Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold83
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 72820
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Found at i:4687 original size:6 final size:6
Alignment explanation
Indices: 4676--4794 Score: 98
Period size: 6 Copynumber: 18.8 Consensus size: 6
4666 TCTTATTGGT
* * *
4676 GTGTTG GTGTTG GTG-TG TTGTTG TTGGT- GTGTTG GTGTTGG TGTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG
*
4724 GTGTTGG TGTGTTG GTGTTGG TGTGTTG GTGTCGG TGTGTTG GTGTTG
1 GTGTT-G -GTGTTG GTGTT-G -GTGTTG GTGT-TG -GTGTTG GTGTTG
* *
4772 GTGTTG TTGTTG GTGTTG TTGTT
1 GTGTTG GTGTTG GTGTTG GTGTT
4795 TTTGTTGCTG
Statistics
Matches: 94, Mismatches: 9, Indels: 20
0.76 0.07 0.16
Matches are distributed among these distances:
5 7 0.07
6 60 0.64
7 8 0.09
8 19 0.20
ACGTcount: A:0.00, C:0.01, G:0.47, T:0.52
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 4176 -- 4675
TGCACCCTGCAAGTCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGAAAATC
AAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCATGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGAAGTCTCTCGGCTGGGTCATTATCC
GTTGGCGCTTCGCGCCATGGTAATGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACAGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTAGGGGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGTTTCGCTTCCTTTGCCATATGA
GAGACGATATCAGAAGTACTAGCGGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 4795 -- 5294
TTTGTTGCTGGTCGCTGTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCA
ATGGTATCCGATTCGATTCGTTGGATCGGGTGCTATTGGCGCCGTTTTTTCCCCCTGTTGGTGGT
GCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGAGGTA
GCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTTTGTAGTATATAGGATATGTACAG
GCTCGCTATAATCAACGCTTACTACGGTACCAACAGTAAAGTCACGTGACCCGGATCACACGACG
TGGAAGCCGCATTAGGCTATATAGCTCGTAAAGCGACTAACATAAGGTGTTATGTAATGCTCGTA
AAGTCTTCAGGAAATGAATGGTCATCGTATAGCTCGTCGTATAGTGGGGTGGTCGCTTGTTAGAG
GGGGCCGTTTTTACATGCAGACCTCTGAAATTTGTTAGAGGGGGC
Found at i:4690 original size:14 final size:14
Alignment explanation
Indices: 4671--4792 Score: 194
Period size: 14 Copynumber: 8.8 Consensus size: 14
4661 CCCCCTCTTA
4671 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
4685 TTGGTGTGTTGTTG
1 TTGGTGTGTTGGTG
4699 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
4713 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
4727 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
4741 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
4755 TCGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
4769 TT-G-GTGTTGTTG
1 TTGGTGTGTTGGTG
4781 TTGGTGTTGTTG
1 TTGGTG-TGTTG
4793 TTTTTGTTGC
Statistics
Matches: 100, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.10
13 2 0.02
14 83 0.83
15 5 0.05
ACGTcount: A:0.00, C:0.01, G:0.48, T:0.52
Consensus pattern (14 bp):
TTGGTGTGTTGGTG
Left flanking sequence: Indices 4171 -- 4670
TCGCTTGCACCCTGCAAGTCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAAAGA
AAATCAAAGAAGATGGGGGAAAAAAATCCCCCCAAGGAGGCTACAAAAGCTTGTCGTTAGCATGG
TGATACTTGCTCACCACAGCCTCGGTGCTGTTGGTACTTCTGATGAAGTCTCTCGGCTGGGTCAT
TATCCGTTGGCGCTTCGCGCCATGGTAATGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTT
ACTGGTGGCGTCGCGACCCACCAGCTACAGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGC
TTCTACTCGATGGCCGACGGGCCGGGAGGTAGGGGGTGCAATCTAGCGTCAGGATGGGCGGTATC
GCCACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGTTTCGCTTCCTTTGCCA
TATGAGAGACGATATCAGAAGTACTAGCGGTACCACCCCCTCTTA
Right flanking sequence: Indices 4793 -- 5292
TTTTTGTTGCTGGTCGCTGTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGT
CAATGGTATCCGATTCGATTCGTTGGATCGGGTGCTATTGGCGCCGTTTTTTCCCCCTGTTGGTG
GTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGAGG
TAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTTTGTAGTATATAGGATATGTAC
AGGCTCGCTATAATCAACGCTTACTACGGTACCAACAGTAAAGTCACGTGACCCGGATCACACGA
CGTGGAAGCCGCATTAGGCTATATAGCTCGTAAAGCGACTAACATAAGGTGTTATGTAATGCTCG
TAAAGTCTTCAGGAAATGAATGGTCATCGTATAGCTCGTCGTATAGTGGGGTGGTCGCTTGTTAG
AGGGGGCCGTTTTTACATGCAGACCTCTGAAATTTGTTAGAGGGG
Found at i:17541 original size:39 final size:39
Alignment explanation
Indices: 17498--17740 Score: 342
Period size: 39 Copynumber: 6.2 Consensus size: 39
17488 CTCTGCTGGT
* * * * * *
17498 GACGCTTCTGCCTCCGCCACTGAGTCTGGCGACGGTTCC
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
*
17537 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCT
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
* * *
17576 GACGCCTCTGGTTCTGCCACTGAGTCTGGTGACGGTTCC
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
*
17615 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCT
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
* * *
17654 GACGCCTCTGGCTCTGCCACCGAGTCTGGTGACGGTTCC
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
* *
17693 GACGCCTCTGGCTCTGCCACCGAGTCCGGTGACGGCTCT
1 GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
17732 GACGCCTCT
1 GACGCCTCT
17741 TCTACCGGCG
Statistics
Matches: 182, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 182 1.00
ACGTcount: A:0.10, C:0.36, G:0.30, T:0.23
Consensus pattern (39 bp):
GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCC
Left flanking sequence: Indices 16998 -- 17497
TACCCACAATGAAGTACCAATTGCTCGCTCTTGCTGCTGTTGCCCTCGCCGCTGACGGCGACTTT
GAGACCCGTAACCCCGAACAGATGTTGTCTTTCCTCCAGGAGAACACTGCTTCGATCCCCAGAGG
TTACTCTGACGTCTCCGCCTACATTACTGCCTACTCGAGATTGTACTCTGCCTACTCTGGTTCCA
TTCCCTTGAGAAACCAGGACGGTCAGAACGGTAACACCATCGGCGGTGGTGACGGTGACGACTCT
GGCTCTGGCTCTGGTGACGGCTCCGACGCCTCCTCTGACGTCGCTTCCGTTTCTGCCACCGCTAC
TGGCGGTGACGGCGACGACGCCTCCGAGACCGGTGCCTCTTCCACTGGTGACAACGACAACGACG
GTGACAACAACGGCGGTGCTGTTGGCGGTGCCGCCGGCTCTGGTGACAACGATGGTGACGACAAC
AACAACGACGGTGAGGACGGTGACAACGCCTCTGGCTCTGCTGGT
Right flanking sequence: Indices 17741 -- 18240
TCTACCGGCGACAACGACGGTGAGGAGGACGGTGCCGGTGGTGCTGGCTCTTCCGGTTCCGGTGA
CGGCGACGACTCCAAGGAGTCCGGCTCTGGTGACGGTGACGACTCCAAGGCTTCCGGCTCTGGCT
CTGGCTCTGGCTCCGACTCCAAGGAGTCTGGCGACAAGGGTGACGGTGACGACAAGTCTAAGTCT
TCTGACTCCGGCTCTAACTCGCTTGCTTACTCCGGTCTCTTCGCTGGTGTTGCCGTTCTTGGCGG
TCTCCTCATCTAAGAGTGCTAAAATTACGCTGTAGACGTTTATAATGTAATATCTAATAATGATT
TGAGTTAATTACTGGCGATTGTTCGCTTACTGTGGGAATTTTCGTTGACGCCTTCGCTGCAGCAT
TCGCGGCTAAATAATATTTCACACCGATGGTTGCTACTCAGTGCGACGATAAAAATAAGGGCCCA
GATAGTTGCCAATGCAATGGAACGCCTGTAATGGGCATAAATCTA
Found at i:17595 original size:78 final size:78
Alignment explanation
Indices: 17497--17740 Score: 425
Period size: 78 Copynumber: 3.1 Consensus size: 78
17487 GCTCTGCTGG
* * * *
17497 TGACGCTTCTGCCTCCGCCACTGAGTCTGGCGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
1 TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
17562 CCGGTGACGGCTC
66 CCGGTGACGGCTC
*
17575 TGACGCCTCTGGTTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
1 TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
17640 CCGGTGACGGCTC
66 CCGGTGACGGCTC
* *
17653 TGACGCCTCTGGCTCTGCCACCGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACCGAGT
1 TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
17718 CCGGTGACGGCTC
66 CCGGTGACGGCTC
17731 TGACGCCTCT
1 TGACGCCTCT
17741 TCTACCGGCG
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 158 1.00
ACGTcount: A:0.10, C:0.36, G:0.30, T:0.24
Consensus pattern (78 bp):
TGACGCCTCTGGCTCTGCCACTGAGTCTGGTGACGGTTCCGACGCCTCTGGCTCTGCCACTGAGT
CCGGTGACGGCTC
Left flanking sequence: Indices 16997 -- 17496
ATACCCACAATGAAGTACCAATTGCTCGCTCTTGCTGCTGTTGCCCTCGCCGCTGACGGCGACTT
TGAGACCCGTAACCCCGAACAGATGTTGTCTTTCCTCCAGGAGAACACTGCTTCGATCCCCAGAG
GTTACTCTGACGTCTCCGCCTACATTACTGCCTACTCGAGATTGTACTCTGCCTACTCTGGTTCC
