sallet_2.scaffold.fasta.s60.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold79
Parameters: 2 7 7 80 10 50 500
Length:  97201

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164--231	20	3.4	20	82	8	66	32	0	50	17	1.47
183--243	20	3.0	21	85	9	81	34	1	47	16	1.56
711--794	26	3.2	26	87	1	123	27	27	17	27	1.98
784--854	23	3.2	23	80	11	85	22	39	15	22	1.92
1266--1311	18	2.7	18	87	9	62	15	39	10	34	1.82
2694--2798	39	2.7	39	75	5	95	13	28	49	8	1.71
2852--2889	15	2.5	15	100	0	76	31	15	52	0	1.43
2860--2898	12	2.9	13	88	11	53	33	15	51	0	1.44
3402--3442	21	2.0	21	95	0	73	21	39	39	0	1.54
4309--4343	12	2.9	12	82	0	52	2	22	45	28	1.67
4359--4405	21	2.2	21	96	0	85	0	36	34	29	1.58
6110--6144	12	2.9	12	95	0	61	17	37	22	22	1.94
8295--8355	15	4.1	15	89	0	86	26	9	37	26	1.87
9604--9640	11	3.4	11	88	0	56	27	2	45	24	1.66
9972--10017	16	2.8	17	80	6	67	28	56	4	10	1.53
13493--13537	13	3.5	13	96	3	83	55	0	28	15	1.41
13625--13670	14	3.3	14	90	6	58	30	23	17	28	1.97
13633--13670	14	2.8	14	96	4	69	28	26	15	28	1.96
19809--19870	21	3.0	21	78	0	61	40	14	45	0	1.45
19868--19894	12	2.2	12	100	0	54	44	22	33	0	1.53
27088--27146	8	7.2	8	81	11	75	5	0	61	33	1.18
27281--27320	15	2.7	15	100	0	80	12	0	47	40	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27394--27426	16	2.0	17	88	5	50	66	0	21	12	1.23
27961--27996	18	2.0	18	88	0	54	11	50	16	22	1.77
29095--29132	9	4.2	9	93	0	67	23	21	13	42	1.88
31616--31658	17	2.5	17	100	0	86	13	44	11	30	1.80
32497--32534	16	2.4	16	83	12	51	44	0	50	5	1.24
39139--39188	18	2.8	18	93	3	84	18	30	46	6	1.73
39660--39699	11	3.6	11	96	0	71	22	0	60	17	1.37
39648--39699	22	2.6	19	75	16	59	21	1	59	17	1.47
39752--39788	9	4.1	9	100	0	74	10	10	56	21	1.64
40311--40395	18	4.6	19	79	5	93	32	22	15	29	1.94
42319--42351	14	2.3	15	89	5	50	18	3	60	18	1.49
42364--42395	10	3.2	10	90	0	55	12	0	68	18	1.20
42791--42820	12	2.5	12	100	0	60	26	30	26	16	1.97
42821--42875	12	4.6	11	82	13	65	18	50	10	20	1.76
47515--47630	22	5.4	21	76	5	108	25	6	21	46	1.74
47513--47630	43	2.7	44	79	10	136	25	5	22	46	1.74
49195--49219	11	2.3	11	100	0	50	40	16	36	8	1.77
53067--53235	22	7.4	22	76	12	135	8	25	15	50	1.71
53159--53208	27	1.9	27	84	8	68	10	24	14	52	1.71
55754--55799	17	2.7	18	86	6	60	13	15	26	45	1.82
62839--62870	15	2.1	15	100	0	64	25	18	40	15	1.90
65858--65897	11	3.6	11	80	12	55	17	2	50	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66454--66502	9	5.4	9	85	9	64	16	2	24	57	1.50
66469--66514	19	2.5	18	82	3	56	17	4	26	52	1.63
68008--68039	14	2.4	13	94	5	55	15	28	28	28	1.96
74519--74549	14	2.3	13	94	5	53	22	16	6	54	1.64
74508--74594	18	5.1	18	76	10	83	27	19	4	48	1.68
