAGGGCATGTTGATA
AGAACATCAGCAGAGGCTCGAATCGAAAATGATCATTACATTGTTTGGGAGGGTTGGGCTGAAGA
TGGATACATTGATATGACCGTTGACCTCGGACCCGGCTACGACGTGAATTTATTCGATATCATCG
AGAACGAAGTACGATACAATGGTCCTGTTCCATCAGAGGCAGCCACTGCTGAGAACTGTGGAGTT
TGTCCGCCCCCTTTAGATTGTTTAGACGCTCCGCTCCCTGATGAG
Right flanking sequence: Indices 25250 -- 25749
AACTAACAACGATGGCTCCGTTCAAACCGAGTCTGGGGTTGTTGTAATAACTACGGATGCGGAGG
GGGCCATGACCACTTTCACGTCGTTATTTCCTCAACCAACTGCTGAATGCATGGAGTGCACTGAG
TTTACGTCGACATGGACAACCACTGCAGACGATGGGTCCCTTCAAACGGAATCAGGGGTGATTCT
AGTGACTACAGATGAGTCAGGGGCCTTAACAACCATTACTTCGTTGTTCCCAAACTACGATGACT
GCCCTGAGTGCACGGAGTTTACTACAGAGTGGACAACCACGGCACAAGATGGATCCGTGATAACT
GAGTCCGGTGTGGTATTGGTCACCACTGATGAAGCTGGGATGCTTACAACTGCAACTTCTCTTTT
CCCCGGGGCGTGTGATGGCTGTACAGAGTTCACCACTAGTTGGACGACCACGGCAGGAGACGGAT
CTGTCCAAACGGACCTGGGGGTGGTTATCATCACCACAAACGAAG
Found at i:29781 original size:85 final size:85
Alignment explanation
Indices: 29638--29807 Score: 331
Period size: 85 Copynumber: 2.0 Consensus size: 85
29628 TCCAAAACTT
*
29638 CACCGTGTGAACCAAAAACCCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
1 CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
29703 CTTGATTCACCTGACACGGC
66 CTTGATTCACCTGACACGGC
29723 CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
1 CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
29788 CTTGATTCACCTGACACGGC
66 CTTGATTCACCTGACACGGC
29808 TACGCCTTTC
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (85 bp):
CACCGTGTGAACCAAAAAACCATACGTTTGTTTGGAAGTTGGAATGATGTAAAAGCCTGCCCTGA
CTTGATTCACCTGACACGGC
Left flanking sequence: Indices 29138 -- 29637
TCACCAGACACGTCGTCCTCCGTTTCCATATTATTTGCAATCATCATGTAAGAGGGTAAGTGACC
AAGCCTTCCCATTTGTGTTTTCCCCACCGAGAGCTTCTGAGTTTCTCTGACCCGATAACAAATCC
GAGGACGACTTGCAACACCTAGATTCGTACTTCAACACATCCTGCCTGGAAAAGCTTGCTGAGAA
CAGAATATCTCGTTGAGTTTTGTGATACTGATTGGCACAATACTGTGAATCAGATGACACGAACG
TTGTAGCGTAACGATCTGACATGCAGAAAGTTGCATCGCCGTTGTACTCAAAAAGAAACTTTGCA
AATCGAGAAAGCCGGTTTCTTTATTAAGGGGATGGAGGTGTCACATCGGTGGGCATTTTTTGGAT
AGCAAGGTGAGAATTGAGGTCCTTTGAACTTTGGTTGCCGAGCATCTTTGAGGGTTCATCTCCTT
TCGCCATGCGTGCGCTATGGAAGTCGCAGAACAATTCCAAAACTT
Right flanking sequence: Indices 29808 -- 30307
TACGCCTTTCAGCAGCGTATCAACGCTTGCAACTGAAGTAAACACCGGCTAAACAGCAGCCACTT
CTGTGATCACAATTGATGGGTGGAATAACTCAATTCACGGTTGTGACTGATCAAAATCGGGAGGT
GCCAACACCACGACAAGTCCGAACGGGCACATAATAATTGAGTCTGGATTGGTCAAAGATGTAAC
TGGCCGAGAAGAGACCACATGGGTCCAACGTCGTTAGCCATTTGGTTCGGTCCATCCTGGAACAG
AGTTCATTATTATCACTGCCGCGAATAGACACGTAGTCAACGCCAATGCCTCAGACTCTGCAAGG
GTTGGTAACAACCGTGGAGTGTGATGGTGAAGATTCCAGGGCATGACGTTTCATTCCGGCTGAGC
AACCACATCGATGGGTTTCTCAAAGATTCTCTCCTGAAACGCTCGGACAACCTGTAGAAGATAGT
GTCAACACTATCGGTTGACCTGAGGTCTGTTAAATCTCAGGTGGC
Found at i:35857 original size:13 final size:14
Alignment explanation
Indices: 35818--35864 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
35808 AGACTTCCTA
35818 CTACGCCATCACGG
1 CTACGCCATCACGG
*
35832 CTACGCAATCACGG
1 CTACGCCATCACGG
*
35846 -TACTCCATCACGG
1 CTACGCCATCACGG
35859 CTACGC
1 CTACGC
35865 AACCACGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.23, C:0.40, G:0.19, T:0.17
Consensus pattern (14 bp):
CTACGCCATCACGG
Left flanking sequence: Indices 35318 -- 35817
ACTTTGTATTTTGCGCCAGTCTTCAATATAGTCTATTCCGTATTCAATCCGTCTTCGTTCTTCTG
AGAATACCATAACCTCAAGAATACCCAGTGTTTTCATAGCTGTAGTTGTGACCCGACTTCAGGGT
CAGATGCCAAGGGACCAAAGGCCCTTAGTTGGATTCTTGTCGTTCTTAGCCATGGTAGATTTTTT
ACTCAGATCGAAGGGTGGGAAGTGTTATGAGATTAGATGAAAACCCCAATAGTTGGGAGACTCTA
TACTATATATTGACAATATCCAGGAATGTAGTTTGCGTACCTATTAAGGCTTACATCCTGTAACT
ACCACATTGTAAGTTGGCTACCATAATTTGTAGACATGGGATCCAATAGCTATCATTTTCTAAAC
ACACCTCACCGATGGTCTCAGATATAAGCCCTCTATCATCAAAAAACCACCTCTTTCTACCTTTA
CATCCACTGTGTATTCACTGTCTAGTTCGTTTGTAAGACTTCCTA
Right flanking sequence: Indices 35865 -- 36364
AACCACGGTACACTCCCCGTTGCACTCCGGGTCCAACGCGAGCCGCACAACCTCCTCGGCCACCG
TCTCCACCGGTACCATGGCCACGTCCACCCCGGCCGCCCGCCCCATGTCCGTGTCCATGAGCCCC
GGCAACACCGCGTTGAACCGGACCGCCCCCTTGAGCTCCACCGCCATCAGCCGGGTGAACGCCAC
GAGCCCGGCCTTGGTCGCAGCGTACACCGCGGTCCCGGGCGCCACCGCCAAGTCGGCGTTCGCAA
GCACCAGCGCGACATTGACCACGACGGGATTCGAACTCCGGAGCTTCATGAACGGACGCAACACA
TCGCGGGACATCCCCATGGGAGCAACCAAGTTGGTGCCCACGACGTCGAGCATGGACTGGGTGCG
GGTGCGCATGAGCAACCCGCCGTCGCCGATGCCCGCGCAGTTGACGAGAATGGTGGCGTCGTCGT
ACCGGACCTCGTCCCAGTGCCGGCCCACGTCCACCACCTGGAAGC
Found at i:35861 original size:27 final size:27
Alignment explanation
Indices: 35823--35875 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
35813 TCCTACTACG
*
35823 CCATCACGGCTACGCAATCACGGTACT
1 CCATCACGGCTACGCAACCACGGTACT
35850 CCATCACGGCTACGCAACCACGGTAC
1 CCATCACGGCTACGCAACCACGGTAC
35876 ACTCCCCGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.40, G:0.19, T:0.15
Consensus pattern (27 bp):
CCATCACGGCTACGCAACCACGGTACT
Left flanking sequence: Indices 35323 -- 35822
GTATTTTGCGCCAGTCTTCAATATAGTCTATTCCGTATTCAATCCGTCTTCGTTCTTCTGAGAAT
ACCATAACCTCAAGAATACCCAGTGTTTTCATAGCTGTAGTTGTGACCCGACTTCAGGGTCAGAT
GCCAAGGGACCAAAGGCCCTTAGTTGGATTCTTGTCGTTCTTAGCCATGGTAGATTTTTTACTCA
GATCGAAGGGTGGGAAGTGTTATGAGATTAGATGAAAACCCCAATAGTTGGGAGACTCTATACTA
TATATTGACAATATCCAGGAATGTAGTTTGCGTACCTATTAAGGCTTACATCCTGTAACTACCAC
ATTGTAAGTTGGCTACCATAATTTGTAGACATGGGATCCAATAGCTATCATTTTCTAAACACACC
TCACCGATGGTCTCAGATATAAGCCCTCTATCATCAAAAAACCACCTCTTTCTACCTTTACATCC
ACTGTGTATTCACTGTCTAGTTCGTTTGTAAGACTTCCTACTACG
Right flanking sequence: Indices 35876 -- 36375
ACTCCCCGTTGCACTCCGGGTCCAACGCGAGCCGCACAACCTCCTCGGCCACCGTCTCCACCGGT
ACCATGGCCACGTCCACCCCGGCCGCCCGCCCCATGTCCGTGTCCATGAGCCCCGGCAACACCGC
GTTGAACCGGACCGCCCCCTTGAGCTCCACCGCCATCAGCCGGGTGAACGCCACGAGCCCGGCCT
TGGTCGCAGCGTACACCGCGGTCCCGGGCGCCACCGCCAAGTCGGCGTTCGCAAGCACCAGCGCG
ACATTGACCACGACGGGATTCGAACTCCGGAGCTTCATGAACGGACGCAACACATCGCGGGACAT
CCCCATGGGAGCAACCAAGTTGGTGCCCACGACGTCGAGCATGGACTGGGTGCGGGTGCGCATGA
GCAACCCGCCGTCGCCGATGCCCGCGCAGTTGACGAGAATGGTGGCGTCGTCGTACCGGACCTCG
TCCCAGTGCCGGCCCACGTCCACCACCTGGAAGCGGTGGCCGTCC
Found at i:36658 original size:9 final size:9
Alignment explanation
Indices: 36644--36671 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
36634 CCATCCAAAT
36644 CCATCCCAC
1 CCATCCCAC
36653 CCATCCCAC
1 CCATCCCAC
36662 CCATCCCAC
1 CCATCCCAC
36671 C
1 C
36672 AACCTCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.68, G:0.00, T:0.11
Consensus pattern (9 bp):
CCATCCCAC
Left flanking sequence: Indices 36144 -- 36643
CACGACGGGATTCGAACTCCGGAGCTTCATGAACGGACGCAACACATCGCGGGACATCCCCATGG
GAGCAACCAAGTTGGTGCCCACGACGTCGAGCATGGACTGGGTGCGGGTGCGCATGAGCAACCCG
CCGTCGCCGATGCCCGCGCAGTTGACGAGAATGGTGGCGTCGTCGTACCGGACCTCGTCCCAGTG
CCGGCCCACGTCCACCACCTGGAAGCGGTGGCCGTCCCCGGGCAACGACGCCACCGCCTGCTGGA
GGAGGGTGCGGTTGCGGGCTATCAACGTGGTGGGGATGTGATGTGCCGCCATCGCCTGGGCTATC
GCGAGGCCGAGCCCACGGGATCCCCCGGTGATCAATGCTCTCATGGTGGGTGAATTTGTGGTGCG
AGCCCTGGCCAAATCCGATCGTTCTATTTTGGTGGGTGGCCGTGGGTGGAAAAAGGGTCCAGGCT
AGGTCCAAAGTCGTATAGGGGATATAAATTCGAATCCATCCAAAT
