Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold79
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 97201
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:189 original size:20 final size:20
Alignment explanation
Indices: 164--231 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
154 GATAGGAAGA
* *
164 ATAGTGGAGGGTGGAAGTGG
1 ATAGTGGAGAGAGGAAGTGG
*
184 ATAGTGGAGAGAGGAGGTGG
1 ATAGTGGAGAGAGGAAGTGG
* * *
204 A-AGTGGAAGATAGGAGGTAG
1 ATAGTGG-AGAGAGGAAGTGG
224 ATAGTGGA
1 ATAGTGGA
232 AGATAGGCAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 5 0.12
20 31 0.76
21 5 0.12
ACGTcount: A:0.32, C:0.00, G:0.50, T:0.18
Consensus pattern (20 bp):
ATAGTGGAGAGAGGAAGTGG
Left flanking sequence: Indices 1 -- 163
ACGTAACTTATACTTCGACCTTCAAATAGTTATTTTTGAGTGCATTTTTGGACTTCCGGAATTTT
CTTATTCCGAATAATTATGTAACGACTGTACATGTTCATGCATGGAATGTCGTAAACGCGCATTG
GTGGGGCGAGGACGAATACGAGAGATAGGAAGA
Right flanking sequence: Indices 232 -- 731
AGATAGGCAGGTGGACAACGGGAAGAGTGGTAAGAACAGCGCATAGCGGAAAGAACAGTTCTTAT
ACCTCAGTAGTACGCTACCCACAGCCCGAATAGTACACTACATGAAATTCATGAAACACAGTCCA
CTTTCCGCCATGAGCATGCGCTCCCCGCAGCACCGTCTCACTGGGCACAGATAACCACGAAAATT
CCCCTTTGCGGCATGCCTTTGCGCCATGCCGAGGCCCATCAGCGTGTGATCGAGTGGTGTGATTC
CGTGGGGTGATCTCGACGTGCATATAAACTTCCGTGACCCCTCGGGGTATAAATAGGGGCCGCCT
CAGCGTGTGGTTTTGCTGGATAACCACCACATAGATCCATGGCGATAGACGAGTACCCCAACTTT
CTGTGCTTTAATGCTAAGCCAGGTGTTGCACTCACCTAGTCAAGTGTTGCTAAACCACTCACCTA
GTCACCTCGCCAGGTGTTGCTAACCACCTAGTCAGGTGTTGCTAA
Found at i:231 original size:21 final size:21
Alignment explanation
Indices: 183--243 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 21
173 GGTGGAAGTG
* *
183 GATAGTGG-AGAGAGGAGGTG
1 GATAGTGGAAGATAGGAGGTA
203 GA-AGTGGAAGATAGGAGGTA
1 GATAGTGGAAGATAGGAGGTA
223 GATAGTGGAAGATAGGCAGGT
1 GATAGTGGAAGATAGG-AGGT
244 GGACAACGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.14
20 14 0.39
21 13 0.36
22 4 0.11
ACGTcount: A:0.34, C:0.02, G:0.48, T:0.16
Consensus pattern (21 bp):
GATAGTGGAAGATAGGAGGTA
Left flanking sequence: Indices 1 -- 182
ACGTAACTTATACTTCGACCTTCAAATAGTTATTTTTGAGTGCATTTTTGGACTTCCGGAATTTT
CTTATTCCGAATAATTATGTAACGACTGTACATGTTCATGCATGGAATGTCGTAAACGCGCATTG
GTGGGGCGAGGACGAATACGAGAGATAGGAAGAATAGTGGAGGGTGGAAGTG
Right flanking sequence: Indices 244 -- 743
GGACAACGGGAAGAGTGGTAAGAACAGCGCATAGCGGAAAGAACAGTTCTTATACCTCAGTAGTA
CGCTACCCACAGCCCGAATAGTACACTACATGAAATTCATGAAACACAGTCCACTTTCCGCCATG
AGCATGCGCTCCCCGCAGCACCGTCTCACTGGGCACAGATAACCACGAAAATTCCCCTTTGCGGC
ATGCCTTTGCGCCATGCCGAGGCCCATCAGCGTGTGATCGAGTGGTGTGATTCCGTGGGGTGATC
TCGACGTGCATATAAACTTCCGTGACCCCTCGGGGTATAAATAGGGGCCGCCTCAGCGTGTGGTT
TTGCTGGATAACCACCACATAGATCCATGGCGATAGACGAGTACCCCAACTTTCTGTGCTTTAAT
GCTAAGCCAGGTGTTGCACTCACCTAGTCAAGTGTTGCTAAACCACTCACCTAGTCACCTCGCCA
GGTGTTGCTAACCACCTAGTCAGGTGTTGCTAAACCACTCATCTA
Found at i:750 original size:26 final size:26
Alignment explanation
Indices: 711--794 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 26
701 TGTTGCTAAC
711 CACCTAGTCAGGTGTTGCTAAACCACT
1 CACCTAG-CAGGTGTTGCTAAACCACT
* *
738 CATCTAGCAGGTGTTGCTAAATCACT
1 CACCTAGCAGGTGTTGCTAAACCACT
*
764 CACCTAGCAGGTGTTGCTAAACTACT
1 CACCTAGCAGGTGTTGCTAAACCACT
*
790 AACCT
1 CACCT
795 TAGTCAGGCG
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 45 0.88
27 6 0.12
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
CACCTAGCAGGTGTTGCTAAACCACT
Left flanking sequence: Indices 211 -- 710
AGATAGGAGGTAGATAGTGGAAGATAGGCAGGTGGACAACGGGAAGAGTGGTAAGAACAGCGCAT
AGCGGAAAGAACAGTTCTTATACCTCAGTAGTACGCTACCCACAGCCCGAATAGTACACTACATG
AAATTCATGAAACACAGTCCACTTTCCGCCATGAGCATGCGCTCCCCGCAGCACCGTCTCACTGG
GCACAGATAACCACGAAAATTCCCCTTTGCGGCATGCCTTTGCGCCATGCCGAGGCCCATCAGCG
TGTGATCGAGTGGTGTGATTCCGTGGGGTGATCTCGACGTGCATATAAACTTCCGTGACCCCTCG
GGGTATAAATAGGGGCCGCCTCAGCGTGTGGTTTTGCTGGATAACCACCACATAGATCCATGGCG
ATAGACGAGTACCCCAACTTTCTGTGCTTTAATGCTAAGCCAGGTGTTGCACTCACCTAGTCAAG
TGTTGCTAAACCACTCACCTAGTCACCTCGCCAGGTGTTGCTAAC
Right flanking sequence: Indices 795 -- 1294
TAGTCAGGCGCTACTACCAACCTTCCAGGCGCTACTCCTACCTTAGCCAGGCGCTCCTACAGGCG
CGTTGCCTAAATTACTAACCTCTAGCGAAGACACACCCCCGGTGAAGACCAGTGTAAACACGGCG
AATGGATCCCGACGATGTTGTAGCGCTACCCCGTGGCCCGCGAGGGCGCGGTGGCGGCCTTTCCG
CGGTTCCTGCCAATACACGCTTGCATCTTGCTTCTACCCGGAACACGTATTGTATGCTTTGCTGC
CGCTACTCCACCCAGTGCGGCTAGCGGCCTGCTCGGCACTCTGCCCGGCGGCCCCCTAGTATAAT
TCCACGTCGCTTCTGTTTTTAGTTGCCTAGTTAGTTGCCCGTCCAGTTTCTAGAGTGTCTAGGCG
TCTAGTGCTCTGTTACTGTTGCCCGTCCGTACTCCGTAACCATGGGTTGTTTTTCTCTTGACCGT
GATCTATGGCCCATGCAGTCCCTTGTCCTATCCTAGTCCCTAGTC
Found at i:847 original size:22 final size:23
Alignment explanation
Indices: 784--854 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
774 GTGTTGCTAA
* *
784 ACTACTAACCTTAGTCAGGCGCT
1 ACTACCAACCTTAGCCAGGCGCT
807 ACTACCAACCTT--CCAGGCGCT
1 ACTACCAACCTTAGCCAGGCGCT
*
828 ACT-CCTACCTTAGCCAGGCGCT
1 ACTACCAACCTTAGCCAGGCGCT
*
850 CCTAC
1 ACTAC
855 AGGCGCGTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 7 0.17
21 11 0.27
22 11 0.27
23 12 0.29
ACGTcount: A:0.23, C:0.39, G:0.15, T:0.23
Consensus pattern (23 bp):
ACTACCAACCTTAGCCAGGCGCT
Left flanking sequence: Indices 284 -- 783
GAACAGTTCTTATACCTCAGTAGTACGCTACCCACAGCCCGAATAGTACACTACATGAAATTCAT
GAAACACAGTCCACTTTCCGCCATGAGCATGCGCTCCCCGCAGCACCGTCTCACTGGGCACAGAT
AACCACGAAAATTCCCCTTTGCGGCATGCCTTTGCGCCATGCCGAGGCCCATCAGCGTGTGATCG
AGTGGTGTGATTCCGTGGGGTGATCTCGACGTGCATATAAACTTCCGTGACCCCTCGGGGTATAA
ATAGGGGCCGCCTCAGCGTGTGGTTTTGCTGGATAACCACCACATAGATCCATGGCGATAGACGA
GTACCCCAACTTTCTGTGCTTTAATGCTAAGCCAGGTGTTGCACTCACCTAGTCAAGTGTTGCTA
AACCACTCACCTAGTCACCTCGCCAGGTGTTGCTAACCACCTAGTCAGGTGTTGCTAAACCACTC
ATCTAGCAGGTGTTGCTAAATCACTCACCTAGCAGGTGTTGCTAA
Right flanking sequence: Indices 855 -- 1354
AGGCGCGTTGCCTAAATTACTAACCTCTAGCGAAGACACACCCCCGGTGAAGACCAGTGTAAACA
CGGCGAATGGATCCCGACGATGTTGTAGCGCTACCCCGTGGCCCGCGAGGGCGCGGTGGCGGCCT
TTCCGCGGTTCCTGCCAATACACGCTTGCATCTTGCTTCTACCCGGAACACGTATTGTATGCTTT
GCTGCCGCTACTCCACCCAGTGCGGCTAGCGGCCTGCTCGGCACTCTGCCCGGCGGCCCCCTAGT
ATAATTCCACGTCGCTTCTGTTTTTAGTTGCCTAGTTAGTTGCCCGTCCAGTTTCTAGAGTGTCT
AGGCGTCTAGTGCTCTGTTACTGTTGCCCGTCCGTACTCCGTAACCATGGGTTGTTTTTCTCTTG
ACCGTGATCTATGGCCCATGCAGTCCCTTGTCCTATCCTAGTCCCTAGTCCTATCCATCCTAGTC
CTGTCCCTATCTCCGTCCTAGCCTTCTCTGCGCCAGGTTCCCGAC
Found at i:1308 original size:15 final size:18
Alignment explanation
Indices: 1266--1311 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
1256 TGGCCCATGC
*
1266 AGTCCCTTGTCCTATCCT
1 AGTCCCTAGTCCTATCCT
1284 AGTCCCTAGTCCTATCC-
1 AGTCCCTAGTCCTATCCT
1301 A-T-CCTAGTCCT
1 AGTCCCTAGTCCT
1312 GTCCCTATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 9 0.33
16 1 0.04
17 1 0.04
18 16 0.59
ACGTcount: A:0.15, C:0.39, G:0.11, T:0.35
Consensus pattern (18 bp):
