Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold82
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 169606
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
File 1 of 2
Found at i:12752 original size:9 final size:9
Alignment explanation
Indices: 12740--12830 Score: 55
Period size: 9 Copynumber: 10.4 Consensus size: 9
12730 CCAACCCTAC
*
12740 CAACGGTGG
1 CAACGGCGG
12749 CAACGGCGG
1 CAACGGCGG
*
12758 TAACGGCGG
1 CAACGGCGG
*
12767 CAGCGGCGG
1 CAACGGCGG
*
12776 CAAC--C-C
1 CAACGGCGG
* **
12782 CAAC-CCTAC
1 CAACGGC-GG
*
12791 CAACGGTGG
1 CAACGGCGG
12800 CAACGGCGG
1 CAACGGCGG
*
12809 TAACGGCGG
1 CAACGGCGG
*
12818 TAACGGCGG
1 CAACGGCGG
12827 CAAC
1 CAAC
12831 CCCACTGCGA
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
6 4 0.06
7 2 0.03
9 59 0.91
ACGTcount: A:0.24, C:0.33, G:0.36, T:0.07
Consensus pattern (9 bp):
CAACGGCGG
Left flanking sequence: Indices 12240 -- 12739
GTTTTGGACTCTTCCTCTGCTGCAATTAAGGTTGCTGGTTACAAGCTGCCTTGGCAATACACTGT
CGCTGGATTCGGTGGTGGCAATTGGATTGCCTCCGAGCTTCCCATTCGCGACTTCGACTACAACA
GCCAGCAAGGTGTTCTCACGATTTACTCAGACTACTCGAAGACAGTCTCCGTTCAGTTCAAGATT
GGACAGGGTTATGACGAAACCAGATTTGTGATTGGTACTGCGACCTTGGGTGGCATCACTGTTCA
AAACAACGGTATCAAGTACACCGGCCAGGTTCCCCCTTTTGCTGTCAAGGTTCCTGCTCAATGTG
TTCAGTGTGTGATGAGACCCGACCAGCCCGGTTACGTCGAGCAGCCTGATGCCCCTACTACTTTG
CTGACTACTGCTGGCCCCACTAACCCTTCTCCTACTAATGGCGGTAACCCCAACCCTACCAACGG
TGGCAACGATGGCAATGGTGGTAATGGCGGCAACCCCAACCCTAC
Right flanking sequence: Indices 12831 -- 13330
CCCACTGCGACCGACGGTGGTATCCCTAATCCTACCAACGGCGGCAACGGCGGTAACGGCGGTAA
CCCCAACCCTACCAACGGCGGCAACGGCGGTAGCCCCACTGCAACCAACGGTGGTAACCCCAACC
CTACCAACGGTGGCAATGGTGGCAATGGCGGCAACGGCGGCAACGGCGGTAACGGCGGCGACCAC
GGTGGCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGTGACGGTGGCAACCCCATCCCTAC
CAACGGTGGCAACGGCGGTAAACCCACCGCGACCGACGGCGGTAACCCCAACCCTACAACAGGTG
GCAATGTTCACCCCATCACCACCAGCGGATTAGTTCCCACTGGTGGTGATGGTGGGCACACTCAC
CCCACTGGCCTTCCCACCGGCCTTCCCACCGGTTCCGGATACACTACCATTACCGCTACCGCTGG
ACCTCCTGATGTGACGTTTACTAACCCGCCCGTTCCCTCGGGCTG
Found at i:12850 original size:51 final size:51
Alignment explanation
Indices: 12669--12834 Score: 251
Period size: 51 Copynumber: 3.3 Consensus size: 51
12659 TCCTACTAAT
* ** * * * *
12669 GGCGGTAACCCCAACCCTACCAACGGTGGCAACGATGGCAATGGTGGTAAT
1 GGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAAC
* *
12720 GGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGCAGC
1 GGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAAC
12771 GGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAAC
1 GGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAAC
12822 GGCGGCAACCCCA
1 GGCGGCAACCCCA
12835 CTGCGACCGA
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 104 1.00
ACGTcount: A:0.25, C:0.34, G:0.31, T:0.09
Consensus pattern (51 bp):
GGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAAC
Left flanking sequence: Indices 12169 -- 12668
TTCGAGCTCAGGACAACGGCTTGATCTTCATCAGAAACCACTCTTTGAGAGTTTACCCCGAACAG
ACTCTTGTTTTGGACTCTTCCTCTGCTGCAATTAAGGTTGCTGGTTACAAGCTGCCTTGGCAATA
CACTGTCGCTGGATTCGGTGGTGGCAATTGGATTGCCTCCGAGCTTCCCATTCGCGACTTCGACT
ACAACAGCCAGCAAGGTGTTCTCACGATTTACTCAGACTACTCGAAGACAGTCTCCGTTCAGTTC
AAGATTGGACAGGGTTATGACGAAACCAGATTTGTGATTGGTACTGCGACCTTGGGTGGCATCAC
TGTTCAAAACAACGGTATCAAGTACACCGGCCAGGTTCCCCCTTTTGCTGTCAAGGTTCCTGCTC
AATGTGTTCAGTGTGTGATGAGACCCGACCAGCCCGGTTACGTCGAGCAGCCTGATGCCCCTACT
ACTTTGCTGACTACTGCTGGCCCCACTAACCCTTCTCCTACTAAT
Right flanking sequence: Indices 12835 -- 13334
CTGCGACCGACGGTGGTATCCCTAATCCTACCAACGGCGGCAACGGCGGTAACGGCGGTAACCCC
AACCCTACCAACGGCGGCAACGGCGGTAGCCCCACTGCAACCAACGGTGGTAACCCCAACCCTAC
CAACGGTGGCAATGGTGGCAATGGCGGCAACGGCGGCAACGGCGGTAACGGCGGCGACCACGGTG
GCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGTGACGGTGGCAACCCCATCCCTACCAAC
GGTGGCAACGGCGGTAAACCCACCGCGACCGACGGCGGTAACCCCAACCCTACAACAGGTGGCAA
TGTTCACCCCATCACCACCAGCGGATTAGTTCCCACTGGTGGTGATGGTGGGCACACTCACCCCA
CTGGCCTTCCCACCGGCCTTCCCACCGGTTCCGGATACACTACCATTACCGCTACCGCTGGACCT
CCTGATGTGACGTTTACTAACCCGCCCGTTCCCTCGGGCTGCCTT
Found at i:12893 original size:9 final size:9
Alignment explanation
Indices: 12867--12896 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
12857 TAATCCTACC
*
12867 AACGGCGGC
1 AACGGCGGT
12876 AACGGCGGT
1 AACGGCGGT
12885 AACGGCGGT
1 AACGGCGGT
12894 AAC
1 AAC
12897 CCCAACCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.40, T:0.07
Consensus pattern (9 bp):
AACGGCGGT
Left flanking sequence: Indices 12367 -- 12866
ACAGCCAGCAAGGTGTTCTCACGATTTACTCAGACTACTCGAAGACAGTCTCCGTTCAGTTCAAG
ATTGGACAGGGTTATGACGAAACCAGATTTGTGATTGGTACTGCGACCTTGGGTGGCATCACTGT
TCAAAACAACGGTATCAAGTACACCGGCCAGGTTCCCCCTTTTGCTGTCAAGGTTCCTGCTCAAT
GTGTTCAGTGTGTGATGAGACCCGACCAGCCCGGTTACGTCGAGCAGCCTGATGCCCCTACTACT
TTGCTGACTACTGCTGGCCCCACTAACCCTTCTCCTACTAATGGCGGTAACCCCAACCCTACCAA
CGGTGGCAACGATGGCAATGGTGGTAATGGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCG
GTAACGGCGGCAGCGGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAAC
GGCGGCAACCCCACTGCGACCGACGGTGGTATCCCTAATCCTACC
Right flanking sequence: Indices 12897 -- 13396
CCCAACCCTACCAACGGCGGCAACGGCGGTAGCCCCACTGCAACCAACGGTGGTAACCCCAACCC
TACCAACGGTGGCAATGGTGGCAATGGCGGCAACGGCGGCAACGGCGGTAACGGCGGCGACCACG
GTGGCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGTGACGGTGGCAACCCCATCCCTACC
AACGGTGGCAACGGCGGTAAACCCACCGCGACCGACGGCGGTAACCCCAACCCTACAACAGGTGG
CAATGTTCACCCCATCACCACCAGCGGATTAGTTCCCACTGGTGGTGATGGTGGGCACACTCACC
CCACTGGCCTTCCCACCGGCCTTCCCACCGGTTCCGGATACACTACCATTACCGCTACCGCTGGA
CCTCCTGATGTGACGTTTACTAACCCGCCCGTTCCCTCGGGCTGCCTTGTTACCAAGGTGACAAT
GACGGTAACCGCCACCGAGTACTGGTTGGTGTTGCCTACCGCATA
Found at i:12943 original size:33 final size:33
Alignment explanation
Indices: 12875--12946 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
12865 CCAACGGCGG
* *
12875 CAACGGCGGTAACGGCGGTAACCCCAACCCTAC
1 CAACGGCGGCAACGGCGGTAACCCCAACCCAAC
* *
12908 CAACGGCGGCAACGGCGGTAGCCCC-ACTGCAAC
1 CAACGGCGGCAACGGCGGTAACCCCAAC-CCAAC
12941 CAACGG
1 CAACGG
12947 TGGTAACCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 2 0.06
33 32 0.94
ACGTcount: A:0.26, C:0.39, G:0.28, T:0.07
Consensus pattern (33 bp):
CAACGGCGGCAACGGCGGTAACCCCAACCCAAC
Left flanking sequence: Indices 12375 -- 12874
CAAGGTGTTCTCACGATTTACTCAGACTACTCGAAGACAGTCTCCGTTCAGTTCAAGATTGGACA
GGGTTATGACGAAACCAGATTTGTGATTGGTACTGCGACCTTGGGTGGCATCACTGTTCAAAACA
ACGGTATCAAGTACACCGGCCAGGTTCCCCCTTTTGCTGTCAAGGTTCCTGCTCAATGTGTTCAG
TGTGTGATGAGACCCGACCAGCCCGGTTACGTCGAGCAGCCTGATGCCCCTACTACTTTGCTGAC
TACTGCTGGCCCCACTAACCCTTCTCCTACTAATGGCGGTAACCCCAACCCTACCAACGGTGGCA
ACGATGGCAATGGTGGTAATGGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGC
GGCAGCGGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGCAA
CCCCACTGCGACCGACGGTGGTATCCCTAATCCTACCAACGGCGG
Right flanking sequence: Indices 12947 -- 13446
TGGTAACCCCAACCCTACCAACGGTGGCAATGGTGGCAATGGCGGCAACGGCGGCAACGGCGGTA
ACGGCGGCGACCACGGTGGCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGTGACGGTGGC
AACCCCATCCCTACCAACGGTGGCAACGGCGGTAAACCCACCGCGACCGACGGCGGTAACCCCAA
CCCTACAACAGGTGGCAATGTTCACCCCATCACCACCAGCGGATTAGTTCCCACTGGTGGTGATG
GTGGGCACACTCACCCCACTGGCCTTCCCACCGGCCTTCCCACCGGTTCCGGATACACTACCATT
ACCGCTACCGCTGGACCTCCTGATGTGACGTTTACTAACCCGCCCGTTCCCTCGGGCTGCCTTGT
TACCAAGGTGACAATGACGGTAACCGCCACCGAGTACTGGTTGGTGTTGCCTACCGCATAAATAC
CCATCGATTTTCTCTTTCGACTTTTTTCGTCCGGGCGAATACCCC
Found at i:12991 original size:99 final size:99
Alignment explanation
Indices: 12810--12991 Score: 247
Period size: 99 Copynumber: 1.8 Consensus size: 99
12800 CAACGGCGGT
* * * * * *
12810 AACGGCGGTAACGGCGGCAACCCCACTGCGACCGACGGTGGTATCCCTAATCCTACCAACGGCGG
1 AACGGCGGCAACGGCGGCAACCCCACTGCAACCAACGGTGGTAACCCCAACCCTACCAACGGCGG
*
12875 CAACGGCGGTAACGGCGGTAACCCCAACCCTACC
66 CAACGGCGGCAACGGCGGTAACCCCAACCCTACC
* * *
12909 AACGGCGGCAACGGCGGTAGCCCCACTGCAACCAACGGTGGTAACCCCAACCCTACCAACGGTGG
1 AACGGCGGCAACGGCGGCAACCCCACTGCAACCAACGGTGGTAACCCCAACCCTACCAACGGCGG
* * *
12974 CAATGGTGGCAATGGCGG
66 CAACGGCGGCAACGGCGG
12992 CAACGGCGGC
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 70 1.00
ACGTcount: A:0.25, C:0.35, G:0.29, T:0.11
Consensus pattern (99 bp):
AACGGCGGCAACGGCGGCAACCCCACTGCAACCAACGGTGGTAACCCCAACCCTACCAACGGCGG
CAACGGCGGCAACGGCGGTAACCCCAACCCTACC
Left flanking sequence: Indices 12310 -- 12809
GATTCGGTGGTGGCAATTGGATTGCCTCCGAGCTTCCCATTCGCGACTTCGACTACAACAGCCAG
CAAGGTGTTCTCACGATTTACTCAGACTACTCGAAGACAGTCTCCGTTCAGTTCAAGATTGGACA
GGGTTATGACGAAACCAGATTTGTGATTGGTACTGCGACCTTGGGTGGCATCACTGTTCAAAACA
ACGGTATCAAGTACACCGGCCAGGTTCCCCCTTTTGCTGTCAAGGTTCCTGCTCAATGTGTTCAG
TGTGTGATGAGACCCGACCAGCCCGGTTACGTCGAGCAGCCTGATGCCCCTACTACTTTGCTGAC
TACTGCTGGCCCCACTAACCCTTCTCCTACTAATGGCGGTAACCCCAACCCTACCAACGGTGGCA
ACGATGGCAATGGTGGTAATGGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGC
GGCAGCGGCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGT
Right flanking sequence: Indices 12992 -- 13491
CAACGGCGGCAACGGCGGTAACGGCGGCGACCACGGTGGCAACGGTGGCAACGGCGGTAACGGCG
GTAACGGCGGTGACGGTGGCAACCCCATCCCTACCAACGGTGGCAACGGCGGTAAACCCACCGCG
ACCGACGGCGGTAACCCCAACCCTACAACAGGTGGCAATGTTCACCCCATCACCACCAGCGGATT
AGTTCCCACTGGTGGTGATGGTGGGCACACTCACCCCACTGGCCTTCCCACCGGCCTTCCCACCG
GTTCCGGATACACTACCATTACCGCTACCGCTGGACCTCCTGATGTGACGTTTACTAACCCGCCC
GTTCCCTCGGGCTGCCTTGTTACCAAGGTGACAATGACGGTAACCGCCACCGAGTACTGGTTGGT
GTTGCCTACCGCATAAATACCCATCGATTTTCTCTTTCGACTTTTTTCGTCCGGGCGAATACCCC
GAACCACCATCTTTAGATAGGTAATTTAAGATATGGCTGTTTTAC
Found at i:13067 original size:9 final size:9
Alignment explanation
Indices: 12965--13066 Score: 96
Period size: 9 Copynumber: 11.0 Consensus size: 9
12955 CCAACCCTAC
*
12965 CAACGGTGG
1 CAACGGCGG
* *
12974 CAATGGTGG
1 CAACGGCGG
*
12983 CAATGGCGG
1 CAACGGCGG
12992 CAACGGCGG
1 CAACGGCGG
13001 CAACGGCGG
1 CAACGGCGG
*
13010 TAACGGCGG
1 CAACGGCGG
*
13019 CGACCACGGTGG
1 C-A--ACGGCGG
*
13031 CAACGGTGG
1 CAACGGCGG
13040 CAACGGCGG
1 CAACGGCGG
*
13049 TAACGGCGG
1 CAACGGCGG
*
13058 TAACGGCGG
1 CAACGGCGG
13067 TGACGGTGGC
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
9 73 0.89
10 1 0.01
11 1 0.01
12 7 0.09
ACGTcount: A:0.22, C:0.25, G:0.44, T:0.09
Consensus pattern (9 bp):
CAACGGCGG
Left flanking sequence: Indices 12465 -- 12964
ATTGGTACTGCGACCTTGGGTGGCATCACTGTTCAAAACAACGGTATCAAGTACACCGGCCAGGT
TCCCCCTTTTGCTGTCAAGGTTCCTGCTCAATGTGTTCAGTGTGTGATGAGACCCGACCAGCCCG
GTTACGTCGAGCAGCCTGATGCCCCTACTACTTTGCTGACTACTGCTGGCCCCACTAACCCTTCT
CCTACTAATGGCGGTAACCCCAACCCTACCAACGGTGGCAACGATGGCAATGGTGGTAATGGCGG
CAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGCAGCGGCGGCAACCCCAACCCTA
CCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGCAACCCCACTGCGACCGACGGTGGTATC
CCTAATCCTACCAACGGCGGCAACGGCGGTAACGGCGGTAACCCCAACCCTACCAACGGCGGCAA
CGGCGGTAGCCCCACTGCAACCAACGGTGGTAACCCCAACCCTAC
Right flanking sequence: Indices 13067 -- 13566
TGACGGTGGCAACCCCATCCCTACCAACGGTGGCAACGGCGGTAAACCCACCGCGACCGACGGCG
GTAACCCCAACCCTACAACAGGTGGCAATGTTCACCCCATCACCACCAGCGGATTAGTTCCCACT
GGTGGTGATGGTGGGCACACTCACCCCACTGGCCTTCCCACCGGCCTTCCCACCGGTTCCGGATA
CACTACCATTACCGCTACCGCTGGACCTCCTGATGTGACGTTTACTAACCCGCCCGTTCCCTCGG
GCTGCCTTGTTACCAAGGTGACAATGACGGTAACCGCCACCGAGTACTGGTTGGTGTTGCCTACC
GCATAAATACCCATCGATTTTCTCTTTCGACTTTTTTCGTCCGGGCGAATACCCCGAACCACCAT
CTTTAGATAGGTAATTTAAGATATGGCTGTTTTACAATCTTGTTAGAAGATCTCCCGAGTCTTCT
GAATTTAAATCAAGTCGCAAGTATCACCGCTTAGTTTTTGGGATT
Found at i:13067 original size:18 final size:18
Alignment explanation
Indices: 12981--13079 Score: 99
Period size: 18 Copynumber: 5.3 Consensus size: 18
12971 TGGCAATGGT
* *
12981 GGCAATGGCGGCAACGGC
1 GGCAACGGCGGTAACGGC
12999 GGCAACGGCGGTAACGGC
1 GGCAACGGCGGTAACGGC
* * *
13017 GGCGACCACGGTGGCAACGGT
1 GGC-A--ACGGCGGTAACGGC
13038 GGCAACGGCGGTAACGGC
1 GGCAACGGCGGTAACGGC
* * *
13056 GGTAACGGCGGTGACGGT
1 GGCAACGGCGGTAACGGC
13074 GGCAAC
1 GGCAAC
13080 CCCATCCCTA
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
18 50 0.76
19 1 0.02
20 1 0.02
21 14 0.21
ACGTcount: A:0.21, C:0.26, G:0.44, T:0.08
Consensus pattern (18 bp):
GGCAACGGCGGTAACGGC
Left flanking sequence: Indices 12481 -- 12980
TGGGTGGCATCACTGTTCAAAACAACGGTATCAAGTACACCGGCCAGGTTCCCCCTTTTGCTGTC
AAGGTTCCTGCTCAATGTGTTCAGTGTGTGATGAGACCCGACCAGCCCGGTTACGTCGAGCAGCC
TGATGCCCCTACTACTTTGCTGACTACTGCTGGCCCCACTAACCCTTCTCCTACTAATGGCGGTA
ACCCCAACCCTACCAACGGTGGCAACGATGGCAATGGTGGTAATGGCGGCAACCCCAACCCTACC
AACGGTGGCAACGGCGGTAACGGCGGCAGCGGCGGCAACCCCAACCCTACCAACGGTGGCAACGG
CGGTAACGGCGGTAACGGCGGCAACCCCACTGCGACCGACGGTGGTATCCCTAATCCTACCAACG
GCGGCAACGGCGGTAACGGCGGTAACCCCAACCCTACCAACGGCGGCAACGGCGGTAGCCCCACT
GCAACCAACGGTGGTAACCCCAACCCTACCAACGGTGGCAATGGT
Right flanking sequence: Indices 13080 -- 13579
CCCATCCCTACCAACGGTGGCAACGGCGGTAAACCCACCGCGACCGACGGCGGTAACCCCAACCC
TACAACAGGTGGCAATGTTCACCCCATCACCACCAGCGGATTAGTTCCCACTGGTGGTGATGGTG
GGCACACTCACCCCACTGGCCTTCCCACCGGCCTTCCCACCGGTTCCGGATACACTACCATTACC
GCTACCGCTGGACCTCCTGATGTGACGTTTACTAACCCGCCCGTTCCCTCGGGCTGCCTTGTTAC
CAAGGTGACAATGACGGTAACCGCCACCGAGTACTGGTTGGTGTTGCCTACCGCATAAATACCCA
TCGATTTTCTCTTTCGACTTTTTTCGTCCGGGCGAATACCCCGAACCACCATCTTTAGATAGGTA
ATTTAAGATATGGCTGTTTTACAATCTTGTTAGAAGATCTCCCGAGTCTTCTGAATTTAAATCAA
GTCGCAAGTATCACCGCTTAGTTTTTGGGATTCATGTGCGAGCAT
Found at i:13242 original size:12 final size:12
Alignment explanation
Indices: 13221--13252 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
13211 GCACACTCAC
*
13221 CCCACTGGCCTT
1 CCCACCGGCCTT
13233 CCCACCGGCCTT
1 CCCACCGGCCTT
13245 CCCACCGG
1 CCCACCGG
13253 TTCCGGATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.56, G:0.19, T:0.16
Consensus pattern (12 bp):
CCCACCGGCCTT
Left flanking sequence: Indices 12721 -- 13220
GCGGCAACCCCAACCCTACCAACGGTGGCAACGGCGGTAACGGCGGCAGCGGCGGCAACCCCAAC
CCTACCAACGGTGGCAACGGCGGTAACGGCGGTAACGGCGGCAACCCCACTGCGACCGACGGTGG
TATCCCTAATCCTACCAACGGCGGCAACGGCGGTAACGGCGGTAACCCCAACCCTACCAACGGCG
GCAACGGCGGTAGCCCCACTGCAACCAACGGTGGTAACCCCAACCCTACCAACGGTGGCAATGGT
GGCAATGGCGGCAACGGCGGCAACGGCGGTAACGGCGGCGACCACGGTGGCAACGGTGGCAACGG
CGGTAACGGCGGTAACGGCGGTGACGGTGGCAACCCCATCCCTACCAACGGTGGCAACGGCGGTA
AACCCACCGCGACCGACGGCGGTAACCCCAACCCTACAACAGGTGGCAATGTTCACCCCATCACC
ACCAGCGGATTAGTTCCCACTGGTGGTGATGGTGGGCACACTCAC
Right flanking sequence: Indices 13253 -- 13752
TTCCGGATACACTACCATTACCGCTACCGCTGGACCTCCTGATGTGACGTTTACTAACCCGCCCG
TTCCCTCGGGCTGCCTTGTTACCAAGGTGACAATGACGGTAACCGCCACCGAGTACTGGTTGGTG
TTGCCTACCGCATAAATACCCATCGATTTTCTCTTTCGACTTTTTTCGTCCGGGCGAATACCCCG
AACCACCATCTTTAGATAGGTAATTTAAGATATGGCTGTTTTACAATCTTGTTAGAAGATCTCCC
GAGTCTTCTGAATTTAAATCAAGTCGCAAGTATCACCGCTTAGTTTTTGGGATTCATGTGCGAGC
ATTGTATAATGGCTGCGAATTTGGATGCATCTTAAGTTTCGTGTGTGAATCAACAGCCATTCCAA
GCAAGTAAGATAACAGAAAGTCATAGATATATGACCTACTAGCTACTAAATTGAACATTTTGAGG
CGAGTCTCTATACTCTCAGCAAGTACTCCTGAGTACTTTGAACAA
Found at i:27407 original size:12 final size:12
Alignment explanation
Indices: 27390--27415 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
27380 GCAACAGAAG
27390 GGCTGGTTTGGT
1 GGCTGGTTTGGT
27402 GGCTGGTTTGGT
1 GGCTGGTTTGGT
27414 GG
1 GG
27416 AGGAGGCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.54, T:0.38
Consensus pattern (12 bp):
GGCTGGTTTGGT
Left flanking sequence: Indices 26890 -- 27389
CAGGTCTGGGTAAAGTGACGATGCACAAGGGTGGAGCAACGGCACTGACGCCTAAAATTGATGGT
GACGTGCTGTTCGAGGAGTTCGGACTTGTTTTAGACGACAACCAGTATCAGGACCTTGTAGCAAC
GGCACTGAAGTTCCACTGGTACCAGAAAACCAGCAAGTATCGCAAGTTTAAGCCAGACACCAAAC
CCCTGGAAGATCCTCTTGGGTGGTTTCGGTTTGCCGCAGAGGCAGTGCTTGATGAGGTCCACACG
AAGCACGAGCAGTGGACATGGGAGCATTTCAAGAAGCGGCGTGATCAGCGTAAGGAGTACGTCGA
GCTCTACATTGACCGTCTTATTGGCAAGAACCAGGACTTCATGGGCACTGACCCGCTTAAAGAGC
TTGAGGACGAGCTTTCACTCGAGGATATTGAGTGGTTCCGCGGTGTAGCCCGCAAGGAGATGAAA
GAGAAGGGACTTAAGCCCAAGGCCACCCAGGCGCCGCAACAGAAG
Right flanking sequence: Indices 27416 -- 27915
AGGAGGCAACAAGGCCCAAGGGTCCGACTCGGTGCCTGCCGATGACACAGTTGTTCCAGGCACGT
TTTCTCTTTCTCAAGAACAACGGGACGCACTTTACGACACGATTGACTTTCACGGCACTCCTGAG
CCCGAGCCACAAACTATGCCTCGAGAGTGGGTTCAGTACTCAGTGCGGGCTCACTTACACCGTGG
AGGAATCACAATCAATCGCAAGGCGGCTTTGCTCGGAGAGATGGTGTTTGAAGGATGTGCCATAG
ATCTCAAGGCACGTACGGATCTGAATCTTGTGGAGTTCAATCTCAATGAGTTCCGAGTTGAGGAC
GGTACGGGCACTTCTCTTTACAAACATGTGGTTTCCGTACAAGAGCTTGGCCATGAACACGAAAC
GGAGCTTGACGACGATGACGCCGACCCGTTCCTTTCGATCAGCTATGAGGATAACCCCTTGGATG
GGGCTGCGGATAAGTCGGTGAAGGCGGCCCTTAAACTGATGACCA
Found at i:40198 original size:27 final size:27
Alignment explanation
Indices: 40160--40217 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
40150 GCGACTGAAA
*
40160 CCTTTTCGGCTTTCTTCAGTGAGG-TCT
1 CCTTTTCAGCTTTCTTCAGTG-GGTTCT
40187 CCTTTTCAGCTTTCTTCAGTGGGTTCT
1 CCTTTTCAGCTTTCTTCAGTGGGTTCT
40214 CCTT
1 CCTT
40218 ATCGTCGAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.07, C:0.28, G:0.19, T:0.47
Consensus pattern (27 bp):
CCTTTTCAGCTTTCTTCAGTGGGTTCT
Left flanking sequence: Indices 39660 -- 40159
TTTACATATCAACAGCGTTCGCTATACAGAACTTTTACTCGAGAACCCAATTTGTCCGGCTATCT
ACGCACCAGCTTGCTGTTTTGACTGAGACGAGTCCTCCGGTTTTGCCTTCACGACCTTGGGGTCG
GGCTGAACATTCTCCACAGGCTCGCCTCGAACACGCGAAAGCGTTAAGCGGATAAGATCAGCTGC
ATTCGTTTGGGGATCATTGGGCGCTGCCTTCACTTCAGAAACCTTTTCCTCAACCACATTGCAGT
AATGAGTCACGGACTTCTGATAAATAGGCTCATTGAACACGGGAAGTGCCCTGATCACGACCAAC
AAGTTGAGGAGCAGCGAGAGCACACCGAATTTGAGTGGGTTTATTTGAACAGCACCGTCCTCCTC
CACGAAAGTATTTTCAATCAGCTTCGCGAGGATATCGAATAAGGTGAGGGCACGGGTGTCGTTGA
GAGTAATGAATTTACGCGATGGAAGCGGGGGAGGAGCGACTGAAA
Right flanking sequence: Indices 40218 -- 40717
ATCGTCGAGTGATAGTTTATCCAAGGATAGGGTGTTGTCGTTAGCTTTCTTTTCGCCACACAACC
CGTGTGCGCGATCTTTAGTTAACAACTCTTTGAAGATCCCCACCAAGACCACTTCGATGTTCTCA
AAAGGACAGTTCTCCAAGGTGTCCACAATAAACCCGTAGGCGGTATCCTCATCCACCATCGTCAA
GAGCTTAGTCAAAAGCGTCGTGGTACAAAATCGGAACGTCGACCGCCGGGTGCTGGTAATCACAT
GGAGCAACACCTGAAACAACACCAAGAGCACCAGAGAGTCGAGGTCCAACGTCAGCAGGTCGTGG
AGAGCGTACCACAACCAGAAAACACACGCATCCTCAGCCATTTCCGAGCGGAACAGCGGCTGCAC
CATCGCGGGTACCAACCCCGAAATGGCCATGGCCACTGCGTCCCGCAACAGTACCTTGGTCGTGA
ATTGGCGCGACTTAGCCACACGATAGGTGTACAAGAACACGAGAC
Found at i:42360 original size:14 final size:11
Alignment explanation
Indices: 42329--42366 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
42319 TTGGGATGGG
42329 TGGGATGATGC
1 TGGGATGATGC
42340 TGGGATGATGC
1 TGGGATGATGC
*
42351 TGGAATGATGC
1 TGGGATGATGC
42362 TGGGA
1 TGGGA
42367 GCAGGTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.21, C:0.08, G:0.45, T:0.26
Consensus pattern (11 bp):
TGGGATGATGC
Left flanking sequence: Indices 41829 -- 42328
CTAGACAATGGACAGGGGTTTACGAGGTATGTAGGTGGTGCCTCTGTGGAGGCAATGTAGCGGCA
AATGTAGGGCGATTGCTATCGCGTCCACGGCGGAAAGGCGTTGTTGTGGGGTAGACCCTGTAGCC
ATCAACACTGACTCATTCATCACGTGCATCATGGACTCCAAGGTGGTTGTCCGGCTCCAGCCCGT
GGGACTGACTCCGCCCACACTGCCACGTGTGTTCAAGTTGGGGCGCGACCAGCTGGTGGCCACCG
TGTCCCAGTTCATCGTCAAGCGGCTCCGGCTCGACCTGGGCCCGTTCCTCTATCTCCAGAGCTCG
TTCCAGGTGAATCCGGACGACAACATTGGCCAGCTTTACGAATTGTACCGCACAGGAGACGAGCT
AATCTTCAGCTACTGTACCACCGCCGCCTTCGGGTGATTGCGTTGACAACAGACGACGGTGGTTC
ATGCAATGCACTTTGGGTACCGGTGGCAAACCCGATTGGGATGGG
Right flanking sequence: Indices 42367 -- 42866
GCAGGTTTATAAGGGACGAATGCCCCCCTAGCCCAATCGAGCGTTTTGTTGTGACCCCTATGACC
TCGGTCCAAACACCCCTGACGACAACCGGTCTTACTGCAGAGTGTCGAGTTAATGTGCGAGCAAC
GACCGGAACTACTGGCCAAGCGTCTTGAGCGCCTCAAGCGCCACACTACAGCCCATTATATAGTC
TATATCACTACCAATAGCCTCAGTCCACCACCCCCCGCTAACCGACTACCCCCGCATTCGCACTA
ATTTCACCGCGAACGACGCGAGACCATCGATGAGCCAGGCCGTGGGCACCCGCAAGGTGCAGAAA
CGGCGATACAAGATCTCCAAGGGGGAGATCCGACGGAAGAAGCGGGAAGCGCTTGCTCGGATCAA
CTACCTCAACGTGGCCACCACCGTGGCCCTCCCCTTGGCCGCGGTGTGGTACCTCGTTGCCAACG
GGATGCCGGTGATCCCTGCGGAGAACGCCACGTTTGTGTTTGGGT
Found at i:44272 original size:20 final size:21
Alignment explanation
Indices: 44249--44301 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
44239 AATATTAATA
44249 GCAACGACGCAAT-ACGTTCT
1 GCAACGACGCAATAACGTTCT
*
44269 GCAACGACGCAATAAGGTTCT
1 GCAACGACGCAATAACGTTCT
*
44290 GCAACGAAGCAA
1 GCAACGACGCAA
44302 GTGCGGTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (21 bp):
GCAACGACGCAATAACGTTCT
Left flanking sequence: Indices 43749 -- 44248
AGATCCAGCAGCAGCAGCTGGTAATCAACCGGATGAAGTCGCAGCTCAACTGGGGCACCCCCATC
TCGAAGTTGCCTATTCTCACCGCTACAGACTTCAAGCGGGTGTGCCAGGAGGCCGACAAGGACCG
GATCTACATTGTCATCCAGAACATCATCCACGATATCACCCCGTTTATGGACCAGCACCCCGGTG
GCGTTCCGTTGCTCCGGGCGTCTCACGGTAAAGACGCCACTAAGGCGTTCTACGGAGGTGTCTAC
GGCCACCTGGCAGCAGCCACCAATCTTTTAGCGACGATGAGAATCGCCGTGCTCTCCACCGGGAA
CGAAGAAGACGTGTGGAAGCGTGTGGCATCAGAGGAACGGGAGGTGAGACCGGAGGAGCGGGACG
ACAAACGAGCATACCAGTCGGCTGAGGCCGCGTAATCGCTGAGCGATCTAATATTTAATGTGACG
GACGGGGATTAGGCTTGGTAGATAGTATGTATGACAATATTAATA
Right flanking sequence: Indices 44302 -- 44801
GTGCGGTTCTACAATGGCGCAGTTACGGTTCTGGTCTAGAGAATCCACGGGATGAAGGCCTATTG
GAGAGCTGGATTAATTGGTGTTCGCGAATTATGCATTGACAACGGTCAGCAGATCAGGCCCGTTT
GGCTAGAAATTCGCACGGCTACTCCGTGGTCAACGCGACCGCAACGCTGCAAATACTCACAAGAA
CCATCACGACCTTGCCGAGCCTCACAGGTATCCTCCTTCAGCTTTTCCCGACCCTATCCCGTCAC
GCGGCTACTCACCGTGGGTGCAGGCCTCTCGTAAAGTTTAACCTTGGCATTATATAAACCCTCGT
AAATCCGCTAACGTAGAATTCCCACCGTGATGGATACGTTTCCACCAGAGATTCTCCACCAAGTG
TTTGGCCAGGTCGACAATGCCCTGGCCTACCGGTTCTTAGCAGCCTGCGAAGGAATCCAGGCGTT
CCAGTCGGTGCGTGACTACCTCGAACCAGTTTTATGTGCTAAGAA
Found at i:47208 original size:26 final size:26
Alignment explanation
Indices: 47147--47210 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
47137 ATCCCATTTG
*
47147 CATAGTAAATAGTCAAGCCAGTGTCA
1 CATAGTAAATAGTCAAGCCAGTATCA
* * *
47173 CATCGCAAATTGTCAAGCCAGTATCA
1 CATAGTAAATAGTCAAGCCAGTATCA
47199 CATAGTAAATAG
1 CATAGTAAATAG
47211 CCTGTTGCGA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (26 bp):
CATAGTAAATAGTCAAGCCAGTATCA
Left flanking sequence: Indices 46647 -- 47146
GTCGCGCTACGACACCACCCGCTTTGTATTACCGCCTAAGTTGTTTCTGGACTGCCCCCGTCTCC
GGATGTTGCTGCTCAAGCGAATCAACGTGAAGTTCGAGACGCCCCTCGCGCTTCCAGCGTCGCTA
GAGCGGCTCGAGCTTCTCGACAACGTTTCTGACCAGATTGCCCTCAGCTTTGTGGGCGGAGACCC
AGCTCTCGAGGCGGTGGTGCTCAACCGGTGCTACGCCGAGCGCGAGGGCCGCAACGTGGGCCCGT
TCAAAATCAAGCGCAACTTCGCGCGGTGGAGCTATGCCCTGCTCGGGGGGTCGCGCAGATTGAGG
CATATGAACGTCGACTACCCTCCGGGAGCGTCCGACCGCCAGCGTCGCGACTTTCTGTACCGCTT
CATCCAGAAAAAGCCCATCGAGGACCTCGGCCCCTACGTGGACGGGGCGTTGGTGGACAAGCCTG
AATCGCTTGACGACATCTGGGTGAACGGGTTCTCTATCCCATTTG
Right flanking sequence: Indices 47211 -- 47710
CCTGTTGCGACCCGTCTTCAGGGTCAGCAAAGGGCTGAAGGCACCGTCGGAGAATTTCTTGTCGT
TCTTCGCCAAGGTGGATTTCTTACTCAGATCGAAGGGTACGAAATGCGGTTATGGAATCAGACGG
AGATCTCAATAGTCGGGAGACTCTATTCCATACAGTTTAACAGTATCCATGAATGTAGTTTGTGT
AACTTACTAAGGCTTTCATTCCTGTAACTACTCCCTAGTTTACTTCGTAGTTAGATGGCTACCGT
ATTGGTTAGATGCAACCGAGTATATGGGAGCCAACATAGCCCAAGCCAGTATCAACCCTACCAGC
CAACCACCTACCAAACTCCAACCCTACCAAATTCCAACCCTACCAAACTCCAACCCTACCAAACT
CCAACCCACCTTCTCGTAATCATACATTTCATTATACACCCACCCGCAACACGTTCTGTCGCTGG
TGGCGGAACCGCACCTGTTCGTGCCGCTCCATAATATACAACGCC
Found at i:47563 original size:16 final size:16
Alignment explanation
Indices: 47542--47607 Score: 123
Period size: 16 Copynumber: 4.1 Consensus size: 16
47532 CAGCCAACCA
47542 CCTACCAAACTCCAAC
1 CCTACCAAACTCCAAC
*
47558 CCTACCAAATTCCAAC
1 CCTACCAAACTCCAAC
47574 CCTACCAAACTCCAAC
1 CCTACCAAACTCCAAC
47590 CCTACCAAACTCCAAC
1 CCTACCAAACTCCAAC
47606 CC
1 CC
47608 ACCTTCTCGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (16 bp):
CCTACCAAACTCCAAC
Left flanking sequence: Indices 47042 -- 47541
AGAAAAAGCCCATCGAGGACCTCGGCCCCTACGTGGACGGGGCGTTGGTGGACAAGCCTGAATCG
CTTGACGACATCTGGGTGAACGGGTTCTCTATCCCATTTGCATAGTAAATAGTCAAGCCAGTGTC
ACATCGCAAATTGTCAAGCCAGTATCACATAGTAAATAGCCTGTTGCGACCCGTCTTCAGGGTCA
GCAAAGGGCTGAAGGCACCGTCGGAGAATTTCTTGTCGTTCTTCGCCAAGGTGGATTTCTTACTC
AGATCGAAGGGTACGAAATGCGGTTATGGAATCAGACGGAGATCTCAATAGTCGGGAGACTCTAT
TCCATACAGTTTAACAGTATCCATGAATGTAGTTTGTGTAACTTACTAAGGCTTTCATTCCTGTA
ACTACTCCCTAGTTTACTTCGTAGTTAGATGGCTACCGTATTGGTTAGATGCAACCGAGTATATG
GGAGCCAACATAGCCCAAGCCAGTATCAACCCTACCAGCCAACCA
Right flanking sequence: Indices 47608 -- 48107
ACCTTCTCGTAATCATACATTTCATTATACACCCACCCGCAACACGTTCTGTCGCTGGTGGCGGA
ACCGCACCTGTTCGTGCCGCTCCATAATATACAACGCCTTGTCCATCACCAGCTGCTCAAACCGC
CCCTGGTCAACCAACTCGCGCTTCAACGTGGCGTACGCCGTCAGCCACCCGAGCGGGAGCCGTCG
GCGGATCTCGTCCTGGGCGCGCTTGATGTCCGCGGTCTCTCCAGCCAGCCCGGCGCCCAGCCCGA
CGCCCTGCTGGACGGCGTCCATCGTCAGCGCGGTGAAAAGGCGGATGGCCTCGTCGGCGTGCTCC
TCGGTGGCCACGGGGGAGAGCGTGAGCTTGGCGAGCGACTCGGTGATCCGCACAATCGCCTCCAA
CTGTCTCACCGTGATCGGAATCAGCGACCGCTCGTTCATGTCCCGCTCGGAGTTCCCGAGATCGC
GGCGGATCTTGACAAAGTGGGTCAGCAACCGGGTGCACGCCTCGG
Found at i:50359 original size:20 final size:20
Alignment explanation
Indices: 50334--50377 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
50324 CCGTGTCTAA
*
50334 CACCATCAAAACCGTCACGT
1 CACCATCAAAACCATCACGT
* *
50354 CACCATCGAAACCATCCCGT
1 CACCATCAAAACCATCACGT
50374 CACC
1 CACC
50378 CTCATCCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.45, G:0.09, T:0.14
Consensus pattern (20 bp):
CACCATCAAAACCATCACGT
Left flanking sequence: Indices 49834 -- 50333
GCACACGCAGACGCGTCGTATGCGCGGGGCTCGCAACGGAATTGTCCCAAACGGGAAGTGTAATG
GGACACGGGTGAGTGTAGTAGGTAGGGAAAGGAGCAGGAGGCTGTAGGTGTCTATTTCACGCTTA
CGCTGTGGTTTACGCCATGAATTGCGTTGTGCTTTACGCCGTGTCCGTTTTGCACGTCGTATTTG
GTAAAGGATGGTGCGTTTGTCTAGCTGGGTTTAGATGGCTGTTGATGCTTTATCCTGCACACAGA
TACTCCTGACTGTTTGTACTAGTGCTAGGCAAGTACGGCGTATATGGAGCCCCGTGGGGTCCGCC
ACCGTGAAAACACCCCTAAATTCCCCTCACTCGCCCATACCGTAGGGTGTTTCACCAGCTGGCGC
CCTGGCCACCCGGTCGCCTCCATATCGACTGGAAACACCGAAATAGTCGTCGGAAACCAGCCGCA
AAACGCGTCGGTAGCCTCTGGTAAGCCACCCATAGCCGTGTCTAA
Right flanking sequence: Indices 50378 -- 50877
CTCATCCCTCACCACAATCCGTCACCATAATCCGTCACCACACCATTTTAGTGCGTTTCACACCC
GCTCGCGGTTTGCAGCCCGCACGCCTCACACATCAGCGCACCACCACCAGAGTACCCCATGTTTC
GCCAGATCCGGTGCCTCACCCAGACCCCGGTCCAGCTCCTCCAGAAACACAAGTACCCTCCCCGA
CCCAAATGGCTCATTGTCGAGGAGGAACTCGAGGAAAAGTTCCTCAAGGGCGGACGCGGCCCCGG
TGGTCAGAAGATCAATAAAACCAACTCCAAGGTGCAATTGACCCACTTGCCCACGGGGACGGTGG
TGACGTGCCAGTACTCGCGGTCGCAAGAGCAAAACCGCAAGCGAGCGCGGGAAATCTTGGCGTTG