ATTCCCTTGAGAAACCAGGACGGTCAGAACGGTAACACCATCGGCGGTGGTGACGGTGACGACTC
TGGCTCTGGCTCTGGTGACGGCTCCGACGCCTCCTCTGACGTCGCTTCCGTTTCTGCCACCGCTA
CTGGCGGTGACGGCGACGACGCCTCCGAGACCGGTGCCTCTTCCACTGGTGACAACGACAACGAC
GGTGACAACAACGGCGGTGCTGTTGGCGGTGCCGCCGGCTCTGGTGACAACGATGGTGACGACAA
CAACAACGACGGTGAGGACGGTGACAACGCCTCTGGCTCTGCTGG
Right flanking sequence: Indices 17741 -- 18240
TCTACCGGCGACAACGACGGTGAGGAGGACGGTGCCGGTGGTGCTGGCTCTTCCGGTTCCGGTGA
CGGCGACGACTCCAAGGAGTCCGGCTCTGGTGACGGTGACGACTCCAAGGCTTCCGGCTCTGGCT
CTGGCTCTGGCTCCGACTCCAAGGAGTCTGGCGACAAGGGTGACGGTGACGACAAGTCTAAGTCT
TCTGACTCCGGCTCTAACTCGCTTGCTTACTCCGGTCTCTTCGCTGGTGTTGCCGTTCTTGGCGG
TCTCCTCATCTAAGAGTGCTAAAATTACGCTGTAGACGTTTATAATGTAATATCTAATAATGATT
TGAGTTAATTACTGGCGATTGTTCGCTTACTGTGGGAATTTTCGTTGACGCCTTCGCTGCAGCAT
TCGCGGCTAAATAATATTTCACACCGATGGTTGCTACTCAGTGCGACGATAAAAATAAGGGCCCA
GATAGTTGCCAATGCAATGGAACGCCTGTAATGGGCATAAATCTA
Found at i:17866 original size:33 final size:33
Alignment explanation
Indices: 17790--17868 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
17780 GGTGCTGGCT
* *
17790 CTTCCGGTTCCGGTGACGGCGACGACTCCAAGG
1 CTTCCGGCTCTGGTGACGGCGACGACTCCAAGG
** *
17823 AGTCCGGCTCTGGTGACGGTGACGACTCCAAGG
1 CTTCCGGCTCTGGTGACGGCGACGACTCCAAGG
17856 CTTCCGGCTCTGG
1 CTTCCGGCTCTGG
17869 CTCTGGCTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20
Consensus pattern (33 bp):
CTTCCGGCTCTGGTGACGGCGACGACTCCAAGG
Left flanking sequence: Indices 17290 -- 17789
CTCTGACGTCGCTTCCGTTTCTGCCACCGCTACTGGCGGTGACGGCGACGACGCCTCCGAGACCG
GTGCCTCTTCCACTGGTGACAACGACAACGACGGTGACAACAACGGCGGTGCTGTTGGCGGTGCC
GCCGGCTCTGGTGACAACGATGGTGACGACAACAACAACGACGGTGAGGACGGTGACAACGCCTC
TGGCTCTGCTGGTGACGCTTCTGCCTCCGCCACTGAGTCTGGCGACGGTTCCGACGCCTCTGGCT
CTGCCACTGAGTCCGGTGACGGCTCTGACGCCTCTGGTTCTGCCACTGAGTCTGGTGACGGTTCC
GACGCCTCTGGCTCTGCCACTGAGTCCGGTGACGGCTCTGACGCCTCTGGCTCTGCCACCGAGTC
TGGTGACGGTTCCGACGCCTCTGGCTCTGCCACCGAGTCCGGTGACGGCTCTGACGCCTCTTCTA
CCGGCGACAACGACGGTGAGGAGGACGGTGCCGGTGGTGCTGGCT
Right flanking sequence: Indices 17869 -- 18368
CTCTGGCTCTGGCTCCGACTCCAAGGAGTCTGGCGACAAGGGTGACGGTGACGACAAGTCTAAGT
CTTCTGACTCCGGCTCTAACTCGCTTGCTTACTCCGGTCTCTTCGCTGGTGTTGCCGTTCTTGGC
GGTCTCCTCATCTAAGAGTGCTAAAATTACGCTGTAGACGTTTATAATGTAATATCTAATAATGA
TTTGAGTTAATTACTGGCGATTGTTCGCTTACTGTGGGAATTTTCGTTGACGCCTTCGCTGCAGC
ATTCGCGGCTAAATAATATTTCACACCGATGGTTGCTACTCAGTGCGACGATAAAAATAAGGGCC
CAGATAGTTGCCAATGCAATGGAACGCCTGTAATGGGCATAAATCTAAGCAGTGAATGTTTCTTT
GCCACAGGTGGGTGAAATCGAAAACAGAATTGAAGTGCTCCCCACACGTCAATTATGCGATCAAG
AGTTTTACGATTACACGAGATTAGGAGCACTGCACTTCTCGTAGT
Found at i:25728 original size:13 final size:13
Alignment explanation
Indices: 25696--25728 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
25686 CATCGGACCT
*
25696 CTATCCCAGCCTC
1 CTATTCCAGCCTC
25709 C-ATTCCAGCCTC
1 CTATTCCAGCCTC
25721 CTATTCCA
1 CTATTCCA
25729 CCGCCCCGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.18, C:0.48, G:0.06, T:0.27
Consensus pattern (13 bp):
CTATTCCAGCCTC
Left flanking sequence: Indices 25196 -- 25695
AAAACCGGGGTAGCGGTGTCTAGCCGTCGGCTAGTCTAACTTTATTGGTAGGGGTACATGCGTAA
CACCGCATGGTATGCATGGTGAGCCGAGAGGACGGGGATGACGATAGGCGTTGCAAGGGCACGTA
GGTGTATTGTTTTTGCTGGTGGGTCATCGGTGAGCCAGTGATCACTTGGGTTTGTTGAAGTAAAT
CTGAGGAGACAGCGATATTCGCAATACCACGGGAGCCAACGTGGTACGTCTGATAACGAGGAATT
TTGGGAGAGTGTCAAATTATCCAACAGTGCTTCCAGCTTTTACATGCTTACCCGCCACACATAGG
TGATCAATCTCGAGGCTTGCGAACAGTATGGTTGATCTAATGGCTTGCCAATTGTGTTCAACCTC
AATGCTACCCTTTGGTCGTGGCAATGGTACCCACCACATCATCACATCCTCTCGACCGTACTCAA
TTTTTGGCCCATCTCAACTACAAGCTTAGTGATACCATCGGACCT
Right flanking sequence: Indices 25729 -- 26228
CCGCCCCGTCGTCGTGTCTGCTCCCTTCCCCTTCTGCTCCTCCGGTAGCGCGACGGTTCATAACC
AGGCATCGTATGCACCAGACCACCAGCACGTCTCCAGAGAACCATGTTACGGATCCTGGTGCGGC
TAAAGTCGCTGAAAACCTCGTTCCTCCCGCCTGAACTCCGCCGTCTGGCCAAACGGCTTGACATC
GGGCCACTTCCCACCCCCACGAAACCCACGCCTTCCCCCCAACCCTCTGCTAAAGATGGGGCCCT
GAAGGTCGCTCTCGTCAAGGAGATCCTCGGGGAGGTCACTCTGTGGAAGAAGCCCGGCTACTACG
ACCCGGCCAACACCTCGTTGGATCTCACCCGCCCCAACCACGAGTTGTGGGACGACATCTACGCG
GGCCTGCTACAACGGTACCGTCTTCGGTACAAGCAGCCGTCCACCGAGTGGACCCGCCGGGCTGG
GGGTGTCCACACGGTGGAAGATCTCACCTCAGCTGTGTCGTCTGA
Found at i:31325 original size:12 final size:12
Alignment explanation
Indices: 31304--31342 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
31294 CTCTTAGGGA
*
31304 CTGAGCGTATGT
1 CTGAGTGTATGT
31316 CTGAGTGTATGT
1 CTGAGTGTATGT
31328 CTGAGTGTATGT
1 CTGAGTGTATGT
31340 CTG
1 CTG
31343 GCGTATGCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.15, C:0.13, G:0.33, T:0.38
Consensus pattern (12 bp):
CTGAGTGTATGT
Left flanking sequence: Indices 30804 -- 31303
AGGTGCGAGTATAAAAGAGGGGCGAATTTGCCAATTCTAGTTTTTTTTTCTTTGTCGATATACTC
TATGGGATCATTTTCTATAGTGAATATCTCTCTTTGACTCTATAAAAGAGCCACTGAACCCAACT
TGGTTGATGAGATAGATACCCTTGTGCCCTCAAAGTGAGAACGTTTTTGCTTGACCATGTGCTCC
TAGCAGCCTGGCCATCTCCAATTTGCCGAACACCACGGGCTGTCGCAAGACGGCCTAGTTCGGAG
CGATGATCTTTACCCCATTGCGTATGCTTCTTCGGGAGAAACGCTTTGGGGTGGGCGCAAGTGGC
TGTCTGACAAGCTGGGTTTAGCAAGAGAGACGATTGATGTTCGACCTTCTGGTTGTCCGCCTGGC
GGTGGCTAACCAGCAGATCAAACATGGTCTTGCCCACGTAGGAAACAAGAAAAAACATGGTGAAG
TGGTCGAGGTTGATGGTGGCGTGTAGTTGGTGGGGCTCTTAGGGA
Right flanking sequence: Indices 31343 -- 31842
GCGTATGCCGTGGTCGGCCTTGCGATGACCTGTTGATCCGAAAATGTCTTAACTCCGGAGTTGTT
CCGAAATGCTGTAACGTCTAGCTTGGAAGTGTTTTACCGAAACGGCCCGATAAAGTCTCAAATTG
TCCAAATTGTCCAAACAATCCAAATAGGCTTAACCGGTCTATGACTCGTAACCTGTAGCTCGTAA
CTCACTCTGTGACCTGTTCTGAACCGTCAGAGCCACCCAAAGCAGTACCCTCTACACCACACCAA
ACCGCATATATACCCCGATTACGCGCTTAGTCAACCCACCAGCACCGCCCGCGACCAGGGTGGCT
AGGGCCATCTGCGTCGCGTGCCCGCCTAGGACACATGCGCGCTTACTACAATGGCCCTAGCCACG
CTGGTCGCGGACGCTGCGCCCACCCCACACCCGCGCTCGGTCACCTTCCCTTCCGGGACACCTAG
GCGCTTAGTCACCGCCAAGCCCCCGTTACTAACATTACAAACGTG
Found at i:33203 original size:21 final size:21
Alignment explanation
Indices: 33177--33230 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
33167 GCCAGTTCCA
33177 GCCCGGCTACGACCAAAACCG
1 GCCCGGCTACGACCAAAACCG
* *
33198 GCCCGGCTACGACCAGACCCG
1 GCCCGGCTACGACCAAAACCG
*
33219 GCCCAGCTACGA
1 GCCCGGCTACGA
33231 GCGCAAGGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.44, G:0.26, T:0.06
Consensus pattern (21 bp):
GCCCGGCTACGACCAAAACCG
Left flanking sequence: Indices 32677 -- 33176
CTGTTTTTGCCCAAGAACATCGTGCTCCAGTTCACCAACGTGGCCAACTTCTACTTCCTTGTGTT
GATTATCTTGGGTGCCTTCACCATTTTCGGCGTCGACCTGCCTGGGTTGGCAGCAGTGCCGCTTA
TTGTCATTGTGTGTATTACGGCGGCCAAGGACGCCTTCGAGGACTACCGCCGGGCCCTGCTGGAC
TCCGAGCTCAACAACTCGCCCGTGCACCTCGTGGTGGGACTCGACAACGCCAACGTGGTCCACCT
CCCGCCCACCGCGCTCCAGAAGTTCAATCTGGCGCTCGGGAGCGTGTTTGCCGGGATGTGGCGCG
GGATCAAGCGTGCGTTCATCGCTGTGTTCTTCACCAAGGCCGCGAAGCAGAAGTTGCACGACCAG
GAGGTGGCCGACCACGACTTGGCCCTCCGGCGGGTGAGCACGGTGGAGTCGCGGGTGAGCCCACG
CGCGAGCTACGAGCGCAAGGACGCCAACCAGCCTGGCCAGTTCCA
Right flanking sequence: Indices 33231 -- 33730
GCGCAAGGCGTCGTCACCACTTCCCCACTACGAGACGGCCACCGACGCACTCAACCAGCCCGCCA
ACCGCGGAAGCGTGCTCCTGCCGCGCCACAGCGTCTACAGCCCGCGGCGGCTGCTCCAGCTGGCG
GCCCTGCGGCTCCACCCGACCCAGATCGTGCCCCACACCATCATCCTGCCCGAGTTGGTGCGGGA
CAACGGGGACGCGGGCAACGTGCTGAAGTTCAAGAACCGGCGGTGGAAGGACATCGAGGTGGGGT
CGTTTGTGCGGATCCGCGCCAACGAGGAGATGCCCGCGGACCTCATTTTGTTGTCGCTGTCGGAC
CCCGAGGGGGGCTGTCTGGTGGAAACAAAGAACTTGGACGGCGAAACCAACTTGAAGCCGCGCCA
GCTGGTGGCGTGCGGTGGCACCAGCGTCATCAAACGGCCCACCGACCTCGGCAACACCCGGTTCT
GGGTCGAGTGCGACGCACCCAACCTGCACTTGTACGAGTTCAAGG
Found at i:37430 original size:12 final size:12
Alignment explanation
Indices: 37413--37447 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
37403 ACTCCCCACC
*
37413 CTTCTCTTCATT
1 CTTCTCTTCACT
*
37425 CTTCTCTTCGCT
1 CTTCTCTTCACT
37437 CTTCTCTTCAC
1 CTTCTCTTCAC
37448 ACTCACTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.40, G:0.03, T:0.51