Right flanking sequence: Indices 36672 -- 37171
AACCTCTAATCACAGCGGATTATCTTCCTCTACTGTCTTACTCTGTCTTCCTCTACTGTTTTCCC
TCTCTACTGTCTTCCTCTACTGTCTTCCTCTACTGTCTTCCTCTAATGTTTTCCACTACTGTCTT
TCTCTACTGTTTTCCCTCTCTACTATCTTCTCTGTCTACTATCTTCCCTTTCTACTATCTTCCCT
CTCTACTATCTTCTCTACTATCTTCTCTACTATCTTCTCTACTATCATCCATCTACTGTCTTCTC
TGTCGCCCTGCAGGACCGCAATGCTATCGTTTACGTCAACGATGGCCCCATCCATGCACCGTCGC
GATCGGTTGTCGTTTACCGTCACCACCGCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTG
ACGGCAGCCCAAAACGGCAGCAAAACCGTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTAT
ATACCGTATATCCTCGCTAGCTGCTAGCGACCGCCACATCGCAAG
Found at i:36715 original size:13 final size:13
Alignment explanation
Indices: 36694--36929 Score: 151
Period size: 13 Copynumber: 17.4 Consensus size: 13
36684 CAGCGGATTA
36694 TCTTCCTCTACTG
1 TCTTCCTCTACTG
*
36707 TCTT--ACT-CTG
1 TCTTCCTCTACTG
36717 TCTTCCTCTACTG
1 TCTTCCTCTACTG
*
36730 TTTTCCCTCTCTACTG
1 TCTT--C-CTCTACTG
36746 TCTTCCTCTACTG
1 TCTTCCTCTACTG
36759 TCTTCCTCTACTG
1 TCTTCCTCTACTG
*
36772 TCTTCCTCTAATG
1 TCTTCCTCTACTG
* *
36785 TTTTCCACTACTG
1 TCTTCCTCTACTG
*
36798 TCTTTCTCTACTG
1 TCTTCCTCTACTG
* *
36811 TTTTCCCTCTCTACTA
1 TCTT--C-CTCTACTG
*
36827 TCTTCTCTGTCTACTA
1 TCTTC-C--TCTACTG
*
36843 TCTTCCCTTTCTACTA
1 TCTT-CC--TCTACTG
*
36859 TCTTCCCTCTCTACTA
1 TCTT--C-CTCTACTG
*
36875 TCTT-CTCTACTA
1 TCTTCCTCTACTG
*
36887 TCTT-CTCTACTA
1 TCTTCCTCTACTG
*
36899 TCTT-CTCTACTA
1 TCTTCCTCTACTG
*
36911 TCATCCATCTACTG
1 TCTTCC-TCTACTG
36925 TCTTC
1 TCTTC
36930 TCTGTCGCCC
Statistics
Matches: 188, Mismatches: 19, Indels: 31
0.79 0.08 0.13
Matches are distributed among these distances:
10 7 0.04
11 2 0.01
12 37 0.20
13 67 0.36
14 14 0.07
15 1 0.01
16 56 0.30
17 3 0.02
18 1 0.01
ACGTcount: A:0.12, C:0.36, G:0.05, T:0.48
Consensus pattern (13 bp):
TCTTCCTCTACTG
Left flanking sequence: Indices 36194 -- 36693
GGGACATCCCCATGGGAGCAACCAAGTTGGTGCCCACGACGTCGAGCATGGACTGGGTGCGGGTG
CGCATGAGCAACCCGCCGTCGCCGATGCCCGCGCAGTTGACGAGAATGGTGGCGTCGTCGTACCG
GACCTCGTCCCAGTGCCGGCCCACGTCCACCACCTGGAAGCGGTGGCCGTCCCCGGGCAACGACG
CCACCGCCTGCTGGAGGAGGGTGCGGTTGCGGGCTATCAACGTGGTGGGGATGTGATGTGCCGCC
ATCGCCTGGGCTATCGCGAGGCCGAGCCCACGGGATCCCCCGGTGATCAATGCTCTCATGGTGGG
TGAATTTGTGGTGCGAGCCCTGGCCAAATCCGATCGTTCTATTTTGGTGGGTGGCCGTGGGTGGA
AAAAGGGTCCAGGCTAGGTCCAAAGTCGTATAGGGGATATAAATTCGAATCCATCCAAATCCATC
CCACCCATCCCACCCATCCCACCAACCTCTAATCACAGCGGATTA
Right flanking sequence: Indices 36930 -- 37429
TCTGTCGCCCTGCAGGACCGCAATGCTATCGTTTACGTCAACGATGGCCCCATCCATGCACCGTC
GCGATCGGTTGTCGTTTACCGTCACCACCGCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAAC
TGACGGCAGCCCAAAACGGCAGCAAAACCGTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGT
ATATACCGTATATCCTCGCTAGCTGCTAGCGACCGCCACATCGCAAGGCACCCCTGTGCTCTCAG
CCTAGTGCGCCCGCCATTTGCTCGCGTTCCCGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTT
CGCGGTCATGACTAGCAAGCCTGCACGGGGGCCCAACAGAAATGGTCACGGTAGCAGGCGATATA
TAGAGCAGGCCGCCGCCCAGCCACCGCCGCCCCCGCCACCGCCAACCCCCGAAACGCCGGCCCCG
CTCTCCCTACCCCGTAAAACCCCTGGTTGGCCCCCTACCACCCTG
Found at i:36849 original size:32 final size:32
Alignment explanation
Indices: 36802--36894 Score: 113
Period size: 32 Copynumber: 3.0 Consensus size: 32
36792 CTACTGTCTT
* *
36802 TCTCTACTGTTTTCCCTCTCTACTATCTTCTC
1 TCTCTACTATCTTCCCTCTCTACTATCTTCTC
* * *
36834 TGTCTACTATCTTCCCTTTCTACTATCTTCCC
1 TCTCTACTATCTTCCCTCTCTACTATCTTCTC
36866 TCTCTACTATC-T---TCTCTACTATCTTCTC
1 TCTCTACTATCTTCCCTCTCTACTATCTTCTC
36894 T
1 T
36895 ACTATCTTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 15 0.28
31 1 0.02
32 37 0.70
ACGTcount: A:0.12, C:0.37, G:0.02, T:0.49
Consensus pattern (32 bp):
TCTCTACTATCTTCCCTCTCTACTATCTTCTC
Left flanking sequence: Indices 36302 -- 36801
GAATGGTGGCGTCGTCGTACCGGACCTCGTCCCAGTGCCGGCCCACGTCCACCACCTGGAAGCGG
TGGCCGTCCCCGGGCAACGACGCCACCGCCTGCTGGAGGAGGGTGCGGTTGCGGGCTATCAACGT
GGTGGGGATGTGATGTGCCGCCATCGCCTGGGCTATCGCGAGGCCGAGCCCACGGGATCCCCCGG
TGATCAATGCTCTCATGGTGGGTGAATTTGTGGTGCGAGCCCTGGCCAAATCCGATCGTTCTATT
TTGGTGGGTGGCCGTGGGTGGAAAAAGGGTCCAGGCTAGGTCCAAAGTCGTATAGGGGATATAAA
TTCGAATCCATCCAAATCCATCCCACCCATCCCACCCATCCCACCAACCTCTAATCACAGCGGAT
TATCTTCCTCTACTGTCTTACTCTGTCTTCCTCTACTGTTTTCCCTCTCTACTGTCTTCCTCTAC
TGTCTTCCTCTACTGTCTTCCTCTAATGTTTTCCACTACTGTCTT
Right flanking sequence: Indices 36895 -- 37394
ACTATCTTCTCTACTATCATCCATCTACTGTCTTCTCTGTCGCCCTGCAGGACCGCAATGCTATC
GTTTACGTCAACGATGGCCCCATCCATGCACCGTCGCGATCGGTTGTCGTTTACCGTCACCACCG
CTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTGACGGCAGCCCAAAACGGCAGCAAAACCG
TTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTATATACCGTATATCCTCGCTAGCTGCTAGC
GACCGCCACATCGCAAGGCACCCCTGTGCTCTCAGCCTAGTGCGCCCGCCATTTGCTCGCGTTCC
CGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTTCGCGGTCATGACTAGCAAGCCTGCACGGGG
GCCCAACAGAAATGGTCACGGTAGCAGGCGATATATAGAGCAGGCCGCCGCCCAGCCACCGCCGC
CCCCGCCACCGCCAACCCCCGAAACGCCGGCCCCGCTCTCCCTAC
Found at i:36883 original size:12 final size:12
Alignment explanation
Indices: 36866--36932 Score: 98
Period size: 12 Copynumber: 5.4 Consensus size: 12
36856 CTATCTTCCC
36866 TCTCTACTATCT
1 TCTCTACTATCT
36878 TCTCTACTATCT
1 TCTCTACTATCT
36890 TCTCTACTATCT
1 TCTCTACTATCT
36902 TCTCTACTATCAT
1 TCTCTACTATC-T
* *
36915 CCATCTACTGTCT
1 TC-TCTACTATCT
36928 TCTCT
1 TCTCT
36933 GTCGCCCTGC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
12 38 0.76
13 4 0.08
14 8 0.16
ACGTcount: A:0.16, C:0.34, G:0.01, T:0.48
Consensus pattern (12 bp):
TCTCTACTATCT
Left flanking sequence: Indices 36366 -- 36865
GTGGCCGTCCCCGGGCAACGACGCCACCGCCTGCTGGAGGAGGGTGCGGTTGCGGGCTATCAACG
TGGTGGGGATGTGATGTGCCGCCATCGCCTGGGCTATCGCGAGGCCGAGCCCACGGGATCCCCCG
GTGATCAATGCTCTCATGGTGGGTGAATTTGTGGTGCGAGCCCTGGCCAAATCCGATCGTTCTAT
TTTGGTGGGTGGCCGTGGGTGGAAAAAGGGTCCAGGCTAGGTCCAAAGTCGTATAGGGGATATAA
ATTCGAATCCATCCAAATCCATCCCACCCATCCCACCCATCCCACCAACCTCTAATCACAGCGGA
TTATCTTCCTCTACTGTCTTACTCTGTCTTCCTCTACTGTTTTCCCTCTCTACTGTCTTCCTCTA
CTGTCTTCCTCTACTGTCTTCCTCTAATGTTTTCCACTACTGTCTTTCTCTACTGTTTTCCCTCT
CTACTATCTTCTCTGTCTACTATCTTCCCTTTCTACTATCTTCCC
Right flanking sequence: Indices 36933 -- 37432
GTCGCCCTGCAGGACCGCAATGCTATCGTTTACGTCAACGATGGCCCCATCCATGCACCGTCGCG
ATCGGTTGTCGTTTACCGTCACCACCGCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTGA
CGGCAGCCCAAAACGGCAGCAAAACCGTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTATA
TACCGTATATCCTCGCTAGCTGCTAGCGACCGCCACATCGCAAGGCACCCCTGTGCTCTCAGCCT
AGTGCGCCCGCCATTTGCTCGCGTTCCCGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTTCGC
GGTCATGACTAGCAAGCCTGCACGGGGGCCCAACAGAAATGGTCACGGTAGCAGGCGATATATAG
AGCAGGCCGCCGCCCAGCCACCGCCGCCCCCGCCACCGCCAACCCCCGAAACGCCGGCCCCGCTC
TCCCTACCCCGTAAAACCCCTGGTTGGCCCCCTACCACCCTGGCT
Found at i:37359 original size:15 final size:14
Alignment explanation
Indices: 37329--37362 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
37319 ATAGAGCAGG
37329 CCGCCGCCCAGCCA
1 CCGCCGCCCAGCCA
*