AAGCTTGAACAAATCACCAACCCGGAGGGTAACCGCACGACGATCATCCACCAGGCCAAGCTGGC
GGCGAAGGCGAGCAAGGCCAAAAAGAGCGCGAAGAAATACCGGGC
Found at i:50397 original size:13 final size:13
Alignment explanation
Indices: 50381--50419 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
50371 CGTCACCCTC
*
50381 ATCCCTCACCACA
1 ATCCGTCACCACA
*
50394 ATCCGTCACCATA
1 ATCCGTCACCACA
50407 ATCCGTCACCACA
1 ATCCGTCACCACA
50420 CCATTTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.46, G:0.05, T:0.18
Consensus pattern (13 bp):
ATCCGTCACCACA
Left flanking sequence: Indices 49881 -- 50380
CAAACGGGAAGTGTAATGGGACACGGGTGAGTGTAGTAGGTAGGGAAAGGAGCAGGAGGCTGTAG
GTGTCTATTTCACGCTTACGCTGTGGTTTACGCCATGAATTGCGTTGTGCTTTACGCCGTGTCCG
TTTTGCACGTCGTATTTGGTAAAGGATGGTGCGTTTGTCTAGCTGGGTTTAGATGGCTGTTGATG
CTTTATCCTGCACACAGATACTCCTGACTGTTTGTACTAGTGCTAGGCAAGTACGGCGTATATGG
AGCCCCGTGGGGTCCGCCACCGTGAAAACACCCCTAAATTCCCCTCACTCGCCCATACCGTAGGG
TGTTTCACCAGCTGGCGCCCTGGCCACCCGGTCGCCTCCATATCGACTGGAAACACCGAAATAGT
CGTCGGAAACCAGCCGCAAAACGCGTCGGTAGCCTCTGGTAAGCCACCCATAGCCGTGTCTAACA
CCATCAAAACCGTCACGTCACCATCGAAACCATCCCGTCACCCTC
Right flanking sequence: Indices 50420 -- 50919
CCATTTTAGTGCGTTTCACACCCGCTCGCGGTTTGCAGCCCGCACGCCTCACACATCAGCGCACC
ACCACCAGAGTACCCCATGTTTCGCCAGATCCGGTGCCTCACCCAGACCCCGGTCCAGCTCCTCC
AGAAACACAAGTACCCTCCCCGACCCAAATGGCTCATTGTCGAGGAGGAACTCGAGGAAAAGTTC
CTCAAGGGCGGACGCGGCCCCGGTGGTCAGAAGATCAATAAAACCAACTCCAAGGTGCAATTGAC
CCACTTGCCCACGGGGACGGTGGTGACGTGCCAGTACTCGCGGTCGCAAGAGCAAAACCGCAAGC
GAGCGCGGGAAATCTTGGCGTTGAAGCTTGAACAAATCACCAACCCGGAGGGTAACCGCACGACG
ATCATCCACCAGGCCAAGCTGGCGGCGAAGGCGAGCAAGGCCAAAAAGAGCGCGAAGAAATACCG
GGCACTCGCCGATGCGAAAGCCCAGGAGCCTGAGCCCGAGCCCGA
Found at i:50401 original size:26 final size:26
Alignment explanation
Indices: 50370--50419 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
50360 CGAAACCATC
* *
50370 CCGTCACCCTCATCCCTCACCACAAT
1 CCGTCACCATAATCCCTCACCACAAT
*
50396 CCGTCACCATAATCCGTCACCACA
1 CCGTCACCATAATCCCTCACCACA
50420 CCATTTTAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (26 bp):
CCGTCACCATAATCCCTCACCACAAT
Left flanking sequence: Indices 49870 -- 50369
CGGAATTGTCCCAAACGGGAAGTGTAATGGGACACGGGTGAGTGTAGTAGGTAGGGAAAGGAGCA
GGAGGCTGTAGGTGTCTATTTCACGCTTACGCTGTGGTTTACGCCATGAATTGCGTTGTGCTTTA
CGCCGTGTCCGTTTTGCACGTCGTATTTGGTAAAGGATGGTGCGTTTGTCTAGCTGGGTTTAGAT
GGCTGTTGATGCTTTATCCTGCACACAGATACTCCTGACTGTTTGTACTAGTGCTAGGCAAGTAC
GGCGTATATGGAGCCCCGTGGGGTCCGCCACCGTGAAAACACCCCTAAATTCCCCTCACTCGCCC
ATACCGTAGGGTGTTTCACCAGCTGGCGCCCTGGCCACCCGGTCGCCTCCATATCGACTGGAAAC
ACCGAAATAGTCGTCGGAAACCAGCCGCAAAACGCGTCGGTAGCCTCTGGTAAGCCACCCATAGC
CGTGTCTAACACCATCAAAACCGTCACGTCACCATCGAAACCATC
Right flanking sequence: Indices 50420 -- 50919
CCATTTTAGTGCGTTTCACACCCGCTCGCGGTTTGCAGCCCGCACGCCTCACACATCAGCGCACC
ACCACCAGAGTACCCCATGTTTCGCCAGATCCGGTGCCTCACCCAGACCCCGGTCCAGCTCCTCC
AGAAACACAAGTACCCTCCCCGACCCAAATGGCTCATTGTCGAGGAGGAACTCGAGGAAAAGTTC
CTCAAGGGCGGACGCGGCCCCGGTGGTCAGAAGATCAATAAAACCAACTCCAAGGTGCAATTGAC
CCACTTGCCCACGGGGACGGTGGTGACGTGCCAGTACTCGCGGTCGCAAGAGCAAAACCGCAAGC
GAGCGCGGGAAATCTTGGCGTTGAAGCTTGAACAAATCACCAACCCGGAGGGTAACCGCACGACG
ATCATCCACCAGGCCAAGCTGGCGGCGAAGGCGAGCAAGGCCAAAAAGAGCGCGAAGAAATACCG
GGCACTCGCCGATGCGAAAGCCCAGGAGCCTGAGCCCGAGCCCGA
Found at i:58774 original size:10 final size:10
Alignment explanation
Indices: 58758--58794 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
58748 CGGGAGAGCC
58758 AGAGACAGCTG
1 AGAGACAGC-G
58769 -GAGACAGCG
1 AGAGACAGCG
58778 AGAGACAGCG
1 AGAGACAGCG
58788 AGAGACA
1 AGAGACA
58795 TGTCGCAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 1 0.04
10 24 0.96
ACGTcount: A:0.41, C:0.19, G:0.38, T:0.03
Consensus pattern (10 bp):
AGAGACAGCG
Left flanking sequence: Indices 58258 -- 58757
GTGCTGTTCCGACTCGGGCCGGGTGCGTCGGAGCTCAGATACGGGCGCGTTACCGTTGCAGCGAT
GGCAACGCGGTTGTGGCTGCGAGATCTACGAAAACTGTGGCGGGGCTGACAAAGCAGGCCGAAGG
GGTGTAGTGGTGGCAAAAACGGGCTGTCAACACCGGAGAAATCGACCGCTGGGGTCTTGGGGTCG
CCGCGTTCGCCTCGGCAGCCATTGACCCCGTGGGCTCGCTCTGACGGAAGCTTATGTCCGAGTCA
CGTGCAATTTCACAATTTCAGGTATGCGCAACGCTCGCAACGGGACGATGGGCTCATGTTGGCCA
TGACCTTGGCGGTTAGGTGTGGAAGCCAAAAGCAATGTGACACGAAGGCGTGTTGACTAATGTGT
AGGGCGCGTGGCGCCACTCGAGTTACGTGGGTTAGCCAAGAGATTGGTGTGAGTCAGTGAATAGG
GGTATTGTAGGCAGAGGACGGTGAAAGCGATCACACGGGAGAGCC
Right flanking sequence: Indices 58795 -- 59294
TGTCGCAGTGGCGAGACTTGTTGCCTGACCTTCCCCTCACGCCGTCCCATGACTGGCTCACGGAC
ACGCAGTGGTCAGGGCCACCTGACGCCCGTTTCTTTTGTTCGGATTGGGCTTGATTATAATTGGG
ACGGCAGTGGTGTAGGTCGTATAGCAAGAGAGCAGGTGGAATCAGGTGGCGATAGCGGTGGCGAT
AGCGGTGTAGGAATTGAGAGGGCGGTAGCGTACGGGTAGCCTAGCGACCACTCCAATGCCATTGG
GTGTAGAATTCACCCTGAAACACTGTTTTCTTAGCATTCTCGTCTACGGTACTTTTGCAACCACA
TTTGGCATTTCGTCAACACCGCCTGAAGCCAGCGCGTGTAGTGGCTATTCGTAACAAGCCAAGGA
ATGAGGTATAGGGGCGTGACACGTGAGCTGTGGCCCTGTGGTCGTAACTGTCAATGAAACACGTT
GCTGTGACCCTGTGGTCGTAACTGTCCGTGAAGCACGTTGTTTAT
Found at i:58986 original size:12 final size:12
Alignment explanation
Indices: 58969--58996 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
58959 GGTGGAATCA
58969 GGTGGCGATAGC
1 GGTGGCGATAGC
58981 GGTGGCGATAGC
1 GGTGGCGATAGC
58993 GGTG
1 GGTG
58997 TAGGAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.54, T:0.18
Consensus pattern (12 bp):
GGTGGCGATAGC
Left flanking sequence: Indices 58469 -- 58968
AGCCATTGACCCCGTGGGCTCGCTCTGACGGAAGCTTATGTCCGAGTCACGTGCAATTTCACAAT
TTCAGGTATGCGCAACGCTCGCAACGGGACGATGGGCTCATGTTGGCCATGACCTTGGCGGTTAG
GTGTGGAAGCCAAAAGCAATGTGACACGAAGGCGTGTTGACTAATGTGTAGGGCGCGTGGCGCCA
CTCGAGTTACGTGGGTTAGCCAAGAGATTGGTGTGAGTCAGTGAATAGGGGTATTGTAGGCAGAG
GACGGTGAAAGCGATCACACGGGAGAGCCAGAGACAGCTGGAGACAGCGAGAGACAGCGAGAGAC
ATGTCGCAGTGGCGAGACTTGTTGCCTGACCTTCCCCTCACGCCGTCCCATGACTGGCTCACGGA
CACGCAGTGGTCAGGGCCACCTGACGCCCGTTTCTTTTGTTCGGATTGGGCTTGATTATAATTGG
GACGGCAGTGGTGTAGGTCGTATAGCAAGAGAGCAGGTGGAATCA
Right flanking sequence: Indices 58997 -- 59496
TAGGAATTGAGAGGGCGGTAGCGTACGGGTAGCCTAGCGACCACTCCAATGCCATTGGGTGTAGA
ATTCACCCTGAAACACTGTTTTCTTAGCATTCTCGTCTACGGTACTTTTGCAACCACATTTGGCA
TTTCGTCAACACCGCCTGAAGCCAGCGCGTGTAGTGGCTATTCGTAACAAGCCAAGGAATGAGGT
ATAGGGGCGTGACACGTGAGCTGTGGCCCTGTGGTCGTAACTGTCAATGAAACACGTTGCTGTGA
CCCTGTGGTCGTAACTGTCCGTGAAGCACGTTGTTTATGGCTCATGGTCTTAGTTGACTTAGTTT
ATGTCCCGTGGTTATGCTTTCTCGTATCATTACTCTTATCGTATCTACCGTTGCGAGATGCTGGC
CAAGAGCTCGGCGTCGTCGTCGGAGAACGGGTCTGGCGACCCGGGAGCCCCACCCTTGTTTCTCG
CCTCGTTCTCCTGCTCAAACGCCATCTGCTCGATATCCAGCGGGA
Found at i:59261 original size:39 final size:39
Alignment explanation
Indices: 59211--59289 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
59201 TGACACGTGA
*
59211 GCTGTGGCCCTGTGGTCGTAACTGTCAATGAAACACGTT
1 GCTGTGACCCTGTGGTCGTAACTGTCAATGAAACACGTT
** *
59250 GCTGTGACCCTGTGGTCGTAACTGTCCGTGAAGCACGTT
1 GCTGTGACCCTGTGGTCGTAACTGTCAATGAAACACGTT
59289 G
1 G
59290 TTTATGGCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.18, C:0.24, G:0.30, T:0.28
Consensus pattern (39 bp):
GCTGTGACCCTGTGGTCGTAACTGTCAATGAAACACGTT
Left flanking sequence: Indices 58711 -- 59210
GGGGTATTGTAGGCAGAGGACGGTGAAAGCGATCACACGGGAGAGCCAGAGACAGCTGGAGACAG
CGAGAGACAGCGAGAGACATGTCGCAGTGGCGAGACTTGTTGCCTGACCTTCCCCTCACGCCGTC
CCATGACTGGCTCACGGACACGCAGTGGTCAGGGCCACCTGACGCCCGTTTCTTTTGTTCGGATT
GGGCTTGATTATAATTGGGACGGCAGTGGTGTAGGTCGTATAGCAAGAGAGCAGGTGGAATCAGG
TGGCGATAGCGGTGGCGATAGCGGTGTAGGAATTGAGAGGGCGGTAGCGTACGGGTAGCCTAGCG
ACCACTCCAATGCCATTGGGTGTAGAATTCACCCTGAAACACTGTTTTCTTAGCATTCTCGTCTA
CGGTACTTTTGCAACCACATTTGGCATTTCGTCAACACCGCCTGAAGCCAGCGCGTGTAGTGGCT
ATTCGTAACAAGCCAAGGAATGAGGTATAGGGGCGTGACACGTGA
Right flanking sequence: Indices 59290 -- 59789
TTTATGGCTCATGGTCTTAGTTGACTTAGTTTATGTCCCGTGGTTATGCTTTCTCGTATCATTAC
TCTTATCGTATCTACCGTTGCGAGATGCTGGCCAAGAGCTCGGCGTCGTCGTCGGAGAACGGGTC
TGGCGACCCGGGAGCCCCACCCTTGTTTCTCGCCTCGTTCTCCTGCTCAAACGCCATCTGCTCGA
TATCCAGCGGGATCTCTTCGTCCTCCTCCCGGTGGCCCGCGTCCTCCATTTCCGGAGGAACCTCC
TCCTCGCGTGGAGGCTCCACACGCGTCTCCGTCTGCCTACGCGTCGCCGTCTCCATACGCGTCGC
CGTCTCCACACGCGTTTCACGCGTCTCGGGCTCGTCGTGGCCTTCCTCGCCAACAAAGAGCGCCA
GCTCCATGAACGCAAAGTCGTCTGGCGCCACGTAGTCCTCCTCCGCCGCCTCCGGGGCGTCTTCT
GTAGTCTCCACCTCCATCTCCACCCCCTCCTCGGGCTCAGGGGCC
Found at i:59593 original size:18 final size:18
Alignment explanation
Indices: 59564--59629 Score: 89
Period size: 18 Copynumber: 3.7 Consensus size: 18
59554 CGCGTGGAGG
* *
59564 CTCCACACGCGTCTCCGT
1 CTCCATACGCGTCGCCGT
59582 CTGCC-TACGCGTCGCCGT
1 CT-CCATACGCGTCGCCGT
59600 CTCCATACGCGTCGCCGT
1 CTCCATACGCGTCGCCGT
*
59618 CTCCACACGCGT
1 CTCCATACGCGT
59630 TTCACGCGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 2 0.05
18 39 0.91
19 2 0.05
ACGTcount: A:0.11, C:0.47, G:0.21, T:0.21
Consensus pattern (18 bp):
CTCCATACGCGTCGCCGT
Left flanking sequence: Indices 59064 -- 59563
TCACCCTGAAACACTGTTTTCTTAGCATTCTCGTCTACGGTACTTTTGCAACCACATTTGGCATT
TCGTCAACACCGCCTGAAGCCAGCGCGTGTAGTGGCTATTCGTAACAAGCCAAGGAATGAGGTAT
AGGGGCGTGACACGTGAGCTGTGGCCCTGTGGTCGTAACTGTCAATGAAACACGTTGCTGTGACC
CTGTGGTCGTAACTGTCCGTGAAGCACGTTGTTTATGGCTCATGGTCTTAGTTGACTTAGTTTAT
GTCCCGTGGTTATGCTTTCTCGTATCATTACTCTTATCGTATCTACCGTTGCGAGATGCTGGCCA
AGAGCTCGGCGTCGTCGTCGGAGAACGGGTCTGGCGACCCGGGAGCCCCACCCTTGTTTCTCGCC
TCGTTCTCCTGCTCAAACGCCATCTGCTCGATATCCAGCGGGATCTCTTCGTCCTCCTCCCGGTG
GCCCGCGTCCTCCATTTCCGGAGGAACCTCCTCCTCGCGTGGAGG
Right flanking sequence: Indices 59630 -- 60129
TTCACGCGTCTCGGGCTCGTCGTGGCCTTCCTCGCCAACAAAGAGCGCCAGCTCCATGAACGCAA
AGTCGTCTGGCGCCACGTAGTCCTCCTCCGCCGCCTCCGGGGCGTCTTCTGTAGTCTCCACCTCC
ATCTCCACCCCCTCCTCGGGCTCAGGGGCCTGGCTCCCGTCGTGGCCCGGCTGGGTGGGCGCGAT
GAGCAGCACCTCCAGCTCGTCCATCAACCCGGCCGCCACCTTGGCCTTGTTGAGCTCGTAGTCGA
CCAAATGGCGCCGCCAGAGCCGGGTCCGCGCCAGTTTCGCCCCGAGCTGGCGCACCATGGCGATG
CAGTCGCCAAACTGGGCCTTGGGGAAGAGCCCGTGGCACCAGAGGTGGTAGAAATCAAGCACCGA
CCCGAGGTTTTCGAACTCGCGGTCGGCCTTGGACTGGGTCAGCCGCCGGTCGTGGTGGCGGAGCT
TTTTGGACACGCGCGGGTGGTTTTTGAGCACGTACGACACCCCCG
Found at i:60823 original size:16 final size:16
Alignment explanation
Indices: 60804--60851 Score: 71
Period size: 16 Copynumber: 3.0 Consensus size: 16
60794 ACACCAAAAT
60804 TCAC-CTACACACCACC
1 TCACTCTACAC-CCACC
*
60820 TCACTCTACACCCATC
1 TCACTCTACACCCACC
60836 TCACTCTACACCCACC
1 TCACTCTACACCCACC
60852 AATACCCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 23 0.79
17 6 0.21
ACGTcount: A:0.27, C:0.54, G:0.00, T:0.19
Consensus pattern (16 bp):
TCACTCTACACCCACC
Left flanking sequence: Indices 60304 -- 60803
GGTTGTTTTGTGGTTCGCTTGGGCCTGGGCTGGGTGGTGGTGGTGTGGTGGTGGTTTAGATGTGG
TAGATGTTCCGAATCGGGTAACCGCCGCGACGCGTCGAAAAAAGACGTGTAGGAGAGATAGACAG
AGGGAGGTTGGAATGGTTGCTCGGAACAAATGGAACGGTAAGAGGGTGATATTGAGTGACGTAGA
ATCAGATAGTAGAACAAGACATAGTAAAAGCAGATAGTAGAACAGGATATAAAATTTATTGAATC
ATCAAGTCACAAAAGTTTACTAGTGACAGTGATTTAAGGTAGGCTCCACTTCTAGAAGCTATTAC
CAGGGATTACTTTCTTAATCAGTTCATCCTGTTCATACCTATTTCACACCAATTCACCTGCCTCA
CAACTCCTACCCCGCTCTGTGACACATCACATTTCCTCACTCTTGTAGTCACACTATCAGTCTCA
CCCATCCTCCACAAAACACAACCTAAATTTATTCTACACCAAAAT
Right flanking sequence: Indices 60852 -- 61351
AATACCCCACTCTCCACACCCCCAACTTCCTCTCCTCTTCTCATCACTCGCCCTCTGCTACGCGT
CGCGACGCGTTGTTTACGTGCGCACGCCGCACATCGCACCTAAATCACTCTAGCACACAAGCACA
CCAGCACCAGACCAGCACACCAGCACCACCAGCACCAGACATGAAACCGTTGTGGCAGCGACACC
AGAACGTGCCGGTGCCCATCTACCTGCTGGACGTCGAGTTCGACGACCCCGAGCTGCTGTTCCAC
CCACACCCGGACCGGCGGCACGCCACCACCACCACCGTGGCCCCGAAGGCGGTGCCCCAGGACTT
CCTCGGGGTCAGCGCCCAGCAGCTGGCCATCGACGAGAAGAACGAGCAGATCATGATGTTGCTGA
CCAAGCTCTACGCCCTCGAGCACGTGGGCGACCTGCGCGACGACCTCCGCCAGGCGTACGCCCGC
ACCATGGACGAGCTCCGCAAGCACCAGCTCCGGTTCGACGAGCTC
Found at i:60997 original size:11 final size:9
Alignment explanation
Indices: 60976--61018 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
60966 CTAGCACACA
60976 AGCA-CACC
1 AGCACCACC
60984 AGCACCAGACC
1 AGCACC--ACC
60995 AGCA-CACC
1 AGCACCACC
61003 AGCACCACC
1 AGCACCACC
61012 AGCACCA
1 AGCACCA
61019 GACATGAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 11 0.35
9 12 0.39
10 1 0.03
11 7 0.23
ACGTcount: A:0.37, C:0.49, G:0.14, T:0.00
Consensus pattern (9 bp):
AGCACCACC
Left flanking sequence: Indices 60476 -- 60975
AGGGTGATATTGAGTGACGTAGAATCAGATAGTAGAACAAGACATAGTAAAAGCAGATAGTAGAA
CAGGATATAAAATTTATTGAATCATCAAGTCACAAAAGTTTACTAGTGACAGTGATTTAAGGTAG
GCTCCACTTCTAGAAGCTATTACCAGGGATTACTTTCTTAATCAGTTCATCCTGTTCATACCTAT
TTCACACCAATTCACCTGCCTCACAACTCCTACCCCGCTCTGTGACACATCACATTTCCTCACTC
TTGTAGTCACACTATCAGTCTCACCCATCCTCCACAAAACACAACCTAAATTTATTCTACACCAA
AATTCACCTACACACCACCTCACTCTACACCCATCTCACTCTACACCCACCAATACCCCACTCTC
CACACCCCCAACTTCCTCTCCTCTTCTCATCACTCGCCCTCTGCTACGCGTCGCGACGCGTTGTT
TACGTGCGCACGCCGCACATCGCACCTAAATCACTCTAGCACACA
Right flanking sequence: Indices 61019 -- 61518
GACATGAAACCGTTGTGGCAGCGACACCAGAACGTGCCGGTGCCCATCTACCTGCTGGACGTCGA
GTTCGACGACCCCGAGCTGCTGTTCCACCCACACCCGGACCGGCGGCACGCCACCACCACCACCG
TGGCCCCGAAGGCGGTGCCCCAGGACTTCCTCGGGGTCAGCGCCCAGCAGCTGGCCATCGACGAG
AAGAACGAGCAGATCATGATGTTGCTGACCAAGCTCTACGCCCTCGAGCACGTGGGCGACCTGCG
CGACGACCTCCGCCAGGCGTACGCCCGCACCATGGACGAGCTCCGCAAGCACCAGCTCCGGTTCG
ACGAGCTCAACAAGGAGAACCCGCTGTTGTTGGAGACCGAGGCGCTCCGGCGCCAGGTGGCGGCG
CTCCAGGGGGAGCTCGAGGCCGCGCGCGCCCACGCCGCCCGCGCCGAGCGCCAGGGGGCGGCGCG
CGCAGAGGAGGCCCGCCGCGAGGCGCGGGAGGAGGCCCAGCGCGC
Found at i:61003 original size:8 final size:8
Alignment explanation
Indices: 60968--61016 Score: 53
Period size: 8 Copynumber: 5.6 Consensus size: 8
60958 AAATCACTCT
*
60968 AGCACACA
1 AGCACACC
60976 AGCACACC
1 AGCACACC
60984 AGCACCAGACC
1 AGCA-C--ACC
60995 AGCACACC
1 AGCACACC
61003 AGCACCACC
1 AGCA-CACC
61012 AGCAC
1 AGCAC
61017 CAGACATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 19 0.53
9 9 0.25
10 1 0.03
11 7 0.19
ACGTcount: A:0.39, C:0.47, G:0.14, T:0.00
Consensus pattern (8 bp):
AGCACACC
Left flanking sequence: Indices 60468 -- 60967
ACGGTAAGAGGGTGATATTGAGTGACGTAGAATCAGATAGTAGAACAAGACATAGTAAAAGCAGA
TAGTAGAACAGGATATAAAATTTATTGAATCATCAAGTCACAAAAGTTTACTAGTGACAGTGATT
TAAGGTAGGCTCCACTTCTAGAAGCTATTACCAGGGATTACTTTCTTAATCAGTTCATCCTGTTC
ATACCTATTTCACACCAATTCACCTGCCTCACAACTCCTACCCCGCTCTGTGACACATCACATTT
CCTCACTCTTGTAGTCACACTATCAGTCTCACCCATCCTCCACAAAACACAACCTAAATTTATTC
TACACCAAAATTCACCTACACACCACCTCACTCTACACCCATCTCACTCTACACCCACCAATACC
CCACTCTCCACACCCCCAACTTCCTCTCCTCTTCTCATCACTCGCCCTCTGCTACGCGTCGCGAC
GCGTTGTTTACGTGCGCACGCCGCACATCGCACCTAAATCACTCT
Right flanking sequence: Indices 61017 -- 61516
CAGACATGAAACCGTTGTGGCAGCGACACCAGAACGTGCCGGTGCCCATCTACCTGCTGGACGTC
GAGTTCGACGACCCCGAGCTGCTGTTCCACCCACACCCGGACCGGCGGCACGCCACCACCACCAC
CGTGGCCCCGAAGGCGGTGCCCCAGGACTTCCTCGGGGTCAGCGCCCAGCAGCTGGCCATCGACG
AGAAGAACGAGCAGATCATGATGTTGCTGACCAAGCTCTACGCCCTCGAGCACGTGGGCGACCTG
CGCGACGACCTCCGCCAGGCGTACGCCCGCACCATGGACGAGCTCCGCAAGCACCAGCTCCGGTT
CGACGAGCTCAACAAGGAGAACCCGCTGTTGTTGGAGACCGAGGCGCTCCGGCGCCAGGTGGCGG
CGCTCCAGGGGGAGCTCGAGGCCGCGCGCGCCCACGCCGCCCGCGCCGAGCGCCAGGGGGCGGCG
CGCGCAGAGGAGGCCCGCCGCGAGGCGCGGGAGGAGGCCCAGCGC
Found at i:61507 original size:24 final size:24
Alignment explanation
Indices: 61478--61524 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
61468 GGCGCGCGCA
61478 GAGGAGGCCC-GCCGCGAGGCGCGG
1 GAGGAGGCCCAG-CGCGAGGCGCGG
*
61502 GAGGAGGCCCAGCGCGCGGCGCG
1 GAGGAGGCCCAGCGCGAGGCGCG
61525 CGACGCCCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.13, C:0.34, G:0.53, T:0.00
Consensus pattern (24 bp):
GAGGAGGCCCAGCGCGAGGCGCGG
Left flanking sequence: Indices 60978 -- 61477
CACACCAGCACCAGACCAGCACACCAGCACCACCAGCACCAGACATGAAACCGTTGTGGCAGCGA
CACCAGAACGTGCCGGTGCCCATCTACCTGCTGGACGTCGAGTTCGACGACCCCGAGCTGCTGTT
CCACCCACACCCGGACCGGCGGCACGCCACCACCACCACCGTGGCCCCGAAGGCGGTGCCCCAGG
ACTTCCTCGGGGTCAGCGCCCAGCAGCTGGCCATCGACGAGAAGAACGAGCAGATCATGATGTTG
CTGACCAAGCTCTACGCCCTCGAGCACGTGGGCGACCTGCGCGACGACCTCCGCCAGGCGTACGC
CCGCACCATGGACGAGCTCCGCAAGCACCAGCTCCGGTTCGACGAGCTCAACAAGGAGAACCCGC
TGTTGTTGGAGACCGAGGCGCTCCGGCGCCAGGTGGCGGCGCTCCAGGGGGAGCTCGAGGCCGCG
CGCGCCCACGCCGCCCGCGCCGAGCGCCAGGGGGCGGCGCGCGCA
Right flanking sequence: Indices 61525 -- 62024
CGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGGCCGAGCGCGCGGTGGCGGGGGTGC
GGCGCGACGCGGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCG
CGGGAGGAGGCCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGCGGAGGAGGCCCAGCGGCGCGC
GGAGGAGGCCACCCGCCAGGCAGAGGAGGCCACTCGCCAAGCGGAGGAGGCCACTCGGGCCAAAG
AAGCGGCCATGCGCCAGGCAAAGGAGGCCACCAGAGCCAAGGACGACGCGCTCGCCGAGGTGGCC
CGGCTCCGGCGCCAGCACACCGACGCGGTGCTGGCGCTGGCGGAGGTCGACCGGCTCGGGCGCGA
GCTCGCGGCGCTGCGCCAGCGGGTCGGGGCGCTCGAGAAGGAGGCGGCCCGGATGGCGAGCCAGT
GGGCGCACCACCAGGAGACGGCCGCGGCCAGCGACACCACCGCCA
Found at i:61606 original size:99 final size:99
Alignment explanation
Indices: 61501--61718 Score: 427
Period size: 99 Copynumber: 2.2 Consensus size: 99
61491 GCGAGGCGCG
61501 GGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGG
1 GGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGG
61566 CCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGC
66 CCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGC
61600 GGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGG
1 GGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGG
61665 CCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGC
66 CCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGC
61699 GGAGGAGGCCCAGCGGCGCG
1 GGAGGAGGCCCAGC-GCGCG
61719 CGGAGGAGGC
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 113 0.96
100 5 0.04
ACGTcount: A:0.14, C:0.33, G:0.51, T:0.02
Consensus pattern (99 bp):
GGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGG
CCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGC
Left flanking sequence: Indices 61001 -- 61500
CCAGCACCACCAGCACCAGACATGAAACCGTTGTGGCAGCGACACCAGAACGTGCCGGTGCCCAT
CTACCTGCTGGACGTCGAGTTCGACGACCCCGAGCTGCTGTTCCACCCACACCCGGACCGGCGGC
ACGCCACCACCACCACCGTGGCCCCGAAGGCGGTGCCCCAGGACTTCCTCGGGGTCAGCGCCCAG
CAGCTGGCCATCGACGAGAAGAACGAGCAGATCATGATGTTGCTGACCAAGCTCTACGCCCTCGA
GCACGTGGGCGACCTGCGCGACGACCTCCGCCAGGCGTACGCCCGCACCATGGACGAGCTCCGCA
AGCACCAGCTCCGGTTCGACGAGCTCAACAAGGAGAACCCGCTGTTGTTGGAGACCGAGGCGCTC
CGGCGCCAGGTGGCGGCGCTCCAGGGGGAGCTCGAGGCCGCGCGCGCCCACGCCGCCCGCGCCGA
GCGCCAGGGGGCGGCGCGCGCAGAGGAGGCCCGCCGCGAGGCGCG
Right flanking sequence: Indices 61719 -- 62218
CGGAGGAGGCCACCCGCCAGGCAGAGGAGGCCACTCGCCAAGCGGAGGAGGCCACTCGGGCCAAA
GAAGCGGCCATGCGCCAGGCAAAGGAGGCCACCAGAGCCAAGGACGACGCGCTCGCCGAGGTGGC
CCGGCTCCGGCGCCAGCACACCGACGCGGTGCTGGCGCTGGCGGAGGTCGACCGGCTCGGGCGCG
AGCTCGCGGCGCTGCGCCAGCGGGTCGGGGCGCTCGAGAAGGAGGCGGCCCGGATGGCGAGCCAG
TGGGCGCACCACCAGGAGACGGCCGCGGCCAGCGACACCACCGCCAAGCGCGAGGCGGTGCGGCT
CGAGGGCGAGACCGCGCGGTTGCGGGTGGAGGTGACCCAGTGGGAGAGCCAGGCGGCGCAGGCAC
GGCGCCGGCTCGAGGGGGAGGCGGCCCAGCGGGCGGAGGCGGAGACGAAGCTTCGAGGGGTTGAG
GCGAAGCTCCGGGGGGTGGAGGGGAAGCTCCGCGAGAAGGAGGGG
Found at i:61774 original size:21 final size:21
Alignment explanation
Indices: 61718--61776 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
61708 CCAGCGGCGC
* *
61718 GCGGAGGAGGCCACCCGCCAG
1 GCGGAGGAGGCCACTCGCCAA
*
61739 GCAGAGGAGGCCACTCGCCAA
1 GCGGAGGAGGCCACTCGCCAA
61760 GCGGAGGAGGCCACTCG
1 GCGGAGGAGGCCACTCG
61777 GGCCAAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.22, C:0.34, G:0.41, T:0.03
Consensus pattern (21 bp):
GCGGAGGAGGCCACTCGCCAA
Left flanking sequence: Indices 61218 -- 61717
ACGAGCAGATCATGATGTTGCTGACCAAGCTCTACGCCCTCGAGCACGTGGGCGACCTGCGCGAC
GACCTCCGCCAGGCGTACGCCCGCACCATGGACGAGCTCCGCAAGCACCAGCTCCGGTTCGACGA
GCTCAACAAGGAGAACCCGCTGTTGTTGGAGACCGAGGCGCTCCGGCGCCAGGTGGCGGCGCTCC
AGGGGGAGCTCGAGGCCGCGCGCGCCCACGCCGCCCGCGCCGAGCGCCAGGGGGCGGCGCGCGCA
GAGGAGGCCCGCCGCGAGGCGCGGGAGGAGGCCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACA
GGCGCACCAGGCGCGGGAGGAGGCCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGCGGAGGAGG
CCCAGCGCGCGGCGCGCGACGCCCAGCGCGAACAGGCGCACCAGGCGCGGGAGGAGGCCGAGCGC
GCGGTGGCGGGGGTGCGGCGCGACGCGGAGGAGGCCCAGCGGCGC
Right flanking sequence: Indices 61777 -- 62276
GGCCAAAGAAGCGGCCATGCGCCAGGCAAAGGAGGCCACCAGAGCCAAGGACGACGCGCTCGCCG
AGGTGGCCCGGCTCCGGCGCCAGCACACCGACGCGGTGCTGGCGCTGGCGGAGGTCGACCGGCTC
GGGCGCGAGCTCGCGGCGCTGCGCCAGCGGGTCGGGGCGCTCGAGAAGGAGGCGGCCCGGATGGC
GAGCCAGTGGGCGCACCACCAGGAGACGGCCGCGGCCAGCGACACCACCGCCAAGCGCGAGGCGG
TGCGGCTCGAGGGCGAGACCGCGCGGTTGCGGGTGGAGGTGACCCAGTGGGAGAGCCAGGCGGCG
CAGGCACGGCGCCGGCTCGAGGGGGAGGCGGCCCAGCGGGCGGAGGCGGAGACGAAGCTTCGAGG
GGTTGAGGCGAAGCTCCGGGGGGTGGAGGGGAAGCTCCGCGAGAAGGAGGGGAAGCTCCGCGAAA
AGGAGGGGAAGCTCCGGGAGTCGGAGGCCCAGCGAGAGAAGGCAG
Found at i:62178 original size:21 final size:21
Alignment explanation
Indices: 62149--62205 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
62139 GGGCGGAGGC
* *
62149 GGAGACGAAGCTTCGAGGGGT
1 GGAGGCGAAGCTCCGAGGGGT
* *
62170 TGAGGCGAAGCTCCGGGGGGT
1 GGAGGCGAAGCTCCGAGGGGT
*
62191 GGAGGGGAAGCTCCG
1 GGAGGCGAAGCTCCG
62206 CGAGAAGGAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.19, C:0.18, G:0.51, T:0.12
Consensus pattern (21 bp):
GGAGGCGAAGCTCCGAGGGGT
Left flanking sequence: Indices 61649 -- 62148
CAGGCGCGGGAGGAGGCCGAGCGCGCGGTGGCGGGGGTGCGGCGCGACGCGGAGGAGGCCCAGCG
GCGCGCGGAGGAGGCCACCCGCCAGGCAGAGGAGGCCACTCGCCAAGCGGAGGAGGCCACTCGGG
CCAAAGAAGCGGCCATGCGCCAGGCAAAGGAGGCCACCAGAGCCAAGGACGACGCGCTCGCCGAG
GTGGCCCGGCTCCGGCGCCAGCACACCGACGCGGTGCTGGCGCTGGCGGAGGTCGACCGGCTCGG
GCGCGAGCTCGCGGCGCTGCGCCAGCGGGTCGGGGCGCTCGAGAAGGAGGCGGCCCGGATGGCGA
GCCAGTGGGCGCACCACCAGGAGACGGCCGCGGCCAGCGACACCACCGCCAAGCGCGAGGCGGTG
CGGCTCGAGGGCGAGACCGCGCGGTTGCGGGTGGAGGTGACCCAGTGGGAGAGCCAGGCGGCGCA
GGCACGGCGCCGGCTCGAGGGGGAGGCGGCCCAGCGGGCGGAGGC
Right flanking sequence: Indices 62206 -- 62705
CGAGAAGGAGGGGAAGCTCCGCGAAAAGGAGGGGAAGCTCCGGGAGTCGGAGGCCCAGCGAGAGA
AGGCAGAGGCCCGGGCGGAGGCGGCTGAGAAAGCCAACAAGAGCCTGACCCAGGCCATTGACTCC
CTTCAGACGCCAGCACGGGCCCGCGACGGGTGGAAGGACCAGTGCCGCCAGGCGGAGGCCGAGGC
CCGGCGGATGCGCCAGAGCCTCAGCGACGCCCGGGCCGAGGCAGAGCGGGAGCGGGCGGCGTTGG
AGGACCAGCTCCGGGCCAGCCAGCGCGAGGTGGCGGCTCTCAAGGCGTCCCAGCGGCTGGCGACG
GACCCACGGGCGGTCTCCGAGCTCAAGCGGAGCCTCGAGCGGGCCCGCGAGCGGGTGGCCGAGCT
CGAGCTCGAGGCGAGAGCCAAGAGCAGGGGAGAGAGAGAGCTGGAGAGTGCGCTGGGCCCGCTCC
GCAGCCAGGTGGCCCGGTTGGAAGAGGAGCTCGCGGTGAAGCAGC
Found at i:62258 original size:21 final size:21
Alignment explanation
Indices: 62191--62247 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
62181 TCCGGGGGGT
62191 GGAGGGGAAGCTCCGCGAGAA
1 GGAGGGGAAGCTCCGCGAGAA
*
62212 GGAGGGGAAGCTCCGCGAAAA
1 GGAGGGGAAGCTCCGCGAGAA
62233 GGAGGGGAAGCTCCG
1 GGAGGGGAAGCTCCG
62248 GGAGTCGGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.28, C:0.19, G:0.47, T:0.05
Consensus pattern (21 bp):
GGAGGGGAAGCTCCGCGAGAA
Left flanking sequence: Indices 61691 -- 62190
CGCGACGCGGAGGAGGCCCAGCGGCGCGCGGAGGAGGCCACCCGCCAGGCAGAGGAGGCCACTCG
CCAAGCGGAGGAGGCCACTCGGGCCAAAGAAGCGGCCATGCGCCAGGCAAAGGAGGCCACCAGAG
CCAAGGACGACGCGCTCGCCGAGGTGGCCCGGCTCCGGCGCCAGCACACCGACGCGGTGCTGGCG
CTGGCGGAGGTCGACCGGCTCGGGCGCGAGCTCGCGGCGCTGCGCCAGCGGGTCGGGGCGCTCGA
GAAGGAGGCGGCCCGGATGGCGAGCCAGTGGGCGCACCACCAGGAGACGGCCGCGGCCAGCGACA
CCACCGCCAAGCGCGAGGCGGTGCGGCTCGAGGGCGAGACCGCGCGGTTGCGGGTGGAGGTGACC
CAGTGGGAGAGCCAGGCGGCGCAGGCACGGCGCCGGCTCGAGGGGGAGGCGGCCCAGCGGGCGGA
GGCGGAGACGAAGCTTCGAGGGGTTGAGGCGAAGCTCCGGGGGGT
Right flanking sequence: Indices 62248 -- 62747
GGAGTCGGAGGCCCAGCGAGAGAAGGCAGAGGCCCGGGCGGAGGCGGCTGAGAAAGCCAACAAGA
GCCTGACCCAGGCCATTGACTCCCTTCAGACGCCAGCACGGGCCCGCGACGGGTGGAAGGACCAG
TGCCGCCAGGCGGAGGCCGAGGCCCGGCGGATGCGCCAGAGCCTCAGCGACGCCCGGGCCGAGGC
AGAGCGGGAGCGGGCGGCGTTGGAGGACCAGCTCCGGGCCAGCCAGCGCGAGGTGGCGGCTCTCA
AGGCGTCCCAGCGGCTGGCGACGGACCCACGGGCGGTCTCCGAGCTCAAGCGGAGCCTCGAGCGG
GCCCGCGAGCGGGTGGCCGAGCTCGAGCTCGAGGCGAGAGCCAAGAGCAGGGGAGAGAGAGAGCT
GGAGAGTGCGCTGGGCCCGCTCCGCAGCCAGGTGGCCCGGTTGGAAGAGGAGCTCGCGGTGAAGC
AGCGGGAGGTGGACGAGCTCCGGAGAGAGCGGAGCCGGCTCGGGG
Found at i:62864 original size:21 final size:21
Alignment explanation
Indices: 62838--62882 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
62828 GAGCTCGCCA
62838 GGGCCAGAACCGACCTGGAAC
1 GGGCCAGAACCGACCTGGAAC
62859 GGGCCAGAACCGACCTGGAAC
1 GGGCCAGAACCGACCTGGAAC
62880 GGG
1 GGG
62883 TCCGAGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.38, T:0.04
Consensus pattern (21 bp):
GGGCCAGAACCGACCTGGAAC
Left flanking sequence: Indices 62338 -- 62837
TCAGACGCCAGCACGGGCCCGCGACGGGTGGAAGGACCAGTGCCGCCAGGCGGAGGCCGAGGCCC
GGCGGATGCGCCAGAGCCTCAGCGACGCCCGGGCCGAGGCAGAGCGGGAGCGGGCGGCGTTGGAG
GACCAGCTCCGGGCCAGCCAGCGCGAGGTGGCGGCTCTCAAGGCGTCCCAGCGGCTGGCGACGGA
CCCACGGGCGGTCTCCGAGCTCAAGCGGAGCCTCGAGCGGGCCCGCGAGCGGGTGGCCGAGCTCG
AGCTCGAGGCGAGAGCCAAGAGCAGGGGAGAGAGAGAGCTGGAGAGTGCGCTGGGCCCGCTCCGC
AGCCAGGTGGCCCGGTTGGAAGAGGAGCTCGCGGTGAAGCAGCGGGAGGTGGACGAGCTCCGGAG
AGAGCGGAGCCGGCTCGGGGCCCACAGCGACCGGGTGGACGTGTTGGAGGGCGAGCTCCGGCGGT
TGCGGATGGCTGCGCCGCTGGAGCTGGTCCGGGACGAGCTCGCCA
Right flanking sequence: Indices 62883 -- 63382
TCCGAGATGAGCTCAACCGGGCTCAGCACGAACTCTCCAGAGCCAAGACCGAGCTTGTGGACGCA
GAGACCCGGGCGTTCGAGGCCGAGGCCCGTGGCCGCTCGCGCGAGTCCGAGGCTGCCCGGATGGA
GGCCGAGCTCCGTCGCTTGGAGTCCGAGCTCCGTCGCGTGGAGGCCGAGCTCCGGGTGGCCCAGC
TGGCACCAGAGCCTGGACGCAGCAGCGACGCTCTCCGGCTCCACCAGCAGCTCCTGGACGCCCAG
CGCCAGCTCCTGGACACCCAGCACCAGCTCGCGGACGCCCAGCGCCAGCTCGCGGTGGCCCAGGC
GGCCCGCGACGAGACCGAGCGCAAGTGTGCCTACTTCGACGCCGAGTACGACCGGCTCTACGACG
CCCACGAGGCGTTGAAGCGCGAGCTGGAGCGGGCGAGACCGCCAGCGGACCACCAGCCGGCCCAC
GAGCTCGCCCGGGTCGAGGCCCAGCTCCGCCTGGCAGAGCACGCG
Found at i:63033 original size:21 final size:21
Alignment explanation
Indices: 63009--63066 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
62999 GCTGCCCGGA
*
63009 TGGAGGCCGAGCTCCGTCGCT
1 TGGAGGCCGAGCTCCGTCGCG
*
63030 TGGAGTCCGAGCTCCGTCGCG
1 TGGAGGCCGAGCTCCGTCGCG
63051 TGGAGGCCGAGCTCCG
1 TGGAGGCCGAGCTCCG
63067 GGTGGCCCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.10, C:0.33, G:0.40, T:0.17
Consensus pattern (21 bp):
TGGAGGCCGAGCTCCGTCGCG
Left flanking sequence: Indices 62509 -- 63008
GGCGTCCCAGCGGCTGGCGACGGACCCACGGGCGGTCTCCGAGCTCAAGCGGAGCCTCGAGCGGG
CCCGCGAGCGGGTGGCCGAGCTCGAGCTCGAGGCGAGAGCCAAGAGCAGGGGAGAGAGAGAGCTG
GAGAGTGCGCTGGGCCCGCTCCGCAGCCAGGTGGCCCGGTTGGAAGAGGAGCTCGCGGTGAAGCA