AGTCCCTAGTCCTATCCT
Left flanking sequence: Indices 766 -- 1265
CCTAGCAGGTGTTGCTAAACTACTAACCTTAGTCAGGCGCTACTACCAACCTTCCAGGCGCTACT
CCTACCTTAGCCAGGCGCTCCTACAGGCGCGTTGCCTAAATTACTAACCTCTAGCGAAGACACAC
CCCCGGTGAAGACCAGTGTAAACACGGCGAATGGATCCCGACGATGTTGTAGCGCTACCCCGTGG
CCCGCGAGGGCGCGGTGGCGGCCTTTCCGCGGTTCCTGCCAATACACGCTTGCATCTTGCTTCTA
CCCGGAACACGTATTGTATGCTTTGCTGCCGCTACTCCACCCAGTGCGGCTAGCGGCCTGCTCGG
CACTCTGCCCGGCGGCCCCCTAGTATAATTCCACGTCGCTTCTGTTTTTAGTTGCCTAGTTAGTT
GCCCGTCCAGTTTCTAGAGTGTCTAGGCGTCTAGTGCTCTGTTACTGTTGCCCGTCCGTACTCCG
TAACCATGGGTTGTTTTTCTCTTGACCGTGATCTATGGCCCATGC
Right flanking sequence: Indices 1312 -- 1811
GTCCCTATCTCCGTCCTAGCCTTCTCTGCGCCAGGTTCCCGACTTTGACGAGCCGGGTATCCGGC
CCGACTCGCAGCCGGGAAATGGCGGCATCGCCGGGGTCCGCTGGTATGCTGGTCTTGGCCGTGGT
TGTGTCTTCTATCCATAAAGTACATAGTCCTATCGCATTTTCCTTCACCACCCAATGTAGTCGCG
GTCCACGGGCCGGAACACCCGCATCCGCCCCAGCTGGAAGTCGCCGATCTTGTAGCTCTCCTTGA
CCACTTGGTGCCCGTCCTGGCCCACCACCTTGATCTTCTGCTTCTTGGGGTCGTAGTCGTAGATG
ATGGCGGTGTGGATGTGGTCGTCGTCCCCGCCCACCAGCTTGCGCTTCTTGCCAATCAACTTCTT
CTCGGCAAACACCCCGTGCTTGATCCAGAGAATGTCGCCGGCGCGGATCTCGTCGATCTTGGCGA
TGTTGGCGTTGTTGAAGTTCTTGTAGATGGTGACGCCAAACGCCC
Found at i:2781 original size:39 final size:39
Alignment explanation
Indices: 2694--2798 Score: 95
Period size: 39 Copynumber: 2.7 Consensus size: 39
2684 GGAGGAGGCA
* * * *
2694 CGCGAGGCGCCTGGGGAGCCTGGCCGGGAACAGGCGGGG
1 CGCGAGGCGACTGCGGAGCCTGGCCAGGAACAGGCGGCG
* * * *
2733 C-CTGGGGCGACTGCGGAGTCTGGCCAGGCACGGGCGGCG
1 CGC-GAGGCGACTGCGGAGCCTGGCCAGGAACAGGCGGCG
* * *
2772 CGCGAGGCGACTGGGGAACTTGGCCAG
1 CGCGAGGCGACTGCGGAGCCTGGCCAG
2799 CAGCCGCGTG
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
38 1 0.02
39 49 0.96
40 1 0.02
ACGTcount: A:0.13, C:0.29, G:0.50, T:0.09
Consensus pattern (39 bp):
CGCGAGGCGACTGCGGAGCCTGGCCAGGAACAGGCGGCG
Left flanking sequence: Indices 2194 -- 2693
GAGCTGGCCCTGCAACCACCACCGCGAGGTGCCCGACACGTTGTTGGTCTCGTACTCAAGCTCCT
CCTTGGCCGCCTCGGCAAGCAGCTGGTCCTTGGACCGCACCAGCTTCAGCCGGTGGATGCTGTCA
ACGGAGGCACGGGACTGGAAGTCGCCGGCGGTGGTGGCGGCGTGGGGAACGGGCGCAGACGGCGG
CGCAGGCGCGTCGTCAAGCGAGCCCCGCCCGATGAAGCCCAGCAGGTCGGTGCGAGACCGGGCAA
GCCCCTGGGACGGAGCCGGGACCGGGACGGGAGGAGCCACTCCGGGAGGAGGAGGAGGCGGCTTG
TGGTCCAACAGAGGCGCGGTGGCCAGCCGGGCCGCCACCAGCGGGCCCAGCGGCGCGCCGTGGGT
GAGCATGGCCTCGTCGTCGCTCTCGTCCAGCGAGTCCGAGAAGTCCTCGGGCTCGTCGGGCCGGC
TGGGCGGCGGCGGAGGCACCTTGGCCTCCGGGACGGGAGGAGGCA
Right flanking sequence: Indices 2799 -- 3298
CAGCCGCGTGGCCAGGCACCGGTGGCATTCCCCGGTCGGAGGAAGGCACCGGTGGCACGGAGGAA
GGAGGCACGGAGGAAGGAGGCACGGAAGGAGGCACTCGGTCGGAGGGAGGAGGAGGCGGAGGCAT
CTTGTGGTCAGCGTGGCCAGCGTGGCCAGCAGCCAGCTGGGCTGGCGACTTTCTGGGCGCAAAGA
ACTCCAGCTCCAACGTGTCGGTGTCGATCCCCGGTGTCTGAGGCAACTCGCCGTGCGACGGCGAC
GACGGCGGCTCCATGTACCCGGGCTCACACGGCTTGGGGATGTCCTGCGGCGGCGGCGGGGGCGG
GTGGCGCGGCAGGGTGGGGCTGGCCAACGCCTCCTTGACCTTCAGCCGGTCGCTCAAGTCCTCGT
CCGCCTCGTAGCCCGGCTCCGGCGGCTCCAGCCGCTGGGTGGCCTCGAGAATGTGGATCGACCGC
AGCAGCAGCTCGTCGCCCAGGCCCTTGAGCGACGGCTGGCGCTTG
Found at i:2872 original size:15 final size:15
Alignment explanation
Indices: 2852--2889 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
2842 AGGCACCGGT
2852 GGCACGGAGGAAGGA
1 GGCACGGAGGAAGGA
2867 GGCACGGAGGAAGGA
1 GGCACGGAGGAAGGA
2882 GGCACGGA
1 GGCACGGA
2890 AGGAGGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.53, T:0.00
Consensus pattern (15 bp):
GGCACGGAGGAAGGA
Left flanking sequence: Indices 2352 -- 2851
CGGTGGTGGCGGCGTGGGGAACGGGCGCAGACGGCGGCGCAGGCGCGTCGTCAAGCGAGCCCCGC
CCGATGAAGCCCAGCAGGTCGGTGCGAGACCGGGCAAGCCCCTGGGACGGAGCCGGGACCGGGAC
GGGAGGAGCCACTCCGGGAGGAGGAGGAGGCGGCTTGTGGTCCAACAGAGGCGCGGTGGCCAGCC
GGGCCGCCACCAGCGGGCCCAGCGGCGCGCCGTGGGTGAGCATGGCCTCGTCGTCGCTCTCGTCC
AGCGAGTCCGAGAAGTCCTCGGGCTCGTCGGGCCGGCTGGGCGGCGGCGGAGGCACCTTGGCCTC
CGGGACGGGAGGAGGCACGCGAGGCGCCTGGGGAGCCTGGCCGGGAACAGGCGGGGCCTGGGGCG
ACTGCGGAGTCTGGCCAGGCACGGGCGGCGCGCGAGGCGACTGGGGAACTTGGCCAGCAGCCGCG
TGGCCAGGCACCGGTGGCATTCCCCGGTCGGAGGAAGGCACCGGT
Right flanking sequence: Indices 2890 -- 3389
AGGAGGCACTCGGTCGGAGGGAGGAGGAGGCGGAGGCATCTTGTGGTCAGCGTGGCCAGCGTGGC
CAGCAGCCAGCTGGGCTGGCGACTTTCTGGGCGCAAAGAACTCCAGCTCCAACGTGTCGGTGTCG
ATCCCCGGTGTCTGAGGCAACTCGCCGTGCGACGGCGACGACGGCGGCTCCATGTACCCGGGCTC
ACACGGCTTGGGGATGTCCTGCGGCGGCGGCGGGGGCGGGTGGCGCGGCAGGGTGGGGCTGGCCA
ACGCCTCCTTGACCTTCAGCCGGTCGCTCAAGTCCTCGTCCGCCTCGTAGCCCGGCTCCGGCGGC
TCCAGCCGCTGGGTGGCCTCGAGAATGTGGATCGACCGCAGCAGCAGCTCGTCGCCCAGGCCCTT
GAGCGACGGCTGGCGCTTGGGCGACGCCACGGGCGACGTGAAGCCGCTGTTCTTGGGCAGCAGCT
CGCTCTGGGGCTGGCCCTCGGCCTCGTCGTCAGCGTTGACACCGC
Found at i:2892 original size:12 final size:13
Alignment explanation
Indices: 2860--2898 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
2850 GTGGCACGGA
2860 GGAAGGAGGCACGG
1 GGAAGGAGGCAC-G
2874 AGGAAGGAGGCAC-
1 -GGAAGGAGGCACG
2887 GGAAGGAGGCAC
1 GGAAGGAGGCAC
2899 TCGGTCGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.50
15 12 0.50
ACGTcount: A:0.33, C:0.15, G:0.51, T:0.00
Consensus pattern (13 bp):
GGAAGGAGGCACG
Left flanking sequence: Indices 2360 -- 2859
GCGGCGTGGGGAACGGGCGCAGACGGCGGCGCAGGCGCGTCGTCAAGCGAGCCCCGCCCGATGAA
GCCCAGCAGGTCGGTGCGAGACCGGGCAAGCCCCTGGGACGGAGCCGGGACCGGGACGGGAGGAG
CCACTCCGGGAGGAGGAGGAGGCGGCTTGTGGTCCAACAGAGGCGCGGTGGCCAGCCGGGCCGCC
ACCAGCGGGCCCAGCGGCGCGCCGTGGGTGAGCATGGCCTCGTCGTCGCTCTCGTCCAGCGAGTC
CGAGAAGTCCTCGGGCTCGTCGGGCCGGCTGGGCGGCGGCGGAGGCACCTTGGCCTCCGGGACGG
GAGGAGGCACGCGAGGCGCCTGGGGAGCCTGGCCGGGAACAGGCGGGGCCTGGGGCGACTGCGGA
GTCTGGCCAGGCACGGGCGGCGCGCGAGGCGACTGGGGAACTTGGCCAGCAGCCGCGTGGCCAGG
CACCGGTGGCATTCCCCGGTCGGAGGAAGGCACCGGTGGCACGGA
Right flanking sequence: Indices 2899 -- 3398
TCGGTCGGAGGGAGGAGGAGGCGGAGGCATCTTGTGGTCAGCGTGGCCAGCGTGGCCAGCAGCCA
GCTGGGCTGGCGACTTTCTGGGCGCAAAGAACTCCAGCTCCAACGTGTCGGTGTCGATCCCCGGT
GTCTGAGGCAACTCGCCGTGCGACGGCGACGACGGCGGCTCCATGTACCCGGGCTCACACGGCTT
GGGGATGTCCTGCGGCGGCGGCGGGGGCGGGTGGCGCGGCAGGGTGGGGCTGGCCAACGCCTCCT
TGACCTTCAGCCGGTCGCTCAAGTCCTCGTCCGCCTCGTAGCCCGGCTCCGGCGGCTCCAGCCGC
TGGGTGGCCTCGAGAATGTGGATCGACCGCAGCAGCAGCTCGTCGCCCAGGCCCTTGAGCGACGG
CTGGCGCTTGGGCGACGCCACGGGCGACGTGAAGCCGCTGTTCTTGGGCAGCAGCTCGCTCTGGG
GCTGGCCCTCGGCCTCGTCGTCAGCGTTGACACCGCTCTCGTGGC
Found at i:3432 original size:21 final size:21
Alignment explanation
Indices: 3402--3442 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3392 TCGTGGCCGC
3402 CAGCCACAGGCACAGCGGGCG
1 CAGCCACAGGCACAGCGGGCG
*
3423 CAGCCGCAGGCACAGCGGGC
1 CAGCCACAGGCACAGCGGGC
3443 ACCGACGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.39, G:0.39, T:0.00
Consensus pattern (21 bp):
CAGCCACAGGCACAGCGGGCG
Left flanking sequence: Indices 2902 -- 3401
GTCGGAGGGAGGAGGAGGCGGAGGCATCTTGTGGTCAGCGTGGCCAGCGTGGCCAGCAGCCAGCT
GGGCTGGCGACTTTCTGGGCGCAAAGAACTCCAGCTCCAACGTGTCGGTGTCGATCCCCGGTGTC