37343 CCGCCGCCCCCGCCA
1 CCGCCG-CCCAGCCA
37358 CCGCC
1 CCGCC
37363 AACCCCCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.09, C:0.71, G:0.21, T:0.00
Consensus pattern (14 bp):
CCGCCGCCCAGCCA
Left flanking sequence: Indices 36829 -- 37328
TTCTCTGTCTACTATCTTCCCTTTCTACTATCTTCCCTCTCTACTATCTTCTCTACTATCTTCTC
TACTATCTTCTCTACTATCATCCATCTACTGTCTTCTCTGTCGCCCTGCAGGACCGCAATGCTAT
CGTTTACGTCAACGATGGCCCCATCCATGCACCGTCGCGATCGGTTGTCGTTTACCGTCACCACC
GCTCTCTTTTCTTTTCTCGGCCCAAAATTCAACAACTGACGGCAGCCCAAAACGGCAGCAAAACC
GTTGAACTGTGGGGAACGCCTGTGGGCAACCATCGTATATACCGTATATCCTCGCTAGCTGCTAG
CGACCGCCACATCGCAAGGCACCCCTGTGCTCTCAGCCTAGTGCGCCCGCCATTTGCTCGCGTTC
CCGTCGTACCCTCGGTCTCTTTCTCCTGCCCTTCTTCGCGGTCATGACTAGCAAGCCTGCACGGG
GGCCCAACAGAAATGGTCACGGTAGCAGGCGATATATAGAGCAGG
Right flanking sequence: Indices 37363 -- 37862
AACCCCCGAAACGCCGGCCCCGCTCTCCCTACCCCGTAAAACCCCTGGTTGGCCCCCTACCACCC
TGGCTGTATACACACCCGCGCACGTGATGAACCTACTAGCCACCGAAATAACCCAGTCTCCACCT
CGGATCCCAGCGCTCACAGCACCCCCGATGAACTCGCTCAAGTTGGTGGTGAACCGCATCCTGCC
GTACTCGCACCCGGAGTACAGCGAGTCCCAGGAGCTGAGGTTGGCTCCCCAGGTGCTGGCGGACC
CCGACGACTCCGACGACCCCCCGGGGCCCCCCCCGGAACCGGCCCAGACGGGCGAAACGGGCACC
ATGGGCCGCTCGGTCACGTCCCAGGTGGTGATGGCGCTCCTCTTTTTCCCCAACTACCTCGTGGT
CCAGCCGCTCTTGCTCCTATGGGCGCTCGCCAAGACCGGGGCCCTGTTCTGGCGGGGCCTGGCGG
TCATCGTCAGCGATACCCCCCAAAAGACCCCCTCGCCCGAGGCAG
Found at i:38751 original size:5 final size:5
Alignment explanation
Indices: 38743--38778 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
38733 TATGGTTTAG
38743 TGGTA TGGT- TGGTA TGGT- TGGTA TGGT- TGGTA TGGT
1 TGGTA TGGTA TGGTA TGGTA TGGTA TGGTA TGGTA TGGT
38779 TTATTGGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 12 0.43
5 16 0.57
ACGTcount: A:0.11, C:0.00, G:0.44, T:0.44
Consensus pattern (5 bp):
TGGTA
Left flanking sequence: Indices 38243 -- 38742
TTCGAGCTCCAGGTGTTTACGGCCCTGGTGCAACAATATGCAGACCCGATCATCGACTGGTTGGA
GCGCGATATCTGGGCAGCCCTCGGCAAGAAACGCACGCCGGGCCCGGTGTTCACCAAGCGGTACT
ACCGCAACGACTGCACGTTCCGCAAGGGGGTCGGGTACTTGAAGGACCTCTCGCGGTTCTTTCCC
CCCGAGGAGCTCAAAAACGTCGTCATCCTAGACAATTCCCCCGTGCTGTATGCACTCCACGAGAC
CAACGCGGTGATGATCGAGGGGTGGATCAACGACCAGCACGACCGCGACTTGCTCAACTTGTTGC
CCATGCTCCGCCTGCTCAGCCACCTGATTGATGTCCGGTACATCTTGCTGTTGCGGGGGGGCGAG
AAAGTGTTTGAGTAGTATTTATTAATAGCATAACTAGAGAGTAAGGAGGGTGGTGGTGGTAGGTG
GGAGGGGTAGGTGGTGTGGTGGTTTCTTTTGGTGGTATGGTTTAG
Right flanking sequence: Indices 38779 -- 39278
TTATTGGAACAGTAAAATGGTGTGGTTGGGTGGTATTGGTATGGTTATGGTGGATGGTTTGGTGT
TGGTGTTATGTGCAGGCTGTGGTGATGGCTGCAACACGAGCCAAGTGGGTTGAAAGCTACAGTAT
CGATTGGCTTATCTCTTATTCTTTTCTTATATTCTGCGGTTGACCGTCAATTCCAACGTCAGTGA
GCTCCTACGACTCGATCATCTCCACGAACTCTCCCTGTGCACCGTTCTCCTCGACGTCTCTCTTG
TCCTGTTCGTCCTCCCACAGGCCAAAACTGGTGCACCACGCGTAGGGTTTCTCACCACAAATTCT
TTTCCCCTTCGGATAGCGGTAGCACCTAGCAAACATCGTCCCGTCGCCATTTTCCTCGAACATCT
CCCACCGGTTGTCGTCCTTGGGCCAAAAGTTGATGAATACATCACCGCCTTGCCGGAAACGTCCG
AAAACTGCCTTCTCCTCCCAGCCTTCATTCCATTCAACCTTTCCA
Found at i:38757 original size:9 final size:9
Alignment explanation
Indices: 38743--38779 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
38733 TATGGTTTAG
38743 TGGTATGGT
1 TGGTATGGT
38752 TGGTATGGT
1 TGGTATGGT
38761 TGGTATGGT
1 TGGTATGGT
38770 TGGTATGGT
1 TGGTATGGT
38779 T
1 T
38780 TATTGGAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.11, C:0.00, G:0.43, T:0.46
Consensus pattern (9 bp):
TGGTATGGT
Left flanking sequence: Indices 38243 -- 38742
TTCGAGCTCCAGGTGTTTACGGCCCTGGTGCAACAATATGCAGACCCGATCATCGACTGGTTGGA
GCGCGATATCTGGGCAGCCCTCGGCAAGAAACGCACGCCGGGCCCGGTGTTCACCAAGCGGTACT
ACCGCAACGACTGCACGTTCCGCAAGGGGGTCGGGTACTTGAAGGACCTCTCGCGGTTCTTTCCC
CCCGAGGAGCTCAAAAACGTCGTCATCCTAGACAATTCCCCCGTGCTGTATGCACTCCACGAGAC
CAACGCGGTGATGATCGAGGGGTGGATCAACGACCAGCACGACCGCGACTTGCTCAACTTGTTGC
CCATGCTCCGCCTGCTCAGCCACCTGATTGATGTCCGGTACATCTTGCTGTTGCGGGGGGGCGAG
AAAGTGTTTGAGTAGTATTTATTAATAGCATAACTAGAGAGTAAGGAGGGTGGTGGTGGTAGGTG
GGAGGGGTAGGTGGTGTGGTGGTTTCTTTTGGTGGTATGGTTTAG
Right flanking sequence: Indices 38780 -- 39279
TATTGGAACAGTAAAATGGTGTGGTTGGGTGGTATTGGTATGGTTATGGTGGATGGTTTGGTGTT
GGTGTTATGTGCAGGCTGTGGTGATGGCTGCAACACGAGCCAAGTGGGTTGAAAGCTACAGTATC
GATTGGCTTATCTCTTATTCTTTTCTTATATTCTGCGGTTGACCGTCAATTCCAACGTCAGTGAG
CTCCTACGACTCGATCATCTCCACGAACTCTCCCTGTGCACCGTTCTCCTCGACGTCTCTCTTGT
CCTGTTCGTCCTCCCACAGGCCAAAACTGGTGCACCACGCGTAGGGTTTCTCACCACAAATTCTT
TTCCCCTTCGGATAGCGGTAGCACCTAGCAAACATCGTCCCGTCGCCATTTTCCTCGAACATCTC
CCACCGGTTGTCGTCCTTGGGCCAAAAGTTGATGAATACATCACCGCCTTGCCGGAAACGTCCGA
AAACTGCCTTCTCCTCCCAGCCTTCATTCCATTCAACCTTTCCAT
Found at i:38764 original size:13 final size:13
Alignment explanation
Indices: 38730--38779 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
38720 TTTCTTTTGG
*
38730 TGGTATGGTTTAG-
1 TGGTATGG-TTGGT
38743 TGGTATGGTTGGT
1 TGGTATGGTTGGT
38756 ATGGT-TGGTATGGT
1 -TGGTATGGT-TGGT
38770 TGGTATGGTT
1 TGGTATGGTT
38780 TATTGGAACA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 17 0.53
14 12 0.38
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.46
Consensus pattern (13 bp):
TGGTATGGTTGGT
Left flanking sequence: Indices 38230 -- 38729
GATCTCCCAGTGGTTCGAGCTCCAGGTGTTTACGGCCCTGGTGCAACAATATGCAGACCCGATCA
TCGACTGGTTGGAGCGCGATATCTGGGCAGCCCTCGGCAAGAAACGCACGCCGGGCCCGGTGTTC
ACCAAGCGGTACTACCGCAACGACTGCACGTTCCGCAAGGGGGTCGGGTACTTGAAGGACCTCTC
GCGGTTCTTTCCCCCCGAGGAGCTCAAAAACGTCGTCATCCTAGACAATTCCCCCGTGCTGTATG
CACTCCACGAGACCAACGCGGTGATGATCGAGGGGTGGATCAACGACCAGCACGACCGCGACTTG
CTCAACTTGTTGCCCATGCTCCGCCTGCTCAGCCACCTGATTGATGTCCGGTACATCTTGCTGTT
GCGGGGGGGCGAGAAAGTGTTTGAGTAGTATTTATTAATAGCATAACTAGAGAGTAAGGAGGGTG
GTGGTGGTAGGTGGGAGGGGTAGGTGGTGTGGTGGTTTCTTTTGG
Right flanking sequence: Indices 38780 -- 39279
TATTGGAACAGTAAAATGGTGTGGTTGGGTGGTATTGGTATGGTTATGGTGGATGGTTTGGTGTT
GGTGTTATGTGCAGGCTGTGGTGATGGCTGCAACACGAGCCAAGTGGGTTGAAAGCTACAGTATC
GATTGGCTTATCTCTTATTCTTTTCTTATATTCTGCGGTTGACCGTCAATTCCAACGTCAGTGAG
CTCCTACGACTCGATCATCTCCACGAACTCTCCCTGTGCACCGTTCTCCTCGACGTCTCTCTTGT
CCTGTTCGTCCTCCCACAGGCCAAAACTGGTGCACCACGCGTAGGGTTTCTCACCACAAATTCTT
TTCCCCTTCGGATAGCGGTAGCACCTAGCAAACATCGTCCCGTCGCCATTTTCCTCGAACATCTC
CCACCGGTTGTCGTCCTTGGGCCAAAAGTTGATGAATACATCACCGCCTTGCCGGAAACGTCCGA
AAACTGCCTTCTCCTCCCAGCCTTCATTCCATTCAACCTTTCCAT
Found at i:40519 original size:8 final size:8
Alignment explanation
Indices: 40502--40551 Score: 91
Period size: 8 Copynumber: 6.2 Consensus size: 8
40492 GTGTAGTCTA
*
40502 GTGGTGTG
1 GTGGTATG
40510 GTGGTATG
1 GTGGTATG
40518 GTGGTATG
1 GTGGTATG
40526 GTGGTATG
1 GTGGTATG
40534 GTGGTATG
1 GTGGTATG
40542 GTGGTATG
1 GTGGTATG
40550 GT
1 GT
40552 TAGGTACGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.10, C:0.00, G:0.52, T:0.38
Consensus pattern (8 bp):
GTGGTATG
Left flanking sequence: Indices 40002 -- 40501
GAATGTTGCATGTCAATCTTCCACTCTCGTAGAATCTTTCTGGAAGCGTTGAAATACGGATCAAA
ACGTGACCCGCATACCAATCAATTAGGCGGAGCATGGGCAACGAATTGAGCAAGTCGCGAATCCT
GGTTGAAGCTAAAGAGGAAAGACAGCTTCGCTTACCCTCTTAGTGTCGACGCAGAGTTGACCGCT
