Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold86
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 37218
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Found at i:1186 original size:27 final size:27
Alignment explanation
Indices: 1156--1208 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
1146 TGCCAGTGCC
* *
1156 GGGGCCAGTGCCGGCTCGGGGCTCGCT
1 GGGGCCAGGGCCGGCTCCGGGCTCGCT
* *
1183 GGGGCCGGGGCCGGGTCCGGGCTCGC
1 GGGGCCAGGGCCGGCTCCGGGCTCGC
1209 CACCGGGAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.02, C:0.34, G:0.53, T:0.11
Consensus pattern (27 bp):
GGGGCCAGGGCCGGCTCCGGGCTCGCT
Left flanking sequence: Indices 656 -- 1155
GGGTCAAGCTGTTCCACGGGCACAACGGGGGCGCCATCACCGACTTGGACATCCAGGGCAGCTAC
ATCGCCACCACGGGGCTCTCGTACCGCCCGGCGCAGGGGCGCAAGCTGGTGGCGGAGTACGTGGT
GGACCCCCTCGTGAGTCTTTTCGATCTCCGGATGATGAAGCCGCTTGCCCCGGTGCTGTTCCCCG
CGGGCGCCGCCCATGTGCGGTTCCACCCCAAGCTCCCCAACATTCTCTGTGTGGCGCTGCGGTAC
GGGCAGGTCCAGTTCATCGACATCTACGACCAGAGCCAGGTGTACGTGTACCAGGCGGACGTGCC
CGGCGCGGGCTCCGTCAAGCTGGGGCCCGCCAGCTTTGGCCAGCTCCAGATCCTGGCCAACGGGG
ACTTTTTGTGCTTCACCGACGGGATGGTGGGGGCCAGCGCAGGGCCGGGGCACGCGCCCGCGGGG
TCGGGGCTTGCCAGCGCCGGGGCCGGCTCGGGGCTTGCCAGTGCC
Right flanking sequence: Indices 1209 -- 1708
CACCGGGAGTCCCTTTGACGGGTCGTCGGGGCCGTCGAGCCTCGGGCCCAGCTTCAGCTCGGCCA
TGAACCAGGCGGGCTCACTGGGCTCCACCGGGTCTACCGTGCACTTGTGGAGCCTCTCCGCCCAG
GCCAAGGACTTTGTGCTGTTCCCCCAGCTGTTGGACCAGCCCGACTGGCCCGTGGACCAGCCGCG
CGCGGCCATGGCGCTCGACGACGCCGCGCCGTTGCTGCTGGTGGGCCTCCCGTACTACAAGGACC
TTCTCTTGTCCAACTTTGCCGCCGACTTGGTGTTCACCAAGGAAATGGCCAAGGTGCCCCTCGCC
CCCCCGAGCGACGCGTTGGCAGCCCTGGCCGCGGCCCCGGGGCAGCTCGTGGGGTACGACCGCGC
CAAGTGGGGCCCGGGCCACTTGGCCCACCGCTACCAGCTGCTCCGCGACATCACCCTGGGCCAGT
TGAACCCGCGGTTCCTCCTGGAGCAGGACAAGGACGCCGCCGCCG
Found at i:1190 original size:33 final size:33
Alignment explanation
Indices: 1132--1194 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
1122 CAGCGCCGGG
* *
1132 GCCGGCTCGGGGCTTGCCAGTGCCGGGGCCAGT
1 GCCGGCTCGGGGCTCGCCAGGGCCGGGGCCAGT
**
1165 GCCGGCTCGGGGCTCGCTGGGGCCGGGGCC
1 GCCGGCTCGGGGCTCGCCAGGGCCGGGGCC
1195 GGGTCCGGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.03, C:0.35, G:0.49, T:0.13
Consensus pattern (33 bp):
GCCGGCTCGGGGCTCGCCAGGGCCGGGGCCAGT
Left flanking sequence: Indices 632 -- 1131
TCTTGGACCCCCACACCGGGCGCGGGGTCAAGCTGTTCCACGGGCACAACGGGGGCGCCATCACC
GACTTGGACATCCAGGGCAGCTACATCGCCACCACGGGGCTCTCGTACCGCCCGGCGCAGGGGCG
CAAGCTGGTGGCGGAGTACGTGGTGGACCCCCTCGTGAGTCTTTTCGATCTCCGGATGATGAAGC
CGCTTGCCCCGGTGCTGTTCCCCGCGGGCGCCGCCCATGTGCGGTTCCACCCCAAGCTCCCCAAC
ATTCTCTGTGTGGCGCTGCGGTACGGGCAGGTCCAGTTCATCGACATCTACGACCAGAGCCAGGT
GTACGTGTACCAGGCGGACGTGCCCGGCGCGGGCTCCGTCAAGCTGGGGCCCGCCAGCTTTGGCC
AGCTCCAGATCCTGGCCAACGGGGACTTTTTGTGCTTCACCGACGGGATGGTGGGGGCCAGCGCA
GGGCCGGGGCACGCGCCCGCGGGGTCGGGGCTTGCCAGCGCCGGG
Right flanking sequence: Indices 1195 -- 1694
GGGTCCGGGCTCGCCACCGGGAGTCCCTTTGACGGGTCGTCGGGGCCGTCGAGCCTCGGGCCCAG
CTTCAGCTCGGCCATGAACCAGGCGGGCTCACTGGGCTCCACCGGGTCTACCGTGCACTTGTGGA
GCCTCTCCGCCCAGGCCAAGGACTTTGTGCTGTTCCCCCAGCTGTTGGACCAGCCCGACTGGCCC
GTGGACCAGCCGCGCGCGGCCATGGCGCTCGACGACGCCGCGCCGTTGCTGCTGGTGGGCCTCCC
GTACTACAAGGACCTTCTCTTGTCCAACTTTGCCGCCGACTTGGTGTTCACCAAGGAAATGGCCA
AGGTGCCCCTCGCCCCCCCGAGCGACGCGTTGGCAGCCCTGGCCGCGGCCCCGGGGCAGCTCGTG
GGGTACGACCGCGCCAAGTGGGGCCCGGGCCACTTGGCCCACCGCTACCAGCTGCTCCGCGACAT
CACCCTGGGCCAGTTGAACCCGCGGTTCCTCCTGGAGCAGGACAA
Found at i:2163 original size:9 final size:9
Alignment explanation
Indices: 2151--2236 Score: 104
Period size: 9 Copynumber: 9.6 Consensus size: 9
2141 GTTTACCTGG
*
2151 TGGTGTCTC
1 TGGTGTATC
*
2160 TGGTGTGTC
1 TGGTGTATC
2169 TGGTGTATC
1 TGGTGTATC
2178 TGGTGTATC
1 TGGTGTATC
2187 TGGTGTATC
1 TGGTGTATC
*
2196 TGGTGTTTC
1 TGGTGTATC
2205 TGGTG-ATTC
1 TGGTGTA-TC
2214 TGGTGCT-TC
1 TGGTG-TATC
*
2223 CGGTGTATC
1 TGGTGTATC
2232 TGGTG
1 TGGTG
2237 CTGGCTCTGG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
8 1 0.01
9 66 0.99
ACGTcount: A:0.06, C:0.14, G:0.36, T:0.44
Consensus pattern (9 bp):
TGGTGTATC
Left flanking sequence: Indices 1651 -- 2150
ACCCTGGGCCAGTTGAACCCGCGGTTCCTCCTGGAGCAGGACAAGGACGCCGCCGCCGCCGCCGC
GCGCCACTCGCGCCTCACCCCGGCGCCGGACCCCCTGGCGCCCCTGATCTTTGCGACGAGCCCCG
CGCCGGGCGCGCCCCCGGGGACGGTCCCCAACTGCTACACCCCGCTCCAGATCCACTACCTGAGG
TTTGGGGTGCGGGACTTTGACTTTGACTACTACAACCAGAGCGGGGGCCGGTTCTGTGGGTTGGA
GCTGGGGGTGGACAACGGGTACGCCAACGCGGTGTTGCAGTTGTACCGCCACTGTCCCGTGGTGT
ACAACGGGGTGGTGGCCGGGTTGGCCGAGGAGGACTTGGAGTTGCCGGTGTGGGAGAAGGTGGGT
GGGGACACGAACAATGATGGTGTGGCTGGGAAACAGGCCAATAGTGATGGTGGTGTGTCTGGGAA
TCAGACGAGTCAAAATGATAGTCACAATGATGGTGGTTTACCTGG
Right flanking sequence: Indices 2237 -- 2736
CTGGCTCTGGCCAGTCTGGTGCTGACTCTGCCCACTCCGGTGCCAGTACTGACTCCCACCCCGGT
GCCCCCTCAAACACCTCCCCCTCCACCTCACCCCCCACTCCCTTACCCCCCACTCCCTCGGTGGC
CGACCCCCTCTCCTCCGCCATGGCCCCCTCCGTCTCCACCGCGTCCACCGCCTCCACCGTGCGCT
CGTTCGGCCTGCTGGTGGCCACCGAGACGGGCTACCTCTTCGACATGATGCACAAGGCCCGCGGC
GCCCCCGTGGTCATCGCCAACTGGGCCCAGACGTTCGCGGCCGACGCCGACGCCCGGGCCCGCGG
CCTCGTGCTCGACGACGCCCACGCCGCGGCGGCGCTGCCCGCAGCCCTCGCCGCCGCCGCCGTCA
AGCTCAACAACTTCCTCCTCGCGGCGGTGGCGGGCCCCCACCGGGTGCCGCCGCTGGCCGTGGCC
GTCCCCTACACCGTGCAGTACCGGGGGCAGTGCGGGGGCACCGCC
Found at i:2278 original size:21 final size:21
Alignment explanation
Indices: 2233--2279 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
2223 CGGTGTATCT
* * * *
2233 GGTGCTGGCTCTGGCCAGTCT
1 GGTGCTGACTCTGCCCACTCC
2254 GGTGCTGACTCTGCCCACTCC
1 GGTGCTGACTCTGCCCACTCC
2275 GGTGC
1 GGTGC
2280 CAGTACTGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.06, C:0.34, G:0.34, T:0.26
Consensus pattern (21 bp):
GGTGCTGACTCTGCCCACTCC
Left flanking sequence: Indices 1733 -- 2232
CCCCGGCGCCGGACCCCCTGGCGCCCCTGATCTTTGCGACGAGCCCCGCGCCGGGCGCGCCCCCG
GGGACGGTCCCCAACTGCTACACCCCGCTCCAGATCCACTACCTGAGGTTTGGGGTGCGGGACTT
TGACTTTGACTACTACAACCAGAGCGGGGGCCGGTTCTGTGGGTTGGAGCTGGGGGTGGACAACG
GGTACGCCAACGCGGTGTTGCAGTTGTACCGCCACTGTCCCGTGGTGTACAACGGGGTGGTGGCC
GGGTTGGCCGAGGAGGACTTGGAGTTGCCGGTGTGGGAGAAGGTGGGTGGGGACACGAACAATGA
TGGTGTGGCTGGGAAACAGGCCAATAGTGATGGTGGTGTGTCTGGGAATCAGACGAGTCAAAATG
ATAGTCACAATGATGGTGGTTTACCTGGTGGTGTCTCTGGTGTGTCTGGTGTATCTGGTGTATCT
GGTGTATCTGGTGTTTCTGGTGATTCTGGTGCTTCCGGTGTATCT
Right flanking sequence: Indices 2280 -- 2779
CAGTACTGACTCCCACCCCGGTGCCCCCTCAAACACCTCCCCCTCCACCTCACCCCCCACTCCCT
TACCCCCCACTCCCTCGGTGGCCGACCCCCTCTCCTCCGCCATGGCCCCCTCCGTCTCCACCGCG
TCCACCGCCTCCACCGTGCGCTCGTTCGGCCTGCTGGTGGCCACCGAGACGGGCTACCTCTTCGA
CATGATGCACAAGGCCCGCGGCGCCCCCGTGGTCATCGCCAACTGGGCCCAGACGTTCGCGGCCG
ACGCCGACGCCCGGGCCCGCGGCCTCGTGCTCGACGACGCCCACGCCGCGGCGGCGCTGCCCGCA
GCCCTCGCCGCCGCCGCCGTCAAGCTCAACAACTTCCTCCTCGCGGCGGTGGCGGGCCCCCACCG
GGTGCCGCCGCTGGCCGTGGCCGTCCCCTACACCGTGCAGTACCGGGGGCAGTGCGGGGGCACCG
CCGAGCACCGGGGGCTCCAGCACCTGGTGGACGTGGTGCTGCCGC
Found at i:2342 original size:17 final size:16
Alignment explanation
Indices: 2313--2358 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
2303 CCCCCTCAAA
2313 CACCTCCCC-CTCCACCT
1 CACC-CCCCACTCC-CCT
2330 CACCCCCCACT-CCCT
1 CACCCCCCACTCCCCT
*
2345 TACCCCCCACTCCC
1 CACCCCCCACTCCC
2359 TCGGTGGCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 13 0.50
16 7 0.27
17 6 0.23
ACGTcount: A:0.13, C:0.72, G:0.00, T:0.15
Consensus pattern (16 bp):
CACCCCCCACTCCCCT
Left flanking sequence: Indices 1813 -- 2312
TGCTACACCCCGCTCCAGATCCACTACCTGAGGTTTGGGGTGCGGGACTTTGACTTTGACTACTA
CAACCAGAGCGGGGGCCGGTTCTGTGGGTTGGAGCTGGGGGTGGACAACGGGTACGCCAACGCGG
TGTTGCAGTTGTACCGCCACTGTCCCGTGGTGTACAACGGGGTGGTGGCCGGGTTGGCCGAGGAG
GACTTGGAGTTGCCGGTGTGGGAGAAGGTGGGTGGGGACACGAACAATGATGGTGTGGCTGGGAA
ACAGGCCAATAGTGATGGTGGTGTGTCTGGGAATCAGACGAGTCAAAATGATAGTCACAATGATG
GTGGTTTACCTGGTGGTGTCTCTGGTGTGTCTGGTGTATCTGGTGTATCTGGTGTATCTGGTGTT
TCTGGTGATTCTGGTGCTTCCGGTGTATCTGGTGCTGGCTCTGGCCAGTCTGGTGCTGACTCTGC
CCACTCCGGTGCCAGTACTGACTCCCACCCCGGTGCCCCCTCAAA
Right flanking sequence: Indices 2359 -- 2858
TCGGTGGCCGACCCCCTCTCCTCCGCCATGGCCCCCTCCGTCTCCACCGCGTCCACCGCCTCCAC
CGTGCGCTCGTTCGGCCTGCTGGTGGCCACCGAGACGGGCTACCTCTTCGACATGATGCACAAGG
CCCGCGGCGCCCCCGTGGTCATCGCCAACTGGGCCCAGACGTTCGCGGCCGACGCCGACGCCCGG
GCCCGCGGCCTCGTGCTCGACGACGCCCACGCCGCGGCGGCGCTGCCCGCAGCCCTCGCCGCCGC
CGCCGTCAAGCTCAACAACTTCCTCCTCGCGGCGGTGGCGGGCCCCCACCGGGTGCCGCCGCTGG
CCGTGGCCGTCCCCTACACCGTGCAGTACCGGGGGCAGTGCGGGGGCACCGCCGAGCACCGGGGG
CTCCAGCACCTGGTGGACGTGGTGCTGCCGCCGGTGCCGGTGCCGCCGCCGGCTCCGAACCTGCG
CTACCGCCGCCAGTCCCAGCTCAACTTGGTCAACTACTTGGACCA
Found at i:2349 original size:15 final size:15
Alignment explanation
Indices: 2331--2359 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
2321 CCTCCACCTC
2331 ACCCCCCACTCCCTT
1 ACCCCCCACTCCCTT
2346 ACCCCCCACTCCCT
1 ACCCCCCACTCCCT
2360 CGGTGGCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.69, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCCCCCACTCCCTT
Left flanking sequence: Indices 1831 -- 2330
ATCCACTACCTGAGGTTTGGGGTGCGGGACTTTGACTTTGACTACTACAACCAGAGCGGGGGCCG
GTTCTGTGGGTTGGAGCTGGGGGTGGACAACGGGTACGCCAACGCGGTGTTGCAGTTGTACCGCC
ACTGTCCCGTGGTGTACAACGGGGTGGTGGCCGGGTTGGCCGAGGAGGACTTGGAGTTGCCGGTG
TGGGAGAAGGTGGGTGGGGACACGAACAATGATGGTGTGGCTGGGAAACAGGCCAATAGTGATGG
TGGTGTGTCTGGGAATCAGACGAGTCAAAATGATAGTCACAATGATGGTGGTTTACCTGGTGGTG
TCTCTGGTGTGTCTGGTGTATCTGGTGTATCTGGTGTATCTGGTGTTTCTGGTGATTCTGGTGCT
TCCGGTGTATCTGGTGCTGGCTCTGGCCAGTCTGGTGCTGACTCTGCCCACTCCGGTGCCAGTAC
TGACTCCCACCCCGGTGCCCCCTCAAACACCTCCCCCTCCACCTC
Right flanking sequence: Indices 2360 -- 2859
CGGTGGCCGACCCCCTCTCCTCCGCCATGGCCCCCTCCGTCTCCACCGCGTCCACCGCCTCCACC
GTGCGCTCGTTCGGCCTGCTGGTGGCCACCGAGACGGGCTACCTCTTCGACATGATGCACAAGGC
CCGCGGCGCCCCCGTGGTCATCGCCAACTGGGCCCAGACGTTCGCGGCCGACGCCGACGCCCGGG
CCCGCGGCCTCGTGCTCGACGACGCCCACGCCGCGGCGGCGCTGCCCGCAGCCCTCGCCGCCGCC
GCCGTCAAGCTCAACAACTTCCTCCTCGCGGCGGTGGCGGGCCCCCACCGGGTGCCGCCGCTGGC
CGTGGCCGTCCCCTACACCGTGCAGTACCGGGGGCAGTGCGGGGGCACCGCCGAGCACCGGGGGC
TCCAGCACCTGGTGGACGTGGTGCTGCCGCCGGTGCCGGTGCCGCCGCCGGCTCCGAACCTGCGC
TACCGCCGCCAGTCCCAGCTCAACTTGGTCAACTACTTGGACCAC
Found at i:4453 original size:35 final size:33
Alignment explanation
Indices: 4361--4483 Score: 121
Period size: 35 Copynumber: 3.8 Consensus size: 33
4351 AAAGCATAAT
4361 GCTGCAATCATGAAAT-GCTGCAAATTAAAATG
1 GCTGCAATCATGAAATGGCTGCAAATTAAAATG
* *
4393 GCTGCGAATTC-TGAAATGGCCGCAAATTATGCAATG
1 GCTGC-AA-TCATGAAATGGCTGCAAATTA--AAATG
* *
4429 GTTGCAATCATAAAATGGCTGCAAATT-AAATG
1 GCTGCAATCATGAAATGGCTGCAAATTAAAATG
* *
4461 GCTGCAA--ATTAAATGGTTGCAAA
1 GCTGCAATCATGAAATGGCTGCAAA
4484 ATCATGCACG
Statistics
Matches: 76, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
30 14 0.18
32 15 0.20
33 8 0.11
34 14 0.18
35 17 0.22
36 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (33 bp):
GCTGCAATCATGAAATGGCTGCAAATTAAAATG
Left flanking sequence: Indices 3861 -- 4360