TGAGGCAACTCGCCGTGCGACGGCGACGACGGCGGCTCCATGTACCCGGGCTCACACGGCTTGGG
GATGTCCTGCGGCGGCGGCGGGGGCGGGTGGCGCGGCAGGGTGGGGCTGGCCAACGCCTCCTTGA
CCTTCAGCCGGTCGCTCAAGTCCTCGTCCGCCTCGTAGCCCGGCTCCGGCGGCTCCAGCCGCTGG
GTGGCCTCGAGAATGTGGATCGACCGCAGCAGCAGCTCGTCGCCCAGGCCCTTGAGCGACGGCTG
GCGCTTGGGCGACGCCACGGGCGACGTGAAGCCGCTGTTCTTGGGCAGCAGCTCGCTCTGGGGCT
GGCCCTCGGCCTCGTCGTCAGCGTTGACACCGCTCTCGTGGCCGC
Right flanking sequence: Indices 3443 -- 3942
ACCGACGGAGCAGGAGGCGCCTGCGCCACCGGGGTCAGCGTAGCGGGCGCTTCCGGAGCACTGGC
GGGAACCCCGACGGATTTTTCCTTTTTGGGCGCAGGCCCGCCAAACGGGGTGGGCATCCCCATCA
TGCCAAACATGTTGCGGCCGCCGGAGATCTTGGCCATGCGCTCCACGAGCCGCCGGCGCTTGAGG
TCCTCGTCGTCCTCGTCCTCGGGCTCGGGCTCGTCCTGCTCGGCGGTGTCCTCGAGTGGCGCCCC
CACGTGGGGGATCGCGGAGGGAAGCGGCGCACCGGGCACCACGGGCGAGCCGACGCTGGCGACGT
CGTCGTGCTCAGAGGCCACGGAAGCACGCAGGGTTTGGCGGCCCAAGCTGGCGCCGGTGCCCTGG
CGCGAGATCAGCCCGTGGCTGGCGCCGGTGCCCTGGTGAGTGAACTCGGAGGCCTCCTCCAAGTA
CTCCTCCTCGTGCTCATCGGGTGCCACCTCGTCCTTGGCCGCCTC
Found at i:4343 original size:12 final size:12
Alignment explanation
Indices: 4309--4343 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4299 CGGCGGTTTT
4309 CTTGGGCTCGGG
1 CTTGGGCTCGGG
**
4321 CTTGGATTCGGG
1 CTTGGGCTCGGG
4333 CTTGGGCTCGG
1 CTTGGGCTCGG
4344 TGTGGGACGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.23, G:0.46, T:0.29
Consensus pattern (12 bp):
CTTGGGCTCGGG
Left flanking sequence: Indices 3809 -- 4308
CCCAAGCTGGCGCCGGTGCCCTGGCGCGAGATCAGCCCGTGGCTGGCGCCGGTGCCCTGGTGAGT
GAACTCGGAGGCCTCCTCCAAGTACTCCTCCTCGTGCTCATCGGGTGCCACCTCGTCCTTGGCCG
CCTCGGCCGCCATCTGGCGCTGGCGCTTCTCCTCGGCCGCCTTCTTCTTCTTCTCCTCGGCGCGT
TTCTCGGCCGCGGCCGCCCGCTCGGCCTCCTCCTGCTGCTTCTGCTGCAACATGGCAATGCGTTC
CTTGAGGCTCATCTTGGGAGCAGCCTCCTCCTCCTCCTCGTGGGTGGTGGGGGTCAGCTTGACGA
TCTCCAGGTCGTTGTGGGCGACGTCGTTGCGGCCGTGCGCGGTGTAGTCCTCGCGGGGCTTCACC
GGGGGCACGTACAGCGACTTGGCTGCGGCCACGAACTGCTTCTTGACCGCGTACGGGTCGTCCCG
CTTCTGGCCGGGCAACACGGGCGTGGGGATGTAGGCGGCGGTTTT
Right flanking sequence: Indices 4344 -- 4843
TGTGGGACGTGCCCGTGGGCTCGCTCTTGTCCGCCTTGGGCTCGCTCTTGTCCGCCTGGGGCCCA
GCAGTGGCTCCAGCCTCGGGTGCCTTGGCTGGTCCCTCCTCCTCCCTCGCTTCCTCCGTCACGTG
CTTCACGGGACGCTTGGGCACCTGGGCCTGGGGCACGATCTCAACAAAGTTCTTGGGGAACAACC
CGTCCTTGCCCCCAAGCGTGCCCGAGTACCACTCGGCGTCCTCGATGTTGGTGACGGTGATCACG
TCGCCCTCGGCAAAGTTCAAGTCGTCCTCGAACTCGGACTTGTACTCGTACACCGCCTTGACTTT
AAACGGTACCAGCGGCTCGCTCATCGCTCAATTGGGTTGTTCAATGGGGTAGTGGGCCGCGAACC
GGGTGGGTAGTTTGCTGTGATTTAAAGGCGCAAGTGACCTGTGTATGGGCGCGGGCGTGCGCCCC
TTTTGTGCCGAGAGGGGAGAGGGGACCGGTGGGCGGGCGGGCCAG
Found at i:4385 original size:21 final size:21
Alignment explanation
Indices: 4359--4405 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
4349 GACGTGCCCG
4359 TGGGCTCGCTCTTGTCCGCCT
1 TGGGCTCGCTCTTGTCCGCCT
4380 TGGGCTCGCTCTTGTCCGCCT
1 TGGGCTCGCTCTTGTCCGCCT
*
4401 GGGGC
1 TGGGC
4406 CCAGCAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.34, T:0.30
Consensus pattern (21 bp):
TGGGCTCGCTCTTGTCCGCCT
Left flanking sequence: Indices 3859 -- 4358
GGTGCCCTGGTGAGTGAACTCGGAGGCCTCCTCCAAGTACTCCTCCTCGTGCTCATCGGGTGCCA
CCTCGTCCTTGGCCGCCTCGGCCGCCATCTGGCGCTGGCGCTTCTCCTCGGCCGCCTTCTTCTTC
TTCTCCTCGGCGCGTTTCTCGGCCGCGGCCGCCCGCTCGGCCTCCTCCTGCTGCTTCTGCTGCAA
CATGGCAATGCGTTCCTTGAGGCTCATCTTGGGAGCAGCCTCCTCCTCCTCCTCGTGGGTGGTGG
GGGTCAGCTTGACGATCTCCAGGTCGTTGTGGGCGACGTCGTTGCGGCCGTGCGCGGTGTAGTCC
TCGCGGGGCTTCACCGGGGGCACGTACAGCGACTTGGCTGCGGCCACGAACTGCTTCTTGACCGC
GTACGGGTCGTCCCGCTTCTGGCCGGGCAACACGGGCGTGGGGATGTAGGCGGCGGTTTTCTTGG
GCTCGGGCTTGGATTCGGGCTTGGGCTCGGTGTGGGACGTGCCCG
Right flanking sequence: Indices 4406 -- 4905
CCAGCAGTGGCTCCAGCCTCGGGTGCCTTGGCTGGTCCCTCCTCCTCCCTCGCTTCCTCCGTCAC
GTGCTTCACGGGACGCTTGGGCACCTGGGCCTGGGGCACGATCTCAACAAAGTTCTTGGGGAACA
ACCCGTCCTTGCCCCCAAGCGTGCCCGAGTACCACTCGGCGTCCTCGATGTTGGTGACGGTGATC
ACGTCGCCCTCGGCAAAGTTCAAGTCGTCCTCGAACTCGGACTTGTACTCGTACACCGCCTTGAC
TTTAAACGGTACCAGCGGCTCGCTCATCGCTCAATTGGGTTGTTCAATGGGGTAGTGGGCCGCGA
ACCGGGTGGGTAGTTTGCTGTGATTTAAAGGCGCAAGTGACCTGTGTATGGGCGCGGGCGTGCGC
CCCTTTTGTGCCGAGAGGGGAGAGGGGACCGGTGGGCGGGCGGGCCAGAGGCGGAGTGGGGGGGC
TATGGGGTGGTGGGACGGCGGGTTAGAGAGCTGTGTCGCGGGCAA
Found at i:6127 original size:12 final size:12
Alignment explanation
Indices: 6110--6144 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
6100 CGCCAATGGG
6110 TCCTCGAACGGT
1 TCCTCGAACGGT
6122 TCCTCGAACGGT
1 TCCTCGAACGGT
*
6134 TCCTCCAACGG
1 TCCTCGAACGG
6145 GTCCACGCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.17, C:0.37, G:0.23, T:0.23
Consensus pattern (12 bp):
TCCTCGAACGGT
Left flanking sequence: Indices 5610 -- 6109
ACCGGTGCCAGCTGCCCCAGCAGCTAGACACCGTGGTGCTGGCGTCTTTGGCCAAGCTCCCCTTC
CTCGTGCGGGGCAACGGACCCATAGCGGGCCTGGCCGTGGTGGAGTTGCTCAACTATTGCATCTG
GGCACTCGAGTACCTCACCCGCGAGCGGCTCAAGTTTGCCCGTGTGCGCTATTGCGACTACGAGG
CGTTCTACGTGTTGTTCCAGTTAGTGGCCCGCTTGGCCAGCAAGCCGGTGCTGAGCACGTCTTCA
GCGCACGACAGCCTCATGGAGATGATCAAGGCGCAGTTGGCGAAGCAGGCACCATTTTTCAGCCG
GGTCCAGCAGTTCTTTGGCGTGAAAAACGGGTCTGCTCCGGCCACGCCCGAGGCCACCGACGAGG
ACCCGTTGGTGCTGCGGTTGCGCAACTTGAACACGGGCAAGGCAGCGAGCAAGCTCACGACCAAG
GTTATCCCGCTATCGGGGAGTCTGTCCCCAAGTCTCGCCAATGGG
Right flanking sequence: Indices 6145 -- 6644
GTCCACGCGGGCCTCCACGTTCACCGGGGAAACCCGCGAGAACCTCGATGTCGCCGCCCTCGCCA
CCCGTCTCCGCAAGGACAAGGTGCTTGTGATTGACTTCCAGCCACGAGTCGCCTACGACGCCCGC
GGCTCCATCAACTACGGTGACGTCATCCACATCGACCCCGAGTGGGTGGCCATGGAGGCCTCGAA
GCGCGAGCCGTCGTGGGCCGGTCTCGACGAGCGGCTCCGCATCCACATGAGCGCGTCCCACTACA
AGCGGTGGCTCCGGTTGGCCGACTACGACCTCGTGGCGGTGTACGGGTCCTCCTACAAACGGTCG
TTCACCGCGGTGAACGCCAAGGGCGAGCCGGAATCGCCTCCGTTCTGGCCGTTGTTCAACTTGTT
GGTGCCGCTTGCCGACAGCCCGCCGTCGCCACGGCTTGCCAAGTACCCGGTGTACCTCGACGGGG
GCTTGGCTGCGTGGGAGGGCCATTTCGGGGCCCAGGGGGTCTCAC
Found at i:8315 original size:15 final size:15
Alignment explanation
Indices: 8295--8355 Score: 86
Period size: 15 Copynumber: 4.1 Consensus size: 15
8285 GAGCTACCGT
8295 GAGCGTACTGTGAGA
1 GAGCGTACTGTGAGA
8310 GAGCGTACTGTGAGA
1 GAGCGTACTGTGAGA
* * *
8325 GAGCGTATTTTGATA
1 GAGCGTACTGTGAGA
*
8340 GAGCGTATTGTGAGA
1 GAGCGTACTGTGAGA
8355 G
1 G
8356 GTATCTGCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 41 1.00
ACGTcount: A:0.26, C:0.10, G:0.38, T:0.26
Consensus pattern (15 bp):
GAGCGTACTGTGAGA
Left flanking sequence: Indices 7795 -- 8294
CATTGTCCACTTCAAGCGGTTCAAGTTGAACGAGCGCGGCTACTTCAACAAGCTCGACACCTTTG
TCACCTACCCCGTCAACCAGGAGCTCGACCTCACTCCCTTCTGGACGGGGCGCACGGGAACAGCC
ATTAGCGACTCCCAGCACCTGATGTCGGCCCAGGAGGAAGAGGAGTACCTCAAGGACATCCCCAC
GCGCCGCCAGCAGCCGCCGTTCCGCTACAAGCTCTATGGGGTCGCCAACCACTTTGGGCTGATGA
CCACGGGGCACTACACCAGTTACGTGTACAAGCTGAGCGACCGCAAGAAGACGCGGCGCTGGTGC
TACTTTGACGATGAGAAGATCACCTACAACTGTCTGGAACAACAGGTGCTTAATAAGAACGCTTA
TTGTTTGTTTTTCGAAAGGGTGTGAATAGATATGCATAGTTAAGAGATTAGATGTATGAAGGAGT