GTCTATGAATGATATCGCCCTTAGTGACACATTTCGGCTTTATTGGTAGCAATGCCATTCGTACA
TTAATCTAGACCGAGAAAAACCACTAAACACAATTCGATCGGGCGTTAGGTATTACAACAAGACT
CCCCTCAAAGCACTCAACTCCTTTTGTGCCGAGACTACAGGAGTGGAAAGTGGGGCTATCTGGGG
TGATTCTTGCCGGCTCAGCCCAATACATCTTGCTGTCGGGGGCGAGAAACTGTTTGAATAGTATT
TATTATTCGTATAACTAGTGTTTAAGGTTGGTTTGGTGTAGTCTA
Right flanking sequence: Indices 40552 -- 41051
TAGGTACGGTTATGTGCAGGCTGATGTTTGGCTGCAAAATGAGCCAGGCAAGTTACACGTAGTGC
TTGGCGGTTTACTTTATAAAGATTTTCCTATATACTGCAGTTAAACAATAATTCCAACGTCATAG
AGCTCTTAGGATTCGAGCATCTCCACGATCTCTCCCTGTTCACCGTTCTCCACGTCTCTCTTTGC
CTGTTCGTCCTCCCACTTGCCAAAGAAGGTGCACCGGGCGTAGGGTTGCTCACCACAGTATTTTG
TTCCCTCTGGATAGCGGTAGCACCGTCCCACCCTCTTCCCGTCGCCGTTTTCCTCGAACAACTCC
CACCGATTGTCGTCCTTGGGCCAAAGGTTGAAGAATACATCATCGTGCAGCCGGAAACGTCCAAA
AACAGCCTTCTCCTCCCAGCCTTCATTCCATTCAATGTTTCCACTCTCCAAATCATCGCATTTCC
CACTTTTGTAGTACTCGTCAGCTTTCTCTGGGGGGCCCTTATAAA
Found at i:41870 original size:12 final size:13
Alignment explanation
Indices: 41813--41896 Score: 127
Period size: 13 Copynumber: 6.6 Consensus size: 13
41803 TTCACCCCAT
*
41813 CCCCATCACCATA
1 CCCCATCACCCTA
*
41826 CCCCATCACTCTA
1 CCCCATCACCCTA
*
41839 CCCCATCACTCTA
1 CCCCATCACCCTA
41852 CCCCATCACCCTA
1 CCCCATCACCCTA
41865 -CCCATCACCCTA
1 CCCCATCACCCTA
41877 -CCCATCACCCTA
1 CCCCATCACCCTA
41889 CCCCATCA
1 CCCCATCA
41897 ACCCATCACC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
12 24 0.36
13 43 0.64
ACGTcount: A:0.25, C:0.57, G:0.00, T:0.18
Consensus pattern (13 bp):
CCCCATCACCCTA
Left flanking sequence: Indices 41313 -- 41812
TGTGGATGTGTTGATAGGTTCCGGTCAACTCCGCTCGCCTGTGGAGAGCCCCACTTGTTTGGTCT
CCTATTGCATTGGGAAGCCTTTGGACGAAATAGGAACCGAAAGCTTATTGTGAAACCCGCAAATA
AAAACAGTCTGGGAATGATTGATCTACTAGATGTTTCATTTGAGAAACCTAAGGTTTGGGAAATT
GTCCACCCTTTCGCTTGAGCGTGTGGAGTTGTAGACTCGTTGCGTTTTCTTCCGCTTAAGAGCCT
GTTTGACCCATGTTTCAGAAAGGTATCTGCGACGCGTTGCAGAATTCTTGTGGAGAAACGTGGGA
ATACAAAGCGGGTGTACGAGATGTTGGGGCCGAGAATGTTTCGTGTCAATCTTCCACTCGTAGAG
TCCTGTCATGAAGCTTCAAAGTACGGAAAGGTGGCCGGCATACTAATCGAAATTTGGACAAAGTA
CCCCAGGTAACCACACTTTCCACTCGTATAGTCTATTCACCCCAT
Right flanking sequence: Indices 41897 -- 42396
ACCCATCACCCTTGTCTCCCCTGCCCGTAATCCCTACCAGTCCCCGGTTTTGAGCCACACTTTTC
AGTGCGGCTCACCCCACCACCACCACGCCCACCATGCCCGTGCTGCTCGATCTCGAGGAGTTGGG
CGACAGTCTACGCAATGAGGACTATCGCAACGGGCCCGAGATTGCCGCTGACCTTCCCCGGATCC
TCCAGCACCTCGCCGAGACCGTCGACACCGCCCCCATGGCTCTGCTCCGGGTGCTCGTGAACCTC
TGTGCCGACAGTGACGCCAACCGGGACGCTGTGTCGCAACACACGGCGCTCTGGAAGGCGATCGA
CCCGCTTTTGGACCCGCTGGAGCCCCTGGAGCCGCCCCAGCGCGTGGGAATCCTCTTGGCCCAGT
TCATCTACGCAGACCCGCTGCAGTCGCGGGTGTGGGTACAACGGGTGTACCACGAGCTTCCTCTG
GTGGTCCTGTTTGTGTGGGGCGTCGCTGATCTCGACGATTACGCT
Found at i:43510 original size:15 final size:15
Alignment explanation
Indices: 43451--43503 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
43441 AAAATGGAGT
43451 GAGATGAACGAAGAAGTG
1 GAGATGAACG-A-AA-TG
*
43469 GAGTACGAA-GAAATG
1 GAG-ATGAACGAAATG
43484 GAGATGAACGAAATG
1 GAGATGAACGAAATG
43499 GAGAT
1 GAGAT
43504 ATACGAAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 4 0.13
15 16 0.52
16 2 0.06
17 1 0.03
18 4 0.13
19 4 0.13
ACGTcount: A:0.45, C:0.06, G:0.36, T:0.13
Consensus pattern (15 bp):
GAGATGAACGAAATG
Left flanking sequence: Indices 42951 -- 43450
TCGGTTGTGGGCCAAGATTGCCAGCGACAACCGCCAGTACTACCCCGAGATCCTGGGCCTAGTGT
CCAAGTTCTTGCGCAAATTGATCCGGGTGGGTGGTGACGACGCGGCCCGCGAGCTTGTGGCCGTG
GTGGACGACCGCCACACCAAGTTGGCGCTTCTCGAGCAGGCGATAGCCCATGGTGGGCCCCTAGA
CTCTGCGCTCGTGGCTGACTGCTTCACTCTCGAGCCCTCGGAGACCAAGGTCGAGCTTCTCATGG
AGCAGGTCAAGGTGGCGGGGATGCTCGTGCACAAGGCTGGGTCTAGTCTCCCCCAGGAGACCTTG
CCCGGGCTCGAGCTGTTTCTTACTGCTCTCTACGAGTTTTTGCCGCTGGCCCGCGACCAGCCGGT
GTACCCGGCGATTTTGAACAACAGCAAGTTTTTGGCGGCCGCGGTGGCCCTGGTGCCGGGGATCT
CGCTGACGTTGGACCTGTTGTGTCTTGAAGTGGTGAAAATGGAGT
Right flanking sequence: Indices 43504 -- 44003
ATACGAAGAGGTGGAGATAAACGAAGAGATGGAAATAAACGAAGAAATAGAGTTAAACGAAATAT
GCCGTAGGATAGGAATCGGATGATTTTCGATACGCGTGGGAGTTCCCGTTCTCATTTGTACATCC
CTTGTTGAAAAACGTTACCAGCCGGTGGGTCAGTTTCCTGCTCGGCAGGTGGGCTAGCCTTAGTC
AGTCATAGCAGCAATCCTTATCTTTGCATCACCGCTAGACACCCAGTCAGCGTGATGGTAGGGAA
GACGTGCTATGTCCTTAGTAAAAGTACCCTGTCTCGGCTGGGGGGCCGCAAGCGGCGCCCCCCAG
ACCCCCCAACGCTTATTTGCGTCAAATGGCTGCTACAAATCTTTTTCGTGGAGGTTGCAAACGTC
ACTATCATACTAATAGCATCCTATAACAACTGTTGAAATTTTACCAGCCGGTGGGTTAGTTTTCT
GCTATGTAGGTGGGCTAGCCTTAAGCAGAGGGTCAGTTATAGTAG
Found at i:43520 original size:18 final size:18
Alignment explanation
Indices: 43473--43564 Score: 91
Period size: 18 Copynumber: 5.3 Consensus size: 18
43463 GAAGTGGAGT
* *
43473 ACGAAGAAATGGAGATGA
1 ACGAAGAGATGGAGATAA
*
43491 ACG-A-A-ATGGAGATAT
1 ACGAAGAGATGGAGATAA
*
43506 ACGAAGAGGTGGAGATAA
1 ACGAAGAGATGGAGATAA
*
43524 ACGAAGAGATGGAAATAA
1 ACGAAGAGATGGAGATAA
* * *
43542 ACGAAGAAATAGAGTTAA
1 ACGAAGAGATGGAGATAA
43560 ACGAA
1 ACGAA
43565 ATATGCCGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
15 11 0.18
16 2 0.03
17 2 0.03
18 46 0.75
ACGTcount: A:0.51, C:0.07, G:0.29, T:0.13
Consensus pattern (18 bp):
ACGAAGAGATGGAGATAA
Left flanking sequence: Indices 42973 -- 43472
AGCGACAACCGCCAGTACTACCCCGAGATCCTGGGCCTAGTGTCCAAGTTCTTGCGCAAATTGAT
CCGGGTGGGTGGTGACGACGCGGCCCGCGAGCTTGTGGCCGTGGTGGACGACCGCCACACCAAGT
TGGCGCTTCTCGAGCAGGCGATAGCCCATGGTGGGCCCCTAGACTCTGCGCTCGTGGCTGACTGC
TTCACTCTCGAGCCCTCGGAGACCAAGGTCGAGCTTCTCATGGAGCAGGTCAAGGTGGCGGGGAT
GCTCGTGCACAAGGCTGGGTCTAGTCTCCCCCAGGAGACCTTGCCCGGGCTCGAGCTGTTTCTTA
CTGCTCTCTACGAGTTTTTGCCGCTGGCCCGCGACCAGCCGGTGTACCCGGCGATTTTGAACAAC
AGCAAGTTTTTGGCGGCCGCGGTGGCCCTGGTGCCGGGGATCTCGCTGACGTTGGACCTGTTGTG
TCTTGAAGTGGTGAAAATGGAGTGAGATGAACGAAGAAGTGGAGT
Right flanking sequence: Indices 43565 -- 44064
ATATGCCGTAGGATAGGAATCGGATGATTTTCGATACGCGTGGGAGTTCCCGTTCTCATTTGTAC
ATCCCTTGTTGAAAAACGTTACCAGCCGGTGGGTCAGTTTCCTGCTCGGCAGGTGGGCTAGCCTT
AGTCAGTCATAGCAGCAATCCTTATCTTTGCATCACCGCTAGACACCCAGTCAGCGTGATGGTAG
GGAAGACGTGCTATGTCCTTAGTAAAAGTACCCTGTCTCGGCTGGGGGGCCGCAAGCGGCGCCCC
CCAGACCCCCCAACGCTTATTTGCGTCAAATGGCTGCTACAAATCTTTTTCGTGGAGGTTGCAAA
CGTCACTATCATACTAATAGCATCCTATAACAACTGTTGAAATTTTACCAGCCGGTGGGTTAGTT
TTCTGCTATGTAGGTGGGCTAGCCTTAAGCAGAGGGTCAGTTATAGTAGTAATCTGTATCTGCAC
ACTTATCAATGGATAGTCTAAAATACAAGCTATTCGCCTGATCAA
Found at i:46276 original size:11 final size:11
Alignment explanation
Indices: 46257--46299 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
46247 CGAGTAGTCC
*
46257 AAAAGAATCCG
1 AAAAAAATCCG
46268 AAAAAAATCCG
1 AAAAAAATCCG
*
46279 AAAAGAATCCG
1 AAAAAAATCCG
*
46290 AAGAAAATCC
1 AAAAAAATCC
46300 TAAATGAGTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.09
Consensus pattern (11 bp):
AAAAAAATCCG
Left flanking sequence: Indices 45757 -- 46256
TGGTGTGCCAGTCGTTCTCCAAGAACCTCGGGTTGTACGGCGAGCGCGTCGGGTGCTTGCACGTG
GTGGCAGCCTCCGAGCAGGCGGCCCAGGCGGTGGAGCTGAACCTTGTCGCCAACTTCCGGGCCGA
GTGCCTGTTTGCGCCCGCGTGGGGCGCGTACGTGGCCGCCACCGTGTTTGGCGACGCCTCGTTGG