74785--74837	18	3.2	18	66	20	51	28	20	5	45	1.74
74825--74943	14	8.1	14	70	20	82	22	24	8	44	1.80
74873--74941	27	2.5	27	83	6	77	26	23	7	43	1.79
74900--74955	28	2.0	28	82	6	69	23	28	7	41	1.80
77063--77092	11	2.7	11	94	0	51	16	0	56	26	1.40
77568--77628	11	5.7	11	73	5	54	40	40	3	14	1.62
77568--77635	21	3.2	21	89	2	91	41	41	2	14	1.61
77681--77735	1	55.0	1	100	0	110	0	0	100	0	0.00
77850--77894	6	7.8	6	80	14	51	31	53	2	13	1.52
77849--77925	15	4.9	15	76	13	75	31	54	3	10	1.52
77999--78049	17	3.1	17	97	2	95	23	33	7	35	1.84
78960--78997	17	2.2	18	90	4	60	5	0	65	28	1.14
79033--79075	12	3.6	12	77	0	50	4	2	51	41	1.35
79473--79502	12	2.5	12	94	0	51	10	36	20	33	1.86
79835--79878	17	2.6	17	85	0	70	13	45	0	40	1.44
79990--80029	5	8.4	5	83	10	57	40	57	0	2	1.12
79986--80029	13	3.2	13	81	18	54	40	56	0	2	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81072--81154	36	2.3	37	83	10	100	30	14	28	26	1.95
82510--83049	1	540.0	1	100	0	1080	100	0	0	0	0.00
83040--83094	26	2.1	26	89	0	83	56	16	10	16	1.67
83248--83296	15	3.3	15	97	0	89	4	40	34	20	1.71
83241--83323	24	3.2	24	70	18	67	6	42	33	18	1.74
83243--83326	30	3.0	29	72	19	88	5	42	33	17	1.74
83296--83332	15	2.4	15	90	4	56	2	45	37	13	1.58
85495--85519	12	2.1	12	100	0	50	0	0	52	48	1.00
85557--85597	20	2.2	19	91	8	66	14	0	51	34	1.43
86211--86254	22	2.0	23	90	4	72	25	45	13	15	1.83
86870--86904	9	3.8	9	92	3	52	0	28	22	48	1.51
86962--87023	21	3.0	21	88	2	99	1	37	11	50	1.48
89554--89586	12	2.8	12	95	0	57	9	42	27	21	1.83
90349--90382	9	3.8	9	96	0	59	0	0	70	29	0.87
90633--90676	17	2.9	14	78	18	52	43	0	36	20	1.52
90640--90673	17	2.0	17	100	0	68	35	0	41	23	1.55
90764--90817	15	3.6	15	92	0	90	33	14	20	31	1.93
90901--90976	23	3.3	23	83	1	82	19	34	15	30	1.93
90912--90980	23	3.0	23	84	0	84	18	37	14	28	1.91
91052--91134	10	8.7	10	81	9	93	25	51	13	9	1.70
91052--91103	17	2.8	18	88	8	70	25	53	13	7	1.65
91060--91134	27	2.7	29	89	8	111	25	50	14	9	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91052--91123	37	1.9	37	88	0	108	25	52	12	9	1.69
91387--91459	24	3.1	24	92	2	112	19	50	16	13	1.77
91392--91475	23	3.6	24	87	7	104	17	52	15	14	1.75
91965--91991	9	3.0	9	100	0	54	33	44	11	11	1.75
91993--92040	20	2.3	22	85	7	64	37	50	6	6	1.53
93617--93682	14	4.7	14	79	5	53	45	34	6	13	1.68
93616--93654	13	2.8	14	80	11	53	41	33	7	17	1.79
93645--93694	14	3.6	14	86	0	73	46	42	4	8	1.52
93682--93714	10	3.3	10	100	0	66	33	57	0	9	1.30
95110--95153	9	4.6	9	78	15	52	34	52	2	11	1.50
95113--95155	21	2.0	21	95	0	77	32	51	2	13	1.54
95119--95186	21	3.2	21	87	0	100	27	47	7	17	1.74

Tables:   1

The End!