GCGGGAGGTGGACGAGCTCCGGAGAGAGCGGAGCCGGCTCGGGGCCCACAGCGACCGGGTGGACG
TGTTGGAGGGCGAGCTCCGGCGGTTGCGGATGGCTGCGCCGCTGGAGCTGGTCCGGGACGAGCTC
GCCAGGGCCAGAACCGACCTGGAACGGGCCAGAACCGACCTGGAACGGGTCCGAGATGAGCTCAA
CCGGGCTCAGCACGAACTCTCCAGAGCCAAGACCGAGCTTGTGGACGCAGAGACCCGGGCGTTCG
AGGCCGAGGCCCGTGGCCGCTCGCGCGAGTCCGAGGCTGCCCGGA
Right flanking sequence: Indices 63067 -- 63566
GGTGGCCCAGCTGGCACCAGAGCCTGGACGCAGCAGCGACGCTCTCCGGCTCCACCAGCAGCTCC
TGGACGCCCAGCGCCAGCTCCTGGACACCCAGCACCAGCTCGCGGACGCCCAGCGCCAGCTCGCG
GTGGCCCAGGCGGCCCGCGACGAGACCGAGCGCAAGTGTGCCTACTTCGACGCCGAGTACGACCG
GCTCTACGACGCCCACGAGGCGTTGAAGCGCGAGCTGGAGCGGGCGAGACCGCCAGCGGACCACC
AGCCGGCCCACGAGCTCGCCCGGGTCGAGGCCCAGCTCCGCCTGGCAGAGCACGCGCTCGCCGCG
TCGGAACGCAAGCTCCGCGAGGCCACCGCGGACGGGTACGACCTCCGGACGGCTGCCTCGCGGTG
GGAGCGTGAGGCTGGCGAGCTCGGCCGCGAGGTGGGCTCGCTTCGCTCCGAGCTCGACCGGGTGG
CTCTGGCCGAGGCCTCGCTTCGCCGGGAGGCCTCCGAGCACCACC
Found at i:63197 original size:21 final size:21
Alignment explanation
Indices: 63125--63193 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
63115 GCTCCACCAG
63125 CAGCTCCTGGACGCCCAGCGC
1 CAGCTCCTGGACGCCCAGCGC
* *
63146 CAGCTCCTGGACACCCAGCAC
1 CAGCTCCTGGACGCCCAGCGC
63167 CAGCTCGC-GGACGCCCAGCGC
1 CAGCTC-CTGGACGCCCAGCGC
63188 CAGCTC
1 CAGCTC
63194 GCGGTGGCCC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 42 0.98
22 1 0.02
ACGTcount: A:0.17, C:0.48, G:0.26, T:0.09
Consensus pattern (21 bp):
CAGCTCCTGGACGCCCAGCGC
Left flanking sequence: Indices 62625 -- 63124
GAGAGAGAGAGCTGGAGAGTGCGCTGGGCCCGCTCCGCAGCCAGGTGGCCCGGTTGGAAGAGGAG
CTCGCGGTGAAGCAGCGGGAGGTGGACGAGCTCCGGAGAGAGCGGAGCCGGCTCGGGGCCCACAG
CGACCGGGTGGACGTGTTGGAGGGCGAGCTCCGGCGGTTGCGGATGGCTGCGCCGCTGGAGCTGG
TCCGGGACGAGCTCGCCAGGGCCAGAACCGACCTGGAACGGGCCAGAACCGACCTGGAACGGGTC
CGAGATGAGCTCAACCGGGCTCAGCACGAACTCTCCAGAGCCAAGACCGAGCTTGTGGACGCAGA
GACCCGGGCGTTCGAGGCCGAGGCCCGTGGCCGCTCGCGCGAGTCCGAGGCTGCCCGGATGGAGG
CCGAGCTCCGTCGCTTGGAGTCCGAGCTCCGTCGCGTGGAGGCCGAGCTCCGGGTGGCCCAGCTG
GCACCAGAGCCTGGACGCAGCAGCGACGCTCTCCGGCTCCACCAG
Right flanking sequence: Indices 63194 -- 63693
GCGGTGGCCCAGGCGGCCCGCGACGAGACCGAGCGCAAGTGTGCCTACTTCGACGCCGAGTACGA
CCGGCTCTACGACGCCCACGAGGCGTTGAAGCGCGAGCTGGAGCGGGCGAGACCGCCAGCGGACC
ACCAGCCGGCCCACGAGCTCGCCCGGGTCGAGGCCCAGCTCCGCCTGGCAGAGCACGCGCTCGCC
GCGTCGGAACGCAAGCTCCGCGAGGCCACCGCGGACGGGTACGACCTCCGGACGGCTGCCTCGCG
GTGGGAGCGTGAGGCTGGCGAGCTCGGCCGCGAGGTGGGCTCGCTTCGCTCCGAGCTCGACCGGG
TGGCTCTGGCCGAGGCCTCGCTTCGCCGGGAGGCCTCCGAGCACCACCGACAGGTGGCCGAGCTC
CAGCGGGAGGTGGCGAGCGCCCGCAGCGACAAGGACGCGGTGGAAGCGGAGTTGGAGCGGGTGCG
GGCCTCTCAGAAGCTGGCGCTGGTCCAGATGGACACCGTGGACGA
Found at i:63970 original size:21 final size:21
Alignment explanation
Indices: 63946--63991 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
63936 CCGAGACGGC
* * *
63946 GTTGGAGACGGCGAAGGGGGA
1 GTTGGAGACGACCAAGGCGGA
63967 GTTGGAGACGACCAAGGCGGA
1 GTTGGAGACGACCAAGGCGGA
63988 GTTG
1 GTTG
63992 AAGAGTGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.50, T:0.13
Consensus pattern (21 bp):
GTTGGAGACGACCAAGGCGGA
Left flanking sequence: Indices 63446 -- 63945
GCCTCGCGGTGGGAGCGTGAGGCTGGCGAGCTCGGCCGCGAGGTGGGCTCGCTTCGCTCCGAGCT
CGACCGGGTGGCTCTGGCCGAGGCCTCGCTTCGCCGGGAGGCCTCCGAGCACCACCGACAGGTGG
CCGAGCTCCAGCGGGAGGTGGCGAGCGCCCGCAGCGACAAGGACGCGGTGGAAGCGGAGTTGGAG
CGGGTGCGGGCCTCTCAGAAGCTGGCGCTGGTCCAGATGGACACCGTGGACGAGCTCCGGGCCGA
GATCCGTCGCCACGTTGCCCGCGAGGCCGAGGCGGAGAGTGAGCTCGCCCGGGCGCACGAGGAGG
CGGCCCGGCTCCTGGGCCAGTTGGCGGCCGCGAAGCGGCGGTTGGCCGAGCACGAGCTGATGGCG
ACGCCTCCGGGCCTGCCCAACGCGTTGGTGTTGTTGGCGGAAGCGGAGGCCAACCGGGCGAAGAC
GGAGGTGGCCCGGGCCAAGGCGGAGGCTGTGGCGGCCGAGACGGC
Right flanking sequence: Indices 63992 -- 64491
AAGAGTGTCAGAGACGAGTTGGCCCGCCAGGGGACCCGTTTGGGCCGGGTAGAGGGGGAAAAGGT
GGCGTTGGAGACGGAATTGACCACGATGGAGACGAAAGTGACCACGTTGGAGACGGAAAAGCGAC
GGTTAGAGACCGAGAAGCAACGGTTGGAGAACGAGGTCGCGGAAGCGCAGCGAGAAGCAGCCAGG
GTCGCTCCAGCAGGTCTGGAGCGGGCCTCTGTGCTGTCTGTGCCGGCCTCTGTGCCGTCTGTCCC
AGTCGAAGCAGTGCCGTCTGTGCCGCCTGTGCTGTCTGTCCCCCCCGAAACCGTGTACTCTGCGT
CCGTGACCGTCCTCGAGCGCCAGGTGGCCGAGCAGACGGCCCAGCTCATGGCCCTCTCGGCCCTG
GTGTCCGACAAAAACCGCACGGTGGCCGAGCTCCGCAAAAAGACCCGTCTCCAGTACCTGTTGCT
CAACCAGGAGATGGCCGATGCCCGCGAGCGCACCCAGGTGTGCGA
Found at i:64086 original size:21 final size:21
Alignment explanation
Indices: 64062--64114 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
64052 AAGGTGGCGT
*
64062 TGGAGACGGAATTGACCACGA
1 TGGAGACGGAAGTGACCACGA
* *
64083 TGGAGACGAAAGTGACCACGT
1 TGGAGACGGAAGTGACCACGA
64104 TGGAGACGGAA
1 TGGAGACGGAA
64115 AAGCGACGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.17, G:0.36, T:0.13
Consensus pattern (21 bp):
TGGAGACGGAAGTGACCACGA
Left flanking sequence: Indices 63562 -- 64061
CCACCGACAGGTGGCCGAGCTCCAGCGGGAGGTGGCGAGCGCCCGCAGCGACAAGGACGCGGTGG
AAGCGGAGTTGGAGCGGGTGCGGGCCTCTCAGAAGCTGGCGCTGGTCCAGATGGACACCGTGGAC
GAGCTCCGGGCCGAGATCCGTCGCCACGTTGCCCGCGAGGCCGAGGCGGAGAGTGAGCTCGCCCG
GGCGCACGAGGAGGCGGCCCGGCTCCTGGGCCAGTTGGCGGCCGCGAAGCGGCGGTTGGCCGAGC
ACGAGCTGATGGCGACGCCTCCGGGCCTGCCCAACGCGTTGGTGTTGTTGGCGGAAGCGGAGGCC
AACCGGGCGAAGACGGAGGTGGCCCGGGCCAAGGCGGAGGCTGTGGCGGCCGAGACGGCGTTGGA
GACGGCGAAGGGGGAGTTGGAGACGACCAAGGCGGAGTTGAAGAGTGTCAGAGACGAGTTGGCCC
GCCAGGGGACCCGTTTGGGCCGGGTAGAGGGGGAAAAGGTGGCGT
Right flanking sequence: Indices 64115 -- 64614
AAGCGACGGTTAGAGACCGAGAAGCAACGGTTGGAGAACGAGGTCGCGGAAGCGCAGCGAGAAGC
AGCCAGGGTCGCTCCAGCAGGTCTGGAGCGGGCCTCTGTGCTGTCTGTGCCGGCCTCTGTGCCGT
CTGTCCCAGTCGAAGCAGTGCCGTCTGTGCCGCCTGTGCTGTCTGTCCCCCCCGAAACCGTGTAC
TCTGCGTCCGTGACCGTCCTCGAGCGCCAGGTGGCCGAGCAGACGGCCCAGCTCATGGCCCTCTC
GGCCCTGGTGTCCGACAAAAACCGCACGGTGGCCGAGCTCCGCAAAAAGACCCGTCTCCAGTACC
TGTTGCTCAACCAGGAGATGGCCGATGCCCGCGAGCGCACCCAGGTGTGCGAGGACGTGTACTTT
AACGCCCAGGAGACGGCGCTCATGGACCTCACGGAGGCTCCGCGGGTCTCGCTCAGGACGGCGGG
GCTCATGGTGGTGGCTGCTCTCCGGTTGCGCAACATGGTCAACCG
Found at i:64156 original size:21 final size:21
Alignment explanation
Indices: 64102--64156 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
64092 AAGTGACCAC
* *
64102 GTTGGAG-ACGGAAAAGCGACG
1 GTTGGAGAAC-GAGAAGCAACG
* *
64123 GTTAGAGACCGAGAAGCAACG
1 GTTGGAGAACGAGAAGCAACG
64144 GTTGGAGAACGAG
1 GTTGGAGAACGAG
64157 GTCGCGGAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.15, G:0.40, T:0.11
Consensus pattern (21 bp):
GTTGGAGAACGAGAAGCAACG
Left flanking sequence: Indices 63602 -- 64101
GCCCGCAGCGACAAGGACGCGGTGGAAGCGGAGTTGGAGCGGGTGCGGGCCTCTCAGAAGCTGGC
GCTGGTCCAGATGGACACCGTGGACGAGCTCCGGGCCGAGATCCGTCGCCACGTTGCCCGCGAGG
CCGAGGCGGAGAGTGAGCTCGCCCGGGCGCACGAGGAGGCGGCCCGGCTCCTGGGCCAGTTGGCG
GCCGCGAAGCGGCGGTTGGCCGAGCACGAGCTGATGGCGACGCCTCCGGGCCTGCCCAACGCGTT
GGTGTTGTTGGCGGAAGCGGAGGCCAACCGGGCGAAGACGGAGGTGGCCCGGGCCAAGGCGGAGG
CTGTGGCGGCCGAGACGGCGTTGGAGACGGCGAAGGGGGAGTTGGAGACGACCAAGGCGGAGTTG
AAGAGTGTCAGAGACGAGTTGGCCCGCCAGGGGACCCGTTTGGGCCGGGTAGAGGGGGAAAAGGT
GGCGTTGGAGACGGAATTGACCACGATGGAGACGAAAGTGACCAC
Right flanking sequence: Indices 64157 -- 64656
GTCGCGGAAGCGCAGCGAGAAGCAGCCAGGGTCGCTCCAGCAGGTCTGGAGCGGGCCTCTGTGCT
GTCTGTGCCGGCCTCTGTGCCGTCTGTCCCAGTCGAAGCAGTGCCGTCTGTGCCGCCTGTGCTGT
CTGTCCCCCCCGAAACCGTGTACTCTGCGTCCGTGACCGTCCTCGAGCGCCAGGTGGCCGAGCAG
ACGGCCCAGCTCATGGCCCTCTCGGCCCTGGTGTCCGACAAAAACCGCACGGTGGCCGAGCTCCG
CAAAAAGACCCGTCTCCAGTACCTGTTGCTCAACCAGGAGATGGCCGATGCCCGCGAGCGCACCC
AGGTGTGCGAGGACGTGTACTTTAACGCCCAGGAGACGGCGCTCATGGACCTCACGGAGGCTCCG
CGGGTCTCGCTCAGGACGGCGGGGCTCATGGTGGTGGCTGCTCTCCGGTTGCGCAACATGGTCAA
CCGGAGACGACGCCGGGAGCACGGGAAATTGCGGCTCCGGGCAGA
Found at i:68841 original size:16 final size:16
Alignment explanation
Indices: 68812--68885 Score: 89
Period size: 16 Copynumber: 4.7 Consensus size: 16
68802 AGAGTAGGAT
* *
68812 GAAGGGAAGGTGGTGA
1 GAAGGAAAGATGGTGA
68828 GAAGGAAAGATGGTGA
1 GAAGGAAAGATGGTGA
* *
68844 GAAGGAAAAAT--TGCT
1 GAAGGAAAGATGGTG-A
68859 GAAGGAAAGATGGTGA
1 GAAGGAAAGATGGTGA
68875 GAAGGAAAGAT
1 GAAGGAAAGAT
68886 TGCTGGCGTG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
14 2 0.04
15 10 0.20
16 35 0.71
17 2 0.04
ACGTcount: A:0.43, C:0.01, G:0.42, T:0.14
Consensus pattern (16 bp):
GAAGGAAAGATGGTGA
Left flanking sequence: Indices 68312 -- 68811
AGGTGGGTCGTCTGACTCCAGTGGGCTCACTGCACACGTGGTAAGCCCTATCTAGCGGCGTTCTC
GTTTCTAACTGGTGATCATCGCCTTCGGAGATTCGATGTCCGCAGGAATCATGTTATCGAGGGTG
ACACCACGCCGGCTGCGGCGAGGTGTGGACCGTCCCTGGAACGATAAAAGAGCACTACGAGTAGG
CTAGAGACACCAAGAATTGCGAAGAGATTTCCACAGCTTCAGTTGCTGGTCAATTTGACATGACG
TTTGTGTTACCAATGACAATACCTCAGCACACCAAGGTTGCTTCTGTGAGCGACAGTGCGCAGGC
TGAGGCGTTGAACCCGTCGTACCAGGTGTTGGCCCGGGAGTCGATGGTGTTTGAGAAGGTGTTGG
GGTGGTGTGGCCACTCCATTTGCGAGTTGCTTAATTGACTGGGGTGTCCCAGGGTAAAGGATTGA
TTTATAGACTGTTTTTAATACAAAGCCGTATTCGAAGAGTAGGAT
Right flanking sequence: Indices 68886 -- 69385
TGCTGGCGTGAGTCGACTAGTTCTTCTATCGCTTAACCATGCTTTATTATCTCAGCTTCGGCTGG
CTAACTTTTATCTCGTCCCTGATGTAGGTCTGATGTAGTTATCAGACCACTTGAGTCATCGAGTC
ATCGTGTTACAAAGCCGTTCGACCTTCGAGATGGTCTAACCGAGGCATGGAAGCACACAAAACCA
CGCGATGGCCACAAAACCACAAGATGGCCTGAGACCACCCGCTAGAGAATTCAAAATGAAACTAT
ATTAAAAGATGGTGAAAAAGAGATAGAAAACGTAGCCAATATTTTAACATTTTCTAAATGCTCTT
TTATAGAAACACGAGATGAAAAAAGAAAAATAATATATTATGTACCAACTATAAAGAGACCGATT
TATCATAAAAATTCAGTGACGACATATAAAGCTAAATTCATTACACAGTAGACCCTAAGTATAAA
AACGTATTTTTACACACCTTGACTCAACCTCTTAATACACTATTT
Found at i:68866 original size:31 final size:31
Alignment explanation
Indices: 68828--68890 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
68818 AAGGTGGTGA
68828 GAAGGAAAGATGGTGAGAAGGAAAAATTGCT
1 GAAGGAAAGATGGTGAGAAGGAAAAATTGCT
*
68859 GAAGGAAAGATGGTGAGAAGGAAAGATTGCT
1 GAAGGAAAGATGGTGAGAAGGAAAAATTGCT
68890 G
1 G
68891 GCGTGAGTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.03, G:0.38, T:0.16
Consensus pattern (31 bp):
GAAGGAAAGATGGTGAGAAGGAAAAATTGCT
Left flanking sequence: Indices 68328 -- 68827
TCCAGTGGGCTCACTGCACACGTGGTAAGCCCTATCTAGCGGCGTTCTCGTTTCTAACTGGTGAT
CATCGCCTTCGGAGATTCGATGTCCGCAGGAATCATGTTATCGAGGGTGACACCACGCCGGCTGC
GGCGAGGTGTGGACCGTCCCTGGAACGATAAAAGAGCACTACGAGTAGGCTAGAGACACCAAGAA
TTGCGAAGAGATTTCCACAGCTTCAGTTGCTGGTCAATTTGACATGACGTTTGTGTTACCAATGA
CAATACCTCAGCACACCAAGGTTGCTTCTGTGAGCGACAGTGCGCAGGCTGAGGCGTTGAACCCG
TCGTACCAGGTGTTGGCCCGGGAGTCGATGGTGTTTGAGAAGGTGTTGGGGTGGTGTGGCCACTC
CATTTGCGAGTTGCTTAATTGACTGGGGTGTCCCAGGGTAAAGGATTGATTTATAGACTGTTTTT
AATACAAAGCCGTATTCGAAGAGTAGGATGAAGGGAAGGTGGTGA
Right flanking sequence: Indices 68891 -- 69390
GCGTGAGTCGACTAGTTCTTCTATCGCTTAACCATGCTTTATTATCTCAGCTTCGGCTGGCTAAC
TTTTATCTCGTCCCTGATGTAGGTCTGATGTAGTTATCAGACCACTTGAGTCATCGAGTCATCGT
GTTACAAAGCCGTTCGACCTTCGAGATGGTCTAACCGAGGCATGGAAGCACACAAAACCACGCGA
TGGCCACAAAACCACAAGATGGCCTGAGACCACCCGCTAGAGAATTCAAAATGAAACTATATTAA
AAGATGGTGAAAAAGAGATAGAAAACGTAGCCAATATTTTAACATTTTCTAAATGCTCTTTTATA
GAAACACGAGATGAAAAAAGAAAAATAATATATTATGTACCAACTATAAAGAGACCGATTTATCA
TAAAAATTCAGTGACGACATATAAAGCTAAATTCATTACACAGTAGACCCTAAGTATAAAAACGT
ATTTTTACACACCTTGACTCAACCTCTTAATACACTATTTACATT
Found at i:69106 original size:19 final size:19
Alignment explanation
Indices: 69071--69109 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
69061 CATGGAAGCA
**
69071 CACAAAACCACGCGATGGC
1 CACAAAACCACAAGATGGC
69090 CACAAAACCACAAGATGGC
1 CACAAAACCACAAGATGGC
69109 C
1 C
69110 TGAGACCACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.36, G:0.18, T:0.05
Consensus pattern (19 bp):
CACAAAACCACAAGATGGC
Left flanking sequence: Indices 68571 -- 69070
GTTTGTGTTACCAATGACAATACCTCAGCACACCAAGGTTGCTTCTGTGAGCGACAGTGCGCAGG
CTGAGGCGTTGAACCCGTCGTACCAGGTGTTGGCCCGGGAGTCGATGGTGTTTGAGAAGGTGTTG
GGGTGGTGTGGCCACTCCATTTGCGAGTTGCTTAATTGACTGGGGTGTCCCAGGGTAAAGGATTG
ATTTATAGACTGTTTTTAATACAAAGCCGTATTCGAAGAGTAGGATGAAGGGAAGGTGGTGAGAA
GGAAAGATGGTGAGAAGGAAAAATTGCTGAAGGAAAGATGGTGAGAAGGAAAGATTGCTGGCGTG
AGTCGACTAGTTCTTCTATCGCTTAACCATGCTTTATTATCTCAGCTTCGGCTGGCTAACTTTTA
TCTCGTCCCTGATGTAGGTCTGATGTAGTTATCAGACCACTTGAGTCATCGAGTCATCGTGTTAC
AAAGCCGTTCGACCTTCGAGATGGTCTAACCGAGGCATGGAAGCA
Right flanking sequence: Indices 69110 -- 69609
TGAGACCACCCGCTAGAGAATTCAAAATGAAACTATATTAAAAGATGGTGAAAAAGAGATAGAAA
ACGTAGCCAATATTTTAACATTTTCTAAATGCTCTTTTATAGAAACACGAGATGAAAAAAGAAAA
ATAATATATTATGTACCAACTATAAAGAGACCGATTTATCATAAAAATTCAGTGACGACATATAA
AGCTAAATTCATTACACAGTAGACCCTAAGTATAAAAACGTATTTTTACACACCTTGACTCAACC
TCTTAATACACTATTTACATTCTTAATTCTTTCTTCTCTATCTATTAAAAAACAAACTACTATAT
GCTCAAGCGTCTTCGGGGATGTCGTCGTGGAAGTACTTACCCTCCAACGTGGGCTTGATCACCCC
GGCGCGGATGACCCAGTCACCAAACGGCTCGCCGTCGTTGCGCTCCTTGGACCACTTCTGGAACA
AGTCGGACAAGATCTCCAAGATCTCGTCCTCCTTGATCGACATGC
Found at i:73647 original size:22 final size:22
Alignment explanation
Indices: 73622--73664 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
73612 GTGGCTTGTA
*
73622 GGGGTGTTTTGGCGGGTGTGTC
1 GGGGCGTTTTGGCGGGTGTGTC
73644 GGGGCGTTTTGGCGGGTGTGT
1 GGGGCGTTTTGGCGGGTGTGT
73665 TTTTTAGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.00, C:0.09, G:0.56, T:0.35
Consensus pattern (22 bp):
GGGGCGTTTTGGCGGGTGTGTC
Left flanking sequence: Indices 73122 -- 73621
GGAGCCACCTCGACCTTGGCAGCGATGTCGTTGACCTCCAACTCGGTGACATCCAGCAAAATTTC
TGGGGTGAACTGGGATTCGAACTCGGGATAAAAGTGGTACACCGGCTGCGCGAGCTTGCCAGCCA
AGTTGTAGGCCAACGAGGCAACCTTGGCGCCGGACTTGGCGCCAGAGACCACCACGGGCGAGCCC
AAGTCGCGGAGAGCAGTCACCGCGCCGTAGTCGCCGTCGACAATCTCAGCATGCACCACTAACCG
CGCGGTTTTGAGCGCGGTCCGGGTCAAAAGCGGGATCTGCGACACCAAAGTGGTCAGATCGGTGT
ATAAGGTGACGAAGTCGTCGTCGTCGCGGGTGTCGAGGAACTCGCCCACGGCAGCCACGGGGTCG
TTGCTCGCCACGAGGACGGTGCCGTCGCCGTACTTTGACGGCACCCCTTTGGCGTCAGAGGTGAC
AAAAATGGAACCAACTAGAGGTTAGTAGGGCACAGGTGGCTTGTA
Right flanking sequence: Indices 73665 -- 74164
TTTTTAGTACATTTTTCACTTGACACTCCCCTCCTTTCAACGGTCACGGAGGGGCCCGTGGTCCA
AAGGCACGGAGCAGTGGGCACGGAGCAGCAGGCACGGTACCACCACTCCTCTGGCGACCATCTCC
AAACCAGCCTCGCGCCAGCCCCACCATTGGCTTCCCCACGGTCGCGATTGGCTAAGGGTCCCCCC
CTTGGAATCCGGGGAAAAACAAAGTGTGGCTCCACCCACGGCCCACACCCAACACCACGGGCGGA
CTCAATCGCCGCGGCCCAAACATCCCAGGCAACGGTACTTACTCGATGGCATAATTTTGTCTCTG
ATTTGGATCGCTTCAGCGACAAGGGAAGGTTTTATTTAATCTGGGTTCGTGCTGTCACGTGGAAT
TATGACAATGTGAAAAATTATGTGGAGAGAACGTCTACCTCGGGCGGCCCCCGGTGAAACGGCGC
GAAAACGCGGGTGGGGGCGTCAAAGAGAGCGTGCGAGTGGTGGTG
Found at i:73763 original size:14 final size:14
Alignment explanation
Indices: 73731--73766 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
73721 CGTGGTCCAA
*
73731 AGGCACGGAGCAGT
1 AGGCACGGAGCAGC
*
73745 GGGCACGGAGCAGC
1 AGGCACGGAGCAGC
73759 AGGCACGG
1 AGGCACGG
73767 TACCACCACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.47, T:0.03
Consensus pattern (14 bp):
AGGCACGGAGCAGC
Left flanking sequence: Indices 73231 -- 73730
GCTGCGCGAGCTTGCCAGCCAAGTTGTAGGCCAACGAGGCAACCTTGGCGCCGGACTTGGCGCCA
GAGACCACCACGGGCGAGCCCAAGTCGCGGAGAGCAGTCACCGCGCCGTAGTCGCCGTCGACAAT
CTCAGCATGCACCACTAACCGCGCGGTTTTGAGCGCGGTCCGGGTCAAAAGCGGGATCTGCGACA
CCAAAGTGGTCAGATCGGTGTATAAGGTGACGAAGTCGTCGTCGTCGCGGGTGTCGAGGAACTCG
CCCACGGCAGCCACGGGGTCGTTGCTCGCCACGAGGACGGTGCCGTCGCCGTACTTTGACGGCAC
CCCTTTGGCGTCAGAGGTGACAAAAATGGAACCAACTAGAGGTTAGTAGGGCACAGGTGGCTTGT
AGGGGTGTTTTGGCGGGTGTGTCGGGGCGTTTTGGCGGGTGTGTTTTTTAGTACATTTTTCACTT
GACACTCCCCTCCTTTCAACGGTCACGGAGGGGCCCGTGGTCCAA
Right flanking sequence: Indices 73767 -- 74266
TACCACCACTCCTCTGGCGACCATCTCCAAACCAGCCTCGCGCCAGCCCCACCATTGGCTTCCCC
ACGGTCGCGATTGGCTAAGGGTCCCCCCCTTGGAATCCGGGGAAAAACAAAGTGTGGCTCCACCC
ACGGCCCACACCCAACACCACGGGCGGACTCAATCGCCGCGGCCCAAACATCCCAGGCAACGGTA
CTTACTCGATGGCATAATTTTGTCTCTGATTTGGATCGCTTCAGCGACAAGGGAAGGTTTTATTT
AATCTGGGTTCGTGCTGTCACGTGGAATTATGACAATGTGAAAAATTATGTGGAGAGAACGTCTA
CCTCGGGCGGCCCCCGGTGAAACGGCGCGAAAACGCGGGTGGGGGCGTCAAAGAGAGCGTGCGAG
TGGTGGTGACTTGTCTCTACTACTCTTCTGTTGTCGTGGTGGGGGCCATGACCTTCGGTTCTCCT
GTAATTGGTCGCAAATATCGTGCGGGGCTACAAACCGGAACTTTC
Found at i:80097 original size:23 final size:23
Alignment explanation
Indices: 80053--80133 Score: 119
Period size: 23 Copynumber: 3.6 Consensus size: 23
80043 AACTGTGCTA
* * *
80053 AAACCA-TTATCATTTGTTTACC
1 AAACCATTTGTCATTCGTCTACC
80075 AAACCATTTGTCATTCGTCTACC
1 AAACCATTTGTCATTCGTCTACC
80098 AAACCATTTGTCATTCGTCTACC
1 AAACCATTTGTCATTCGTCTACC
*
80121 AAGCCATTTGTCA
1 AAACCATTTGTCA
80134 CCTTACCAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
22 6 0.11
23 48 0.89
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (23 bp):
AAACCATTTGTCATTCGTCTACC
Left flanking sequence: Indices 79553 -- 80052
GTAGTGAGTTTTAACTGATACACCCAGATTACTCTCAATTATAATAGAAGAACTGCCTAAAAACC
ACTCTGCAAAGTTATTCCGAACCATTTCGTGTATATTCGCCTAATTTTATGGTCCCTTACCTGAC
AGCTGGTTCCACAACTCTGTATAATTTTTCAAATTTACATACCTTTCCAGTAGGTACAATTTAAG
TCAATCAAAGACACAATCCCAAATATACGAGGCCATCCAGGCCACCCAAAACCCCACGAACTCTA
CAAGTAGCTGTAGAGAAATTTTCACAATCAACGTGGAGGGTACTTTACGAGAAGAAAGTGTATTG
ATTGGACCATGTAGACAATGAACCACCACAACGCACCAAAACAAGCGTTGGGGGGTCTGGGGGGC
GCCGCTAGCGGCCCCCCAGGAGCTGCAACACACCATTACACCACCAACCACACATCCCAACTGAA
GCTCCTACTATGCTATTTTCCTTCTTTCAAACCACAACTGTGCTA
Right flanking sequence: Indices 80134 -- 80633
CCTTACCAAACATTTTCACATCTGTTCGTCAAACCATTGTATATTTCACAGTAACCCACCTCGAT
TTATTTCTACTTACAGTCTCAACGCCGCCATCGGCGACTCGTTGATGATGTCGCGCGAGCTCATC
AGCTTGCTCAGCTTCAGCTCGCCCAACTGCGAGGTGCCCTTCTCTTTGTACGTCAGCACCGCGGG
GATGTCTGCCTTGAGCCTCAGCACAAGCGTCAGGTACGCCCGCGGCTCCAACTTGATCAACGTGT
GCAACGGGATCAGCATCCACGGCAGCTCCTCCTGGGGGATGTTCATGAAGTACGCGTAGAGGCAC
CGAAGCACCGCCTGGTGGGTGATGATCAAGATGTTCTCCTGGCGCTCGAGCTCCATGATGATGGG
CTCCAACCGGATGACTATGTCGCGGTACGACTCGCCGCCGCGGTACCGGTACTCGTACTTGTTGT
CGTCGCGGGCCTTGAAGTCCTCGGGGAACTGCTCCTCGATCTCCT
Found at i:81631 original size:17 final size:17
Alignment explanation
Indices: 81609--81675 Score: 134
Period size: 17 Copynumber: 3.9 Consensus size: 17
81599 GAAAAGATAA
81609 AAGGTTAGGTCAGCTAG
1 AAGGTTAGGTCAGCTAG
81626 AAGGTTAGGTCAGCTAG
1 AAGGTTAGGTCAGCTAG
81643 AAGGTTAGGTCAGCTAG
1 AAGGTTAGGTCAGCTAG
81660 AAGGTTAGGTCAGCTA
1 AAGGTTAGGTCAGCTA
81676 AGGAAGAGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.24
Consensus pattern (17 bp):
AAGGTTAGGTCAGCTAG
Left flanking sequence: Indices 81109 -- 81608
CTTGACGTCCTTGCCAAGGTAGTCGGGCGACGTGGTCTTGACGTCGGCGATGTTGTGGAGCACGA
GCTCCTGGTCGTCGCACCACAGCTCCAAGAACATGGGCTCGATGCTGTTTTCGCGCAAGAGCTTG
AGGATGGCGGCACGCCGGGCCCGGGTGGAGTTGGTGGCGTCCAACACGCCCACCACGCCCTGCTC
GTCGGTGAACCACCGCATCATGTCGGCCACCGCGAGGTCAATGGCCCGTTTGCGCACGCTCAACC
CGGTCTCGTTGGCCGGGGAAAAGAACTCCAGCGTGGCCTCGACGTCGCTGGCAAGCTCGCGGCGG
TAGTTGCCTACGTTGAAGCACTTGGACTTGATCAGGAGCCACGAGAGGTAGCGCACGATCTTCTG
GGCAATGAGCAGCTTGCCGCGCGCGGGCAAGCCCACCATCACCACGCACACCCGCACGTTTTCCA
CGTGGGAAATGGTGAAAACAGGCATTATGAAAGAAGAAAAGATAA
Right flanking sequence: Indices 81676 -- 82175
AGGAAGAGACCAATGAGACCAATAAAGTGGACAAATGGACCAAAAATGGACAAGTAGATCAAAAG
TAGACCAAAATGGACAAGTGGATCAAAAATAGACCAAAAATAGACCAATGTTAAACCAAAAACTG
GTCAGGAAAGATCAAAAAAGATCAAAAAAGACCAAAATCGACCAATGGAAATCGAAAAAAAACCG
TTTGAGTGTGGTTTTTCAAAAGGCCAATAACGGTCACTAGCGGTACCAAAAAACGGTTACCGGGA
CAAGGAAACGGTTAAGGAAGGAAACGGAAGGAACAGCTAGTCTGTAACACCAGCAAATGTTCTGA
TCTCAAACTTTTCAAACCCAAGTGGACACGATCCAACGATCCACAGTAGGACTCGGGGAGTAACG
GGGAAGGGTATCGGTGCAAGTACACACGCTAGTCGGGGTGGCTGGGGTGTGTGTGTCGGCCGAGT
TTCTGGGGCGCTTATATACCCGGTTTTATTGCTGGAGGCTGGGCT
Found at i:81727 original size:19 final size:22
Alignment explanation
Indices: 81687--81728 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
81677 GGAAGAGACC
81687 AATGAGACCAATAAAGTGGACA
1 AATGAGACCAATAAAGTGGACA
81709 AATG-GACCAA-AAA-TGGACA
1 AATGAGACCAATAAAGTGGACA
81728 A
1 A
81729 GTAGATCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 3 0.15
21 6 0.30
22 4 0.20
ACGTcount: A:0.52, C:0.14, G:0.21, T:0.12
Consensus pattern (22 bp):
AATGAGACCAATAAAGTGGACA
Left flanking sequence: Indices 81187 -- 81686
GCACCACAGCTCCAAGAACATGGGCTCGATGCTGTTTTCGCGCAAGAGCTTGAGGATGGCGGCAC
GCCGGGCCCGGGTGGAGTTGGTGGCGTCCAACACGCCCACCACGCCCTGCTCGTCGGTGAACCAC
CGCATCATGTCGGCCACCGCGAGGTCAATGGCCCGTTTGCGCACGCTCAACCCGGTCTCGTTGGC
CGGGGAAAAGAACTCCAGCGTGGCCTCGACGTCGCTGGCAAGCTCGCGGCGGTAGTTGCCTACGT
TGAAGCACTTGGACTTGATCAGGAGCCACGAGAGGTAGCGCACGATCTTCTGGGCAATGAGCAGC
TTGCCGCGCGCGGGCAAGCCCACCATCACCACGCACACCCGCACGTTTTCCACGTGGGAAATGGT
GAAAACAGGCATTATGAAAGAAGAAAAGATAAAAGGTTAGGTCAGCTAGAAGGTTAGGTCAGCTA
GAAGGTTAGGTCAGCTAGAAGGTTAGGTCAGCTAAGGAAGAGACC
Right flanking sequence: Indices 81729 -- 82228
GTAGATCAAAAGTAGACCAAAATGGACAAGTGGATCAAAAATAGACCAAAAATAGACCAATGTTA
AACCAAAAACTGGTCAGGAAAGATCAAAAAAGATCAAAAAAGACCAAAATCGACCAATGGAAATC
GAAAAAAAACCGTTTGAGTGTGGTTTTTCAAAAGGCCAATAACGGTCACTAGCGGTACCAAAAAA
CGGTTACCGGGACAAGGAAACGGTTAAGGAAGGAAACGGAAGGAACAGCTAGTCTGTAACACCAG
CAAATGTTCTGATCTCAAACTTTTCAAACCCAAGTGGACACGATCCAACGATCCACAGTAGGACT
CGGGGAGTAACGGGGAAGGGTATCGGTGCAAGTACACACGCTAGTCGGGGTGGCTGGGGTGTGTG
TGTCGGCCGAGTTTCTGGGGCGCTTATATACCCGGTTTTATTGCTGGAGGCTGGGCTCAGGCGAT
CGGACTTGCAACAGAAAAAGTCCGAAACGGGCTCTGAAACAAGTT
Found at i:81747 original size:30 final size:30
Alignment explanation
Indices: 81708--81781 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 30
81698 TAAAGTGGAC
*
81708 AAATGGACCAAAAATGGACAAGTAGATCAA
1 AAATAGACCAAAAATGGACAAGTAGATCAA
* *
81738 AAGTAGACC-AAAATGGACAAGTGGATCAA
1 AAATAGACCAAAAATGGACAAGTAGATCAA
81767 AAATAGACCAAAAAT
1 AAATAGACCAAAAAT
81782 AGACCAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 27 0.69
30 12 0.31
ACGTcount: A:0.54, C:0.14, G:0.19, T:0.14
Consensus pattern (30 bp):
AAATAGACCAAAAATGGACAAGTAGATCAA
Left flanking sequence: Indices 81208 -- 81707
GGGCTCGATGCTGTTTTCGCGCAAGAGCTTGAGGATGGCGGCACGCCGGGCCCGGGTGGAGTTGG
TGGCGTCCAACACGCCCACCACGCCCTGCTCGTCGGTGAACCACCGCATCATGTCGGCCACCGCG
AGGTCAATGGCCCGTTTGCGCACGCTCAACCCGGTCTCGTTGGCCGGGGAAAAGAACTCCAGCGT
GGCCTCGACGTCGCTGGCAAGCTCGCGGCGGTAGTTGCCTACGTTGAAGCACTTGGACTTGATCA
GGAGCCACGAGAGGTAGCGCACGATCTTCTGGGCAATGAGCAGCTTGCCGCGCGCGGGCAAGCCC
ACCATCACCACGCACACCCGCACGTTTTCCACGTGGGAAATGGTGAAAACAGGCATTATGAAAGA
AGAAAAGATAAAAGGTTAGGTCAGCTAGAAGGTTAGGTCAGCTAGAAGGTTAGGTCAGCTAGAAG
GTTAGGTCAGCTAAGGAAGAGACCAATGAGACCAATAAAGTGGAC
Right flanking sequence: Indices 81782 -- 82281
AGACCAATGTTAAACCAAAAACTGGTCAGGAAAGATCAAAAAAGATCAAAAAAGACCAAAATCGA
CCAATGGAAATCGAAAAAAAACCGTTTGAGTGTGGTTTTTCAAAAGGCCAATAACGGTCACTAGC
GGTACCAAAAAACGGTTACCGGGACAAGGAAACGGTTAAGGAAGGAAACGGAAGGAACAGCTAGT
CTGTAACACCAGCAAATGTTCTGATCTCAAACTTTTCAAACCCAAGTGGACACGATCCAACGATC
CACAGTAGGACTCGGGGAGTAACGGGGAAGGGTATCGGTGCAAGTACACACGCTAGTCGGGGTGG
CTGGGGTGTGTGTGTCGGCCGAGTTTCTGGGGCGCTTATATACCCGGTTTTATTGCTGGAGGCTG
GGCTCAGGCGATCGGACTTGCAACAGAAAAAGTCCGAAACGGGCTCTGAAACAAGTTGGGGGAGT
TAGCAGGGGTGGCTGGGGGGTGTAGCAACCGGATGGAATCGGTGG
Found at i:81842 original size:9 final size:10
Alignment explanation
Indices: 81812--81842 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
81802 ACTGGTCAGG
81812 AAAGATCAAA
1 AAAGATCAAA
81822 AAAGATCAAA
1 AAAGATCAAA
*
81832 AAAGACCAAA
1 AAAGATCAAA
81842 A
1 A
81843 TCGACCAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.71, C:0.13, G:0.10, T:0.06
Consensus pattern (10 bp):
AAAGATCAAA
Left flanking sequence: Indices 81312 -- 81811
ACCACCGCATCATGTCGGCCACCGCGAGGTCAATGGCCCGTTTGCGCACGCTCAACCCGGTCTCG
TTGGCCGGGGAAAAGAACTCCAGCGTGGCCTCGACGTCGCTGGCAAGCTCGCGGCGGTAGTTGCC
TACGTTGAAGCACTTGGACTTGATCAGGAGCCACGAGAGGTAGCGCACGATCTTCTGGGCAATGA
GCAGCTTGCCGCGCGCGGGCAAGCCCACCATCACCACGCACACCCGCACGTTTTCCACGTGGGAA
ATGGTGAAAACAGGCATTATGAAAGAAGAAAAGATAAAAGGTTAGGTCAGCTAGAAGGTTAGGTC
AGCTAGAAGGTTAGGTCAGCTAGAAGGTTAGGTCAGCTAAGGAAGAGACCAATGAGACCAATAAA
GTGGACAAATGGACCAAAAATGGACAAGTAGATCAAAAGTAGACCAAAATGGACAAGTGGATCAA
AAATAGACCAAAAATAGACCAATGTTAAACCAAAAACTGGTCAGG
Right flanking sequence: Indices 81843 -- 82342
TCGACCAATGGAAATCGAAAAAAAACCGTTTGAGTGTGGTTTTTCAAAAGGCCAATAACGGTCAC
TAGCGGTACCAAAAAACGGTTACCGGGACAAGGAAACGGTTAAGGAAGGAAACGGAAGGAACAGC
TAGTCTGTAACACCAGCAAATGTTCTGATCTCAAACTTTTCAAACCCAAGTGGACACGATCCAAC
GATCCACAGTAGGACTCGGGGAGTAACGGGGAAGGGTATCGGTGCAAGTACACACGCTAGTCGGG
GTGGCTGGGGTGTGTGTGTCGGCCGAGTTTCTGGGGCGCTTATATACCCGGTTTTATTGCTGGAG
GCTGGGCTCAGGCGATCGGACTTGCAACAGAAAAAGTCCGAAACGGGCTCTGAAACAAGTTGGGG
GAGTTAGCAGGGGTGGCTGGGGGGTGTAGCAACCGGATGGAATCGGTGGTTGTTGCTCGGAGGTC
GGGGTAGCGCTGGTAGATGACGATGTTTCGGCGTTTCCCCACACT
Found at i:87262 original size:15 final size:15
Alignment explanation
Indices: 87244--87288 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
87234 GGTGGTGGCA
87244 TAGTGGGTGGCATAG
1 TAGTGGGTGGCATAG
*
87259 TAGTGAGT-GCATAG
1 TAGTGGGTGGCATAG
87273 TAGTGGGTGGCATAG
1 TAGTGGGTGGCATAG
87288 T
1 T
87289 GGTGCGTGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.22, C:0.07, G:0.42, T:0.29
Consensus pattern (15 bp):
TAGTGGGTGGCATAG
Left flanking sequence: Indices 86744 -- 87243
ATCCCGGGGCTCTTGGGTGGGGGTTTTGGCGGGTCAGCTGCGGTGTCCGCCGCCTTCTTTTTGGT
CAGCAGCCTCTTGAAGAGCATCAATGGGTGGGGAAGGTGGTGGTGTGGGGATAGGGTTTGGGACA
AGGTGATCTCCGTTAATGAGGGGAGCGGGCTCGTGACGGTGGAGAGACAGGGTGGGGGGATGTGC
GGGAGAACGGGAGGGAGAGCCGGCTGTGGCTGGGTAGGGGTGTGGGTAGGGGGTTGTGGGGTGTT
GTGGGGTGTACTACTAGTGTGCTACGTGCGTGGTGTTGACTATTTGGTATTTATTTGGCCGGTTT
CGATTGTTTCGAAGTCTCACTTGCTGGTTTACGACACAAAAATAAACGTTTCGTGCAACCGAGGA
CGCGGCTTATGTGTCGTAAGACCGGTTAGAGCCGGGTCACAAGGGAGTGGTGGTGGTGGCCAGGG
GACGTGGGACTGGAATTCAGAGTAGGGTGGTTTTTGGTGGTGGCA
Right flanking sequence: Indices 87289 -- 87788
GGTGCGTGGGTGTAGTGAGTCTGGTGACACCAGGTGGTGGTCAGCGCATAGGGAGACAGGGTCGC
AGCGTCCACCACCAACGGTAGTGGCGCCACCAGCTTCGTTCCTGGGGACCGGGCGGCTAATTACA
TGGTTGGCGACCGCTCACAAAAAGTGTCTAGTCCCTGTCGACACTAGATGTAATTATGGGGCAAC
CCCGCGGGACAATGTGGGGTGACCAGTTCTGGAGACAACGAGATCGGAAGCGAGGGGAGTATACG
TAGACTCGTGCCTCGGACCCGAAACGGGGTTTTTCGGGACCGTTTCATGCCAAGGTTGCAAATGG
GCCGCGAGATGAGCGTATAAGCTCCAGAGACTCGGGTAAGCTCGAGAATAGTGTAAGCTCGAGAC
TTGGGTAAATTCTAGAGGCTCGGGTAAGTTCTAGAGACTCGGGTAAGTTCCAGGTGAGAACTGCC
GGACCGTTACTGATTTGCATGGTACGTCGCGAGAGAAGATTCAAC
Found at i:87297 original size:15 final size:14
Alignment explanation
Indices: 87235--87288 Score: 69
Period size: 14 Copynumber: 3.9 Consensus size: 14
87225 GTGGTTTTTG
87235 GTGGTGGCATAGT-
1 GTGGTGGCATAGTA
87248 G-GGTGGCATAGTA
1 GTGGTGGCATAGTA
87261 GTGAGT-GCATAGTA
1 GTG-GTGGCATAGTA
87275 GTGGGTGGCATAGT
1 GT-GGTGGCATAGT