Consensus pattern (12 bp):
CTTCTCTTCACT
Left flanking sequence: Indices 36913 -- 37412
TTGCCGCAAGCAGACACGCTTATGAAATATCACTCTGCCACTTCGCGTCAACAAGTGGTTTAATT
GTTCGTCATTAATAAAAATAATAGATAGTGAAGGATGCGAGGTTCGAACTCGCGCGGACAAACGT
CCAACCGATCTTAAGTCGGTCGCCTTAGACCACTCGGCCAACCCTCCAAAACGCACGATTTTTGG
AAATTTTGGATATGTAGGGGTAGAGTAATGAAGGGGTCAGAGAAGTTTTTTTTTTGATCTCGCAA
TTGTATAAATTAGTTTTTGGTGTTTCAAATACCGTTAATAAGGCTATGGAGTATTTAAATGTAGC
AATTGCTCCACATATTGGCAATTCTACGTGGTTTCTCAAAATTTTGGCAAATCGATCGAGCCTAA
TAATTCCCCCAAATTTCACTCAAATCCTACAAAAATCTCCAACGCTCTGGTCACATTCTTAAACC
CTAGCAACTCTATAAATTCCAATACTAATACAATCACTCCCCACC
Right flanking sequence: Indices 37448 -- 37947
ACTCACTCTTCTTCGCAAAGAGCTTCGCGTTGGCCAAGAACTTCGCGAGATTGGGCTTGGCCACC
ACCGCCGCCACCTCGGGGAACTCGTAGCCCTCGTCGGTCTTCACCGGCTGCATCGCCGCAAGCCG
ACGCCGGTTGGCCTCGTCCCCATGCACCTGCTCGTAGTCCGCCCACGCCTGGAGAAGCGCGATGT
GCGCCTGGTCGTCACCACTGACCCGGAACGCCTCGGCAGCCCGCGTGAACACCGCACGGGTCTTG
TCGCGGTGGCTGTTGGTAATCTCCACCTCGAGCTCGTCGGCATCGGACGCATTGAACGCATCCAA
CTGCTCGTCGGTGGGAATGGCCGACTCCCACAACGCATAGGCCACCCAGTCGCCCACCAGCGCCT
CGGGCGCCCCCACCGTCCGCTCGTACACCTCGCGAGCCTCGGGATACAACAACTCGTCGGTGAAC
CAGTCCACGGCGAACCGGCGCGCCTGGGCATCGGGCGCGGACGCC
Found at i:39466 original size:18 final size:17
Alignment explanation
Indices: 39440--39478 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
39430 GCGCCAGATC
39440 GAAGAGGTGGTGGAGAAG
1 GAAG-GGTGGTGGAGAAG
39458 GAA-GG-GGTGGAGAAG
1 GAAGGGTGGTGGAGAAG
39473 GAAGGG
1 GAAGGG
39479 GTGGAGGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.65
16 4 0.20
18 3 0.15
ACGTcount: A:0.33, C:0.00, G:0.59, T:0.08
Consensus pattern (17 bp):
GAAGGGTGGTGGAGAAG
Left flanking sequence: Indices 38940 -- 39439
AAAGTCGAGGTAGGCCTCCCACGCCACGGACGGGGGACGCCATTCGAGCCACCGCTCGAACACCA
GGCGGGTTTTGGGGAAGTTCTTGAGCATCTCCTCCGTCTGCACGTACATGAACCACAACTTCTGC
TCGTGGGGAAGCACGGTGACCGCCCGGTCGAGCAAGTTTCGGGCGTGGTTCACGGCCTTGAGCGC
GAGCTCAAACCGGATGTAGTGGACCCAGAGGGGCACGTGGGCGATGTCGGCGTCGAGTGCCCGTT
CGTAGATCGAGCGGGCCCGGGCGTAGTCGTGGTTCTCCTCGGCCTCCCATCGGGCGTAGCGGAGC
CACAGGCCGAAAGCCTTGGGATTGCGGCCCACCAGCCGCTCAAAGTCACGGCGTTTGACGAGCTG
CCACAGCCGGAGCTCCTCGAGGTCCGCAGCCTCGTGGAGCCGCGGAGCCTGGGCCGGGGGCTCGG
GTCTGGTTTCGGTCGCCATGGGTCAGATGAGATTCGCGCCAGATC
Right flanking sequence: Indices 39479 -- 39978
GTGGAGGGAGGGATGGAGAAGGAAGGGATGGAAGAGAATGGGTGTGTGGTGTGGGTTGGTGTTGT
GTGTTGGAATTGGTGGTTTGGGTAGTAGTTTGGTTTAGTTGTGTTTGGGCTGTTGTGTTTGGATA
GTTTCCTGGTGGCTAGTTGGTTATATTTAGTAGCGCGTGTATGGGAAGTAAATAGAGTCGACTCA
ATGGCGATGAAAAAGTAAACTGGGAATGAAAGCTGCCTTGGTTTTGGTTCATAGGTCAATCAGTG
ACGCCAATGTGTGCCAATTTTGACTGTTGGTGTTCCACCCTGAACACCTTCTCACCCAACACCTT
TCTAGAGCCTCCACTCACTCGAGCCTCCACCTACTCGAGTCCACCCCTACACCGCTAAACCTTCT
CCAAATCGCGCCCCACATCATTCTTTACCTGCCACTGTGCCCTCAACACCCGCCTCCCGGCCTAC
ACCATACTATTCTATGCGTTTATTAGATTTTTCATTCATGACGGT
Found at i:39488 original size:19 final size:15
Alignment explanation
Indices: 39448--39510 Score: 87
Period size: 15 Copynumber: 4.4 Consensus size: 15
39438 TCGAAGAGGT
39448 GGTGGAGAAGGAAGG
1 GGTGGAGAAGGAAGG
39463 GGTGGAGAAGGAAGG
1 GGTGGAGAAGGAAGG
39478 GGTGGAG--GG-AGG
1 GGTGGAGAAGGAAGG
*
39490 GATGGAGAAGGAAGG
1 GGTGGAGAAGGAAGG
*
39505 GATGGA
1 GGTGGA
39511 AGAGAATGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
12 9 0.20
13 2 0.05
14 2 0.05
15 31 0.70
ACGTcount: A:0.32, C:0.00, G:0.60, T:0.08
Consensus pattern (15 bp):
GGTGGAGAAGGAAGG
Left flanking sequence: Indices 38948 -- 39447
GGTAGGCCTCCCACGCCACGGACGGGGGACGCCATTCGAGCCACCGCTCGAACACCAGGCGGGTT
TTGGGGAAGTTCTTGAGCATCTCCTCCGTCTGCACGTACATGAACCACAACTTCTGCTCGTGGGG
AAGCACGGTGACCGCCCGGTCGAGCAAGTTTCGGGCGTGGTTCACGGCCTTGAGCGCGAGCTCAA
ACCGGATGTAGTGGACCCAGAGGGGCACGTGGGCGATGTCGGCGTCGAGTGCCCGTTCGTAGATC
GAGCGGGCCCGGGCGTAGTCGTGGTTCTCCTCGGCCTCCCATCGGGCGTAGCGGAGCCACAGGCC
GAAAGCCTTGGGATTGCGGCCCACCAGCCGCTCAAAGTCACGGCGTTTGACGAGCTGCCACAGCC
GGAGCTCCTCGAGGTCCGCAGCCTCGTGGAGCCGCGGAGCCTGGGCCGGGGGCTCGGGTCTGGTT
TCGGTCGCCATGGGTCAGATGAGATTCGCGCCAGATCGAAGAGGT
Right flanking sequence: Indices 39511 -- 40010
AGAGAATGGGTGTGTGGTGTGGGTTGGTGTTGTGTGTTGGAATTGGTGGTTTGGGTAGTAGTTTG
GTTTAGTTGTGTTTGGGCTGTTGTGTTTGGATAGTTTCCTGGTGGCTAGTTGGTTATATTTAGTA
GCGCGTGTATGGGAAGTAAATAGAGTCGACTCAATGGCGATGAAAAAGTAAACTGGGAATGAAAG
CTGCCTTGGTTTTGGTTCATAGGTCAATCAGTGACGCCAATGTGTGCCAATTTTGACTGTTGGTG
TTCCACCCTGAACACCTTCTCACCCAACACCTTTCTAGAGCCTCCACTCACTCGAGCCTCCACCT
ACTCGAGTCCACCCCTACACCGCTAAACCTTCTCCAAATCGCGCCCCACATCATTCTTTACCTGC
CACTGTGCCCTCAACACCCGCCTCCCGGCCTACACCATACTATTCTATGCGTTTATTAGATTTTT
CATTCATGACGGTAACTTAATCCTTCTTGATCAAGTCGAGGTTTT
Found at i:39829 original size:16 final size:16
Alignment explanation
Indices: 39808--39842 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
39798 CACCTTTCTA
39808 GAGCCTCCA-CTCACTC
1 GAGCCTCCACCT-ACTC
39824 GAGCCTCCACCTACTC
1 GAGCCTCCACCTACTC
39840 GAG
1 GAG
39843 TCCACCCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.20, C:0.46, G:0.17, T:0.17
Consensus pattern (16 bp):
GAGCCTCCACCTACTC
Left flanking sequence: Indices 39308 -- 39807
AGTCACGGCGTTTGACGAGCTGCCACAGCCGGAGCTCCTCGAGGTCCGCAGCCTCGTGGAGCCGC
GGAGCCTGGGCCGGGGGCTCGGGTCTGGTTTCGGTCGCCATGGGTCAGATGAGATTCGCGCCAGA
TCGAAGAGGTGGTGGAGAAGGAAGGGGTGGAGAAGGAAGGGGTGGAGGGAGGGATGGAGAAGGAA
GGGATGGAAGAGAATGGGTGTGTGGTGTGGGTTGGTGTTGTGTGTTGGAATTGGTGGTTTGGGTA
GTAGTTTGGTTTAGTTGTGTTTGGGCTGTTGTGTTTGGATAGTTTCCTGGTGGCTAGTTGGTTAT
ATTTAGTAGCGCGTGTATGGGAAGTAAATAGAGTCGACTCAATGGCGATGAAAAAGTAAACTGGG
AATGAAAGCTGCCTTGGTTTTGGTTCATAGGTCAATCAGTGACGCCAATGTGTGCCAATTTTGAC
TGTTGGTGTTCCACCCTGAACACCTTCTCACCCAACACCTTTCTA
Right flanking sequence: Indices 39843 -- 40342
TCCACCCCTACACCGCTAAACCTTCTCCAAATCGCGCCCCACATCATTCTTTACCTGCCACTGTG
CCCTCAACACCCGCCTCCCGGCCTACACCATACTATTCTATGCGTTTATTAGATTTTTCATTCAT
GACGGTAACTTAATCCTTCTTGATCAAGTCGAGGTTTTCGTAGACACGGCCAGACTTTTTGTACA
AGTCGGCGGCAGTGACACCCGACTTGTTGGCCTCGTTGTGCTGCAACTGCTTCAACATGAGCTTG
ACCTGCGCCCGCTCCTTGGTCCCGTGGAGACACTCGTAGTAGTCGTCGTACTGGGGGATGCACTG
CTTCTTGGACGAGGTGTCCGCCGAGGTGTAGCACGCCGCAAGCGTCTGGAACTCGTAAAAGCACT
TTCTCGTGCCGCCGGATCTCGAAATGGGCTCCATATTAGTATAGGGTTTTTTTTAATTGGTTGAA
TTCGTTTGGTTGAAGTGCGAAAAACCGTGCGGCGCGTACAGGAGG
Found at i:44563 original size:15 final size:17
Alignment explanation
Indices: 44543--44585 Score: 63
Period size: 15 Copynumber: 2.6 Consensus size: 17
44533 AACACGCAAC
44543 CACGCTCGTCAG-T-CT
1 CACGCTCGTCAGTTCCT
44558 CACGCTCGTCAGTTCCT
1 CACGCTCGTCAGTTCCT
*
44575 CACACTCGTCA
1 CACGCTCGTCA
44586 CGCTGTCACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.48
16 1 0.04
17 12 0.48
ACGTcount: A:0.16, C:0.42, G:0.16, T:0.26
Consensus pattern (17 bp):
CACGCTCGTCAGTTCCT
Left flanking sequence: Indices 44043 -- 44542
AGGAGGTGGGGGAGAGGATGGGATATAAGGGTGGGGAGAGGCTGTGGTGTGTTTATGTTGTTGGT
GGGTAGTGGGTGTGTGTGTGTATGGGTAGTGGTGGTGGTAGGGTTTGTATTTTTGGTGTTGCGTT
CAGTGTTTGGTGATGGTGCGTAGGTAGTGAGGAGACTGTAGGGTGGGAAAGAAGGTCAATTGGGT
GGAAGGGGCGAAGCAGTGTGGTGGTAGGTTTAGGGAGGGAAAGTCGGTGGGGTTTCCGGTGTCAT
TGTTGCCTTAGTATCGTCTTTTGGTGTCTTCTACGGAATGCAATGCTATGTCACTCGCAAACAAT
ACACACTACAATGGACGTTCCTGAGCCAATGTGTAAGGTGAATGTGGAGCGTTAGCGTGTGACTT
GGCCATACAACACCCAGCACCATCCTACGTTACTTGGCTCTCCAACGCGTAAGGAAGCTCGCCAC
AGCACAGACCCACCGGTAGTACGCAACCACGCGATAACACGCAAC
Right flanking sequence: Indices 44586 -- 45085
CGCTGTCACGCTTTCACGCTCACCACACTCACCACACCCAGCCGCTTGTCTGTCTTCGCGCTACC
TTCGTTCCACCGCAATTGCAACGCTCACACCCACACCCAACCACGTCTACAGCCACAACCACTGG
CCACAACCAACAGCCCCAAGCTCTCCCACTTCCAATCATAACTCGTGTATTAGCTACCTAGTAAC
CCCCTCTCAACGACAACACCACGTGGAGGTTCGATCCCGGCTGGATCCCGCACTCCGCCACCAGG
AGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTT
CTCCTCCATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCACGTCCACAGGGATGTTGC
GCCCGGTCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCGTTGATGCGCGTTTATTTC
GCACGTCTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGA
Found at i:44582 original size:17 final size:15
Alignment explanation
Indices: 44547--44585 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
44537 CGCAACCACG
*
44547 CTCGTCAGTCTCACG
1 CTCGTCAGTCTCACA
44562 CTCGTCAGTTCCTCACA
1 CTCGTCAG-T-CTCACA
44579 CTCGTCA
1 CTCGTCA
44586 CGCTGTCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 1 0.05
17 12 0.57
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.28
Consensus pattern (15 bp):
CTCGTCAGTCTCACA
Left flanking sequence: Indices 44047 -- 44546
GGTGGGGGAGAGGATGGGATATAAGGGTGGGGAGAGGCTGTGGTGTGTTTATGTTGTTGGTGGGT
AGTGGGTGTGTGTGTGTATGGGTAGTGGTGGTGGTAGGGTTTGTATTTTTGGTGTTGCGTTCAGT
GTTTGGTGATGGTGCGTAGGTAGTGAGGAGACTGTAGGGTGGGAAAGAAGGTCAATTGGGTGGAA
GGGGCGAAGCAGTGTGGTGGTAGGTTTAGGGAGGGAAAGTCGGTGGGGTTTCCGGTGTCATTGTT
GCCTTAGTATCGTCTTTTGGTGTCTTCTACGGAATGCAATGCTATGTCACTCGCAAACAATACAC
ACTACAATGGACGTTCCTGAGCCAATGTGTAAGGTGAATGTGGAGCGTTAGCGTGTGACTTGGCC
ATACAACACCCAGCACCATCCTACGTTACTTGGCTCTCCAACGCGTAAGGAAGCTCGCCACAGCA
CAGACCCACCGGTAGTACGCAACCACGCGATAACACGCAACCACG
Right flanking sequence: Indices 44586 -- 45085
CGCTGTCACGCTTTCACGCTCACCACACTCACCACACCCAGCCGCTTGTCTGTCTTCGCGCTACC
TTCGTTCCACCGCAATTGCAACGCTCACACCCACACCCAACCACGTCTACAGCCACAACCACTGG
CCACAACCAACAGCCCCAAGCTCTCCCACTTCCAATCATAACTCGTGTATTAGCTACCTAGTAAC
CCCCTCTCAACGACAACACCACGTGGAGGTTCGATCCCGGCTGGATCCCGCACTCCGCCACCAGG
AGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTT
CTCCTCCATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCACGTCCACAGGGATGTTGC
GCCCGGTCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCGTTGATGCGCGTTTATTTC
GCACGTCTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGA
Found at i:45213 original size:10 final size:10
Alignment explanation
Indices: 45198--45238 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
45188 ACCTACGTCC
45198 CACCCACCGT
1 CACCCACCGT
45208 CACCCACCGT
1 CACCCACCGT
45218 CACCCACCGT
1 CACCCACCGT
45228 CACCCACCGT
1 CACCCACCGT
45238 C
1 C
45239 GCCACCGCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.20, C:0.61, G:0.10, T:0.10
Consensus pattern (10 bp):
CACCCACCGT
Left flanking sequence: Indices 44698 -- 45197
TACAGCCACAACCACTGGCCACAACCAACAGCCCCAAGCTCTCCCACTTCCAATCATAACTCGTG
TATTAGCTACCTAGTAACCCCCTCTCAACGACAACACCACGTGGAGGTTCGATCCCGGCTGGATC
CCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATGAGCCGCTGCTGCGA
CGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCA
CGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCG
TTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGACG
AAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGCGTGCCCCGCTCCGTGC
CCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCC
Right flanking sequence: Indices 45239 -- 45738
GCCACCGCCCACACCACCAAACCACGCCACCAAACACCACCAAACAACACCAAACACCACCAAAC
ACACCACCCACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACC
ATCCTTTGTAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGATCTCCACACCCGATGCT
CTCCACACCCGATGTCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGC
TCCTCGACTGCTTCGAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGC
GAGATCGGTGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTA
CACCGTAGCCACCGACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACC
ACCTCCGCAACGGGGTGGAGATGATGCAGATGAGCCTTGGCGATG
Found at i:45263 original size:13 final size:13
Alignment explanation
Indices: 45247--45311 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
45237 TCGCCACCGC
45247 CCACACCACCAAA
1 CCACACCACCAAA
*
45260 CCACGCCACCAAA
1 CCACACCACCAAA
*
45273 -CACCACCAAACAACA
1 CCA-CACC-ACCAA-A
45288 CCAAACACCACCAAA
1 CC--ACACCACCAAA
45303 -CACACCACC
1 CCACACCACC
45312 CACCCCACCG
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
12 10 0.24
13 15 0.36
14 5 0.12
15 2 0.05
16 5 0.12
17 4 0.10
18 1 0.02
ACGTcount: A:0.46, C:0.52, G:0.02, T:0.00
Consensus pattern (13 bp):
CCACACCACCAAA
Left flanking sequence: Indices 44747 -- 45246
CCAATCATAACTCGTGTATTAGCTACCTAGTAACCCCCTCTCAACGACAACACCACGTGGAGGTT
CGATCCCGGCTGGATCCCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGA
TGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATC
TTGTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCAT
GGTGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCAC
ACCACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGC
GTGCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCCCACC
CACCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCCACCGC
Right flanking sequence: Indices 45312 -- 45811
CACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACCATCCTTTG
TAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGATCTCCACACCCGATGCTCTCCACAC
CCGATGTCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGCTCCTCGAC
TGCTTCGAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGCGAGATCGG
TGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTACACCGTAG
CCACCGACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACCACCTCCGC
AACGGGGTGGAGATGATGCAGATGAGCCTTGGCGATGGCCTCCGCCCGGGAGTGGTGGATCTACT
CGTGTTCAACCCGCCGTATGTGCCGGCCGAGGAGGTTCCGGCCCG
Found at i:45280 original size:10 final size:10
Alignment explanation
Indices: 45249--45309 Score: 79
Period size: 10 Copynumber: 5.9 Consensus size: 10
45239 GCCACCGCCC
45249 ACACCACCAA
1 ACACCACCAA
45259 ACCACGCCACCAA
1 A-CA--CCACCAA
45272 ACACCACCAA
1 ACACCACCAA
*
45282 ACAACACCAA
1 ACACCACCAA
45292 ACACCACCAA
1 ACACCACCAA
45302 ACA-CACCA
1 ACACCACCA
45310 CCCACCCCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 5 0.11
10 29 0.63
11 2 0.04
12 2 0.04
13 8 0.17
ACGTcount: A:0.49, C:0.49, G:0.02, T:0.00
Consensus pattern (10 bp):
ACACCACCAA
Left flanking sequence: Indices 44749 -- 45248
AATCATAACTCGTGTATTAGCTACCTAGTAACCCCCTCTCAACGACAACACCACGTGGAGGTTCG
ATCCCGGCTGGATCCCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGATG
AGCCGCTGCTGCGACGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATCTT
GTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCATGG
TGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCACAC
CACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGCGT
GCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCCCACCCA
CCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCCACCGCCC
Right flanking sequence: Indices 45310 -- 45809
CCCACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACCATCCTT
TGTAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGATCTCCACACCCGATGCTCTCCAC
ACCCGATGTCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGCTCCTCG
ACTGCTTCGAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGCGAGATC
GGTGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTACACCGT
AGCCACCGACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACCACCTCC
GCAACGGGGTGGAGATGATGCAGATGAGCCTTGGCGATGGCCTCCGCCCGGGAGTGGTGGATCTA
CTCGTGTTCAACCCGCCGTATGTGCCGGCCGAGGAGGTTCCGGCC
Found at i:45320 original size:12 final size:12
Alignment explanation
Indices: 45312--45343 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
45302 ACACACCACC
45312 CACCCCACCGCA
1 CACCCCACCGCA
45324 CACCCCACCGCA
1 CACCCCACCGCA
45336 CACCCCAC
1 CACCCCAC
45344 TTCTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.69, G:0.06, T:0.00
Consensus pattern (12 bp):
CACCCCACCGCA
Left flanking sequence: Indices 44812 -- 45311
CGATCCCGGCTGGATCCCGCACTCCGCCACCAGGAGGTCGTCCTGGAGCTGGCTCCCCTGGTAGA
TGAGCCGCTGCTGCGACGGGTGGATCCCCTCCTTCTCCTCCATCATCTCCTTGATGCGGATGATC
TTGTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGGTCAACGTCTTGACGTGCACTTGCAT
GGTGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGTCTGGTAGTGGGCTGGGCGAGACCAC
ACCACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGTGGGCCCTGCTGAGTCCACCCCGCGC
GTGCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGCTATTTATAGCCACCTACGTCCCACC
CACCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCCACCGCCCACACCACCAAACCACGCC
ACCAAACACCACCAAACAACACCAAACACCACCAAACACACCACC
Right flanking sequence: Indices 45344 -- 45843
TTCTATTTTTATCTAGTCGTATACCATCCTTTGTAGACCCTTATCTCTGTGCGGCTTCGCACGAT
CAACTCGATCTCCACACCCGATGCTCTCCACACCCGATGTCCGCAACCTCCACGAGCAGGTGTAC
GAGCCCGCGGAGGACCTGTTCTTGCTCCTCGACTGCTTCGAGCAGGACCGGGCCGAGCTCATGGC
GCGGTTTGCGTTCCCCGTGGTGTGCGAGATCGGTGCCGGCTCGGGGGTGGTGCTGAGCTTTGTCG
CCCAGCACTTGTACCCGAAGGGGTACACCGTAGCCACCGACATCAACCCCCACGCGTGCTCGCAG
GTGGTGTCTACGTTTCGCGAAAACCACCTCCGCAACGGGGTGGAGATGATGCAGATGAGCCTTGG
CGATGGCCTCCGCCCGGGAGTGGTGGATCTACTCGTGTTCAACCCGCCGTATGTGCCGGCCGAGG
AGGTTCCGGCCCGGCCCCAGGCAGACGACGACCCGGTGTGGCTTG
Found at i:45438 original size:16 final size:16
Alignment explanation
Indices: 45417--45447 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45407 ATCAACTCGA
45417 TCTCCACACCCGATGC
1 TCTCCACACCCGATGC
45433 TCTCCACACCCGATG
1 TCTCCACACCCGATG
45448 TCCGCAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.48, G:0.13, T:0.19
Consensus pattern (16 bp):
TCTCCACACCCGATGC
Left flanking sequence: Indices 44917 -- 45416
CATCATCTCCTTGATGCGGATGATCTTGTCGGTGGGCTCCACGTCCACAGGGATGTTGCGCCCGG
TCAACGTCTTGACGTGCACTTGCATGGTGTGATGAATGTCGTTGATGCGCGTTTATTTCGCACGT
CTGGTAGTGGGCTGGGCGAGACCACACCACGGGAGAAGACGAAAGGGACTGCTACGAGCGGGTGT
GGGCCCTGCTGAGTCCACCCCGCGCGTGCCCCGCTCCGTGCCCGCTATCTACGTGTCGGCTACGC
TATTTATAGCCACCTACGTCCCACCCACCGTCACCCACCGTCACCCACCGTCACCCACCGTCGCC
ACCGCCCACACCACCAAACCACGCCACCAAACACCACCAAACAACACCAAACACCACCAAACACA
CCACCCACCCCACCGCACACCCCACCGCACACCCCACTTCTATTTTTATCTAGTCGTATACCATC
CTTTGTAGACCCTTATCTCTGTGCGGCTTCGCACGATCAACTCGA
Right flanking sequence: Indices 45448 -- 45947
TCCGCAACCTCCACGAGCAGGTGTACGAGCCCGCGGAGGACCTGTTCTTGCTCCTCGACTGCTTC
GAGCAGGACCGGGCCGAGCTCATGGCGCGGTTTGCGTTCCCCGTGGTGTGCGAGATCGGTGCCGG
CTCGGGGGTGGTGCTGAGCTTTGTCGCCCAGCACTTGTACCCGAAGGGGTACACCGTAGCCACCG
ACATCAACCCCCACGCGTGCTCGCAGGTGGTGTCTACGTTTCGCGAAAACCACCTCCGCAACGGG
GTGGAGATGATGCAGATGAGCCTTGGCGATGGCCTCCGCCCGGGAGTGGTGGATCTACTCGTGTT
CAACCCGCCGTATGTGCCGGCCGAGGAGGTTCCGGCCCGGCCCCAGGCAGACGACGACCCGGTGT
GGCTTGATCTCGCGTTGCTCGGGGGCGCAGACGGCATGGAGACGACGTGGCAGGTGCTCGACAAC
TTGGACACCCTCCTCTCTCGCGATGGCATCGCCTACATCTTGTTC
Found at i:47476 original size:18 final size:18
Alignment explanation
Indices: 47440--47479 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
47430 ACAAACACTC
*
47440 GCACAAGCACGACCACAA
1 GCACAAGCACAACCACAA
47458 GCACAAGCACAAACC-CAA
1 GCACAAGCAC-AACCACAA
47476 GCAC
1 GCAC
47480 GCCTCCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.45, C:0.40, G:0.15, T:0.00
Consensus pattern (18 bp):
GCACAAGCACAACCACAA
Left flanking sequence: Indices 46940 -- 47439
TGATCCCGTTGGTAGTGCTATATAAGGTTTGAGGCAGACTAACAATGGCTAAGGAACTGGCAACG
CCTTGGCGTGGGCGCCAATCGTCCGTCAGTCTCCACAGTAGCCCCTACAGTAGCCCCCACGGTGT
TCACCTTGTCCACCTGTGGCGTTGGAATAGTTTTCGTTGGGCCTGGTTCCCGTGTAGATAAACCT
CTCAAATTTGTTGCGGCTGCGAACATGGCTGGGGACAAGAGGAAGCGGAAGAGATCCAAGAAGAA
GGGCCACCACGAGGTGGCCGCGGCAGACGAGCCCGTGTACGAGCCCCAGAACACCGTCAACACCA
AGATCCGCTTCGATGAGACCCCACAGCCCGCTGGCGAGCCCGCTGAGCCGCGCGATGAGGAGGCC
ATCGCTGGCGAGGACGTCCCCCAGGAGCCGGTGGAGGCCCAGGAACCCACAGAGAACGCTCCTGA
GGACGCATTGGAGCCCCTGGAAGCCCCCAAGCACCACAAACACTC
Right flanking sequence: Indices 47480 -- 47979
GCCTCCTTCTACGACCACGACGACGACGAGGACGACGACTTTGGCGGCGACCGCGGCCACAAGAG
TCGCCACGAGTTGGCTGCCACCGCCGCCAAGCTCTTGGAAGTGCGCAAAACCCTTCCCATCTACC
GCCATCGCCAGGCGATCCTCGACCAGATCAACGCGCACCAGGTGACGGTGGTGATTGGTGAGACC
GGTTCCGGTAAGTCGACCCAGATCCCGCAGTTCTTGTTGGAGCAGGGTCTGGAGAAGCTTGTGGG
GTGTACCCAGCCCCGTCGAGTGGCCGCAGCCTCGTTGGCGGCCCGTGTGGCCCAGGAGTATGGCA
CCCGCTTGGGGGACGCCGTGGGTTACCAGGTGCGGTTCTCCAACATCACCAGCCACAAGACCAAG
CTCAAGTACCTCACAGACGGTATGTTGCTTCGAGAGATCATGTTGGACGGCACTCTCCAGCGGTA
CCTGTCGATCATCATCGACGAGGCCCACGAGAGAACCGTGCTCAC
Found at i:52597 original size:11 final size:11
Alignment explanation
Indices: 52559--52589 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
52549 TCGTTACACT
52559 GCACCTGCGCG
1 GCACCTGCGCG
52570 GCACCTGCGCG
1 GCACCTGCGCG
52581 GCACCTGCG
1 GCACCTGCG
52590 ATGCACCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.35, T:0.10
Consensus pattern (11 bp):
GCACCTGCGCG
Left flanking sequence: Indices 52059 -- 52558
GCAAGTCGGCTACGGCCTCGATCCGCAGTCTCATGTCGCTGAGCACTGTTTCGCGAGTGGCTACC
CGTTTGATACTGATGCCCTCATCGTCCAAACCGCCGTAGATGCTGGCTCGCAGGTACTGGCGCGG
CTGGGCCTCCTCATCGGTGGATACGTTGTACGCCTGCACGGTGCCGTCAGAGCTGTCGTGGGACA
GGTACTTATCCAGGTCCCGTGTCATGATCTGTGCTTAAATGAAATTTCGGACTTGTTTTGCGGTT
CTCCGTTACCTTTATATACTACAGCAAACGGGGTTAATGCTATGTCCGCATCATCTTGCCGATGA
GTCAGCGCCGGTGGTGTGGGGGAAGGAAGGGCGCTACGGACGGGAAAAACGGTGGACCGGGTACT
AGGGGCAGCAAAGAGGAAGCCTAGCTGGTAAAAAGTGCACCAACAGGCGCCCAATTGGCCCTAGC
CCGCCCGTCGGCTTGAACCCGTTCCGGTATGTGTGTCGTTACACT
Right flanking sequence: Indices 52590 -- 53089
ATGCACCTCCTTAACGGGGACGAAAGAGATTGCTTACTAATGGTCGGGCGAGTTCACCCCCGCCA
GAGGGGCAGCGAAGGACCAGCAATCCGCGCTATACCCGCGCAGCAACTCCAGGCGACCCCGTCAA
CACCCGCTGCTTCTCTTGCACCCACCGTAGCCGCACTAGTGTCATCCGGAAAATCGCGCTGTTCT
CCGAGAGGCGCCACAGTGCGCATGGCACCACTGCACTCACGCCGTTCGTGGTGGCTGAGACATTG
ACTGCATGGGTTCTTGGCACGGTGTCGTGCTATATTTGACCGCTGTCGGCACCGGACCTCTTGGG
CCGGTTTACGGCCGCTGCCCGTGGGATGTCGGCACGGTGGTGACTCTCGCCGGTGCACAGGTGGT
GCACCTACAGTGCACATTCCCCGCTTCAATGTCGTGTCGATCCTCGGGCCGAAGCCGACAACGGT
GGACGAGCCGTAGCTGCGTACACAAACGCATTGTGTGGGTGCGGA
Found at i:53396 original size:17 final size:17
Alignment explanation
Indices: 53374--53410 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
53364 TGTGTAAAGG
53374 AAGAGGTGTAGGGTGTA
1 AAGAGGTGTAGGGTGTA
53391 AAGAGGTGTAGGGTGTA
1 AAGAGGTGTAGGGTGTA
53408 AAG
1 AAG
53411 GAAAGAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.46, T:0.22
Consensus pattern (17 bp):
AAGAGGTGTAGGGTGTA
Left flanking sequence: Indices 52874 -- 53373
TCGTGCTATATTTGACCGCTGTCGGCACCGGACCTCTTGGGCCGGTTTACGGCCGCTGCCCGTGG
GATGTCGGCACGGTGGTGACTCTCGCCGGTGCACAGGTGGTGCACCTACAGTGCACATTCCCCGC
TTCAATGTCGTGTCGATCCTCGGGCCGAAGCCGACAACGGTGGACGAGCCGTAGCTGCGTACACA
AACGCATTGTGTGGGTGCGGACAAAGGACACACGGGTGATTACAATCGACTGATGACAAATAGCA
AACGGTGCGGGATCGGGCCAACGGGTGGGCTTACGAAAGGACCGGGGGCTCGGGGATAGGAGCGG
GTGGGGATCGGTGAACTGGCCGACCCCTCAGTGTTTCTTTTGTGGCCCGGGTGGATGCGAAGGGT
GGAGGAGAGACGAGCGGCTGTAGACGTGGGTGAGGTGGGCGGTAGTGCGGACGAACGGGCCGGAC
CGGTGCAGTGAAGGGGTGTCAGGGAAGAGTCATAATGTGTAAAGG
Right flanking sequence: Indices 53411 -- 53910
GAAAGAGTCAATATGTGGACGAGTAGTGCTAAGCAAATTTGGTTGTTTATGTGGAGCAATGAGTG
ACCGGTGGTGGCCTAGACTCTACCCAGGTACACGCTACACGCTATTGCCAACCACCACTGGGGTG
TCTTACATTTCTTTTGGCAGCTTATCACGCTACTGCTCGCCTATAACGCCACTAGCAACCACGGG
AGAGACTCGTCCACGGTCAGACGGTAGATCGGAAGTGCGTAATACCACCAGTTTAGACGTGGGGG
TTGAAGGTTTTAACAATGCGATGCGCTCTCAAATTAGCGATGACGTAGATCATCTACACTGCTTA
GAGCAAGCGTCAACGGACCTAGCCACCGGTCCCAGCCGCGAGCTGCTGGATGACGTGTGCCAAGC
TATCGGTCCACACGGCTGAGTTTCTTTTGAGGGGGAAAGTGGCTAGTGGAAACAGTGGGTGGCGA
GACCGGAGATGATGGTATTGGCCAGTTCGGACAAGTCCTTGTGGT
Found at i:57956 original size:11 final size:11
Alignment explanation
Indices: 57942--57996 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
57932 GACGGTAGAA
*
57942 GCGATGTAGGG
1 GCGAGGTAGGG
* *
57953 GCGAGTTAGGC
1 GCGAGGTAGGG
57964 GCGAGGTAGGG
1 GCGAGGTAGGG
57975 GCGAGGTA-GG
1 GCGAGGTAGGG
57985 GCGAGGTAGGG
1 GCGAGGTAGGG
57996 G
1 G
57997 GCTCGGTGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
10 10 0.26
11 28 0.74
ACGTcount: A:0.18, C:0.11, G:0.58, T:0.13