CAACTACCTGGGCATCGAACCCGGCGACTTGGACCCGCACCGGCTGGCCAAGGGGTTGGTGACGC
TCGCCACCGCCTACCGCAAGTTGTGGTTGCTCTTGAACCTCGGGTGTGTGTTTGTCGGGCACGGG
TTGTTCAACGACTTCCGGTGTATCAACCTCCAGGTGCCGCCCGCGCAGATCCGCGACACCGCCGA
CTTGTTTTACAAACACGACTTCAAGCGCAAGCTTTCGCTCAAGTTTTTGGCGTACGTGTTGCTCA
ACACCGACGTCCAGATCGGCAACCACGACCTGATCGAGGACGCCCACACCGCGTGGCAGTTGTAC
AAAAAATACCTCGCGCTCGAGCGTGATGGGATGTTTGAGCAGGCGCTCAACCGCATCTACCACGA
GGGCCAGCAGTTGCGGTTCCGGGTGCCCGAGCATAATTAGACGGTAAATAATTAAAAAAAATTGG
AAAAGAATGGTTGGTTGTAAATTATGAGTGGCTGTAAAGCATAAT
Right flanking sequence: Indices 4484 -- 4983
ATCATGCACGAAAACTTCTATTTTGGTGCGATAAAAAATAATGGTCCGAATCTGGTACCGGGAAA
CGTTTGGTAATCGTTTTGGTAGAACTAAAATTAATGGCTGGTTGTTACTGGTACGTCTTTCTGTA
GCTGTTTTGACGAAGAGCTCTCGTCACGTGAATGACGCGTCTACGACTATTTTCACCGTTCAACG
TGTTGACTGTACCAGACCTGTCAATAAACACTAGAACGCGGGCTGTGTGCTAGAATTGTGAACGA
AATGTCTAGTGGAATCGACTCTAATCCCCCGGCCGAGTCGATCGATACCGACGAGTTGGAAAATG
AACTCGACGATCTCTTATACCAACTCGACGGACAGGGTCATTGGAGCTTCACATACAAAATTAAG
GGTCAAACCTCGTCATTCACTTTTGGCAGAGACGACTCCCTCGACTTCTTCAAACAATACCGCTT
CACTTTGTACTTTGATCTCATCGAAGACACCAATCTGCTTGGGTT
Found at i:4461 original size:15 final size:15
Alignment explanation
Indices: 4373--4483 Score: 89
Period size: 15 Copynumber: 6.9 Consensus size: 15
4363 TGCAATCATG
4373 AAAT-GCTGCAAATT
1 AAATGGCTGCAAATT
*
4387 AAAATGGCTGCGAATTCT
1 -AAATGGCTGC-AAAT-T
*
4405 GAAATGGCCGCAAATT
1 -AAATGGCTGCAAATT
* *
4421 ATGCAATGGTTGCAATCATA
1 A---AATGGCTGCAA--ATT
4441 AAATGGCTGCAAATT
1 AAATGGCTGCAAATT
4456 AAATGGCTGCAAATT
1 AAATGGCTGCAAATT
*
4471 AAATGGTTGCAAA
1 AAATGGCTGCAAA
4484 ATCATGCACG
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
15 34 0.44
16 6 0.08
17 16 0.21
18 19 0.24
20 3 0.04
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (15 bp):
AAATGGCTGCAAATT
Left flanking sequence: Indices 3873 -- 4372
CATCGAACCCGGCGACTTGGACCCGCACCGGCTGGCCAAGGGGTTGGTGACGCTCGCCACCGCCT
ACCGCAAGTTGTGGTTGCTCTTGAACCTCGGGTGTGTGTTTGTCGGGCACGGGTTGTTCAACGAC
TTCCGGTGTATCAACCTCCAGGTGCCGCCCGCGCAGATCCGCGACACCGCCGACTTGTTTTACAA
ACACGACTTCAAGCGCAAGCTTTCGCTCAAGTTTTTGGCGTACGTGTTGCTCAACACCGACGTCC
AGATCGGCAACCACGACCTGATCGAGGACGCCCACACCGCGTGGCAGTTGTACAAAAAATACCTC
GCGCTCGAGCGTGATGGGATGTTTGAGCAGGCGCTCAACCGCATCTACCACGAGGGCCAGCAGTT
GCGGTTCCGGGTGCCCGAGCATAATTAGACGGTAAATAATTAAAAAAAATTGGAAAAGAATGGTT
GGTTGTAAATTATGAGTGGCTGTAAAGCATAATGCTGCAATCATG
Right flanking sequence: Indices 4484 -- 4983
ATCATGCACGAAAACTTCTATTTTGGTGCGATAAAAAATAATGGTCCGAATCTGGTACCGGGAAA
CGTTTGGTAATCGTTTTGGTAGAACTAAAATTAATGGCTGGTTGTTACTGGTACGTCTTTCTGTA
GCTGTTTTGACGAAGAGCTCTCGTCACGTGAATGACGCGTCTACGACTATTTTCACCGTTCAACG
TGTTGACTGTACCAGACCTGTCAATAAACACTAGAACGCGGGCTGTGTGCTAGAATTGTGAACGA
AATGTCTAGTGGAATCGACTCTAATCCCCCGGCCGAGTCGATCGATACCGACGAGTTGGAAAATG
AACTCGACGATCTCTTATACCAACTCGACGGACAGGGTCATTGGAGCTTCACATACAAAATTAAG
GGTCAAACCTCGTCATTCACTTTTGGCAGAGACGACTCCCTCGACTTCTTCAAACAATACCGCTT
CACTTTGTACTTTGATCTCATCGAAGACACCAATCTGCTTGGGTT
Found at i:8130 original size:11 final size:11
Alignment explanation
Indices: 8114--8157 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
8104 CACCCACCTT
8114 CCCTACCCACC
1 CCCTACCCACC
8125 CCCTACCCACC
1 CCCTACCCACC
* *
8136 TTCTCTACTCACC
1 --CCCTACCCACC
8149 CCCTACCCA
1 CCCTACCCA
8158 TTCCTTCCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 18 0.67
13 9 0.33
ACGTcount: A:0.18, C:0.64, G:0.00, T:0.18
Consensus pattern (11 bp):
CCCTACCCACC
Left flanking sequence: Indices 7614 -- 8113
CAAAAACAGACTCTCTGAGCGAGAGGTGCAAAAAGTGATTCCGCCCGGGCTCGATCCGGGGACCT
TCTGCGTGTTAAGCAGATGCCATAACCAACTAGACTACAGAACCATTTGTTGAAAAAATTTGTTA
GAATTGGGAGTTGTATTTGTAGACTAATAAATGTTCTATTTTGCCCAATTTTCCCATTTAAACCA
CTTACAATGCTTCTGTAGATGTGTTTCAGTACCTGGGCGTTTTCTCGGCGGTTTTATTCGTCAAA
GTTCTTTTTTTGACATACGTCATCTCACTCAGTGCCCTTCAAGTACCCTAAAGCAGAAGCGTTCC
CACCCTAAACACCGTAGCGGACCACCCTCAACAACACCACAAATAGCCTACTCGCTTCTCACACT
CCTCCCACATCACTACCCACCAGCCAACCCTACAAATTCTCAACAGGCAACCTAAAAGCCTACTC
TCTACACTTCTTCCACCCTAACCCGTAACCCACTCCACCCACCTT
Right flanking sequence: Indices 8158 -- 8657
TTCCTTCCATCTCCCATCCCCCCATCCCCCCTCCATCCCCCCATCCCATCCATCTCATCCCCCCA
TCCCACCCATCCATCCATCCCATCTCCATCTCACCTGCACACTGCCTACCTTTTCCGCGATCGTG
CCATCGCAGGCATCGCGACCACACCAACCATGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAG
AACCAGACCGCCAAGACCGCCCAGGGGGACGTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGA
CGACGCCATGGGCGAGTACGACGACGAAATCATCGACGAGGACGGCGACGAGGAGGAGATCATCG
AGTTGGACGGCAACGACGACGACCAGGACGCCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGAC
ACCCAGGAGGTGTACTTGCCCCACCGGCTGAAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGA
CCCCAGTGTCTACGAGATGTTGCACACCGTCAACATGCCGTGGCC
Found at i:8137 original size:24 final size:24
Alignment explanation
Indices: 8105--8157 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
8095 AACCCACTCC
8105 ACCCACCTTCCCTACCCACCCCCT
1 ACCCACCTTCCCTACCCACCCCCT
* *
8129 ACCCACCTTCTCTACTCACCCCCT
1 ACCCACCTTCCCTACCCACCCCCT
8153 ACCCA
1 ACCCA
8158 TTCCTTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.19, C:0.62, G:0.00, T:0.19
Consensus pattern (24 bp):
ACCCACCTTCCCTACCCACCCCCT
Left flanking sequence: Indices 7605 -- 8104
CCGTGCATGCAAAAACAGACTCTCTGAGCGAGAGGTGCAAAAAGTGATTCCGCCCGGGCTCGATC
CGGGGACCTTCTGCGTGTTAAGCAGATGCCATAACCAACTAGACTACAGAACCATTTGTTGAAAA
AATTTGTTAGAATTGGGAGTTGTATTTGTAGACTAATAAATGTTCTATTTTGCCCAATTTTCCCA
TTTAAACCACTTACAATGCTTCTGTAGATGTGTTTCAGTACCTGGGCGTTTTCTCGGCGGTTTTA
TTCGTCAAAGTTCTTTTTTTGACATACGTCATCTCACTCAGTGCCCTTCAAGTACCCTAAAGCAG
AAGCGTTCCCACCCTAAACACCGTAGCGGACCACCCTCAACAACACCACAAATAGCCTACTCGCT
TCTCACACTCCTCCCACATCACTACCCACCAGCCAACCCTACAAATTCTCAACAGGCAACCTAAA
AGCCTACTCTCTACACTTCTTCCACCCTAACCCGTAACCCACTCC
Right flanking sequence: Indices 8158 -- 8657
TTCCTTCCATCTCCCATCCCCCCATCCCCCCTCCATCCCCCCATCCCATCCATCTCATCCCCCCA
TCCCACCCATCCATCCATCCCATCTCCATCTCACCTGCACACTGCCTACCTTTTCCGCGATCGTG
CCATCGCAGGCATCGCGACCACACCAACCATGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAG
AACCAGACCGCCAAGACCGCCCAGGGGGACGTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGA
CGACGCCATGGGCGAGTACGACGACGAAATCATCGACGAGGACGGCGACGAGGAGGAGATCATCG
AGTTGGACGGCAACGACGACGACCAGGACGCCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGAC
ACCCAGGAGGTGTACTTGCCCCACCGGCTGAAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGA
CCCCAGTGTCTACGAGATGTTGCACACCGTCAACATGCCGTGGCC
Found at i:8209 original size:17 final size:17
Alignment explanation
Indices: 8171--8243 Score: 57
Period size: 17 Copynumber: 4.4 Consensus size: 17
8161 CTTCCATCTC
*
8171 CCATCCCCCCATCCCCCCT
1 CCATCCCCCCAT--CCCAT
8190 CCATCCCCCCATCCCAT
1 CCATCCCCCCATCCCAT
* *
8207 CCAT---CTCATCCC-C
1 CCATCCCCCCATCCCAT
8220 CCATCCCACCCAT-CCAT
1 CCATCCC-CCCATCCCAT
8237 CCATCCC
1 CCATCCC
8244 ATCTCCATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
13 4 0.09
14 7 0.16
16 2 0.05
17 19 0.43
19 12 0.27
ACGTcount: A:0.16, C:0.66, G:0.00, T:0.18
Consensus pattern (17 bp):
CCATCCCCCCATCCCAT
Left flanking sequence: Indices 7671 -- 8170
GGGGACCTTCTGCGTGTTAAGCAGATGCCATAACCAACTAGACTACAGAACCATTTGTTGAAAAA
ATTTGTTAGAATTGGGAGTTGTATTTGTAGACTAATAAATGTTCTATTTTGCCCAATTTTCCCAT
TTAAACCACTTACAATGCTTCTGTAGATGTGTTTCAGTACCTGGGCGTTTTCTCGGCGGTTTTAT
TCGTCAAAGTTCTTTTTTTGACATACGTCATCTCACTCAGTGCCCTTCAAGTACCCTAAAGCAGA
AGCGTTCCCACCCTAAACACCGTAGCGGACCACCCTCAACAACACCACAAATAGCCTACTCGCTT
CTCACACTCCTCCCACATCACTACCCACCAGCCAACCCTACAAATTCTCAACAGGCAACCTAAAA
GCCTACTCTCTACACTTCTTCCACCCTAACCCGTAACCCACTCCACCCACCTTCCCTACCCACCC
CCTACCCACCTTCTCTACTCACCCCCTACCCATTCCTTCCATCTC
Right flanking sequence: Indices 8244 -- 8743
ATCTCCATCTCACCTGCACACTGCCTACCTTTTCCGCGATCGTGCCATCGCAGGCATCGCGACCA
CACCAACCATGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAGAACCAGACCGCCAAGACCGCC
CAGGGGGACGTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGACGACGCCATGGGCGAGTACGA
CGACGAAATCATCGACGAGGACGGCGACGAGGAGGAGATCATCGAGTTGGACGGCAACGACGACG
ACCAGGACGCCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGACACCCAGGAGGTGTACTTGCCC
CACCGGCTGAAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGACCCCAGTGTCTACGAGATGTT
GCACACCGTCAACATGCCGTGGCCGTGCTTGACGGTGGACGTCCTCCCCGACCTGCTTGGCGACG
AGCGCCGCACCTACCCCGCCACCGTGTACTGCGCCACCGCCACCC
Found at i:8212 original size:43 final size:44
Alignment explanation
Indices: 8154--8252 Score: 123
Period size: 43 Copynumber: 2.2 Consensus size: 44
8144 TCACCCCCTA
* *
8154 CCCATTCCTTCCATCTCCCATCCCCCCATCCC-CCC-TCCATCC-C
1 CCCATCCCATCCATCT--CATCCCCCCATCCCACCCATCCATCCAC
*
8197 CCCATCCCATCCATCTCATCCCCCCATCCCACCCATCCATCCAT
1 CCCATCCCATCCATCTCATCCCCCCATCCCACCCATCCATCCAC
8241 CCCATCTCCATC
1 CCCATC-CCATC
8253 TCACCTGCAC
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
41 14 0.29
42 3 0.06
43 21 0.43
44 6 0.12
45 5 0.10
ACGTcount: A:0.16, C:0.62, G:0.00, T:0.22
Consensus pattern (44 bp):
CCCATCCCATCCATCTCATCCCCCCATCCCACCCATCCATCCAC
Left flanking sequence: Indices 7654 -- 8153
CCGCCCGGGCTCGATCCGGGGACCTTCTGCGTGTTAAGCAGATGCCATAACCAACTAGACTACAG
AACCATTTGTTGAAAAAATTTGTTAGAATTGGGAGTTGTATTTGTAGACTAATAAATGTTCTATT
TTGCCCAATTTTCCCATTTAAACCACTTACAATGCTTCTGTAGATGTGTTTCAGTACCTGGGCGT
TTTCTCGGCGGTTTTATTCGTCAAAGTTCTTTTTTTGACATACGTCATCTCACTCAGTGCCCTTC
AAGTACCCTAAAGCAGAAGCGTTCCCACCCTAAACACCGTAGCGGACCACCCTCAACAACACCAC
AAATAGCCTACTCGCTTCTCACACTCCTCCCACATCACTACCCACCAGCCAACCCTACAAATTCT
CAACAGGCAACCTAAAAGCCTACTCTCTACACTTCTTCCACCCTAACCCGTAACCCACTCCACCC
ACCTTCCCTACCCACCCCCTACCCACCTTCTCTACTCACCCCCTA
Right flanking sequence: Indices 8253 -- 8752
TCACCTGCACACTGCCTACCTTTTCCGCGATCGTGCCATCGCAGGCATCGCGACCACACCAACCA
TGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAGAACCAGACCGCCAAGACCGCCCAGGGGGAC
GTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGACGACGCCATGGGCGAGTACGACGACGAAAT
CATCGACGAGGACGGCGACGAGGAGGAGATCATCGAGTTGGACGGCAACGACGACGACCAGGACG
CCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGACACCCAGGAGGTGTACTTGCCCCACCGGCTG
AAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGACCCCAGTGTCTACGAGATGTTGCACACCGT
CAACATGCCGTGGCCGTGCTTGACGGTGGACGTCCTCCCCGACCTGCTTGGCGACGAGCGCCGCA
CCTACCCCGCCACCGTGTACTGCGCCACCGCCACCCAGGCCGCCA
Found at i:8219 original size:22 final size:21
Alignment explanation
Indices: 8171--8252 Score: 96
Period size: 22 Copynumber: 3.9 Consensus size: 21
8161 CTTCCATCTC
*
8171 CCATCCCCCCATCCC--CCCT
1 CCATCCCCCCATCCCATCCAT
8190 CCATCCCCCCATCCCATCCAT
1 CCATCCCCCCATCCCATCCAT
*
8211 CTCATCCCCCCATCCCACCCAT
1 C-CATCCCCCCATCCCATCCAT
*
8233 CCATCCATCCCATCTCCATC
1 CCATCC-CCCCATC-CCATC
8253 TCACCTGCAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
19 15 0.28
21 9 0.17
22 26 0.48
23 4 0.07
ACGTcount: A:0.17, C:0.63, G:0.00, T:0.20
Consensus pattern (21 bp):
CCATCCCCCCATCCCATCCAT
