sallet_2.scaffold.fasta.s66.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold82
Parameters: 2 7 7 80 10 50 500
Length:  169606

Tables:   1   2   

This is table  1  of  2  ( 141 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12740--12830	9	10.4	9	75	9	55	24	32	36	6	1.81
12669--12834	51	3.3	51	90	0	251	25	34	31	9	1.87
12867--12896	9	3.3	9	95	0	51	26	26	40	6	1.81
12875--12946	33	2.2	33	85	5	92	26	38	27	6	1.82
12810--12991	99	1.8	99	84	0	247	24	35	29	10	1.90
12965--13066	9	11.0	9	85	6	96	21	25	44	8	1.81
12981--13079	18	5.3	18	78	7	99	21	26	44	8	1.79
13221--13252	12	2.7	12	95	0	55	9	56	18	15	1.66
27390--27415	12	2.2	12	100	0	52	0	7	53	38	1.30
40160--40217	27	2.1	27	90	6	91	6	27	18	46	1.75
42329--42366	11	3.5	11	92	0	67	21	7	44	26	1.79
44249--44301	21	2.6	21	90	3	81	35	26	22	15	1.93
47147--47210	26	2.5	26	81	0	92	39	20	17	23	1.92
47542--47607	16	4.1	16	96	0	123	36	50	0	13	1.42
50334--50377	20	2.2	20	87	0	61	31	45	9	13	1.75
50381--50419	13	3.0	13	88	0	60	30	46	5	17	1.70
50370--50419	26	1.9	26	87	0	73	26	50	6	18	1.69
58758--58794	10	3.7	10	89	10	58	40	18	37	2	1.65
58969--58996	12	2.3	12	100	0	56	14	14	53	17	1.73
59211--59289	39	2.0	39	90	0	122	17	24	30	27	1.97
59564--59629	18	3.7	18	86	8	89	10	46	21	21	1.80
60804--60851	16	3.0	16	87	6	71	27	54	0	18	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60976--61018	9	4.8	9	81	18	54	37	48	13	0	1.43
60968--61016	8	5.6	8	80	17	53	38	46	14	0	1.44
61478--61524	24	2.0	24	87	8	69	12	34	53	0	1.39
61501--61718	99	2.2	99	99	0	427	14	33	50	1	1.53
61718--61776	21	2.8	21	89	0	91	22	33	40	3	1.70
62149--62205	21	2.7	21	83	0	69	19	17	50	12	1.77
62191--62247	21	2.7	21	97	0	105	28	19	47	5	1.71
62838--62882	21	2.1	21	100	0	90	26	31	37	4	1.76
63009--63066	21	2.8	21	91	0	98	10	32	39	17	1.83
63125--63193	21	3.3	21	87	4	104	17	47	26	8	1.76
63946--63991	21	2.2	21	88	0	65	23	13	50	13	1.76
64062--64114	21	2.5	21	87	0	79	33	16	35	13	1.88
64102--64156	21	2.6	21	77	5	58	34	14	40	10	1.81
68812--68885	16	4.7	16	80	9	89	43	1	41	13	1.52
68828--68890	31	2.0	31	96	0	117	42	3	38	15	1.63
69071--69109	19	2.1	19	90	0	60	41	35	17	5	1.72
73622--73664	22	2.0	22	95	0	77	0	9	55	34	1.32
73731--73766	14	2.6	14	86	0	54	25	25	47	2	1.65
80053--80133	23	3.6	23	91	1	119	28	27	8	35	1.86
81609--81675	17	3.9	17	100	0	134	29	11	34	23	1.91
81687--81728	19	2.0	22	86	13	63	52	14	21	11	1.73
81708--81781	29	2.5	30	86	4	114	54	13	18	13	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81812--81842	10	3.1	10	95	0	53	70	12	9	6	1.31
87244--87288	15	3.1	15	87	6	74	22	6	42	28	1.79
87235--87288	14	3.9	14	81	18	69	20	7	44	27	1.78
87631--87731	19	5.5	19	78	4	75	27	17	30	23	1.97
87640--87686	17	2.8	17	80	0	58	29	14	34	21	1.93
91224--91254	11	2.8	11	100	0	62	29	0	61	9	1.28
92786--92835	12	3.9	12	75	14	55	52	0	46	2	1.12
93327--93411	18	4.7	18	79	0	89	24	11	28	35	1.91
93327--93411	36	2.4	36	82	4	100	24	11	28	35	1.91
93761--93809	6	8.7	6	80	13	59	12	32	20	34	1.90
93746--93861	21	5.5	21	77	11	103	6	33	23	37	1.79
93746--93862	9	13.0	9	80	3	87	5	33	23	36	1.80
95989--96044	10	5.6	10	75	14	53	28	64	3	3	1.27
97200--97239	3	13.3	3	83	0	53	0	7	60	32	1.25
97200--97239	12	3.3	12	89	0	62	0	7	60	32	1.25