87289 GGTGCGTGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
12 11 0.31
13 2 0.06
14 13 0.36
15 10 0.28
ACGTcount: A:0.20, C:0.07, G:0.44, T:0.28
Consensus pattern (14 bp):
GTGGTGGCATAGTA
Left flanking sequence: Indices 86735 -- 87234
AGCGACATCATCCCGGGGCTCTTGGGTGGGGGTTTTGGCGGGTCAGCTGCGGTGTCCGCCGCCTT
CTTTTTGGTCAGCAGCCTCTTGAAGAGCATCAATGGGTGGGGAAGGTGGTGGTGTGGGGATAGGG
TTTGGGACAAGGTGATCTCCGTTAATGAGGGGAGCGGGCTCGTGACGGTGGAGAGACAGGGTGGG
GGGATGTGCGGGAGAACGGGAGGGAGAGCCGGCTGTGGCTGGGTAGGGGTGTGGGTAGGGGGTTG
TGGGGTGTTGTGGGGTGTACTACTAGTGTGCTACGTGCGTGGTGTTGACTATTTGGTATTTATTT
GGCCGGTTTCGATTGTTTCGAAGTCTCACTTGCTGGTTTACGACACAAAAATAAACGTTTCGTGC
AACCGAGGACGCGGCTTATGTGTCGTAAGACCGGTTAGAGCCGGGTCACAAGGGAGTGGTGGTGG
TGGCCAGGGGACGTGGGACTGGAATTCAGAGTAGGGTGGTTTTTG
Right flanking sequence: Indices 87289 -- 87788
GGTGCGTGGGTGTAGTGAGTCTGGTGACACCAGGTGGTGGTCAGCGCATAGGGAGACAGGGTCGC
AGCGTCCACCACCAACGGTAGTGGCGCCACCAGCTTCGTTCCTGGGGACCGGGCGGCTAATTACA
TGGTTGGCGACCGCTCACAAAAAGTGTCTAGTCCCTGTCGACACTAGATGTAATTATGGGGCAAC
CCCGCGGGACAATGTGGGGTGACCAGTTCTGGAGACAACGAGATCGGAAGCGAGGGGAGTATACG
TAGACTCGTGCCTCGGACCCGAAACGGGGTTTTTCGGGACCGTTTCATGCCAAGGTTGCAAATGG
GCCGCGAGATGAGCGTATAAGCTCCAGAGACTCGGGTAAGCTCGAGAATAGTGTAAGCTCGAGAC
TTGGGTAAATTCTAGAGGCTCGGGTAAGTTCTAGAGACTCGGGTAAGTTCCAGGTGAGAACTGCC
GGACCGTTACTGATTTGCATGGTACGTCGCGAGAGAAGATTCAAC
Found at i:87655 original size:19 final size:19
Alignment explanation
Indices: 87631--87731 Score: 75
Period size: 19 Copynumber: 5.5 Consensus size: 19
87621 GATGAGCGTA
87631 TAAGCTCCAGAGACTCGGG
1 TAAGCTCCAGAGACTCGGG
* * *
87650 TAAGCT-C-GAGAATAGTG
1 TAAGCTCCAGAGACTCGGG
*
87667 TAAGCT-C-GAGACTTGGG
1 TAAGCTCCAGAGACTCGGG
** * *
87684 TAAATTCTAGAGGCTCGGG
1 TAAGCTCCAGAGACTCGGG
* *
87703 TAAGTTCTAGAGACTCGGG
1 TAAGCTCCAGAGACTCGGG
*
87722 TAAGTTCCAG
1 TAAGCTCCAG
87732 GTGAGAACTG
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
17 25 0.38
18 1 0.02
19 40 0.61
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (19 bp):
TAAGCTCCAGAGACTCGGG
Left flanking sequence: Indices 87131 -- 87630
GGACGCGGCTTATGTGTCGTAAGACCGGTTAGAGCCGGGTCACAAGGGAGTGGTGGTGGTGGCCA
GGGGACGTGGGACTGGAATTCAGAGTAGGGTGGTTTTTGGTGGTGGCATAGTGGGTGGCATAGTA
GTGAGTGCATAGTAGTGGGTGGCATAGTGGTGCGTGGGTGTAGTGAGTCTGGTGACACCAGGTGG
TGGTCAGCGCATAGGGAGACAGGGTCGCAGCGTCCACCACCAACGGTAGTGGCGCCACCAGCTTC
GTTCCTGGGGACCGGGCGGCTAATTACATGGTTGGCGACCGCTCACAAAAAGTGTCTAGTCCCTG
TCGACACTAGATGTAATTATGGGGCAACCCCGCGGGACAATGTGGGGTGACCAGTTCTGGAGACA
ACGAGATCGGAAGCGAGGGGAGTATACGTAGACTCGTGCCTCGGACCCGAAACGGGGTTTTTCGG
GACCGTTTCATGCCAAGGTTGCAAATGGGCCGCGAGATGAGCGTA
Right flanking sequence: Indices 87732 -- 88231
GTGAGAACTGCCGGACCGTTACTGATTTGCATGGTACGTCGCGAGAGAAGATTCAACGTAGGTGG
TGCCTGGGGGTGGCATGTGAACTGAACCCGTGGGCAATATGGTGAATGCAGTTGGTGCGAGGCGG
TCAGAGACGGTGCCATGGTGTTGGTCTGAGACACGGAGGCAGGTGGATGTGGAGAGCGTGGGGTG
CAAAGCTCTACAGTTACGGCTCTGATTAGAAAATTTATCTCTACCATGATAATTTGGCCCAAGCT
ACGACTAGTTCGGTCGCTGACGGTCTAGACAAGGTACCAAATAAGCTCTGAATTAGATCTGCACG
GCTACCGTGTTGGAGTAAGAACCTTAAGCATAACAGAGTATGCACGTGTAAATTGCCCAGCTGTC
TCGAGATCGCCGCGTAGGCTCTGCTCGTATCTGAGATGCATCGAACCCGGCATTCTTTACTTGGC
AACAACCCTTGCATTGTTATTGTATTCATACTCCGACGAATGTTG
Found at i:87686 original size:17 final size:17
Alignment explanation
Indices: 87640--87686 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
87630 ATAAGCTCCA
*
87640 GAGACTCGGGTAAGCTC
1 GAGACTAGGGTAAGCTC
* *
87657 GAGAATAGTGTAAGCTC
1 GAGACTAGGGTAAGCTC
*
87674 GAGACTTGGGTAA
1 GAGACTAGGGTAA
87687 ATTCTAGAGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.34, T:0.21
Consensus pattern (17 bp):
GAGACTAGGGTAAGCTC
Left flanking sequence: Indices 87140 -- 87639
TTATGTGTCGTAAGACCGGTTAGAGCCGGGTCACAAGGGAGTGGTGGTGGTGGCCAGGGGACGTG
GGACTGGAATTCAGAGTAGGGTGGTTTTTGGTGGTGGCATAGTGGGTGGCATAGTAGTGAGTGCA
TAGTAGTGGGTGGCATAGTGGTGCGTGGGTGTAGTGAGTCTGGTGACACCAGGTGGTGGTCAGCG
CATAGGGAGACAGGGTCGCAGCGTCCACCACCAACGGTAGTGGCGCCACCAGCTTCGTTCCTGGG
GACCGGGCGGCTAATTACATGGTTGGCGACCGCTCACAAAAAGTGTCTAGTCCCTGTCGACACTA
GATGTAATTATGGGGCAACCCCGCGGGACAATGTGGGGTGACCAGTTCTGGAGACAACGAGATCG
GAAGCGAGGGGAGTATACGTAGACTCGTGCCTCGGACCCGAAACGGGGTTTTTCGGGACCGTTTC
ATGCCAAGGTTGCAAATGGGCCGCGAGATGAGCGTATAAGCTCCA
Right flanking sequence: Indices 87687 -- 88186
ATTCTAGAGGCTCGGGTAAGTTCTAGAGACTCGGGTAAGTTCCAGGTGAGAACTGCCGGACCGTT
ACTGATTTGCATGGTACGTCGCGAGAGAAGATTCAACGTAGGTGGTGCCTGGGGGTGGCATGTGA
ACTGAACCCGTGGGCAATATGGTGAATGCAGTTGGTGCGAGGCGGTCAGAGACGGTGCCATGGTG
TTGGTCTGAGACACGGAGGCAGGTGGATGTGGAGAGCGTGGGGTGCAAAGCTCTACAGTTACGGC
TCTGATTAGAAAATTTATCTCTACCATGATAATTTGGCCCAAGCTACGACTAGTTCGGTCGCTGA
CGGTCTAGACAAGGTACCAAATAAGCTCTGAATTAGATCTGCACGGCTACCGTGTTGGAGTAAGA
ACCTTAAGCATAACAGAGTATGCACGTGTAAATTGCCCAGCTGTCTCGAGATCGCCGCGTAGGCT
CTGCTCGTATCTGAGATGCATCGAACCCGGCATTCTTTACTTGGC
Found at i:91238 original size:11 final size:11
Alignment explanation
Indices: 91224--91254 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
91214 ATAGGGGAGA
91224 AAGAGGGGTGG
1 AAGAGGGGTGG
91235 AAGAGGGGTGG
1 AAGAGGGGTGG
91246 AAGAGGGGT
1 AAGAGGGGT
91255 TGGCAAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.61, T:0.10
Consensus pattern (11 bp):
AAGAGGGGTGG
Left flanking sequence: Indices 90724 -- 91223
CCGAAAAGAGGAAAAATGGCGATAAATGCTTGGGAGAAGAATGTGTGTGGTGATACGGAGCTCAA
AGTGGCAGGGTGGTGGTTCCGGTGGTTCCGCAGCGGCCGGTGTGCATTTTGCAGCCCTCGACCGA
CAGGGTCAGTCTCTGCATGAGCAAACGGTTGCGAAGAGTAAACACGAGTTTGTGGCAAAAGAGAC
GTTTGTGTAAAAGGACGGTTTAGGAAGGTTACAGGGAATGTCAGATAGTCGTGGTGTGGGGCCTT
TGATTCGCTGGGTTCGCGCGGGTTATGTCCGTTTACCCCGTAAACCCTTCCCAGTTGGGACAAAT
GCAGCCAAGCACCCGACTGCCGCGGGATTTCAGGAGCCATTGGCGACGTTGGCCAGCCACGATAA
CGGTGACGGCCATTGACGGTGTTTGGCCCAAACAATGACCTGCCCCGGGTTATGCACTGGAGACA
CGGCCGACACTCGGGCCAGCGCGTGTCTGAGAGCGATAGGGGAGA
Right flanking sequence: Indices 91255 -- 91754
TGGCAAGTGTGATAGACTGTAGGGTAGTGGGATCTAAGGTGGTAGGTGGGTTGGGATGATGGTAG
GCTAGTCTCTATGGCGCCAGGTAGTCAGGGATCGAACCTAAGGGGTCGACCACACCAAGAAATCA
CTACATGTCTGTACGCAAAGTAGGTCGACTATACTCGTAAATAGACTTTGAGGCGCCCGCCCGTG
GCTCTCGTGATCGCTAGCGACCGTCGATCCTCTGATCGTGGGTGGGGCTGTGTGGAACAATGGGT
GTCTTAGTCAGGTCTCGCGCGAAATCTCCCTATACACCACGGAATCCGGTTTTTTGAGGTGGTGG
AAGGACGCGTGGAAAAGTGAAGAAGGGGACTATGAGGCTACGAGGGCTAAGGGGGCTATGGGGGT
AGGTTCAAGGTGGGTGTATGGCTCATATACTTGTTACAAATATTATACACGCTCTACACGTGTCA
TATTCTGGTTCTTCCTTCTTTGTGACTGCTTCTGCTTCCTTCCTT
Found at i:92820 original size:15 final size:12
Alignment explanation
Indices: 92786--92835 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
92776 AGAAGAACGC
92786 GAAGAAGGAGGA
1 GAAGAAGGAGGA
*
92798 GAAAAAGGAGGAA
1 GAAGAAGGAGG-A
*
92811 GTGAAGAAGGAAGA
1 --GAAGAAGGAGGA
92825 GAAGAAGGAGG
1 GAAGAAGGAGG
92836 CCCCCAAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
12 20 0.65
13 1 0.03
14 1 0.03
15 9 0.29
ACGTcount: A:0.52, C:0.00, G:0.46, T:0.02
Consensus pattern (12 bp):
GAAGAAGGAGGA
Left flanking sequence: Indices 92286 -- 92785
CTCCAGAAGCTCCAGCACTTCGAGCCGCTCTTTGGCGAGAACCGCCCGGCCCAGTTCTACGAGTT
TTTGAAGCAGCAGTACACCAACCCGGACGCCCCCAAGGAGCAGAAGCCCCACGAGAAGGTGATGA
AGGCCGCGTTGATGCGCCGGGCCGTCGAGGCCATCCGCCGGCTGATGAAACTCAAGGAGTTCGAG
GGCAACTTCACCAAGCTCTACGCCGACGGGTTGATTGGCGACGACATCCACCAGCAGTACGAGAT
CCAGGTCAAGTTCCAGGAGTTGGAGATCCAGGACATTGCCCGCGAGTGCGAGTCCTTCAAGAAGG
GGTGGGTGCAGACGTTTTTCCCCGTGTGCCAGGAGGTGTGCTTCAACGAGGCGTTGCGCCGGCGG
TTGTATGCGATGGACGACCGCCTGGCGTCGTTGCTGGAGTTGTGGCACTACCAGGTGGCGAAGCT
GGAGGAGGCCAAGCCCGAGCCCGCGAAGAAGGGCAAGAAGAACGC
Right flanking sequence: Indices 92836 -- 93335
CCCCCAAGGTGGAAAAACCGGCGGAGCCCAAGGTGGAGAAGCCCCAGTCGCCTGTGACGGTGGAG
CGGGTGGAGGAGGTGCTGGAGCCCGCTGGGGGGCCCCAGATCGTCGAGATCACCGACTTGGACTA
GGTAATACACACGGTCAGCGACCATAGAGAACAAATTTGTAGGGTTTTAGGGTGTTTTTGTAGGG
TGTTTGTCTGTATTGTTTTAACGTGGTATAGATTTGACTCGGACGCGGTGGCTCACTAGCACACG
GTGGCACACCGGTGCACACGGGTTTAGGAAGTGTGGTGCGGAGCACAGGGTAGCACCGGACGAGG
CGTGGAAACCTGGATTATTACTATTATCTGACTATGTAAGGATGGTGCAATTGCGGAAGTGGTTG
TGGTCATCACTCAACACCGGCAAATCGTACCAGCTCTGCAATAAGCTTCCCCATTAGATCAAGAC
TAATTCACAAGATATAGCAAGGTACAGTGTATGTTCAGTGTTTAG
Found at i:93348 original size:18 final size:18
Alignment explanation
Indices: 93327--93411 Score: 89
Period size: 18 Copynumber: 4.7 Consensus size: 18
93317 GTGTATGTTC
* *
93327 AGTGTTTAGTGGCTATTA
1 AGTGTTCAGTGGCTATCA
* * *
93345 AGTGTCCAGTGACTATTA
1 AGTGTTCAGTGGCTATCA
* *
93363 AGTGTTTAGTGGGTATCA
1 AGTGTTCAGTGGCTATCA
* *
93381 AATGATCAGTGGCTATCA
1 AGTGTTCAGTGGCTATCA
93399 AGTGTTCAGTGGC
1 AGTGTTCAGTGGC
93412 CAGTAATCAG
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (18 bp):
AGTGTTCAGTGGCTATCA
Left flanking sequence: Indices 92827 -- 93326
AGAAGGAGGCCCCCAAGGTGGAAAAACCGGCGGAGCCCAAGGTGGAGAAGCCCCAGTCGCCTGTG
ACGGTGGAGCGGGTGGAGGAGGTGCTGGAGCCCGCTGGGGGGCCCCAGATCGTCGAGATCACCGA
CTTGGACTAGGTAATACACACGGTCAGCGACCATAGAGAACAAATTTGTAGGGTTTTAGGGTGTT
TTTGTAGGGTGTTTGTCTGTATTGTTTTAACGTGGTATAGATTTGACTCGGACGCGGTGGCTCAC
TAGCACACGGTGGCACACCGGTGCACACGGGTTTAGGAAGTGTGGTGCGGAGCACAGGGTAGCAC
CGGACGAGGCGTGGAAACCTGGATTATTACTATTATCTGACTATGTAAGGATGGTGCAATTGCGG
AAGTGGTTGTGGTCATCACTCAACACCGGCAAATCGTACCAGCTCTGCAATAAGCTTCCCCATTA
GATCAAGACTAATTCACAAGATATAGCAAGGTACAGTGTATGTTC
Right flanking sequence: Indices 93412 -- 93911
CAGTAATCAGTGTCAGTGTCCACTCTGTTTTCCCCAGCTATGTCCACTCCCGTCCACTTTGTCCA
CTTCTGTTCACTGTTTTCCACAGCTATTTCCACTTTTCCACTCCACTCACTCACCTCCTACATCA
GCTCTGACAAAGACCTTAAACTATAGTCGTGCTATAATGGTGCGCCGTGGGTCCACCGAGACTGC
GCGGCTGGCCTGACCGGCTCCTGGCGCTCTCATGCTGTGACTGGCTATGACTGGCTAACTTTCCT
CGCTCGTCTACGACTCGGAGCTCTTGTTCGCCTTCAGGACGTCCTTCTTCAACTGGTCGTAGGCG
TCGCCCTCCTCGTCGTCGTCATCGTCGTCATCGTCATCGTCATCATCGTCGTCGTCATCGTCATC
GTCGTCGTTGTCCCCGTTCTCGTCGTTCTCGTCGTTCTCGTCGTTGTCGTCGTCGTCGTCGGGAT
AGCCGCCCAACTTCATCACAATCCGGTCGACAATCTCGTTCCAGT
Found at i:93367 original size:36 final size:36
Alignment explanation
Indices: 93327--93411 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
93317 GTGTATGTTC
* * *
93327 AGTGTTTAGTGGCTATTAAGTG-TCCAGTGACTATTA
1 AGTGTTTAGTGGCTATCAAATGAT-CAGTGACTATCA
* *
93363 AGTGTTTAGTGGGTATCAAATGATCAGTGGCTATCA
1 AGTGTTTAGTGGCTATCAAATGATCAGTGACTATCA
*
93399 AGTGTTCAGTGGC
1 AGTGTTTAGTGGC
93412 CAGTAATCAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
36 40 0.98
37 1 0.02
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (36 bp):
AGTGTTTAGTGGCTATCAAATGATCAGTGACTATCA
Left flanking sequence: Indices 92827 -- 93326
AGAAGGAGGCCCCCAAGGTGGAAAAACCGGCGGAGCCCAAGGTGGAGAAGCCCCAGTCGCCTGTG
ACGGTGGAGCGGGTGGAGGAGGTGCTGGAGCCCGCTGGGGGGCCCCAGATCGTCGAGATCACCGA
CTTGGACTAGGTAATACACACGGTCAGCGACCATAGAGAACAAATTTGTAGGGTTTTAGGGTGTT
TTTGTAGGGTGTTTGTCTGTATTGTTTTAACGTGGTATAGATTTGACTCGGACGCGGTGGCTCAC
TAGCACACGGTGGCACACCGGTGCACACGGGTTTAGGAAGTGTGGTGCGGAGCACAGGGTAGCAC
CGGACGAGGCGTGGAAACCTGGATTATTACTATTATCTGACTATGTAAGGATGGTGCAATTGCGG
AAGTGGTTGTGGTCATCACTCAACACCGGCAAATCGTACCAGCTCTGCAATAAGCTTCCCCATTA
GATCAAGACTAATTCACAAGATATAGCAAGGTACAGTGTATGTTC
Right flanking sequence: Indices 93412 -- 93911
CAGTAATCAGTGTCAGTGTCCACTCTGTTTTCCCCAGCTATGTCCACTCCCGTCCACTTTGTCCA
CTTCTGTTCACTGTTTTCCACAGCTATTTCCACTTTTCCACTCCACTCACTCACCTCCTACATCA
GCTCTGACAAAGACCTTAAACTATAGTCGTGCTATAATGGTGCGCCGTGGGTCCACCGAGACTGC
GCGGCTGGCCTGACCGGCTCCTGGCGCTCTCATGCTGTGACTGGCTATGACTGGCTAACTTTCCT
CGCTCGTCTACGACTCGGAGCTCTTGTTCGCCTTCAGGACGTCCTTCTTCAACTGGTCGTAGGCG
TCGCCCTCCTCGTCGTCGTCATCGTCGTCATCGTCATCGTCATCATCGTCGTCGTCATCGTCATC
GTCGTCGTTGTCCCCGTTCTCGTCGTTCTCGTCGTTCTCGTCGTTGTCGTCGTCGTCGTCGGGAT
AGCCGCCCAACTTCATCACAATCCGGTCGACAATCTCGTTCCAGT
Found at i:93761 original size:6 final size:6
Alignment explanation
Indices: 93761--93809 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
93751 GTCGTCATCG
* *
93761 TCGTCA TCGTCA TCGTCA ---TCA TCGTCG TCGTCA TCGTCA TCGTCG
1 TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA
93806 TCGT
1 TCGT
93810 TGTCCCCGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
3 3 0.08
6 34 0.92
ACGTcount: A:0.12, C:0.33, G:0.20, T:0.35
Consensus pattern (6 bp):
TCGTCA
Left flanking sequence: Indices 93261 -- 93760
CTGCAATAAGCTTCCCCATTAGATCAAGACTAATTCACAAGATATAGCAAGGTACAGTGTATGTT
CAGTGTTTAGTGGCTATTAAGTGTCCAGTGACTATTAAGTGTTTAGTGGGTATCAAATGATCAGT
GGCTATCAAGTGTTCAGTGGCCAGTAATCAGTGTCAGTGTCCACTCTGTTTTCCCCAGCTATGTC
CACTCCCGTCCACTTTGTCCACTTCTGTTCACTGTTTTCCACAGCTATTTCCACTTTTCCACTCC
ACTCACTCACCTCCTACATCAGCTCTGACAAAGACCTTAAACTATAGTCGTGCTATAATGGTGCG
CCGTGGGTCCACCGAGACTGCGCGGCTGGCCTGACCGGCTCCTGGCGCTCTCATGCTGTGACTGG
CTATGACTGGCTAACTTTCCTCGCTCGTCTACGACTCGGAGCTCTTGTTCGCCTTCAGGACGTCC
TTCTTCAACTGGTCGTAGGCGTCGCCCTCCTCGTCGTCGTCATCG
Right flanking sequence: Indices 93810 -- 94309
TGTCCCCGTTCTCGTCGTTCTCGTCGTTCTCGTCGTTGTCGTCGTCGTCGTCGGGATAGCCGCCC
AACTTCATCACAATCCGGTCGACAATCTCGTTCCAGTCCATCATGCCCCCCATCCCGATGTCGCC
GTACGCCCCTATCACCTTTTCCACCGGCCGGAGCACCTCGATCCACGGCATCTCCTCCTTGATGA
GCTGCAACTGCTTCTTGGTGGTGATGGCGTTGTACGAGTAGCTCACCATCGCAGGCGCCAACAAG
ATGGGAAACAGCGTGTTCCACGCACGGATCACGTTGGTCAACAAGTTGTCACAGATGCCCATCCC
GATCTTGGAGAGGGTGTTGGCGGTCAACGGGCACACCACGAGGATGTCGGCCCACCGGCGGAGCT
CGATGTGCAACACAGGGTCCAGTCTGCCCTTCCAGGTGGCCCACTCGTCGTCATCTCGCCACACT
TTGATCCCCTTGGCCTCCAACGCCGCCAACGTCTCCTGGCTGATG
Found at i:93854 original size:21 final size:21
Alignment explanation
Indices: 93746--93861 Score: 103
Period size: 21 Copynumber: 5.5 Consensus size: 21
93736 GTCGCCCTCC
*
93746 TCGTCGTCGTCATCGTCGTCA
1 TCGTCGTCGTCATCGTCGTCG
* *
93767 TCGTCATCGTCATCATCGTCG
1 TCGTCGTCGTCATCGTCGTCG
*
93788 TCGTCATCGTCATCGTCGTCG
1 TCGTCGTCGTCATCGTCGTCG
* **
93809 TTGTCCCCGTTC-TCGTCGTTC-
1 TCGTCGTCG-TCATCGTCG-TCG
* *
93830 TCGTCGTTC-TCGTCGTTGTCG
1 TCGTCG-TCGTCATCGTCGTCG
93851 TCGTCGTCGTC
1 TCGTCGTCGTC
93862 GGGATAGCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
20 6 0.08
21 67 0.86
22 5 0.06
ACGTcount: A:0.06, C:0.34, G:0.23, T:0.37
Consensus pattern (21 bp):
TCGTCGTCGTCATCGTCGTCG
Left flanking sequence: Indices 93246 -- 93745
CAAATCGTACCAGCTCTGCAATAAGCTTCCCCATTAGATCAAGACTAATTCACAAGATATAGCAA
GGTACAGTGTATGTTCAGTGTTTAGTGGCTATTAAGTGTCCAGTGACTATTAAGTGTTTAGTGGG
TATCAAATGATCAGTGGCTATCAAGTGTTCAGTGGCCAGTAATCAGTGTCAGTGTCCACTCTGTT
TTCCCCAGCTATGTCCACTCCCGTCCACTTTGTCCACTTCTGTTCACTGTTTTCCACAGCTATTT
CCACTTTTCCACTCCACTCACTCACCTCCTACATCAGCTCTGACAAAGACCTTAAACTATAGTCG
TGCTATAATGGTGCGCCGTGGGTCCACCGAGACTGCGCGGCTGGCCTGACCGGCTCCTGGCGCTC
TCATGCTGTGACTGGCTATGACTGGCTAACTTTCCTCGCTCGTCTACGACTCGGAGCTCTTGTTC
GCCTTCAGGACGTCCTTCTTCAACTGGTCGTAGGCGTCGCCCTCC
Right flanking sequence: Indices 93862 -- 94361
GGGATAGCCGCCCAACTTCATCACAATCCGGTCGACAATCTCGTTCCAGTCCATCATGCCCCCCA
TCCCGATGTCGCCGTACGCCCCTATCACCTTTTCCACCGGCCGGAGCACCTCGATCCACGGCATC
TCCTCCTTGATGAGCTGCAACTGCTTCTTGGTGGTGATGGCGTTGTACGAGTAGCTCACCATCGC
AGGCGCCAACAAGATGGGAAACAGCGTGTTCCACGCACGGATCACGTTGGTCAACAAGTTGTCAC
AGATGCCCATCCCGATCTTGGAGAGGGTGTTGGCGGTCAACGGGCACACCACGAGGATGTCGGCC
CACCGGCGGAGCTCGATGTGCAACACAGGGTCCAGTCTGCCCTTCCAGGTGGCCCACTCGTCGTC
ATCTCGCCACACTTTGATCCCCTTGGCCTCCAACGCCGCCAACGTCTCCTGGCTGATGAAGTGGA
CCAGCAGTTCCGTCAAAATGAGCTGGATGCGGATGCGCTGGCCGT
Found at i:93859 original size:9 final size:9
Alignment explanation
Indices: 93746--93862 Score: 87
Period size: 9 Copynumber: 13.0 Consensus size: 9
93736 GTCGCCCTCC
93746 TCGTCGTCG
1 TCGTCGTCG
*
93755 TCATCGTCG
1 TCGTCGTCG
* *
93764 TCATCGTCA
1 TCGTCGTCG
* *
93773 TCGTCATCA
1 TCGTCGTCG
93782 TCGTCGTCG
1 TCGTCGTCG
* *
93791 TCATCGTCA
1 TCGTCGTCG
93800 TCGTCGTCG
1 TCGTCGTCG
* **
93809 TTGTCCCCG
1 TCGTCGTCG
93818 TTC-TCGTCG
1 -TCGTCGTCG
93827 TTC-TCGTCG
1 -TCGTCGTCG
93836 TTC-TCGTCG
1 -TCGTCGTCG
*
93845 TTGTCGTCG
1 TCGTCGTCG
93854 TCGTCGTCG
1 TCGTCGTCG
93863 GGATAGCCGC
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
8 1 0.01
9 86 0.98
10 1 0.01
ACGTcount: A:0.06, C:0.33, G:0.24, T:0.37
Consensus pattern (9 bp):
TCGTCGTCG
Left flanking sequence: Indices 93246 -- 93745
CAAATCGTACCAGCTCTGCAATAAGCTTCCCCATTAGATCAAGACTAATTCACAAGATATAGCAA
GGTACAGTGTATGTTCAGTGTTTAGTGGCTATTAAGTGTCCAGTGACTATTAAGTGTTTAGTGGG
TATCAAATGATCAGTGGCTATCAAGTGTTCAGTGGCCAGTAATCAGTGTCAGTGTCCACTCTGTT
TTCCCCAGCTATGTCCACTCCCGTCCACTTTGTCCACTTCTGTTCACTGTTTTCCACAGCTATTT
CCACTTTTCCACTCCACTCACTCACCTCCTACATCAGCTCTGACAAAGACCTTAAACTATAGTCG
TGCTATAATGGTGCGCCGTGGGTCCACCGAGACTGCGCGGCTGGCCTGACCGGCTCCTGGCGCTC
TCATGCTGTGACTGGCTATGACTGGCTAACTTTCCTCGCTCGTCTACGACTCGGAGCTCTTGTTC
GCCTTCAGGACGTCCTTCTTCAACTGGTCGTAGGCGTCGCCCTCC
Right flanking sequence: Indices 93863 -- 94362
GGATAGCCGCCCAACTTCATCACAATCCGGTCGACAATCTCGTTCCAGTCCATCATGCCCCCCAT
CCCGATGTCGCCGTACGCCCCTATCACCTTTTCCACCGGCCGGAGCACCTCGATCCACGGCATCT
CCTCCTTGATGAGCTGCAACTGCTTCTTGGTGGTGATGGCGTTGTACGAGTAGCTCACCATCGCA
GGCGCCAACAAGATGGGAAACAGCGTGTTCCACGCACGGATCACGTTGGTCAACAAGTTGTCACA
GATGCCCATCCCGATCTTGGAGAGGGTGTTGGCGGTCAACGGGCACACCACGAGGATGTCGGCCC
ACCGGCGGAGCTCGATGTGCAACACAGGGTCCAGTCTGCCCTTCCAGGTGGCCCACTCGTCGTCA
TCTCGCCACACTTTGATCCCCTTGGCCTCCAACGCCGCCAACGTCTCCTGGCTGATGAAGTGGAC
CAGCAGTTCCGTCAAAATGAGCTGGATGCGGATGCGCTGGCCGTA
Found at i:96033 original size:10 final size:10
Alignment explanation
Indices: 95989--96044 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
95979 CGCACGCGTC
95989 CACCCCACCA
1 CACCCCACCA
95999 TCACCACCACCA
1 -CACC-CCACCA
*
96011 CA--CTACCA
1 CACCCCACCA
96019 CACCCCACCA
1 CACCCCACCA
*
96029 GACCCCACCA
1 CACCCCACCA
*
96039 CGCCCC
1 CACCCC
96045 CAACGAACCT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 7 0.19
10 18 0.49
11 6 0.16
12 6 0.16
ACGTcount: A:0.29, C:0.64, G:0.04, T:0.04
Consensus pattern (10 bp):
CACCCCACCA
Left flanking sequence: Indices 95489 -- 95988
TGTAATGGCTATCACGGTTCGCTCTCACCGAGCAGATCAGGGTTCGATTCCCTGCTTCGGAGTTT
CTTTTTGCTGCCTGGCGAGCATCTTTTTGCGACTGGAAAACCTACTGCGGGTGTCTCTGTTGTCT
TTTTTTAGAAATCCTGGTGTTTTGGTCATGTAATGTGTGTTTATGAGGATTGAGAGTGGTTGTAT
TGTCTCGCACAAACCCAATAACCAATCCTACTCTACTGCATTGTCTCGGATTATCCATTCCCGCC
CATTTCCTTTTCAGTCTCTACATTTCTCCCTACATTCCGGCCTTCCCCACTACCCCCCTGGTTCA
ATTCCAACCTTTTCCACAAATTCCACAATAACAAGAAAAAACACATAGCCCACCAGTCCGTCCAA
CTAGCGTATTACACACTCCCATACGACACTCTTACTACCCCCACTCTCTACGTATCTCGCAGCCT
TACCCTCCACCCATCTCATCTCGACGCGTCTAACGCGCACGCGTC
Right flanking sequence: Indices 96045 -- 96544
CAACGAACCTGGCCAGGCGTCCCACCCCATGCCATGAGGCTCATTCTCCACACAAACAACCCCGC
GTCGCTTCGGACCACCCTCGGGCTCATCCTGGGCCTCCGCAAACAGGTCACCTTCCGGTGCACCG
AAAAGTACATGGTGATCATCTCCGTCAACGAACGCGCGACGGAGGCAGAGCCCCAGGTGTGGTGC
CGGCTCAAGATGCTGCTGGTGTTCCACGAAGTCAACGTAAAGTCTGTTCGCGACAACATCGTGGA
GTTCGAGGTGAATGTCGACCAGCTCCTCCTGGTGCTAAAGACCTTCGATCGCGAGCTGGCAGACA
CCCTAGTGATGAAGCTCCAGCGCCAGGAGGGCACCCAGCGGGACCTGGAGAACCGCAGAGTGGCG
TCGTTGGCGCTCCTATACACCAGCACCAACGCCATGGGCACCGCTGACGTCACCCACACCTACAA
GCTCCCCACCCGCATTTTGTCCGCCCTGAGCTCTGTGAGCCAGAT
Found at i:97206 original size:3 final size:3
Alignment explanation
Indices: 97200--97239 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
97190 AGCCCAGTGT
** *
97200 TGG TGG TGG TGG TGG TGG CCG TGG TGG TGG TCG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T
97240 AGTGACCATC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.07, G:0.60, T:0.33
Consensus pattern (3 bp):
TGG
Left flanking sequence: Indices 96700 -- 97199
AGGGCAAGTTCCGGGTCACCATCACCTACAACGAGAAGATCAAGCAGATCCAGACGGCGGAAATA
GGCAACAACCCCCCACCACGCGTAGACCGGGCACGAGCCAGCGTCAAGGTGGCCGACTGGCTCGG
CACCGCCAAGCTCGTGGGCACGTGCCGCTCCAACTACTTCGTGTTTGCCGACCGCGACTGTGTGC
TCCACTCGCACTTGGAGGACAACAACGACGTCGAGCTCAAGTACTACATCAACGGGTTCAATGTC
AATATCGATTAACTAGCACTAGATAGAACAACAACCAGAACACAAACCAGAGGCACGCGGTAAAC
ACGAACCAGAACACACAGCGGAAAAGTAGTCGGAGAAACATGGCGTCCGCAAGGGGACCCCCCGA
TTCATATAGTGAAATTCTCGGAAATAAGTGCCGCGTCGAGTGGTTGCTACAATAGTGGGGTGATG
GGGAGCGGAGGAGGGCGTAGTGGGTGCGTAGTAGGAGCCCAGTGT
Right flanking sequence: Indices 97240 -- 97739
AGTGACCATCAATGGGTCAAACCCACTCAAACCACTCAATTGAGACGCATGACCCCACGAAATGA
TACCAGTCCCGTTGTGTTCCTTGATGGACTCGGGAATGTCCAGTTCCGAGCTTCTGGTGCACCCT
TCCTTCCCCCTCCTGTAGCCAAGACCTGAATTTCACCTGGATCACCCCATCGATCGATGAAACAG
GCCGTAATCGGCAACAGAAGAGCGAGCGCTCGGGAATATGGTCACAAAACGCACGGGGGCCCTGA
TTTCCCCACATCGGTTCGTATGCTAGCGATGCCAATCAGGCACTCAGTTGTAATTATGGTTAGGA
GAATGCTAAGAGGGCGGGATGGACAAGACGCGTTCGTCACAGAGAACGTCACAGAGTACAACGTC
ACAGACAGTGAAAAAATATCGGAGCCCTTTGTCCCACTGTGATCTACGCATCAGACCTAGTCACG
ACCATCAGATACCAGGAACAGATCACCGAACATAGAAACCTTAAA
Found at i:97217 original size:12 final size:12
Alignment explanation
Indices: 97200--97239 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
97190 AGCCCAGTGT
*
97200 TGGTGGTGGTGG
1 TGGTGGTCGTGG
*
97212 TGGTGGCCGTGG
1 TGGTGGTCGTGG
97224 TGGTGGTCGTGG
1 TGGTGGTCGTGG
97236 TGGT
1 TGGT
97240 AGTGACCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.07, G:0.60, T:0.33
Consensus pattern (12 bp):
TGGTGGTCGTGG
Left flanking sequence: Indices 96700 -- 97199
AGGGCAAGTTCCGGGTCACCATCACCTACAACGAGAAGATCAAGCAGATCCAGACGGCGGAAATA
GGCAACAACCCCCCACCACGCGTAGACCGGGCACGAGCCAGCGTCAAGGTGGCCGACTGGCTCGG
CACCGCCAAGCTCGTGGGCACGTGCCGCTCCAACTACTTCGTGTTTGCCGACCGCGACTGTGTGC
TCCACTCGCACTTGGAGGACAACAACGACGTCGAGCTCAAGTACTACATCAACGGGTTCAATGTC
AATATCGATTAACTAGCACTAGATAGAACAACAACCAGAACACAAACCAGAGGCACGCGGTAAAC
ACGAACCAGAACACACAGCGGAAAAGTAGTCGGAGAAACATGGCGTCCGCAAGGGGACCCCCCGA
TTCATATAGTGAAATTCTCGGAAATAAGTGCCGCGTCGAGTGGTTGCTACAATAGTGGGGTGATG
GGGAGCGGAGGAGGGCGTAGTGGGTGCGTAGTAGGAGCCCAGTGT
Right flanking sequence: Indices 97240 -- 97739
AGTGACCATCAATGGGTCAAACCCACTCAAACCACTCAATTGAGACGCATGACCCCACGAAATGA
TACCAGTCCCGTTGTGTTCCTTGATGGACTCGGGAATGTCCAGTTCCGAGCTTCTGGTGCACCCT
TCCTTCCCCCTCCTGTAGCCAAGACCTGAATTTCACCTGGATCACCCCATCGATCGATGAAACAG
GCCGTAATCGGCAACAGAAGAGCGAGCGCTCGGGAATATGGTCACAAAACGCACGGGGGCCCTGA
TTTCCCCACATCGGTTCGTATGCTAGCGATGCCAATCAGGCACTCAGTTGTAATTATGGTTAGGA
GAATGCTAAGAGGGCGGGATGGACAAGACGCGTTCGTCACAGAGAACGTCACAGAGTACAACGTC
ACAGACAGTGAAAAAATATCGGAGCCCTTTGTCCCACTGTGATCTACGCATCAGACCTAGTCACG
ACCATCAGATACCAGGAACAGATCACCGAACATAGAAACCTTAAA
Found at i:99298 original size:10 final size:8
Alignment explanation
Indices: 99255--99436 Score: 154
Period size: 8 Copynumber: 23.9 Consensus size: 8
99245 AGCTAGAGCT
*
99255 AGAGCTAA
1 AGAGCTAG
99263 AGAGCTAG
1 AGAGCTAG
99271 AGAG-TGAG
1 AGAGCT-AG
99279 AGAGCTAG
1 AGAGCTAG
99287 AGTA-CTAG
1 AG-AGCTAG
99295 AGAGCTAG
1 AGAGCTAG
*
99303 AGAGCCAG
1 AGAGCTAG
*
99311 AGAGCTGG
1 AGAGCTAG
*
99319 GGAGCTAG
1 AGAGCTAG
99327 -GAGCTA-
1 AGAGCTAG
99333 AGAGCTAG
1 AGAGCTAG
99341 AGAGCTAG
1 AGAGCTAG
*
99349 AGTGCTAG
1 AGAGCTAG
*
99357 AAAGCTATG
1 AGAGCTA-G
99366 -GAGCTAG
1 AGAGCTAG
*
99373 AGAGCTAT
1 AGAGCTAG
*
99381 AGACCT--
1 AGAGCTAG
99387 AG-GCTAG
1 AGAGCTAG
99394 -GAGCTA-
1 AGAGCTAG
99400 AGAGCTAG
1 AGAGCTAG
99408 -GAGCTA-
1 AGAGCTAG
*
99414 AGAGCTAC
1 AGAGCTAG
* *
99422 AGAGCAAC
1 AGAGCTAG
99430 AGAGCTA
1 AGAGCTA
99437 CAAAGCTACA
Statistics
Matches: 144, Mismatches: 15, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
5 2 0.01
6 3 0.02
7 37 0.26
8 99 0.69
9 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.35, T:0.14
Consensus pattern (8 bp):
AGAGCTAG
Left flanking sequence: Indices 98755 -- 99254
CTGGGCGACATCATGGACTGGACGGGGCCCGGGATCTGGCTGGACTACGTATTCCTCTACCTCAA
CAACATCATGCAGCCGGCGGAGAACTTTGGCACCTCCAAGCGCGACGAGGTGATTACCTGGCGGT
TTTTCACCGGGATCCGCCAGCCGGTGGTGATTGACGACGTGATGGTGTTGCCGATCACCTCGTTC
AGTCCCGATGTGGGCCAGATGGGCGCTGGGTCCTCGCACGATGCGTTGGCGTACGTCAAACACAT
GTTCCAGGGCAGCTGGAAGACCGACGGCACGGGCCAGGACCCGGACCAGCCGAGAAAGCAGCATT
AGTGGGTGTGGAAGAATAGCGGGAGAATTGGGATTTGAGTTATATGGCTAATGATCGCTATTTAC
CACCTGTCTATTTAAGACCTTGCAACCTACATACTCACAATACATAACGTTGAGAAATATAGAAC
ATGTTCATTATTTATATAGCAAGCTCGAGAGCTTGAGCTAGAGCT
Right flanking sequence: Indices 99437 -- 99936
CAAAGCTACATGTGACTCTGGATATGGCAATGCCTCGACTATTTTAGATTTAGTACTCTCCTACT
GGTCCTTAATATTTTGCAGCCATTTTGACAGCCAGAAAATATGTCAAGTATTTTATACCACCGAA
GATTGCAACCAACCCATAGCAATGCGTAAGTGGATAGTATAAGGCACCAAAACAACAAGACACCA
AAATAAGACACCAAAACAAGAAACCGAAACAAGACACCAGAACAAGCCTCCAAAATAAGACACCA
TAATCCCCCAAAACAATACGACTTACGTCTGTTTATTCACGTTATAACTTCACCCATTACTTCTA
CCACTCTAGTTCCTTCACCAACGCAGGGTGCAACTTCTCCATCTCCTCGAGCTCGTGCCCAGTCT
TGATCCGCTCGAAATACACCTGGCACAGCTGGTTGCAGCACTCCAGCGCCTGGTCGATCCGGGCC
CCCTCCACGTTGTTCAGCACACACGTGTTGCACGTGCCCATGAAA
Found at i:99632 original size:16 final size:16
Alignment explanation
Indices: 99611--99650 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 16
99601 TAGTATAAGG
99611 CACCAAAACAACAAGA
1 CACCAAAACAACAAGA
*
99627 CACC--AA-AATAAGA
1 CACCAAAACAACAAGA
99640 CACCAAAACAA
1 CACCAAAACAA
99651 GAAACCGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 6
0.74 0.04 0.22
Matches are distributed among these distances:
13 10 0.50
14 2 0.10
15 2 0.10
16 6 0.30
ACGTcount: A:0.62, C:0.30, G:0.05, T:0.03
Consensus pattern (16 bp):
CACCAAAACAACAAGA
Left flanking sequence: Indices 99111 -- 99610
GATTTGAGTTATATGGCTAATGATCGCTATTTACCACCTGTCTATTTAAGACCTTGCAACCTACA
TACTCACAATACATAACGTTGAGAAATATAGAACATGTTCATTATTTATATAGCAAGCTCGAGAG
CTTGAGCTAGAGCTAGAGCTAAAGAGCTAGAGAGTGAGAGAGCTAGAGTACTAGAGAGCTAGAGA
GCCAGAGAGCTGGGGAGCTAGGAGCTAAGAGCTAGAGAGCTAGAGTGCTAGAAAGCTATGGAGCT
AGAGAGCTATAGACCTAGGCTAGGAGCTAAGAGCTAGGAGCTAAGAGCTACAGAGCAACAGAGCT
ACAAAGCTACATGTGACTCTGGATATGGCAATGCCTCGACTATTTTAGATTTAGTACTCTCCTAC
TGGTCCTTAATATTTTGCAGCCATTTTGACAGCCAGAAAATATGTCAAGTATTTTATACCACCGA
AGATTGCAACCAACCCATAGCAATGCGTAAGTGGATAGTATAAGG
Right flanking sequence: Indices 99651 -- 100150
GAAACCGAAACAAGACACCAGAACAAGCCTCCAAAATAAGACACCATAATCCCCCAAAACAATAC
GACTTACGTCTGTTTATTCACGTTATAACTTCACCCATTACTTCTACCACTCTAGTTCCTTCACC
AACGCAGGGTGCAACTTCTCCATCTCCTCGAGCTCGTGCCCAGTCTTGATCCGCTCGAAATACAC
CTGGCACAGCTGGTTGCAGCACTCCAGCGCCTGGTCGATCCGGGCCCCCTCCACGTTGTTCAGCA
CACACGTGTTGCACGTGCCCATGAAATCAAGAAACTTGCGCTGTTTCGCCCGGTGGGTCGCCATC
ACCTTGCCGATGGTGGCCGCCTCGTTGGCCAAGCACAGCCTGCAGAAGTGCTCGGACTGGTCGAG
CGCCCGGCCACACACCACGCACTGGTGGCGCTTCAAGAAGCCCTGGAACCCAATCACCTCGGGAG
CCGCCACCACCTTAGGGAGCTGGCTGTACCAGCCCTTAACGTCAG
Found at i:99641 original size:13 final size:13
Alignment explanation
Indices: 99620--99696 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