Left flanking sequence: Indices 7671 -- 8170
GGGGACCTTCTGCGTGTTAAGCAGATGCCATAACCAACTAGACTACAGAACCATTTGTTGAAAAA
ATTTGTTAGAATTGGGAGTTGTATTTGTAGACTAATAAATGTTCTATTTTGCCCAATTTTCCCAT
TTAAACCACTTACAATGCTTCTGTAGATGTGTTTCAGTACCTGGGCGTTTTCTCGGCGGTTTTAT
TCGTCAAAGTTCTTTTTTTGACATACGTCATCTCACTCAGTGCCCTTCAAGTACCCTAAAGCAGA
AGCGTTCCCACCCTAAACACCGTAGCGGACCACCCTCAACAACACCACAAATAGCCTACTCGCTT
CTCACACTCCTCCCACATCACTACCCACCAGCCAACCCTACAAATTCTCAACAGGCAACCTAAAA
GCCTACTCTCTACACTTCTTCCACCCTAACCCGTAACCCACTCCACCCACCTTCCCTACCCACCC
CCTACCCACCTTCTCTACTCACCCCCTACCCATTCCTTCCATCTC
Right flanking sequence: Indices 8253 -- 8752
TCACCTGCACACTGCCTACCTTTTCCGCGATCGTGCCATCGCAGGCATCGCGACCACACCAACCA
TGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAGAACCAGACCGCCAAGACCGCCCAGGGGGAC
GTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGACGACGCCATGGGCGAGTACGACGACGAAAT
CATCGACGAGGACGGCGACGAGGAGGAGATCATCGAGTTGGACGGCAACGACGACGACCAGGACG
CCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGACACCCAGGAGGTGTACTTGCCCCACCGGCTG
AAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGACCCCAGTGTCTACGAGATGTTGCACACCGT
CAACATGCCGTGGCCGTGCTTGACGGTGGACGTCCTCCCCGACCTGCTTGGCGACGAGCGCCGCA
CCTACCCCGCCACCGTGTACTGCGCCACCGCCACCCAGGCCGCCA
Found at i:8226 original size:30 final size:31
Alignment explanation
Indices: 8185--8246 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 31
8175 CCCCCCATCC
*
8185 CCCCTCCATCCC-CCCATCCCATCCATCTCAT
1 CCCCTCCATCCCACCCAT-CCATCCATCCCAT
8216 CCCC-CCATCCCACCCATCCATCCATCCCAT
1 CCCCTCCATCCCACCCATCCATCCATCCCAT
8246 C
1 C
8247 TCCATCTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.18, C:0.63, G:0.00, T:0.19
Consensus pattern (31 bp):
CCCCTCCATCCCACCCATCCATCCATCCCAT
Left flanking sequence: Indices 7685 -- 8184
TGTTAAGCAGATGCCATAACCAACTAGACTACAGAACCATTTGTTGAAAAAATTTGTTAGAATTG
GGAGTTGTATTTGTAGACTAATAAATGTTCTATTTTGCCCAATTTTCCCATTTAAACCACTTACA
ATGCTTCTGTAGATGTGTTTCAGTACCTGGGCGTTTTCTCGGCGGTTTTATTCGTCAAAGTTCTT
TTTTTGACATACGTCATCTCACTCAGTGCCCTTCAAGTACCCTAAAGCAGAAGCGTTCCCACCCT
AAACACCGTAGCGGACCACCCTCAACAACACCACAAATAGCCTACTCGCTTCTCACACTCCTCCC
ACATCACTACCCACCAGCCAACCCTACAAATTCTCAACAGGCAACCTAAAAGCCTACTCTCTACA
CTTCTTCCACCCTAACCCGTAACCCACTCCACCCACCTTCCCTACCCACCCCCTACCCACCTTCT
CTACTCACCCCCTACCCATTCCTTCCATCTCCCATCCCCCCATCC
Right flanking sequence: Indices 8247 -- 8746
TCCATCTCACCTGCACACTGCCTACCTTTTCCGCGATCGTGCCATCGCAGGCATCGCGACCACAC
CAACCATGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAGAACCAGACCGCCAAGACCGCCCAG
GGGGACGTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGACGACGCCATGGGCGAGTACGACGA
CGAAATCATCGACGAGGACGGCGACGAGGAGGAGATCATCGAGTTGGACGGCAACGACGACGACC
AGGACGCCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGACACCCAGGAGGTGTACTTGCCCCAC
CGGCTGAAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGACCCCAGTGTCTACGAGATGTTGCA
CACCGTCAACATGCCGTGGCCGTGCTTGACGGTGGACGTCCTCCCCGACCTGCTTGGCGACGAGC
GCCGCACCTACCCCGCCACCGTGTACTGCGCCACCGCCACCCAGG
Found at i:8831 original size:12 final size:12
Alignment explanation
Indices: 8814--8843 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
8804 CGCTTGAGCG
8814 CGACGAGCTGGA
1 CGACGAGCTGGA
8826 CGACGAGCTGGA
1 CGACGAGCTGGA
8838 CGACGA
1 CGACGA
8844 CGACGACTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.40, T:0.07
Consensus pattern (12 bp):
CGACGAGCTGGA
Left flanking sequence: Indices 8314 -- 8813
ACCATGAAGAGACTGGCGGAAGACGAGCTCAGCGGGCAGAACCAGACCGCCAAGACCGCCCAGGG
GGACGTGCCGCGCGCGCAGGCCACCGCGGGCGAGTTTGACGACGCCATGGGCGAGTACGACGACG
AAATCATCGACGAGGACGGCGACGAGGAGGAGATCATCGAGTTGGACGGCAACGACGACGACCAG
GACGCCGCGGCGGTGATGGAGGCCGACGCGGCCCAGGACACCCAGGAGGTGTACTTGCCCCACCG
GCTGAAACCGCTTGGCCCCGACGAGGTCCTCCAGGCCGACCCCAGTGTCTACGAGATGTTGCACA
CCGTCAACATGCCGTGGCCGTGCTTGACGGTGGACGTCCTCCCCGACCTGCTTGGCGACGAGCGC
CGCACCTACCCCGCCACCGTGTACTGCGCCACCGCCACCCAGGCCGCCAAGGCCAAGGACAACGA
GTTGCTCATGGTCAAGTTGTCCAAGCTCGCCAAGACGCTTGAGCG
Right flanking sequence: Indices 8844 -- 9343
CGACGACTACGACCCCATTTTGGACTCGGAGGCGGTGCCGCTCCGGGCCACCACCAACCGGTTGC
GGGTGCTGCCGCACGCGGCCCACACGGGCGAGTACTTGACCGCCACCATGCTGGAGCTGGGCGAG
GTGTTGATCTACGACTTGGCGCCCCAGATGAAGGCGTTCGACACTCCCGGGTATCTCGTGCCCAA
GCCCGCCCGTCGTCCTGTACACACCGTGCGTTGTCACGGCAACGTCGAGGGGTACGGGCTCGACT
GGCTGCCGCTCGTGACCACGGGAGCGCTCCTCTCGGGCGACTGCAGCGGGCGCACCTACTACACC
CAGCGCGCGAGCTCGGGGTGGGTGCTGGACAAGACGCCCTTCGTGGCGGGCGACGGCAACCAGGC
GCTGATCGAGGACATCCAGTGGTCGCAGCTGGAGACGACGGTGTTTGCCACTGCGGGGTGTGATG
GTTTTGTCCGCATTTGGGACACGCGTCTGAAGAAACACGCGCCTG
Found at i:9906 original size:32 final size:34
Alignment explanation
Indices: 9854--9960 Score: 112
Period size: 32 Copynumber: 3.1 Consensus size: 34
9844 GTGGGTGGGG
*
9854 GTGAAAGAATAGAAGAAGTGGGTGAGGGGGTAGGT
1 GTGAAGGAATAG-AGAAGTGGGTGAGGGGGTAGGT
* *
9889 GTGAAGGATTA-A-AAGTGGGTGA-GTGGTAAGGT
1 GTGAAGGAATAGAGAAGTGGGTGAGGGGGT-AGGT
* *
9921 GTAAAGGAATAGGAGAAGTGGTTGAGGGGGTTAGGT
1 GTGAAGGAATA-GAGAAGTGGGTGAGGGGG-TAGGT
9957 GTGA
1 GTGA
9961 CTTGGTTTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
31 4 0.07
32 23 0.40
33 1 0.02
34 1 0.02
35 18 0.31
36 10 0.17
37 1 0.02
ACGTcount: A:0.32, C:0.00, G:0.47, T:0.21
Consensus pattern (34 bp):
GTGAAGGAATAGAGAAGTGGGTGAGGGGGTAGGT
Left flanking sequence: Indices 9354 -- 9853
AAAGGCAAGCAACAGCGACGTCAACGTGATCTCGTGGTGCAACAAGATCACCCACTTGTTGGCGT
CCGGGCACGACGACGGCACCTGGGGCGTGTGGGACTTGCGCCACTTTGGCCAGGGCCCGGCTCCG
CTGCCGGTGGCCCACTACGAGTTCCACCAGCTGCCCGTGACCGCCATCCTGTTCAACCCGTTGGA
CGAGTCGGTGGTGGCGGTGCTGTCCGAGGACAACACGGTGACGCTCTGGGACCTTTCCGTGGAGG
CGGACGACGAGGAGATCTCGCAGCAGAAGGCGCAGCTGGCCCAGCTCCGCGACATTCCCCCGCAG
TTGTTGTTTGTCCACTGGCAGAGGGACGTCAAGGACGTGCGGTGGCACCGGCAGATCCCGGGTGC
GTTGGTGCTGACGGGCGGCGAGGGGTTGAACATCTGGAAGACGATTAGTGTATAGCATGGTAATA
GGAATGGAGAGAAAGATTAGAAGAAACTAGGAGAAGTGGGTGGGG
Right flanking sequence: Indices 9961 -- 10460
CTTGGTTTGACGGTTGGTGTATGGGTTTGACTAGGTGGTTGGGAATGTGGGTGTGAATGTGGGAA
AGAATGTGGGAAAGAATGTGGTGTGGTTGTAGGTGTTTCCAGCGTGTGTGAATGTGGGTTATGGG
TGTGGTCGTTGTCAATGTTTGTGAATGTGGGTAAGAATGTGGGTGTGGTCGTTGTTGTCAGAGTG
AGAATGTGGGTGTAATGTGAGTTTGGTTGTTGGTGTTTTCAGAGTGTGTGATTGTGGATGGTCGT
TGTTGTGTGTGTGTGTACTACGGACTGGTTGCTAACGTGAGCCCCTGGTTGGAGAGTGGAAGGTG
GAGAGTGGGAAGGTCCGTGGGTGGGATGAGGCTGCCTGCATGGGGAACTATGAGTGGGTTTAGAA
TAGCACTAAATAGTTGAAAAACCAGCCCATTAGGGTGGTTTTGTCTCGCTGAACACAACCGTGCT
CTTGTTTTTCCGGTATCTCGTCTCAAAGAGCGCCACGTTGGGACC
Found at i:10030 original size:12 final size:12
Alignment explanation
Indices: 10015--10046 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
10005 ATGTGGGTGT
10015 GAATGTGGGAAA
1 GAATGTGGGAAA
10027 GAATGTGGGAAA
1 GAATGTGGGAAA
10039 GAATGTGG
1 GAATGTGG
10047 TGTGGTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.44, T:0.19
Consensus pattern (12 bp):
GAATGTGGGAAA
Left flanking sequence: Indices 9515 -- 10014
TGCCCGTGACCGCCATCCTGTTCAACCCGTTGGACGAGTCGGTGGTGGCGGTGCTGTCCGAGGAC
AACACGGTGACGCTCTGGGACCTTTCCGTGGAGGCGGACGACGAGGAGATCTCGCAGCAGAAGGC
GCAGCTGGCCCAGCTCCGCGACATTCCCCCGCAGTTGTTGTTTGTCCACTGGCAGAGGGACGTCA
AGGACGTGCGGTGGCACCGGCAGATCCCGGGTGCGTTGGTGCTGACGGGCGGCGAGGGGTTGAAC
ATCTGGAAGACGATTAGTGTATAGCATGGTAATAGGAATGGAGAGAAAGATTAGAAGAAACTAGG
AGAAGTGGGTGGGGGTGAAAGAATAGAAGAAGTGGGTGAGGGGGTAGGTGTGAAGGATTAAAAGT
GGGTGAGTGGTAAGGTGTAAAGGAATAGGAGAAGTGGTTGAGGGGGTTAGGTGTGACTTGGTTTG
ACGGTTGGTGTATGGGTTTGACTAGGTGGTTGGGAATGTGGGTGT
Right flanking sequence: Indices 10047 -- 10546
TGTGGTTGTAGGTGTTTCCAGCGTGTGTGAATGTGGGTTATGGGTGTGGTCGTTGTCAATGTTTG
TGAATGTGGGTAAGAATGTGGGTGTGGTCGTTGTTGTCAGAGTGAGAATGTGGGTGTAATGTGAG
TTTGGTTGTTGGTGTTTTCAGAGTGTGTGATTGTGGATGGTCGTTGTTGTGTGTGTGTGTACTAC
GGACTGGTTGCTAACGTGAGCCCCTGGTTGGAGAGTGGAAGGTGGAGAGTGGGAAGGTCCGTGGG
TGGGATGAGGCTGCCTGCATGGGGAACTATGAGTGGGTTTAGAATAGCACTAAATAGTTGAAAAA
CCAGCCCATTAGGGTGGTTTTGTCTCGCTGAACACAACCGTGCTCTTGTTTTTCCGGTATCTCGT
CTCAAAGAGCGCCACGTTGGGACCATCTTTCGCTGATGTCTGCTGCCTGCATACAGCTCAGGGGT
CCAGACACTAGCGTGATTGACGAGCTGGCAATAGCCCAGGCACTA
Found at i:10289 original size:14 final size:15
Alignment explanation
Indices: 10270--10299 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
10260 AGCCCCTGGT
10270 TGGAGAGT-GGAAGG
1 TGGAGAGTGGGAAGG
10284 TGGAGAGTGGGAAGG
1 TGGAGAGTGGGAAGG
10299 T
1 T
10300 CCGTGGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.27, C:0.00, G:0.57, T:0.17
Consensus pattern (15 bp):
TGGAGAGTGGGAAGG
Left flanking sequence: Indices 9770 -- 10269
TGAACATCTGGAAGACGATTAGTGTATAGCATGGTAATAGGAATGGAGAGAAAGATTAGAAGAAA
CTAGGAGAAGTGGGTGGGGGTGAAAGAATAGAAGAAGTGGGTGAGGGGGTAGGTGTGAAGGATTA
AAAGTGGGTGAGTGGTAAGGTGTAAAGGAATAGGAGAAGTGGTTGAGGGGGTTAGGTGTGACTTG
GTTTGACGGTTGGTGTATGGGTTTGACTAGGTGGTTGGGAATGTGGGTGTGAATGTGGGAAAGAA
TGTGGGAAAGAATGTGGTGTGGTTGTAGGTGTTTCCAGCGTGTGTGAATGTGGGTTATGGGTGTG
GTCGTTGTCAATGTTTGTGAATGTGGGTAAGAATGTGGGTGTGGTCGTTGTTGTCAGAGTGAGAA
TGTGGGTGTAATGTGAGTTTGGTTGTTGGTGTTTTCAGAGTGTGTGATTGTGGATGGTCGTTGTT
GTGTGTGTGTGTACTACGGACTGGTTGCTAACGTGAGCCCCTGGT
Right flanking sequence: Indices 10300 -- 10799
CCGTGGGTGGGATGAGGCTGCCTGCATGGGGAACTATGAGTGGGTTTAGAATAGCACTAAATAGT
TGAAAAACCAGCCCATTAGGGTGGTTTTGTCTCGCTGAACACAACCGTGCTCTTGTTTTTCCGGT
ATCTCGTCTCAAAGAGCGCCACGTTGGGACCATCTTTCGCTGATGTCTGCTGCCTGCATACAGCT
CAGGGGTCCAGACACTAGCGTGATTGACGAGCTGGCAATAGCCCAGGCACTATTGGACGAGACAG
GGCGACACGTAGAGAACCGGACCAAACCCGGAAAGTCGACCAGTTGGCTGTTCTGCGTCTCTGTA
CCAAAAACCGTAAACATACTCGATGAACATCAACCTTCTCCACTTCTTCTTCTCCACTCCAACTT
CTCCACTCCAACTTCCAACAACCCCTGCCCGTTGTCAACTCACTAATTGGTTGCGAATTCACCGT
ATTAGACCAACGTTCACCAGCCTCTTCAATTAATGCCACAATCGC
Found at i:10678 original size:14 final size:14
Alignment explanation
Indices: 10659--10704 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
10649 GAACATCAAC
* **
10659 CTTCTCCACTTCTT
1 CTTCTCCACTCCAA
10673 CTTCTCCACTCCAA
1 CTTCTCCACTCCAA
10687 CTTCTCCACTCCAA
1 CTTCTCCACTCCAA
10701 CTTC
1 CTTC
10705 CAACAACCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.15, C:0.48, G:0.00, T:0.37
Consensus pattern (14 bp):
CTTCTCCACTCCAA
Left flanking sequence: Indices 10159 -- 10658
ATGTGGGTGTAATGTGAGTTTGGTTGTTGGTGTTTTCAGAGTGTGTGATTGTGGATGGTCGTTGT
TGTGTGTGTGTGTACTACGGACTGGTTGCTAACGTGAGCCCCTGGTTGGAGAGTGGAAGGTGGAG
AGTGGGAAGGTCCGTGGGTGGGATGAGGCTGCCTGCATGGGGAACTATGAGTGGGTTTAGAATAG
CACTAAATAGTTGAAAAACCAGCCCATTAGGGTGGTTTTGTCTCGCTGAACACAACCGTGCTCTT
GTTTTTCCGGTATCTCGTCTCAAAGAGCGCCACGTTGGGACCATCTTTCGCTGATGTCTGCTGCC
TGCATACAGCTCAGGGGTCCAGACACTAGCGTGATTGACGAGCTGGCAATAGCCCAGGCACTATT
GGACGAGACAGGGCGACACGTAGAGAACCGGACCAAACCCGGAAAGTCGACCAGTTGGCTGTTCT
GCGTCTCTGTACCAAAAACCGTAAACATACTCGATGAACATCAAC
Right flanking sequence: Indices 10705 -- 11204
CAACAACCCCTGCCCGTTGTCAACTCACTAATTGGTTGCGAATTCACCGTATTAGACCAACGTTC
ACCAGCCTCTTCAATTAATGCCACAATCGCGGGAAACGCCCAAATAAGGTTTGTTCCTGATCTCT
CCCATTGTTCCCTGCCCAAGCGCCTTTGTCCCGATTCTCTCCCTCGTGTAGCGATAATAAACCCG