TGCGCCAGTGGCACCTCGACGTCGCGGCCATCACTGCACGGCTTAAGGGGGTGCGTCAAACGGTT
CATGCAAAGTTGACAGCCCTCGGGACCCCTGGTGCATGGAGCCACATCACCCTGCAGAACGGGTT
GTTCTGGCACCTGGGGCTCACCGAGCCCCAGGTGCGGCGGTTGATGGACAAGCACCACGTGTACG
CCACGTTCCTGGGCCGGGTCAACGTCGCCGGGTTGAACGACGCCAACATCGACCGGTTCTGTGCC
GCGGTCGACGAGGTGTCTCGTAACGCTTAGATATACGAGTAGTCC
Right flanking sequence: Indices 46300 -- 46799
TAAATGAGTCCCATATTCCGAAATGACCGTGTATGAACTTCCTATAAATATAACCGGTAGAAAAA
TGAGGGGGTCGCTCGCGCTAGACGTAGGGAGACGGACCCCGGAGGACCTACAAGTCCTTGCGATG
GTGGATCTTTTTCAAGTGGGCCTTCAAGTTGTCCTTGCGGTTGAACCGCTTGCCGCAGTTGGGCT
CCTCGCACTGGAACGGCTTCTCCAGCAGGTGCAGCTTCAAGTGCCGCTTGACGTGCTCGGGCCGC
TGGAACCGCAGGTCGCAGATGGGGCACTTGTGCTTCTTTTTCGGGTCCACCTGCTCCAGCTTGTC
CAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCTGAAGTCGGGCGCCATGAGCGCCAGCGCCA
CCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTGCCACTGCCAGCTTCAGCTTCTTGAGCGAT
GGGGCCAGCGTCAGCCCGTGCCGCGACGCCAACAGCGACACCACC
Found at i:46285 original size:22 final size:22
Alignment explanation
Indices: 46257--46299 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
46247 CGAGTAGTCC
46257 AAAAGAATCCGAAAAAAATCCG
1 AAAAGAATCCGAAAAAAATCCG
*
46279 AAAAGAATCCGAAGAAAATCC
1 AAAAGAATCCGAAAAAAATCC
46300 TAAATGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAAGAATCCGAAAAAAATCCG
Left flanking sequence: Indices 45757 -- 46256
TGGTGTGCCAGTCGTTCTCCAAGAACCTCGGGTTGTACGGCGAGCGCGTCGGGTGCTTGCACGTG
GTGGCAGCCTCCGAGCAGGCGGCCCAGGCGGTGGAGCTGAACCTTGTCGCCAACTTCCGGGCCGA
GTGCCTGTTTGCGCCCGCGTGGGGCGCGTACGTGGCCGCCACCGTGTTTGGCGACGCCTCGTTGG
TGCGCCAGTGGCACCTCGACGTCGCGGCCATCACTGCACGGCTTAAGGGGGTGCGTCAAACGGTT
CATGCAAAGTTGACAGCCCTCGGGACCCCTGGTGCATGGAGCCACATCACCCTGCAGAACGGGTT
GTTCTGGCACCTGGGGCTCACCGAGCCCCAGGTGCGGCGGTTGATGGACAAGCACCACGTGTACG
CCACGTTCCTGGGCCGGGTCAACGTCGCCGGGTTGAACGACGCCAACATCGACCGGTTCTGTGCC
GCGGTCGACGAGGTGTCTCGTAACGCTTAGATATACGAGTAGTCC
Right flanking sequence: Indices 46300 -- 46799
TAAATGAGTCCCATATTCCGAAATGACCGTGTATGAACTTCCTATAAATATAACCGGTAGAAAAA
TGAGGGGGTCGCTCGCGCTAGACGTAGGGAGACGGACCCCGGAGGACCTACAAGTCCTTGCGATG
GTGGATCTTTTTCAAGTGGGCCTTCAAGTTGTCCTTGCGGTTGAACCGCTTGCCGCAGTTGGGCT
CCTCGCACTGGAACGGCTTCTCCAGCAGGTGCAGCTTCAAGTGCCGCTTGACGTGCTCGGGCCGC
TGGAACCGCAGGTCGCAGATGGGGCACTTGTGCTTCTTTTTCGGGTCCACCTGCTCCAGCTTGTC
CAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCTGAAGTCGGGCGCCATGAGCGCCAGCGCCA
CCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTGCCACTGCCAGCTTCAGCTTCTTGAGCGAT
GGGGCCAGCGTCAGCCCGTGCCGCGACGCCAACAGCGACACCACC
Found at i:47115 original size:18 final size:19
Alignment explanation
Indices: 47092--47150 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 19
47082 GGTGCTGAGT
47092 TCTGCACA-AGCCCGGTGC
1 TCTGCACACAGCCCGGTGC
47110 TCTGCACAAGCAGCCCGGTGC
1 TCTGCAC-A-CAGCCCGGTGC
47131 TC-GCA-AGCAGCCCGGTGC
1 TCTGCACA-CAGCCCGGTGC
47149 TC
1 TC
47151 ACAAGCGGCC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
18 22 0.58
19 1 0.03
20 3 0.08
21 12 0.32
ACGTcount: A:0.17, C:0.39, G:0.29, T:0.15
Consensus pattern (19 bp):
TCTGCACACAGCCCGGTGC
Left flanking sequence: Indices 46592 -- 47091
CTTCTTTTTCGGGTCCACCTGCTCCAGCTTGTCCAGCCGGTTCAGCTTGACCACGGGGATGTCCA
CGCTGAAGTCGGGCGCCATGAGCGCCAGCGCCACCAGCTTGGGCATGTCGGTGGTGTCCATGGCG
AGTGCCACTGCCAGCTTCAGCTTCTTGAGCGATGGGGCCAGCGTCAGCCCGTGCCGCGACGCCAA
CAGCGACACCACCAGCGGGGTCAGGCCCTGGCGCAGCAGCCCCAGCCGCGAGCGCGCGGTCAACG
GGGCCATCGCCCCGAGCTCGTCGGGAGCCTCCGGGTAGGCGTCCTGGTACACCTGGTGGTAGCGT
TGGTACCCGGGCTCATACCCCAGGGGAGCGAACCCCAGCGCCAACTGCTGGCGCGGGTAGGGCTC
GGGGCCGAAGTTGGGCGGCGTCACCTCGCGGAGGTACTGGCGCTGCTCCTCGTACTCCTGGATGG
GGGGGAACGCCTCGTACTGGGCGCCCGAGCCCGCGGGTGCTGAGT
Right flanking sequence: Indices 47151 -- 47650
ACAAGCGGCCCGGTGCTCACACCTTGGCCACCCAGAGCCATTCCAGACGCCATTGCCAGGCCAGC
GGTCCCGTTCAAGCTCTGGTTGCTGCCCGGCACCACAAACTGGCCGCCGTAGGGCGCGCCCAGAG
GCCCCAGCGCCGCCTGGTGCAACGACGAGAAGCTCAGGCTCATCAGCAGCGCCAGCGAGTTGGCG
GTGCTAAAGGTGGCCATGGGCGGCAAGAGCTCGGTCAACTCGCCGTCGCCCTCGAACTCAAACTG
CCCGAGAAGGTCCACCGGCGGCTTGCGAGCCCGCGCAGCCTGCTGCTGGTGCGCGGCCTGCTGCT
GGGCATGTGCCATCACCTGGTGGTGCACCTGGGACGCCTGGTCGAAGTGGATGGGCGAGTTGTCG
GCAAAGAACCCGGGGGTCAGCACTGCCAGGAAGTCGTCGGGCTGGTGCACCACCTGGGGCCGTGC
CTTGGTGAACAGCGAGTACGACTTGGCCTTTTTGAGCTGTTTGAA
Found at i:47155 original size:18 final size:18
Alignment explanation
Indices: 47100--47171 Score: 99
Period size: 18 Copynumber: 3.8 Consensus size: 18
47090 GTTCTGCACA
47100 AGCCCGGTGCTCTGCACAAGC
1 AGCCCGGTG--CT-CACAAGC
*
47121 AGCCCGGTGCTCGCAAGC
1 AGCCCGGTGCTCACAAGC
47139 AGCCCGGTGCTCACAAGC
1 AGCCCGGTGCTCACAAGC
*
47157 GGCCCGGTGCTCACA
1 AGCCCGGTGCTCACA
47172 CCTTGGCCAC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
18 37 0.77
19 2 0.04
21 9 0.19
ACGTcount: A:0.18, C:0.39, G:0.31, T:0.12
Consensus pattern (18 bp):
AGCCCGGTGCTCACAAGC
Left flanking sequence: Indices 46600 -- 47099
TCGGGTCCACCTGCTCCAGCTTGTCCAGCCGGTTCAGCTTGACCACGGGGATGTCCACGCTGAAG
TCGGGCGCCATGAGCGCCAGCGCCACCAGCTTGGGCATGTCGGTGGTGTCCATGGCGAGTGCCAC
TGCCAGCTTCAGCTTCTTGAGCGATGGGGCCAGCGTCAGCCCGTGCCGCGACGCCAACAGCGACA
CCACCAGCGGGGTCAGGCCCTGGCGCAGCAGCCCCAGCCGCGAGCGCGCGGTCAACGGGGCCATC
GCCCCGAGCTCGTCGGGAGCCTCCGGGTAGGCGTCCTGGTACACCTGGTGGTAGCGTTGGTACCC
GGGCTCATACCCCAGGGGAGCGAACCCCAGCGCCAACTGCTGGCGCGGGTAGGGCTCGGGGCCGA
AGTTGGGCGGCGTCACCTCGCGGAGGTACTGGCGCTGCTCCTCGTACTCCTGGATGGGGGGGAAC
GCCTCGTACTGGGCGCCCGAGCCCGCGGGTGCTGAGTTCTGCACA
Right flanking sequence: Indices 47172 -- 47671
CCTTGGCCACCCAGAGCCATTCCAGACGCCATTGCCAGGCCAGCGGTCCCGTTCAAGCTCTGGTT
GCTGCCCGGCACCACAAACTGGCCGCCGTAGGGCGCGCCCAGAGGCCCCAGCGCCGCCTGGTGCA
ACGACGAGAAGCTCAGGCTCATCAGCAGCGCCAGCGAGTTGGCGGTGCTAAAGGTGGCCATGGGC
GGCAAGAGCTCGGTCAACTCGCCGTCGCCCTCGAACTCAAACTGCCCGAGAAGGTCCACCGGCGG
CTTGCGAGCCCGCGCAGCCTGCTGCTGGTGCGCGGCCTGCTGCTGGGCATGTGCCATCACCTGGT
GGTGCACCTGGGACGCCTGGTCGAAGTGGATGGGCGAGTTGTCGGCAAAGAACCCGGGGGTCAGC
ACTGCCAGGAAGTCGTCGGGCTGGTGCACCACCTGGGGCCGTGCCTTGGTGAACAGCGAGTACGA
CTTGGCCTTTTTGAGCTGTTTGAACGCGTCGTCGTCCTGGTCCTC
Found at i:47469 original size:18 final size:18
Alignment explanation
Indices: 47443--47477 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
47433 TTGCGAGCCC
47443 GCGCAGCCTGCTGCTGGT
1 GCGCAGCCTGCTGCTGGT
*
47461 GCGCGGCCTGCTGCTGG
1 GCGCAGCCTGCTGCTGG
47478 GCATGTGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.34, G:0.43, T:0.20
Consensus pattern (18 bp):
GCGCAGCCTGCTGCTGGT
Left flanking sequence: Indices 46943 -- 47442
AGCGAACCCCAGCGCCAACTGCTGGCGCGGGTAGGGCTCGGGGCCGAAGTTGGGCGGCGTCACCT
CGCGGAGGTACTGGCGCTGCTCCTCGTACTCCTGGATGGGGGGGAACGCCTCGTACTGGGCGCCC
GAGCCCGCGGGTGCTGAGTTCTGCACAAGCCCGGTGCTCTGCACAAGCAGCCCGGTGCTCGCAAG
CAGCCCGGTGCTCACAAGCGGCCCGGTGCTCACACCTTGGCCACCCAGAGCCATTCCAGACGCCA
TTGCCAGGCCAGCGGTCCCGTTCAAGCTCTGGTTGCTGCCCGGCACCACAAACTGGCCGCCGTAG
GGCGCGCCCAGAGGCCCCAGCGCCGCCTGGTGCAACGACGAGAAGCTCAGGCTCATCAGCAGCGC
CAGCGAGTTGGCGGTGCTAAAGGTGGCCATGGGCGGCAAGAGCTCGGTCAACTCGCCGTCGCCCT
CGAACTCAAACTGCCCGAGAAGGTCCACCGGCGGCTTGCGAGCCC