99255--99436	8	23.9	8	76	15	154	36	14	34	14	1.87
99611--99650	13	2.7	16	74	22	50	62	30	5	2	1.29
99620--99696	13	5.9	13	79	0	91	57	28	10	3	1.50
102799--102850	12	4.3	12	80	0	68	15	38	11	34	1.83
104300--104339	6	6.2	6	83	16	53	50	0	47	2	1.14
104289--104341	14	3.8	14	87	7	72	49	1	47	1	1.23
104298--104339	13	3.2	13	90	6	66	50	0	47	2	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104332--104431	10	10.0	10	76	8	69	48	0	51	1	1.07
104335--104441	18	5.5	18	77	16	90	47	0	50	0	1.13
104345--104445	14	7.5	14	78	14	97	47	0	50	0	1.14
104338--104396	2	30.0	2	89	3	93	50	0	49	0	1.00
104345--104414	10	6.6	11	79	20	71	47	0	51	1	1.09
104589--104628	19	2.1	19	90	0	62	32	25	20	22	1.98
104780--104832	14	3.5	14	76	18	52	47	5	45	1	1.37
104791--104922	4	32.5	4	68	14	56	44	8	43	3	1.52
104791--104922	10	13.0	10	68	13	56	44	8	43	3	1.52
104775--104834	16	3.8	16	88	0	84	46	6	45	1	1.39
106082--106126	21	2.1	21	100	0	90	11	55	6	26	1.59
106448--106492	11	4.2	10	88	8	54	6	40	2	51	1.41
106455--106496	11	3.9	11	93	3	68	7	38	0	54	1.28
106486--106518	12	2.8	12	95	0	57	9	39	6	45	1.61
108637--108714	12	7.0	11	76	12	54	33	25	33	7	1.84
108651--108715	10	6.0	10	75	13	58	32	23	35	9	1.86
108605--108701	43	2.2	44	85	3	126	30	26	34	8	1.86
108661--108715	23	2.4	23	87	3	76	32	23	34	9	1.86
115111--115164	15	3.5	15	89	2	81	22	31	12	33	1.92
117694--117745	12	4.8	12	71	26	53	48	1	25	25	1.62
117790--117859	4	18.5	4	70	16	51	52	1	42	2	1.24
117785--117863	22	3.7	22	81	6	90	53	1	41	3	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117785--117832	11	4.4	11	91	0	78	47	0	45	6	1.27
117801--117862	20	2.9	21	80	9	63	56	1	40	1	1.19
117803--117861	7	8.4	7	75	17	52	55	1	40	1	1.20
117790--117864	11	7.0	11	75	17	50	54	1	41	2	1.23
118800--118857	11	5.4	11	85	8	75	10	27	1	60	1.39
118800--118857	21	2.7	22	84	7	75	10	27	1	60	1.39
118926--118957	11	2.9	11	95	0	55	21	25	25	28	1.99
119332--119415	24	3.5	24	90	3	134	34	29	8	27	1.86
119332--119427	13	7.9	13	72	14	80	33	29	9	28	1.88
120928--120958	16	1.9	16	93	0	53	22	29	45	3	1.68
121493--121546	21	2.6	21	93	0	90	50	18	29	1	1.58
122005--122110	17	6.2	18	83	9	109	34	10	35	18	1.85
125117--125154	12	3.2	12	100	0	76	0	39	42	18	1.50
126583--126609	14	1.9	14	100	0	54	37	14	25	22	1.93
126641--126683	19	2.3	19	100	0	86	25	37	13	23	1.92
128809--128834	12	2.2	12	100	0	52	7	23	61	7	1.49
129308--129345	11	3.5	11	92	7	60	34	26	39	0	1.57
129301--129345	19	2.1	21	84	15	58	35	26	37	0	1.57
129618--129741	11	11.7	10	76	13	90	26	36	8	28	1.86
129612--129670	30	1.9	32	89	6	95	27	37	6	28	1.82
129649--129742	43	2.2	43	78	12	113	26	37	9	26	1.87
129783--129811	2	14.5	2	100	0	58	48	51	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132399--132474	14	5.4	14	92	3	118	43	46	0	10	1.38
132399--132483	28	3.0	28	91	3	127	41	45	0	12	1.42
132407--132483	14	5.5	14	84	9	79	40	45	0	14	1.45
132493--132564	12	6.0	12	91	0	117	31	47	1	19	1.58
132493--132573	24	3.3	24	87	3	117	33	45	1	19	1.59
132493--132573	36	2.2	37	88	4	119	33	45	1	19	1.59
132693--132744	12	4.3	12	81	13	63	1	46	0	51	1.12
132681--132751	24	3.0	24	82	10	85	1	45	1	52	1.18
133766--133883	13	9.2	13	95	3	213	47	7	30	14	1.72
134051--134084	8	4.2	8	96	0	59	11	0	44	44	1.40

Tables:   1   2