GTGACGACAGTGCATCATTCCAGCCGTGGGGTGACGGTTCGTAATGCTCCCGACGCGTCTACCCC
GTGGGTAAAAACCGGGAAAAGCGGGCCCTGGACCACCAAAAACGCGTCCCAGTCGCCCCGGGGCC
CGTCGTAGACCCCGCTCCCGCTTCCCGCGGCCCCAAAACGCCGTCTTGGCGGCCACGACACTATC
TCGTGCAATCGCTCAGGGGCCCTGCATAGCCTGCGGCATTAACTATAAATAGCCCAGCGATCGAC
CACTTCCCCATGGTTGATTACGAGGCGGACCCGTCGTATTTCGCG
Found at i:12570 original size:12 final size:12
Alignment explanation
Indices: 12512--12565 Score: 81
Period size: 12 Copynumber: 4.5 Consensus size: 12
12502 TCTTGGTCTC
*
12512 CTTCTAGTCCTA
1 CTTCTCGTCCTA
12524 CTTCTCGTCCTA
1 CTTCTCGTCCTA
12536 CTTCTCGTCCTA
1 CTTCTCGTCCTA
* *
12548 CTTCTCCTCTTA
1 CTTCTCGTCCTA
12560 CTTCTC
1 CTTCTC
12566 ATCTTTATTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.09, C:0.41, G:0.06, T:0.44
Consensus pattern (12 bp):
CTTCTCGTCCTA
Left flanking sequence: Indices 12012 -- 12511
TCGGACTTTTTCAGCGACGACGAGGAATCCGACCCTAGCCAGCCTGCTGAAAACACCCTCAAGCT
CTCGGCACCGATCTCGTTTTCGGGGAGTCTCCGGAACCCCGATACCGAGCTGGAGATGGCCAGTG
ACGAGAGCAGCATCCCCGTCCACGAGAGCGAGGACCCGTTTGACGACTGCTACCACTCGCAGTGG
TACCAGGACTACGCGGCGGGTTTTGCCGAGGGATACGCCGTAGGACGTGGTCAGCGCCGGGTAGG
CAACGACTGCTGGTTTAAAGACTTCTAGGCCTTTGAGTCTGAACGAGAGCCAGCACCTAATTATC
ACCTACAGTAAAGCATTGAGCTATCTCCATTGCAGTAGCCACACATAGAAAACCCATTAATTGCA
TACCTCCTATCACAATGCCCAGAGAGTTCCCTACTATCTTTTGGCCCTTTTCTTGGCCTCGTTCT
CTTGGCTTTCTCTTGGCTTCATCTGGGGTTCCTTCTCTTGGTCTC
Right flanking sequence: Indices 12566 -- 13065
ATCTTTATTCTCGTTTTAATTCTCGTTTTATTTCTCGTCCTAATTCTTATCCACCTTCACGTCCT
AATTCCCGTCCTAATCCACGTCCTAATTTTTATCCTCCTTCTCGTCTTTCTCGTCCTCCCTCTCC
TCCTCCTTCTTCCTACGCGACCGTTATCTTCATGCAGTACCAAATCTCAAAATAAACAACATGTC
TACCGCCCCAGACTACACTATACACCCGCTGCTCAGCGACACAGAGGCCAAGATCCTCGAGCAGT
ACCGCCTCACCGTGCAATACCTCACCCAGATAGAGGACGAGCTCGACGCACTCATTCTGGGCGAC
TCCCCCATCGAGACGATCCGGGAAAACCTGCGGGCGTTGGAGATGCAGTTGGCGGTGATCCACTC
GCTCTTCCCGTCGTCGGTGTTTGCGGTGTACCAGTCTTCCCAGAACCAGCCGCCTGTTTGAGTCC
AGAGACGTTGAAGTCCAGAGACGGGGGATGGATAACGTCACGTGT
Found at i:12612 original size:12 final size:12
Alignment explanation
Indices: 12513--12658 Score: 78
Period size: 12 Copynumber: 12.2 Consensus size: 12
12503 CTTGGTCTCC
* *
12513 TTCTAGTCCTAC
1 TTCTCGTCCTAA
*
12525 TTCTCGTCCTAC
1 TTCTCGTCCTAA
*
12537 TTCTCGTCCTAC
1 TTCTCGTCCTAA
* * *
12549 TTCTCCTCTTAC
1 TTCTCGTCCTAA
* * *
12561 TTCTCATCTTTA
1 TTCTCGTCCTAA
**
12573 TTCTCGTTTTAA
1 TTCTCGTCCTAA
** *
12585 TTCTCGTTTTAT
1 TTCTCGTCCTAA
12597 TTCTCGTCCTAA
1 TTCTCGTCCTAA
** *
12609 TTCTTATCC-ACC
1 TTCTCGTCCTA-A
*
12621 TTCACGTCCTAA
1 TTCTCGTCCTAA
*
12633 TTCCCGTCCTAA
1 TTCTCGTCCTAA
* *
12645 TCCACGTCCTAA
1 TTCTCGTCCTAA
12657 TT
1 TT
12659 TTTATCCTCC
Statistics
Matches: 108, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
11 1 0.01
12 106 0.98
13 1 0.01
ACGTcount: A:0.15, C:0.34, G:0.06, T:0.45
Consensus pattern (12 bp):
TTCTCGTCCTAA
Left flanking sequence: Indices 12013 -- 12512
CGGACTTTTTCAGCGACGACGAGGAATCCGACCCTAGCCAGCCTGCTGAAAACACCCTCAAGCTC
TCGGCACCGATCTCGTTTTCGGGGAGTCTCCGGAACCCCGATACCGAGCTGGAGATGGCCAGTGA
CGAGAGCAGCATCCCCGTCCACGAGAGCGAGGACCCGTTTGACGACTGCTACCACTCGCAGTGGT
ACCAGGACTACGCGGCGGGTTTTGCCGAGGGATACGCCGTAGGACGTGGTCAGCGCCGGGTAGGC
AACGACTGCTGGTTTAAAGACTTCTAGGCCTTTGAGTCTGAACGAGAGCCAGCACCTAATTATCA
CCTACAGTAAAGCATTGAGCTATCTCCATTGCAGTAGCCACACATAGAAAACCCATTAATTGCAT
ACCTCCTATCACAATGCCCAGAGAGTTCCCTACTATCTTTTGGCCCTTTTCTTGGCCTCGTTCTC
TTGGCTTTCTCTTGGCTTCATCTGGGGTTCCTTCTCTTGGTCTCC
Right flanking sequence: Indices 12659 -- 13158
TTTATCCTCCTTCTCGTCTTTCTCGTCCTCCCTCTCCTCCTCCTTCTTCCTACGCGACCGTTATC
TTCATGCAGTACCAAATCTCAAAATAAACAACATGTCTACCGCCCCAGACTACACTATACACCCG
CTGCTCAGCGACACAGAGGCCAAGATCCTCGAGCAGTACCGCCTCACCGTGCAATACCTCACCCA
GATAGAGGACGAGCTCGACGCACTCATTCTGGGCGACTCCCCCATCGAGACGATCCGGGAAAACC
TGCGGGCGTTGGAGATGCAGTTGGCGGTGATCCACTCGCTCTTCCCGTCGTCGGTGTTTGCGGTG
TACCAGTCTTCCCAGAACCAGCCGCCTGTTTGAGTCCAGAGACGTTGAAGTCCAGAGACGGGGGA
TGGATAACGTCACGTGTGTTCGATCGCGTGCTCAGAACCACGTGCCAAGATATGATATGAGATGG
TCACAAGATAAGCTGAGTGCTTTCTGCAGACGCCTTGAGTAATCG
Found at i:12676 original size:24 final size:24
Alignment explanation
Indices: 12601--12676 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 24
12591 TTTTATTTCT
*
12601 CGTCCTAATTCTTATCCACCTTCA
1 CGTCCTAATTCTTATCCTCCTTCA
*** ** *
12625 CGTCCTAATTCCCGTCCTAATCCA
1 CGTCCTAATTCTTATCCTCCTTCA
* *
12649 CGTCCTAATTTTTATCCTCCTTCT
1 CGTCCTAATTCTTATCCTCCTTCA
12673 CGTC
1 CGTC
12677 TTTCTCGTCC
Statistics
Matches: 37, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.07, T:0.38
Consensus pattern (24 bp):
CGTCCTAATTCTTATCCTCCTTCA
Left flanking sequence: Indices 12101 -- 12600
GAGTCTCCGGAACCCCGATACCGAGCTGGAGATGGCCAGTGACGAGAGCAGCATCCCCGTCCACG
AGAGCGAGGACCCGTTTGACGACTGCTACCACTCGCAGTGGTACCAGGACTACGCGGCGGGTTTT
GCCGAGGGATACGCCGTAGGACGTGGTCAGCGCCGGGTAGGCAACGACTGCTGGTTTAAAGACTT
CTAGGCCTTTGAGTCTGAACGAGAGCCAGCACCTAATTATCACCTACAGTAAAGCATTGAGCTAT
CTCCATTGCAGTAGCCACACATAGAAAACCCATTAATTGCATACCTCCTATCACAATGCCCAGAG
AGTTCCCTACTATCTTTTGGCCCTTTTCTTGGCCTCGTTCTCTTGGCTTTCTCTTGGCTTCATCT
GGGGTTCCTTCTCTTGGTCTCCTTCTAGTCCTACTTCTCGTCCTACTTCTCGTCCTACTTCTCCT
CTTACTTCTCATCTTTATTCTCGTTTTAATTCTCGTTTTATTTCT
Right flanking sequence: Indices 12677 -- 13176
TTTCTCGTCCTCCCTCTCCTCCTCCTTCTTCCTACGCGACCGTTATCTTCATGCAGTACCAAATC
TCAAAATAAACAACATGTCTACCGCCCCAGACTACACTATACACCCGCTGCTCAGCGACACAGAG
GCCAAGATCCTCGAGCAGTACCGCCTCACCGTGCAATACCTCACCCAGATAGAGGACGAGCTCGA
CGCACTCATTCTGGGCGACTCCCCCATCGAGACGATCCGGGAAAACCTGCGGGCGTTGGAGATGC
AGTTGGCGGTGATCCACTCGCTCTTCCCGTCGTCGGTGTTTGCGGTGTACCAGTCTTCCCAGAAC
CAGCCGCCTGTTTGAGTCCAGAGACGTTGAAGTCCAGAGACGGGGGATGGATAACGTCACGTGTG
TTCGATCGCGTGCTCAGAACCACGTGCCAAGATATGATATGAGATGGTCACAAGATAAGCTGAGT
GCTTTCTGCAGACGCCTTGAGTAATCGGGAGTCGAGAGGTTCATC
Found at i:13222 original size:13 final size:13
Alignment explanation
Indices: 13204--13243 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
13194 CTAACACGCA
13204 TGTAAACCCCTTT
1 TGTAAACCCCTTT
13217 TGTAAACCCC-TT
1 TGTAAACCCCTTT
*
13229 TGTTAACCCCTTT
1 TGTAAACCCCTTT
13242 TG
1 TG
13244 CATCTTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.40
Consensus pattern (13 bp):
TGTAAACCCCTTT
Left flanking sequence: Indices 12704 -- 13203
CTTCCTACGCGACCGTTATCTTCATGCAGTACCAAATCTCAAAATAAACAACATGTCTACCGCCC
CAGACTACACTATACACCCGCTGCTCAGCGACACAGAGGCCAAGATCCTCGAGCAGTACCGCCTC
ACCGTGCAATACCTCACCCAGATAGAGGACGAGCTCGACGCACTCATTCTGGGCGACTCCCCCAT
CGAGACGATCCGGGAAAACCTGCGGGCGTTGGAGATGCAGTTGGCGGTGATCCACTCGCTCTTCC
CGTCGTCGGTGTTTGCGGTGTACCAGTCTTCCCAGAACCAGCCGCCTGTTTGAGTCCAGAGACGT
TGAAGTCCAGAGACGGGGGATGGATAACGTCACGTGTGTTCGATCGCGTGCTCAGAACCACGTGC
CAAGATATGATATGAGATGGTCACAAGATAAGCTGAGTGCTTTCTGCAGACGCCTTGAGTAATCG
GGAGTCGAGAGGTTCATCTACTCGGGGTAAGCGTCCTAACACGCA
Right flanking sequence: Indices 13244 -- 13743
CATCTTTCACCGCTAGTCCACTACTAGTCTTCCACGAGCTCTTCCCTGATTACCATTATCACAGG
CTCCGGGAGTCAGCCGTTCCATCCACATGACAGACACCAATCACGCTGACTTTAATCACGCTGAC
ATTAACCCCGTGCCAAGCAAACCAAGAATTCGCCCGATGAACCAAGAAAACAGCAAGATTTAGTC
TGTCAATGCACGTAATATACCGATATGTACTATATTTAGATGAATTTGTGCGCCGCCTCGGCCCA
CCTTACAGCGGTTGCGTCTGACAATTTCACGTTTAGAGTCAGGAACGCCCCAGAGCAATCATGTG
CTCGCTGTATGGTCCATCCTCATCGCTCTGTTATCGCGTTCTCCACACCGTAGATCTCTGACTAC
ACGAGCCACAAAACCGCTCAAACGAGCCAGTTCGTATTCCGTGATTGTTCTCGTGTTCGCTCCTC
TGCCGTCGTGTTTTCGCCAGGCTCGTCTACCGGTTGTCTGTCTGA
Found at i:13236 original size:12 final size:12
Alignment explanation
Indices: 13204--13241 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
13194 CTAACACGCA
13204 TGTAAACCCCTTT
1 TGTAAACCCC-TT
13217 TGTAAACCCCTT
1 TGTAAACCCCTT
*
13229 TGTTAACCCCTT
1 TGTAAACCCCTT
13241 T
1 T
13242 TGCATCTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.21, C:0.32, G:0.08, T:0.39
Consensus pattern (12 bp):
TGTAAACCCCTT
Left flanking sequence: Indices 12704 -- 13203
CTTCCTACGCGACCGTTATCTTCATGCAGTACCAAATCTCAAAATAAACAACATGTCTACCGCCC
CAGACTACACTATACACCCGCTGCTCAGCGACACAGAGGCCAAGATCCTCGAGCAGTACCGCCTC
ACCGTGCAATACCTCACCCAGATAGAGGACGAGCTCGACGCACTCATTCTGGGCGACTCCCCCAT
CGAGACGATCCGGGAAAACCTGCGGGCGTTGGAGATGCAGTTGGCGGTGATCCACTCGCTCTTCC
CGTCGTCGGTGTTTGCGGTGTACCAGTCTTCCCAGAACCAGCCGCCTGTTTGAGTCCAGAGACGT
TGAAGTCCAGAGACGGGGGATGGATAACGTCACGTGTGTTCGATCGCGTGCTCAGAACCACGTGC
CAAGATATGATATGAGATGGTCACAAGATAAGCTGAGTGCTTTCTGCAGACGCCTTGAGTAATCG
GGAGTCGAGAGGTTCATCTACTCGGGGTAAGCGTCCTAACACGCA
Right flanking sequence: Indices 13242 -- 13741
TGCATCTTTCACCGCTAGTCCACTACTAGTCTTCCACGAGCTCTTCCCTGATTACCATTATCACA
GGCTCCGGGAGTCAGCCGTTCCATCCACATGACAGACACCAATCACGCTGACTTTAATCACGCTG
ACATTAACCCCGTGCCAAGCAAACCAAGAATTCGCCCGATGAACCAAGAAAACAGCAAGATTTAG
TCTGTCAATGCACGTAATATACCGATATGTACTATATTTAGATGAATTTGTGCGCCGCCTCGGCC
CACCTTACAGCGGTTGCGTCTGACAATTTCACGTTTAGAGTCAGGAACGCCCCAGAGCAATCATG
TGCTCGCTGTATGGTCCATCCTCATCGCTCTGTTATCGCGTTCTCCACACCGTAGATCTCTGACT
ACACGAGCCACAAAACCGCTCAAACGAGCCAGTTCGTATTCCGTGATTGTTCTCGTGTTCGCTCC
TCTGCCGTCGTGTTTTCGCCAGGCTCGTCTACCGGTTGTCTGTCT
Found at i:13367 original size:15 final size:15
Alignment explanation
Indices: 13347--13378 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13337 GACAGACACC
*
13347 AATCACGCTGACTTT
1 AATCACGCTGACATT
13362 AATCACGCTGACATT
1 AATCACGCTGACATT
13377 AA
1 AA
13379 CCCCGTGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (15 bp):
AATCACGCTGACATT
Left flanking sequence: Indices 12847 -- 13346
TCACCCAGATAGAGGACGAGCTCGACGCACTCATTCTGGGCGACTCCCCCATCGAGACGATCCGG
GAAAACCTGCGGGCGTTGGAGATGCAGTTGGCGGTGATCCACTCGCTCTTCCCGTCGTCGGTGTT
TGCGGTGTACCAGTCTTCCCAGAACCAGCCGCCTGTTTGAGTCCAGAGACGTTGAAGTCCAGAGA
CGGGGGATGGATAACGTCACGTGTGTTCGATCGCGTGCTCAGAACCACGTGCCAAGATATGATAT
GAGATGGTCACAAGATAAGCTGAGTGCTTTCTGCAGACGCCTTGAGTAATCGGGAGTCGAGAGGT
TCATCTACTCGGGGTAAGCGTCCTAACACGCATGTAAACCCCTTTTGTAAACCCCTTTGTTAACC
CCTTTTGCATCTTTCACCGCTAGTCCACTACTAGTCTTCCACGAGCTCTTCCCTGATTACCATTA
TCACAGGCTCCGGGAGTCAGCCGTTCCATCCACATGACAGACACC
Right flanking sequence: Indices 13379 -- 13878
CCCCGTGCCAAGCAAACCAAGAATTCGCCCGATGAACCAAGAAAACAGCAAGATTTAGTCTGTCA
ATGCACGTAATATACCGATATGTACTATATTTAGATGAATTTGTGCGCCGCCTCGGCCCACCTTA
CAGCGGTTGCGTCTGACAATTTCACGTTTAGAGTCAGGAACGCCCCAGAGCAATCATGTGCTCGC
TGTATGGTCCATCCTCATCGCTCTGTTATCGCGTTCTCCACACCGTAGATCTCTGACTACACGAG
CCACAAAACCGCTCAAACGAGCCAGTTCGTATTCCGTGATTGTTCTCGTGTTCGCTCCTCTGCCG
TCGTGTTTTCGCCAGGCTCGTCTACCGGTTGTCTGTCTGATTGTGCCTATCTCGTGGTTTCCCGG
CTAAGCATGAGAGTCACTCCACACTTCACTTGCACCATGCAAAGGCGCCCGCGGAGCAGTGGTCC
CTCCCACGGGCATGGCCTAGTGCAGGGTCCGATGGGCGCCCGGGG
Found at i:16824 original size:18 final size:19
Alignment explanation
Indices: 16802--16945 Score: 100
Period size: 18 Copynumber: 7.7 Consensus size: 19
16792 AATGGTTGTT
**
16802 ACTGATCATGGCTGTCGT-
1 ACTGATCATAACTGTCGTA
*
16820 ACTGATAATAACTGTCGTA
1 ACTGATCATAACTGTCGTA
**
16839 ACTGATCACCACTGTCGTA
1 ACTGATCATAACTGTCGTA
* * *
16858 ACTGATCATTACTGATCATT
1 ACTGATCATAACTG-TCGTA
