Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold83
Parameters: 2 7 7 80 10 50 500
Length:  72820

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4676--4794
6
18.8
6
76
16
98
0
0
47
52
1.06
4671--4792
14
8.8
14
90
4
194
0
0
47
51
1.06
17498--17740
39
6.2
39
89
0
342
10
36
30
23
1.88
17497--17740
78
3.1
78
95
0
425
10
36
29
23
1.88
17790--17868
33
2.4
33
84
0
113
13
31
34
20
1.92
25696--25728
12
2.6
13
85
9
50
18
48
6
27
1.71
31304--31342
12
3.2
12
96
0
69
15
12
33
38
1.85
33177--33230
21
2.6
21
90
0
81
24
44
25
5
1.75
37413--37447
12
2.9
12
86
0
52
5
40
2
51
1.40
39440--39478
15
2.4
17
83
16
55
33
0
58
7
1.26
39448--39510
15
4.4
15
86
11
87
31
0
60
7
1.26
39808--39842
16
2.2
16
90
10
54
20
45
17
17
1.85
44543--44585
15
2.6
17
89
7
63
16
41
16
25
1.88
44547--44585
17
2.5
15
87
8
51
15
41
15
28
1.87
45198--45238
10
4.1
10
100
0
82
19
60
9
9
1.55
45247--45311
13
4.8
13
71
22
53
46
52
1
0
1.10
45249--45309
10
5.9
10
83
12
79
49
49
1
0
1.10
45312--45343
12
2.7
12
100
0
64
25
68
6
0
1.12
45417--45447
16
1.9
16
100
0
62
19
48
12
19
1.81
47440--47479
18
2.2
18
86
8
55
45
40
15
0
1.46
52559--52589
11
2.8
11
100
0
62
9
45
35
9
1.70
53374--53410
17
2.2
17
100
0
74
32
0
45
21
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57942--57996
11
5.1
11
84
4
76
18
10
58
12
1.63
57951--57995
10
4.3
10
86
10
63
17
11
60
11
1.59
57942--57996
22
2.5
22
91
2
85
18
10
58
12
1.63
58039--58068
11
2.7
11
94
0
51
0
0
56
43
0.99
58076--58132
11
5.3
11
79
12
73
10
10
8
70
1.35
58349--58392
22
2.0
22
86
8
63
6
13
22
56
1.61
59152--59200
24
2.0
25
84
4
64
36
28
20
14
1.92
69406--69435
14
2.1
14
100
0
60
0
20
60
20
1.37
69786--69834
11
4.5
11
84
0
53
14
6
65
14
1.45
69782--69833
22
2.4
22
76
0
59
15
5
63
15
1.48
70553--70610
21
2.8
21
78
0
62
34
50
5
10
1.59
70687--70723
18
2.0
20
89
10
60
40
40
2
16
1.62
70814--70875
24
2.6
24
100
0
124
29
53
3
14
1.57
72728--72767
8
4.9
8
84
3
53
5
0
72
22
1.04
72749--72790
12
3.5
12
83
6
50
7
0
69
23
1.13

Tables:   1

The End!