TTTACACTGCTTAAGTTGGAATCGAAACGAGACACGAGCTACCGT
Right flanking sequence: Indices 8356 -- 8855
GTATCTGCAATAACTCGTAGTCTCACACCACACGGCTGCACAAATGGGGTGTACACCAAACCAAG
TAAACCACCAAGGCTCGCTGACTTCAACGTTAGCTGTAGTGCTTTGCACCTTTCGTCCTACGCCG
GGCTCATTGCGATTCGTAAGTTTGGATAACTTGTGTCATTTCCCGACGTATCATCGGTTATCTAT
TCGATCTGTGAACACATCTGATACTATCAAACACCTGGTGGCTAAATAGACCCTTAAAGAACGAA
TTGGAGGAAGTGTAGCATTATTAACCGAGTCCACCGCTGGCGTTGTCGCAATACTACGACCCGTA
ATTAATTATGCTCTCAGACCACGATAGTGAACTACACGCACACGGGTCCTAACCCGAAAATTGCT
ATCCTCATATTTTCGTGACAGGCAATGTTCTAGATAATCCAAGCCTGACTGGCCACATTTACAGA
ACCCTCTGACTTCTCGCGATTCTATTTCGTATACTGTATTAATGC
Found at i:9620 original size:11 final size:11
Alignment explanation
Indices: 9604--9640 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
9594 GGTGGTGGGT
9604 GTGGAATGTGA
1 GTGGAATGTGA
9615 GTGGAATGTGA
1 GTGGAATGTGA
* *
9626 GTCGAAAGTGA
1 GTGGAATGTGA
9637 GTGG
1 GTGG
9641 TGGCGGTGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.27, C:0.03, G:0.46, T:0.24
Consensus pattern (11 bp):
GTGGAATGTGA
Left flanking sequence: Indices 9104 -- 9603
TCGATGTAGTCGTGCGACGACCCCAAAGCCACGTCAAAGAACACCCGGTGCTGCTTGTTCAGGGT
GCCGTCGGTGTAGATGGGCGTCAAGCAGATGCGGTGCTCACCGGAGTCGTAGGTGGTGAAGGTGA
ACTCCCCCAGGGGCAGCGACTTCTGGTCGAGCACCATGTGGTTGTTGTCGAACGTCTCCTCCACC
AGCACCTGCACCTTCAAGTTCTGGTTGACGTAGTACTCGTTGGAGTGGTCGTTCTTCTCGAGGGC
CTCAATGCGGCCCACAAGGAGCGTGTCCTGGGGCAAGTCCTCGTAGAAGCATCTCAGCTCCCCCG
TCTTCAAGTAAAAGTGGAGGGCCAGCGCCAACTGGGCGAAAAGCAATGCCAAAATCACCTTCATC
GTTGTGGGGGTTTGGGTGATTTGGACGCGTGTTTTTTTTCAGGTCGCGGCACGGTCACGGGGGTG
GGGTCACGTGTGAGTTGGTGGGGAGTGGTTAGTGGGGTGGTGGGT
Right flanking sequence: Indices 9641 -- 10140
TGGCGGTGAGCAATTGCATATGGTGTGGATGCCATACGAGTCTATTGTGTTGTTTCGGTAATAAT
CTCTGTCGGAATGTGTCGGTGTCGTCCGGCGGTGGTTTGGCCAGAATAAGCGAGGACCGCGTGAA
GTGGGTTTACAGCAACTAAGAGGTCTTCGGCAAATCATTGCTATCCCCATATCCCTGATTGTACC
TACTATTTACTTGCTGGCGTCCTCTCCTCCTATTTTTCACCCCACTACCCTTCGTCAGACACTGC
AACGTCCCATCACCGACCGGTTCCTCCACCACGGCCCAAACCCAGACTACACTTCAAACTAAATC
ACACACCCCACCAAACCACGCTTTCCACCAACCCCGCTTCCCACCAAACCACACCTCTCACCCCT
CCACCCGTCCCCACACCACACCCAGCCATATCGCTCCTGCAGACGACCGCACGATCATTGTGCGA
CTAGCCTGAAAATTTTCACTAAGAGCCAAGAGCCCAAGAACAAGA
Found at i:9995 original size:17 final size:17
Alignment explanation
Indices: 9972--10017 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 17
9962 AATCACACAC
9972 CCCACCAAACCACGCTT
1 CCCACCAAACCACGCTT
* *
9989 TCCACC-AACCCCGCTT
1 CCCACCAAACCACGCTT
10005 CCCACCAAACCAC
1 CCCACCAAACCAC
10018 ACCTCTCACC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.28, C:0.57, G:0.04, T:0.11
Consensus pattern (17 bp):
CCCACCAAACCACGCTT
Left flanking sequence: Indices 9472 -- 9971
CAATGCCAAAATCACCTTCATCGTTGTGGGGGTTTGGGTGATTTGGACGCGTGTTTTTTTTCAGG
TCGCGGCACGGTCACGGGGGTGGGGTCACGTGTGAGTTGGTGGGGAGTGGTTAGTGGGGTGGTGG
GTGTGGAATGTGAGTGGAATGTGAGTCGAAAGTGAGTGGTGGCGGTGAGCAATTGCATATGGTGT
GGATGCCATACGAGTCTATTGTGTTGTTTCGGTAATAATCTCTGTCGGAATGTGTCGGTGTCGTC
CGGCGGTGGTTTGGCCAGAATAAGCGAGGACCGCGTGAAGTGGGTTTACAGCAACTAAGAGGTCT
TCGGCAAATCATTGCTATCCCCATATCCCTGATTGTACCTACTATTTACTTGCTGGCGTCCTCTC
CTCCTATTTTTCACCCCACTACCCTTCGTCAGACACTGCAACGTCCCATCACCGACCGGTTCCTC
CACCACGGCCCAAACCCAGACTACACTTCAAACTAAATCACACAC
Right flanking sequence: Indices 10018 -- 10517
ACCTCTCACCCCTCCACCCGTCCCCACACCACACCCAGCCATATCGCTCCTGCAGACGACCGCAC
GATCATTGTGCGACTAGCCTGAAAATTTTCACTAAGAGCCAAGAGCCCAAGAACAAGACCGTCCA
GCATGAGTTCGAGCAACTGTCGATTCTACGAAAACAAGTACCCCGAGGTGGACGAGGTGGTCATG
GTCAACGTGCAGGAGATCGCCGAGATGGGTGCCTACGTCAAGTTGTTGGAGTACGACAACATCGA
GGGGATGGTGTTGTTGTCGGAGTTGCTGAGAAGACGTATCCGGTCGATCCAGAAGCTCATCCGTG
TGGGCAAGAACGAGGTGGCGGTGGTGTTGCGTGTCGACAAGGAAAAGGGGTACATTGACTTGTCC
AAGCGCCGGGTGTCCCAGGAGGACATCATCAAGTGTGACGAGCGCTACAACAAGCTGAAGGCGGT
GCACCTGATCTTGCGCCACTGCGCCGAGAAGTTTGGGTTGCCGCT
Found at i:13516 original size:13 final size:13
Alignment explanation
Indices: 13493--13537 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
13483 GAATTAGAGA
13493 AGAGAAT-AAATG
1 AGAGAATGAAATG
13505 AGAGAATGAAATG
1 AGAGAATGAAATG
13518 AGAGAATGAAATG
1 AGAGAATGAAATG
13531 AGAGAAT
1 AGAGAAT
13538 TAAGTACAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 7 0.22
13 25 0.78
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.16
Consensus pattern (13 bp):
AGAGAATGAAATG
Left flanking sequence: Indices 12993 -- 13492
TCGAGCCAGGTGATGAGCCGCAGCATGTTCTGGAAAAACAGGTCGTCCGTGTACTCGAGGCAGAA
CAGCACCGCTGCCCCGTCCTCGAGCTGGGTGTCCAAGTTGAGGTCGGTGACCTCGAGCACGGAAA
CCTGTTCCTTGGCCTGGAGCTCGGACACAAACATGATCAGGTGGAAGTACTTGAGCCCGCCAAAC
TCAATCACCACCCGCGCGCGTCGCTTGCCGTTGGTCGGGTACCCCATCGCGTAGGTTGTGTTTGA
CGTTCTGCGATGTGCGGGTGCGTTTTGGTTGCAAACAAAGGGTGGTTTGACAGGAGGAAGGTGGG
GGGCTTGGGGGTTTGGTACTGGGGAAGCGTTGAAGTGGTGGTCTTACTGAACGAGGTTATTGGTT
ACTCGAGTGGTTCTACGGTGGGGGATGGTGGTGCTCATCGCACTGGTGTTGTGTGTAAACAGTAA
CACAATGTGTAGGTAAGGCAATTATTTGGATAAGAGAATTAGAGA
Right flanking sequence: Indices 13538 -- 14037
TAAGTACAATGGTTGAAAACGGGCAGACGTAAGACGGGTGTGATTATTCAGGCTGTTGTCTCACC
TACATATCAGAGGTTCCATGCGTAGACTGATATCGCTAGACTCTATCGCATAGACTCTATCGCAT
AGAAATTGTATGAGTTGTCTCGGTAGTAAGCGAAATTTCGACCCGTGCAAACCCAAATACGCCGT
CACCGTTCCGTACACTAATGCCTACCCCCAATTTTTCATTTTTTTATTGCGGTTGTCTATAGAAT
CTCTAGTCCCTGTCGTTTAGTCGTTACCATTAATATCTTCCCGGGCTGAACAAGCACGCGATCAC
CTCTCTGGGCGAAATCGAGTACGCGCTAAAGTCAATATTATCGGGGTCGATCTCCTTCGCTTCCT
CCATCATCTTGCGGTTGCGAGCAATGAGGTACGCCCGCTGTAACCACAAGAACTACGCAGACACA
ATGAAACATACCCCGCAAAAGATGGCTACGTTCTGGTACTGCGTG
Found at i:13644 original size:14 final size:14
Alignment explanation
Indices: 13625--13670 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
13615 GTTCCATGCG
13625 TAGACTGATATCGC-
1 TAGACT-ATATCGCA
*
13639 TAGACTCTATCGCA
1 TAGACTATATCGCA
*
13653 TAGACTCTATCGCA
1 TAGACTATATCGCA
13667 TAGA
1 TAGA
13671 AATTGTATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 6 0.20
14 24 0.80
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (14 bp):
TAGACTATATCGCA
Left flanking sequence: Indices 13125 -- 13624
TGTTCCTTGGCCTGGAGCTCGGACACAAACATGATCAGGTGGAAGTACTTGAGCCCGCCAAACTC
AATCACCACCCGCGCGCGTCGCTTGCCGTTGGTCGGGTACCCCATCGCGTAGGTTGTGTTTGACG
TTCTGCGATGTGCGGGTGCGTTTTGGTTGCAAACAAAGGGTGGTTTGACAGGAGGAAGGTGGGGG
GCTTGGGGGTTTGGTACTGGGGAAGCGTTGAAGTGGTGGTCTTACTGAACGAGGTTATTGGTTAC
TCGAGTGGTTCTACGGTGGGGGATGGTGGTGCTCATCGCACTGGTGTTGTGTGTAAACAGTAACA
CAATGTGTAGGTAAGGCAATTATTTGGATAAGAGAATTAGAGAAGAGAATAAATGAGAGAATGAA
ATGAGAGAATGAAATGAGAGAATTAAGTACAATGGTTGAAAACGGGCAGACGTAAGACGGGTGTG
ATTATTCAGGCTGTTGTCTCACCTACATATCAGAGGTTCCATGCG
Right flanking sequence: Indices 13671 -- 14170
AATTGTATGAGTTGTCTCGGTAGTAAGCGAAATTTCGACCCGTGCAAACCCAAATACGCCGTCAC
CGTTCCGTACACTAATGCCTACCCCCAATTTTTCATTTTTTTATTGCGGTTGTCTATAGAATCTC