99610 GCACCAAAAC
99620 AACAAGACACCAA
1 AACAAGACACCAA
*
99633 AATAAGACACCAA
1 AACAAGACACCAA
* *
99646 AACAAGAAACCGA
1 AACAAGACACCAA
*
99659 AACAAGACACCAG
1 AACAAGACACCAA
* *
99672 AACAAGCCTCCAA
1 AACAAGACACCAA
*
99685 AATAAGACACCA
1 AACAAGACACCA
99697 TAATCCCCCA
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.57, C:0.29, G:0.10, T:0.04
Consensus pattern (13 bp):
AACAAGACACCAA
Left flanking sequence: Indices 99120 -- 99619
TATATGGCTAATGATCGCTATTTACCACCTGTCTATTTAAGACCTTGCAACCTACATACTCACAA
TACATAACGTTGAGAAATATAGAACATGTTCATTATTTATATAGCAAGCTCGAGAGCTTGAGCTA
GAGCTAGAGCTAAAGAGCTAGAGAGTGAGAGAGCTAGAGTACTAGAGAGCTAGAGAGCCAGAGAG
CTGGGGAGCTAGGAGCTAAGAGCTAGAGAGCTAGAGTGCTAGAAAGCTATGGAGCTAGAGAGCTA
TAGACCTAGGCTAGGAGCTAAGAGCTAGGAGCTAAGAGCTACAGAGCAACAGAGCTACAAAGCTA
CATGTGACTCTGGATATGGCAATGCCTCGACTATTTTAGATTTAGTACTCTCCTACTGGTCCTTA
ATATTTTGCAGCCATTTTGACAGCCAGAAAATATGTCAAGTATTTTATACCACCGAAGATTGCAA
CCAACCCATAGCAATGCGTAAGTGGATAGTATAAGGCACCAAAAC
Right flanking sequence: Indices 99697 -- 100196
TAATCCCCCAAAACAATACGACTTACGTCTGTTTATTCACGTTATAACTTCACCCATTACTTCTA
CCACTCTAGTTCCTTCACCAACGCAGGGTGCAACTTCTCCATCTCCTCGAGCTCGTGCCCAGTCT
TGATCCGCTCGAAATACACCTGGCACAGCTGGTTGCAGCACTCCAGCGCCTGGTCGATCCGGGCC
CCCTCCACGTTGTTCAGCACACACGTGTTGCACGTGCCCATGAAATCAAGAAACTTGCGCTGTTT
CGCCCGGTGGGTCGCCATCACCTTGCCGATGGTGGCCGCCTCGTTGGCCAAGCACAGCCTGCAGA
AGTGCTCGGACTGGTCGAGCGCCCGGCCACACACCACGCACTGGTGGCGCTTCAAGAAGCCCTGG
AACCCAATCACCTCGGGAGCCGCCACCACCTTAGGGAGCTGGCTGTACCAGCCCTTAACGTCAGC
GCCCATGAGGTTGAAGATCCGCTCGAGCGGCGGACTCAACACCCG
Found at i:102838 original size:12 final size:12
Alignment explanation
Indices: 102799--102850 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
102789 CTCGCCCTCG
102799 AGCTTCTTCTCA
1 AGCTTCTTCTCA
** *
102811 AGCCCCTCCTCA
1 AGCTTCTTCTCA
*
102823 AGCTTCTTCTCG
1 AGCTTCTTCTCA
102835 AGCTTCTTCTCA
1 AGCTTCTTCTCA
102847 AGCT
1 AGCT
102851 CCCCTTCCGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.15, C:0.38, G:0.12, T:0.35
Consensus pattern (12 bp):
AGCTTCTTCTCA
Left flanking sequence: Indices 102299 -- 102798
CGAGCCACTGGGCCACCTCTGCTGGGTCTGGAGGCGGCTTGACGTAGCGCCACCGCCGGAGCTCT
CGCTTCTGGCGCATGGTCTTGGCGAGCCACAGCGACATCGGGAGCACCGGGAGCGTGGCCTCAGA
GTTGACGGGCACCACATGACGGCGGTTGGAGAACACAAACGCCCGCTCGGGCACGTCGCCCGGGT
TGTCGTACGTGGGCACGGGCCAGTCGATCTTGAGCATCCCCTGGGCAATGAACTCGCGGTCGAAC
TCCACGGGGTCCGAGAGCACCGAGGGGATGGGGACCCTGTAGCGGCCGCCGGTGCCTGGCTCCGA
GGAGTCTGACGAGAACGAGCTGAAGAACGACGACCGGAGCTGGAACGGGCGCTGGGTGACGATGG
CGGTGTCCACCTCGGCCACCTCGACGTCGTCCACGGTATCCACCTCGACGTCGTTGTCCACAGTC
TCCACCCCTGTCTCCACTACGGTCTCCAGGTCCGACTCGCCCTCG
Right flanking sequence: Indices 102851 -- 103350
CCCCTTCCGGCTCCTTCGAAGCCTCCCTCGGGAACTCAAACAGCGGCTCCTTGGGCCGCGGCACG
TCGTCCGCTAGCAACAACGCCAAGTCGTCGTCGCTGAACCAGTCGGACCCGCTCAGCGCGCTGCG
CACGAGCTCCTCGTCCTCCACGACGCTGTTCTCCACCACCGAGTCCTCCACCGTGCTCACCTGCC
CGTCGTCGCTGGGCTCGGACACCGCAAAAAGGTCGCGGGCCAGCCGCCACTGCACCAAGTCGGAG
CCCATGCGCATGGCGTAGGTGTGGTAGCGGTGGTGGGCGTCGAGGTCCACCAGCTCAAAACAGGT
GGGCACCTTGTAGTCAGGACAAAACTTCTTCTCGTACACCTTCATGTCGACGTTGGTGGCGCCGT
TCTGGCGGATGGCGTACTCCAAGAGGCTGTCGAGCTCCAGCTGGTTCAGCCACACCAGCTGGCCC
ATCCCGTAGTACTCGGACCCGTGGTCCACCAGCGCCAGGAACGGC
Found at i:104311 original size:6 final size:6
Alignment explanation
Indices: 104300--104339 Score: 53
Period size: 6 Copynumber: 6.2 Consensus size: 6
104290 GAAACGGAGA
104300 AAAGGG AAAGGGAG AAAGGG AAAGGG AAATGGG AAAGGG A
1 AAAGGG AAA-GG-G AAAGGG AAAGGG AAA-GGG AAAGGG A
104340 GAGAAAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 17 0.55
7 10 0.32
8 4 0.13
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (6 bp):
AAAGGG
Left flanking sequence: Indices 103800 -- 104299
CTTGCGGCCGTCGTCCAACCGGGCCGTGCCCGCGTGGAACATCCCGGCCACCCGCGTCTTCTGCT
GCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGGTAGCTGGGGATGTACCCGTAGATCGGGAGC
CCCTTGACGACAGCAACCCTGAGCACCAACGGGCTGGCGGGGGCTCCGGGGCCCGTGGCCACCTG
CTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACGCGCTGTCGGTCCACCTGGCCTCGTCCTTCT
CTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTGTGGACGTGGACCATCGCGGGCACCACCACG
GGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCGGACCAGGCCGTACACGCGGATCACGGGGGT
CTGCTTGGCCCGGCCATACACGTAGTCGATTTTGGTGGGCACGTGCTGGTAGCTGTCGTAGTCGC
TCACCAACACGCGCATAAAAGATGGTCGGGTGGTGGAAACGGAGA
Right flanking sequence: Indices 104340 -- 104839
GAGAAAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAG
AAGGAGGAGAAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTG
TTGGTTCCTATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTA
CAGGAATGCAAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAG
AGAGCCTTCCATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTAT
TTCGTACCCGATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGG
CCCCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGAAACGGAGA
GAGAGAGAGACGGAGAGTGAGAGAGACGGAAAGAGAGAGATAGAG
Found at i:104319 original size:14 final size:14
Alignment explanation
Indices: 104289--104341 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
104279 GTCGGGTGGT
*
104289 GGAAACGGAGAAAAG
1 GGAAAGGGAG-AAAG
104304 GGAAAGGGAGAAAG
1 GGAAAGGGAGAAAG
*
104318 GGAAAGGGA-AATG
1 GGAAAGGGAGAAAG
104331 GGAAAGGGAGA
1 GGAAAGGGAGA
104342 GAAAGAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
13 12 0.34
14 14 0.40
15 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.47, T:0.02
Consensus pattern (14 bp):
GGAAAGGGAGAAAG
Left flanking sequence: Indices 103789 -- 104288
TACACCAACGGCTTGCGGCCGTCGTCCAACCGGGCCGTGCCCGCGTGGAACATCCCGGCCACCCG
CGTCTTCTGCTGCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGGTAGCTGGGGATGTACCCGT
AGATCGGGAGCCCCTTGACGACAGCAACCCTGAGCACCAACGGGCTGGCGGGGGCTCCGGGGCCC
GTGGCCACCTGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACGCGCTGTCGGTCCACCTGGC
CTCGTCCTTCTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTGTGGACGTGGACCATCGCGG
GCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCGGACCAGGCCGTACACGCGG
ATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGATTTTGGTGGGCACGTGCTGGTAGCT
GTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGGGTGGT
Right flanking sequence: Indices 104342 -- 104841
GAAAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAGAA
GGAGGAGAAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTT
GGTTCCTATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACA
GGAATGCAAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAGAG
AGCCTTCCATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTATTT
CGTACCCGATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCC
CCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGAAACGGAGAGA
GAGAGAGACGGAGAGTGAGAGAGACGGAAAGAGAGAGATAGAGAG
Found at i:104335 original size:13 final size:13
Alignment explanation
Indices: 104298--104339 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
104288 TGGAAACGGA
104298 GAAAAGGGAAAGG
1 GAAAAGGGAAAGG
104311 GAGAAAGGGAAAGG
1 GA-AAAGGGAAAGG
*
104325 GAAATGGGAAAGG
1 GAAAAGGGAAAGG
104338 GA
1 GA
104340 GAGAAAGAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 14 0.52
14 13 0.48
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (13 bp):
GAAAAGGGAAAGG
Left flanking sequence: Indices 103798 -- 104297
GGCTTGCGGCCGTCGTCCAACCGGGCCGTGCCCGCGTGGAACATCCCGGCCACCCGCGTCTTCTG
CTGCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGGTAGCTGGGGATGTACCCGTAGATCGGGA
GCCCCTTGACGACAGCAACCCTGAGCACCAACGGGCTGGCGGGGGCTCCGGGGCCCGTGGCCACC
TGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACGCGCTGTCGGTCCACCTGGCCTCGTCCTT
CTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTGTGGACGTGGACCATCGCGGGCACCACCA
CGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCGGACCAGGCCGTACACGCGGATCACGGGG
GTCTGCTTGGCCCGGCCATACACGTAGTCGATTTTGGTGGGCACGTGCTGGTAGCTGTCGTAGTC
GCTCACCAACACGCGCATAAAAGATGGTCGGGTGGTGGAAACGGA
Right flanking sequence: Indices 104340 -- 104839
GAGAAAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAG
AAGGAGGAGAAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTG
TTGGTTCCTATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTA
CAGGAATGCAAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAG
AGAGCCTTCCATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTAT
TTCGTACCCGATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGG
CCCCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGAAACGGAGA
GAGAGAGAGACGGAGAGTGAGAGAGACGGAAAGAGAGAGATAGAG
Found at i:104351 original size:10 final size:10
Alignment explanation
Indices: 104332--104431 Score: 69
Period size: 10 Copynumber: 10.0 Consensus size: 10
104322 AGGGAAATGG
*
104332 GAAAGGGAGA
1 GAAAGAGAGA
104342 GAAAGAGAGA
1 GAAAGAGAGA
**
104352 GAGGGAGAGA
1 GAAAGAGAGA
*
104362 GAGAGAGAGA
1 GAAAGAGAGA
*
104372 GAGAGAGAGA
1 GAAAGAGAGA
*
104382 GAGAGAGAGAA
1 GAAAGAGAG-A
* *
104393 GAGATGGGAGA
1 GA-AAGAGAGA
*
104404 GAAGGAG-GA
1 GAAAGAGAGA
* *
104413 G-AAGGGAGG
1 GAAAGAGAGA
104422 GAAAGAGAGA
1 GAAAGAGAGA
104432 AACGGAGAGA
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
8 3 0.04
9 5 0.07
10 54 0.75
11 6 0.08
12 4 0.06
ACGTcount: A:0.48, C:0.00, G:0.51, T:0.01
Consensus pattern (10 bp):
GAAAGAGAGA
Left flanking sequence: Indices 103832 -- 104331
CGTGGAACATCCCGGCCACCCGCGTCTTCTGCTGCGGGTTGGTGAGGGTCACCTTGTACACCGGG
CGGTAGCTGGGGATGTACCCGTAGATCGGGAGCCCCTTGACGACAGCAACCCTGAGCACCAACGG
GCTGGCGGGGGCTCCGGGGCCCGTGGCCACCTGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCC
ACGCGCTGTCGGTCCACCTGGCCTCGTCCTTCTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAG
TTGTGGACGTGGACCATCGCGGGCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGAT
GCGGACCAGGCCGTACACGCGGATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGATTT
TGGTGGGCACGTGCTGGTAGCTGTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGGGTG
GTGGAAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGG
Right flanking sequence: Indices 104432 -- 104931
AACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTTGGTTCCTATATACTGGTTACACACT
TAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACAGGAATGCAAACCCGACCGGAGCATG
CAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAGAGAGCCTTCCATGTAGAATAGAACCTT
CCGACTACTGGGATCTTCATCTAATTCCAGAACCGTATTTCGTACCCGATCCGAGTAAGAATTCC
ATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCCCCTTGGCTTCTGACTCCGAGGTCGG
GTCTCAACAAGACGGATAGAGACAGAGAGAAACGGAGAGAGAGAGAGACGGAGAGTGAGAGAGAC
GGAAAGAGAGAGATAGAGAGAGACGATCAGAGAGAGACGGAGGGAGTTAGAGACAAAGACGGACA
CAGACAGAGAGGGAGAGAGAGAGAGAGACAGAGAGAATGAATTGT
Found at i:104358 original size:18 final size:18
Alignment explanation
Indices: 104335--104441 Score: 90
Period size: 18 Copynumber: 5.5 Consensus size: 18
104325 GAAATGGGAA
104335 AGGGAGAGAAAGAGAGAG
1 AGGGAGAGAAAGAGAGAG
104353 AGGGAGAGAGAGAGAGAGAG
1 AGGGAGAGA-A-AGAGAGAG
104373 AGAGAGAGAGAGAGAGAGAAGAG
1 AG-G-GAGAGA-A-AGAG-AGAG
*
104396 ATGGGAGAGAAGGAG-GAG
1 A-GGGAGAGAAAGAGAGAG
* *
104414 AAGGGAGGGAAAGAGAGAA
1 -AGGGAGAGAAAGAGAGAG
*
104433 ACGGAGAGA
1 AGGGAGAGA
104442 GAGACGGATA
Statistics
Matches: 75, Mismatches: 6, Indels: 16
0.77 0.06 0.16
Matches are distributed among these distances:
18 30 0.40
19 4 0.05
20 13 0.17
21 2 0.03
22 19 0.25
23 6 0.08
24 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.50, T:0.01
Consensus pattern (18 bp):
AGGGAGAGAAAGAGAGAG
Left flanking sequence: Indices 103835 -- 104334
GGAACATCCCGGCCACCCGCGTCTTCTGCTGCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGG
TAGCTGGGGATGTACCCGTAGATCGGGAGCCCCTTGACGACAGCAACCCTGAGCACCAACGGGCT
GGCGGGGGCTCCGGGGCCCGTGGCCACCTGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACG
CGCTGTCGGTCCACCTGGCCTCGTCCTTCTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTG
TGGACGTGGACCATCGCGGGCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCG
GACCAGGCCGTACACGCGGATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGATTTTGG
TGGGCACGTGCTGGTAGCTGTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGGGTGGTG
GAAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAA
Right flanking sequence: Indices 104442 -- 104941
GAGACGGATAGAGGTCGAGAGAGACGTGTTGGTTCCTATATACTGGTTACACACTTAGCCAAATA
CGGTAGGGACGTTATTATGAGGTAGTTACAGGAATGCAAACCCGACCGGAGCATGCAATCTACCT
TCCTGGATATTGTTCTACCATGTAGAAGAGAGCCTTCCATGTAGAATAGAACCTTCCGACTACTG
GGATCTTCATCTAATTCCAGAACCGTATTTCGTACCCGATCCGAGTAAGAATTCCATCATGGCTA
AAACGACAAGAAAACTCCCAACCCTTGGCCCCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAA
GACGGATAGAGACAGAGAGAAACGGAGAGAGAGAGAGACGGAGAGTGAGAGAGACGGAAAGAGAG
AGATAGAGAGAGACGATCAGAGAGAGACGGAGGGAGTTAGAGACAAAGACGGACACAGACAGAGA
GGGAGAGAGAGAGAGAGACAGAGAGAATGAATTGTAAAGGAGAAA
Found at i:104364 original size:14 final size:14
Alignment explanation
Indices: 104345--104445 Score: 97
Period size: 14 Copynumber: 7.5 Consensus size: 14
104335 AGGGAGAGAA
104345 AGAGAGAGAGGGAG
1 AGAGAGAGAGGGAG
*
104359 AGAGAGAGAGAGAG
1 AGAGAGAGAGGGAG
*
104373 AGAGAGAGAGAGAG
1 AGAGAGAGAGGGAG
104387 AGAGAAGAGATGGGAG
1 AGAG-AGAGA-GGGAG
104403 AGA-AG-GA-GGAG
1 AGAGAGAGAGGGAG
*
104414 A-AG-G-GAGGGAA
1 AGAGAGAGAGGGAG
* *
104425 AGAGAGAAACGGAG
1 AGAGAGAGAGGGAG
104439 AGAGAGA
1 AGAGAGA
104446 CGGATAGAGG
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
10 4 0.05
11 9 0.12
12 2 0.03
13 3 0.04
14 44 0.59
15 5 0.07
16 7 0.09
ACGTcount: A:0.48, C:0.01, G:0.50, T:0.01
Consensus pattern (14 bp):
AGAGAGAGAGGGAG
Left flanking sequence: Indices 103845 -- 104344
GGCCACCCGCGTCTTCTGCTGCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGGTAGCTGGGGA
TGTACCCGTAGATCGGGAGCCCCTTGACGACAGCAACCCTGAGCACCAACGGGCTGGCGGGGGCT
CCGGGGCCCGTGGCCACCTGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACGCGCTGTCGGT
CCACCTGGCCTCGTCCTTCTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTGTGGACGTGGA
CCATCGCGGGCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCGGACCAGGCCG
TACACGCGGATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGATTTTGGTGGGCACGTG
CTGGTAGCTGTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGGGTGGTGGAAACGGAGA
AAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGAGAGAA
Right flanking sequence: Indices 104446 -- 104945
CGGATAGAGGTCGAGAGAGACGTGTTGGTTCCTATATACTGGTTACACACTTAGCCAAATACGGT
AGGGACGTTATTATGAGGTAGTTACAGGAATGCAAACCCGACCGGAGCATGCAATCTACCTTCCT
GGATATTGTTCTACCATGTAGAAGAGAGCCTTCCATGTAGAATAGAACCTTCCGACTACTGGGAT
CTTCATCTAATTCCAGAACCGTATTTCGTACCCGATCCGAGTAAGAATTCCATCATGGCTAAAAC
GACAAGAAAACTCCCAACCCTTGGCCCCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACG
GATAGAGACAGAGAGAAACGGAGAGAGAGAGAGACGGAGAGTGAGAGAGACGGAAAGAGAGAGAT
AGAGAGAGACGATCAGAGAGAGACGGAGGGAGTTAGAGACAAAGACGGACACAGACAGAGAGGGA
GAGAGAGAGAGAGACAGAGAGAATGAATTGTAAAGGAGAAAGAGA
Found at i:104405 original size:2 final size:2
Alignment explanation
Indices: 104338--104396 Score: 93
Period size: 2 Copynumber: 30.0 Consensus size: 2
104328 ATGGGAAAGG
* *
104338 GA GA GA AA GA GA GA GA GG GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
104380 GA GA GA GA GA GA -A GA GA
1 GA GA GA GA GA GA GA GA GA
104397 TGGGAGAGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Left flanking sequence: Indices 103838 -- 104337
ACATCCCGGCCACCCGCGTCTTCTGCTGCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGGTAG
CTGGGGATGTACCCGTAGATCGGGAGCCCCTTGACGACAGCAACCCTGAGCACCAACGGGCTGGC
GGGGGCTCCGGGGCCCGTGGCCACCTGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACGCGC
TGTCGGTCCACCTGGCCTCGTCCTTCTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTGTGG
ACGTGGACCATCGCGGGCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCGGAC
CAGGCCGTACACGCGGATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGATTTTGGTGG
GCACGTGCTGGTAGCTGTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGGGTGGTGGAA
ACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGG
Right flanking sequence: Indices 104397 -- 104896
TGGGAGAGAAGGAGGAGAAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGA
GAGACGTGTTGGTTCCTATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGA
GGTAGTTACAGGAATGCAAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCA
TGTAGAAGAGAGCCTTCCATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAG
AACCGTATTTCGTACCCGATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCA
ACCCTTGGCCCCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGA
AACGGAGAGAGAGAGAGACGGAGAGTGAGAGAGACGGAAAGAGAGAGATAGAGAGAGACGATCAG
AGAGAGACGGAGGGAGTTAGAGACAAAGACGGACACAGACAGAGA
Found at i:104449 original size:12 final size:11
Alignment explanation
Indices: 104345--104414 Score: 71
Period size: 10 Copynumber: 6.6 Consensus size: 11
104335 AGGGAGAGAA
104345 AGAGAGAGAGG
1 AGAGAGAGAGG
104356 -GAGAGAGA-G
1 AGAGAGAGAGG
104365 AGAGAGAGA-G
1 AGAGAGAGAGG
104375 AGAGAGAGAGAG
1 AGAGAGAGAG-G
104387 AGAGAAGAGATGG
1 AGAG-AGAGA-GG
104400 -GAGAGA-AGG
1 AGAGAGAGAGG
104409 AG-GAGA
1 AGAGAGA
104415 AGGGAGGGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
9 7 0.13
10 28 0.53
11 3 0.06
12 8 0.15
13 6 0.11
14 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.51, T:0.01
Consensus pattern (11 bp):
AGAGAGAGAGG
Left flanking sequence: Indices 103845 -- 104344
GGCCACCCGCGTCTTCTGCTGCGGGTTGGTGAGGGTCACCTTGTACACCGGGCGGTAGCTGGGGA
TGTACCCGTAGATCGGGAGCCCCTTGACGACAGCAACCCTGAGCACCAACGGGCTGGCGGGGGCT
CCGGGGCCCGTGGCCACCTGCTCGTCGAGTTTTTTCGCCTGCGTCTCGAGCCACGCGCTGTCGGT
CCACCTGGCCTCGTCCTTCTCTAGGCACTCTACGTAGAAGTAGGGGAAGTAGTTGTGGACGTGGA
CCATCGCGGGCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGGGATGCGGACCAGGCCG
TACACGCGGATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGATTTTGGTGGGCACGTG
CTGGTAGCTGTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGGGTGGTGGAAACGGAGA
AAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGAGAGAA
Right flanking sequence: Indices 104415 -- 104914
AGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTTGGTTCCTA
TATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACAGGAATGCA
AACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAGAGAGCCTTCC
ATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTATTTCGTACCCG
ATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCCCCTTGGCT
TCTGACTCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGAAACGGAGAGAGAGAGAGA
CGGAGAGTGAGAGAGACGGAAAGAGAGAGATAGAGAGAGACGATCAGAGAGAGACGGAGGGAGTT
AGAGACAAAGACGGACACAGACAGAGAGGGAGAGAGAGAGAGAGA
Found at i:104613 original size:19 final size:19
Alignment explanation
Indices: 104589--104628 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
104579 TATTGTTCTA
*
104589 CCATGTAGAAGAGAGCCTT
1 CCATGTAGAAGAGAACCTT
*
104608 CCATGTAGAATAGAACCTT
1 CCATGTAGAAGAGAACCTT
104627 CC
1 CC
104629 GACTACTGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (19 bp):
CCATGTAGAAGAGAACCTT
Left flanking sequence: Indices 104089 -- 104588
TAGTTGTGGACGTGGACCATCGCGGGCACCACCACGGGGTCGGACCGCTTGGGGCCCGCGGGCGG
GATGCGGACCAGGCCGTACACGCGGATCACGGGGGTCTGCTTGGCCCGGCCATACACGTAGTCGA
TTTTGGTGGGCACGTGCTGGTAGCTGTCGTAGTCGCTCACCAACACGCGCATAAAAGATGGTCGG
GTGGTGGAAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGAGAGAAAGAG
AGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAGAAGGAGGAG
AAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTTGGTTCCT
ATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACAGGAATGC
AAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTA
Right flanking sequence: Indices 104629 -- 105128
GACTACTGGGATCTTCATCTAATTCCAGAACCGTATTTCGTACCCGATCCGAGTAAGAATTCCAT
CATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCCCCTTGGCTTCTGACTCCGAGGTCGGGT
CTCAACAAGACGGATAGAGACAGAGAGAAACGGAGAGAGAGAGAGACGGAGAGTGAGAGAGACGG
AAAGAGAGAGATAGAGAGAGACGATCAGAGAGAGACGGAGGGAGTTAGAGACAAAGACGGACACA
GACAGAGAGGGAGAGAGAGAGAGAGACAGAGAGAATGAATTGTAAAGGAGAAAGAGAAAAGCACC
TAAAAACCCAAAAGCCTCGATTGAAGTAGTAGACAGCAAAGGAAAATGGAAAGGAAAGAGCCAAC
AGATGGAATATCGAGAGCGCCTAGTACTATGGCCAACTAAAACCACACCCTAAAGTTTTCCCCAT
ACTGCCTCCATTGCTGCCTAGAGAGAGACAGAGATGTAAAGGGAG
Found at i:104799 original size:14 final size:14
Alignment explanation
Indices: 104780--104832 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
104770 GGATAGAGAC
104780 AGAGAGAAACGGAG
1 AGAGAGAAACGGAG
104794 AGAGAGAGAGACGGAG
1 AGAGAGA-A-ACGGAG
* *
104810 AGTGAGAGAGACGGAA
1 A--GAGAGAAACGGAG
104826 AGAGAGA
1 AGAGAGA
104833 GATAGAGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 13 0.39
15 1 0.03
16 13 0.39
18 6 0.18
ACGTcount: A:0.47, C:0.06, G:0.45, T:0.02
Consensus pattern (14 bp):
AGAGAGAAACGGAG
Left flanking sequence: Indices 104280 -- 104779
TCGGGTGGTGGAAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGAGAGAA
AGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAGAAGGA
GGAGAAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTTGGT
TCCTATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACAGGA
ATGCAAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAGAGAGC
CTTCCATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTATTTCGT
ACCCGATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCCCCT
TGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACGGATAGAGAC
Right flanking sequence: Indices 104833 -- 105332
GATAGAGAGAGACGATCAGAGAGAGACGGAGGGAGTTAGAGACAAAGACGGACACAGACAGAGAG
GGAGAGAGAGAGAGAGACAGAGAGAATGAATTGTAAAGGAGAAAGAGAAAAGCACCTAAAAACCC
AAAAGCCTCGATTGAAGTAGTAGACAGCAAAGGAAAATGGAAAGGAAAGAGCCAACAGATGGAAT
ATCGAGAGCGCCTAGTACTATGGCCAACTAAAACCACACCCTAAAGTTTTCCCCATACTGCCTCC
ATTGCTGCCTAGAGAGAGACAGAGATGTAAAGGGAGAGAAAAAGACCCAATAAACCTAAGCCTCA
ATGGATATAGCACACCACTGCTGGGGGGAAGCAATTCATCACAACAGGTTACCCGTGACGGAGGC
GAAAGGAATGGCATTCAATATTTATAGTTCAGCTCGAGAATCTGGCGACTACTTTTTTGGAACAC
TCGTTCAAGCTTACAAATCAACAGAGACAGAAAAGAAATGGAAAG
Found at i:104800 original size:4 final size:4
Alignment explanation
Indices: 104791--104922 Score: 56
Period size: 4 Copynumber: 32.5 Consensus size: 4
104781 GAGAGAAACG
* * *
104791 GAGA GAGA GAGA GACG- GAGA GTGA GAGA GACG- GAAA GAGA GAGA TAGA
1 GAGA GAGA GAGA GA-GA GAGA GAGA GAGA GA-GA GAGA GAGA GAGA GAGA
* * * * * *
104839 GAGA GACGA TCAGA GAGA GACG- GAGG GAGT TAGA GACA AAGA CG-GA
1 GAGA GA-GA -GAGA GAGA GA-GA GAGA GAGA GAGA GAGA GAGA -GAGA
* * * * *
104885 CACA GACA GAGA GGGA GAGA GAGA GAGA GACA GAGA GA
1 GAGA GAGA GAGA GAGA GAGA GAGA GAGA GAGA GAGA GA
104923 ATGAATTGTA
Statistics
Matches: 94, Mismatches: 24, Indels: 20
0.68 0.17 0.14
Matches are distributed among these distances:
3 2 0.02
4 84 0.89
5 7 0.07
6 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.43, T:0.04
Consensus pattern (4 bp):
GAGA
Left flanking sequence: Indices 104291 -- 104790
AAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGAGAGAAAGAGAGAGAGG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAGAAGGAGGAGAAGGGAG
GGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTTGGTTCCTATATACT
GGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACAGGAATGCAAACCCG
ACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAGAGAGCCTTCCATGTAG
AATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTATTTCGTACCCGATCCGA
GTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCCCCTTGGCTTCTGAC
TCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGAAACG
Right flanking sequence: Indices 104923 -- 105422
ATGAATTGTAAAGGAGAAAGAGAAAAGCACCTAAAAACCCAAAAGCCTCGATTGAAGTAGTAGAC
AGCAAAGGAAAATGGAAAGGAAAGAGCCAACAGATGGAATATCGAGAGCGCCTAGTACTATGGCC
AACTAAAACCACACCCTAAAGTTTTCCCCATACTGCCTCCATTGCTGCCTAGAGAGAGACAGAGA
TGTAAAGGGAGAGAAAAAGACCCAATAAACCTAAGCCTCAATGGATATAGCACACCACTGCTGGG
GGGAAGCAATTCATCACAACAGGTTACCCGTGACGGAGGCGAAAGGAATGGCATTCAATATTTAT
AGTTCAGCTCGAGAATCTGGCGACTACTTTTTTGGAACACTCGTTCAAGCTTACAAATCAACAGA
GACAGAAAAGAAATGGAAAGGAAAGAGCCAATCGAAATGAAAAGCGAAGCGCCTACGAGTGGCTT
CTCGACGAGGCCATCACCAAGGTCAACGTGTTGGACCCGCCCAAA
Found at i:104804 original size:10 final size:10
Alignment explanation
Indices: 104791--104922 Score: 56
Period size: 10 Copynumber: 13.0 Consensus size: 10
104781 GAGAGAAACG
104791 GAGAGAGAGA
1 GAGAGAGAGA
104801 GAGACG-GAGA
1 GAGA-GAGAGA
*
104811 GTGAGAGAGA
1 GAGAGAGAGA
*
104821 CG-GAAAGAGA
1 -GAGAGAGAGA
*
104831 GAGATAGAGA
1 GAGAGAGAGA
*
104841 GAGACGATCAGA
1 GAGA-GA-GAGA
104853 GAGAGACG-GA
1 GAGAGA-GAGA
* **
104863 GGGAGTTAGA
1 GAGAGAGAGA
* *
104873 GACAAAGACG-
1 GAGAGAGA-GA
* * *
104883 GACACAGACA
1 GAGAGAGAGA
*
104893 GAGAGGGAGA
1 GAGAGAGAGA
104903 GAGAGAGAGA
1 GAGAGAGAGA
*
104913 GACAGAGAGA
1 GAGAGAGAGA
104923 ATGAATTGTA
Statistics
Matches: 90, Mismatches: 23, Indels: 18
0.69 0.18 0.14
Matches are distributed among these distances:
9 2 0.02
10 75 0.83
11 6 0.07
12 7 0.08
ACGTcount: A:0.45, C:0.08, G:0.43, T:0.04
Consensus pattern (10 bp):
GAGAGAGAGA
Left flanking sequence: Indices 104291 -- 104790
AAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGAGAGAAAGAGAGAGAGG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAGAAGGAGGAGAAGGGAG
GGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTGTTGGTTCCTATATACT
GGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTACAGGAATGCAAACCCG
ACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAGAGAGCCTTCCATGTAG
AATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTATTTCGTACCCGATCCGA
GTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGGCCCCTTGGCTTCTGAC
TCCGAGGTCGGGTCTCAACAAGACGGATAGAGACAGAGAGAAACG
Right flanking sequence: Indices 104923 -- 105422
ATGAATTGTAAAGGAGAAAGAGAAAAGCACCTAAAAACCCAAAAGCCTCGATTGAAGTAGTAGAC
AGCAAAGGAAAATGGAAAGGAAAGAGCCAACAGATGGAATATCGAGAGCGCCTAGTACTATGGCC
AACTAAAACCACACCCTAAAGTTTTCCCCATACTGCCTCCATTGCTGCCTAGAGAGAGACAGAGA
TGTAAAGGGAGAGAAAAAGACCCAATAAACCTAAGCCTCAATGGATATAGCACACCACTGCTGGG
GGGAAGCAATTCATCACAACAGGTTACCCGTGACGGAGGCGAAAGGAATGGCATTCAATATTTAT
AGTTCAGCTCGAGAATCTGGCGACTACTTTTTTGGAACACTCGTTCAAGCTTACAAATCAACAGA
GACAGAAAAGAAATGGAAAGGAAAGAGCCAATCGAAATGAAAAGCGAAGCGCCTACGAGTGGCTT