Right flanking sequence: Indices 47478 -- 47977
GCATGTGCCATCACCTGGTGGTGCACCTGGGACGCCTGGTCGAAGTGGATGGGCGAGTTGTCGGC
AAAGAACCCGGGGGTCAGCACTGCCAGGAAGTCGTCGGGCTGGTGCACCACCTGGGGCCGTGCCT
TGGTGAACAGCGAGTACGACTTGGCCTTTTTGAGCTGTTTGAACGCGTCGTCGTCCTGGTCCTCG
ATCTTGATCAGCTCAAGCGTGTCGGCTCGGTTCAACGCGTAGGGCGTGGTCTTGGCCAGGAACGC
CAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGGGAGCGGGGTGACGTCGTCGTAGCCTG
CGGGCACCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCACCAGCGGCATCAACGGGGTGGTGATG
GTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGCTGGTGGTGCGGTTGCTTGGTGACCTT
GGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGTGGCGGT
Found at i:48251 original size:9 final size:9
Alignment explanation
Indices: 48237--48265 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
48227 GGAGCCGTGC
48237 TGGGAGCCG
1 TGGGAGCCG
48246 TGGGAGCCG
1 TGGGAGCCG
48255 TGGGAGCCG
1 TGGGAGCCG
48264 TG
1 TG
48266 CTGGCTGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.21, G:0.55, T:0.14
Consensus pattern (9 bp):
TGGGAGCCG
Left flanking sequence: Indices 47737 -- 48236
CCAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGGGAGCGGGGTGACGTCGTCGTAGCCT
GCGGGCACCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCACCAGCGGCATCAACGGGGTGGTGAT
GGTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGCTGGTGGTGCGGTTGCTTGGTGACCT
TGGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGTGGCGGTCGGGGTCTGGGTCTGGTGC
GACAGCACCAGCTTGCGCTGGGGTCTTCTGGGTGTCACCAGCGGTTGCGACGGTGCTGGTTCCAA
CAGCAGGAACAGGGTGTTGAGCAGCAGGGCCGGGGTGGCCTGTTCCAAGTCCATGTGGTCCGGGT
GGGCGGGTGCGCCCGGGTGCTGTGCCGGTGCACCGGGCACCGGGGCAGGGAGGTGGGCCTGGTAG
TAGGGGTAGTTGGCGGGGGGGCCCAGGTGGCTGTGGGAGCCGTGC
Right flanking sequence: Indices 48266 -- 48765
CTGGCTGCCCAGGTGGTTGTGGTGGCCGTGCTGGGTGGCCAGGTGGCTGTGGTGGCCGTGCTGGG
TGCCCAGCAGGCTGGTGTGGTACTGCGACGGGAACGGCTCCATGTGCAGCGGGGCCTCCATGAGG
TGCTGCGGGGCCAGCGCTAGCACCTGGGGGCCCATGTGGACCATCAGTGCGTCCGGGTGCAGGTC
GGCAAACAGGGCAAACAGAGTGTCGTCGGTGGGAAAGAGATCGAAGTCAAGGTCGTCCCCGTCGA
AACGGAGGGTGGGCGAACTCATCCGCGCAAGACCGGGCGAGCTAGGGGTTTGCAGGGAGCGACCG
GGCCTGGACAGAAGGGCAATGCACGGGGGTACGGGGCGCGAGAGGTGCGGAGGTGCCAACGAGGT
GCTGTTTCACAAACAGGACGTGCGGTGCCAGACGGGGGCTGATCAACGGTGGTGAAAAACTGGGT
TGTGCACAGGTTGGTGGAGAAAAAAATATGAGTTGTGTTCAGGAA
Found at i:48344 original size:30 final size:30
Alignment explanation
Indices: 48212--48337 Score: 141
Period size: 30 Copynumber: 4.2 Consensus size: 30
48202 TGGCGGGGGG
*
48212 GCCCAGGTGGCTGTGG-GAGCCGTGCTGGGA
1 GCCCAGGTGGCTGTGGTG-GCCGTGCTGGGT
** * *
48242 GCCGTGG-GAGCCGTGG-GAGCCGTGCTGGCT
1 GCCCAGGTG-GCTGTGGTG-GCCGTGCTGGGT
*
48272 GCCCAGGTGGTTGTGGTGGCCGTGCTGGGT
1 GCCCAGGTGGCTGTGGTGGCCGTGCTGGGT
*
48302 GGCCAGGTGGCTGTGGTGGCCGTGCTGGGT
1 GCCCAGGTGGCTGTGGTGGCCGTGCTGGGT
48332 GCCCAG
1 GCCCAG
48338 CAGGCTGGTG
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
29 1 0.01
30 77 0.96
31 2 0.03
ACGTcount: A:0.06, C:0.24, G:0.50, T:0.20
Consensus pattern (30 bp):
GCCCAGGTGGCTGTGGTGGCCGTGCTGGGT
Left flanking sequence: Indices 47712 -- 48211
TAGGGCGTGGTCTTGGCCAGGAACGCCAACGGCGGAGCACAGTTGAGGTTCAGCGTGGGCGTCGG
GAGCGGGGTGACGTCGTCGTAGCCTGCGGGCACCGTCAGGGCCAGGCCCAGCGGCGAGAACGGCA
CCAGCGGCATCAACGGGGTGGTGATGGTGGTGTTGAGGTCCACCAGGATCCGCAGCCGCAGCCGC
TGGTGGTGCGGTTGCTTGGTGACCTTGGCAGCGTTGGCCAAGTTGACGGGCAGCACCCGCATGGT
GGCGGTCGGGGTCTGGGTCTGGTGCGACAGCACCAGCTTGCGCTGGGGTCTTCTGGGTGTCACCA
GCGGTTGCGACGGTGCTGGTTCCAACAGCAGGAACAGGGTGTTGAGCAGCAGGGCCGGGGTGGCC
TGTTCCAAGTCCATGTGGTCCGGGTGGGCGGGTGCGCCCGGGTGCTGTGCCGGTGCACCGGGCAC
CGGGGCAGGGAGGTGGGCCTGGTAGTAGGGGTAGTTGGCGGGGGG
Right flanking sequence: Indices 48338 -- 48837
CAGGCTGGTGTGGTACTGCGACGGGAACGGCTCCATGTGCAGCGGGGCCTCCATGAGGTGCTGCG
GGGCCAGCGCTAGCACCTGGGGGCCCATGTGGACCATCAGTGCGTCCGGGTGCAGGTCGGCAAAC
AGGGCAAACAGAGTGTCGTCGGTGGGAAAGAGATCGAAGTCAAGGTCGTCCCCGTCGAAACGGAG
GGTGGGCGAACTCATCCGCGCAAGACCGGGCGAGCTAGGGGTTTGCAGGGAGCGACCGGGCCTGG
ACAGAAGGGCAATGCACGGGGGTACGGGGCGCGAGAGGTGCGGAGGTGCCAACGAGGTGCTGTTT
CACAAACAGGACGTGCGGTGCCAGACGGGGGCTGATCAACGGTGGTGAAAAACTGGGTTGTGCAC
AGGTTGGTGGAGAAAAAAATATGAGTTGTGTTCAGGAAAGTGCCGGACGGGGACAAAGCTGGCGG
CACAGCGCCGGTGGAAGCGGTGGGGTGGGGGCTACGGGTCTCTAC
Found at i:50345 original size:18 final size:18
Alignment explanation
Indices: 50318--50372 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
50308 GTGAGAGCAG
*
50318 GTGGAGGAGAGGTGGTGT
1 GTGGACGAGAGGTGGTGT
50336 GTGGACGAGAGGTGG-GT
1 GTGGACGAGAGGTGGTGT
* *
50353 GGGGGACGAGAGGTGTTGT
1 -GTGGACGAGAGGTGGTGT
50372 G
1 G
50373 GTGTAGTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.16, C:0.04, G:0.60, T:0.20
Consensus pattern (18 bp):
GTGGACGAGAGGTGGTGT
Left flanking sequence: Indices 49818 -- 50317
TTGTTCATTGGCAAGCGGCCCGCGGTGGTTGCGCCAGCCCAAGCCTCGACGCTAAACCCCGGCCC
ACGGATCACGGTGGTAACCCCGCGTAACTCCGGAGAACACCCGCTCCACGCGACCCCGACAATGG
TGGGGGCCCCCCGTTACGAGCGTGGGGGGTCCTTGGGGACGGATCAGGAAAGAGTTCCCCCGTAG
ATCGACGATAGAACCTGGGGTTGCCGAGGATGTCGCCCCATCGGGCGAGAGATAGCGCGATGTGC
GAGAGACACGGAGCGGGAGACACCTGGCCGACACGCGTTTGTACAATGGGTGAGAGGGAGCCGTG
GGGTTTGTGCGCGGATGGTGCGGGCGGTGTGCGGGTGGTGTGCGGTGGAGTGCGGTGCGTGGGTC
AACGGCAGTTTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTGTGGTGGTATTGCCTAATGG
GGTTTAAGTGGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAG
Right flanking sequence: Indices 50373 -- 50872
GTGTAGTGGTGATGTAGTGGTGGTCTAGTTGTGTAGTGGTCTAGTGGTTAGGGGTCTAGTGGTCT
AGTGGTCTAGTGGTCTAGTGAGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGTG
GAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGCT
GGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGT
TCCTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAA
AGGCGTGGGACAATGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAACAT
GGCTTCCTACAAACAATGGTGGCTTGGTTGTCGTCTGGGTAGCTGGTTGACACGACCGTCGAGTC
GAGCTAGGATAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCC
Found at i:50381 original size:8 final size:8
Alignment explanation
Indices: 50364--50476 Score: 74
Period size: 8 Copynumber: 14.5 Consensus size: 8
50354 GGGGACGAGA
*
50364 GGTGTTGT
1 GGTGTAGT
50372 GGTGTAGT
1 GGTGTAGT
50380 GGTG-A-T
1 GGTGTAGT
*
50386 -GTAGTGGT
1 GGT-GTAGT
*
50394 GGTCTAGT
1 GGTGTAGT
*
50402 TGTGTAGT
1 GGTGTAGT
*
50410 GGTCTAGT
1 GGTGTAGT
*
50418 GGT-TAGG
1 GGTGTAGT
*
50425 GGTCTAGT
1 GGTGTAGT
*
50433 GGTCTAGT
1 GGTGTAGT
*
50441 GGTCTAGT
1 GGTGTAGT
*
50449 GGTCTAGT
1 GGTGTAGT
*
50457 GAGTGTA-A
1 G-GTGTAGT
50465 GGTGTAGT
1 GGTGTAGT
50473 GGTG
1 GGTG
50477 GTGTGTGGTG
Statistics
Matches: 85, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 12 0.14
8 63 0.74
9 6 0.07
ACGTcount: A:0.13, C:0.05, G:0.44, T:0.37
Consensus pattern (8 bp):
GGTGTAGT
Left flanking sequence: Indices 49864 -- 50363
CGACGCTAAACCCCGGCCCACGGATCACGGTGGTAACCCCGCGTAACTCCGGAGAACACCCGCTC
CACGCGACCCCGACAATGGTGGGGGCCCCCCGTTACGAGCGTGGGGGGTCCTTGGGGACGGATCA
GGAAAGAGTTCCCCCGTAGATCGACGATAGAACCTGGGGTTGCCGAGGATGTCGCCCCATCGGGC