TAGTCCCTGTCGTTTAGTCGTTACCATTAATATCTTCCCGGGCTGAACAAGCACGCGATCACCTC
TCTGGGCGAAATCGAGTACGCGCTAAAGTCAATATTATCGGGGTCGATCTCCTTCGCTTCCTCCA
TCATCTTGCGGTTGCGAGCAATGAGGTACGCCCGCTGTAACCACAAGAACTACGCAGACACAATG
AAACATACCCCGCAAAAGATGGCTACGTTCTGGTACTGCGTGGGGTCCACGTACGCACCCTCACC
ACGACGGAGCTTCAACCCAATCGCGGGCCCGAACAACGCCGCCACACCCTGGATCGTCCACAAGT
AGGCAAACGCCGTCGACATGCGCTTGATCCCAAACACCGCCGCAC
Found at i:13651 original size:13 final size:14
Alignment explanation
Indices: 13633--13670 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
13623 CGTAGACTGA
13633 TATCGC-TAGACTC
1 TATCGCATAGACTC
13646 TATCGCATAGACTC
1 TATCGCATAGACTC
13660 TATCGCATAGA
1 TATCGCATAGA
13671 AATTGTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (14 bp):
TATCGCATAGACTC
Left flanking sequence: Indices 13133 -- 13632
GGCCTGGAGCTCGGACACAAACATGATCAGGTGGAAGTACTTGAGCCCGCCAAACTCAATCACCA
CCCGCGCGCGTCGCTTGCCGTTGGTCGGGTACCCCATCGCGTAGGTTGTGTTTGACGTTCTGCGA
TGTGCGGGTGCGTTTTGGTTGCAAACAAAGGGTGGTTTGACAGGAGGAAGGTGGGGGGCTTGGGG
GTTTGGTACTGGGGAAGCGTTGAAGTGGTGGTCTTACTGAACGAGGTTATTGGTTACTCGAGTGG
TTCTACGGTGGGGGATGGTGGTGCTCATCGCACTGGTGTTGTGTGTAAACAGTAACACAATGTGT
AGGTAAGGCAATTATTTGGATAAGAGAATTAGAGAAGAGAATAAATGAGAGAATGAAATGAGAGA
ATGAAATGAGAGAATTAAGTACAATGGTTGAAAACGGGCAGACGTAAGACGGGTGTGATTATTCA
GGCTGTTGTCTCACCTACATATCAGAGGTTCCATGCGTAGACTGA
Right flanking sequence: Indices 13671 -- 14170
AATTGTATGAGTTGTCTCGGTAGTAAGCGAAATTTCGACCCGTGCAAACCCAAATACGCCGTCAC
CGTTCCGTACACTAATGCCTACCCCCAATTTTTCATTTTTTTATTGCGGTTGTCTATAGAATCTC
TAGTCCCTGTCGTTTAGTCGTTACCATTAATATCTTCCCGGGCTGAACAAGCACGCGATCACCTC
TCTGGGCGAAATCGAGTACGCGCTAAAGTCAATATTATCGGGGTCGATCTCCTTCGCTTCCTCCA
TCATCTTGCGGTTGCGAGCAATGAGGTACGCCCGCTGTAACCACAAGAACTACGCAGACACAATG
AAACATACCCCGCAAAAGATGGCTACGTTCTGGTACTGCGTGGGGTCCACGTACGCACCCTCACC
ACGACGGAGCTTCAACCCAATCGCGGGCCCGAACAACGCCGCCACACCCTGGATCGTCCACAAGT
AGGCAAACGCCGTCGACATGCGCTTGATCCCAAACACCGCCGCAC
Found at i:19835 original size:21 final size:21
Alignment explanation
Indices: 19809--19870 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
19799 ACCCCCGTTG
* *
19809 AGGAGGGCGAGGAGGACAAGA
1 AGGAGGCCAAGGAGGACAAGA
* *
19830 AGGAGGCCAAGGCGGACGAGA
1 AGGAGGCCAAGGAGGACAAGA
* * *
19851 AGGACGACAAGAAGGACAAG
1 AGGAGGCCAAGGAGGACAAG
19871 GAGCCCAAGA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.40, C:0.15, G:0.45, T:0.00
Consensus pattern (21 bp):
AGGAGGCCAAGGAGGACAAGA
Left flanking sequence: Indices 19309 -- 19808
CCCCTCCTCCTTTTTCACTTTTTTCACCTACCCCAAAATAATTTTTTTCGACAAATTTTTCTACC
TATCAAAGATGTCTGAGTCGCCGGAGGACGTGGCTGGCGCCACCCAGGTGACGCTCAAGGTGACA
CTCCCCAAGTGTGTCACCGCCGCCGACGTGCTTGAGATCCCCTTCACCTCCGAGCAGTCGATTGG
TGATTTGCACCAGACGCTCGCGTTGTTACCGATTGCCCGCAACTTGACGCTGTACTACGTGGAGA
TTGAGGGCCAGCGGATCGACGACCCCGAGACCACCATTGGCATGGTGCTCGACGCTGTGCCCGAG
ACCTCCGAATTGCAGGTGTTGGTCAAGGAGAAGCCCTACACCATGGCCGGGGTCTACGAGCAGAT
TTGCAAGTTCCGTGAGCTGATCGGGTTGCACTACTTGGACCGGGTGGCCGGAGACCTTGCTGCCC
AGTCCGGTGTCAACAAGATCAACACCCTTGGCTTGACCCCCGTTG
Right flanking sequence: Indices 19871 -- 20370
GAGCCCAAGAAGGAGCCCAAGAAGTTGTCCGACGAGGAGTCTGCCGGCGTGGCGGCCCTCGAGCT
GGCGCTCTCCACCGTGCCCTCGCTCAAGGACTCCGCGCAGTTTGCCAACTTCATGGATGCGATCA
AGGTGCCCATCCGTGGGTTGACGGTGTCGCAGTGGTCGCCCGTGCCCGCGCACCGCCGTGCTGCC
GGTGACTTGCTCTACTTGACCATCACCACCCTTGAGTTGGAGATCTTCCACGTGACCGCGCACGT
GCTGGGTTTCTTTGTTAACCAGCTGACGTCATCGTTTTTCAAGCCCGAGCCGCAAGCGGGCGGCG
CTCGCCAGTTCTTGTTGTACAACTTGTTGCTGCAGTTGTCCCCCGGGTTCGACGCTGCTGTCGAG
CAGTTTGAGGTGCTGGTGACCCAGCTGGCCGCCGATCTCCCCGAGCTGTTCCTTTTGGCCACGCT
GGCCTTCCTCGCGCTGCCGTGGATCGTCGACCCCAAGGCGACCCC
Found at i:19883 original size:12 final size:12
Alignment explanation
Indices: 19868--19894 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
19858 CAAGAAGGAC
19868 AAGGAGCCCAAG
1 AAGGAGCCCAAG
19880 AAGGAGCCCAAG
1 AAGGAGCCCAAG
19892 AAG
1 AAG
19895 TTGTCCGACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.33, T:0.00
Consensus pattern (12 bp):
AAGGAGCCCAAG
Left flanking sequence: Indices 19368 -- 19867
TCTACCTATCAAAGATGTCTGAGTCGCCGGAGGACGTGGCTGGCGCCACCCAGGTGACGCTCAAG
GTGACACTCCCCAAGTGTGTCACCGCCGCCGACGTGCTTGAGATCCCCTTCACCTCCGAGCAGTC
GATTGGTGATTTGCACCAGACGCTCGCGTTGTTACCGATTGCCCGCAACTTGACGCTGTACTACG
TGGAGATTGAGGGCCAGCGGATCGACGACCCCGAGACCACCATTGGCATGGTGCTCGACGCTGTG
CCCGAGACCTCCGAATTGCAGGTGTTGGTCAAGGAGAAGCCCTACACCATGGCCGGGGTCTACGA
GCAGATTTGCAAGTTCCGTGAGCTGATCGGGTTGCACTACTTGGACCGGGTGGCCGGAGACCTTG
CTGCCCAGTCCGGTGTCAACAAGATCAACACCCTTGGCTTGACCCCCGTTGAGGAGGGCGAGGAG
GACAAGAAGGAGGCCAAGGCGGACGAGAAGGACGACAAGAAGGAC
Right flanking sequence: Indices 19895 -- 20394
TTGTCCGACGAGGAGTCTGCCGGCGTGGCGGCCCTCGAGCTGGCGCTCTCCACCGTGCCCTCGCT
CAAGGACTCCGCGCAGTTTGCCAACTTCATGGATGCGATCAAGGTGCCCATCCGTGGGTTGACGG
TGTCGCAGTGGTCGCCCGTGCCCGCGCACCGCCGTGCTGCCGGTGACTTGCTCTACTTGACCATC
ACCACCCTTGAGTTGGAGATCTTCCACGTGACCGCGCACGTGCTGGGTTTCTTTGTTAACCAGCT
GACGTCATCGTTTTTCAAGCCCGAGCCGCAAGCGGGCGGCGCTCGCCAGTTCTTGTTGTACAACT
TGTTGCTGCAGTTGTCCCCCGGGTTCGACGCTGCTGTCGAGCAGTTTGAGGTGCTGGTGACCCAG
CTGGCCGCCGATCTCCCCGAGCTGTTCCTTTTGGCCACGCTGGCCTTCCTCGCGCTGCCGTGGAT
CGTCGACCCCAAGGCGACCCCCGTGGCGCCCGATGTGTCTCGCTC
Found at i:27101 original size:8 final size:8
Alignment explanation
Indices: 27088--27146 Score: 75
Period size: 8 Copynumber: 7.2 Consensus size: 8
27078 TGAATGGGAA
27088 GGTGGTGT
1 GGTGGTGT
*
27096 GGTGGTAT
1 GGTGGTGT
27104 GGTGGTGT
1 GGTGGTGT
27112 GGTGGTGT
1 GGTGGTGT
27120 GGTGGTG-
1 GGTGGTGT
*
27127 GAGTGATGT
1 G-GTGGTGT
27136 GGGTGGTGT
1 -GGTGGTGT
27145 GG
1 GG
27147 GTTTTGGCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
7 1 0.02
8 36 0.82
9 6 0.14
10 1 0.02
ACGTcount: A:0.05, C:0.00, G:0.61, T:0.34
Consensus pattern (8 bp):
GGTGGTGT
Left flanking sequence: Indices 26588 -- 27087
GGTGGTGGCGTTGATGTGGACCACCCCTGGGTCGCGCTGGTTGCCCGGAGCCGGACGGGTCAAGA
GAGCGAGGGGAAGGTCGGCTGCGTTGTCGATGGGGAAATCGAACATGAGGGGCAGCGGGTCGATC
AGGGTGTAGGGCCACGCCTGGATGGCGGTGCGGGTGATGACAATGCCGTAGTTGGTGTGGCAGTC
GGTGTAGCCGTTGAACACCGCTGCACCTTGCGCCGGCATCGCTGGGAGCCGCAGCACGCAGTACA
GCGGTGTTTTGGTGAGTTCGGTGGCACCCACGCGGCGTTTGGGGCCGGAATGGGCCAGCAGGTCC
ATCAGAGTGTCGCTCATGGCGCTGGCGTCCCGTTTCCGCGCACGGAAGACGGTGGGGGACATGGT
GATCTTGGGACGTTTTTTGCTGATGGGACGCGCAAGAGTAGGGTGGGCTCGTAACGGTGGGGGGG
ATATAGGCGGTGTGGGTAGATGGGGTAGGTGGGTATGAATGGGAA
Right flanking sequence: Indices 27147 -- 27646
GTTTTGGCTACTTTGGTGTAGTGGTGGTTACTGGGTGTTGTGGTGATCGCAGTGATACATGTAAA
CAGAGTGAAAAAGTGGGATATGGAGAGATTAGGAGTGGTTTGAATATGAATCAAGGGATAGGTGG
GTGGTGGGTGATGTGGTATTGGGTGATGTGGTATTGGGTGATGTCGTAAGTGTGAATTGCTACGT
TTGATGGTGGGTTACTGGTGTTGTGGTGGATCGCATTGCTTGAAATGTAAACAGAATGAAAAAGG
AAATAGAATGAAAAGAAAATTGTATGGGAGAATTTTGGGATGTTGAAGTGTGGATCAATGGGTAG
GTAAAATTTGGGGGTTGGGATTGTTTAGAGTGTGTTTCTGTCAGGCTACATTATTGGATGTGTTA