16878 ACTGATCA-ATACTGATCG-A
1 ACTGATCATA-ACTG-TCGTA
* * *
16897 AGTG-TCGTAAGTGTCGTA
1 ACTGATCATAACTGTCGTA
* *
16915 ACTGATCA-GACTGTCGTT
1 ACTGATCATAACTGTCGTA
*
16933 GCTGATCATAACT
1 ACTGATCATAACT
16946 AAATGATCAC
Statistics
Matches: 96, Mismatches: 23, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
17 3 0.03
18 38 0.40
19 37 0.39
20 18 0.19
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (19 bp):
ACTGATCATAACTGTCGTA
Left flanking sequence: Indices 16302 -- 16801
GGGGTCCTGCGACTCGAACTTCTGTTGTGGTGACATCTGGTGCGTCTGCCTAATTCGTGAGAAAA
TTACAAAAATTGTGAAGATAAGAGAGAAAGAAAGATAAGGACGGAGAGCAAAGAAAAGGATAGAA
AATAATGGAGAATTTATTATGCTCGAGGAATGATCGTTTCAGTGTTATCGCCTTCTAGCTACCGT
AGTGACATTCCCGGCCAGTTTCATACACGGTCTCCTATTCACATTCCGTCGCGACCGCCTGCTGC
CGGGACTACTAACCAAAGGGGAAAGTCACGCGAGACCGCCTCTGGATCGGCGTTTGTGTGCCGAC
ACTGACGTTAGTTAGACGAGGCAACAGAGATGGTGTGATAGGCTGCATCACTAATTCCTGAGTAA
AACAAGGTAACCACAACGTGACGAGTGTCGTGAAGAGACGAGCAGTGGCGAGTAATTCAGGTGAT
CCCGCGACTGATCAAACGATCGTTACTGAACATTAAATGGTTGTT
Right flanking sequence: Indices 16946 -- 17445
AAATGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAGCTGATCACCACTCATAGCTA
ACGTAACTGATTACTCATCGAAACTAATCACCACTCCATAACTATCGTCTGACTACTAATCATAA
CTGATCACCACTTCACATCTATCGCAACAGACTATCGTAACTAATCACCACTTCATAACTATCGT
AACTGACTACTCATCGAACTATCACCGCTTCAAAACTATTCTGACAGACTACTCATCAAAACTGA
TCACCTCTTCATAATTACTCTTTAACTGCTCCCTTCATTGCTACCCATCTACCTTTAGTACTCCT
CTATTCTATTAAAACGCATAACTCCAAACCTCAGCCTATATTACAGATGCTAACTACTCCTGGCG
CTGGTACACCAAAATGTAGGCGTTGCGAGCCTCGTCGCGGGTGTCCACCACCTCCTCAGCCTCGA
TCTTCGTCACCACGGTGTCGTCGACCCGCACCCACTCGGGGGTCG
Found at i:16844 original size:19 final size:19
Alignment explanation
Indices: 16813--16863 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
16803 CTGATCATGG
*
16813 CTGTCGT-ACTGATAATAA
1 CTGTCGTAACTGATAACAA
* *
16831 CTGTCGTAACTGATCACCA
1 CTGTCGTAACTGATAACAA
16850 CTGTCGTAACTGAT
1 CTGTCGTAACTGAT
16864 CATTACTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (19 bp):
CTGTCGTAACTGATAACAA
Left flanking sequence: Indices 16313 -- 16812
ACTCGAACTTCTGTTGTGGTGACATCTGGTGCGTCTGCCTAATTCGTGAGAAAATTACAAAAATT
GTGAAGATAAGAGAGAAAGAAAGATAAGGACGGAGAGCAAAGAAAAGGATAGAAAATAATGGAGA
ATTTATTATGCTCGAGGAATGATCGTTTCAGTGTTATCGCCTTCTAGCTACCGTAGTGACATTCC
CGGCCAGTTTCATACACGGTCTCCTATTCACATTCCGTCGCGACCGCCTGCTGCCGGGACTACTA
ACCAAAGGGGAAAGTCACGCGAGACCGCCTCTGGATCGGCGTTTGTGTGCCGACACTGACGTTAG
TTAGACGAGGCAACAGAGATGGTGTGATAGGCTGCATCACTAATTCCTGAGTAAAACAAGGTAAC
CACAACGTGACGAGTGTCGTGAAGAGACGAGCAGTGGCGAGTAATTCAGGTGATCCCGCGACTGA
TCAAACGATCGTTACTGAACATTAAATGGTTGTTACTGATCATGG
Right flanking sequence: Indices 16864 -- 17363
CATTACTGATCATTACTGATCAATACTGATCGAAGTGTCGTAAGTGTCGTAACTGATCAGACTGT
CGTTGCTGATCATAACTAAATGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAGCTG
ATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAACTAATCACCACTCCATAACTATCGT
CTGACTACTAATCATAACTGATCACCACTTCACATCTATCGCAACAGACTATCGTAACTAATCAC
CACTTCATAACTATCGTAACTGACTACTCATCGAACTATCACCGCTTCAAAACTATTCTGACAGA
CTACTCATCAAAACTGATCACCTCTTCATAATTACTCTTTAACTGCTCCCTTCATTGCTACCCAT
CTACCTTTAGTACTCCTCTATTCTATTAAAACGCATAACTCCAAACCTCAGCCTATATTACAGAT
GCTAACTACTCCTGGCGCTGGTACACCAAAATGTAGGCGTTGCGA
Found at i:16871 original size:10 final size:10
Alignment explanation
Indices: 16858--16894 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
16848 CACTGTCGTA
16858 ACTGATCATT
1 ACTGATCATT
16868 ACTGATCATT
1 ACTGATCATT
*
16878 ACTGATCAAT
1 ACTGATCATT
16888 ACTGATC
1 ACTGATC
16895 GAAGTGTCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (10 bp):
ACTGATCATT
Left flanking sequence: Indices 16358 -- 16857
GTGAGAAAATTACAAAAATTGTGAAGATAAGAGAGAAAGAAAGATAAGGACGGAGAGCAAAGAAA
AGGATAGAAAATAATGGAGAATTTATTATGCTCGAGGAATGATCGTTTCAGTGTTATCGCCTTCT
AGCTACCGTAGTGACATTCCCGGCCAGTTTCATACACGGTCTCCTATTCACATTCCGTCGCGACC
GCCTGCTGCCGGGACTACTAACCAAAGGGGAAAGTCACGCGAGACCGCCTCTGGATCGGCGTTTG
TGTGCCGACACTGACGTTAGTTAGACGAGGCAACAGAGATGGTGTGATAGGCTGCATCACTAATT
CCTGAGTAAAACAAGGTAACCACAACGTGACGAGTGTCGTGAAGAGACGAGCAGTGGCGAGTAAT
TCAGGTGATCCCGCGACTGATCAAACGATCGTTACTGAACATTAAATGGTTGTTACTGATCATGG
CTGTCGTACTGATAATAACTGTCGTAACTGATCACCACTGTCGTA
Right flanking sequence: Indices 16895 -- 17394
GAAGTGTCGTAAGTGTCGTAACTGATCAGACTGTCGTTGCTGATCATAACTAAATGATCACCACT
CATAGCTAACGTAACTGATTACTCATCGAAGCTGATCACCACTCATAGCTAACGTAACTGATTAC
TCATCGAAACTAATCACCACTCCATAACTATCGTCTGACTACTAATCATAACTGATCACCACTTC
ACATCTATCGCAACAGACTATCGTAACTAATCACCACTTCATAACTATCGTAACTGACTACTCAT
CGAACTATCACCGCTTCAAAACTATTCTGACAGACTACTCATCAAAACTGATCACCTCTTCATAA
TTACTCTTTAACTGCTCCCTTCATTGCTACCCATCTACCTTTAGTACTCCTCTATTCTATTAAAA
CGCATAACTCCAAACCTCAGCCTATATTACAGATGCTAACTACTCCTGGCGCTGGTACACCAAAA
TGTAGGCGTTGCGAGCCTCGTCGCGGGTGTCCACCACCTCCTCAG
Found at i:16997 original size:43 final size:43
Alignment explanation
Indices: 16949--17166 Score: 193
Period size: 43 Copynumber: 5.2 Consensus size: 43
16939 CATAACTAAA
*
16949 TGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAGC
1 TGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAAC
16992 TGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAAC
1 TGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAAC
* * * * *
17035 TAATCACCACTCCATAACTATCGT--CTGACTACTAATC-ATAAC
1 TGATCACCACT-CATAGCTAACGTAACTGATTACTCATCGA-AAC
* * * * * *
17077 TGATCACCACTTCACATCTATCGCAAC--A-GACT-ATCGTAAC
1 TGATCACCAC-TCATAGCTAACGTAACTGATTACTCATCGAAAC
* * * *
17117 TAATCACCACTTCATAACTATCGTAACTGACTACTCATCG-AAC
1 TGATCACCAC-TCATAGCTAACGTAACTGATTACTCATCGAAAC
17160 T-ATCACC
1 TGATCACC
17167 GCTTCAAAAC
Statistics
Matches: 148, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
40 29 0.20
41 4 0.03
42 40 0.27
43 60 0.41
44 15 0.10
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.27
Consensus pattern (43 bp):
TGATCACCACTCATAGCTAACGTAACTGATTACTCATCGAAAC
Left flanking sequence: Indices 16449 -- 16948
TATGCTCGAGGAATGATCGTTTCAGTGTTATCGCCTTCTAGCTACCGTAGTGACATTCCCGGCCA
GTTTCATACACGGTCTCCTATTCACATTCCGTCGCGACCGCCTGCTGCCGGGACTACTAACCAAA
GGGGAAAGTCACGCGAGACCGCCTCTGGATCGGCGTTTGTGTGCCGACACTGACGTTAGTTAGAC
GAGGCAACAGAGATGGTGTGATAGGCTGCATCACTAATTCCTGAGTAAAACAAGGTAACCACAAC
GTGACGAGTGTCGTGAAGAGACGAGCAGTGGCGAGTAATTCAGGTGATCCCGCGACTGATCAAAC
GATCGTTACTGAACATTAAATGGTTGTTACTGATCATGGCTGTCGTACTGATAATAACTGTCGTA
ACTGATCACCACTGTCGTAACTGATCATTACTGATCATTACTGATCAATACTGATCGAAGTGTCG
TAAGTGTCGTAACTGATCAGACTGTCGTTGCTGATCATAACTAAA
Right flanking sequence: Indices 17167 -- 17666
GCTTCAAAACTATTCTGACAGACTACTCATCAAAACTGATCACCTCTTCATAATTACTCTTTAAC
TGCTCCCTTCATTGCTACCCATCTACCTTTAGTACTCCTCTATTCTATTAAAACGCATAACTCCA
AACCTCAGCCTATATTACAGATGCTAACTACTCCTGGCGCTGGTACACCAAAATGTAGGCGTTGC
GAGCCTCGTCGCGGGTGTCCACCACCTCCTCAGCCTCGATCTTCGTCACCACGGTGTCGTCGACC
CGCACCCACTCGGGGGTCGCCACGTCGCACGTGTAGTGTCCGTTGGCCGCGGAGGTGCCGTGGTG
GTACACCACCCCCACCAACTTGTAGCTCAAATTGGCCACCTCGGACGGGGGGCCGTATATGATCT
GGCGAGGCACCTGGAGGTCGTGTCCGTACCGGATGGGCTTGCACAACTTCTCGATGCCCAGCCCA
AACGAAAACCGCTTGAGGTGGATGGTCAAGATGTGCGGCAACTTG
Found at i:17098 original size:42 final size:42
Alignment explanation
Indices: 16951--17219 Score: 160
Period size: 43 Copynumber: 6.4 Consensus size: 42
16941 TAACTAAATG
* * * * *
16951 ATCACCAC-TCATAGCTAACGTAACTGATTACTCATCGA-AGCTG
1 ATCACCACTTCATAACTATCGT--CTGACTACTCATC-ATAACTA
* * *
16994 ATCACCAC-TCATAGCTAACGTAACTGATTACTCATCGA-AACTA
1 ATCACCACTTCATAACTATCGT--CTGACTACTCATC-ATAACTA
* * *
17037 ATCACCACTCCATAACTATCGTCTGACTACTAATCATAACTG
1 ATCACCACTTCATAACTATCGTCTGACTACTCATCATAACTA
* * * * *
17079 ATCACCACTTCACATCTATCG-C-AACAGACT-ATCGTAACTA
1 ATCACCACTTCATAACTATCGTCTGAC-TACTCATCATAACTA
*
17119 ATCACCACTTCATAACTATCGTAACTGACTACTCATC-GAACT-
1 ATCACCACTTCATAACTATCGT--CTGACTACTCATCATAACTA
* * * * * *
17161 ATCACCGCTTCAAAACTATTCTGACAGACTACTCATCAAAACTG
1 ATCACCACTTCATAACTA-TC-GTCTGACTACTCATCATAACTA
*
17205 ATCACCTCTTCATAA
1 ATCACCACTTCATAA
17220 TTACTCTTTA
Statistics
Matches: 187, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
40 29 0.16
41 5 0.03
42 61 0.33
43 63 0.34
44 29 0.16
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.27
Consensus pattern (42 bp):
ATCACCACTTCATAACTATCGTCTGACTACTCATCATAACTA
Left flanking sequence: Indices 16451 -- 16950
TGCTCGAGGAATGATCGTTTCAGTGTTATCGCCTTCTAGCTACCGTAGTGACATTCCCGGCCAGT
TTCATACACGGTCTCCTATTCACATTCCGTCGCGACCGCCTGCTGCCGGGACTACTAACCAAAGG
GGAAAGTCACGCGAGACCGCCTCTGGATCGGCGTTTGTGTGCCGACACTGACGTTAGTTAGACGA
GGCAACAGAGATGGTGTGATAGGCTGCATCACTAATTCCTGAGTAAAACAAGGTAACCACAACGT
GACGAGTGTCGTGAAGAGACGAGCAGTGGCGAGTAATTCAGGTGATCCCGCGACTGATCAAACGA
TCGTTACTGAACATTAAATGGTTGTTACTGATCATGGCTGTCGTACTGATAATAACTGTCGTAAC
TGATCACCACTGTCGTAACTGATCATTACTGATCATTACTGATCAATACTGATCGAAGTGTCGTA
AGTGTCGTAACTGATCAGACTGTCGTTGCTGATCATAACTAAATG
Right flanking sequence: Indices 17220 -- 17719
TTACTCTTTAACTGCTCCCTTCATTGCTACCCATCTACCTTTAGTACTCCTCTATTCTATTAAAA
CGCATAACTCCAAACCTCAGCCTATATTACAGATGCTAACTACTCCTGGCGCTGGTACACCAAAA
TGTAGGCGTTGCGAGCCTCGTCGCGGGTGTCCACCACCTCCTCAGCCTCGATCTTCGTCACCACG
GTGTCGTCGACCCGCACCCACTCGGGGGTCGCCACGTCGCACGTGTAGTGTCCGTTGGCCGCGGA
GGTGCCGTGGTGGTACACCACCCCCACCAACTTGTAGCTCAAATTGGCCACCTCGGACGGGGGGC
CGTATATGATCTGGCGAGGCACCTGGAGGTCGTGTCCGTACCGGATGGGCTTGCACAACTTCTCG
ATGCCCAGCCCAAACGAAAACCGCTTGAGGTGGATGGTCAAGATGTGCGGCAACTTGTCGATAAA
GTTCTGCTTCTTGACCACCGCCTGCTGCTTGGCGTCCAACACAAT
Found at i:17128 original size:40 final size:40
Alignment explanation
Indices: 17027--17149 Score: 113
Period size: 40 Copynumber: 3.0 Consensus size: 40
17017 CTGATTACTC
* * * * *
17027 ATCGAAACTAATCACCACTCCATAACTATCGTCTGAC-TACT
1 ATCGTAACTAATCACCACTTCACAACTATCG-C-AACAGACT
* * *
17068 AATCATAACTGATCACCACTTCACATCTATCGCAACAGACT
1 -ATCGTAACTAATCACCACTTCACAACTATCGCAACAGACT
* * *
17109 ATCGTAACTAATCACCACTTCATAACTATCGTAACTGACT
1 ATCGTAACTAATCACCACTTCACAACTATCGCAACAGACT
17149 A
1 A
17150 CTCATCGAAC
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
40 37 0.56
41 4 0.06
42 25 0.38
ACGTcount: A:0.36, C:0.30, G:0.07, T:0.27
Consensus pattern (40 bp):
ATCGTAACTAATCACCACTTCACAACTATCGCAACAGACT
Left flanking sequence: Indices 16527 -- 17026
TCTCCTATTCACATTCCGTCGCGACCGCCTGCTGCCGGGACTACTAACCAAAGGGGAAAGTCACG
CGAGACCGCCTCTGGATCGGCGTTTGTGTGCCGACACTGACGTTAGTTAGACGAGGCAACAGAGA
TGGTGTGATAGGCTGCATCACTAATTCCTGAGTAAAACAAGGTAACCACAACGTGACGAGTGTCG
TGAAGAGACGAGCAGTGGCGAGTAATTCAGGTGATCCCGCGACTGATCAAACGATCGTTACTGAA
CATTAAATGGTTGTTACTGATCATGGCTGTCGTACTGATAATAACTGTCGTAACTGATCACCACT
GTCGTAACTGATCATTACTGATCATTACTGATCAATACTGATCGAAGTGTCGTAAGTGTCGTAAC
TGATCAGACTGTCGTTGCTGATCATAACTAAATGATCACCACTCATAGCTAACGTAACTGATTAC
TCATCGAAGCTGATCACCACTCATAGCTAACGTAACTGATTACTC
Right flanking sequence: Indices 17150 -- 17649
CTCATCGAACTATCACCGCTTCAAAACTATTCTGACAGACTACTCATCAAAACTGATCACCTCTT