GAGAGATAGCGCGATGTGCGAGAGACACGGAGCGGGAGACACCTGGCCGACACGCGTTTGTACAA
TGGGTGAGAGGGAGCCGTGGGGTTTGTGCGCGGATGGTGCGGGCGGTGTGCGGGTGGTGTGCGGT
GGAGTGCGGTGCGTGGGTCAACGGCAGTTTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTG
TGGTGGTATTGCCTAATGGGGTTTAAGTGGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAGG
TGGAGGAGAGGTGGTGTGTGGACGAGAGGTGGGTGGGGGACGAGA
Right flanking sequence: Indices 50477 -- 50976
GTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACT
GATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTC
CTATTGTGTTCTCGGACACCTATTGTTCCTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGC
CTGTGAAGATGGCTGATGCGACAGAAAGGCGTGGGACAATGGCCTCAGCCTGGCCTCAGCCAGAG
GTTTTTGGGGACAATGGCCTCAACATGGCTTCCTACAAACAATGGTGGCTTGGTTGTCGTCTGGG
TAGCTGGTTGACACGACCGTCGAGTCGAGCTAGGATAGCCATTCGCGACCGAGTCGAGCTAAGAT
AGCGCCATTGCGACCGTATTTAGTCGAATTAGCTCGTGTGTCGAGTCAAAGGACTCGTTTCCACC
TGCTGGGCTCTCCACCTGCTGGGCTCTCCACCTGCTGGCTCCCCA
Found at i:50413 original size:16 final size:15
Alignment explanation
Indices: 50392--50457 Score: 87
Period size: 16 Copynumber: 4.2 Consensus size: 15
50382 TGATGTAGTG
*
50392 GTGGTCTAGTTGTGTA
1 GTGGTCTAGTGGT-TA
50408 GTGGTCTAGTGGTTA
1 GTGGTCTAGTGGTTA
*
50423 GGGGTCTAGTGGTCTA
1 GTGGTCTAGTGGT-TA
50439 GTGGTCTAGTGGTCTA
1 GTGGTCTAGTGGT-TA
50455 GTG
1 GTG
50458 AGTGTAAGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
15 14 0.30
16 32 0.70
ACGTcount: A:0.12, C:0.09, G:0.41, T:0.38
Consensus pattern (15 bp):
GTGGTCTAGTGGTTA
Left flanking sequence: Indices 49892 -- 50391
GGTGGTAACCCCGCGTAACTCCGGAGAACACCCGCTCCACGCGACCCCGACAATGGTGGGGGCCC
CCCGTTACGAGCGTGGGGGGTCCTTGGGGACGGATCAGGAAAGAGTTCCCCCGTAGATCGACGAT
AGAACCTGGGGTTGCCGAGGATGTCGCCCCATCGGGCGAGAGATAGCGCGATGTGCGAGAGACAC
GGAGCGGGAGACACCTGGCCGACACGCGTTTGTACAATGGGTGAGAGGGAGCCGTGGGGTTTGTG
CGCGGATGGTGCGGGCGGTGTGCGGGTGGTGTGCGGTGGAGTGCGGTGCGTGGGTCAACGGCAGT
TTGTGCACTCGGTGTGTCCGGTGTCTTCACATGGGTGTGGTGGTATTGCCTAATGGGGTTTAAGT
GGTATTGTTGATGTAAGGGCTTTAGGGTGAGAGCAGGTGGAGGAGAGGTGGTGTGTGGACGAGAG
GTGGGTGGGGGACGAGAGGTGTTGTGGTGTAGTGGTGATGTAGTG
Right flanking sequence: Indices 50458 -- 50957
AGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGTAGCTGT
TCGTGGAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACCGACGCG
TCCGCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGTTCCTATTGTGTCAGGTTATC
GACCCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCGTGGGACAATGGCCTC
AGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAACATGGCTTCCTACAAACAATGGT
GGCTTGGTTGTCGTCTGGGTAGCTGGTTGACACGACCGTCGAGTCGAGCTAGGATAGCCATTCGC
GACCGAGTCGAGCTAAGATAGCGCCATTGCGACCGTATTTAGTCGAATTAGCTCGTGTGTCGAGT
CAAAGGACTCGTTTCCACCTGCTGGGCTCTCCACCTGCTGGGCTC
Found at i:50856 original size:29 final size:29
Alignment explanation
Indices: 50822--50882 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
50812 ACACGACCGT
*
50822 CGAGTCGAGCTAGGATA-GCCATTCGCGAC
1 CGAGTCGAGCTAAGATACGCCATT-GCGAC
50851 CGAGTCGAGCTAAGATAGCGCCATTGCGAC
1 CGAGTCGAGCTAAGATA-CGCCATTGCGAC
50881 CG
1 CG
50883 TATTTAGTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 16 0.55
30 7 0.24
31 6 0.21
ACGTcount: A:0.25, C:0.28, G:0.31, T:0.16
Consensus pattern (29 bp):
CGAGTCGAGCTAAGATACGCCATTGCGAC
Left flanking sequence: Indices 50322 -- 50821
AGGAGAGGTGGTGTGTGGACGAGAGGTGGGTGGGGGACGAGAGGTGTTGTGGTGTAGTGGTGATG
TAGTGGTGGTCTAGTTGTGTAGTGGTCTAGTGGTTAGGGGTCTAGTGGTCTAGTGGTCTAGTGGT
CTAGTGAGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATTAGCATTATCGTGGAGTCTGGTGGAGT
AGCTGTTCGTGGAGTCTGTCTGACTGATCTCTCATTGCTACACTGCGTGCTGGCGACACTGGACC
GACGCGTCCGCCCTCGACAATTGTCCTATTGTGTTCTCGGACACCTATTGTTCCTATTGTGTCAG
GTTATCGACCCCAGAGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCGTGGGACAAT
GGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAACATGGCTTCCTACAAAC
AATGGTGGCTTGGTTGTCGTCTGGGTAGCTGGTTGACACGACCGT
Right flanking sequence: Indices 50883 -- 51382
TATTTAGTCGAATTAGCTCGTGTGTCGAGTCAAAGGACTCGTTTCCACCTGCTGGGCTCTCCACC
TGCTGGGCTCTCCACCTGCTGGCTCCCCACCTGCTGGCTCTCCATTTCCATGGTCGTCCACCTGA
TAGGCTCACCATTGCCGTCGTCTCGTTTCCACCTGATGGACGAGCCAATGCCATGATCTCGTTCA
CCTACGGGGCTCCCCGTATCCATGGTTTCGTTCCCAAGCCTCGCTCTCCATTTCCATGGTCTCAT
TCTGAAGACTCTCTCTCCATTGCCATCGTCTCGTTCACCAGATAGACTCTCCATTCCATGGTCTG
TTCACCTGCTGGCTCCATTTCCATAATCTCGTTCACCTGGGCTTTCCGTCTCTATGGTCTCGTCC
ACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTCTCTTATATACATTAAATCGTT
ACCTAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGGATGTTC
Found at i:50977 original size:15 final size:16
Alignment explanation
Indices: 50926--50991 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
50916 AGGACTCGTT
50926 TCCACCTGCTGGGCTC
1 TCCACCTGCTGGGCTC
50942 TCCACCTGCTGGGCTC
1 TCCACCTGCTGGGCTC
50958 TCCACCTGCT-GGCTC
1 TCCACCTGCTGGGCTC
*
50973 CCCACCTGCT-GGCTC
1 TCCACCTGCTGGGCTC
50988 TCCA
1 TCCA
50992 TTTCCATGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
15 22 0.46
16 26 0.54
ACGTcount: A:0.08, C:0.47, G:0.21, T:0.24
Consensus pattern (16 bp):
TCCACCTGCTGGGCTC
Left flanking sequence: Indices 50426 -- 50925
GTCTAGTGGTCTAGTGGTCTAGTGGTCTAGTGAGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATT
AGCATTATCGTGGAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACTGATCTCTCATTGCT
ACACTGCGTGCTGGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTCCTATTGTGTTCTCG
GACACCTATTGTTCCTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGCCTGTGAAGATGGCT
GATGCGACAGAAAGGCGTGGGACAATGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAA
TGGCCTCAACATGGCTTCCTACAAACAATGGTGGCTTGGTTGTCGTCTGGGTAGCTGGTTGACAC
GACCGTCGAGTCGAGCTAGGATAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGAC
CGTATTTAGTCGAATTAGCTCGTGTGTCGAGTCAAAGGACTCGTT
Right flanking sequence: Indices 50992 -- 51491
TTTCCATGGTCGTCCACCTGATAGGCTCACCATTGCCGTCGTCTCGTTTCCACCTGATGGACGAG
CCAATGCCATGATCTCGTTCACCTACGGGGCTCCCCGTATCCATGGTTTCGTTCCCAAGCCTCGC
TCTCCATTTCCATGGTCTCATTCTGAAGACTCTCTCTCCATTGCCATCGTCTCGTTCACCAGATA
GACTCTCCATTCCATGGTCTGTTCACCTGCTGGCTCCATTTCCATAATCTCGTTCACCTGGGCTT
TCCGTCTCTATGGTCTCGTCCACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTC
TCTTATATACATTAAATCGTTACCTAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGGATGTT
CTTGATCAAGGTCTCCTTGGCGGTCTTGACCATCTCCTCCTCGTAGTCAGCCAACTCACCCAAGC
CGTGGATCTTGGCAACACCCTGGGGGCCCAAGGTCACCTTGGAAG
Found at i:50978 original size:31 final size:31
Alignment explanation
Indices: 50926--50991 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 31
50916 AGGACTCGTT
*
50926 TCCACCTGCTGGGCTCTCCACCTGCTGGGCTC
1 TCCACCTGCTGGGCTCCCCACCTGCT-GGCTC
50958 TCCACCTGCT-GGCTCCCCACCTGCTGGCTC
1 TCCACCTGCTGGGCTCCCCACCTGCTGGCTC
50988 TCCA
1 TCCA
50992 TTTCCATGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 9 0.27
31 14 0.42
32 10 0.30
ACGTcount: A:0.08, C:0.47, G:0.21, T:0.24
Consensus pattern (31 bp):
TCCACCTGCTGGGCTCCCCACCTGCTGGCTC
Left flanking sequence: Indices 50426 -- 50925