CTTGGTTGCGGTGGATTGTTAGTATAGAGTGAAAAATAGGCTGCGAAAATAGCGAACTGGTAGAT
AATTGAGTGGTTCAAATGGGGTGGAATGGTGGTGATCTACTGGGA
Found at i:27301 original size:15 final size:15
Alignment explanation
Indices: 27281--27320 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
27271 AGGTGGGTGG
27281 TGGGTGATGTGGTAT
1 TGGGTGATGTGGTAT
27296 TGGGTGATGTGGTAT
1 TGGGTGATGTGGTAT
27311 TGGGTGATGT
1 TGGGTGATGT
27321 CGTAAGTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.47, T:0.40
Consensus pattern (15 bp):
TGGGTGATGTGGTAT
Left flanking sequence: Indices 26781 -- 27280
TCGGTGTAGCCGTTGAACACCGCTGCACCTTGCGCCGGCATCGCTGGGAGCCGCAGCACGCAGTA
CAGCGGTGTTTTGGTGAGTTCGGTGGCACCCACGCGGCGTTTGGGGCCGGAATGGGCCAGCAGGT
CCATCAGAGTGTCGCTCATGGCGCTGGCGTCCCGTTTCCGCGCACGGAAGACGGTGGGGGACATG
GTGATCTTGGGACGTTTTTTGCTGATGGGACGCGCAAGAGTAGGGTGGGCTCGTAACGGTGGGGG
GGATATAGGCGGTGTGGGTAGATGGGGTAGGTGGGTATGAATGGGAAGGTGGTGTGGTGGTATGG
TGGTGTGGTGGTGTGGTGGTGGAGTGATGTGGGTGGTGTGGGTTTTGGCTACTTTGGTGTAGTGG
TGGTTACTGGGTGTTGTGGTGATCGCAGTGATACATGTAAACAGAGTGAAAAAGTGGGATATGGA
GAGATTAGGAGTGGTTTGAATATGAATCAAGGGATAGGTGGGTGG
Right flanking sequence: Indices 27321 -- 27820
CGTAAGTGTGAATTGCTACGTTTGATGGTGGGTTACTGGTGTTGTGGTGGATCGCATTGCTTGAA
ATGTAAACAGAATGAAAAAGGAAATAGAATGAAAAGAAAATTGTATGGGAGAATTTTGGGATGTT
GAAGTGTGGATCAATGGGTAGGTAAAATTTGGGGGTTGGGATTGTTTAGAGTGTGTTTCTGTCAG
GCTACATTATTGGATGTGTTACTTGGTTGCGGTGGATTGTTAGTATAGAGTGAAAAATAGGCTGC
GAAAATAGCGAACTGGTAGATAATTGAGTGGTTCAAATGGGGTGGAATGGTGGTGATCTACTGGG
AACGCTACTCAATGACTATGTGTGCCTGTATGGGTTTAGAGATGAATCGTAAACACCCTATACGT
CACATACATAGCTAGTATGGACTGATTCATGTCAAAATGCCCATCATCAGTAGAGTAAAGTACAG
TCGCCGCAAACGAACCAGTTCTCTCCACAACAGCATTAGCGATAA
Found at i:27420 original size:16 final size:17
Alignment explanation
Indices: 27394--27426 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
27384 AAATGTAAAC
*
27394 AGAATGAAAAAGGAAAT
1 AGAATGAAAAAGAAAAT
27411 AGAATG-AAAAGAAAAT
1 AGAATGAAAAAGAAAAT
27427 TGTATGGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (17 bp):
AGAATGAAAAAGAAAAT
Left flanking sequence: Indices 26894 -- 27393
GGAATGGGCCAGCAGGTCCATCAGAGTGTCGCTCATGGCGCTGGCGTCCCGTTTCCGCGCACGGA
AGACGGTGGGGGACATGGTGATCTTGGGACGTTTTTTGCTGATGGGACGCGCAAGAGTAGGGTGG
GCTCGTAACGGTGGGGGGGATATAGGCGGTGTGGGTAGATGGGGTAGGTGGGTATGAATGGGAAG
GTGGTGTGGTGGTATGGTGGTGTGGTGGTGTGGTGGTGGAGTGATGTGGGTGGTGTGGGTTTTGG
CTACTTTGGTGTAGTGGTGGTTACTGGGTGTTGTGGTGATCGCAGTGATACATGTAAACAGAGTG
AAAAAGTGGGATATGGAGAGATTAGGAGTGGTTTGAATATGAATCAAGGGATAGGTGGGTGGTGG
GTGATGTGGTATTGGGTGATGTGGTATTGGGTGATGTCGTAAGTGTGAATTGCTACGTTTGATGG
TGGGTTACTGGTGTTGTGGTGGATCGCATTGCTTGAAATGTAAAC
Right flanking sequence: Indices 27427 -- 27926
TGTATGGGAGAATTTTGGGATGTTGAAGTGTGGATCAATGGGTAGGTAAAATTTGGGGGTTGGGA
TTGTTTAGAGTGTGTTTCTGTCAGGCTACATTATTGGATGTGTTACTTGGTTGCGGTGGATTGTT
AGTATAGAGTGAAAAATAGGCTGCGAAAATAGCGAACTGGTAGATAATTGAGTGGTTCAAATGGG
GTGGAATGGTGGTGATCTACTGGGAACGCTACTCAATGACTATGTGTGCCTGTATGGGTTTAGAG
ATGAATCGTAAACACCCTATACGTCACATACATAGCTAGTATGGACTGATTCATGTCAAAATGCC
CATCATCAGTAGAGTAAAGTACAGTCGCCGCAAACGAACCAGTTCTCTCCACAACAGCATTAGCG
ATAATTCCTCTACCATGCTCTTTCTTCCTTGCCAATTACCACCACCAACTGACTTCTCGAAACCT
TCCAATCTATTAATGCTACAAATATGAAATGAACTACTTCTTCTG
Found at i:27982 original size:18 final size:18
Alignment explanation
Indices: 27961--27996 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
27951 GCTGTAGTCG
*
27961 ATCTCGTCCTCGGACCCC
1 ATCTCCTCCTCGGACCCC
*
27979 ATCTCCTCGTCGGACCCC
1 ATCTCCTCCTCGGACCCC
27997 TCGTCCGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.50, G:0.17, T:0.22
Consensus pattern (18 bp):
ATCTCCTCCTCGGACCCC
Left flanking sequence: Indices 27461 -- 27960
TCAATGGGTAGGTAAAATTTGGGGGTTGGGATTGTTTAGAGTGTGTTTCTGTCAGGCTACATTAT
TGGATGTGTTACTTGGTTGCGGTGGATTGTTAGTATAGAGTGAAAAATAGGCTGCGAAAATAGCG
AACTGGTAGATAATTGAGTGGTTCAAATGGGGTGGAATGGTGGTGATCTACTGGGAACGCTACTC
AATGACTATGTGTGCCTGTATGGGTTTAGAGATGAATCGTAAACACCCTATACGTCACATACATA
GCTAGTATGGACTGATTCATGTCAAAATGCCCATCATCAGTAGAGTAAAGTACAGTCGCCGCAAA
CGAACCAGTTCTCTCCACAACAGCATTAGCGATAATTCCTCTACCATGCTCTTTCTTCCTTGCCA
ATTACCACCACCAACTGACTTCTCGAAACCTTCCAATCTATTAATGCTACAAATATGAAATGAAC
TACTTCTTCTGTCTCTTGGCCGCAGGCTCGTCGTCGCTGTAGTCG
Right flanking sequence: Indices 27997 -- 28496
TCGTCCGACAGCACCTGGTCGTACTTGCTCTTGAGCCCCTTCATCTTGCGCGTCTGCAACTTGCC
GAGGTCCTGCTTGCCCATGTGGATCTGCGCCACCTTGTCGCCCATGGTGTCGGTGCTGACGTTCT
TCTTGACCTTGGCCTGCAACTGCTTGGGCTTGCGCATCGCCTCCTTCTCCACCTCGGGCGCGGGG
GTCACCCGGCGCCCGATCTTGAAGTCGAGCCGCGGCCCGATCTCCGCCAACTCCACCCGGGGCAC
TTTCTGGCCCAGCTTGTAGGTTTTGAGCTTGTACACTCTGAAGTTGACCGGAGGCAACTTCAGCA
CGTCGGCGTTGGGGTCCTCGATGTCCCCGGTGGAGATCGAGATGATGTACTGCAACCCAGCCACG
TCCTGGAGATCGGTGTCCTCGCCACGGTAGAAGTCAAGGAACAACAGCTTGATCTGCTGGTACAC
GGGGTGGGTGTCGAACGCGGGGCCGTTGAACGTGAACATCGGCTT
Found at i:29108 original size:9 final size:9
Alignment explanation
Indices: 29095--29132 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
29085 TTATTTTGCT
29095 TACTTGTAC
1 TACTTGTAC
*
29104 GACTTGTAC
1 TACTTGTAC
29113 TACTTGTAC
1 TACTTGTAC
29122 TACTTGTAC
1 TACTTGTAC
29131 TA
1 TA
29133 TATGACAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (9 bp):
TACTTGTAC
Left flanking sequence: Indices 28595 -- 29094
ACCGGCCAAAGGTAAGGGTGTTGGGACGCTTCTTGTTGTGGGCAGAGAACACCATCAACGACGCG
TCGTTCTTCTCGGAGAAGAACTCGAGCTGCAGGGCGTCCTCGAACGGGCGCACCTCGTTCTTCTT
GCTGAACTTCTTCGCAAGCGGCTTCTTGAGGGCCATGAGGTCGCACATGACGTCGTGGCAAAACT
TGTTGCCGGTGGCACCGGGCACGAAAAGAGCGCTCTTGGGGTTCTCCACGAGCTTGGCCTCCTTC
TTGGCCAACGCACGCTTGGACCGCGCGTTCTTGGGCTTGATGGTTCTGATCATGGTAGAGATGCC
TTCGCGATGAGCTGTTTTCAGCCGCAGTGCGAAGATAAGAAAAGAGAAGGAGTGGGGGGAAAAAG
GAGAAGGGGAAATGATGTGAAGGTGTGGGTGATGGTGGCGTTGTGATGGTGGCAGAGGTTGATAG
TAGTTTTTGTTATTGGTGCTTCGGAATTTGAGTGCTTATTTTGCT
Right flanking sequence: Indices 29133 -- 29632
TATGACAGATTTCCGTATTGGGTCACAGGAACAGTATTCAGACCAGAACTGAAGAGTTGGTGAAA
TGTAACCACACGAATCGTGGTTACCAAATGTTTTGGGATTTTACTAGTTTCGATATCTCGATATC
CTTTTTACAAGCATTCCTAAAGGCTTTTCTAAAACTTTTCGATTAATCTCTGTCACATAAATACA
AGCTTTCTATGGTATCTATTACAACCCCTCGAGGAACCCGTTGGAGGTGCCCCGCTTCATGAACG
TAGGCACGTGGTCAAAGTCCCCACGCTTCACCTTGGCCAACGTCTCGTCGCTCAACATGCCCCGC
TGCGAGATCGACAAGAGGTCCTCCTTGGTAGCATTTTCCGCGTTGGGGCCCAACTTGCCGCCAAA
CAACGCGGTCCCCGACAGCTTCACAAAGTCCACGAGGGCCTCGTCGGCGTCGGGGTAGGTCAACA
TCGACATCACCAGTTCCTTGTGGCACCCTTTTTGCACGGGCTCGC
Found at i:31625 original size:17 final size:17
Alignment explanation
Indices: 31616--31658 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
31606 GTTGTTTTTT
31616 CAACCCCGTTCTTTTGC
1 CAACCCCGTTCTTTTGC
31633 CAACCCCGTTCTTTTGC
1 CAACCCCGTTCTTTTGC
31650 CAACCCCGT
1 CAACCCCGT
31659 CCCCTTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.14, C:0.44, G:0.12, T:0.30
Consensus pattern (17 bp):