Consensus pattern (11 bp):
GCGAGGTAGGG
Left flanking sequence: Indices 57442 -- 57941
CACTTGGCGCGACATGGTATGACAATCAACAGGCGGGTGCGCACTACGGAGTCTGTGCGCCTGGG
GGTCGGGTTCGGGCGTGGCAAGGGGTAGGCTCCGGTGACAGTGTTGCCCAACTTGCTTTTTTTCG
ACTCGGGCGTGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGT
AGCGGGCTGGGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTT
TGGCGTGGGGCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCA
AGGTGTGACTAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGT
AGTGGCGGCGACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACT
GCGCATGCGGTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAA
Right flanking sequence: Indices 57997 -- 58496
GCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGTGGGGTGGTTGTGGTGTGG
TTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTATT
CTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGA
CGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCA
GCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCG
ACCGGCCCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGT
CCTTAGCAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGA
ATGTGTCAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTG
Found at i:57988 original size:10 final size:10
Alignment explanation
Indices: 57951--57995 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
57941 AGCGATGTAG
*
57951 GGGCGAGTTA
1 GGGCGAGGTA
57961 GGCGCGAGGTA
1 GG-GCGAGGTA
57972 GGGGCGAGGTA
1 -GGGCGAGGTA
57983 GGGCGAGGTA
1 GGGCGAGGTA
57993 GGG
1 GGG
57996 GGCTCGGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 15 0.47
11 15 0.47
12 2 0.06
ACGTcount: A:0.18, C:0.11, G:0.60, T:0.11
Consensus pattern (10 bp):
GGGCGAGGTA
Left flanking sequence: Indices 57451 -- 57950
CGACATGGTATGACAATCAACAGGCGGGTGCGCACTACGGAGTCTGTGCGCCTGGGGGTCGGGTT
CGGGCGTGGCAAGGGGTAGGCTCCGGTGACAGTGTTGCCCAACTTGCTTTTTTTCGACTCGGGCG
TGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGTAGCGGGCTG
GGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTTTGGCGTGGG
GCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCAAGGTGTGAC
TAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGTAGTGGCGGC
GACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGCATGCG
GTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAAGCGATGTAG
Right flanking sequence: Indices 57996 -- 58495
GGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGTGGGGTGGTTGTGGTGTG
GTTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTAT
TCTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAG
ACGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGC
AGCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGC
GACCGGCCCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGG
TCCTTAGCAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGG
AATGTGTCAACGATCCTCGTCAACGAGACAAAATAGAACAATCGT
Found at i:57998 original size:22 final size:22
Alignment explanation
Indices: 57942--57996 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
57932 GACGGTAGAA
* *
57942 GCGATGTAGGGGCGAGTTAGGC
1 GCGAGGTAGGGGCGAGGTAGGC
57964 GCGAGGTAGGGGCGAGGTAGG-
1 GCGAGGTAGGGGCGAGGTAGGC
57985 GCGAGGTAGGGG
1 GCGAGGTAGGGG
57997 GCTCGGTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.18, C:0.11, G:0.58, T:0.13
Consensus pattern (22 bp):
GCGAGGTAGGGGCGAGGTAGGC
Left flanking sequence: Indices 57442 -- 57941
CACTTGGCGCGACATGGTATGACAATCAACAGGCGGGTGCGCACTACGGAGTCTGTGCGCCTGGG
GGTCGGGTTCGGGCGTGGCAAGGGGTAGGCTCCGGTGACAGTGTTGCCCAACTTGCTTTTTTTCG
ACTCGGGCGTGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGT
AGCGGGCTGGGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTT
TGGCGTGGGGCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCA
AGGTGTGACTAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGT
AGTGGCGGCGACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACT
GCGCATGCGGTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAA
Right flanking sequence: Indices 57997 -- 58496
GCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGTGGGGTGGTTGTGGTGTGG
TTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTATT
CTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGA
CGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCA
GCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCG
ACCGGCCCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGT
CCTTAGCAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGA
ATGTGTCAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTG
Found at i:58068 original size:11 final size:11
Alignment explanation
Indices: 58039--58068 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
58029 GTAGTGTTGT
*
58039 GTTGTGGGGTG
1 GTTGTGGTGTG
58050 GTTGTGGTGTG
1 GTTGTGGTGTG
58061 GTTGTGGT
1 GTTGTGGT
58069 TCTACTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.57, T:0.43
Consensus pattern (11 bp):
GTTGTGGTGTG
Left flanking sequence: Indices 57539 -- 58038
CGGTGACAGTGTTGCCCAACTTGCTTTTTTTCGACTCGGGCGTGTGCAGGTCGGGAGTGGCGGTT
CGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGTAGCGGGCTGGGGATGGTGGCAGCGGGTAGCGT
GGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTTTGGCGTGGGGCTCGTGGTGGGCGAGATCTACG
GGGGTATATGTCGCCCCTATTATCAGATTATCAAGGTGTGACTAAGAGGCTGAGACGGTGAGACT
TAGTCAGATATGAACAACGGGGTCTATGGGGGTAGTGGCGGCGACTACGGCCGTGTCGTCTGCCG
GCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGCATGCGGTGGTTCCGGAGGCGGGCCGTGC
AGTGACGGTAGAAGCGATGTAGGGGCGAGTTAGGCGCGAGGTAGGGGCGAGGTAGGGCGAGGTAG
GGGGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGT
Right flanking sequence: Indices 58069 -- 58568
TCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTAGTTTTTATTCTTTTTATTCTTGTTC
GTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGACGGCGAT
AGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCAGCTAAGA
ATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCGACCGGCC
CGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGTCCTTAGC
AATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGAATGTGTC
AACGATCCTCGTCAACGAGACAAAATAGAACAATCGTGCCGAAAAAGAAAACACGGATCTGCAAG
ATCTGGCCAACCGCAGGCACGTTGAGGCCCGATGGGTGGCTTTGA
Found at i:58092 original size:11 final size:11
Alignment explanation
Indices: 58076--58132 Score: 73
Period size: 11 Copynumber: 5.3 Consensus size: 11
58066 GGTTCTACTA
58076 GTTTTATTCTT
1 GTTTTATTCTT
*
58087 GTTTTACTCTT
1 GTTTTATTCTT
*
58098 GTTTTATTCTA
1 GTTTTATTCTT
58109 GTTTTTATTC-T
1 G-TTTTATTCTT
58120 -TTTTATTCTT
1 GTTTTATTCTT
58130 GTT
1 GTT
58133 CGTTCTTCGT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.21
10 1 0.03
11 22 0.56
12 8 0.21
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.70
Consensus pattern (11 bp):
GTTTTATTCTT
Left flanking sequence: Indices 57576 -- 58075
GGGCGTGTGCAGGTCGGGAGTGGCGGTTCGGTGGAGGACGGCGGGGGTGGGCAGCGGCGGTAGCG
GGCTGGGGATGGTGGCAGCGGGTAGCGTGGGTGCTGGCGGTGCTGGCGGTGTGCTTGGTTTTGGC
GTGGGGCTCGTGGTGGGCGAGATCTACGGGGGTATATGTCGCCCCTATTATCAGATTATCAAGGT
GTGACTAAGAGGCTGAGACGGTGAGACTTAGTCAGATATGAACAACGGGGTCTATGGGGGTAGTG
GCGGCGACTACGGCCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGC
ATGCGGTGGTTCCGGAGGCGGGCCGTGCAGTGACGGTAGAAGCGATGTAGGGGCGAGTTAGGCGC
GAGGTAGGGGCGAGGTAGGGCGAGGTAGGGGGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGT
AGTGTTGTGTTGTGGGGTGGTTGTGGTGTGGTTGTGGTTCTACTA
Right flanking sequence: Indices 58133 -- 58632
CGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTCAAGCCTTTCTCGCGTAGACGGCGA
TAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGGCCGGTGTGGTCCCGTGCAGCTAAG
AATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGGGCGTCTGATTGGCTGGCGACCGGC
