Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold86
Parameters: 2 7 7 80 10 50 500
Length:  37218

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1156--1208
27
2.0
27
84
0
70
1
33
52
11
1.48
1132--1194
33
1.9
33
86
0
90
3
34
49
12
1.57
2151--2236
9
9.6
9
82
9
104
5
13
36
44
1.69
2233--2279
21
2.2
21
84
0
58
6
34
34
25
1.81
2313--2358
15
2.9
16
81
15
51
13
71
0
15
1.14
2331--2359
15
1.9
15
100
0
58
13
68
0
17
1.20
4361--4483
35
3.8
33
76
14
121
37
15
21
26
1.93
4373--4483
15
6.9
15
75
15
89
38
14
20
26
1.91
8114--8157
11
3.8
11
77
11
52
18
63
0
18
1.31
8105--8157
24
2.2
24
93
0
88
18
62
0
18
1.33
8171--8243
17
4.4
17
72
19
57
16
65
0
17
1.27
8154--8252
43
2.2
44
84
10
123
16
61
0
22
1.34
8171--8252
22
3.9
21
84
9
96
17
63
0
19
1.31
8185--8246
30
2.0
31
87
9
92
17
62
0
19
1.32
8814--8843
12
2.5
12
100
0
60
26
26
40
6
1.81
9854--9960
32
3.1
34
75
14
112
31
0
46
21
1.52
10015--10046
12
2.7
12
100
0
64
37
0
43
18
1.51
10270--10299
14
2.1
15
93
6
53
26
0
56
16
1.40
10659--10704
14
3.3
14
90
0
65
15
47
0
36
1.45
12512--12565
12
4.5
12
92
0
81
9
40
5
44
1.60
12513--12658
12
12.2
12
79
2
78
15
33
6
45
1.71
12601--12676
24
3.2
24
71
0
71
17
38
6
38
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13204--13243
13
3.2
13
89
7
64
20
30
10
40
1.85
13204--13241
12
3.1
12
92
3
58
21
31
7
39
1.82
13347--13378
15
2.1
15
94
0
55
34
25
12
28
1.92
16802--16945
18
7.7
19
72
9
100
27
20
19
31
1.97
16813--16863
19
2.7
19
87
3
68
27
23
17
31
1.97
16858--16894
10
3.7
10
96
0
65
32
21
10
35
1.88
16949--17166
43
5.2
43
79
11
193
33
30
9
26
1.88
16951--17219
43
6.4
42
78
9
160
34
30
8
26
1.86
17027--17149
40
3.0
40
78
4
113
35
30
7
26
1.84
17027--17179
82
1.9
81
84
5
202
35
30
7
26
1.84
19936--19985
22
2.3
22
85
0
64
40
6
44
10
1.63
19948--19997
11
4.5
11
74
0
55
42
6
44
8
1.58
20047--20079
9
3.7
9
91
0
57
3
0
51
45
1.16
20215--20239
13
1.9
13
100
0
50
8
16
28
48
1.74
20814--20883
34
2.1
34
91
2
115
18
14
28
38
1.90
20814--20883
17
4.2
17
87
1
97
18
14
28
38
1.90
21196--21299
12
8.9
12
84
6
133
1
34
0
63
1.06
24311--24383
19
3.8
19
90
0
101
31
4
27
36
1.76
24736--24780
20
2.4
19
88
7
65
22
28
33
15
1.95
24746--24794
20
2.5
20
93
0
80
18
20
38
22
1.93
24936--24987
15
3.5
15
86
5
79
28
34
15
21
1.94
25384--25460
21
3.7
21
96
0
136
10
19
51
18
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25509--25538
15
2.0
15
100
0
60
6
13
66
13
1.43
28692--29171
24
20.0
23
80
10
282
33
33
16
16
1.91
28732--29173
36
12.9
36
78
15
440
33
33
16
16
1.91
28708--29173
60
7.6
60
89
4
530
34
33
16
16
1.91

Tables:   1

The End!