CATAATTACTCTTTAACTGCTCCCTTCATTGCTACCCATCTACCTTTAGTACTCCTCTATTCTAT
TAAAACGCATAACTCCAAACCTCAGCCTATATTACAGATGCTAACTACTCCTGGCGCTGGTACAC
CAAAATGTAGGCGTTGCGAGCCTCGTCGCGGGTGTCCACCACCTCCTCAGCCTCGATCTTCGTCA
CCACGGTGTCGTCGACCCGCACCCACTCGGGGGTCGCCACGTCGCACGTGTAGTGTCCGTTGGCC
GCGGAGGTGCCGTGGTGGTACACCACCCCCACCAACTTGTAGCTCAAATTGGCCACCTCGGACGG
GGGGCCGTATATGATCTGGCGAGGCACCTGGAGGTCGTGTCCGTACCGGATGGGCTTGCACAACT
TCTCGATGCCCAGCCCAAACGAAAACCGCTTGAGGTGGATGGTCA
Found at i:17191 original size:82 final size:81
Alignment explanation
Indices: 17027--17179 Score: 202
Period size: 82 Copynumber: 1.9 Consensus size: 81
17017 CTGATTACTC
* *
17027 ATCGAAACTAATCACCACTCCATAACTATCGTCTGACTACTAATCATAACTGATCACCACTTCAC
1 ATCGAAACTAATCACCACTCCATAACTATCGTCTGACTACTAATCAGAACTGATCACCACTTCAA
*
17092 ATCTATCGCAACAGACT
66 AACTATCG-AACAGACT
* * * *
17109 ATCGTAACTAATCACCACTTCATAACTATCGTAACTGACTACTCATC-GAACT-ATCACCGCTTC
1 ATCGAAACTAATCACCACTCCATAACTATCGT--CTGACTACTAATCAGAACTGATCACCACTTC
17172 AAAACTAT
64 AAAACTAT
17180 TCTGACAGAC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
82 46 0.74
83 4 0.06
84 12 0.19
ACGTcount: A:0.35, C:0.31, G:0.07, T:0.27
Consensus pattern (81 bp):
ATCGAAACTAATCACCACTCCATAACTATCGTCTGACTACTAATCAGAACTGATCACCACTTCAA
AACTATCGAACAGACT
Left flanking sequence: Indices 16527 -- 17026
TCTCCTATTCACATTCCGTCGCGACCGCCTGCTGCCGGGACTACTAACCAAAGGGGAAAGTCACG
CGAGACCGCCTCTGGATCGGCGTTTGTGTGCCGACACTGACGTTAGTTAGACGAGGCAACAGAGA
TGGTGTGATAGGCTGCATCACTAATTCCTGAGTAAAACAAGGTAACCACAACGTGACGAGTGTCG
TGAAGAGACGAGCAGTGGCGAGTAATTCAGGTGATCCCGCGACTGATCAAACGATCGTTACTGAA
CATTAAATGGTTGTTACTGATCATGGCTGTCGTACTGATAATAACTGTCGTAACTGATCACCACT
GTCGTAACTGATCATTACTGATCATTACTGATCAATACTGATCGAAGTGTCGTAAGTGTCGTAAC
TGATCAGACTGTCGTTGCTGATCATAACTAAATGATCACCACTCATAGCTAACGTAACTGATTAC
TCATCGAAGCTGATCACCACTCATAGCTAACGTAACTGATTACTC
Right flanking sequence: Indices 17180 -- 17679
TCTGACAGACTACTCATCAAAACTGATCACCTCTTCATAATTACTCTTTAACTGCTCCCTTCATT
GCTACCCATCTACCTTTAGTACTCCTCTATTCTATTAAAACGCATAACTCCAAACCTCAGCCTAT
ATTACAGATGCTAACTACTCCTGGCGCTGGTACACCAAAATGTAGGCGTTGCGAGCCTCGTCGCG
GGTGTCCACCACCTCCTCAGCCTCGATCTTCGTCACCACGGTGTCGTCGACCCGCACCCACTCGG
GGGTCGCCACGTCGCACGTGTAGTGTCCGTTGGCCGCGGAGGTGCCGTGGTGGTACACCACCCCC
ACCAACTTGTAGCTCAAATTGGCCACCTCGGACGGGGGGCCGTATATGATCTGGCGAGGCACCTG
GAGGTCGTGTCCGTACCGGATGGGCTTGCACAACTTCTCGATGCCCAGCCCAAACGAAAACCGCT
TGAGGTGGATGGTCAAGATGTGCGGCAACTTGTCGATAAAGTTCT
Found at i:19961 original size:22 final size:22
Alignment explanation
Indices: 19936--19985 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
19926 AAGGTGGAGG
*
19936 AGAGGAGTAGACGAGGAGACGA
1 AGAGGAGTAGAAGAGGAGACGA
* **
19958 AGAGGAGTTGAAGAGTTGACGA
1 AGAGGAGTAGAAGAGGAGACGA
19980 AGAGGA
1 AGAGGA
19986 AACGAAGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.44, T:0.10
Consensus pattern (22 bp):
AGAGGAGTAGAAGAGGAGACGA
Left flanking sequence: Indices 19436 -- 19935
CATCACCATCGGGTTGTAGTACTGCGGGGCGTACAGCGGGTACAGCCCGTGCGGCGGGTGGTGGT
GGTGGTGGTGCTGCATCTGGTGGTGAGGAGGATAGTCGCGGTGGTAGGGGTAGCCCTCGCCAGGC
AGGAACGGCTTGGCCGTCGGACGGAACCGGGGGGTGTTGCTCGACATGCTGGGCAGGTGACTAGT
GGCGGATGACGTGGGCTAGCGGCCGCGGTTGTGCAGGGGTTCGTGGTTCAGACAGTGGGTGGCTA
GCTCCTCCTCTGGAAAAATTTGGTGTGGTTTTTTCCTCAGGTGCAGGTGCGCGGGTGGCAACCGA
TGACGGAGGAAGCCGGTGGAGGGGGGTGGGGGGGTGGTATAGGGGTGGTGTGAAGACGGGCTAGG
TTGGGGATGGTGTGGGGAGAGTTTGGACGGGGATGATGTGAAGAGGTTTAGATTGTTTTGTGGAA
TTTAGATGGATTTGTTGTAGTTTGTAGGTTGAAAAAAGGTGGAGG
Right flanking sequence: Indices 19986 -- 20485
AACGAAGAGGAGTAGAAAACAGAGAAGAAGGAGAAGATCCAGGTGGTGGGTATGTATATGTGTTG
GTGTGGTTAGTGTGGTTGGTGTGGTTGGTTCAGCCTTTATTTGTGACTCGGATGATATTCCCGGA
TAGTTTAAGTCGTATTTGTTGGGTTGATGAGACTACTGGTAGTTAGTTTAGTGTGATGAGTGACG
CATTGACAGGTGGGAGGTTATAGTTTCTGAAGAATTCTCGTTGTGAGTTCTCGTTGTGAAATCTC
GTGTTAACCGTTCGACTCGTACAAAAGCCCTCGGGTGCCAAACGAGTACGCACAAAGTGGGTTCG
TAGACGCTGGGTGGACACAAGCCCGTAACCGCAAAAACGTTCTATTTTGCCTCAAGCGTTAGCTG
TGTCATTAACCGTTTTAGTCAGACGAAGAAACGGGCAGACATACGAAATGGTGTGATTTGGGTAC
TAGAATGCTAAGGTTAGCCTTGACGAGCATTTTTGGTGTATGTGC
Found at i:19962 original size:11 final size:11
Alignment explanation
Indices: 19948--19997 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
19938 AGGAGTAGAC
19948 GAGGAGACGAA
1 GAGGAGACGAA
**
19959 GAGGAGTTGAA
1 GAGGAGACGAA
**
19970 GAGTTGACGAA
1 GAGGAGACGAA
*
19981 GAGGAAACGAA
1 GAGGAGACGAA
19992 GAGGAG
1 GAGGAG
19998 TAGAAAACAG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.42, C:0.06, G:0.44, T:0.08
Consensus pattern (11 bp):
GAGGAGACGAA
Left flanking sequence: Indices 19448 -- 19947
GTTGTAGTACTGCGGGGCGTACAGCGGGTACAGCCCGTGCGGCGGGTGGTGGTGGTGGTGGTGCT
GCATCTGGTGGTGAGGAGGATAGTCGCGGTGGTAGGGGTAGCCCTCGCCAGGCAGGAACGGCTTG
GCCGTCGGACGGAACCGGGGGGTGTTGCTCGACATGCTGGGCAGGTGACTAGTGGCGGATGACGT
GGGCTAGCGGCCGCGGTTGTGCAGGGGTTCGTGGTTCAGACAGTGGGTGGCTAGCTCCTCCTCTG
GAAAAATTTGGTGTGGTTTTTTCCTCAGGTGCAGGTGCGCGGGTGGCAACCGATGACGGAGGAAG
CCGGTGGAGGGGGGTGGGGGGGTGGTATAGGGGTGGTGTGAAGACGGGCTAGGTTGGGGATGGTG
TGGGGAGAGTTTGGACGGGGATGATGTGAAGAGGTTTAGATTGTTTTGTGGAATTTAGATGGATT
TGTTGTAGTTTGTAGGTTGAAAAAAGGTGGAGGAGAGGAGTAGAC
Right flanking sequence: Indices 19998 -- 20497
TAGAAAACAGAGAAGAAGGAGAAGATCCAGGTGGTGGGTATGTATATGTGTTGGTGTGGTTAGTG
TGGTTGGTGTGGTTGGTTCAGCCTTTATTTGTGACTCGGATGATATTCCCGGATAGTTTAAGTCG
TATTTGTTGGGTTGATGAGACTACTGGTAGTTAGTTTAGTGTGATGAGTGACGCATTGACAGGTG
GGAGGTTATAGTTTCTGAAGAATTCTCGTTGTGAGTTCTCGTTGTGAAATCTCGTGTTAACCGTT
CGACTCGTACAAAAGCCCTCGGGTGCCAAACGAGTACGCACAAAGTGGGTTCGTAGACGCTGGGT
GGACACAAGCCCGTAACCGCAAAAACGTTCTATTTTGCCTCAAGCGTTAGCTGTGTCATTAACCG
TTTTAGTCAGACGAAGAAACGGGCAGACATACGAAATGGTGTGATTTGGGTACTAGAATGCTAAG
GTTAGCCTTGACGAGCATTTTTGGTGTATGTGCCAAAACAATAAA
Found at i:20077 original size:9 final size:9
Alignment explanation
Indices: 20047--20079 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
20037 ATGTATATGT
20047 GTTGGTGTG
1 GTTGGTGTG
*
20056 GTTAGTGTG
1 GTTGGTGTG
20065 GTTGGTGTG
1 GTTGGTGTG
20074 GTTGGT
1 GTTGGT
20080 TCAGCCTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.03, C:0.00, G:0.52, T:0.45
Consensus pattern (9 bp):
GTTGGTGTG
Left flanking sequence: Indices 19547 -- 20046
GGGGTAGCCCTCGCCAGGCAGGAACGGCTTGGCCGTCGGACGGAACCGGGGGGTGTTGCTCGACA
TGCTGGGCAGGTGACTAGTGGCGGATGACGTGGGCTAGCGGCCGCGGTTGTGCAGGGGTTCGTGG
TTCAGACAGTGGGTGGCTAGCTCCTCCTCTGGAAAAATTTGGTGTGGTTTTTTCCTCAGGTGCAG
GTGCGCGGGTGGCAACCGATGACGGAGGAAGCCGGTGGAGGGGGGTGGGGGGGTGGTATAGGGGT
GGTGTGAAGACGGGCTAGGTTGGGGATGGTGTGGGGAGAGTTTGGACGGGGATGATGTGAAGAGG
TTTAGATTGTTTTGTGGAATTTAGATGGATTTGTTGTAGTTTGTAGGTTGAAAAAAGGTGGAGGA
GAGGAGTAGACGAGGAGACGAAGAGGAGTTGAAGAGTTGACGAAGAGGAAACGAAGAGGAGTAGA
AAACAGAGAAGAAGGAGAAGATCCAGGTGGTGGGTATGTATATGT
Right flanking sequence: Indices 20080 -- 20579
TCAGCCTTTATTTGTGACTCGGATGATATTCCCGGATAGTTTAAGTCGTATTTGTTGGGTTGATG
AGACTACTGGTAGTTAGTTTAGTGTGATGAGTGACGCATTGACAGGTGGGAGGTTATAGTTTCTG
AAGAATTCTCGTTGTGAGTTCTCGTTGTGAAATCTCGTGTTAACCGTTCGACTCGTACAAAAGCC
CTCGGGTGCCAAACGAGTACGCACAAAGTGGGTTCGTAGACGCTGGGTGGACACAAGCCCGTAAC
CGCAAAAACGTTCTATTTTGCCTCAAGCGTTAGCTGTGTCATTAACCGTTTTAGTCAGACGAAGA
AACGGGCAGACATACGAAATGGTGTGATTTGGGTACTAGAATGCTAAGGTTAGCCTTGACGAGCA
TTTTTGGTGTATGTGCCAAAACAATAAACTCTCCAACAGAAGACCGTCTCGTTTTACGCCTCCTC
TTTCCACCCCCTTCTTCCCCTCTACGATGGTATACTATCACGTGC
Found at i:20233 original size:13 final size:13
Alignment explanation
Indices: 20215--20239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20205 TTCTGAAGAA
20215 TTCTCGTTGTGAG
1 TTCTCGTTGTGAG
20228 TTCTCGTTGTGA
1 TTCTCGTTGTGA
20240 AATCTCGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.28, T:0.48
Consensus pattern (13 bp):
TTCTCGTTGTGAG
Left flanking sequence: Indices 19715 -- 20214
TTGGTGTGGTTTTTTCCTCAGGTGCAGGTGCGCGGGTGGCAACCGATGACGGAGGAAGCCGGTGG
AGGGGGGTGGGGGGGTGGTATAGGGGTGGTGTGAAGACGGGCTAGGTTGGGGATGGTGTGGGGAG
AGTTTGGACGGGGATGATGTGAAGAGGTTTAGATTGTTTTGTGGAATTTAGATGGATTTGTTGTA
GTTTGTAGGTTGAAAAAAGGTGGAGGAGAGGAGTAGACGAGGAGACGAAGAGGAGTTGAAGAGTT
GACGAAGAGGAAACGAAGAGGAGTAGAAAACAGAGAAGAAGGAGAAGATCCAGGTGGTGGGTATG
TATATGTGTTGGTGTGGTTAGTGTGGTTGGTGTGGTTGGTTCAGCCTTTATTTGTGACTCGGATG
ATATTCCCGGATAGTTTAAGTCGTATTTGTTGGGTTGATGAGACTACTGGTAGTTAGTTTAGTGT
GATGAGTGACGCATTGACAGGTGGGAGGTTATAGTTTCTGAAGAA
Right flanking sequence: Indices 20240 -- 20739
AATCTCGTGTTAACCGTTCGACTCGTACAAAAGCCCTCGGGTGCCAAACGAGTACGCACAAAGTG
GGTTCGTAGACGCTGGGTGGACACAAGCCCGTAACCGCAAAAACGTTCTATTTTGCCTCAAGCGT
TAGCTGTGTCATTAACCGTTTTAGTCAGACGAAGAAACGGGCAGACATACGAAATGGTGTGATTT
GGGTACTAGAATGCTAAGGTTAGCCTTGACGAGCATTTTTGGTGTATGTGCCAAAACAATAAACT
CTCCAACAGAAGACCGTCTCGTTTTACGCCTCCTCTTTCCACCCCCTTCTTCCCCTCTACGATGG
TATACTATCACGTGCTCTTTCGTAAATACGAGGAACCGTGCAGATTAAGCCCTGCACCGGGACGG
ATCGGGACATTTGGAACAGCGAGAAGTGCGGCGACGTGGAGGAATCGCCAGTGGTTCTGTCATTG
TTACACCCGTGTTGGGTACTCACCGGACGCACAGCATGTTGTCGC
Found at i:20852 original size:33 final size:34
Alignment explanation
Indices: 20814--20883 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
20804 TGCAGTTTTG
* *
20814 TTGATTGTAGGGTCTA-TTGATCGTAGGGTCTAC
1 TTGATTGTAGGGTCTACTTAACCGTAGGGTCTAC
20847 TTGATTGTAGGGTCTACTTAACCGTAGGGTCTAC
1 TTGATTGTAGGGTCTACTTAACCGTAGGGTCTAC
20881 TTG
1 TTG
20884 TCAATGTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 16 0.47
34 18 0.53
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.39
Consensus pattern (34 bp):
TTGATTGTAGGGTCTACTTAACCGTAGGGTCTAC
Left flanking sequence: Indices 20314 -- 20813
ACGCTGGGTGGACACAAGCCCGTAACCGCAAAAACGTTCTATTTTGCCTCAAGCGTTAGCTGTGT
CATTAACCGTTTTAGTCAGACGAAGAAACGGGCAGACATACGAAATGGTGTGATTTGGGTACTAG
AATGCTAAGGTTAGCCTTGACGAGCATTTTTGGTGTATGTGCCAAAACAATAAACTCTCCAACAG
AAGACCGTCTCGTTTTACGCCTCCTCTTTCCACCCCCTTCTTCCCCTCTACGATGGTATACTATC
ACGTGCTCTTTCGTAAATACGAGGAACCGTGCAGATTAAGCCCTGCACCGGGACGGATCGGGACA
TTTGGAACAGCGAGAAGTGCGGCGACGTGGAGGAATCGCCAGTGGTTCTGTCATTGTTACACCCG
TGTTGGGTACTCACCGGACGCACAGCATGTTGTCGCGATTTAGCACGACTAATGGGTCTACTAAA
ACAGTTTTGGTAGTTAGTTCTTAAGGGTCCTTCGTTGCAGTTTTG
Right flanking sequence: Indices 20884 -- 21383
TCAATGTTTATTTCTTCACAACCCGAGACGAGACACTCGTATTTAAAACCGAGTTCTACCAGTTT
CTCAAACCACTCTAAACCGATCCATTCTCTCTGAATGACTAAACCTAAAATGTATTATCAGCTGA
TCAGCAGACTAAACGGTCAGAAGTCATAAGGAAGCCCTCAAACCACAATCATGGTCACACTACTC
CACCGAACAGCCCTGTTTGCGACCAGCCTACCTGAACCCGAGAACCATGGCCAGACTCCAGAAAC
CAAACCCTCCAGAGAACACCACTACATCCGCAGACCCCCTACTGCGTTCAGATTCTTTTCTCTCT
TCTTTTCTCTCTCCCTTTCTTTCTTCCTTTCTCTCATCTTTTCTCTCTTCTTTTCTCTCTTTTCT
CTCTTCTTTTCTCTCTACTTTTCTCTATTTCTTCTTCCTATTAACCTAAAAGAGACTCCTCTTCC
TCGCCCGTGCCCGAGTTGTGCCGCGACCCCTGCTTCAGCTTGCGC
Found at i:20856 original size:17 final size:17
Alignment explanation
Indices: 20814--20883 Score: 97
Period size: 17 Copynumber: 4.2 Consensus size: 17
20804 TGCAGTTTTG
*
20814 TTGATTGTAGGGTCTA-
1 TTGATCGTAGGGTCTAC
20830 TTGATCGTAGGGTCTAC
1 TTGATCGTAGGGTCTAC