CTCGACGAGGCCATCACCAAGGTCAACGTGTTGGACCCGCCCAAA
Found at i:104833 original size:14 final size:16
Alignment explanation
Indices: 104775--104834 Score: 84
Period size: 16 Copynumber: 3.8 Consensus size: 16
104765 AAGACGGATA
* *
104775 GAGACAGAGAGAAACG
1 GAGAGAGAGAGAGACG
104791 GAGAGAGAGAGAGACG
1 GAGAGAGAGAGAGACG
*
104807 GAGAGTGAGAGAGACG
1 GAGAGAGAGAGAGACG
*
104823 GAAAGAGAGAGA
1 GAGAGAGAGAGA
104835 TAGAGAGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.47, C:0.07, G:0.45, T:0.02
Consensus pattern (16 bp):
GAGAGAGAGAGAGACG
Left flanking sequence: Indices 104275 -- 104774
GATGGTCGGGTGGTGGAAACGGAGAAAAGGGAAAGGGAGAAAGGGAAAGGGAAATGGGAAAGGGA
GAGAAAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATGGGAGAG
AAGGAGGAGAAGGGAGGGAAAGAGAGAAACGGAGAGAGAGACGGATAGAGGTCGAGAGAGACGTG
TTGGTTCCTATATACTGGTTACACACTTAGCCAAATACGGTAGGGACGTTATTATGAGGTAGTTA
CAGGAATGCAAACCCGACCGGAGCATGCAATCTACCTTCCTGGATATTGTTCTACCATGTAGAAG
AGAGCCTTCCATGTAGAATAGAACCTTCCGACTACTGGGATCTTCATCTAATTCCAGAACCGTAT
TTCGTACCCGATCCGAGTAAGAATTCCATCATGGCTAAAACGACAAGAAAACTCCCAACCCTTGG
CCCCTTGGCTTCTGACTCCGAGGTCGGGTCTCAACAAGACGGATA
Right flanking sequence: Indices 104835 -- 105334
TAGAGAGAGACGATCAGAGAGAGACGGAGGGAGTTAGAGACAAAGACGGACACAGACAGAGAGGG
AGAGAGAGAGAGAGACAGAGAGAATGAATTGTAAAGGAGAAAGAGAAAAGCACCTAAAAACCCAA
AAGCCTCGATTGAAGTAGTAGACAGCAAAGGAAAATGGAAAGGAAAGAGCCAACAGATGGAATAT
CGAGAGCGCCTAGTACTATGGCCAACTAAAACCACACCCTAAAGTTTTCCCCATACTGCCTCCAT
TGCTGCCTAGAGAGAGACAGAGATGTAAAGGGAGAGAAAAAGACCCAATAAACCTAAGCCTCAAT
GGATATAGCACACCACTGCTGGGGGGAAGCAATTCATCACAACAGGTTACCCGTGACGGAGGCGA
AAGGAATGGCATTCAATATTTATAGTTCAGCTCGAGAATCTGGCGACTACTTTTTTGGAACACTC
GTTCAAGCTTACAAATCAACAGAGACAGAAAAGAAATGGAAAGGA
Found at i:106107 original size:21 final size:21
Alignment explanation
Indices: 106082--106126 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
106072 CCCCATCTCC
106082 ACGTCTCATCCCTCCCCCTCT
1 ACGTCTCATCCCTCCCCCTCT
106103 ACGTCTCATCCCTCCCCCTCT
1 ACGTCTCATCCCTCCCCCTCT
106124 ACG
1 ACG
106127 CCTCTACGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.11, C:0.56, G:0.07, T:0.27
Consensus pattern (21 bp):
ACGTCTCATCCCTCCCCCTCT
Left flanking sequence: Indices 105582 -- 106081
CACGAGACGCGGTAGTACCCACCACGGCCCCAAAACGTCAGTTCCCACTAAAAACGCCCGAGGCT
TCTCTACACACTGTGTACACCCAGTCTTTCCATCCCAAAACAACTATGACCGCCACACAACCACA
CCCTACTTCTCCCCTGCCTCCTTGCTCGCATTACTACCCGGTTAGTCAGCTCACGTGACCACCTG
GCAGGTCCACCCGACGGTGGCGTGCCGTTGCTGGCCACCATGCACTGTGCCCACGCCGGGCTATC
AGATCGATCGCGCCACCGTCGTCAGCCACCGCTGCCCGCAAACGACGATGACCCCCGCCAATACC
TTCCGTGTCTGGTAGCCTCCGCCAGCGATGCCTCACGTGTCGCGTCAGCTCACATTCCAACGGCC
TGGCGCTTCGACGCGTGTCTAGCGTGGTTAGTGCGTTCGCGGCCCGTTCGCTCGAGCGCCCGCTG
TTGCGTATCTCCTCTCGTCCACCACCATTCACTACCCCCATCTCC
Right flanking sequence: Indices 106127 -- 106626
CCTCTACGTCACTCGCTAACGCCCTGGGCCCGCCCGGCGTGCCAGGTTCCGTGCATACCCCTGCC
TAGCCGCTAACTAAATATAGATCGGTGCGTCTGGTCACAGTCTTGGTCACAGTTTTCGCCCAGCA
ACCGCCTGGCCCACCGCTCCTCCACCACCACCAACCAATTCTCGGTAGCCACCACGGACCCGCCA
TCGCCTCGGAAACCCCCACGGGGATCAGCGGACGCGCGCGGACACCCGCATGGGCCCGCAGGAGC
AAGCAGCAAGCCCCCGATGCCCCCACCACCGTCCCGGTAGCCACGGGTGGTGGTGGTGGCCTCCT
CCGTTTTCCTCCCATTTTCCTCTCATTTTCCTCTCATTTTCTCTCGCATTCTCTCTCGCATTCTC
TCCCCACTTTCGTTTTTCACCACCATACACACCAACAATAGCCCGAGGACACCGCTATCCCCGAG
CCCGACGGCCCAAACACGTAAAAAAAACCAGCGGACCCCACCACC
Found at i:106463 original size:10 final size:10
Alignment explanation
Indices: 106448--106492 Score: 54
Period size: 11 Copynumber: 4.2 Consensus size: 10
106438 GGTGGTGGCC
*
106448 TCCTCCGTTT
1 TCCTCCATTT
106458 TCCTCCCATTT
1 TCCT-CCATTT
106469 TCCTCTCATTT
1 TCCTC-CATTT
106480 TCCTCTCATTT
1 TCCTC-CATTT
106491 TC
1 TC
106493 TCTCGCATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 5 0.16
11 27 0.84
ACGTcount: A:0.07, C:0.40, G:0.02, T:0.51
Consensus pattern (10 bp):
TCCTCCATTT
Left flanking sequence: Indices 105948 -- 106447
GCGTCAGCTCACATTCCAACGGCCTGGCGCTTCGACGCGTGTCTAGCGTGGTTAGTGCGTTCGCG
GCCCGTTCGCTCGAGCGCCCGCTGTTGCGTATCTCCTCTCGTCCACCACCATTCACTACCCCCAT
CTCCACGTCTCATCCCTCCCCCTCTACGTCTCATCCCTCCCCCTCTACGCCTCTACGTCACTCGC
TAACGCCCTGGGCCCGCCCGGCGTGCCAGGTTCCGTGCATACCCCTGCCTAGCCGCTAACTAAAT
ATAGATCGGTGCGTCTGGTCACAGTCTTGGTCACAGTTTTCGCCCAGCAACCGCCTGGCCCACCG
CTCCTCCACCACCACCAACCAATTCTCGGTAGCCACCACGGACCCGCCATCGCCTCGGAAACCCC
CACGGGGATCAGCGGACGCGCGCGGACACCCGCATGGGCCCGCAGGAGCAAGCAGCAAGCCCCCG
ATGCCCCCACCACCGTCCCGGTAGCCACGGGTGGTGGTGGTGGCC
Right flanking sequence: Indices 106493 -- 106992
TCTCGCATTCTCTCTCGCATTCTCTCCCCACTTTCGTTTTTCACCACCATACACACCAACAATAG
CCCGAGGACACCGCTATCCCCGAGCCCGACGGCCCAAACACGTAAAAAAAACCAGCGGACCCCAC
CACCGCGGCCCCGTAGACCCCCCGTAGCCCCCCGTCTGGCCCGCTCGCCCGCCCGTCCGCGCGCA
GCCCGCACCCACCCGCTCGCGTTGCCTCACGCGCCTCATTTTTCGTTTGCATCCAGCAAGACACC
ACCACTGCTCCCGTCCACCAGGCCCCCCACGCACGCACGCACCACGCACACGAGCTAGCCATGAC
GGACAAGACCCCACGCGCGCCAGCGCTGCTGCTGCCGCCCGTGCCCATGCCCTCGCAGCTCCTGT
CGGACCTCCAGGCCCGGGTGATGGCCTTCCAGCAAAAACGGGCCCTGAAGGAGCCCCAGCTCCCA
CCGGGGCTGTTGCTGCGGCTGCTGCTGGCCAAGAGCACCCGCCCG
Found at i:106471 original size:11 final size:11
Alignment explanation
Indices: 106455--106496 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
106445 GCCTCCTCCG
*
106455 TTTTCCTCCCA
1 TTTTCCTCTCA
106466 TTTTCCTCTCA
1 TTTTCCTCTCA
106477 TTTTCCTCTCA
1 TTTTCCTCTCA
106488 TTTT-CTCTC
1 TTTTCCTCTC
106497 GCATTCTCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 5 0.17
11 25 0.83
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTCCTCTCA
Left flanking sequence: Indices 105955 -- 106454
CTCACATTCCAACGGCCTGGCGCTTCGACGCGTGTCTAGCGTGGTTAGTGCGTTCGCGGCCCGTT
CGCTCGAGCGCCCGCTGTTGCGTATCTCCTCTCGTCCACCACCATTCACTACCCCCATCTCCACG
TCTCATCCCTCCCCCTCTACGTCTCATCCCTCCCCCTCTACGCCTCTACGTCACTCGCTAACGCC
CTGGGCCCGCCCGGCGTGCCAGGTTCCGTGCATACCCCTGCCTAGCCGCTAACTAAATATAGATC
GGTGCGTCTGGTCACAGTCTTGGTCACAGTTTTCGCCCAGCAACCGCCTGGCCCACCGCTCCTCC
ACCACCACCAACCAATTCTCGGTAGCCACCACGGACCCGCCATCGCCTCGGAAACCCCCACGGGG
ATCAGCGGACGCGCGCGGACACCCGCATGGGCCCGCAGGAGCAAGCAGCAAGCCCCCGATGCCCC
CACCACCGTCCCGGTAGCCACGGGTGGTGGTGGTGGCCTCCTCCG
Right flanking sequence: Indices 106497 -- 106996
GCATTCTCTCTCGCATTCTCTCCCCACTTTCGTTTTTCACCACCATACACACCAACAATAGCCCG
AGGACACCGCTATCCCCGAGCCCGACGGCCCAAACACGTAAAAAAAACCAGCGGACCCCACCACC
GCGGCCCCGTAGACCCCCCGTAGCCCCCCGTCTGGCCCGCTCGCCCGCCCGTCCGCGCGCAGCCC
GCACCCACCCGCTCGCGTTGCCTCACGCGCCTCATTTTTCGTTTGCATCCAGCAAGACACCACCA
CTGCTCCCGTCCACCAGGCCCCCCACGCACGCACGCACCACGCACACGAGCTAGCCATGACGGAC
AAGACCCCACGCGCGCCAGCGCTGCTGCTGCCGCCCGTGCCCATGCCCTCGCAGCTCCTGTCGGA
CCTCCAGGCCCGGGTGATGGCCTTCCAGCAAAAACGGGCCCTGAAGGAGCCCCAGCTCCCACCGG
GGCTGTTGCTGCGGCTGCTGCTGGCCAAGAGCACCCGCCCGCTGC
Found at i:106506 original size:12 final size:12
Alignment explanation
Indices: 106486--106518 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
106476 ATTTTCCTCT
*
106486 CATTTTCTCTCG
1 CATTCTCTCTCG
106498 CATTCTCTCTCG
1 CATTCTCTCTCG
106510 CATTCTCTC
1 CATTCTCTC
106519 CCCACTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.06, T:0.45
Consensus pattern (12 bp):
CATTCTCTCTCG
Left flanking sequence: Indices 105986 -- 106485
GTGTCTAGCGTGGTTAGTGCGTTCGCGGCCCGTTCGCTCGAGCGCCCGCTGTTGCGTATCTCCTC
TCGTCCACCACCATTCACTACCCCCATCTCCACGTCTCATCCCTCCCCCTCTACGTCTCATCCCT
CCCCCTCTACGCCTCTACGTCACTCGCTAACGCCCTGGGCCCGCCCGGCGTGCCAGGTTCCGTGC
ATACCCCTGCCTAGCCGCTAACTAAATATAGATCGGTGCGTCTGGTCACAGTCTTGGTCACAGTT
TTCGCCCAGCAACCGCCTGGCCCACCGCTCCTCCACCACCACCAACCAATTCTCGGTAGCCACCA
CGGACCCGCCATCGCCTCGGAAACCCCCACGGGGATCAGCGGACGCGCGCGGACACCCGCATGGG
CCCGCAGGAGCAAGCAGCAAGCCCCCGATGCCCCCACCACCGTCCCGGTAGCCACGGGTGGTGGT
GGTGGCCTCCTCCGTTTTCCTCCCATTTTCCTCTCATTTTCCTCT
Right flanking sequence: Indices 106519 -- 107018
CCCACTTTCGTTTTTCACCACCATACACACCAACAATAGCCCGAGGACACCGCTATCCCCGAGCC
CGACGGCCCAAACACGTAAAAAAAACCAGCGGACCCCACCACCGCGGCCCCGTAGACCCCCCGTA
GCCCCCCGTCTGGCCCGCTCGCCCGCCCGTCCGCGCGCAGCCCGCACCCACCCGCTCGCGTTGCC
TCACGCGCCTCATTTTTCGTTTGCATCCAGCAAGACACCACCACTGCTCCCGTCCACCAGGCCCC
CCACGCACGCACGCACCACGCACACGAGCTAGCCATGACGGACAAGACCCCACGCGCGCCAGCGC
TGCTGCTGCCGCCCGTGCCCATGCCCTCGCAGCTCCTGTCGGACCTCCAGGCCCGGGTGATGGCC
TTCCAGCAAAAACGGGCCCTGAAGGAGCCCCAGCTCCCACCGGGGCTGTTGCTGCGGCTGCTGCT
GGCCAAGAGCACCCGCCCGCTGCTGCAGATTCTCCTGACCGCGTT
Found at i:108657 original size:12 final size:11
Alignment explanation
Indices: 108637--108714 Score: 54
Period size: 12 Copynumber: 7.0 Consensus size: 11
108627 CAGATGGGGT
*
108637 CACATACGAGG
1 CACAGACGAGG
108648 CCACAGACGAGG
1 -CACAGACGAGG
*
108660 -TCAGACGAGG
1 CACAGACGAGG
* *
108670 -TCAGATGAGG
1 CACAGACGAGG
108680 CCACAGACGAGG
1 -CACAGACGAGG
*
108692 TCAC-GACGAGAT
1 -CACAGACGAG-G
108704 CACAGACGAGG
1 CACAGACGAGG
108715 TGGAAGATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
10 18 0.33
11 9 0.17
12 27 0.50
ACGTcount: A:0.33, C:0.26, G:0.33, T:0.08
Consensus pattern (11 bp):
CACAGACGAGG
Left flanking sequence: Indices 108137 -- 108636
ACAACATTTTCTCGCAGCTCCTGGCGATCGTCAAGGGCGACCCTCCGATTTTGGCCGAGCGGTTT
TCGCCGGTTGCCCGCCAGTTTGTCGCGGGGTGCCTTGACAAGGCCGCGGACAAGCGCCCGTCGTA
CGGCGAGCTCTTGGAGCAGCAGTGGTTGCAGCAGTACCGCGGCCACCAGCACGAGTGCGAGTGCA
AGCTCGGGCAGGACGTGGTGTCGCGGTTGAAGGGCGACAAGCCGCCCACGCTGCCGAGAGACGCG
CCGCGGGGCGAGCTGGCGGCGCTGTTGCTCCGCAAGCAGTTCAAGCCCACGCCGAGACGGGTCCC
GCAGCCTCCGCCCAACCTTAATAAAGGCTTCCGCTAGCCTTGCAAGCCACACTGGTGGGTTATGC
TAGCCTGCCTGCTTAGAAGGACCCTCCCTATATACTACAATAAAACGTTCGATAGAGAATGACAC
GACGGTGGGAAGACCACAGACGAGGCCAGACGACTCAGATGGGGT
Right flanking sequence: Indices 108715 -- 109214
TGGAAGATTTTTTACAGATTGTTTACAGTGCTAAATTTATTAATAATTAAAACAACCTTGACTAC
GAATACCACTACATACCATTACACACCACTAAACACCACGAACTACCACTATAATCTCATCAACG
TGAAAACCCGCCAATCCCACACCCGGCCCATTCACCACCCACATGCTATCACCGCGATCGATCGC
CCGGCTAAACCTGACAAAAAACCGTTTTTTAACCCTATTTTCTGCGTGCAAGCAACCCCGGTTTG
TCGTCTAGCAGCCTTCCCTATTGTTTCCGTTTACGAGGCAGACCGGTGCAGCTCGGAGTGGGCCC
GCGGGTCAAGCCGCGACGACTCAAACGACGGCGACATGCTGGGAGCAGGTACAGCCTGCGCGGGT
TGCACGAGGGTGCTGAAGCTGCCCGACTTGCTTTTGGACGAGGCAAGGGTGGCGATGAACTGGTT
GAGCTGCACCAGCATTTTGTCCGCCCGGTCCGCCGCGGACAGACT
Found at i:108666 original size:10 final size:10
Alignment explanation
Indices: 108651--108715 Score: 58
Period size: 10 Copynumber: 6.0 Consensus size: 10
108641 TACGAGGCCA
108651 CAGACGAGGT
1 CAGACGAGGT
108661 CAGACGAGGT
1 CAGACGAGGT
* *
108671 CAGATGAGGCCA
1 CAGACGAGG--T
108683 CAGACGAGGT
1 CAGACGAGGT
*
108693 CACGACGAGAT
1 CA-GACGAGGT
108704 CACAGACGAGGT
1 --CAGACGAGGT
108716 GGAAGATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 20 0.45
11 7 0.16
12 15 0.34
13 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.35, T:0.09
Consensus pattern (10 bp):
CAGACGAGGT
Left flanking sequence: Indices 108151 -- 108650
CAGCTCCTGGCGATCGTCAAGGGCGACCCTCCGATTTTGGCCGAGCGGTTTTCGCCGGTTGCCCG
CCAGTTTGTCGCGGGGTGCCTTGACAAGGCCGCGGACAAGCGCCCGTCGTACGGCGAGCTCTTGG
AGCAGCAGTGGTTGCAGCAGTACCGCGGCCACCAGCACGAGTGCGAGTGCAAGCTCGGGCAGGAC
GTGGTGTCGCGGTTGAAGGGCGACAAGCCGCCCACGCTGCCGAGAGACGCGCCGCGGGGCGAGCT
GGCGGCGCTGTTGCTCCGCAAGCAGTTCAAGCCCACGCCGAGACGGGTCCCGCAGCCTCCGCCCA
ACCTTAATAAAGGCTTCCGCTAGCCTTGCAAGCCACACTGGTGGGTTATGCTAGCCTGCCTGCTT
AGAAGGACCCTCCCTATATACTACAATAAAACGTTCGATAGAGAATGACACGACGGTGGGAAGAC
CACAGACGAGGCCAGACGACTCAGATGGGGTCACATACGAGGCCA
Right flanking sequence: Indices 108716 -- 109215
GGAAGATTTTTTACAGATTGTTTACAGTGCTAAATTTATTAATAATTAAAACAACCTTGACTACG
AATACCACTACATACCATTACACACCACTAAACACCACGAACTACCACTATAATCTCATCAACGT
GAAAACCCGCCAATCCCACACCCGGCCCATTCACCACCCACATGCTATCACCGCGATCGATCGCC
CGGCTAAACCTGACAAAAAACCGTTTTTTAACCCTATTTTCTGCGTGCAAGCAACCCCGGTTTGT
CGTCTAGCAGCCTTCCCTATTGTTTCCGTTTACGAGGCAGACCGGTGCAGCTCGGAGTGGGCCCG
CGGGTCAAGCCGCGACGACTCAAACGACGGCGACATGCTGGGAGCAGGTACAGCCTGCGCGGGTT
GCACGAGGGTGCTGAAGCTGCCCGACTTGCTTTTGGACGAGGCAAGGGTGGCGATGAACTGGTTG
AGCTGCACCAGCATTTTGTCCGCCCGGTCCGCCGCGGACAGACTG
Found at i:108666 original size:43 final size:44
Alignment explanation
Indices: 108605--108701 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 44
108595 GGTGGGAAGA
* * *
108605 CCACAGACGAGGCCAGACGA-CTCAGATGGGGTCACATACGAGG
1 CCACAGACGAGGCCAGACGAGCTCAGATGAGGCCACAGACGAGG
* *
108648 CCACAGACGAGGTCAGACGAGGTCAGATGAGGCCACAGACGAGG
1 CCACAGACGAGGCCAGACGAGCTCAGATGAGGCCACAGACGAGG
*
108692 TCAC-GACGAG
1 CCACAGACGAG
108702 ATCACAGACG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 25 0.53
44 22 0.47
ACGTcount: A:0.31, C:0.27, G:0.34, T:0.08
Consensus pattern (44 bp):
CCACAGACGAGGCCAGACGAGCTCAGATGAGGCCACAGACGAGG
Left flanking sequence: Indices 108105 -- 108604
TGGCCACTACCCATACCCGCAGGAGACCTACAACAACATTTTCTCGCAGCTCCTGGCGATCGTCA
AGGGCGACCCTCCGATTTTGGCCGAGCGGTTTTCGCCGGTTGCCCGCCAGTTTGTCGCGGGGTGC
CTTGACAAGGCCGCGGACAAGCGCCCGTCGTACGGCGAGCTCTTGGAGCAGCAGTGGTTGCAGCA
GTACCGCGGCCACCAGCACGAGTGCGAGTGCAAGCTCGGGCAGGACGTGGTGTCGCGGTTGAAGG
GCGACAAGCCGCCCACGCTGCCGAGAGACGCGCCGCGGGGCGAGCTGGCGGCGCTGTTGCTCCGC
AAGCAGTTCAAGCCCACGCCGAGACGGGTCCCGCAGCCTCCGCCCAACCTTAATAAAGGCTTCCG
CTAGCCTTGCAAGCCACACTGGTGGGTTATGCTAGCCTGCCTGCTTAGAAGGACCCTCCCTATAT
ACTACAATAAAACGTTCGATAGAGAATGACACGACGGTGGGAAGA
Right flanking sequence: Indices 108702 -- 109201
ATCACAGACGAGGTGGAAGATTTTTTACAGATTGTTTACAGTGCTAAATTTATTAATAATTAAAA
CAACCTTGACTACGAATACCACTACATACCATTACACACCACTAAACACCACGAACTACCACTAT
AATCTCATCAACGTGAAAACCCGCCAATCCCACACCCGGCCCATTCACCACCCACATGCTATCAC
CGCGATCGATCGCCCGGCTAAACCTGACAAAAAACCGTTTTTTAACCCTATTTTCTGCGTGCAAG
CAACCCCGGTTTGTCGTCTAGCAGCCTTCCCTATTGTTTCCGTTTACGAGGCAGACCGGTGCAGC
TCGGAGTGGGCCCGCGGGTCAAGCCGCGACGACTCAAACGACGGCGACATGCTGGGAGCAGGTAC
AGCCTGCGCGGGTTGCACGAGGGTGCTGAAGCTGCCCGACTTGCTTTTGGACGAGGCAAGGGTGG
CGATGAACTGGTTGAGCTGCACCAGCATTTTGTCCGCCCGGTCCG
Found at i:108686 original size:22 final size:23
Alignment explanation
Indices: 108661--108715 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
108651 CAGACGAGGT
* *
108661 CAGACGAGGTCA-GATGAGGCCA
1 CAGACGAGGTCACGACGAGACCA
*
108683 CAGACGAGGTCACGACGAGATCA
1 CAGACGAGGTCACGACGAGACCA
108706 CAGACGAGGT
1 CAGACGAGGT
108716 GGAAGATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.33, C:0.24, G:0.35, T:0.09
Consensus pattern (23 bp):
CAGACGAGGTCACGACGAGACCA
Left flanking sequence: Indices 108161 -- 108660
CGATCGTCAAGGGCGACCCTCCGATTTTGGCCGAGCGGTTTTCGCCGGTTGCCCGCCAGTTTGTC
GCGGGGTGCCTTGACAAGGCCGCGGACAAGCGCCCGTCGTACGGCGAGCTCTTGGAGCAGCAGTG
GTTGCAGCAGTACCGCGGCCACCAGCACGAGTGCGAGTGCAAGCTCGGGCAGGACGTGGTGTCGC
GGTTGAAGGGCGACAAGCCGCCCACGCTGCCGAGAGACGCGCCGCGGGGCGAGCTGGCGGCGCTG
TTGCTCCGCAAGCAGTTCAAGCCCACGCCGAGACGGGTCCCGCAGCCTCCGCCCAACCTTAATAA
AGGCTTCCGCTAGCCTTGCAAGCCACACTGGTGGGTTATGCTAGCCTGCCTGCTTAGAAGGACCC
TCCCTATATACTACAATAAAACGTTCGATAGAGAATGACACGACGGTGGGAAGACCACAGACGAG
GCCAGACGACTCAGATGGGGTCACATACGAGGCCACAGACGAGGT
Right flanking sequence: Indices 108716 -- 109215
GGAAGATTTTTTACAGATTGTTTACAGTGCTAAATTTATTAATAATTAAAACAACCTTGACTACG
AATACCACTACATACCATTACACACCACTAAACACCACGAACTACCACTATAATCTCATCAACGT
GAAAACCCGCCAATCCCACACCCGGCCCATTCACCACCCACATGCTATCACCGCGATCGATCGCC
CGGCTAAACCTGACAAAAAACCGTTTTTTAACCCTATTTTCTGCGTGCAAGCAACCCCGGTTTGT
CGTCTAGCAGCCTTCCCTATTGTTTCCGTTTACGAGGCAGACCGGTGCAGCTCGGAGTGGGCCCG
CGGGTCAAGCCGCGACGACTCAAACGACGGCGACATGCTGGGAGCAGGTACAGCCTGCGCGGGTT
GCACGAGGGTGCTGAAGCTGCCCGACTTGCTTTTGGACGAGGCAAGGGTGGCGATGAACTGGTTG
AGCTGCACCAGCATTTTGTCCGCCCGGTCCGCCGCGGACAGACTG
Found at i:115146 original size:15 final size:15
Alignment explanation
Indices: 115111--115164 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
115101 CAACCACCTT
115111 CTTTGCTATAGCCACC
1 CTTTGCTATAGCCA-C
*
115127 CTTTGATATAGCCAC
1 CTTTGCTATAGCCAC
*
115142 CTTTGCTAAAGCCAC
1 CTTTGCTATAGCCAC
115157 CTTTGCTA
1 CTTTGCTA
115165 ACCTCCTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
15 22 0.63
16 13 0.37
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.33
Consensus pattern (15 bp):
CTTTGCTATAGCCAC
Left flanking sequence: Indices 114611 -- 115110
GTCTGATAAGCCTGGAGGAATTTGTGGCATGGTGTTGAAGTTCGGTCGGGAGTGATCATACCGAG
ATAAGTTTGGTGATATGCGATTTGATGTTTGTCCCAAGGGATTATAGCAACTTCCATGTAGGAGT
GTAGCCAGGCACTGATAGGCATAAAACCACACAATCCAAACCAGAACCATCAATCTCAGATCACT
CCAAAAGCTTGGTTCTCCCCCTCTTCGCAAACTACAGCAATTTCTCCGTGGAAGGCTCCAATTCG
AAAATGGAAGCAAGGCACACTCAGTTGACGTTTTGATCAGGTTAGCGAAGATGTCCAACCCGCTT
AAATCATTTAAAGTCCCAGAAACCACAATGTTCTCGCGATGGGAGTGTTCTCTTTGCTCACCCCC
TAATCCATGTATGGTGTCCCAAATAGGCAGGTTGTAGCACAAGAGAAAAACACCAAGACGAGACT
ATTTGAGTTACCGAGACAGGTTTCCGAGCCCACAACAACCACCTT
Right flanking sequence: Indices 115165 -- 115664
ACCTCCTTTCTACATCACTATCCTACCTTCTCACTGTATCCCATAACCGTATATACCTAGTAATG
CCTACTCTGCCATCGCCTCGACCGCAGCGCGCTCCTCTTCCTCCTTGTGGGTCTTCAAGTGCTGG
TTGAGATTGTCCTGGCGGGAAAACTTTTTGTTGCAAATGGTGCAGTCGTAGGGCTTCTCAAACGT
GTGGAGCGACCGGAAGTGGCGCTTCAAGTGCTCCTGGCGCTTGAACCGCCGCAGGCAGTAGTTGC
ACAAGTAGATCTTCAGCAGGTCCACCATGTCGGCCTCCTTGTTCTCCTTGCGTCCGCGGGTGCGG
TTCTTTTGGTTGATGATGCTGGTGGGGAAGATCTGGGTGTTGGGGGGCAAGTCGAGCGTGCTCAA
ATCCACCTCGACTTCGACGCCCTTGGAGATGACGGTGGCCACGGGCTTGCCGTTGGCGGTGGGCG
CCACCGAGATGCCCCCGTGCGACGACGCCAGCGAGGCCGAGCTCT
Found at i:117711 original size:12 final size:12
Alignment explanation
Indices: 117694--117745 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
117684 CAATGGTGTG
117694 AAATAGTGAGTA
1 AAATAGTGAGTA
117706 AAATA--GAGT-
1 AAATAGTGAGTA
117715 -AATAGT--GTA
1 AAATAGTGAGTA
*
117724 CAATAGTGAGTA
1 AAATAGTGAGTA
117736 AAATAGTGAG
1 AAATAGTGAG
117746 AGTAAAATGA
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
8 6 0.18
10 10 0.30
12 17 0.52
ACGTcount: A:0.48, C:0.02, G:0.25, T:0.25
Consensus pattern (12 bp):
AAATAGTGAGTA
Left flanking sequence: Indices 117194 -- 117693
CCGTCGTTGGGGGCGGTGTTTTCGGGAAAACCGTAGTTCTGCGGCGGTCGTCCGCGTTTCTGGGG
GGTGTCGGTGGTGTTTAGAAGCCACCCGAGGTCCTCGTCGTGGTTCATGGCTCCGGAAGGCGCAG
GGTCGCCACGGGTTTTGTACGTATGCGGGGTCTGCGGCGCAGAGGGCAGTCACAGATCGGTAGTG
GCGGGTTCGCAGCACCGTTGCGAGTGGGCAGATGCTCTGTGCTAGCGCGGGGACGGGTGTGGTGG
GGCAGGCTGGTGGCTCGAGTGCCCGGGCGATGGTGAGCAAATGCGATTGTTCGGTGCGAATCAGT
CACGGAGAGGGGAGGGGGCTGAGGCAAAGACGAGCTGGGGCTACGGGCGGGCTGGCGGGCTGGTG
GCGGGCTTACGGGGTTGCTACGGGTGTGGGGAGTGGCGCTGGGTGGTTTTTGGGCGTGGTTGGTG
GCGTGGCGGGCGCGGTGGGCTGTTGTTGCCTGCGTCAATGGTGTG
Right flanking sequence: Indices 117746 -- 118245
AGTAAAATGAGTAAAAATAGTGATAATAGATACGTGGGAGAAGTAGGAAGGAAGTAGGAAGGAAG
TAGGAAGAAAGGAGGAAGGAAGGCAAGAAAAGAAGAAGGAAGAAGGAAGAAAGAGAAATCAGGGG
CAGGAGTAGATCGCGACGCACGCACGCGCCACCCTCGACCGACCGCTGGACGCTTCCAGCCCGCA
CCATTGTGATCGACGGCTACCCCGGATTCCTGCGAGCAACCGAGCACACCGTTACGAGCCGAGAC
GAGCGAGCAAATTCGCTGGTGGCGGCCGTAGGGGAGCTTCCGACGCGGGGCTTAGCACTAGCCGA
CAGACACCGGATTAATGCCCGGGTCCCACGCGGTCGTGGGCTCGGTTGTGTGCTCGGTTGCGGTC
GTGGCCTACTGTCGTGTGGACACGCCACTGCCCACACTACACACACCAGCGTAGCCCAGCGTGTT
TCCCCGCTTTCGTGGCCTGTTGTCGCGGCTCGGGCCTGCCTCAAC
Found at i:117799 original size:4 final size:4
Alignment explanation
Indices: 117790--117859 Score: 51
Period size: 4 Copynumber: 18.5 Consensus size: 4
117780 TGGGAGAAGT
* * *
117790 AGGA AGGA A-GT AGGA AGGA A-GT AGGA AGAA AGG- AGGA AGGA AGGCA
1 AGGA AGGA AGGA AGGA AGGA AGGA AGGA AGGA AGGA AGGA AGGA AGG-A
* *
117836 AGAA AAGA A-GA AGGA A-GA AGGA AG
1 AGGA AGGA AGGA AGGA AGGA AGGA AG
117860 AAAGAGAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
3 13 0.25
4 35 0.69
5 3 0.06
ACGTcount: A:0.53, C:0.01, G:0.43, T:0.03
Consensus pattern (4 bp):
AGGA
Left flanking sequence: Indices 117290 -- 117789
TCCTCGTCGTGGTTCATGGCTCCGGAAGGCGCAGGGTCGCCACGGGTTTTGTACGTATGCGGGGT
CTGCGGCGCAGAGGGCAGTCACAGATCGGTAGTGGCGGGTTCGCAGCACCGTTGCGAGTGGGCAG
ATGCTCTGTGCTAGCGCGGGGACGGGTGTGGTGGGGCAGGCTGGTGGCTCGAGTGCCCGGGCGAT
GGTGAGCAAATGCGATTGTTCGGTGCGAATCAGTCACGGAGAGGGGAGGGGGCTGAGGCAAAGAC
GAGCTGGGGCTACGGGCGGGCTGGCGGGCTGGTGGCGGGCTTACGGGGTTGCTACGGGTGTGGGG
AGTGGCGCTGGGTGGTTTTTGGGCGTGGTTGGTGGCGTGGCGGGCGCGGTGGGCTGTTGTTGCCT
GCGTCAATGGTGTGAAATAGTGAGTAAAATAGAGTAATAGTGTACAATAGTGAGTAAAATAGTGA
GAGTAAAATGAGTAAAAATAGTGATAATAGATACGTGGGAGAAGT
Right flanking sequence: Indices 117860 -- 118359
AAAGAGAAATCAGGGGCAGGAGTAGATCGCGACGCACGCACGCGCCACCCTCGACCGACCGCTGG
ACGCTTCCAGCCCGCACCATTGTGATCGACGGCTACCCCGGATTCCTGCGAGCAACCGAGCACAC
CGTTACGAGCCGAGACGAGCGAGCAAATTCGCTGGTGGCGGCCGTAGGGGAGCTTCCGACGCGGG
GCTTAGCACTAGCCGACAGACACCGGATTAATGCCCGGGTCCCACGCGGTCGTGGGCTCGGTTGT
GTGCTCGGTTGCGGTCGTGGCCTACTGTCGTGTGGACACGCCACTGCCCACACTACACACACCAG
CGTAGCCCAGCGTGTTTCCCCGCTTTCGTGGCCTGTTGTCGCGGCTCGGGCCTGCCTCAACCCCA
GATCGTGCCAACTGCCGCTTCCGGGCCGGCAGGTCCATCCGGGGGATCCTCGAGATAGCCGTGCC
GGGTGGGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTA
Found at i:117813 original size:22 final size:22
Alignment explanation
Indices: 117785--117863 Score: 90
Period size: 22 Copynumber: 3.7 Consensus size: 22
117775 ATACGTGGGA
* *
117785 GAAGTAGGAAGGAAGTAGGAAG
1 GAAGTAGGAAGAAAGGAGGAAG
117807 GAAGTAGGAAGAAAGGAGGAAG
1 GAAGTAGGAAGAAAGGAGGAAG
* * *
117829 GAAG--GCAAGAAAAGAAGAAG
1 GAAGTAGGAAGAAAGGAGGAAG
*
117849 GAAGAAGGAAGAAAG
1 GAAGTAGGAAGAAAG
117864 AGAAATCAGG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 17 0.35
22 31 0.65
ACGTcount: A:0.53, C:0.01, G:0.42, T:0.04
Consensus pattern (22 bp):
GAAGTAGGAAGAAAGGAGGAAG
Left flanking sequence: Indices 117285 -- 117784
CGAGGTCCTCGTCGTGGTTCATGGCTCCGGAAGGCGCAGGGTCGCCACGGGTTTTGTACGTATGC
GGGGTCTGCGGCGCAGAGGGCAGTCACAGATCGGTAGTGGCGGGTTCGCAGCACCGTTGCGAGTG
GGCAGATGCTCTGTGCTAGCGCGGGGACGGGTGTGGTGGGGCAGGCTGGTGGCTCGAGTGCCCGG
GCGATGGTGAGCAAATGCGATTGTTCGGTGCGAATCAGTCACGGAGAGGGGAGGGGGCTGAGGCA
AAGACGAGCTGGGGCTACGGGCGGGCTGGCGGGCTGGTGGCGGGCTTACGGGGTTGCTACGGGTG
TGGGGAGTGGCGCTGGGTGGTTTTTGGGCGTGGTTGGTGGCGTGGCGGGCGCGGTGGGCTGTTGT
TGCCTGCGTCAATGGTGTGAAATAGTGAGTAAAATAGAGTAATAGTGTACAATAGTGAGTAAAAT
AGTGAGAGTAAAATGAGTAAAAATAGTGATAATAGATACGTGGGA
Right flanking sequence: Indices 117864 -- 118363
AGAAATCAGGGGCAGGAGTAGATCGCGACGCACGCACGCGCCACCCTCGACCGACCGCTGGACGC
TTCCAGCCCGCACCATTGTGATCGACGGCTACCCCGGATTCCTGCGAGCAACCGAGCACACCGTT
ACGAGCCGAGACGAGCGAGCAAATTCGCTGGTGGCGGCCGTAGGGGAGCTTCCGACGCGGGGCTT
AGCACTAGCCGACAGACACCGGATTAATGCCCGGGTCCCACGCGGTCGTGGGCTCGGTTGTGTGC
TCGGTTGCGGTCGTGGCCTACTGTCGTGTGGACACGCCACTGCCCACACTACACACACCAGCGTA
GCCCAGCGTGTTTCCCCGCTTTCGTGGCCTGTTGTCGCGGCTCGGGCCTGCCTCAACCCCAGATC
GTGCCAACTGCCGCTTCCGGGCCGGCAGGTCCATCCGGGGGATCCTCGAGATAGCCGTGCCGGGT
GGGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTAGCAG
Found at i:117833 original size:11 final size:11
Alignment explanation
Indices: 117785--117832 Score: 78
Period size: 11 Copynumber: 4.4 Consensus size: 11
117775 ATACGTGGGA
117785 GAAGTAGGAAG
1 GAAGTAGGAAG
117796 GAAGTAGGAAG
1 GAAGTAGGAAG
117807 GAAGTAGGAAG
1 GAAGTAGGAAG
* *
117818 AAAGGAGGAAG
1 GAAGTAGGAAG
117829 GAAG
1 GAAG
117833 GCAAGAAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.48, C:0.00, G:0.46, T:0.06
Consensus pattern (11 bp):
GAAGTAGGAAG
Left flanking sequence: Indices 117285 -- 117784
CGAGGTCCTCGTCGTGGTTCATGGCTCCGGAAGGCGCAGGGTCGCCACGGGTTTTGTACGTATGC
GGGGTCTGCGGCGCAGAGGGCAGTCACAGATCGGTAGTGGCGGGTTCGCAGCACCGTTGCGAGTG
GGCAGATGCTCTGTGCTAGCGCGGGGACGGGTGTGGTGGGGCAGGCTGGTGGCTCGAGTGCCCGG
GCGATGGTGAGCAAATGCGATTGTTCGGTGCGAATCAGTCACGGAGAGGGGAGGGGGCTGAGGCA
AAGACGAGCTGGGGCTACGGGCGGGCTGGCGGGCTGGTGGCGGGCTTACGGGGTTGCTACGGGTG
TGGGGAGTGGCGCTGGGTGGTTTTTGGGCGTGGTTGGTGGCGTGGCGGGCGCGGTGGGCTGTTGT
TGCCTGCGTCAATGGTGTGAAATAGTGAGTAAAATAGAGTAATAGTGTACAATAGTGAGTAAAAT
AGTGAGAGTAAAATGAGTAAAAATAGTGATAATAGATACGTGGGA
Right flanking sequence: Indices 117833 -- 118332
GCAAGAAAAGAAGAAGGAAGAAGGAAGAAAGAGAAATCAGGGGCAGGAGTAGATCGCGACGCACG
CACGCGCCACCCTCGACCGACCGCTGGACGCTTCCAGCCCGCACCATTGTGATCGACGGCTACCC
CGGATTCCTGCGAGCAACCGAGCACACCGTTACGAGCCGAGACGAGCGAGCAAATTCGCTGGTGG
CGGCCGTAGGGGAGCTTCCGACGCGGGGCTTAGCACTAGCCGACAGACACCGGATTAATGCCCGG
GTCCCACGCGGTCGTGGGCTCGGTTGTGTGCTCGGTTGCGGTCGTGGCCTACTGTCGTGTGGACA
CGCCACTGCCCACACTACACACACCAGCGTAGCCCAGCGTGTTTCCCCGCTTTCGTGGCCTGTTG
TCGCGGCTCGGGCCTGCCTCAACCCCAGATCGTGCCAACTGCCGCTTCCGGGCCGGCAGGTCCAT
CCGGGGGATCCTCGAGATAGCCGTGCCGGGTGGGTGTGGAAACGA
Found at i:117840 original size:20 final size:21
Alignment explanation
Indices: 117801--117862 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
117791 GGAAGGAAGT
* *
117801 AGGAAGGAAGTAGGAAGAAAGG
1 AGGAAGGAAG-AGCAAGAAAAG
117823 AGGAAGGAAG-GCAAGAAAAG
1 AGGAAGGAAGAGCAAGAAAAG
* *
117843 AAGAAGGAAGAAGGAAGAAA
1 AGGAAGGAAG-AGCAAGAAA
117863 GAGAAATCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
20 17 0.50
22 17 0.50
ACGTcount: A:0.56, C:0.02, G:0.40, T:0.02
Consensus pattern (21 bp):
AGGAAGGAAGAGCAAGAAAAG
Left flanking sequence: Indices 117301 -- 117800
GTTCATGGCTCCGGAAGGCGCAGGGTCGCCACGGGTTTTGTACGTATGCGGGGTCTGCGGCGCAG
AGGGCAGTCACAGATCGGTAGTGGCGGGTTCGCAGCACCGTTGCGAGTGGGCAGATGCTCTGTGC
TAGCGCGGGGACGGGTGTGGTGGGGCAGGCTGGTGGCTCGAGTGCCCGGGCGATGGTGAGCAAAT
GCGATTGTTCGGTGCGAATCAGTCACGGAGAGGGGAGGGGGCTGAGGCAAAGACGAGCTGGGGCT
ACGGGCGGGCTGGCGGGCTGGTGGCGGGCTTACGGGGTTGCTACGGGTGTGGGGAGTGGCGCTGG
GTGGTTTTTGGGCGTGGTTGGTGGCGTGGCGGGCGCGGTGGGCTGTTGTTGCCTGCGTCAATGGT
GTGAAATAGTGAGTAAAATAGAGTAATAGTGTACAATAGTGAGTAAAATAGTGAGAGTAAAATGA
GTAAAAATAGTGATAATAGATACGTGGGAGAAGTAGGAAGGAAGT
Right flanking sequence: Indices 117863 -- 118362
GAGAAATCAGGGGCAGGAGTAGATCGCGACGCACGCACGCGCCACCCTCGACCGACCGCTGGACG
CTTCCAGCCCGCACCATTGTGATCGACGGCTACCCCGGATTCCTGCGAGCAACCGAGCACACCGT
TACGAGCCGAGACGAGCGAGCAAATTCGCTGGTGGCGGCCGTAGGGGAGCTTCCGACGCGGGGCT
TAGCACTAGCCGACAGACACCGGATTAATGCCCGGGTCCCACGCGGTCGTGGGCTCGGTTGTGTG
CTCGGTTGCGGTCGTGGCCTACTGTCGTGTGGACACGCCACTGCCCACACTACACACACCAGCGT
AGCCCAGCGTGTTTCCCCGCTTTCGTGGCCTGTTGTCGCGGCTCGGGCCTGCCTCAACCCCAGAT
CGTGCCAACTGCCGCTTCCGGGCCGGCAGGTCCATCCGGGGGATCCTCGAGATAGCCGTGCCGGG
TGGGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTAGCA
Found at i:117854 original size:7 final size:7
Alignment explanation
Indices: 117803--117861 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
117793 AAGGAAGTAG
117803 GAAGGAA
1 GAAGGAA
*
117810 GTAGGAA
1 GAAGGAA
*
117817 GAAAGGAG
1 G-AAGGAA
117825 GAAGGAA
1 GAAGGAA
117832 GGCAA-GAA
1 -G-AAGGAA
117840 -AA-GAA
1 GAAGGAA
117845 GAAGGAA