CAACCCCGTTCTTTTGC
Left flanking sequence: Indices 31116 -- 31615
GGCGTGTTTGTGGCATTCGGAGTGTCGTAAATCGGTGCCCACATATCTTGGCGATTTAAGCTCGG
ACCATTGTTCTTTTAGATAAGCAACTACCCCAGACTGAGCTGCTGAAACGGGAAGCACCATGTGA
AAAGCAACCCCCGTTTCAGACAGTTTTACGTCGCTAGTGGCATCCTCAACCATCGTAATTGCATC
CGGTCGAAGCACCGGCTCCTCGACACAAAACCACTCTTCACAAGCCACCCAAATGTCGCCAAGCC
GATGAAAGCCAAGCTTTGGCGTAGATCCTCGCCAGGCACCGCTCCCAAGCCCCCAAACCATTCCG
AGGCCTGACCTTCCCCCAGGCGAGCCACCCCACACGAGCCACCCAGTTTACGCGGGGTTGCTCGG
GTTATCTCCGTAAAGTACAGAGGACTGCGCAAAAGTGCATTCGTCGTCACCCACACAGATGAAAC
GACCACACGGGAGAACAAGCCCATCCGAACTACCCGTTGTTTTTT
Right flanking sequence: Indices 31659 -- 32158
CCCCTTCTCTGCTATCCCACTTTGTCCTTCGCTCGTGCGGCGGCATTGACCTCTAACGGCTATTT
TTCGCGCACTGATGTCAACCACACATAACCGAGACCACCAGCGTTGCCCTACCCCAGCACCTCAA
CCATGGACAAAGAGGTGAGTGTGTTCAACCCCAAGGTGCTTATGCTCTCGACTGGCATGTGTGCC
ACGGGGCTCGCGGCGTTTGTAGTGCTGCGCCGTCTAGCACGGGTTAGAACCCCCCAAGAGCTTGA
TCCACGCAACTTTGGCAAGCAAATGCGAGGAGTGGTGACTCGGGTGGGCGATGGCGACAACTTCC
GGTTCTACCACACCCCCGGGGGCTTTCTTCTTGGCTGGGGCTGGCTCCGAAGCGTCCCCACGCTG
CGAGCAGAGCTCAAGAACCAGACGCTCCCCATTCGGATCGCGGGTGTAGACGCCCCCGAGCGACT
GCACTTTGGCCACCCTGCCCAGCCGTACTCCGAGGAGGCGTTGCA
Found at i:32519 original size:16 final size:16
Alignment explanation
Indices: 32497--32534 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32487 CATTAGAGTA
32497 AGGAGAGAAGG-AGAG
1 AGGAGAGAAGGAAGAG
*
32512 ATGGAGAGATGGAAGAG
1 A-GGAGAGAAGGAAGAG
32529 AGGAGA
1 AGGAGA
32535 AGATGTGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 14 0.70
17 5 0.25
ACGTcount: A:0.45, C:0.00, G:0.50, T:0.05
Consensus pattern (16 bp):
AGGAGAGAAGGAAGAG
Left flanking sequence: Indices 31997 -- 32496
CCCCGGGGGCTTTCTTCTTGGCTGGGGCTGGCTCCGAAGCGTCCCCACGCTGCGAGCAGAGCTCA
AGAACCAGACGCTCCCCATTCGGATCGCGGGTGTAGACGCCCCCGAGCGACTGCACTTTGGCCAC
CCTGCCCAGCCGTACTCCGAGGAGGCGTTGCACTGGTTGCAGAACTTTTTGACGGGGAAAAGCGT
CACCATCGTGCCCATGAGCGTCGACCAGTACCAGCGGGTGGTGGCCACGGCCCGGGTGTGGACGT
GGTTGGGCCGACGCGATGTGGGCGAGAGCATGCTCCGAGCGGGCACTGCGGTGGTGTACGAGGCG
AAGACGGGGGCGGAGTTTGGCGGCATGGAGAGCATATACCGGCGGGTGGAGGCCCGGGCCCAGCG
GAAGAAGACGGGCCTCTGGGGGTTGGGCAAGCGTATCAGTCCCGGTGACTACAAGCGCGAGAACT
ACCGGGGCGAGTCATAGCATATTCAGATTATAATGCATTAGAGTA
Right flanking sequence: Indices 32535 -- 33034
AGATGTGGAGAAGTGTTGAGGGCGTTCGTAGGGATTTACAGCTGGTGTCAGTCTGCTGCCAGGGT
CCGTTCAATTCGAGATGCTGGTTGTAACTAAAATCTTTCAGATTGGACTCTACAGTTTCGATTTA
TGACTGATCAGTGGGCAAGTGTAGACCCATAAAGACAACGGTGGTGGTATGCGAGACCTTTCCGG
TACCCACAAGCCCTAAAACAAGCATTGCTATGTCTCGATTGTTTAATTGAGCTAATTTTTTGGTG
GGCACCCTGTTGTTTAACTGTTTCTCCGTGACTTTCGGAAATTTTTTGAAAAATCTTCAAAATAC
AACAAACATGACAAAAGATCCAAAAAAAACCTACTGAACTTCACCATTCCTACCCCACTCTCACC
CGTACCATTAATATCTATCTATTCTACAAGCGCGCCCACCTTGGCCACCAACTCGTCGGCGTCGG
GCCGCGTCCGCGCCTCCGCGTACACTCTCACCGCATCCTCAGTGC
Found at i:39175 original size:18 final size:18
Alignment explanation
Indices: 39139--39188 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
39129 CGGGTGAGGG
39139 CGGGCTGCGAACC-GGGA
1 CGGGCTGCGAACCGGGGA
39156 CGGGCTGCGAACCGGGGA
1 CGGGCTGCGAACCGGGGA
*
39174 CGGGCTGCAAACCGG
1 CGGGCTGCGAACCGG
39189 TTGTCCAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 13 0.42
18 18 0.58
ACGTcount: A:0.18, C:0.30, G:0.46, T:0.06
Consensus pattern (18 bp):
CGGGCTGCGAACCGGGGA
Left flanking sequence: Indices 38639 -- 39138
GACGGTCTGGCCAATGGCCTGGATGAGCAACAACGAGCAGAACCCCTCGAGAATGGTGAACATGG
GCGTGCAGTGCAGCAAGAGCACCCGCCACACCTCCACCACCGGGTGGGGCGATGCCGTGGGCTGC
TGCTGGCAGTAGTTCAAAAAGTAGGTGAGGAGCGACGGCAAAATGACGTACTGGCCGTAGTAGAA
CACCCCTAGCACCCGCAAGTAGCGCGAGCGACGGGTCAACATGCGGAGCGTCGTGAGCACAAAGT
ACAAGAGGAACAACGTCAACAGGTAGAGGAGCCCACACTGGACGCCGCCCACATCGAAGGCAAGG
GGGATTGTCAACACCACAAGCAAGAGATACGCCAGCAGGAGCGCAAGCTTGATCGCTTCAGCAAG
CATGGCACCCTGGGTCTCGAGGAAATGGCGTCAAGATACCTCGGGGGTGCTCGTGTGGTGACAGG
AGTCAACTCTTTTTTCTCCAGGCGGGGCTGCAAACCGGGTGAGGG
Right flanking sequence: Indices 39189 -- 39688
TTGTCCAGCAAGTGTGGAGAGAGCCAGCTGCGGTGCGAGGGCGACAAGGGCGGGTGGGTAGAGGT
GGGGAATTGGGCAATGGACGCGGTGGTTTGTTTGGTTTTCTTTGTGGATTTCTCGTAATTTAGCT
GCCTTTGTGTCGCTGTGGCGATGCGATGGCCACACCTTCCATCTGGAAGTGCAGGCGAGGCTGCA
CGAAGCAGGGGGCGTGCAGTTGCTATCAGCGGGTGGGGAAGGAAGGTGGATGAGGTGTGGAGAAA
GGGTAGACGGCGTGTGTAGGGCTGTGGGCTGACGGTGGTGGGGTTCGTCTAGCTCAGCCGTGTGT
GGGACAATGGCGATCGACAATGGCAGCCATAGCCGAGGCAGGTGCACGAGCAGGAGGTGCACGCG
AGTGGTACGTGGCAGAGTGGAGAGACGCCGCAGGGGAGGGTGGGAAGTGGTAGAGAATGGATTGA
CGAAGTGGTGGAGAGCTGGAGAGATGGTGGAGAGGTGGTGGAGAG
Found at i:39676 original size:11 final size:11
Alignment explanation
Indices: 39660--39699 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
39650 GGTGGAGAGC
*
39660 TGGAGAGATGG
1 TGGAGAGGTGG
39671 TGGAGAGGTGG
1 TGGAGAGGTGG
39682 TGGAGAGGTGG
1 TGGAGAGGTGG
39693 TGGAGAG
1 TGGAGAG
39700 TTTATTGGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.60, T:0.17
Consensus pattern (11 bp):
TGGAGAGGTGG
Left flanking sequence: Indices 39160 -- 39659
CTGCGAACCGGGGACGGGCTGCAAACCGGTTGTCCAGCAAGTGTGGAGAGAGCCAGCTGCGGTGC
GAGGGCGACAAGGGCGGGTGGGTAGAGGTGGGGAATTGGGCAATGGACGCGGTGGTTTGTTTGGT
TTTCTTTGTGGATTTCTCGTAATTTAGCTGCCTTTGTGTCGCTGTGGCGATGCGATGGCCACACC
TTCCATCTGGAAGTGCAGGCGAGGCTGCACGAAGCAGGGGGCGTGCAGTTGCTATCAGCGGGTGG
GGAAGGAAGGTGGATGAGGTGTGGAGAAAGGGTAGACGGCGTGTGTAGGGCTGTGGGCTGACGGT
GGTGGGGTTCGTCTAGCTCAGCCGTGTGTGGGACAATGGCGATCGACAATGGCAGCCATAGCCGA
GGCAGGTGCACGAGCAGGAGGTGCACGCGAGTGGTACGTGGCAGAGTGGAGAGACGCCGCAGGGG
AGGGTGGGAAGTGGTAGAGAATGGATTGACGAAGTGGTGGAGAGC
Right flanking sequence: Indices 39700 -- 40199
TTTATTGGGCTCAGTGTTTGAGCAACACAGCGCTAGTGGATGGTAGAGAAGTGTCAGTGGGGTCA
GTGGGGTCAGTGGGGTCAGTGGGGACTAATCACCTGATGGCGACAAATGACTACAGTCGTGTCGA
TATGATGTGGTTGGTTGCAGGTGCAGACAGCGTGGTTGTAGAGTCGAGTACGTAGGAGGTCACTG
AAGTGACCGAACAGTGACCGAACAGGGGATCCTGGATTGGGCCGGGCATTGTCGTAGAAATTCAG
GATGCACCAGCACTCTGTCTGACGGTCACTAGGTTACGTTTAGCGTGACCTGGATTGGGGTAGTA
GCCTCAGAGCCCGAGAGTAATTCATAAAGCTATGGTTCACTGAGCATTGAGTTATGATGGAAGCC
AATCAATGGCATCACCACTCTCACCACCATACAATTAATTGTTTGTTGGGTACAGACCGACGGTT
TGGATCAAAGGGATCATCAGTAGTTTCTAAAATCCTTCGATAGGT
Found at i:39691 original size:19 final size:19
Alignment explanation
Indices: 39648--39699 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 19
39638 GATTGACGAA
39648 GTGGTGGAGAGCTGGAGAG
1 GTGGTGGAGAGCTGGAGAG
* *
39667 ATGGTGGAGAGGTGGTGGAGAG
1 GTGGTGGAGA---GCTGGAGAG
39689 GTGGTGGAGAG
1 GTGGTGGAGAG
39700 TTTATTGGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 10 0.37
22 17 0.63
ACGTcount: A:0.21, C:0.02, G:0.60, T:0.17
Consensus pattern (19 bp):
GTGGTGGAGAGCTGGAGAG
Left flanking sequence: Indices 39148 -- 39647
AACCGGGACGGGCTGCGAACCGGGGACGGGCTGCAAACCGGTTGTCCAGCAAGTGTGGAGAGAGC
CAGCTGCGGTGCGAGGGCGACAAGGGCGGGTGGGTAGAGGTGGGGAATTGGGCAATGGACGCGGT