*
20847 TTGATTGTAGGGTCTAC
1 TTGATCGTAGGGTCTAC
* *
20864 TTAACCGTAGGGTCTAC
1 TTGATCGTAGGGTCTAC
20881 TTG
1 TTG
20884 TCAATGTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
16 15 0.32
17 32 0.68
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.39
Consensus pattern (17 bp):
TTGATCGTAGGGTCTAC
Left flanking sequence: Indices 20314 -- 20813
ACGCTGGGTGGACACAAGCCCGTAACCGCAAAAACGTTCTATTTTGCCTCAAGCGTTAGCTGTGT
CATTAACCGTTTTAGTCAGACGAAGAAACGGGCAGACATACGAAATGGTGTGATTTGGGTACTAG
AATGCTAAGGTTAGCCTTGACGAGCATTTTTGGTGTATGTGCCAAAACAATAAACTCTCCAACAG
AAGACCGTCTCGTTTTACGCCTCCTCTTTCCACCCCCTTCTTCCCCTCTACGATGGTATACTATC
ACGTGCTCTTTCGTAAATACGAGGAACCGTGCAGATTAAGCCCTGCACCGGGACGGATCGGGACA
TTTGGAACAGCGAGAAGTGCGGCGACGTGGAGGAATCGCCAGTGGTTCTGTCATTGTTACACCCG
TGTTGGGTACTCACCGGACGCACAGCATGTTGTCGCGATTTAGCACGACTAATGGGTCTACTAAA
ACAGTTTTGGTAGTTAGTTCTTAAGGGTCCTTCGTTGCAGTTTTG
Right flanking sequence: Indices 20884 -- 21383
TCAATGTTTATTTCTTCACAACCCGAGACGAGACACTCGTATTTAAAACCGAGTTCTACCAGTTT
CTCAAACCACTCTAAACCGATCCATTCTCTCTGAATGACTAAACCTAAAATGTATTATCAGCTGA
TCAGCAGACTAAACGGTCAGAAGTCATAAGGAAGCCCTCAAACCACAATCATGGTCACACTACTC
CACCGAACAGCCCTGTTTGCGACCAGCCTACCTGAACCCGAGAACCATGGCCAGACTCCAGAAAC
CAAACCCTCCAGAGAACACCACTACATCCGCAGACCCCCTACTGCGTTCAGATTCTTTTCTCTCT
TCTTTTCTCTCTCCCTTTCTTTCTTCCTTTCTCTCATCTTTTCTCTCTTCTTTTCTCTCTTTTCT
CTCTTCTTTTCTCTCTACTTTTCTCTATTTCTTCTTCCTATTAACCTAAAAGAGACTCCTCTTCC
TCGCCCGTGCCCGAGTTGTGCCGCGACCCCTGCTTCAGCTTGCGC
Found at i:21213 original size:12 final size:12
Alignment explanation
Indices: 21196--21299 Score: 133
Period size: 12 Copynumber: 8.9 Consensus size: 12
21186 TGCGTTCAGA
21196 TTCTTTTCTCTC
1 TTCTTTTCTCTC
21208 TTCTTTTCTCTC
1 TTCTTTTCTCTC
* * *
21220 TCCCTTTCTTTC
1 TTCTTTTCTCTC
*
21232 TTCCTTTCTCTC
1 TTCTTTTCTCTC
*
21244 ATCTTTTCTCTC
1 TTCTTTTCTCTC
21256 TTC-TTT-TCTC
1 TTCTTTTCTCTC
21266 -TCTTTTCTCTC
1 TTCTTTTCTCTC
21277 TTCTTTTCTCTC
1 TTCTTTTCTCTC
*
21289 TACTTTTCTCT
1 TTCTTTTCTCT
21300 ATTTCTTCTT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
9 2 0.03
10 7 0.09
11 7 0.09
12 64 0.80
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (12 bp):
TTCTTTTCTCTC
Left flanking sequence: Indices 20696 -- 21195
TACACCCGTGTTGGGTACTCACCGGACGCACAGCATGTTGTCGCGATTTAGCACGACTAATGGGT
CTACTAAAACAGTTTTGGTAGTTAGTTCTTAAGGGTCCTTCGTTGCAGTTTTGTTGATTGTAGGG
TCTATTGATCGTAGGGTCTACTTGATTGTAGGGTCTACTTAACCGTAGGGTCTACTTGTCAATGT
TTATTTCTTCACAACCCGAGACGAGACACTCGTATTTAAAACCGAGTTCTACCAGTTTCTCAAAC
CACTCTAAACCGATCCATTCTCTCTGAATGACTAAACCTAAAATGTATTATCAGCTGATCAGCAG
ACTAAACGGTCAGAAGTCATAAGGAAGCCCTCAAACCACAATCATGGTCACACTACTCCACCGAA
CAGCCCTGTTTGCGACCAGCCTACCTGAACCCGAGAACCATGGCCAGACTCCAGAAACCAAACCC
TCCAGAGAACACCACTACATCCGCAGACCCCCTACTGCGTTCAGA
Right flanking sequence: Indices 21300 -- 21799
ATTTCTTCTTCCTATTAACCTAAAAGAGACTCCTCTTCCTCGCCCGTGCCCGAGTTGTGCCGCGA
CCCCTGCTTCAGCTTGCGCTTCTTCAGCCGCTTCTTCTTCTTCTTCACCTCGGGCAGCGCCGGCA
CAGAAAACTCGTCGTCGTCGTGCGGCTCTTCCTCCAGCACGTTCTCAATGACAATCTTGTGCACG
CCGTCGACGTTCACCACCAGCTCAACAATGCCACCGGTGCGGTAGGAGTGCTCCTCCGACGTCTT
GCGCCCGATGGGGATCCCCCGCGGCAGGAGGTTGTCCTCGCTGAGCGCGTGCAACTCCGACCCGG
CCAGGGTCCCGATGTTCGCCGGGGTGTTGTCCTGGGCCAGATTGAGCTCCGCCTGGTGGATGGCC
GCGGCCTCCAGCGTGTGCACGTCGTTGAAGTTGGTGGTCAACGGCTTCTTGACCGGCGGCAACAC
CGGCTGGCGCTTGATGGTGACAAACAGCTTGTTGGTCTCGAGCGG
Found at i:24335 original size:19 final size:19
Alignment explanation
Indices: 24311--24383 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
24301 CTAGACACAA
*
24311 TAGATAGTGGTTGTTAGAG
1 TAGATAGTGATTGTTAGAG
*
24330 TAGATAGTGATTGTCAGAG
1 TAGATAGTGATTGTTAGAG
* *
24349 TAGATAGTCATTGTTAAAG
1 TAGATAGTGATTGTTAGAG
*
24368 TAGATAGTCATTGTTA
1 TAGATAGTGATTGTTA
24384 CAGGCGATGA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (19 bp):
TAGATAGTGATTGTTAGAG
Left flanking sequence: Indices 23811 -- 24310
AGGAAAACAGGGGCAGCGGCAGGTGGAAACGCAAAAGAAGCCCGACGGATGCAACCAGGGGTCCA
CCAGAGCCCCCCGAAGGTGTCTACACTGCTCCGAGCCCGTTCCCACGGGTTTACCGCGGCCTGTA
GCCCGTGTCGGCTGCGAAAAATGTCTGCCGAGGATCGAGGATAGTCTCGCATATTCGGGTAACAA
TAAGCACGGGGGAACACGTGTAGCTCTCGACAAAGAGCCGGTGTCCACCTTCCGCCAGGGTCGCC
TCAGCTGCATCGAGCAACCCAGGCGACACCCAAGCAACCGGAAGGGGCGCTGCAAGTTGTGTATA
GACGGCTTGGCATCGCCGTTGCTACGGTGCGAATGGGCAGCACCACCACGGATTGTTCCATGCAG
CGAACACCGTTGCCGGCGCGGGTGGCAGGTGGATGCAGACGGGAGGGCGGATATGTACGACTAGT
GGTTGCATCGATGGCGATTGATTTGAATCTATAAACTAGACACAA
Right flanking sequence: Indices 24384 -- 24883
CAGGCGATGATTGGAAAAGTATATTAGGAGGGATGGATGGTGAAGTGACTCCGGATCAAGTAGAG
TGGAGAGTCACGGTTAAAAGACGCTACGTACCACAGTCGTACCACTAACGAAGGCGGGTACACAC
CGCAGGATTGATCAGACACAATGCAGCTGCATTGTAAACGATCTATAAGCCACTTAAGTAGGATG
TGGCTGCAAAGTACACAAGATTGCTTATAGGGTTGGACCCAAGCTTTGTAGAGTTTGTAGCTGTC
AGGCCAACTAAGGATTGTAGATGATCTAAAAGCCACTATAGTAGGAATGCTTGTGGCTGCAAAAT
ATACAACATCCCCTACTTACAAGATTTGACCCAGACCTAGGGTTGGACCCAGGCCTATAGGGTTG
GACCCAGGCCTGTAGAGTTGGTAACTGTCAGGCCAACTAAGTCATACGGCTATACCATTCTTAAA
CGGCCTAACTTGACACATGCAACCTATTAACCGAGAGTAGTTCTG
Found at i:24759 original size:18 final size:19
Alignment explanation
Indices: 24736--24780 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
24726 TACAAGATTT
24736 GACCCAGACC-TAGGGTTG
1 GACCCAGACCATAGGGTTG
*
24754 GACCCAGGCCTATAGGGTTG
1 GACCCAGACC-ATAGGGTTG
24774 GACCCAG
1 GACCCAG
24781 GCCTGTAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 9 0.38
20 15 0.62
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.16
Consensus pattern (19 bp):
GACCCAGACCATAGGGTTG
Left flanking sequence: Indices 24236 -- 24735
CAGACGGGAGGGCGGATATGTACGACTAGTGGTTGCATCGATGGCGATTGATTTGAATCTATAAA
CTAGACACAATAGATAGTGGTTGTTAGAGTAGATAGTGATTGTCAGAGTAGATAGTCATTGTTAA
AGTAGATAGTCATTGTTACAGGCGATGATTGGAAAAGTATATTAGGAGGGATGGATGGTGAAGTG
ACTCCGGATCAAGTAGAGTGGAGAGTCACGGTTAAAAGACGCTACGTACCACAGTCGTACCACTA
ACGAAGGCGGGTACACACCGCAGGATTGATCAGACACAATGCAGCTGCATTGTAAACGATCTATA
AGCCACTTAAGTAGGATGTGGCTGCAAAGTACACAAGATTGCTTATAGGGTTGGACCCAAGCTTT
GTAGAGTTTGTAGCTGTCAGGCCAACTAAGGATTGTAGATGATCTAAAAGCCACTATAGTAGGAA
TGCTTGTGGCTGCAAAATATACAACATCCCCTACTTACAAGATTT
Right flanking sequence: Indices 24781 -- 25280
GCCTGTAGAGTTGGTAACTGTCAGGCCAACTAAGTCATACGGCTATACCATTCTTAAACGGCCTA
ACTTGACACATGCAACCTATTAACCGAGAGTAGTTCTGACAACTAGAATTTTTCACCACTGGAAC
TTTTCACCAACCTCCAGGGCCACTTTCGCAAAGCTTCCACTCGCAAAGCTCCACTCGTAAAGCTT
CTACTCGCAAAGGTTTTTTCGTCACAAACCACCTGGTGCTCCTGGTCCTACACTTTTCTAAATGC
AATCTATTGGTACTGCTAGGTAAAATCAAACGTAAATCAAACGGAAATCAAGCAAAGTCAAAACG
CCTAAATCAAAAGAGCAACCCCGGCCACAGCCACAGCACCGGCCGCAGCACGCACACCAACAGCC
CCGTTGGCTCTGGCGTAGAGCTCGGGCGACACCACCATCAGTGGCATCTCCTCGAGGTCACGCTT
GCCCTTGAACCACCCGGAGATGGTGTCGACAATCCCGTCCCACCA
Found at i:24771 original size:20 final size:20
Alignment explanation
Indices: 24746--24794 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
24736 GACCCAGACC
24746 TAGGGTTGGACCCAGGCCTA
1 TAGGGTTGGACCCAGGCCTA
*
24766 TAGGGTTGGACCCAGGCCTG
1 TAGGGTTGGACCCAGGCCTA
*
24786 TAGAGTTGG
1 TAGGGTTGG
24795 TAACTGTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.20, G:0.39, T:0.22
Consensus pattern (20 bp):
TAGGGTTGGACCCAGGCCTA
Left flanking sequence: Indices 24246 -- 24745
GGCGGATATGTACGACTAGTGGTTGCATCGATGGCGATTGATTTGAATCTATAAACTAGACACAA
TAGATAGTGGTTGTTAGAGTAGATAGTGATTGTCAGAGTAGATAGTCATTGTTAAAGTAGATAGT
CATTGTTACAGGCGATGATTGGAAAAGTATATTAGGAGGGATGGATGGTGAAGTGACTCCGGATC
AAGTAGAGTGGAGAGTCACGGTTAAAAGACGCTACGTACCACAGTCGTACCACTAACGAAGGCGG
GTACACACCGCAGGATTGATCAGACACAATGCAGCTGCATTGTAAACGATCTATAAGCCACTTAA
GTAGGATGTGGCTGCAAAGTACACAAGATTGCTTATAGGGTTGGACCCAAGCTTTGTAGAGTTTG
TAGCTGTCAGGCCAACTAAGGATTGTAGATGATCTAAAAGCCACTATAGTAGGAATGCTTGTGGC
TGCAAAATATACAACATCCCCTACTTACAAGATTTGACCCAGACC
Right flanking sequence: Indices 24795 -- 25294
TAACTGTCAGGCCAACTAAGTCATACGGCTATACCATTCTTAAACGGCCTAACTTGACACATGCA
ACCTATTAACCGAGAGTAGTTCTGACAACTAGAATTTTTCACCACTGGAACTTTTCACCAACCTC
CAGGGCCACTTTCGCAAAGCTTCCACTCGCAAAGCTCCACTCGTAAAGCTTCTACTCGCAAAGGT
TTTTTCGTCACAAACCACCTGGTGCTCCTGGTCCTACACTTTTCTAAATGCAATCTATTGGTACT
GCTAGGTAAAATCAAACGTAAATCAAACGGAAATCAAGCAAAGTCAAAACGCCTAAATCAAAAGA
GCAACCCCGGCCACAGCCACAGCACCGGCCGCAGCACGCACACCAACAGCCCCGTTGGCTCTGGC
GTAGAGCTCGGGCGACACCACCATCAGTGGCATCTCCTCGAGGTCACGCTTGCCCTTGAACCACC
CGGAGATGGTGTCGACAATCCCGTCCCACCAGTTGCCAGAGCTGC
Found at i:24965 original size:14 final size:15
Alignment explanation
Indices: 24936--24987 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
24926 AGGGCCACTT
24936 TCGCAAAGCTTCCAC
1 TCGCAAAGCTTCCAC
24951 TCGCAAAGC-TCCAC
1 TCGCAAAGCTTCCAC
* *
24965 TCGTAAAGCTTCTAC
1 TCGCAAAGCTTCCAC
24980 TCGCAAAG
1 TCGCAAAG
24988 GTTTTTTCGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 13 0.39
15 20 0.61
ACGTcount: A:0.29, C:0.35, G:0.15, T:0.21
Consensus pattern (15 bp):
TCGCAAAGCTTCCAC
Left flanking sequence: Indices 24436 -- 24935
GGATCAAGTAGAGTGGAGAGTCACGGTTAAAAGACGCTACGTACCACAGTCGTACCACTAACGAA
GGCGGGTACACACCGCAGGATTGATCAGACACAATGCAGCTGCATTGTAAACGATCTATAAGCCA
CTTAAGTAGGATGTGGCTGCAAAGTACACAAGATTGCTTATAGGGTTGGACCCAAGCTTTGTAGA
GTTTGTAGCTGTCAGGCCAACTAAGGATTGTAGATGATCTAAAAGCCACTATAGTAGGAATGCTT
GTGGCTGCAAAATATACAACATCCCCTACTTACAAGATTTGACCCAGACCTAGGGTTGGACCCAG
GCCTATAGGGTTGGACCCAGGCCTGTAGAGTTGGTAACTGTCAGGCCAACTAAGTCATACGGCTA
TACCATTCTTAAACGGCCTAACTTGACACATGCAACCTATTAACCGAGAGTAGTTCTGACAACTA
GAATTTTTCACCACTGGAACTTTTCACCAACCTCCAGGGCCACTT
Right flanking sequence: Indices 24988 -- 25487
GTTTTTTCGTCACAAACCACCTGGTGCTCCTGGTCCTACACTTTTCTAAATGCAATCTATTGGTA
CTGCTAGGTAAAATCAAACGTAAATCAAACGGAAATCAAGCAAAGTCAAAACGCCTAAATCAAAA
GAGCAACCCCGGCCACAGCCACAGCACCGGCCGCAGCACGCACACCAACAGCCCCGTTGGCTCTG
GCGTAGAGCTCGGGCGACACCACCATCAGTGGCATCTCCTCGAGGTCACGCTTGCCCTTGAACCA
CCCGGAGATGGTGTCGACAATCCCGTCCCACCAGTTGCCAGAGCTGCCACCCTGGTTCTGGTTCT
CGCCAGCACCCCCGGTGGGAGTGGCCTCGTCCTCGTCGCAGTCCAACGACTCCGAGGGCTGGGGA
CCCGAGGTGGGCTGGGGGCCGTTCAGAGTGGGCTGGGGACCGTTCAGAGTGGGCTGGGGACCGTT
CAGGGTGGGCTGGGGACCAGAAGAAGGCTGGGGAGCCGCGGTAGT
Found at i:25410 original size:21 final size:21
Alignment explanation
Indices: 25384--25460 Score: 136
Period size: 21 Copynumber: 3.7 Consensus size: 21
25374 GGGACCCGAG
*
25384 GTGGGCTGGGGGCCGTTCAGA
1 GTGGGCTGGGGACCGTTCAGA
25405 GTGGGCTGGGGACCGTTCAGA
1 GTGGGCTGGGGACCGTTCAGA
*
25426 GTGGGCTGGGGACCGTTCAGG
1 GTGGGCTGGGGACCGTTCAGA
25447 GTGGGCTGGGGACC
1 GTGGGCTGGGGACC
25461 AGAAGAAGGC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.10, C:0.19, G:0.52, T:0.18
Consensus pattern (21 bp):
GTGGGCTGGGGACCGTTCAGA
Left flanking sequence: Indices 24884 -- 25383
ACAACTAGAATTTTTCACCACTGGAACTTTTCACCAACCTCCAGGGCCACTTTCGCAAAGCTTCC
ACTCGCAAAGCTCCACTCGTAAAGCTTCTACTCGCAAAGGTTTTTTCGTCACAAACCACCTGGTG
CTCCTGGTCCTACACTTTTCTAAATGCAATCTATTGGTACTGCTAGGTAAAATCAAACGTAAATC
AAACGGAAATCAAGCAAAGTCAAAACGCCTAAATCAAAAGAGCAACCCCGGCCACAGCCACAGCA