GTCTAGTGGTCTAGTGGTCTAGTGGTCTAGTGAGTGTAAGGTGTAGTGGTGGTGTGTGGTGGATT
AGCATTATCGTGGAGTCTGGTGGAGTAGCTGTTCGTGGAGTCTGTCTGACTGATCTCTCATTGCT
ACACTGCGTGCTGGCGACACTGGACCGACGCGTCCGCCCTCGACAATTGTCCTATTGTGTTCTCG
GACACCTATTGTTCCTATTGTGTCAGGTTATCGACCCCAGAGAACGATGGCCTGTGAAGATGGCT
GATGCGACAGAAAGGCGTGGGACAATGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAA
TGGCCTCAACATGGCTTCCTACAAACAATGGTGGCTTGGTTGTCGTCTGGGTAGCTGGTTGACAC
GACCGTCGAGTCGAGCTAGGATAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGAC
CGTATTTAGTCGAATTAGCTCGTGTGTCGAGTCAAAGGACTCGTT
Right flanking sequence: Indices 50992 -- 51491
TTTCCATGGTCGTCCACCTGATAGGCTCACCATTGCCGTCGTCTCGTTTCCACCTGATGGACGAG
CCAATGCCATGATCTCGTTCACCTACGGGGCTCCCCGTATCCATGGTTTCGTTCCCAAGCCTCGC
TCTCCATTTCCATGGTCTCATTCTGAAGACTCTCTCTCCATTGCCATCGTCTCGTTCACCAGATA
GACTCTCCATTCCATGGTCTGTTCACCTGCTGGCTCCATTTCCATAATCTCGTTCACCTGGGCTT
TCCGTCTCTATGGTCTCGTCCACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTC
TCTTATATACATTAAATCGTTACCTAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGGATGTT
CTTGATCAAGGTCTCCTTGGCGGTCTTGACCATCTCCTCCTCGTAGTCAGCCAACTCACCCAAGC
CGTGGATCTTGGCAACACCCTGGGGGCCCAAGGTCACCTTGGAAG
Found at i:51134 original size:34 final size:34
Alignment explanation
Indices: 51096--51210 Score: 103
Period size: 34 Copynumber: 3.4 Consensus size: 34
51086 GCTCCCCGTA
* *
51096 TCCATGGTTTCGTTCCCAAGCCTCGCTCTCCATT
1 TCCATGGTCTCGTTCCCAAGACTCGCTCTCCATT
* ** *
51130 TCCATGGTCTCATTCTGAAGACTCTCTCTCCATT
1 TCCATGGTCTCGTTCCCAAGACTCGCTCTCCATT
* * *
51164 GCCATCGTCTCGTTCACC-AGA-TAGACTCTCCA-T
1 TCCATGGTCTCGTTC-CCAAGACTCG-CTCTCCATT
51197 TCCATGGTCT-GTTC
1 TCCATGGTCTCGTTC
51211 ACCTGCTGGC
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
32 4 0.06
33 10 0.16
34 50 0.78
ACGTcount: A:0.16, C:0.35, G:0.15, T:0.35
Consensus pattern (34 bp):
TCCATGGTCTCGTTCCCAAGACTCGCTCTCCATT
Left flanking sequence: Indices 50596 -- 51095
CGACAATTGTCCTATTGTGTTCTCGGACACCTATTGTTCCTATTGTGTCAGGTTATCGACCCCAG
AGAACGATGGCCTGTGAAGATGGCTGATGCGACAGAAAGGCGTGGGACAATGGCCTCAGCCTGGC
CTCAGCCAGAGGTTTTTGGGGACAATGGCCTCAACATGGCTTCCTACAAACAATGGTGGCTTGGT
TGTCGTCTGGGTAGCTGGTTGACACGACCGTCGAGTCGAGCTAGGATAGCCATTCGCGACCGAGT
CGAGCTAAGATAGCGCCATTGCGACCGTATTTAGTCGAATTAGCTCGTGTGTCGAGTCAAAGGAC
TCGTTTCCACCTGCTGGGCTCTCCACCTGCTGGGCTCTCCACCTGCTGGCTCCCCACCTGCTGGC
TCTCCATTTCCATGGTCGTCCACCTGATAGGCTCACCATTGCCGTCGTCTCGTTTCCACCTGATG
GACGAGCCAATGCCATGATCTCGTTCACCTACGGGGCTCCCCGTA
Right flanking sequence: Indices 51211 -- 51710
ACCTGCTGGCTCCATTTCCATAATCTCGTTCACCTGGGCTTTCCGTCTCTATGGTCTCGTCCACC
TCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGTCTCTTATATACATTAAATCGTTACC
TAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGGATGTTCTTGATCAAGGTCTCCTTGGCGGT
CTTGACCATCTCCTCCTCGTAGTCAGCCAACTCACCCAAGCCGTGGATCTTGGCAACACCCTGGG
GGCCCAAGGTCACCTTGGAAGAGAAGAAGTCGACACCCTCGGACTTGAACAAGGGCGAGTCCACG
AAAGTGGGCTCGATCACGTCCTGCTCACCAGCCAAACCGTCCAAAACGGCACCGGCCATGCGGGC
ACCGGCCTGGGCCATCGACAAAGTGGCGGAACCAGCACCGTCCTTGGCCTTGACGACCTCGTCAC
CACCAAACTGGATGCGGTGGATAAGCGCGTCACGCTTGTCCTGGG
Found at i:51250 original size:29 final size:28
Alignment explanation
Indices: 51191--51250 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
51181 CAGATAGACT
**
51191 CTCCATTCCATGGTCTGTTCACCTGCTGG
1 CTCCATTCCATAATCTGTTCACCTGC-GG
51220 CTCCATTTCCATAATCTCGTTCACCTG-GG
1 CTCCA-TTCCATAATCT-GTTCACCTGCGG
51249 CT
1 CT
51251 TTCCGTCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 9 0.33
30 9 0.33
31 9 0.33
ACGTcount: A:0.13, C:0.35, G:0.17, T:0.35
Consensus pattern (28 bp):
CTCCATTCCATAATCTGTTCACCTGCGG
Left flanking sequence: Indices 50691 -- 51190
GACAGAAAGGCGTGGGACAATGGCCTCAGCCTGGCCTCAGCCAGAGGTTTTTGGGGACAATGGCC
TCAACATGGCTTCCTACAAACAATGGTGGCTTGGTTGTCGTCTGGGTAGCTGGTTGACACGACCG
TCGAGTCGAGCTAGGATAGCCATTCGCGACCGAGTCGAGCTAAGATAGCGCCATTGCGACCGTAT
TTAGTCGAATTAGCTCGTGTGTCGAGTCAAAGGACTCGTTTCCACCTGCTGGGCTCTCCACCTGC
TGGGCTCTCCACCTGCTGGCTCCCCACCTGCTGGCTCTCCATTTCCATGGTCGTCCACCTGATAG
GCTCACCATTGCCGTCGTCTCGTTTCCACCTGATGGACGAGCCAATGCCATGATCTCGTTCACCT
ACGGGGCTCCCCGTATCCATGGTTTCGTTCCCAAGCCTCGCTCTCCATTTCCATGGTCTCATTCT
GAAGACTCTCTCTCCATTGCCATCGTCTCGTTCACCAGATAGACT
Right flanking sequence: Indices 51251 -- 51750
TTCCGTCTCTATGGTCTCGTCCACCTCCAATTCTACGGTCTGTTCGCTCGTTCACGTCTTATCGT
CTCTTATATACATTAAATCGTTACCTAAGGGTTCTGCTTAACGAACTCAACACCCTTCTGGATGT
TCTTGATCAAGGTCTCCTTGGCGGTCTTGACCATCTCCTCCTCGTAGTCAGCCAACTCACCCAAG
CCGTGGATCTTGGCAACACCCTGGGGGCCCAAGGTCACCTTGGAAGAGAAGAAGTCGACACCCTC
GGACTTGAACAAGGGCGAGTCCACGAAAGTGGGCTCGATCACGTCCTGCTCACCAGCCAAACCGT
CCAAAACGGCACCGGCCATGCGGGCACCGGCCTGGGCCATCGACAAAGTGGCGGAACCAGCACCG
TCCTTGGCCTTGACGACCTCGTCACCACCAAACTGGATGCGGTGGATAAGCGCGTCACGCTTGTC
CTGGGCCATGGTCTTGTGGTTGGTCTGCGAGATCAAGGGGACAAT
Found at i:54712 original size:48 final size:48
Alignment explanation
Indices: 54640--55111 Score: 730
Period size: 48 Copynumber: 9.8 Consensus size: 48
54630 ATGACGAGTC
* * * *
54640 AGAAGATGCCTCAGTCAGCGAAGGCACGGCAGACGAGGACTCCTGAGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
* * *
54688 CGAAGAGGCCTCGGT-AGAAGAAGGCACGGCGGACGAAGACTCCTGGGA
1 AGAAGAGGCCTCAGTCAG-CGAAGGCACGGCGGACGAAGACTCCTGGGA
*
54736 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
* * *
54784 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAGGACTCCTGGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
54832 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
* *
54880 AGAAGAGGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
* * *
54928 AGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAGGACTCCTGGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
* * *
54976 AGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAGGACTCCTGGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
*
55024 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCGGA
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
* *
55072 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGAC
1 AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGAC
Statistics
Matches: 391, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 2 0.01
48 387 0.99
49 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.35, T:0.08
Consensus pattern (48 bp):
AGAAGAGGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTGGGA
Left flanking sequence: Indices 54140 -- 54639
CGGTTGAACCGTGGGGGTAGCTGCGAATAGACTAAAATTATTTTTTGCCTTTCCCGGTATAAACC
ACAAAACTATCGAGGATGAGCCCGTGGTCTCCACCACCGAAACCTGGCTCTCCCGTCCACTTTTC
GGCTCCCGGGCCATCTCATCGCCCCCCATCGCTCAGACACCGCCCACACACCCCCACACCTTCGC
TACATGCGATAATGGCAAGTCTTGATGATACAATCCGTGGGAATGGGACCCGTCTCCAGAGCCAG
ATCAGTGGAAATGTAGTACGAAGAGCTAGTGGAGTACTCAGTCGAGTGGTCTGAAGACGAGGGAG
AAGCAGACAGGGTCTCGGACAGGGACTCAACACTAGAGGAAGGAACCTCAGTCAGCGAAGGAAGA
GAGGAGGAAGACTCAGATTCGGAGGAGGCTTCTGTGGAAGATGGGATGGCGGACGAAGATTGTTC
GGAAGAAGAGACCTCAGTCAGAGAAGGAATTGCCGATGACGAGTC
Right flanking sequence: None
Done.