1 GAAGGAA
117852 GAAGGAA
1 GAAGGAA
117859 GAA
1 GAA
117862 AGAGAAATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 5 0.12
6 2 0.05
7 25 0.58
8 9 0.21
9 2 0.05
ACGTcount: A:0.56, C:0.02, G:0.41, T:0.02
Consensus pattern (7 bp):
GAAGGAA
Left flanking sequence: Indices 117303 -- 117802
TCATGGCTCCGGAAGGCGCAGGGTCGCCACGGGTTTTGTACGTATGCGGGGTCTGCGGCGCAGAG
GGCAGTCACAGATCGGTAGTGGCGGGTTCGCAGCACCGTTGCGAGTGGGCAGATGCTCTGTGCTA
GCGCGGGGACGGGTGTGGTGGGGCAGGCTGGTGGCTCGAGTGCCCGGGCGATGGTGAGCAAATGC
GATTGTTCGGTGCGAATCAGTCACGGAGAGGGGAGGGGGCTGAGGCAAAGACGAGCTGGGGCTAC
GGGCGGGCTGGCGGGCTGGTGGCGGGCTTACGGGGTTGCTACGGGTGTGGGGAGTGGCGCTGGGT
GGTTTTTGGGCGTGGTTGGTGGCGTGGCGGGCGCGGTGGGCTGTTGTTGCCTGCGTCAATGGTGT
GAAATAGTGAGTAAAATAGAGTAATAGTGTACAATAGTGAGTAAAATAGTGAGAGTAAAATGAGT
AAAAATAGTGATAATAGATACGTGGGAGAAGTAGGAAGGAAGTAG
Right flanking sequence: Indices 117862 -- 118361
AGAGAAATCAGGGGCAGGAGTAGATCGCGACGCACGCACGCGCCACCCTCGACCGACCGCTGGAC
GCTTCCAGCCCGCACCATTGTGATCGACGGCTACCCCGGATTCCTGCGAGCAACCGAGCACACCG
TTACGAGCCGAGACGAGCGAGCAAATTCGCTGGTGGCGGCCGTAGGGGAGCTTCCGACGCGGGGC
TTAGCACTAGCCGACAGACACCGGATTAATGCCCGGGTCCCACGCGGTCGTGGGCTCGGTTGTGT
GCTCGGTTGCGGTCGTGGCCTACTGTCGTGTGGACACGCCACTGCCCACACTACACACACCAGCG
TAGCCCAGCGTGTTTCCCCGCTTTCGTGGCCTGTTGTCGCGGCTCGGGCCTGCCTCAACCCCAGA
TCGTGCCAACTGCCGCTTCCGGGCCGGCAGGTCCATCCGGGGGATCCTCGAGATAGCCGTGCCGG
GTGGGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTAGC
Found at i:117864 original size:11 final size:11
Alignment explanation
Indices: 117790--117864 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 11
117780 TGGGAGAAGT
* *
117790 AGGAAGGAAGT
1 AGGAAGAAAGA
* *
117801 AGGAAGGAAGT
1 AGGAAGAAAGA
*
117812 AGGAAGAAAGG
1 AGGAAGAAAGA
117823 AGGAAG---GA
1 AGGAAGAAAGA
117831 AGGCAAGAAAAGA
1 AGG-AAG-AAAGA
*
117844 A-GAAGGAAGA
1 AGGAAGAAAGA
117854 AGGAAGAAAGA
1 AGGAAGAAAGA
117865 GAAATCAGGG
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 5 0.09
11 37 0.70
12 1 0.02
13 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.41, T:0.03
Consensus pattern (11 bp):
AGGAAGAAAGA
Left flanking sequence: Indices 117290 -- 117789
TCCTCGTCGTGGTTCATGGCTCCGGAAGGCGCAGGGTCGCCACGGGTTTTGTACGTATGCGGGGT
CTGCGGCGCAGAGGGCAGTCACAGATCGGTAGTGGCGGGTTCGCAGCACCGTTGCGAGTGGGCAG
ATGCTCTGTGCTAGCGCGGGGACGGGTGTGGTGGGGCAGGCTGGTGGCTCGAGTGCCCGGGCGAT
GGTGAGCAAATGCGATTGTTCGGTGCGAATCAGTCACGGAGAGGGGAGGGGGCTGAGGCAAAGAC
GAGCTGGGGCTACGGGCGGGCTGGCGGGCTGGTGGCGGGCTTACGGGGTTGCTACGGGTGTGGGG
AGTGGCGCTGGGTGGTTTTTGGGCGTGGTTGGTGGCGTGGCGGGCGCGGTGGGCTGTTGTTGCCT
GCGTCAATGGTGTGAAATAGTGAGTAAAATAGAGTAATAGTGTACAATAGTGAGTAAAATAGTGA
GAGTAAAATGAGTAAAAATAGTGATAATAGATACGTGGGAGAAGT
Right flanking sequence: Indices 117865 -- 118364
GAAATCAGGGGCAGGAGTAGATCGCGACGCACGCACGCGCCACCCTCGACCGACCGCTGGACGCT
TCCAGCCCGCACCATTGTGATCGACGGCTACCCCGGATTCCTGCGAGCAACCGAGCACACCGTTA
CGAGCCGAGACGAGCGAGCAAATTCGCTGGTGGCGGCCGTAGGGGAGCTTCCGACGCGGGGCTTA
GCACTAGCCGACAGACACCGGATTAATGCCCGGGTCCCACGCGGTCGTGGGCTCGGTTGTGTGCT
CGGTTGCGGTCGTGGCCTACTGTCGTGTGGACACGCCACTGCCCACACTACACACACCAGCGTAG
CCCAGCGTGTTTCCCCGCTTTCGTGGCCTGTTGTCGCGGCTCGGGCCTGCCTCAACCCCAGATCG
TGCCAACTGCCGCTTCCGGGCCGGCAGGTCCATCCGGGGGATCCTCGAGATAGCCGTGCCGGGTG
GGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTAGCAGG
Found at i:118821 original size:11 final size:11
Alignment explanation
Indices: 118800--118857 Score: 75
Period size: 11 Copynumber: 5.4 Consensus size: 11
118790 AGCCTACTAA
118800 TTACC-TTTCT
1 TTACCTTTTCT
118810 TTACCTTTTC-
1 TTACCTTTTCT
118820 TTACCTTTTCT
1 TTACCTTTTCT
*
118831 TTATCTTTTCT
1 TTACCTTTTCT
*
118842 TTACCGTCTTCT
1 TTACC-TTTTCT
118854 TTAC
1 TTAC
118858 GAGTAGCCAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
10 15 0.36
11 18 0.43
12 9 0.21
ACGTcount: A:0.10, C:0.28, G:0.02, T:0.60
Consensus pattern (11 bp):
TTACCTTTTCT
Left flanking sequence: Indices 118300 -- 118799
CGAGATAGCCGTGCCGGGTGGGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTAGCAGG
CTCTACAGAGTGGCCGTGGGGTGGTGGGCGAGGCGTGCCCGCGCTGGCCGTGTCCGACGCAGACT
GTGCCCGGGTGGATCTGGCAACCGTTTGGACCGGTTAGTCAGCTCGGGCGAACGCGGAGAGACGG
TGGAGAGACACGGTGGGGCATGGGTGAAACAGGGTGGTGGCAGTCTACGTGGGGTGGTGGTTACG
GTGGGTAGGATGGTCGGTGGGACCGTCGGTGGGGCGCCAGGGTCTACACGGTGGCTGCTGCGGGC
ACTGTCTGCCGTCTCGCTCGGTATCTATGCGTACCACCGCCCGATAGCTGCATCGAAGAATTAGC
GCAACCGGGCTATGTGGTTGCGCTAATAATAGGTGGTGGTGGTGGGTATGTGCCTGTGGGGTTAC
CCGAGCTGGTGGCGTGGTGGGCCATCTCTCGGTTGAGCCTACTAA
Right flanking sequence: Indices 118858 -- 119357
GAGTAGCCAGCTTCGTAGACGTTTGCCCGGTCTAATGCCATCGCCAGCGGGCTAACATTGCTACG
GCTGCTAAAGTCTGGCTAACGTCTGGCTAACGTCTCGTATTGCTGTCGAGGGACCGTTGTGTCAG
GGCTCGGTTCCGGTGGTTGCGAGATTGGCGAGCCGGACGATGCGTGGGAGGTGTGTGTAGCCTCG
TCCGCACGTGCTGGTGTCGCCCGAGTCTTGGCTGACGGCCTCGTGTTCTGGATGGTTGCAGGACA
ATGGCCACTTCCGTCTGCGTGAACAATGCAGCCAATTGGGGCAAACAAACGTGTGGGGTGTGTGG
GGTGGTTGCGAGCTAGTCCCGCGTGACCATTACTGAGTGGTTTGTAGTCGCTGGCCTCCAGCGTG
GCCTCTACGTTGGGACACACTGTGTCTGATCACCGTGTCCTGCACATAGTCAAAGCCACCACCAC
CCTTGGTGACAATATTTCCTAGTCAATATTCAGTCACTACCCATA
Found at i:118831 original size:21 final size:22
Alignment explanation
Indices: 118800--118857 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
118790 AGCCTACTAA
118800 TTACC-TTTCTTTACCTTTTC-
1 TTACCTTTTCTTTACCTTTTCT
*
118820 TTACCTTTTCTTTATCTTTTCT
1 TTACCTTTTCTTTACCTTTTCT
*
118842 TTACCGTCTTCTTTAC
1 TTACC-TTTTCTTTAC
118858 GAGTAGCCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.16
21 14 0.44
22 5 0.16
23 8 0.25
ACGTcount: A:0.10, C:0.28, G:0.02, T:0.60
Consensus pattern (22 bp):
TTACCTTTTCTTTACCTTTTCT
Left flanking sequence: Indices 118300 -- 118799
CGAGATAGCCGTGCCGGGTGGGTGTGGAAACGAGGGAGAAACGAGCGCACGCGACCGCTAGCAGG
CTCTACAGAGTGGCCGTGGGGTGGTGGGCGAGGCGTGCCCGCGCTGGCCGTGTCCGACGCAGACT
GTGCCCGGGTGGATCTGGCAACCGTTTGGACCGGTTAGTCAGCTCGGGCGAACGCGGAGAGACGG
TGGAGAGACACGGTGGGGCATGGGTGAAACAGGGTGGTGGCAGTCTACGTGGGGTGGTGGTTACG
GTGGGTAGGATGGTCGGTGGGACCGTCGGTGGGGCGCCAGGGTCTACACGGTGGCTGCTGCGGGC
ACTGTCTGCCGTCTCGCTCGGTATCTATGCGTACCACCGCCCGATAGCTGCATCGAAGAATTAGC
GCAACCGGGCTATGTGGTTGCGCTAATAATAGGTGGTGGTGGTGGGTATGTGCCTGTGGGGTTAC
CCGAGCTGGTGGCGTGGTGGGCCATCTCTCGGTTGAGCCTACTAA
Right flanking sequence: Indices 118858 -- 119357
GAGTAGCCAGCTTCGTAGACGTTTGCCCGGTCTAATGCCATCGCCAGCGGGCTAACATTGCTACG
GCTGCTAAAGTCTGGCTAACGTCTGGCTAACGTCTCGTATTGCTGTCGAGGGACCGTTGTGTCAG
GGCTCGGTTCCGGTGGTTGCGAGATTGGCGAGCCGGACGATGCGTGGGAGGTGTGTGTAGCCTCG
TCCGCACGTGCTGGTGTCGCCCGAGTCTTGGCTGACGGCCTCGTGTTCTGGATGGTTGCAGGACA
ATGGCCACTTCCGTCTGCGTGAACAATGCAGCCAATTGGGGCAAACAAACGTGTGGGGTGTGTGG
GGTGGTTGCGAGCTAGTCCCGCGTGACCATTACTGAGTGGTTTGTAGTCGCTGGCCTCCAGCGTG
GCCTCTACGTTGGGACACACTGTGTCTGATCACCGTGTCCTGCACATAGTCAAAGCCACCACCAC
CCTTGGTGACAATATTTCCTAGTCAATATTCAGTCACTACCCATA
Found at i:118946 original size:11 final size:11
Alignment explanation
Indices: 118926--118957 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
118916 TGCTACGGCT
*
118926 GCTAAAGTCTG
1 GCTAACGTCTG
118937 GCTAACGTCTG
1 GCTAACGTCTG
118948 GCTAACGTCT
1 GCTAACGTCT
118958 CGTATTGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (11 bp):
GCTAACGTCTG
Left flanking sequence: Indices 118426 -- 118925
GACTGTGCCCGGGTGGATCTGGCAACCGTTTGGACCGGTTAGTCAGCTCGGGCGAACGCGGAGAG
ACGGTGGAGAGACACGGTGGGGCATGGGTGAAACAGGGTGGTGGCAGTCTACGTGGGGTGGTGGT
TACGGTGGGTAGGATGGTCGGTGGGACCGTCGGTGGGGCGCCAGGGTCTACACGGTGGCTGCTGC
GGGCACTGTCTGCCGTCTCGCTCGGTATCTATGCGTACCACCGCCCGATAGCTGCATCGAAGAAT
TAGCGCAACCGGGCTATGTGGTTGCGCTAATAATAGGTGGTGGTGGTGGGTATGTGCCTGTGGGG
TTACCCGAGCTGGTGGCGTGGTGGGCCATCTCTCGGTTGAGCCTACTAATTACCTTTCTTTACCT
TTTCTTACCTTTTCTTTATCTTTTCTTTACCGTCTTCTTTACGAGTAGCCAGCTTCGTAGACGTT
TGCCCGGTCTAATGCCATCGCCAGCGGGCTAACATTGCTACGGCT
Right flanking sequence: Indices 118958 -- 119457
CGTATTGCTGTCGAGGGACCGTTGTGTCAGGGCTCGGTTCCGGTGGTTGCGAGATTGGCGAGCCG
GACGATGCGTGGGAGGTGTGTGTAGCCTCGTCCGCACGTGCTGGTGTCGCCCGAGTCTTGGCTGA
CGGCCTCGTGTTCTGGATGGTTGCAGGACAATGGCCACTTCCGTCTGCGTGAACAATGCAGCCAA
TTGGGGCAAACAAACGTGTGGGGTGTGTGGGGTGGTTGCGAGCTAGTCCCGCGTGACCATTACTG
AGTGGTTTGTAGTCGCTGGCCTCCAGCGTGGCCTCTACGTTGGGACACACTGTGTCTGATCACCG
TGTCCTGCACATAGTCAAAGCCACCACCACCCTTGGTGACAATATTTCCTAGTCAATATTCAGTC
ACTACCCATAGTCAACACTCAGTCACTACCATAGTCAATACTCAGTCACTACTCATAGTCAATAC
TCATAGTCAGTACTCCCCGGCTCAGTCGCCTCACTTTTCGTTCGC
Found at i:119369 original size:24 final size:24
Alignment explanation
Indices: 119332--119415 Score: 134
Period size: 24 Copynumber: 3.5 Consensus size: 24
119322 CAATATTTCC
*
119332 TAGTCAATATTCAGTCACTACCCA
1 TAGTCAATACTCAGTCACTACCCA
*
119356 TAGTCAACACTCAGTCACTA-CCA
1 TAGTCAATACTCAGTCACTACCCA
*
119379 TAGTCAATACTCAGTCACTACTCA
1 TAGTCAATACTCAGTCACTACCCA
119403 TAGTCAATACTCA
1 TAGTCAATACTCA
119416 TAGTCAGTAC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 22 0.40
24 33 0.60
ACGTcount: A:0.35, C:0.30, G:0.08, T:0.27
Consensus pattern (24 bp):
TAGTCAATACTCAGTCACTACCCA
Left flanking sequence: Indices 118832 -- 119331
TATCTTTTCTTTACCGTCTTCTTTACGAGTAGCCAGCTTCGTAGACGTTTGCCCGGTCTAATGCC
ATCGCCAGCGGGCTAACATTGCTACGGCTGCTAAAGTCTGGCTAACGTCTGGCTAACGTCTCGTA
TTGCTGTCGAGGGACCGTTGTGTCAGGGCTCGGTTCCGGTGGTTGCGAGATTGGCGAGCCGGACG
ATGCGTGGGAGGTGTGTGTAGCCTCGTCCGCACGTGCTGGTGTCGCCCGAGTCTTGGCTGACGGC
CTCGTGTTCTGGATGGTTGCAGGACAATGGCCACTTCCGTCTGCGTGAACAATGCAGCCAATTGG
GGCAAACAAACGTGTGGGGTGTGTGGGGTGGTTGCGAGCTAGTCCCGCGTGACCATTACTGAGTG
GTTTGTAGTCGCTGGCCTCCAGCGTGGCCTCTACGTTGGGACACACTGTGTCTGATCACCGTGTC
CTGCACATAGTCAAAGCCACCACCACCCTTGGTGACAATATTTCC
Right flanking sequence: Indices 119416 -- 119915
TAGTCAGTACTCCCCGGCTCAGTCGCCTCACTTTTCGTTCGCCTACAGGCGGTGTTTCTTATGCT
TATAATACAAACGGGTATGATCGTCTCTACATGATAATCGACTCCTTCTCCACGTTGGACGAGAT
CGACTTGTGGGGCAACACCTTGGCGCCGTTCACGTAGATCTCGTTCTTCACCTCGACATCCTCAC
CAAGAACAGTGCAGCCCTCGGTTCTGGCCCACTTGCCAATGCGCGACTTCCAGCCGACAATGGTG
TTCTTGACCAACGCGTGGTCCTTGACCTCGGAGTCGGCGAGCAACACCGAGCCAACGACACGGGC
ACCGGCACCAACCTTGACGTTGGGGCCAATGGTGACGTTGGGGCCAATCAACGCGGTGGGGTCGA
TGGTGGCAGAGGGGTCGATCAACACCTTGCCCTCGGGGTGGACAAACTCGCCCTTGGCCAACTTC
TCGGGGTGGTTCTTGGCCACCGAGTTCAAGTAGAGCGCGGTACCA
Found at i:119413 original size:13 final size:13
Alignment explanation
Indices: 119332--119427 Score: 80
Period size: 13 Copynumber: 7.9 Consensus size: 13
119322 CAATATTTCC
*
119332 TAGTCAATATTC-
1 TAGTCAATACTCA
* *
119344 -AGTCACTACCCA
1 TAGTCAATACTCA
*
119356 TAGTCAACACTC-
1 TAGTCAATACTCA
*
119368 -AGTCACTAC-CA
1 TAGTCAATACTCA
119379 TAGTCAATACTC-
1 TAGTCAATACTCA
*
119391 -AGTCACTACTCA
1 TAGTCAATACTCA
119403 TAGTCAATACTCA
1 TAGTCAATACTCA
*
119416 TAGTCAGTACTC
1 TAGTCAATACTC
119428 CCCGGCTCAG
Statistics
Matches: 65, Mismatches: 12, Indels: 13
0.72 0.13 0.14
Matches are distributed among these distances:
10 1 0.02
11 25 0.38
12 8 0.12
13 31 0.48
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.28
Consensus pattern (13 bp):
TAGTCAATACTCA
Left flanking sequence: Indices 118832 -- 119331
TATCTTTTCTTTACCGTCTTCTTTACGAGTAGCCAGCTTCGTAGACGTTTGCCCGGTCTAATGCC
ATCGCCAGCGGGCTAACATTGCTACGGCTGCTAAAGTCTGGCTAACGTCTGGCTAACGTCTCGTA
TTGCTGTCGAGGGACCGTTGTGTCAGGGCTCGGTTCCGGTGGTTGCGAGATTGGCGAGCCGGACG
ATGCGTGGGAGGTGTGTGTAGCCTCGTCCGCACGTGCTGGTGTCGCCCGAGTCTTGGCTGACGGC
CTCGTGTTCTGGATGGTTGCAGGACAATGGCCACTTCCGTCTGCGTGAACAATGCAGCCAATTGG
GGCAAACAAACGTGTGGGGTGTGTGGGGTGGTTGCGAGCTAGTCCCGCGTGACCATTACTGAGTG
GTTTGTAGTCGCTGGCCTCCAGCGTGGCCTCTACGTTGGGACACACTGTGTCTGATCACCGTGTC
CTGCACATAGTCAAAGCCACCACCACCCTTGGTGACAATATTTCC
Right flanking sequence: Indices 119428 -- 119927
CCCGGCTCAGTCGCCTCACTTTTCGTTCGCCTACAGGCGGTGTTTCTTATGCTTATAATACAAAC
GGGTATGATCGTCTCTACATGATAATCGACTCCTTCTCCACGTTGGACGAGATCGACTTGTGGGG
CAACACCTTGGCGCCGTTCACGTAGATCTCGTTCTTCACCTCGACATCCTCACCAAGAACAGTGC
AGCCCTCGGTTCTGGCCCACTTGCCAATGCGCGACTTCCAGCCGACAATGGTGTTCTTGACCAAC
GCGTGGTCCTTGACCTCGGAGTCGGCGAGCAACACCGAGCCAACGACACGGGCACCGGCACCAAC
CTTGACGTTGGGGCCAATGGTGACGTTGGGGCCAATCAACGCGGTGGGGTCGATGGTGGCAGAGG
GGTCGATCAACACCTTGCCCTCGGGGTGGACAAACTCGCCCTTGGCCAACTTCTCGGGGTGGTTC
TTGGCCACCGAGTTCAAGTAGAGCGCGGTACCAGCCAAGAAGTCC
Found at i:120949 original size:16 final size:16
Alignment explanation
Indices: 120928--120958 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120918 GGCCGCGTGG
*
120928 GACGAGCCCAGCGGGT
1 GACGAGACCAGCGGGT
120944 GACGAGACCAGCGGG
1 GACGAGACCAGCGGG
120959 GGGAGAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.29, G:0.45, T:0.03
Consensus pattern (16 bp):
GACGAGACCAGCGGGT
Left flanking sequence: Indices 120428 -- 120927
GGGACGGTAGTTGACCGCAAGCACAATGTCGGTGACACCGGCCTTGGCAAGAGCCTCAATCTGGT
GCAAGATCATGGCCCGGTTGGCGAACTCCACAAGGGGCTTCGGGAGCGAAAGCGTGAGCGGTCTC
AACCGGGTACCGTACCCGCCAACAAGAATTAAACCCTTCATTGTACTGAAATTTGTCGTCAGAGA
AAAGATTTTCTGGCAAGGCAACACGTATTTATATTGAACGCGGTGGGTGGGGCGAGCGCGACTGG
GCTGTGTGCAGGCGACACGTACACGGGGGGAGATGAAATGGCCAGGGGTGGCGCGGGTTTGTGGG
GGCGGGTGCGGGCGGGGGAAGCTGGAGGTGGGTGGTTTTGGCGTGCTCTGCTCGGGGGTGCTTTC
GGTTGGTCTGTAGCGGTGGCGGTTCTCGAGCTGTTTCGATTTTTCAGAAGAGGAGTGGAGGAGTA
CGAGGAGGTGGCTTGACGAGACGAGACGAAATAGGGGCCGCGTGG
Right flanking sequence: Indices 120959 -- 121458
GGGAGAGAAATGCGGGTGACGGCAGTGAGGGGAACCAAAGCGTGACTGGTCACCCCTCCGTGCGT
TTTATTCGCTACAGCCCTACCCACGTTCGGGCAAAAATTCCGGTGCCGCGTCGCAGCAGCGAAAG
GGTGGTAATGGCGCAGGGGTCAGGGACAGAAAGGGGAGGGGGCCTGCGAACGTTCGTTGGGGTTT
GTTGTGGCAGTAGCCCCGACCGTTGCTAAGTCAATCCACCCCCTGTTACTATTTTGGTGGCTGTT
GACACAACAAAGCGTTAGGCGCCCTGGCGCACGGCCCGATTGGGAAAATGACACGGTTGCAAAGC
GGGTAGAGGGCGGATAAACTCGGAAACGGTGGCCACGGGGGGACAATCGGCGACATACGAGGTGC
GGGCGTGTGCACGGCGCGGGTGGGCGCGTCAGACGCGGTGGGCTTGACGAGGGAGCCCGTTTGGG
CAGGTTGCCAGCCTTTCGGGCTACAGTGTTGCGGCTGACGCTGGC
Found at i:121543 original size:23 final size:21
Alignment explanation
Indices: 121493--121546 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
121483 GGACGAGAAG
*
121493 CACGAGAGAATAGGAAGAACA
1 CACGAGAGAACAGGAAGAACA
121514 CACGAGAGAACAGGAAGAACA
1 CACGAGAGAACAGGAAGAACA
*
121535 CACGGGAGAACA
1 CACGAGAGAACA
121547 CGGACAGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.50, C:0.19, G:0.30, T:0.02
Consensus pattern (21 bp):
CACGAGAGAACAGGAAGAACA
Left flanking sequence: Indices 120993 -- 121492
CCAAAGCGTGACTGGTCACCCCTCCGTGCGTTTTATTCGCTACAGCCCTACCCACGTTCGGGCAA
AAATTCCGGTGCCGCGTCGCAGCAGCGAAAGGGTGGTAATGGCGCAGGGGTCAGGGACAGAAAGG
GGAGGGGGCCTGCGAACGTTCGTTGGGGTTTGTTGTGGCAGTAGCCCCGACCGTTGCTAAGTCAA
TCCACCCCCTGTTACTATTTTGGTGGCTGTTGACACAACAAAGCGTTAGGCGCCCTGGCGCACGG
CCCGATTGGGAAAATGACACGGTTGCAAAGCGGGTAGAGGGCGGATAAACTCGGAAACGGTGGCC
ACGGGGGGACAATCGGCGACATACGAGGTGCGGGCGTGTGCACGGCGCGGGTGGGCGCGTCAGAC
GCGGTGGGCTTGACGAGGGAGCCCGTTTGGGCAGGTTGCCAGCCTTTCGGGCTACAGTGTTGCGG
CTGACGCTGGCATGGTACGAGAATGCAAGGTCAAGGGACGAGAAG
Right flanking sequence: Indices 121547 -- 122046
CGGACAGTAGGACGAACAAACGAACAAACCCAAACACGTAGGCACAAAGAGATGAATCGAGACGA
GGTGAACAATGGTCAGTAGATCAGGTACCAGGACACCGTGTCACCACGGGCCCATGACGAAAGGA
GGTGGTTCGTCACCTGGAACAGCCACACACGGCGTCTGTTTTCTGCCATTGTTGACCGTTGAAAA
TGCAATTTTGCAGCCGAAAAGCGTGAATTTCATCGGTAACCATTACACAAAACGGCCGATGAGAA
GAGAGATGGTAGGAAGAGAGGAGTTACGAGTGGGAGTAGAATTGAAAGAAGGGGCTCCGTAGGCG
AGAAATCACACAACCGGTGTTGTTGCGTGCTCCGTGTTACTTATAATTTCCTGTCGTGGGCCCAC
GGGGTTAAAATTTTCCATGTTACTATTTTTGGCAGCAAGTTTTTCCGATGGCCCACGCAATGAGG
GCTAAAAGGTAGCAGTGCTGTAAAAGGTGCAGTGCTTAGAAGGGT
Found at i:122146 original size:17 final size:18
Alignment explanation
Indices: 122005--122110 Score: 109
Period size: 17 Copynumber: 6.2 Consensus size: 18
121995 AATGAGGGCT
*
122005 AAAA-GGTAGCAGTGCTGT
1 AAAAGGGTAGCAGTGCT-A
*
122023 AAAA-GGT-GCAGTGCTT
1 AAAAGGGTAGCAGTGCTA
*
122039 AGAAGGGTAG-AGTGCTA
1 AAAAGGGTAGCAGTGCTA
122056 AAAAGGGTAGC-GTGCTA
1 AAAAGGGTAGCAGTGCTA
* *
122073 AAGAGGGT-GCGGTGCTA
1 AAAAGGGTAGCAGTGCTA
122090 AAAAGGGT-GCAGTGCTA
1 AAAAGGGTAGCAGTGCTA
122107 AAAA
1 AAAA
122111 CAGTACTAAA
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
16 6 0.08
17 64 0.82
18 8 0.10
ACGTcount: A:0.35, C:0.10, G:0.36, T:0.19
Consensus pattern (18 bp):
AAAAGGGTAGCAGTGCTA
Left flanking sequence: Indices 121505 -- 122004
GGAAGAACACACGAGAGAACAGGAAGAACACACGGGAGAACACGGACAGTAGGACGAACAAACGA
ACAAACCCAAACACGTAGGCACAAAGAGATGAATCGAGACGAGGTGAACAATGGTCAGTAGATCA
GGTACCAGGACACCGTGTCACCACGGGCCCATGACGAAAGGAGGTGGTTCGTCACCTGGAACAGC
CACACACGGCGTCTGTTTTCTGCCATTGTTGACCGTTGAAAATGCAATTTTGCAGCCGAAAAGCG
TGAATTTCATCGGTAACCATTACACAAAACGGCCGATGAGAAGAGAGATGGTAGGAAGAGAGGAG
TTACGAGTGGGAGTAGAATTGAAAGAAGGGGCTCCGTAGGCGAGAAATCACACAACCGGTGTTGT
TGCGTGCTCCGTGTTACTTATAATTTCCTGTCGTGGGCCCACGGGGTTAAAATTTTCCATGTTAC
TATTTTTGGCAGCAAGTTTTTCCGATGGCCCACGCAATGAGGGCT
Right flanking sequence: Indices 122111 -- 122610
CAGTACTAAAAAGGCAGCAGGCTAAAAAGGGTAGCATGGTGGTTCTACCTACACGCAATTCGTAT
ATCTATGGTATTAATCATTATAAATTTATATGCTGGAGAATGCAGAGGACTTAGTCCTGGGTGTA
GGCGTACTTGGAGAAGGTTCTAATCTTGGCGCCCCAGATGTAGAAGCAGTAGGGAATGGCACAGC
AAGCCAACGAGATGAAGCCCATCAAGGAAGTGGCCCACTCGTAGCCCAACTTGTTGTACATCTGA
ATGGTGAAAAGAGGGCAGGCAGCACCCCACACGGACCGCACAAACGTCTTGGCAGCCAAAGCCAG
GGCAGCGTAGTGCTGGTACGAGTCGACAATGTAGTTGTTGGCGGGGTTGTACAACCCACAGAAGC
CGAAGCCGACAGCCAAGCCCGAGAAGCAAGGACCAGCCCACGAGACGTGGGGGTACGACGACCAG
GCAAAGGGGAACAAACCAACGGGGACAAACCAGCACAGCCACATC
Found at i:125134 original size:12 final size:12
Alignment explanation
Indices: 125117--125154 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
125107 CGTCCTAGGA
125117 TGGCGTGCCCCG
1 TGGCGTGCCCCG
125129 TGGCGTGCCCCG
1 TGGCGTGCCCCG
125141 TGGCGTGCCCCG
1 TGGCGTGCCCCG
125153 TG
1 TG
125155 CCAGTAGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.39, G:0.42, T:0.18
Consensus pattern (12 bp):
TGGCGTGCCCCG
Left flanking sequence: Indices 124617 -- 125116
GCCCTTTGCCGTGCCCGCTGCCGGCCCACGGCGTGCGTGCCTGGACTGCCTAGTCACGTTCCTCG
ATCTCGATATACGCCTGGTACGCGCACGACTGGGGATTGAGCCTCTCGCCTGCACACACGCTAAC
AAGAGCCGGCTCGACCGGGCCCGCGATACCCGTGGACAGGTGAGGGGTAGGTGCTGGGCCGCCAA
GCAGTGCAGTCCTTCAACAGTGCATCCCCCCTTCGGTTGGCACGGACAGCAACCACAGTGGCCCC
CCGGGCTCTGGTCGACTCGAGTGGTCGCTCTGTGTGCAGGCGTCGGCGTGATTAAACCACACTGC
CGGTTTGCGCCATATATTGCCATTTACGAACTTAGTTCGGCGAGATTTAGCGGTCGCCGATACCG
ACAGAGACGGCGCGTACAGCGGACGGACGCGTTCAGGGGGGCGGTGCAGGCACCTGGTGTGCTCG
CAGGCGCCATTGTTGCCATCGGTTACAAAGCTAGCCGTCCTAGGA
Right flanking sequence: Indices 125155 -- 125654
CCAGTAGTCACCTGTATCCCCACCACGTAGCAAGTACGACATCGCAGGGGCAGGTGGACCAGAGC
GTGGCCGGTTTGCAGAGACCACCCACGTCCGGTGGATCCGTCGGGTTCGCGTGCCACCACCTCGC
GCGAGTTGGCGGGCTTTCTTTTTCCTTCTCTTGCTCTGGGCTAGTTTCCCCATTGGGCGGCAGTG
GTCACCGAAACCGGGGATAGACCCCACACAAAAAATGGTCGCCGCGGAAGCGGCTTTCAGACCCA
GGCTGCCTCCAGGAGACCCAGGCGGGTTTCGACTATTCGGAGTTTGGCCTCATGCAAGTGGCATG
CAAGAGACGCTGGTGTGCCGGTGGCTGACGCGTTCGGTGCGTTTTTAACGGTTCGTAGCGGTGGC
AAGGGAGGCCTCGGGAGGGGAGGAGAGGTGCCCGGGGGTGCGCGGGGGCGGTGGGCGTGGTGGCC
AAGGGCTTTCGTGGTGTTTTGCTACGGTTTGGGCCGGTGGCGGCC
Found at i:126602 original size:14 final size:14
Alignment explanation
Indices: 126583--126609 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
126573 AATAACCAGA
126583 AGTCTTAAGGAACG
1 AGTCTTAAGGAACG
126597 AGTCTTAAGGAAC
1 AGTCTTAAGGAAC
126610 TCTACATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (14 bp):
AGTCTTAAGGAACG
Left flanking sequence: Indices 126083 -- 126582
AGGCACCGGTGCATAAAACCGCTGCCCATGGAGCAGTGCCTGGAGACTGGCCTATTGTTAGTGTC
ACGGGTTCAGTGTTGTCCATGGGTTGTAGTCACAGAGGTAGTCGGAGAGGTAGTCGAAGAGGTAG
TCGAAGACCTAGAGTACAAAGCCGCCAAAAAGTTGGTGAGTTGGGCTGTGGAAGAGAGGGAAGTG
TGTTCCATTGGCCTTTCTCGCTGTCTGGTTTGGCTTCTTCCTACTCGTATTGTCTATTTCGTGGA
TTGTGTCTATTGTTGGTCCTTGTTTCATGTTGGCCACACACGTCACCACTGAGTGAAATCAAGAA
GCCTCACGCCCAGAGTCTCAAAGCAGGTTCTGGTGCTTTCCATGCGTTTGCTGTCCCTGTGGTGC
GCTTTTGTCCCTTCTGTCAAAGTCACTCAAATAGAGTTGATTAGTGACATGTCATGGCGTCACCA
AATGGCACGTCACCGAATGCAGACAAAACCGCCCGAATAACCAGA
Right flanking sequence: Indices 126610 -- 127109
TCTACATAACAAACAGAACCATATAAGCCGTCTCTACTCCGGAAACAGTCCTCTACTCCGGAAAC
AGTCCTCTATTCCAGGAATAAGCCTTCTCTACCCCGAATACAGGCCTCCTCACCCTGCTACGTCT
CCAGTCGTACTATTCATTAACTCTATCAACAGTAAGCCCCACGCAAGGCGTTGGGGGGGTCTGGG
GGGGCGCCGCTTGCGGCCCCCCCAGCTACAATACCCATCATCCTGTACAACACCCGATCCACCCC
GTAATGCTATATCACCCCTTGTTGGCACCAATGGCCCACCCGAGCCCCAGAACGAACATCTTCTG
CAAGTTGCGCGACGCCTGGGTCGACGTGGTGGACGCATCGCTCAAGAGCGACAGCGTCAACTGGT
GGACCTCGTCCTGGACCAGCGACGGCGCCTGCTGGGCGACAAACTGGCAGTCGGTCACCACCTGC
AAGGCCTCGGGCGAGTAGAACAGCGCCAACTGCGCGTTCACCAGC
Found at i:126665 original size:19 final size:19
Alignment explanation
Indices: 126641--126683 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
126631 TATAAGCCGT
126641 CTCTACTCCGGAAACAGTC
1 CTCTACTCCGGAAACAGTC
126660 CTCTACTCCGGAAACAGTC
1 CTCTACTCCGGAAACAGTC
126679 CTCTA
1 CTCTA
126684 TTCCAGGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.37, G:0.14, T:0.23
Consensus pattern (19 bp):
CTCTACTCCGGAAACAGTC
Left flanking sequence: Indices 126141 -- 126640
TAGTGTCACGGGTTCAGTGTTGTCCATGGGTTGTAGTCACAGAGGTAGTCGGAGAGGTAGTCGAA
GAGGTAGTCGAAGACCTAGAGTACAAAGCCGCCAAAAAGTTGGTGAGTTGGGCTGTGGAAGAGAG
GGAAGTGTGTTCCATTGGCCTTTCTCGCTGTCTGGTTTGGCTTCTTCCTACTCGTATTGTCTATT
TCGTGGATTGTGTCTATTGTTGGTCCTTGTTTCATGTTGGCCACACACGTCACCACTGAGTGAAA
TCAAGAAGCCTCACGCCCAGAGTCTCAAAGCAGGTTCTGGTGCTTTCCATGCGTTTGCTGTCCCT
GTGGTGCGCTTTTGTCCCTTCTGTCAAAGTCACTCAAATAGAGTTGATTAGTGACATGTCATGGC
GTCACCAAATGGCACGTCACCGAATGCAGACAAAACCGCCCGAATAACCAGAAGTCTTAAGGAAC
GAGTCTTAAGGAACTCTACATAACAAACAGAACCATATAAGCCGT
Right flanking sequence: Indices 126684 -- 127183
TTCCAGGAATAAGCCTTCTCTACCCCGAATACAGGCCTCCTCACCCTGCTACGTCTCCAGTCGTA
CTATTCATTAACTCTATCAACAGTAAGCCCCACGCAAGGCGTTGGGGGGGTCTGGGGGGGCGCCG
CTTGCGGCCCCCCCAGCTACAATACCCATCATCCTGTACAACACCCGATCCACCCCGTAATGCTA
TATCACCCCTTGTTGGCACCAATGGCCCACCCGAGCCCCAGAACGAACATCTTCTGCAAGTTGCG
CGACGCCTGGGTCGACGTGGTGGACGCATCGCTCAAGAGCGACAGCGTCAACTGGTGGACCTCGT
CCTGGACCAGCGACGGCGCCTGCTGGGCGACAAACTGGCAGTCGGTCACCACCTGCAAGGCCTCG
GGCGAGTAGAACAGCGCCAACTGCGCGTTCACCAGCAGCCACTGGCCCACGACGATGCGCTGGCA
GTCGCTGGGGTCCATGGCGGCGAGACAGCGCCCGAGAATCGTCCG
Found at i:128826 original size:12 final size:12
Alignment explanation
Indices: 128809--128834 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
128799 CACTGCTCGA
128809 GGGCCAGCGGGT
1 GGGCCAGCGGGT
128821 GGGCCAGCGGGT
1 GGGCCAGCGGGT
128833 GG
1 GG
128835 TCCGGGTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.62, T:0.08
Consensus pattern (12 bp):
GGGCCAGCGGGT
Left flanking sequence: Indices 128309 -- 128808
CGGGGCCCCCAGCACCACCTGGGCCACGTCGAGGGGCTCGGCCGCCAGCTCAAACAAGTCGAGCG
TGCGGGCCACCACGTCGTACACCCGGAGGAGCTTCACCAGCAGCAACCGCTGGGCCAAGCCCCCC
TCGTGGACGCTGAGAAAGTACACCTGGGCCAAAAAGAGCCTTAAGAGCGGGCGGTAGGCGTCGAG
CTCGAGCTCGGCCTCCACCATCGCCGCGAACACCGTCTCCAACCGCTCGAAATGCGCCACCACGT
CCTCGGGCTCGTCGTCAAAGAGCAGGTGTTCGAGCGGGGCAAGGTCGCCCCCGTGGTGCCCCGCG
AGCGGGAGCACGGCGTGGGCCAACCACGCGCCGGCGTCGGAGCTGGCGCCGCGCACCACCGCGAA
CTGGTGCGCGTGGGTGTCGGGGTGCAAGTAGTCGCGCAACAGCACCGGGTCGGCACAGTGGGAGT
GGTAGTAGCGGTAGGGCAAGAGCACGCCGCGGTACCACTGCTCGA
Right flanking sequence: Indices 128835 -- 129334
TCCGGGTCGAACAGGAGCTTGAGCAACTCGGCGTAGTGGTCGACGTCCAGGCAGTACCCGGCGTC
GTGGTGGATCTTGGCGCGGATCCACCCGTCGGTGGTGGCGTCGGTGAAGTGGTGGTCGGTGCGGC
ACCGGTCGACGGTGCTGGCGACAAGTTCGGAGCACTCGCTGGCGGGCACCGGGTGCATTGGCACC
GCCGCCAATGTGCGCACCCACCGCGCCAACGTGGCGGCCAGGGTCAGCGCGGGGAAGGTGTAGGC
TATGATGAGGCAGTGGGCCACGTAGACGGACTCGGGGGCGGCCTCGTTGGTGACGTACTCGTCGC
GGAGGTGGTCGTCCACGTCGCTGGGGCTGGCCAGCCCGAGCAATTCGATGAGGCGGTAGTGGTCG
TCCATGGCAAGCAAGCACACGCCGCACCGATTTGGTGTGCGCGGTGTGCGCGCGAGCACAGGCAC
AAACCGGCAGGGCACAGAGAGCACGAGCGAGCACAGAGCGAGCAC
Found at i:129330 original size:11 final size:11
Alignment explanation
Indices: 129308--129345 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
129298 AGGGCACAGA
129308 GAGCAC-GAGC
1 GAGCACAGAGC
129318 GAGCACAGAGC
1 GAGCACAGAGC
129329 GAGCACAGAGC
1 GAGCACAGAGC
129340 GGAGCA
1 -GAGCA
129346 GGAGACCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 6 0.23
11 15 0.58
12 5 0.19
ACGTcount: A:0.34, C:0.26, G:0.39, T:0.00
Consensus pattern (11 bp):
GAGCACAGAGC
Left flanking sequence: Indices 128808 -- 129307
AGGGCCAGCGGGTGGGCCAGCGGGTGGTCCGGGTCGAACAGGAGCTTGAGCAACTCGGCGTAGTG
GTCGACGTCCAGGCAGTACCCGGCGTCGTGGTGGATCTTGGCGCGGATCCACCCGTCGGTGGTGG
CGTCGGTGAAGTGGTGGTCGGTGCGGCACCGGTCGACGGTGCTGGCGACAAGTTCGGAGCACTCG
CTGGCGGGCACCGGGTGCATTGGCACCGCCGCCAATGTGCGCACCCACCGCGCCAACGTGGCGGC
CAGGGTCAGCGCGGGGAAGGTGTAGGCTATGATGAGGCAGTGGGCCACGTAGACGGACTCGGGGG
CGGCCTCGTTGGTGACGTACTCGTCGCGGAGGTGGTCGTCCACGTCGCTGGGGCTGGCCAGCCCG
AGCAATTCGATGAGGCGGTAGTGGTCGTCCATGGCAAGCAAGCACACGCCGCACCGATTTGGTGT
GCGCGGTGTGCGCGCGAGCACAGGCACAAACCGGCAGGGCACAGA
Right flanking sequence: Indices 129346 -- 129845
GGAGACCACAGGTACCACGGAGAGCAGTGTTACAGAATATCCAGGACAAGAAGTGAACTAGTTTA
GGCATACGGAATAAGGACTAGTGGCCATCTCGAAGCATTCCAAGAGGACGATCCAGTGAAAATCA
GTGTTTACTGTTTGAATATTACCATAAGTGTTTGAATTCCCAGTCGCTAACTGTTTGGACATTAC
ACTTTCAACAAACACCCACTGTTTAGTCCACTCTCGGTTACTACCCAGTTCTACTCAGTTACGAC
TCAGGAAAATCTCAGTTACCTCCCAGTTAACTCCCTTTAAATCCCAGTTACCCCAGTTAACTCCC
AGTTACTACTCAGTTAACTCAGAGTTACTCCCAATCACCTCCCAGTTACTCACCAGTTACTCACC
AGTTACCTCCTTCCTCACTCACTCACACCTCAGTGACACCCACACCCCACACACACACACACACA
CACACACACACCATGCTGACACTAACACCCAAACAGTCCCAGCTC
Found at i:129334 original size:21 final size:21
Alignment explanation
Indices: 129301--129345 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 21
129291 AACCGGCAGG
129301 GCACAGAGAGCAC-GAGC-GA
1 GCACAGAGAGCACAGAGCGGA
129320 GCACAGAGCGAGCACAGAGCGGA
1 GCACAGA--GAGCACAGAGCGGA
129343 GCA
1 GCA
129346 GGAGACCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.32
21 6 0.27
22 4 0.18
23 5 0.23
ACGTcount: A:0.36, C:0.27, G:0.38, T:0.00
Consensus pattern (21 bp):
GCACAGAGAGCACAGAGCGGA
Left flanking sequence: Indices 128801 -- 129300
CTGCTCGAGGGCCAGCGGGTGGGCCAGCGGGTGGTCCGGGTCGAACAGGAGCTTGAGCAACTCGG
CGTAGTGGTCGACGTCCAGGCAGTACCCGGCGTCGTGGTGGATCTTGGCGCGGATCCACCCGTCG
GTGGTGGCGTCGGTGAAGTGGTGGTCGGTGCGGCACCGGTCGACGGTGCTGGCGACAAGTTCGGA
GCACTCGCTGGCGGGCACCGGGTGCATTGGCACCGCCGCCAATGTGCGCACCCACCGCGCCAACG
TGGCGGCCAGGGTCAGCGCGGGGAAGGTGTAGGCTATGATGAGGCAGTGGGCCACGTAGACGGAC
TCGGGGGCGGCCTCGTTGGTGACGTACTCGTCGCGGAGGTGGTCGTCCACGTCGCTGGGGCTGGC