CCGGGATGTGGAGCCGAGCGTTTCTTGGTTTTTGGTATCTTAGTTCTTGGTTTCTTGGTCCTTAG
CAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGAATGTGT
CAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTGCCGAAAAAGAAAACACGGATCTGCAA
GATCTGGCCAACCGCAGGCACGTTGAGGCCCGATGGGTGGCTTTGAACGGGGTACGCCGGACCGT
GGCTAGGTGTGACCCGTCGTGGTGTTTTCTGGTGGTGTTCGATGC
Found at i:58391 original size:22 final size:22
Alignment explanation
Indices: 58349--58392 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
58339 AGCCGAGCGT
*
58349 TTCTTGGTTTTTGGTATCTTAG
1 TTCTTGGTTTTTGGTACCTTAG
58371 TTCTTGGTTTCTTGGT-CCTTAG
1 TTCTTGGTTT-TTGGTACCTTAG
58393 CAATCCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.07, C:0.14, G:0.23, T:0.57
Consensus pattern (22 bp):
TTCTTGGTTTTTGGTACCTTAG
Left flanking sequence: Indices 57849 -- 58348
CCGTGTCGTCTGCCGGCACTGCCTGCCGTGGGCTAAATCACGCAAACTGCGCATGCGGTGGTTCC
GGAGGCGGGCCGTGCAGTGACGGTAGAAGCGATGTAGGGGCGAGTTAGGCGCGAGGTAGGGGCGA
GGTAGGGCGAGGTAGGGGGCTCGGTGTTGCTACGGATGGGGTAGGGATGGGTAGTGTTGTGTTGT
GGGGTGGTTGTGGTGTGGTTGTGGTTCTACTAGTTTTATTCTTGTTTTACTCTTGTTTTATTCTA
GTTTTTATTCTTTTTATTCTTGTTCGTTCTTCGTTCGTTTTATTATTCTGTCCTCTTATTCTCTC
AAGCCTTTCTCGCGTAGACGGCGATAGTGGAGCCATCCGATATCCTAACTAGGAAGGAGCCGCGG
CCGGTGTGGTCCCGTGCAGCTAAGAATAGCCCGTGGGTGACGGCCCGTGAGGTGGCTGGAACGGG
GCGTCTGATTGGCTGGCGACCGGCCCGGGATGTGGAGCCGAGCGT
Right flanking sequence: Indices 58393 -- 58892
CAATCCCTCTCAGTGTTACGCTACAGATCTACAGGGTATGGCACCACGTTCCCGAAGGAATGTGT
CAACGATCCTCGTCAACGAGACAAAATAGAACAATCGTGCCGAAAAAGAAAACACGGATCTGCAA
GATCTGGCCAACCGCAGGCACGTTGAGGCCCGATGGGTGGCTTTGAACGGGGTACGCCGGACCGT
GGCTAGGTGTGACCCGTCGTGGTGTTTTCTGGTGGTGTTCGATGCACAACTCGCAGCAACGTGCC
CCTGTCTGACAACGGGTTTACGGGGCCCGTTGTTGCGATTGTGGGGAAAGCGGGGAGCCTACGGA
GGGCGATGGTGTAATGGTGCGTGCCCCCACGCTCCCCCACGGGAGGACCAGTAGAGTGCAGCGAG
AGGAGGGTCAAAGCCCGACGGCCTAAGCCCCAGTGATTCGGAGTCATTGGTGAGCACACGACAGG
CGGGTCAGACGTGGTGTGAGCCAGCACACGCGGGTCTGGCACCAT
Found at i:59199 original size:24 final size:25
Alignment explanation
Indices: 59152--59200 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
59142 CAGCGGAATG
**
59152 AGGTATGAACCACACGTATGCAACC
1 AGGTATGAACCACACGTACACAACC
*
59177 AGGTATG-AGCACACGTACACAACC
1 AGGTATGAACCACACGTACACAACC
59201 CGGTGGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (25 bp):
AGGTATGAACCACACGTACACAACC
Left flanking sequence: Indices 58652 -- 59151
CCCTGTCTGACAACGGGTTTACGGGGCCCGTTGTTGCGATTGTGGGGAAAGCGGGGAGCCTACGG
AGGGCGATGGTGTAATGGTGCGTGCCCCCACGCTCCCCCACGGGAGGACCAGTAGAGTGCAGCGA
GAGGAGGGTCAAAGCCCGACGGCCTAAGCCCCAGTGATTCGGAGTCATTGGTGAGCACACGACAG
GCGGGTCAGACGTGGTGTGAGCCAGCACACGCGGGTCTGGCACCATTGGTAGTGGCGTGTGAGCC
AGCACACGAAAGGCGGGTCAGGCATCACCTGGGGAATACATAGGTTGTAGGTAGCTCAAACTGAC
GCAACTTCGGTGTCAATTGTTTGATGCTGAAAGTAAATTAAGGCATATGAGTACATTACTAGGAT
TATTTAACACGACTATCCATTCACAGACATGTGAGCGATTGATATAAGTATCAACTGAGTTCAGA
TTCATCCATCAATTCGACCAACGTATTACCTGGAACAGCGGAATG
Right flanking sequence: Indices 59201 -- 59700
CGGTGGAAATCTAGTAATCCAGCCAACTCACAACAATTGTCCAACAACAGTTGTCTAACCTTAGA
ATTACAGCAACCACGCACAATCAACTGAACGCTGGCTTCTTCACCATTCGCAACAGCTCAAAGCG
TAAATCACCCTGACGTTGAAGGAATCTGTTAGATACTTAGACAGCACACCCAATTTACTGGTGTC
CATTTCAAACGTTCAATCACTCACCATTCCTCTAAGACCTTCACACCTGTCCTCACACAACCTAC
CACATACCATACAACAGACCACACAGTCTAACAAAGAATCCACCACACGATACCCCCACCCATTA
CTTTCTCATGCTATTGATATCTACCTTATAAGCCAGTTATAGTGTTACAGTCCGCCCGTTAAATG
CATTTCACCGCACTCAATGCGGCAGTCCCCCAGTCCAAGTGCTCGGACGGAGCCGTCAGAATCAG
CTCGGTGTCGCTAAACACCCGCAGCGTCGGCAGGCCAAACACCAG
Found at i:69423 original size:14 final size:14
Alignment explanation
Indices: 69406--69435 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
69396 ATGCGGCAGC
69406 GGGTGCGCGTGCTG
1 GGGTGCGCGTGCTG
69420 GGGTGCGCGTGCTG
1 GGGTGCGCGTGCTG
69434 GG
1 GG
69436 TGTGACGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (14 bp):
GGGTGCGCGTGCTG
Left flanking sequence: Indices 68906 -- 69405
CCGCCCGGGCCCGGCTATTTCCACGCGCGCTGAAAATGTCGGCTGGAACCCGGCACTAACGGCGT
TCCACCATGCAGATAAGACGAGGGGAGTGGGGAAGCTTCGCGGGCGAACAGGGGTAGAGGCACCA
CACGAGGCGTTTTGGGAACCCTGGGTGCGCAGTAGTGGGTCGGGGTGGCCAACAATGGGGTGTGG
CCCGACCCGGCGATGAGCTCGGGTAAGGGTTCGTGACGGAGATGGTCACGGCGACGTAGCCGTGT
AACCGACGAGAGATGACTAGCAAGGATGACGGTGACAGCGTTGCTGTGTACGGGTAGAGTGCGTA
GAGTGAGTAGAGCGAAAGATGGTGGTGACCACACGTGGCGGGCGTGGGTGTCCCGGGACGGTTAC
CCCTCGAGTGACTCGGGAATTTTCTTGGACGCCTCGTGGAATTTGGTGGTATGGGGCGAGTGGAC
GAGGCGAGTTTAGTGGAGATGCGTGGGATGGGGGTATGCGGCAGC
Right flanking sequence: Indices 69436 -- 69935
TGTGACGGTTTGGCGGTGGACCGCTTCTGTGCGGGCTAGTTGCCGCTAGCGTAACCTTAATTCGG
TAAGTGCGTGTTTTACCGAGCCGACCGTTGAATGTGGCATGAGAGGAACGGAGAGGGGTGGTTAG
ACGGTGGTTACGTGTTTATGGGTGATTAGAGTGTGGTTTTTAGGTGTGCTAGTTTTCTACGGTGA
CATTTTGGTGACGGATACGGGTGACCTCGTGTGTTATTGTTTATGCCCGTTTGGGTAGTGTAATG
AACGTTATCGGTAGGTTAATGTACGGCAAAGGGTGGAAGAGGGGTGGAGAAACTGGAGAGAAAAG
GAGGTGGTGAGAAAGTGGAGGAGGTGGTGGGAAGGCGGTGGGAGGGCGGTGAGACGGTGGTGGGA
AGGTGGTGGAAAGAGTTTACGGGGTTCCCCGGGGGCTTAGGCGTCGTGATGGAAATATTAGCCGA
CACAAAGGCGATGGTTGCTAAATGAGTGGCCATGGTGATTAGACG
Found at i:69802 original size:11 final size:11
Alignment explanation
Indices: 69786--69834 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
69776 TGGAGGAGGT
69786 GGTGGGAAGGC
1 GGTGGGAAGGC
*
69797 GGTGGGAGGGC
1 GGTGGGAAGGC
* * *
69808 GGTGAGACGGT
1 GGTGGGAAGGC
*
69819 GGTGGGAAGGT
1 GGTGGGAAGGC
69830 GGTGG
1 GGTGG
69835 AAAGAGTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.14, C:0.06, G:0.65, T:0.14
Consensus pattern (11 bp):
GGTGGGAAGGC
Left flanking sequence: Indices 69286 -- 69785
GGACGGTTACCCCTCGAGTGACTCGGGAATTTTCTTGGACGCCTCGTGGAATTTGGTGGTATGGG
GCGAGTGGACGAGGCGAGTTTAGTGGAGATGCGTGGGATGGGGGTATGCGGCAGCGGGTGCGCGT
GCTGGGGTGCGCGTGCTGGGTGTGACGGTTTGGCGGTGGACCGCTTCTGTGCGGGCTAGTTGCCG
CTAGCGTAACCTTAATTCGGTAAGTGCGTGTTTTACCGAGCCGACCGTTGAATGTGGCATGAGAG
GAACGGAGAGGGGTGGTTAGACGGTGGTTACGTGTTTATGGGTGATTAGAGTGTGGTTTTTAGGT
GTGCTAGTTTTCTACGGTGACATTTTGGTGACGGATACGGGTGACCTCGTGTGTTATTGTTTATG
CCCGTTTGGGTAGTGTAATGAACGTTATCGGTAGGTTAATGTACGGCAAAGGGTGGAAGAGGGGT
GGAGAAACTGGAGAGAAAAGGAGGTGGTGAGAAAGTGGAGGAGGT
Right flanking sequence: Indices 69835 -- 70334
AAAGAGTTTACGGGGTTCCCCGGGGGCTTAGGCGTCGTGATGGAAATATTAGCCGACACAAAGGC
GATGGTTGCTAAATGAGTGGCCATGGTGATTAGACGATGCTTGGCACACGTTGCTGAGTGACGTT
CAAACATCGTGATTTAAGCCAATGTTTCTTAGCATAGTACAAAATATTTGTTAAAAATTTGGAAA
GAATGTGGAAACGGACGGATTTAACCAACCACTCGTACCGGGTTCGAACCGAAGAAACCAGGTCC
ATTGGCGTAGCACGTAACTAGCGTAGTCAAGCATTTGACAGAATCTACACATCTCGAGCGATTCA
AGCCTGGTGTACAAGAGGGGTTAAGATATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCAT
GGGCAACGTGTGTCTAGAAGTCAACAAGCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGTA
TCCACCTGCCTCCAACCATATAGCCTACCACAACCACATCAAAAT
Found at i:69833 original size:22 final size:22
Alignment explanation
Indices: 69782--69833 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
69772 AAAGTGGAGG
*
69782 AGGTGGTGGGAAGGCGGTGGGA
1 AGGTGGTGAGAAGGCGGTGGGA
* * * *
69804 GGGCGGTGAGACGGTGGTGGGA
1 AGGTGGTGAGAAGGCGGTGGGA
69826 AGGTGGTG
1 AGGTGGTG
69834 GAAAGAGTTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.06, G:0.63, T:0.15
Consensus pattern (22 bp):
AGGTGGTGAGAAGGCGGTGGGA
Left flanking sequence: Indices 69282 -- 69781
CCCGGGACGGTTACCCCTCGAGTGACTCGGGAATTTTCTTGGACGCCTCGTGGAATTTGGTGGTA
TGGGGCGAGTGGACGAGGCGAGTTTAGTGGAGATGCGTGGGATGGGGGTATGCGGCAGCGGGTGC
GCGTGCTGGGGTGCGCGTGCTGGGTGTGACGGTTTGGCGGTGGACCGCTTCTGTGCGGGCTAGTT
GCCGCTAGCGTAACCTTAATTCGGTAAGTGCGTGTTTTACCGAGCCGACCGTTGAATGTGGCATG
AGAGGAACGGAGAGGGGTGGTTAGACGGTGGTTACGTGTTTATGGGTGATTAGAGTGTGGTTTTT
AGGTGTGCTAGTTTTCTACGGTGACATTTTGGTGACGGATACGGGTGACCTCGTGTGTTATTGTT
TATGCCCGTTTGGGTAGTGTAATGAACGTTATCGGTAGGTTAATGTACGGCAAAGGGTGGAAGAG
GGGTGGAGAAACTGGAGAGAAAAGGAGGTGGTGAGAAAGTGGAGG