CCGGCCGCAGCACGCACACCAACAGCCCCGTTGGCTCTGGCGTAGAGCTCGGGCGACACCACCAT
CAGTGGCATCTCCTCGAGGTCACGCTTGCCCTTGAACCACCCGGAGATGGTGTCGACAATCCCGT
CCCACCAGTTGCCAGAGCTGCCACCCTGGTTCTGGTTCTCGCCAGCACCCCCGGTGGGAGTGGCC
TCGTCCTCGTCGCAGTCCAACGACTCCGAGGGCTGGGGACCCGAG
Right flanking sequence: Indices 25461 -- 25960
AGAAGAAGGCTGGGGAGCCGCGGTAGTGGGCTTGGGAGCAGGAGCAGAGGTGGGCTGGGGAGCGG
TGGGCTGGGGAGCCTCCTCGTCGTCGTCGCACTCCCACTCGTCGGTGGGCTGGGGCTGGGGCGAA
GGGTTGGAGCCACTCGGCTTGCAGTTGACCTTGAAAATAAGACAGGTACCCCCCTGGATGACCTG
GGTGACTCCGTTGAGGATGCCTCCGAAGAGCGAGGCCTCGGCTTGCACCACCAACGCGAGGAAAA
AGTAGGAAAGCAAGCTAAACGCCTTCATTGTCGAGTGGAGAGCAGAATTACAAGGATCTCGGCTA
GTTATATACAACGGCGGGGTGCCCCTGATAATTAGAGTTGGCCGGTGTGCCTAGGTAACCCCGGA
TCGCGCGTATTTCCTAATCGGGAAGGCAAGCTGGAGCCAGGTGGTGGGTGCGACTGCTACGGTCA
CTCCCACGGTGTACTTGTACATTCGTCCCATCAACTGATACCCCA
Found at i:25529 original size:15 final size:15
Alignment explanation
Indices: 25509--25538 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25499 CAGGAGCAGA
25509 GGTGGGCTGGGGAGC
1 GGTGGGCTGGGGAGC
25524 GGTGGGCTGGGGAGC
1 GGTGGGCTGGGGAGC
25539 CTCCTCGTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.67, T:0.13
Consensus pattern (15 bp):
GGTGGGCTGGGGAGC
Left flanking sequence: Indices 25009 -- 25508
TGGTGCTCCTGGTCCTACACTTTTCTAAATGCAATCTATTGGTACTGCTAGGTAAAATCAAACGT
AAATCAAACGGAAATCAAGCAAAGTCAAAACGCCTAAATCAAAAGAGCAACCCCGGCCACAGCCA
CAGCACCGGCCGCAGCACGCACACCAACAGCCCCGTTGGCTCTGGCGTAGAGCTCGGGCGACACC
ACCATCAGTGGCATCTCCTCGAGGTCACGCTTGCCCTTGAACCACCCGGAGATGGTGTCGACAAT
CCCGTCCCACCAGTTGCCAGAGCTGCCACCCTGGTTCTGGTTCTCGCCAGCACCCCCGGTGGGAG
TGGCCTCGTCCTCGTCGCAGTCCAACGACTCCGAGGGCTGGGGACCCGAGGTGGGCTGGGGGCCG
TTCAGAGTGGGCTGGGGACCGTTCAGAGTGGGCTGGGGACCGTTCAGGGTGGGCTGGGGACCAGA
AGAAGGCTGGGGAGCCGCGGTAGTGGGCTTGGGAGCAGGAGCAGA
Right flanking sequence: Indices 25539 -- 26038
CTCCTCGTCGTCGTCGCACTCCCACTCGTCGGTGGGCTGGGGCTGGGGCGAAGGGTTGGAGCCAC
TCGGCTTGCAGTTGACCTTGAAAATAAGACAGGTACCCCCCTGGATGACCTGGGTGACTCCGTTG
AGGATGCCTCCGAAGAGCGAGGCCTCGGCTTGCACCACCAACGCGAGGAAAAAGTAGGAAAGCAA
GCTAAACGCCTTCATTGTCGAGTGGAGAGCAGAATTACAAGGATCTCGGCTAGTTATATACAACG
GCGGGGTGCCCCTGATAATTAGAGTTGGCCGGTGTGCCTAGGTAACCCCGGATCGCGCGTATTTC
CTAATCGGGAAGGCAAGCTGGAGCCAGGTGGTGGGTGCGACTGCTACGGTCACTCCCACGGTGTA
CTTGTACATTCGTCCCATCAACTGATACCCCAATTTCGCTCCACTTAGCTGATTACTCGATGTCA
AGCATTTGAGTAATCGCCATTTCGATTTCGAGCGGGTTCTTCCGC
Found at i:28720 original size:24 final size:23
Alignment explanation
Indices: 28692--29171 Score: 282
Period size: 24 Copynumber: 20.0 Consensus size: 23
28682 AACATTACTG
*
28692 GCGACAACTCTGCTACCAACACT
1 GCGACAACACTGCTACCAACACT
28715 GACGACAACACTGCTACCAACACT
1 G-CGACAACACTGCTACCAACACT
* *
28739 GGTGACAACTCTGCTACCAACACT
1 -GCGACAACACTGCTACCAACACT
* * *
28763 GGTGATAACACTGAC-AACAACACT
1 -GCGACAACACTG-CTACCAACACT
* * *
28787 GCTACCAACACTGGTGA-CAACTCT
1 GCGA-CAACACTGCT-ACCAACACT
* *
28811 GCTACCAACACTGGTGA-CAACACT
1 GCGA-CAACACTGCT-ACCAACACT
28835 GACGACAACACTGCTACCAACACT
1 G-CGACAACACTGCTACCAACACT
*
28859 GACGACAACACTGACGA-CAACACT
1 G-CGACAACACTG-CTACCAACACT
* * *
28883 GCTACCAACACTGGTGA-CAACTCT
1 GCGA-CAACACTGCT-ACCAACACT
* *
28907 GCTACCAACACTGGTGA-CAACACT
1 GCGA-CAACACTGCT-ACCAACACT
*
28931 GACGACAACTCTGCTACCAACACT
1 G-CGACAACACTGCTACCAACACT
* *
28955 GGTGACAACTCTGCTACCAACACT
1 -GCGACAACACTGCTACCAACACT
* * *
28979 GGTGACAACACTGACGA-CAACTCT
1 -GCGACAACACTG-CTACCAACACT
* *
29003 GCTACCAACACTGACGA-CAACACT
1 GCGA-CAACACTG-CTACCAACACT
* * *
29027 GCTACCAACACTGGTGA-CAACTCT
1 GCGA-CAACACTGCT-ACCAACACT
* *
29051 GCTACCAACACTGGTGA-CAACACT
1 GCGA-CAACACTGCT-ACCAACACT
*
29075 GACGACAACACTGCTGCCAACACT
1 G-CGACAACACTGCTACCAACACT
* *
29099 GGTGACAACACTGACGA-CAACACT
1 -GCGACAACACTG-CTACCAACACT
* *
29123 GCTACCAACACTGGTGA-CAACACT
1 GCGA-CAACACTGCT-ACCAACACT
29147 GACGACAACACTGCTACCAACACT
1 G-CGACAACACTGCTACCAACACT
29171 G
1 G
29172 GTTACGAAAG
Statistics
Matches: 386, Mismatches: 46, Indels: 49
0.80 0.10 0.10
Matches are distributed among these distances:
23 12 0.03
24 356 0.92
25 18 0.05
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (23 bp):
GCGACAACACTGCTACCAACACT
Left flanking sequence: Indices 28192 -- 28691
CGACCCTCGTAGTGGTATGGTGTACATTTACACTGACTTGTTCAAGTGGGTCTACGTCCAGTTCC
ACATTGGTACTGGCTACGATGTGACCAAGTTCAAGCTCGACACTGTCAACTTGGGCGGTATCAAG
ATTTACCACAACGCCCTTAGATACTGGGGTCCTATTCCCAGCGGTGCTAACGAGCCCCCCAAGTA
CTGCAACCTCAAGTGCATTATGGAGCCTTCCCAACCCGACACCGGCTCTTCTAGTACGCTGTCCA
CCCTTCAGACCACGGCCACTGCTGTCCCCACTACATCGATTCCAACCTCGTTGACTGATGCCACT
ACCTCTTCTACTAGTACCATCGTGACCTCGAACACTGAAGTTAGCTCTTCCTTCAGCACGGGCAT
TGAACTCTCTTCCACTGAAACCACAAACGACGAGACCACCGCCAGCAATGTCAGCACCTCTGGTG
AAGACACTGCCACTAACTCTGCCTCTAACACCGGAAACATTACTG
Right flanking sequence: Indices 29172 -- 29671
GTTACGAAAGCAGTGCCACAAACACTGGCGGTGACACTACCTCCACCACTGAGTACACTACTAGT
ACCTCCACTTATATCCCCACTCTCCTGGCTCTGACTACAGAGCCCCTTCCCACTGACTGCTACAC
CGTTACAGTCACCACCGTCGTTACCCCGACTGTGTATCTCAACGTTTCTCCTGTGATATAACGTG
TTTTCGATGTTTTCCCGTAAGGGCTAAACCTTTTTTCTGTTCTTTTTCCTTTTTTCGTCGGGCCC
TCTTTTGGCACCCTCTTCTATAGGGCAAATAGGTAAACTCATACAATGGCTGTTTAACCTGGTTT
GTTTGGAGATGTAGTGAGGTTCCTTACGCGGATTACACCTGCAAATTCTCGGACATCAATTGACT
AAGCAAGGCTTTTCTCTCGAAAATACGGATAATTGGAACCGTGTAAGCACCATACAATATTAATG
TCTACAAACTTGGTCTCGAAAGGGGTAAAAATATTCTTAAGCCCT
Found at i:28773 original size:36 final size:36
Alignment explanation
Indices: 28732--29173 Score: 440
Period size: 36 Copynumber: 12.9 Consensus size: 36
28722 ACACTGCTAC
** *
28732 CAACACTGGTGACAACTCTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
* *
28768 TAACACTGACAACAACACTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
28804 C-A-ACT----------CTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
**
28828 CAACACTGACGACAACACTGCTACCAACACTGACGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
28864 CAACACTGACGACAACACTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
28900 C-A-ACT----------CTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
*
28924 CAACACTGACGACAACTCTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
* * * **
28960 CAACTCTG-CTACCAACACTGGTGA-CAACACTGACGA
1 CAACACTGACGA-CAACACTGCT-ACCAACACTGGTGA
* * *
28996 CAACTCTG-CTACCAACACTG--ACGACAACACTGCT-A
1 CAACACTGACGA-CAACACTGCTAC--CAACACTGGTGA
** *
29031 CCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
1 -CAACACTGACGACAACACTGCTACCAACACTGGTGA
*
29068 CAACACTGACGACAACACTGCTGCCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
29104 CAACACTGACGACAACACTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGA
29140 CAACACTGACGACAACACTGCTACCAACACTGGT
1 CAACACTGACGACAACACTGCTACCAACACTGGT
29174 TACGAAAGCA
Statistics
Matches: 344, Mismatches: 28, Indels: 68
0.78 0.06 0.15
Matches are distributed among these distances:
24 40 0.12
25 2 0.01
26 6 0.02
33 1 0.00
34 6 0.02
35 5 0.01
36 279 0.81
37 3 0.01
38 2 0.01
ACGTcount: A:0.34, C:0.33, G:0.16, T:0.16
Consensus pattern (36 bp):
CAACACTGACGACAACACTGCTACCAACACTGGTGA
Left flanking sequence: Indices 28232 -- 28731
TTCAAGTGGGTCTACGTCCAGTTCCACATTGGTACTGGCTACGATGTGACCAAGTTCAAGCTCGA
CACTGTCAACTTGGGCGGTATCAAGATTTACCACAACGCCCTTAGATACTGGGGTCCTATTCCCA
GCGGTGCTAACGAGCCCCCCAAGTACTGCAACCTCAAGTGCATTATGGAGCCTTCCCAACCCGAC
ACCGGCTCTTCTAGTACGCTGTCCACCCTTCAGACCACGGCCACTGCTGTCCCCACTACATCGAT
TCCAACCTCGTTGACTGATGCCACTACCTCTTCTACTAGTACCATCGTGACCTCGAACACTGAAG
TTAGCTCTTCCTTCAGCACGGGCATTGAACTCTCTTCCACTGAAACCACAAACGACGAGACCACC
GCCAGCAATGTCAGCACCTCTGGTGAAGACACTGCCACTAACTCTGCCTCTAACACCGGAAACAT
TACTGGCGACAACTCTGCTACCAACACTGACGACAACACTGCTAC
Right flanking sequence: Indices 29174 -- 29673
TACGAAAGCAGTGCCACAAACACTGGCGGTGACACTACCTCCACCACTGAGTACACTACTAGTAC
CTCCACTTATATCCCCACTCTCCTGGCTCTGACTACAGAGCCCCTTCCCACTGACTGCTACACCG
TTACAGTCACCACCGTCGTTACCCCGACTGTGTATCTCAACGTTTCTCCTGTGATATAACGTGTT
TTCGATGTTTTCCCGTAAGGGCTAAACCTTTTTTCTGTTCTTTTTCCTTTTTTCGTCGGGCCCTC
TTTTGGCACCCTCTTCTATAGGGCAAATAGGTAAACTCATACAATGGCTGTTTAACCTGGTTTGT
TTGGAGATGTAGTGAGGTTCCTTACGCGGATTACACCTGCAAATTCTCGGACATCAATTGACTAA
GCAAGGCTTTTCTCTCGAAAATACGGATAATTGGAACCGTGTAAGCACCATACAATATTAATGTC
TACAAACTTGGTCTCGAAAGGGGTAAAAATATTCTTAAGCCCTTT
Found at i:28783 original size:60 final size:60
Alignment explanation
Indices: 28708--29173 Score: 530
Period size: 60 Copynumber: 7.6 Consensus size: 60
28698 ACTCTGCTAC
28708 CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
* *
28768 TAACACTGACAACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
** * * *
28828 CAACACTGACGACAACACTGCTACCAACACTGACGACAACACTGACGA-CAACACTGCT-A
1 CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTG-CTACCAACACTGGTGA
** * * * * *
28887 CCAACACTGGTGACAACTCTGCTACCAACACTGGTGACAACACTGACGA-CAACTCTGCT-A
1 -CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTG-CTACCAACACTGGTGA
** * * * * *
28947 CCAACACTGGTGACAACTCTGCTACCAACACTGGTGACAACACTGACGA-CAACTCTGCT-A
1 -CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTG-CTACCAACACTGGTGA
29007 CCAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
1 -CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
*
29068 CAACACTGACGACAACACTGCTGCCAACACTGGTGACAACACTGACGACAACACTGCTACCAACA
1 CAACACTGACGACAACACTGCTACCAACACTGGTGAC-A-ACT----------CTGCTACCAACA
29133 CTGGTGA
54 CTGGTGA
29140 CAACACTGACGACAACACTGCTACCAACACTGGT
1 CAACACTGACGACAACACTGCTACCAACACTGGT
29174 TACGAAAGCA
Statistics
Matches: 366, Mismatches: 24, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
59 3 0.01
60 304 0.83
61 4 0.01
62 3 0.01
72 52 0.14
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (60 bp):
CAACACTGACGACAACACTGCTACCAACACTGGTGACAACTCTGCTACCAACACTGGTGA
Left flanking sequence: Indices 28208 -- 28707
ATGGTGTACATTTACACTGACTTGTTCAAGTGGGTCTACGTCCAGTTCCACATTGGTACTGGCTA
CGATGTGACCAAGTTCAAGCTCGACACTGTCAACTTGGGCGGTATCAAGATTTACCACAACGCCC
TTAGATACTGGGGTCCTATTCCCAGCGGTGCTAACGAGCCCCCCAAGTACTGCAACCTCAAGTGC
ATTATGGAGCCTTCCCAACCCGACACCGGCTCTTCTAGTACGCTGTCCACCCTTCAGACCACGGC
CACTGCTGTCCCCACTACATCGATTCCAACCTCGTTGACTGATGCCACTACCTCTTCTACTAGTA
CCATCGTGACCTCGAACACTGAAGTTAGCTCTTCCTTCAGCACGGGCATTGAACTCTCTTCCACT
GAAACCACAAACGACGAGACCACCGCCAGCAATGTCAGCACCTCTGGTGAAGACACTGCCACTAA
CTCTGCCTCTAACACCGGAAACATTACTGGCGACAACTCTGCTAC
Right flanking sequence: Indices 29174 -- 29673
TACGAAAGCAGTGCCACAAACACTGGCGGTGACACTACCTCCACCACTGAGTACACTACTAGTAC
CTCCACTTATATCCCCACTCTCCTGGCTCTGACTACAGAGCCCCTTCCCACTGACTGCTACACCG
TTACAGTCACCACCGTCGTTACCCCGACTGTGTATCTCAACGTTTCTCCTGTGATATAACGTGTT
TTCGATGTTTTCCCGTAAGGGCTAAACCTTTTTTCTGTTCTTTTTCCTTTTTTCGTCGGGCCCTC
TTTTGGCACCCTCTTCTATAGGGCAAATAGGTAAACTCATACAATGGCTGTTTAACCTGGTTTGT
TTGGAGATGTAGTGAGGTTCCTTACGCGGATTACACCTGCAAATTCTCGGACATCAATTGACTAA
GCAAGGCTTTTCTCTCGAAAATACGGATAATTGGAACCGTGTAAGCACCATACAATATTAATGTC
TACAAACTTGGTCTCGAAAGGGGTAAAAATATTCTTAAGCCCTTT
Done.