CAGCCCGAGCAATTCGATGAGGCGGTAGTGGTCGTCCATGGCAAGCAAGCACACGCCGCACCGAT
TTGGTGTGCGCGGTGTGCGCGCGAGCACAGGCACAAACCGGCAGG
Right flanking sequence: Indices 129346 -- 129845
GGAGACCACAGGTACCACGGAGAGCAGTGTTACAGAATATCCAGGACAAGAAGTGAACTAGTTTA
GGCATACGGAATAAGGACTAGTGGCCATCTCGAAGCATTCCAAGAGGACGATCCAGTGAAAATCA
GTGTTTACTGTTTGAATATTACCATAAGTGTTTGAATTCCCAGTCGCTAACTGTTTGGACATTAC
ACTTTCAACAAACACCCACTGTTTAGTCCACTCTCGGTTACTACCCAGTTCTACTCAGTTACGAC
TCAGGAAAATCTCAGTTACCTCCCAGTTAACTCCCTTTAAATCCCAGTTACCCCAGTTAACTCCC
AGTTACTACTCAGTTAACTCAGAGTTACTCCCAATCACCTCCCAGTTACTCACCAGTTACTCACC
AGTTACCTCCTTCCTCACTCACTCACACCTCAGTGACACCCACACCCCACACACACACACACACA
CACACACACACCATGCTGACACTAACACCCAAACAGTCCCAGCTC
Found at i:129662 original size:9 final size:10
Alignment explanation
Indices: 129618--129741 Score: 90
Period size: 11 Copynumber: 11.7 Consensus size: 10
129608 AGGAAAATCT
129618 CAGTTACCTCC
1 CAGTTA-CTCC
129629 CAGTTAACTCC
1 CAGTT-ACTCC
* *
129640 C-TTTAAATCC
1 CAGTT-ACTCC
129650 CAGTTAC-CC
1 CAGTTACTCC
129659 CAGTTAACTCC
1 CAGTT-ACTCC
*
129670 CAGTTACTACT
1 CAGTTACT-CC
*
129681 CAGTTAACTCA
1 CAGTT-ACTCC
*
129692 GAGTTACTCC
1 CAGTTACTCC
* *
129702 CAATCACCTCC
1 CAGTTA-CTCC
129713 CAGTTACTCAC
1 CAGTTACTC-C
129724 CAGTTACTCAC
1 CAGTTACTC-C
129735 CAGTTAC
1 CAGTTAC
129742 CTCCTTCCTC
Statistics
Matches: 92, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
9 7 0.08
10 24 0.26
11 57 0.62
12 4 0.04
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.28
Consensus pattern (10 bp):
CAGTTACTCC
Left flanking sequence: Indices 129118 -- 129617
AGACGGACTCGGGGGCGGCCTCGTTGGTGACGTACTCGTCGCGGAGGTGGTCGTCCACGTCGCTG
GGGCTGGCCAGCCCGAGCAATTCGATGAGGCGGTAGTGGTCGTCCATGGCAAGCAAGCACACGCC
GCACCGATTTGGTGTGCGCGGTGTGCGCGCGAGCACAGGCACAAACCGGCAGGGCACAGAGAGCA
CGAGCGAGCACAGAGCGAGCACAGAGCGGAGCAGGAGACCACAGGTACCACGGAGAGCAGTGTTA
CAGAATATCCAGGACAAGAAGTGAACTAGTTTAGGCATACGGAATAAGGACTAGTGGCCATCTCG
AAGCATTCCAAGAGGACGATCCAGTGAAAATCAGTGTTTACTGTTTGAATATTACCATAAGTGTT
TGAATTCCCAGTCGCTAACTGTTTGGACATTACACTTTCAACAAACACCCACTGTTTAGTCCACT
CTCGGTTACTACCCAGTTCTACTCAGTTACGACTCAGGAAAATCT
Right flanking sequence: Indices 129742 -- 130241
CTCCTTCCTCACTCACTCACACCTCAGTGACACCCACACCCCACACACACACACACACACACACA
CACACCATGCTGACACTAACACCCAAACAGTCCCAGCTCCTCGAAGAGCTGGTGGCCCACACCGT
CGCCAACTACGACAAGCTCCTGGCCCAGTACCTCCAGCTCCGCCAGGACGTGTACAGGCTCCACG
CACTGGGGCTCAACCCGGACGCGGTGGCCACCACCCGGCGCCAGCTCGACGCCGTGGCGGTGCAG
TTCCGGCACCATGTGCACCTGGTGGTGGCGGTGCTCGACTTGGCGGCCGCCCCCGCCCCCGGGGA
CGCGTCCTCCCCCATCGCCGCCCGGCTCGACCAGCTCGAGGCCGAGCGCCAGCGGCTCGAGGCCG
AGATCCGCCACATCAACCACGAGCAAAAACCAATGCTCGCCCAGCTCCATCGCCACATCGACCGG
TTCTACGCCGAGTTGAAGCCGCCGCGGCCCCAGCGCAAAAAGGGG
Found at i:129663 original size:30 final size:32
Alignment explanation
Indices: 129612--129670 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
129602 CGACTCAGGA
*
129612 AAATCTCAGTTACCTCCCAGTTAACTCCCTTT
1 AAATCCCAGTTACCTCCCAGTTAACTCCCTTT
129644 AAATCCCAGTTA-C-CCCAGTTAACTCCC
1 AAATCCCAGTTACCTCCCAGTTAACTCCC
129671 AGTTACTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 14 0.54
31 1 0.04
32 11 0.42
ACGTcount: A:0.27, C:0.37, G:0.07, T:0.29
Consensus pattern (32 bp):
AAATCCCAGTTACCTCCCAGTTAACTCCCTTT
Left flanking sequence: Indices 129112 -- 129611
CCACGTAGACGGACTCGGGGGCGGCCTCGTTGGTGACGTACTCGTCGCGGAGGTGGTCGTCCACG
TCGCTGGGGCTGGCCAGCCCGAGCAATTCGATGAGGCGGTAGTGGTCGTCCATGGCAAGCAAGCA
CACGCCGCACCGATTTGGTGTGCGCGGTGTGCGCGCGAGCACAGGCACAAACCGGCAGGGCACAG
AGAGCACGAGCGAGCACAGAGCGAGCACAGAGCGGAGCAGGAGACCACAGGTACCACGGAGAGCA
GTGTTACAGAATATCCAGGACAAGAAGTGAACTAGTTTAGGCATACGGAATAAGGACTAGTGGCC
ATCTCGAAGCATTCCAAGAGGACGATCCAGTGAAAATCAGTGTTTACTGTTTGAATATTACCATA
AGTGTTTGAATTCCCAGTCGCTAACTGTTTGGACATTACACTTTCAACAAACACCCACTGTTTAG
TCCACTCTCGGTTACTACCCAGTTCTACTCAGTTACGACTCAGGA
Right flanking sequence: Indices 129671 -- 130170
AGTTACTACTCAGTTAACTCAGAGTTACTCCCAATCACCTCCCAGTTACTCACCAGTTACTCACC
AGTTACCTCCTTCCTCACTCACTCACACCTCAGTGACACCCACACCCCACACACACACACACACA
CACACACACACCATGCTGACACTAACACCCAAACAGTCCCAGCTCCTCGAAGAGCTGGTGGCCCA
CACCGTCGCCAACTACGACAAGCTCCTGGCCCAGTACCTCCAGCTCCGCCAGGACGTGTACAGGC
TCCACGCACTGGGGCTCAACCCGGACGCGGTGGCCACCACCCGGCGCCAGCTCGACGCCGTGGCG
GTGCAGTTCCGGCACCATGTGCACCTGGTGGTGGCGGTGCTCGACTTGGCGGCCGCCCCCGCCCC
CGGGGACGCGTCCTCCCCCATCGCCGCCCGGCTCGACCAGCTCGAGGCCGAGCGCCAGCGGCTCG
AGGCCGAGATCCGCCACATCAACCACGAGCAAAAACCAATGCTCG
Found at i:129740 original size:43 final size:43
Alignment explanation
Indices: 129649--129742 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
129639 CCTTTAAATC
* *
129649 CCAGTTACCCCAGTTAACTCCCAGTTACTACTCAGTTAACTCA
1 CCAGTTACCCCAATCAACTCCCAGTTACTACTCAGTTAACTCA
* *
129692 -GAGTTACTCCCAATCACCTCCCAGTTACTCAC-CAGTT-ACTCA
1 CCAGTTAC-CCCAATCAACTCCCAGTTACT-ACTCAGTTAACTCA
129734 CCAGTTACC
1 CCAGTTACC
129743 TCCTTCCTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
42 12 0.28
43 29 0.67
44 2 0.05
ACGTcount: A:0.27, C:0.37, G:0.10, T:0.27
Consensus pattern (43 bp):
CCAGTTACCCCAATCAACTCCCAGTTACTACTCAGTTAACTCA
Left flanking sequence: Indices 129149 -- 129648
GTACTCGTCGCGGAGGTGGTCGTCCACGTCGCTGGGGCTGGCCAGCCCGAGCAATTCGATGAGGC
GGTAGTGGTCGTCCATGGCAAGCAAGCACACGCCGCACCGATTTGGTGTGCGCGGTGTGCGCGCG
AGCACAGGCACAAACCGGCAGGGCACAGAGAGCACGAGCGAGCACAGAGCGAGCACAGAGCGGAG
CAGGAGACCACAGGTACCACGGAGAGCAGTGTTACAGAATATCCAGGACAAGAAGTGAACTAGTT
TAGGCATACGGAATAAGGACTAGTGGCCATCTCGAAGCATTCCAAGAGGACGATCCAGTGAAAAT
CAGTGTTTACTGTTTGAATATTACCATAAGTGTTTGAATTCCCAGTCGCTAACTGTTTGGACATT
ACACTTTCAACAAACACCCACTGTTTAGTCCACTCTCGGTTACTACCCAGTTCTACTCAGTTACG
ACTCAGGAAAATCTCAGTTACCTCCCAGTTAACTCCCTTTAAATC
Right flanking sequence: Indices 129743 -- 130242
TCCTTCCTCACTCACTCACACCTCAGTGACACCCACACCCCACACACACACACACACACACACAC
ACACCATGCTGACACTAACACCCAAACAGTCCCAGCTCCTCGAAGAGCTGGTGGCCCACACCGTC
GCCAACTACGACAAGCTCCTGGCCCAGTACCTCCAGCTCCGCCAGGACGTGTACAGGCTCCACGC
ACTGGGGCTCAACCCGGACGCGGTGGCCACCACCCGGCGCCAGCTCGACGCCGTGGCGGTGCAGT
TCCGGCACCATGTGCACCTGGTGGTGGCGGTGCTCGACTTGGCGGCCGCCCCCGCCCCCGGGGAC
GCGTCCTCCCCCATCGCCGCCCGGCTCGACCAGCTCGAGGCCGAGCGCCAGCGGCTCGAGGCCGA
GATCCGCCACATCAACCACGAGCAAAAACCAATGCTCGCCCAGCTCCATCGCCACATCGACCGGT
TCTACGCCGAGTTGAAGCCGCCGCGGCCCCAGCGCAAAAAGGGGC
Found at i:129790 original size:2 final size:2
Alignment explanation
Indices: 129783--129811 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
129773 ACCCACACCC
129783 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
129812 CATGCTGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Left flanking sequence: Indices 129283 -- 129782
CAGGCACAAACCGGCAGGGCACAGAGAGCACGAGCGAGCACAGAGCGAGCACAGAGCGGAGCAGG
AGACCACAGGTACCACGGAGAGCAGTGTTACAGAATATCCAGGACAAGAAGTGAACTAGTTTAGG
CATACGGAATAAGGACTAGTGGCCATCTCGAAGCATTCCAAGAGGACGATCCAGTGAAAATCAGT
GTTTACTGTTTGAATATTACCATAAGTGTTTGAATTCCCAGTCGCTAACTGTTTGGACATTACAC
TTTCAACAAACACCCACTGTTTAGTCCACTCTCGGTTACTACCCAGTTCTACTCAGTTACGACTC
AGGAAAATCTCAGTTACCTCCCAGTTAACTCCCTTTAAATCCCAGTTACCCCAGTTAACTCCCAG
TTACTACTCAGTTAACTCAGAGTTACTCCCAATCACCTCCCAGTTACTCACCAGTTACTCACCAG
TTACCTCCTTCCTCACTCACTCACACCTCAGTGACACCCACACCC
Right flanking sequence: Indices 129812 -- 130311
CATGCTGACACTAACACCCAAACAGTCCCAGCTCCTCGAAGAGCTGGTGGCCCACACCGTCGCCA
ACTACGACAAGCTCCTGGCCCAGTACCTCCAGCTCCGCCAGGACGTGTACAGGCTCCACGCACTG
GGGCTCAACCCGGACGCGGTGGCCACCACCCGGCGCCAGCTCGACGCCGTGGCGGTGCAGTTCCG
GCACCATGTGCACCTGGTGGTGGCGGTGCTCGACTTGGCGGCCGCCCCCGCCCCCGGGGACGCGT
CCTCCCCCATCGCCGCCCGGCTCGACCAGCTCGAGGCCGAGCGCCAGCGGCTCGAGGCCGAGATC
CGCCACATCAACCACGAGCAAAAACCAATGCTCGCCCAGCTCCATCGCCACATCGACCGGTTCTA
CGCCGAGTTGAAGCCGCCGCGGCCCCAGCGCAAAAAGGGGCCCGTGGACAAGCTGGCGGTGTGCA
AGTTCACCCGCACCGAGCTCGAGGCGGCGGTGCCCACGCACCGGG
Found at i:132416 original size:14 final size:14
Alignment explanation
Indices: 132399--132474 Score: 118
Period size: 14 Copynumber: 5.4 Consensus size: 14
132389 ACCAAATATT
132399 CACCAACAACTCAC
1 CACCAACAACTCAC
132413 CACCAACAACTCAC
1 CACCAACAACTCAC
132427 CACCAACAACTCAC
1 CACCAACAACTCAC
* *
132441 CACCAATAATTCAC
1 CACCAACAACTCAC
132455 CACCAA-ATACTCAC
1 CACCAACA-ACTCAC
132469 CACCAA
1 CACCAA
132475 TCATTCACCG
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
13 1 0.02
14 57 0.98
ACGTcount: A:0.43, C:0.46, G:0.00, T:0.11
Consensus pattern (14 bp):
CACCAACAACTCAC
Left flanking sequence: Indices 131899 -- 132398
CACCTTATTAGACAAACCAAATGGTACCGGTAGTCGGTAGACACCAATCTCACCAGTTGAACGTC
ACTTCCCCAGCTGCTTCTACCACATAAACCTACTTAGCCCACCAACTTTAGTCCCGGTGACCCAA
TGCTTACTGAAACCATTTAACAATCACCGGAGCCTAACAAACAGCGCTCAGCTCTACAAAATCAC
CCATACAATAAACCCGTAAGGCTTCCCGCCACTCACATCCACCTCACCGCTCCGCTCGTCAATGT
CCCTCGAGCCCGCGTGACCCAAGCACGTCCCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGA
GAATGCCACCGTTGTCAACAATCGCCAACTATAAATAGCGCTAAACCGCCGTGATAAATCCACTC
TACGCCCCTACTCTACCCGATGCTACCGCTTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCA
CCACAGTTGACTCAACCGCGGTATAGTTCCAGACCACCAAATATT
Right flanking sequence: Indices 132475 -- 132974
TCATTCACCGAACTGACTCAACTACTCACCCAACTACTCACCCAACTACTCACCCAACTACTCAC
CCAACTTTTCACCGAACTACTCACCACTAACTACGACCACCAAGCAGACAATCCCCGAGTCATTT
TCTCTACTTCTCTCACTCACCTCTAAACACGTACCCACTCTCACCACCTTTCTCGCGCGTGTTCA
CTTTCTCCTTTTCTCCTTCCGTTTCTCCTTCCTCTCTCCTTTCCTACTCTCTTTTCTCTCTCCTT
TCCTTCTCTCTCTTCTCACCTTCCCCTCTCCCTTCCTTCCCTTTTCGCTGCACGAGTGCGACTGA
AAAAAAACCATCGTTCTTCCACCATGATCGGACCCGCCCACACCCCCCACATGGCACGGTTCTTC
TCGAGCTCGGCGGTGGGCATGGCCCGCAAGCTCAAGTTCGGCAACTTGCGCGACGTCCAGTTGCG
CCCGCCCATCGTGCCCACCCACAAGAACTTTGACGTGTCCCCGGA
Found at i:132475 original size:28 final size:28
Alignment explanation
Indices: 132399--132483 Score: 127
Period size: 28 Copynumber: 3.0 Consensus size: 28
132389 ACCAAATATT
* *
132399 CACCAACAACTCACCACCAACAACTCAC
1 CACCAACAACTCACCACCAATAATTCAC
132427 CACCAACAACTCACCACCAATAATTCAC
1 CACCAACAACTCACCACCAATAATTCAC
*
132455 CACCAA-ATACTCACCACCAATCATTCAC
1 CACCAACA-ACTCACCACCAATAATTCAC
132483 C
1 C
132484 GAACTGACTC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 52 0.98
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (28 bp):
CACCAACAACTCACCACCAATAATTCAC
Left flanking sequence: Indices 131899 -- 132398
CACCTTATTAGACAAACCAAATGGTACCGGTAGTCGGTAGACACCAATCTCACCAGTTGAACGTC
ACTTCCCCAGCTGCTTCTACCACATAAACCTACTTAGCCCACCAACTTTAGTCCCGGTGACCCAA
TGCTTACTGAAACCATTTAACAATCACCGGAGCCTAACAAACAGCGCTCAGCTCTACAAAATCAC
CCATACAATAAACCCGTAAGGCTTCCCGCCACTCACATCCACCTCACCGCTCCGCTCGTCAATGT
CCCTCGAGCCCGCGTGACCCAAGCACGTCCCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGA
GAATGCCACCGTTGTCAACAATCGCCAACTATAAATAGCGCTAAACCGCCGTGATAAATCCACTC
TACGCCCCTACTCTACCCGATGCTACCGCTTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCA
CCACAGTTGACTCAACCGCGGTATAGTTCCAGACCACCAAATATT
Right flanking sequence: Indices 132484 -- 132983
GAACTGACTCAACTACTCACCCAACTACTCACCCAACTACTCACCCAACTACTCACCCAACTTTT
CACCGAACTACTCACCACTAACTACGACCACCAAGCAGACAATCCCCGAGTCATTTTCTCTACTT
CTCTCACTCACCTCTAAACACGTACCCACTCTCACCACCTTTCTCGCGCGTGTTCACTTTCTCCT
TTTCTCCTTCCGTTTCTCCTTCCTCTCTCCTTTCCTACTCTCTTTTCTCTCTCCTTTCCTTCTCT
CTCTTCTCACCTTCCCCTCTCCCTTCCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACC
ATCGTTCTTCCACCATGATCGGACCCGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCG
GCGGTGGGCATGGCCCGCAAGCTCAAGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCAT
CGTGCCCACCCACAAGAACTTTGACGTGTCCCCGGACCACCCGCT
Found at i:132482 original size:14 final size:14
Alignment explanation
Indices: 132407--132483 Score: 79
Period size: 14 Copynumber: 5.5 Consensus size: 14
132397 TTCACCAACA
132407 ACTCACCACCAA-C
1 ACTCACCACCAATC
132420 AACTCACCACCAA-C
1 -ACTCACCACCAATC
*
132434 AACTCACCACCAATA
1 -ACTCACCACCAATC
*
132449 ATTCACCACCAAAT-
1 ACTCACCACC-AATC
132463 ACTCACCACCAATC
1 ACTCACCACCAATC
*
132477 ATTCACC
1 ACTCACC
132484 GAACTGACTC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
13 3 0.05
14 50 0.89
15 3 0.05
ACGTcount: A:0.40, C:0.45, G:0.00, T:0.14
Consensus pattern (14 bp):
ACTCACCACCAATC
Left flanking sequence: Indices 131907 -- 132406
TAGACAAACCAAATGGTACCGGTAGTCGGTAGACACCAATCTCACCAGTTGAACGTCACTTCCCC
AGCTGCTTCTACCACATAAACCTACTTAGCCCACCAACTTTAGTCCCGGTGACCCAATGCTTACT
GAAACCATTTAACAATCACCGGAGCCTAACAAACAGCGCTCAGCTCTACAAAATCACCCATACAA
TAAACCCGTAAGGCTTCCCGCCACTCACATCCACCTCACCGCTCCGCTCGTCAATGTCCCTCGAG
CCCGCGTGACCCAAGCACGTCCCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGAGAATGCCA
CCGTTGTCAACAATCGCCAACTATAAATAGCGCTAAACCGCCGTGATAAATCCACTCTACGCCCC
TACTCTACCCGATGCTACCGCTTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCACCACAGTT
GACTCAACCGCGGTATAGTTCCAGACCACCAAATATTCACCAACA
Right flanking sequence: Indices 132484 -- 132983
GAACTGACTCAACTACTCACCCAACTACTCACCCAACTACTCACCCAACTACTCACCCAACTTTT
CACCGAACTACTCACCACTAACTACGACCACCAAGCAGACAATCCCCGAGTCATTTTCTCTACTT
CTCTCACTCACCTCTAAACACGTACCCACTCTCACCACCTTTCTCGCGCGTGTTCACTTTCTCCT
TTTCTCCTTCCGTTTCTCCTTCCTCTCTCCTTTCCTACTCTCTTTTCTCTCTCCTTTCCTTCTCT
CTCTTCTCACCTTCCCCTCTCCCTTCCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACC
ATCGTTCTTCCACCATGATCGGACCCGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCG
GCGGTGGGCATGGCCCGCAAGCTCAAGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCAT
CGTGCCCACCCACAAGAACTTTGACGTGTCCCCGGACCACCCGCT
Found at i:132510 original size:12 final size:12
Alignment explanation
Indices: 132493--132564 Score: 117
Period size: 12 Copynumber: 6.0 Consensus size: 12
132483 CGAACTGACT
132493 CAACTACTCACC
1 CAACTACTCACC
132505 CAACTACTCACC
1 CAACTACTCACC
132517 CAACTACTCACC
1 CAACTACTCACC
132529 CAACTACTCACC
1 CAACTACTCACC
**
132541 CAACTTTTCACC
1 CAACTACTCACC
*
132553 GAACTACTCACC
1 CAACTACTCACC
132565 ACTAACTACG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 55 1.00
ACGTcount: A:0.32, C:0.47, G:0.01, T:0.19
Consensus pattern (12 bp):
CAACTACTCACC
Left flanking sequence: Indices 131993 -- 132492
CTACTTAGCCCACCAACTTTAGTCCCGGTGACCCAATGCTTACTGAAACCATTTAACAATCACCG
GAGCCTAACAAACAGCGCTCAGCTCTACAAAATCACCCATACAATAAACCCGTAAGGCTTCCCGC
CACTCACATCCACCTCACCGCTCCGCTCGTCAATGTCCCTCGAGCCCGCGTGACCCAAGCACGTC
CCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGAGAATGCCACCGTTGTCAACAATCGCCAAC
TATAAATAGCGCTAAACCGCCGTGATAAATCCACTCTACGCCCCTACTCTACCCGATGCTACCGC
TTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCACCACAGTTGACTCAACCGCGGTATAGTTC
CAGACCACCAAATATTCACCAACAACTCACCACCAACAACTCACCACCAACAACTCACCACCAAT
AATTCACCACCAAATACTCACCACCAATCATTCACCGAACTGACT
Right flanking sequence: Indices 132565 -- 133064
ACTAACTACGACCACCAAGCAGACAATCCCCGAGTCATTTTCTCTACTTCTCTCACTCACCTCTA
AACACGTACCCACTCTCACCACCTTTCTCGCGCGTGTTCACTTTCTCCTTTTCTCCTTCCGTTTC
TCCTTCCTCTCTCCTTTCCTACTCTCTTTTCTCTCTCCTTTCCTTCTCTCTCTTCTCACCTTCCC
CTCTCCCTTCCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACCATCGTTCTTCCACCAT
GATCGGACCCGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCGGCGGTGGGCATGGCCC
GCAAGCTCAAGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCATCGTGCCCACCCACAAG
AACTTTGACGTGTCCCCGGACCACCCGCTCTGGGGCTTCTTCCGCGGCCACCAGGCCCTCCGCAC
GGGCGACGACTTGGACATGGACCTGCGCGCGTGGCTGCCCGCGGA
Found at i:132525 original size:24 final size:24
Alignment explanation
Indices: 132493--132573 Score: 117
Period size: 24 Copynumber: 3.3 Consensus size: 24
132483 CGAACTGACT
132493 CAACTACTCACCCAACTACTCACC
1 CAACTACTCACCCAACTACTCACC
132517 CAACTACTCACCCAACTACTCACC
1 CAACTACTCACCCAACTACTCACC
** *
132541 CAACTTTTCACCGAACTACTCACC
1 CAACTACTCACCCAACTACTCACC
132565 ACTAACTAC
1 -C-AACTAC
132574 GACCACCAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
24 45 0.90
25 1 0.02
26 4 0.08
ACGTcount: A:0.33, C:0.46, G:0.01, T:0.20
Consensus pattern (24 bp):
CAACTACTCACCCAACTACTCACC
Left flanking sequence: Indices 131993 -- 132492
CTACTTAGCCCACCAACTTTAGTCCCGGTGACCCAATGCTTACTGAAACCATTTAACAATCACCG
GAGCCTAACAAACAGCGCTCAGCTCTACAAAATCACCCATACAATAAACCCGTAAGGCTTCCCGC
CACTCACATCCACCTCACCGCTCCGCTCGTCAATGTCCCTCGAGCCCGCGTGACCCAAGCACGTC
CCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGAGAATGCCACCGTTGTCAACAATCGCCAAC
TATAAATAGCGCTAAACCGCCGTGATAAATCCACTCTACGCCCCTACTCTACCCGATGCTACCGC
TTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCACCACAGTTGACTCAACCGCGGTATAGTTC
CAGACCACCAAATATTCACCAACAACTCACCACCAACAACTCACCACCAACAACTCACCACCAAT
AATTCACCACCAAATACTCACCACCAATCATTCACCGAACTGACT
Right flanking sequence: Indices 132574 -- 133073
GACCACCAAGCAGACAATCCCCGAGTCATTTTCTCTACTTCTCTCACTCACCTCTAAACACGTAC
CCACTCTCACCACCTTTCTCGCGCGTGTTCACTTTCTCCTTTTCTCCTTCCGTTTCTCCTTCCTC
TCTCCTTTCCTACTCTCTTTTCTCTCTCCTTTCCTTCTCTCTCTTCTCACCTTCCCCTCTCCCTT
CCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACCATCGTTCTTCCACCATGATCGGACC
CGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCGGCGGTGGGCATGGCCCGCAAGCTCA
AGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCATCGTGCCCACCCACAAGAACTTTGAC
GTGTCCCCGGACCACCCGCTCTGGGGCTTCTTCCGCGGCCACCAGGCCCTCCGCACGGGCGACGA
CTTGGACATGGACCTGCGCGCGTGGCTGCCCGCGGAGTTGCGCCG
Found at i:132536 original size:36 final size:37
Alignment explanation
Indices: 132493--132573 Score: 119
Period size: 36 Copynumber: 2.2 Consensus size: 37
132483 CGAACTGACT
132493 CAACTACTCACCCAACTACTCACCCAACTACTCACC-
1 CAACTACTCACCCAACTACTCACCCAACTACTCACCA
** *
132529 CAACTACTCACCCAACTTTTCACCGAACTACTCACCA
1 CAACTACTCACCCAACTACTCACCCAACTACTCACCA
132566 CTAACTAC
1 C-AACTAC
132574 GACCACCAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 33 0.82
37 1 0.03
38 6 0.15
ACGTcount: A:0.33, C:0.46, G:0.01, T:0.20
Consensus pattern (37 bp):
CAACTACTCACCCAACTACTCACCCAACTACTCACCA
Left flanking sequence: Indices 131993 -- 132492
CTACTTAGCCCACCAACTTTAGTCCCGGTGACCCAATGCTTACTGAAACCATTTAACAATCACCG
GAGCCTAACAAACAGCGCTCAGCTCTACAAAATCACCCATACAATAAACCCGTAAGGCTTCCCGC
CACTCACATCCACCTCACCGCTCCGCTCGTCAATGTCCCTCGAGCCCGCGTGACCCAAGCACGTC
CCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGAGAATGCCACCGTTGTCAACAATCGCCAAC
TATAAATAGCGCTAAACCGCCGTGATAAATCCACTCTACGCCCCTACTCTACCCGATGCTACCGC
TTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCACCACAGTTGACTCAACCGCGGTATAGTTC
CAGACCACCAAATATTCACCAACAACTCACCACCAACAACTCACCACCAACAACTCACCACCAAT
AATTCACCACCAAATACTCACCACCAATCATTCACCGAACTGACT
Right flanking sequence: Indices 132574 -- 133073
GACCACCAAGCAGACAATCCCCGAGTCATTTTCTCTACTTCTCTCACTCACCTCTAAACACGTAC
CCACTCTCACCACCTTTCTCGCGCGTGTTCACTTTCTCCTTTTCTCCTTCCGTTTCTCCTTCCTC
TCTCCTTTCCTACTCTCTTTTCTCTCTCCTTTCCTTCTCTCTCTTCTCACCTTCCCCTCTCCCTT
CCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACCATCGTTCTTCCACCATGATCGGACC
CGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCGGCGGTGGGCATGGCCCGCAAGCTCA
AGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCATCGTGCCCACCCACAAGAACTTTGAC
GTGTCCCCGGACCACCCGCTCTGGGGCTTCTTCCGCGGCCACCAGGCCCTCCGCACGGGCGACGA
CTTGGACATGGACCTGCGCGCGTGGCTGCCCGCGGAGTTGCGCCG
Found at i:132725 original size:13 final size:12
Alignment explanation
Indices: 132693--132744 Score: 63
Period size: 12 Copynumber: 4.3 Consensus size: 12
132683 TCCTTCCGTT
132693 TCTCC-TTCCTC
1 TCTCCTTTCCTC
132704 TCTCCTTTCCTAC
1 TCTCCTTTCCT-C
*
132717 TCT-CTTTTCTC
1 TCTCCTTTCCTC
132728 TCTCCTTTCCTTC
1 TCTCCTTTCC-TC
132741 TCTC
1 TCTC
132745 TCTTCTCACC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 9 0.26
12 16 0.46
13 10 0.29
ACGTcount: A:0.02, C:0.46, G:0.00, T:0.52
Consensus pattern (12 bp):
TCTCCTTTCCTC
Left flanking sequence: Indices 132193 -- 132692
TAGGCAAGGCCCTGGGTCTAGGCACTGACGAGAATGCCACCGTTGTCAACAATCGCCAACTATAA
ATAGCGCTAAACCGCCGTGATAAATCCACTCTACGCCCCTACTCTACCCGATGCTACCGCTTGCT
ACCACTTGCTGGTGCTCAACCAGACAGGTCACCACAGTTGACTCAACCGCGGTATAGTTCCAGAC
CACCAAATATTCACCAACAACTCACCACCAACAACTCACCACCAACAACTCACCACCAATAATTC
ACCACCAAATACTCACCACCAATCATTCACCGAACTGACTCAACTACTCACCCAACTACTCACCC
AACTACTCACCCAACTACTCACCCAACTTTTCACCGAACTACTCACCACTAACTACGACCACCAA
GCAGACAATCCCCGAGTCATTTTCTCTACTTCTCTCACTCACCTCTAAACACGTACCCACTCTCA
CCACCTTTCTCGCGCGTGTTCACTTTCTCCTTTTCTCCTTCCGTT
Right flanking sequence: Indices 132745 -- 133244
TCTTCTCACCTTCCCCTCTCCCTTCCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACCA
TCGTTCTTCCACCATGATCGGACCCGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCGG
CGGTGGGCATGGCCCGCAAGCTCAAGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCATC
GTGCCCACCCACAAGAACTTTGACGTGTCCCCGGACCACCCGCTCTGGGGCTTCTTCCGCGGCCA
CCAGGCCCTCCGCACGGGCGACGACTTGGACATGGACCTGCGCGCGTGGCTGCCCGCGGAGTTGC
GCCGCAAGCTGTTCGAGGACTTGCACCGCCTCTGGTACTTGATTCTCCAGGAACGCAACGTGCTC
GCCCGCGAGGTGCGGCTCGGCGAGGCCATCCGCTACCGCAAGACCCAGCAGCACCAGGACCTCGA
CGACCGGCTCCGGTTGACCCAGAAACGCATCAAACAGGTGCTTTT
Found at i:132750 original size:24 final size:24
Alignment explanation
Indices: 132681--132751 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
132671 TTTCTCCTTT
132681 TCTCC-TTCCGTT-TCTC-CTTCCTC
1 TCTCCTTTCC-TTCTCTCTCTT-CTC
* *
132704 TCTCCTTTCCTACTCTCTTTTCTC
1 TCTCCTTTCCTTCTCTCTCTTCTC
132728 TCTCCTTTCCTTCTCTCTCTTCTC
1 TCTCCTTTCCTTCTCTCTCTTCTC
132752 ACCTTCCCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 6 0.15
24 33 0.80
25 2 0.05
ACGTcount: A:0.01, C:0.45, G:0.01, T:0.52
Consensus pattern (24 bp):
TCTCCTTTCCTTCTCTCTCTTCTC
Left flanking sequence: Indices 132181 -- 132680
GCACGTCCCGTTTAGGCAAGGCCCTGGGTCTAGGCACTGACGAGAATGCCACCGTTGTCAACAAT
CGCCAACTATAAATAGCGCTAAACCGCCGTGATAAATCCACTCTACGCCCCTACTCTACCCGATG
CTACCGCTTGCTACCACTTGCTGGTGCTCAACCAGACAGGTCACCACAGTTGACTCAACCGCGGT
ATAGTTCCAGACCACCAAATATTCACCAACAACTCACCACCAACAACTCACCACCAACAACTCAC
CACCAATAATTCACCACCAAATACTCACCACCAATCATTCACCGAACTGACTCAACTACTCACCC
AACTACTCACCCAACTACTCACCCAACTACTCACCCAACTTTTCACCGAACTACTCACCACTAAC
TACGACCACCAAGCAGACAATCCCCGAGTCATTTTCTCTACTTCTCTCACTCACCTCTAAACACG
TACCCACTCTCACCACCTTTCTCGCGCGTGTTCACTTTCTCCTTT
Right flanking sequence: Indices 132752 -- 133251
ACCTTCCCCTCTCCCTTCCTTCCCTTTTCGCTGCACGAGTGCGACTGAAAAAAAACCATCGTTCT
TCCACCATGATCGGACCCGCCCACACCCCCCACATGGCACGGTTCTTCTCGAGCTCGGCGGTGGG
CATGGCCCGCAAGCTCAAGTTCGGCAACTTGCGCGACGTCCAGTTGCGCCCGCCCATCGTGCCCA
CCCACAAGAACTTTGACGTGTCCCCGGACCACCCGCTCTGGGGCTTCTTCCGCGGCCACCAGGCC
CTCCGCACGGGCGACGACTTGGACATGGACCTGCGCGCGTGGCTGCCCGCGGAGTTGCGCCGCAA
GCTGTTCGAGGACTTGCACCGCCTCTGGTACTTGATTCTCCAGGAACGCAACGTGCTCGCCCGCG
AGGTGCGGCTCGGCGAGGCCATCCGCTACCGCAAGACCCAGCAGCACCAGGACCTCGACGACCGG
CTCCGGTTGACCCAGAAACGCATCAAACAGGTGCTTTTGGAGCGC
Found at i:133813 original size:13 final size:13
Alignment explanation
Indices: 133766--133883 Score: 213
Period size: 13 Copynumber: 9.2 Consensus size: 13
133756 GGTAGGGAAG
133766 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133779 GA-CTTAGAGAAA
1 GAGCTTAGAGAAA
*
133791 GAAC-TAGAGAAA
1 GAGCTTAGAGAAA
133803 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133816 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133829 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133842 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133855 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133868 GAGCTTAGAGAAA
1 GAGCTTAGAGAAA
133881 GAG
1 GAG
133884 TGGAGTAGCG
Statistics
Matches: 102, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
12 23 0.23
13 79 0.77
ACGTcount: A:0.47, C:0.08, G:0.31, T:0.14
Consensus pattern (13 bp):
GAGCTTAGAGAAA
Left flanking sequence: Indices 133266 -- 133765
GCGGGTGCAGACGATGGCGGACAAGCAGGGCCAGTACTTGGCGCAGTTTGAGGCCGAGTTCTTGG
CCGCGGACGCTGCCGAGGCGCCCCGGTGGAACGACAAGTTGGTGCGGCTCCAGTACGCGTTCTTT
GGCATCGAGCCCCAGTTGGCGGACTACGACGTCGACCATGACGTCACCGTGGACTTTGTGCGCGG
GTTGCGGTACGTGGCGCGGTTGAAGGCGCAGAAATACAACCAGACGGCGGCGGAGCCCGTGGCGT
TGCCGCTTGCCGAGGCCACCGAGGAGTTGCCGTGGTTGGTGCACCCGAACGCGGCCGACGCTGCC
GCGGAGGTGAAGCAGATCAGAGAAAAGCAGGTGGCGGCGTTGGCCAAGAGCGAGGTGATCCCGTT
CTTGAAGGCGGCGTTGCATGCGAAGATTGAGCAGGGGGAGAAGTAGGGCGGAGGCCACAGCATGG
AACATGTACATAGATAATGAAGAAATAGAGAAGAGGGTAGGGAAG
Right flanking sequence: Indices 133884 -- 134383
TGGAGTAGCGTGGAGGTGGGTGTTGTGAAGCAGTGAGTGTTGAAATTTAGCGTGAAGAGGCTGAG
ACTGAGCGTGGAGGTGGGTGTTAAGGTTTAGCTGAGGTGGGTGTTGAGATTAAGCGTTGGAAAGT
GGTGGGTGCTGAGGTTTGGCTTTGGAGAGATGATGGTTTGAGTGGTTGAGTGGTTGAGTGGTTGA
TTGGTTTGACCTTACATCGTGTAATATACCATTATCAATCTTTATATTAACCTACAGGTGGAGTT
GAAACTCCTTATAATAATTATTAAACAGCTGATTGTATTAATAGAGAGTCATTCTTAAAGTTGGC
ATTAGTTATTTGTACAATTTTATTTAGGTTTCTTCCCTAATTGAGCTTTTGATTTCTTATGGAAT
TTTGCAACCATTATGTTTATGTGCAGGATATGTTGTGGAATATAGCTCTAAGATGAAACTAGGCC
GTTAGAAGAAGGGGCTGTGGAATGTACGTAAAGATGTACGTTTTT
Found at i:134064 original size:8 final size:8
Alignment explanation
Indices: 134051--134084 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
134041 AGATGATGGT
134051 TTGAGTGG
1 TTGAGTGG
134059 TTGAGTGG
1 TTGAGTGG
134067 TTGAGTGG
1 TTGAGTGG
*
134075 TTGATTGG
1 TTGAGTGG
134083 TT
1 TT
134085 TGACCTTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (8 bp):
TTGAGTGG
Left flanking sequence: Indices 133551 -- 134050
GTTGCCGTGGTTGGTGCACCCGAACGCGGCCGACGCTGCCGCGGAGGTGAAGCAGATCAGAGAAA
AGCAGGTGGCGGCGTTGGCCAAGAGCGAGGTGATCCCGTTCTTGAAGGCGGCGTTGCATGCGAAG
ATTGAGCAGGGGGAGAAGTAGGGCGGAGGCCACAGCATGGAACATGTACATAGATAATGAAGAAA
TAGAGAAGAGGGTAGGGAAGGAGCTTAGAGAAAGACTTAGAGAAAGAACTAGAGAAAGAGCTTAG
AGAAAGAGCTTAGAGAAAGAGCTTAGAGAAAGAGCTTAGAGAAAGAGCTTAGAGAAAGAGCTTAG
AGAAAGAGTGGAGTAGCGTGGAGGTGGGTGTTGTGAAGCAGTGAGTGTTGAAATTTAGCGTGAAG
AGGCTGAGACTGAGCGTGGAGGTGGGTGTTAAGGTTTAGCTGAGGTGGGTGTTGAGATTAAGCGT
TGGAAAGTGGTGGGTGCTGAGGTTTGGCTTTGGAGAGATGATGGT
Right flanking sequence: Indices 134085 -- 134584
TGACCTTACATCGTGTAATATACCATTATCAATCTTTATATTAACCTACAGGTGGAGTTGAAACT
CCTTATAATAATTATTAAACAGCTGATTGTATTAATAGAGAGTCATTCTTAAAGTTGGCATTAGT
TATTTGTACAATTTTATTTAGGTTTCTTCCCTAATTGAGCTTTTGATTTCTTATGGAATTTTGCA
ACCATTATGTTTATGTGCAGGATATGTTGTGGAATATAGCTCTAAGATGAAACTAGGCCGTTAGA
AGAAGGGGCTGTGGAATGTACGTAAAGATGTACGTTTTTGGGCGAGGAATGCTTTCGACGATTTA
TCTCCGTGCTTCCTTCGCGAACTCTTAGTTGCTCAACCATCATTTGCTCAACCATTTGCTCAACT
ATCTTTTTTGACTATAGTTAAGACCTAGAGCATGATATAACACACCACACAAATTCTGGACCCAG
TAAACGGTCACAGCAAATGAAAGACCCTGGCAAGACTGTTTCACA
Done.