Right flanking sequence: Indices 69834 -- 70333
GAAAGAGTTTACGGGGTTCCCCGGGGGCTTAGGCGTCGTGATGGAAATATTAGCCGACACAAAGG
CGATGGTTGCTAAATGAGTGGCCATGGTGATTAGACGATGCTTGGCACACGTTGCTGAGTGACGT
TCAAACATCGTGATTTAAGCCAATGTTTCTTAGCATAGTACAAAATATTTGTTAAAAATTTGGAA
AGAATGTGGAAACGGACGGATTTAACCAACCACTCGTACCGGGTTCGAACCGAAGAAACCAGGTC
CATTGGCGTAGCACGTAACTAGCGTAGTCAAGCATTTGACAGAATCTACACATCTCGAGCGATTC
AAGCCTGGTGTACAAGAGGGGTTAAGATATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCA
TGGGCAACGTGTGTCTAGAAGTCAACAAGCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGT
ATCCACCTGCCTCCAACCATATAGCCTACCACAACCACATCAAAA
Found at i:70579 original size:21 final size:21
Alignment explanation
Indices: 70553--70610 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
70543 TCTCCCATTC
**
70553 TACCACCCATGCCACCACTGA
1 TACCACCCATGCCACCACCAA
* *
70574 TACCACCCAAGCTACCACCAA
1 TACCACCCATGCCACCACCAA
* *
70595 AACCACCCATACCACC
1 TACCACCCATGCCACC
70611 TACTTTTCAT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.50, G:0.05, T:0.10
Consensus pattern (21 bp):
TACCACCCATGCCACCACCAA
Left flanking sequence: Indices 70053 -- 70552
ACCAACCACTCGTACCGGGTTCGAACCGAAGAAACCAGGTCCATTGGCGTAGCACGTAACTAGCG
TAGTCAAGCATTTGACAGAATCTACACATCTCGAGCGATTCAAGCCTGGTGTACAAGAGGGGTTA
AGATATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCATGGGCAACGTGTGTCTAGAAGTCA
ACAAGCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGTATCCACCTGCCTCCAACCATATAG
CCTACCACAACCACATCAAAATACCATACTCTGACCACACCAATCCCTCCAACCAACAACCACAT
CAAACATAACGCACAACCCCCTCTCCAATTCACTACCCCAACCCCCAATGCATTAAATGATCAAC
AACGCCAACCACTACTTGTAAAAGCCAAAAACACCGACTACGAAACCAACCACTTAAGGCAACCT
CGAGGATATAAAACATTCAACAAGCATAATACCACTCTCCCATTC
Right flanking sequence: Indices 70611 -- 71110
TACTTTTCATACCACTCGTGCAAGCCACACACACTAGCCTACCCAAATGGGTGTAGATACTATTA
CAGCGTTAACAATACTAATCCCACCAACCATACTAGATCCCAACCAACACACTCAACTGTACATT
AACTACAACACAATGCAAACCACCCATATGGCTAACCATCCGTGCGTACGGCCCTAGTTCAACCA
CCCATACTACCCTACTAACCTCCACGCCAACCACCCTACTAACCTCCACGCCAACCACCCTACTA
ACCTCACCACGCCCCCACCTTACCACCCCACCACGCCCCCCTTACTGAATTTAAATTATAATACA
ATGCACCGCACTACTTTATAGAGATGTATTATTAGAGATGCTATAAAATGGGCTCATAAGATGTA
GTCGCCAGCCTAAAACTGGAAGTTCTGGTTCTGCTGTCCCTGCTGCAAGCCAAAGTTGTAGTGGG
AGTCGTACGCCGCCGGCGCCGTCATGTCGTCCTCGATCCCCTCGT
Found at i:70710 original size:18 final size:20
Alignment explanation
Indices: 70687--70723 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
70677 AGCGTTAACA
70687 ATACTA-ATCCC-ACCAACC
1 ATACTAGATCCCAACCAACC
70705 ATACTAGATCCCAACCAAC
1 ATACTAGATCCCAACCAAC
70724 ACACTCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.41, G:0.03, T:0.16
Consensus pattern (20 bp):
ATACTAGATCCCAACCAACC
Left flanking sequence: Indices 70187 -- 70686
ATCCCCGCGTTCATGGCTAGCGACAGTAATAGCCCCATGGGCAACGTGTGTCTAGAAGTCAACAA
GCATAAACAGACTGTCAAGCTTGGCTGGCTTACCAGTATCCACCTGCCTCCAACCATATAGCCTA
CCACAACCACATCAAAATACCATACTCTGACCACACCAATCCCTCCAACCAACAACCACATCAAA
CATAACGCACAACCCCCTCTCCAATTCACTACCCCAACCCCCAATGCATTAAATGATCAACAACG
CCAACCACTACTTGTAAAAGCCAAAAACACCGACTACGAAACCAACCACTTAAGGCAACCTCGAG
GATATAAAACATTCAACAAGCATAATACCACTCTCCCATTCTACCACCCATGCCACCACTGATAC
CACCCAAGCTACCACCAAAACCACCCATACCACCTACTTTTCATACCACTCGTGCAAGCCACACA
CACTAGCCTACCCAAATGGGTGTAGATACTATTACAGCGTTAACA
Right flanking sequence: Indices 70724 -- 71223
ACACTCAACTGTACATTAACTACAACACAATGCAAACCACCCATATGGCTAACCATCCGTGCGTA
CGGCCCTAGTTCAACCACCCATACTACCCTACTAACCTCCACGCCAACCACCCTACTAACCTCCA
CGCCAACCACCCTACTAACCTCACCACGCCCCCACCTTACCACCCCACCACGCCCCCCTTACTGA
ATTTAAATTATAATACAATGCACCGCACTACTTTATAGAGATGTATTATTAGAGATGCTATAAAA
TGGGCTCATAAGATGTAGTCGCCAGCCTAAAACTGGAAGTTCTGGTTCTGCTGTCCCTGCTGCAA
GCCAAAGTTGTAGTGGGAGTCGTACGCCGCCGGCGCCGTCATGTCGTCCTCGATCCCCTCGTCCT
CCTCGCCAAAGTAGGTGTCGATGATGGCAAACGCCTTGTCGTAGATCTTGTCGTTGTCGTTCAGC
TGGCACGCAAAAATCTTCTCCATGCCCCCGGCCTCCTCGATCCAC
Found at i:70841 original size:24 final size:24
Alignment explanation
Indices: 70814--70875 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
70804 CACCCATACT
70814 ACCCTACTAACCTCCACGCCAACC
1 ACCCTACTAACCTCCACGCCAACC
70838 ACCCTACTAACCTCCACGCCAACC
1 ACCCTACTAACCTCCACGCCAACC
70862 ACCCTACTAACCTC
1 ACCCTACTAACCTC
70876 ACCACGCCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.29, C:0.53, G:0.03, T:0.15
Consensus pattern (24 bp):
ACCCTACTAACCTCCACGCCAACC
Left flanking sequence: Indices 70314 -- 70813
CTACCACAACCACATCAAAATACCATACTCTGACCACACCAATCCCTCCAACCAACAACCACATC
AAACATAACGCACAACCCCCTCTCCAATTCACTACCCCAACCCCCAATGCATTAAATGATCAACA
ACGCCAACCACTACTTGTAAAAGCCAAAAACACCGACTACGAAACCAACCACTTAAGGCAACCTC
GAGGATATAAAACATTCAACAAGCATAATACCACTCTCCCATTCTACCACCCATGCCACCACTGA
TACCACCCAAGCTACCACCAAAACCACCCATACCACCTACTTTTCATACCACTCGTGCAAGCCAC
ACACACTAGCCTACCCAAATGGGTGTAGATACTATTACAGCGTTAACAATACTAATCCCACCAAC
CATACTAGATCCCAACCAACACACTCAACTGTACATTAACTACAACACAATGCAAACCACCCATA
TGGCTAACCATCCGTGCGTACGGCCCTAGTTCAACCACCCATACT
Right flanking sequence: Indices 70876 -- 71375
ACCACGCCCCCACCTTACCACCCCACCACGCCCCCCTTACTGAATTTAAATTATAATACAATGCA
CCGCACTACTTTATAGAGATGTATTATTAGAGATGCTATAAAATGGGCTCATAAGATGTAGTCGC
CAGCCTAAAACTGGAAGTTCTGGTTCTGCTGTCCCTGCTGCAAGCCAAAGTTGTAGTGGGAGTCG
TACGCCGCCGGCGCCGTCATGTCGTCCTCGATCCCCTCGTCCTCCTCGCCAAAGTAGGTGTCGAT
GATGGCAAACGCCTTGTCGTAGATCTTGTCGTTGTCGTTCAGCTGGCACGCAAAAATCTTCTCCA
TGCCCCCGGCCTCCTCGATCCACATGGCGTTCTCGTTCACCTTCAACCCCTTGGCCTCCTTGGCC
ATCTCCCCCATCCGCAAGATGTTCTCGAGCGAGTCGAGCGTCACCTCGATGATCTTGGCGTCGGC
AATCGTCAACAAGTCGCACAACGGCTTGATGCACCCCTGCTGCAC
Found at i:72745 original size:8 final size:8
Alignment explanation
Indices: 72728--72767 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
72718 GGTGATGAGA
72728 GGTGGGGT
1 GGTGGGGT
*
72736 GGTGGAGT
1 GGTGGGGT
72744 GGTGGGGT
1 GGTGGGGT
*
72752 GGAGGGGTT
1 GGTGGGG-T
72761 GGTGGGG
1 GGTGGGG
72768 GGATTGGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.05, C:0.00, G:0.72, T:0.23
Consensus pattern (8 bp):
GGTGGGGT
Left flanking sequence: Indices 72228 -- 72727
GCTCATGAACTGCACCAAAATGGGGATCACCCCCAGCTCAATCACCAAGTCGATGGGCGGCTTGT
GCTCGCGCAGCAAGATCTGGCGGAACTTGACGGTGGCCGCGAGCTTCTGTTCAAAGTCGTTCAGC
TGGATCATCTCCAACATCTTGGGCAACTCTGCGCGCAACTGCGAGTCCATCGCCGCCAGCAGGGC
CGCGGGGTCGATTGCGCCCATCTGCCACTCGGCAGCCTCGTCCTCCTCCAGCTCGTTGCCGTCCT
GGGGGACAAAGTTGCGGCGTTTCAGCAACATTTCCTCGCGCTTCTGCTTGCGGAGGTCCACCTGG
TGGTTCTCGCGGCGGCGCCGGAGCTCGTCGTTGGCAAAGCGGCCCTTGTTTTTGAACTGGGTCCG
GCGGTACTCGGGCACAAAGCGGTTGGTGGCGTCGCTGTCCATGGTGGTCGTAGTGGCAACGGTGG
AAAAAAGTTCGAAAAAAGTGCGTGGGACGGTGGAAGGTGATGAGA
Right flanking sequence: Indices 72768 -- 72820
GGATTGGTTGGGGGAGTGGTGGGTGTGGGTGTGTCTAGAGCGGGTGTGTGGGC
Found at i:72774 original size:12 final size:12
Alignment explanation
Indices: 72749--72790 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
72739 GGAGTGGTGG
72749 GGTGGAGGGG-TT
1 GGTGG-GGGGATT
72761 GGTGGGGGGATT
1 GGTGGGGGGATT
* *
72773 GGTTGGGGGAGT
1 GGTGGGGGGATT
72785 GGTGGG
1 GGTGGG
72791 TGTGGGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.07, C:0.00, G:0.69, T:0.24
Consensus pattern (12 bp):
GGTGGGGGGATT
Left flanking sequence: Indices 72249 -- 72748
GGGGATCACCCCCAGCTCAATCACCAAGTCGATGGGCGGCTTGTGCTCGCGCAGCAAGATCTGGC
GGAACTTGACGGTGGCCGCGAGCTTCTGTTCAAAGTCGTTCAGCTGGATCATCTCCAACATCTTG
GGCAACTCTGCGCGCAACTGCGAGTCCATCGCCGCCAGCAGGGCCGCGGGGTCGATTGCGCCCAT
CTGCCACTCGGCAGCCTCGTCCTCCTCCAGCTCGTTGCCGTCCTGGGGGACAAAGTTGCGGCGTT
TCAGCAACATTTCCTCGCGCTTCTGCTTGCGGAGGTCCACCTGGTGGTTCTCGCGGCGGCGCCGG
AGCTCGTCGTTGGCAAAGCGGCCCTTGTTTTTGAACTGGGTCCGGCGGTACTCGGGCACAAAGCG
GTTGGTGGCGTCGCTGTCCATGGTGGTCGTAGTGGCAACGGTGGAAAAAAGTTCGAAAAAAGTGC
GTGGGACGGTGGAAGGTGATGAGAGGTGGGGTGGTGGAGTGGTGG
Right flanking sequence: Indices 72791 -- 72820
TGTGGGTGTGTCTAGAGCGGGTGTGTGGGC
Done.