GGTTTGTTTGGTTTTCTTTGTGGATTTCTCGTAATTTAGCTGCCTTTGTGTCGCTGTGGCGATGC
GATGGCCACACCTTCCATCTGGAAGTGCAGGCGAGGCTGCACGAAGCAGGGGGCGTGCAGTTGCT
ATCAGCGGGTGGGGAAGGAAGGTGGATGAGGTGTGGAGAAAGGGTAGACGGCGTGTGTAGGGCTG
TGGGCTGACGGTGGTGGGGTTCGTCTAGCTCAGCCGTGTGTGGGACAATGGCGATCGACAATGGC
AGCCATAGCCGAGGCAGGTGCACGAGCAGGAGGTGCACGCGAGTGGTACGTGGCAGAGTGGAGAG
ACGCCGCAGGGGAGGGTGGGAAGTGGTAGAGAATGGATTGACGAA
Right flanking sequence: Indices 39700 -- 40199
TTTATTGGGCTCAGTGTTTGAGCAACACAGCGCTAGTGGATGGTAGAGAAGTGTCAGTGGGGTCA
GTGGGGTCAGTGGGGTCAGTGGGGACTAATCACCTGATGGCGACAAATGACTACAGTCGTGTCGA
TATGATGTGGTTGGTTGCAGGTGCAGACAGCGTGGTTGTAGAGTCGAGTACGTAGGAGGTCACTG
AAGTGACCGAACAGTGACCGAACAGGGGATCCTGGATTGGGCCGGGCATTGTCGTAGAAATTCAG
GATGCACCAGCACTCTGTCTGACGGTCACTAGGTTACGTTTAGCGTGACCTGGATTGGGGTAGTA
GCCTCAGAGCCCGAGAGTAATTCATAAAGCTATGGTTCACTGAGCATTGAGTTATGATGGAAGCC
AATCAATGGCATCACCACTCTCACCACCATACAATTAATTGTTTGTTGGGTACAGACCGACGGTT
TGGATCAAAGGGATCATCAGTAGTTTCTAAAATCCTTCGATAGGT
Found at i:39766 original size:9 final size:9
Alignment explanation
Indices: 39752--39788 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
39742 GTAGAGAAGT
39752 GTCAGTGGG
1 GTCAGTGGG
39761 GTCAGTGGG
1 GTCAGTGGG
39770 GTCAGTGGG
1 GTCAGTGGG
39779 GTCAGTGGG
1 GTCAGTGGG
39788 G
1 G
39789 ACTAATCACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.11, C:0.11, G:0.57, T:0.22
Consensus pattern (9 bp):
GTCAGTGGG
Left flanking sequence: Indices 39252 -- 39751
GTGGGGAATTGGGCAATGGACGCGGTGGTTTGTTTGGTTTTCTTTGTGGATTTCTCGTAATTTAG
CTGCCTTTGTGTCGCTGTGGCGATGCGATGGCCACACCTTCCATCTGGAAGTGCAGGCGAGGCTG
CACGAAGCAGGGGGCGTGCAGTTGCTATCAGCGGGTGGGGAAGGAAGGTGGATGAGGTGTGGAGA
AAGGGTAGACGGCGTGTGTAGGGCTGTGGGCTGACGGTGGTGGGGTTCGTCTAGCTCAGCCGTGT
GTGGGACAATGGCGATCGACAATGGCAGCCATAGCCGAGGCAGGTGCACGAGCAGGAGGTGCACG
CGAGTGGTACGTGGCAGAGTGGAGAGACGCCGCAGGGGAGGGTGGGAAGTGGTAGAGAATGGATT
GACGAAGTGGTGGAGAGCTGGAGAGATGGTGGAGAGGTGGTGGAGAGGTGGTGGAGAGTTTATTG
GGCTCAGTGTTTGAGCAACACAGCGCTAGTGGATGGTAGAGAAGT
Right flanking sequence: Indices 39789 -- 40288
ACTAATCACCTGATGGCGACAAATGACTACAGTCGTGTCGATATGATGTGGTTGGTTGCAGGTGC
AGACAGCGTGGTTGTAGAGTCGAGTACGTAGGAGGTCACTGAAGTGACCGAACAGTGACCGAACA
GGGGATCCTGGATTGGGCCGGGCATTGTCGTAGAAATTCAGGATGCACCAGCACTCTGTCTGACG
GTCACTAGGTTACGTTTAGCGTGACCTGGATTGGGGTAGTAGCCTCAGAGCCCGAGAGTAATTCA
TAAAGCTATGGTTCACTGAGCATTGAGTTATGATGGAAGCCAATCAATGGCATCACCACTCTCAC
CACCATACAATTAATTGTTTGTTGGGTACAGACCGACGGTTTGGATCAAAGGGATCATCAGTAGT
TTCTAAAATCCTTCGATAGGTCAGAAAATACGAAATAGCCACGGAAATAGCTCGGGAAATATAGT
TACGAAACCCAGTAGAGATCACTACGGACGCAAACCCTACTCCAC
Found at i:40333 original size:19 final size:19
Alignment explanation
Indices: 40311--40395 Score: 93
Period size: 18 Copynumber: 4.6 Consensus size: 19
40301 GATGTTAATC
* *
40311 TCAATACACTATGTGGATA
1 TCAATACACCATGTGGTTA
*
40330 TCAATACACCATG-GGGTA
1 TCAATACACCATGTGGTTA
* *
40348 TCGATACACCATATGGTTA
1 TCAATACACCATGTGGTTA
*
40367 TCAATAC-CTATGTGGTTA
1 TCAATACACCATGTGGTTA
*
40385 TCACTACACCA
1 TCAATACACCA
40396 CGTTGTTCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
18 30 0.56
19 24 0.44
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (19 bp):
TCAATACACCATGTGGTTA
Left flanking sequence: Indices 39811 -- 40310
ATGACTACAGTCGTGTCGATATGATGTGGTTGGTTGCAGGTGCAGACAGCGTGGTTGTAGAGTCG
AGTACGTAGGAGGTCACTGAAGTGACCGAACAGTGACCGAACAGGGGATCCTGGATTGGGCCGGG
CATTGTCGTAGAAATTCAGGATGCACCAGCACTCTGTCTGACGGTCACTAGGTTACGTTTAGCGT
GACCTGGATTGGGGTAGTAGCCTCAGAGCCCGAGAGTAATTCATAAAGCTATGGTTCACTGAGCA
TTGAGTTATGATGGAAGCCAATCAATGGCATCACCACTCTCACCACCATACAATTAATTGTTTGT
TGGGTACAGACCGACGGTTTGGATCAAAGGGATCATCAGTAGTTTCTAAAATCCTTCGATAGGTC
AGAAAATACGAAATAGCCACGGAAATAGCTCGGGAAATATAGTTACGAAACCCAGTAGAGATCAC
TACGGACGCAAACCCTACTCCACAGTCAAAATCGAGATGTTAATC
Right flanking sequence: Indices 40396 -- 40895
CGTTGTTCTCTTGGGCAGGCACCCACTACACTACCTCATTCTCGCTATATTAGCTATGCTAGTTA
ATCCACTACGTGAATAGATGCAAAATGTTGACGTCGGGGTTCTTCAGGTACTTGAACAAGAGCTC
GGCCAACTCGGCGTGGCGGAGCTCGGCCACCGTCTCCCAGAGACTGCCGTCCTCCACCCGGTTGT
TCTGCGGCTGCTGGTGCACGTACACCATGTGGAGCAACCGGTCGATCGCCGCTGCCACGTCGCGG
CGTGCCGCGTCCACGGTGTCGTCGCTGGTCCACTGGCCCAACCGCACCACGAGCCGGAACAACGG
GTCGATGCTGGCCACCGAGACAAAGTGCTGGCGTTTGTCGGACAAGTCCATCAGAAAGAGCACCT
GCTCTACCACCTTGTGCACCGGCAGCAACCGCTCAAACGCCCCGGGCCGGGTGTAGTGGCTGAAC
AGCGACACGAGCATCCGGTCCGCCTGGTAGCACCGGTAGTTGTAG
Found at i:42341 original size:14 final size:15
Alignment explanation
Indices: 42319--42351 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
42309 GTGTGGCGGT
42319 GTGGCGGGAA-TAGG
1 GTGGCGGGAAGTAGG
*
42333 GTGGTGGGAAGTAGG
1 GTGGCGGGAAGTAGG
42348 GTGG
1 GTGG
42352 GTGGCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.18, C:0.03, G:0.61, T:0.18
Consensus pattern (15 bp):
GTGGCGGGAAGTAGG
Left flanking sequence: Indices 41819 -- 42318
GATGCGGTAGAGGAGCTCCTGCGGGAGCCGCTCGAGGATTGACGGGGCTGGCTCGTCGGGCTCGG
CCACCGTGAGCTGTTTGGGATGGTGGATGGGAGGAGGGGATGGGTCGGGCGGGGCCGGGAGGCCC
AATCGCTGGCGTTTGAGGGCATGTGAGAGGCCGCTGGCCGAGTTCGGGGCCTGGGAGCGGTGCCT
ACGCTTTCGGGTCGCCTTTCCTGGCTGGACAAACCCCATACACGGGTCGGAGGTCAGGGTAGGGT
ATGGTGGGCTTGGGAGGCGTGGAAGGGTCGAAACCAGGCGGTTTGAGTTATAGGGGGAACCACGG
GCGAGCTTCGGGGATGCTGGAGGGGTTGGATGCTCGGAATGGGCGTGGTGGGCGCGGGTATCGGG
GGTCCCTTGGGGATGTTCGTTTGTGATGATGGCCTGCAGATAGCTGGATCATGATGGTGAGCCGC
ACGTGAGGGGAAGACGTGGATGGGGAAAGCGAGTGGTGTGGCGGT
Right flanking sequence: Indices 42352 -- 42851
GTGGCATTTTCCGGAGTGGGTGGGAGTGGATGGGAGTGGGTGGGGAGTCCTTTTCCGTTATTTGT
TCGATTGTGTCAAAAAAGTGGAAAATAGACCCATGCCTACTAACGAGACTTAGTGTAGCGAGCCT
CGGCGATAAGACGCGACAAGAATAGCCCAATGAGCCCATTTTGGGGGGTGGAACAAAAGCACAAC
CAACACCGGTCCCGTTTCCGTGCCCGGTTTGCCTGCCACCTTCCCCTCCTTTCCCGCCGTTGGCC
TCGCCTGCTGCCAACTGGCTACCGGTCGTTGCGAGCACGCGGTCTCGATGGAACCTAAAACGGGT
AAACCTAAATAGTGTCAGCGATAGGCGAAAACGCCTCCAGACAGCCAAGCCTGCCCTAAGCCCCT
GTAATCAGAAGGAAGGTGCTATGTAGACAGAACGGGGTGAGCCATTCATGAGTCACCGTACGAGT
CACCGTACGAGTCAACTCGCGCCATCACTCGCCTCATCCACTCGC
Found at i:42379 original size:10 final size:10
Alignment explanation
Indices: 42364--42395 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
42354 GGCATTTTCC
42364 GGAGTGGGTG
1 GGAGTGGGTG
*
42374 GGAGTGGATG
1 GGAGTGGGTG
42384 GGAGTGGGTG
1 GGAGTGGGTG
42394 GG
1 GG
42396 GAGTCCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.12, C:0.00, G:0.69, T:0.19
Consensus pattern (10 bp):
GGAGTGGGTG
Left flanking sequence: Indices 41864 -- 42363
GGCTGGCTCGTCGGGCTCGGCCACCGTGAGCTGTTTGGGATGGTGGATGGGAGGAGGGGATGGGT
CGGGCGGGGCCGGGAGGCCCAATCGCTGGCGTTTGAGGGCATGTGAGAGGCCGCTGGCCGAGTTC
GGGGCCTGGGAGCGGTGCCTACGCTTTCGGGTCGCCTTTCCTGGCTGGACAAACCCCATACACGG
GTCGGAGGTCAGGGTAGGGTATGGTGGGCTTGGGAGGCGTGGAAGGGTCGAAACCAGGCGGTTTG
AGTTATAGGGGGAACCACGGGCGAGCTTCGGGGATGCTGGAGGGGTTGGATGCTCGGAATGGGCG
TGGTGGGCGCGGGTATCGGGGGTCCCTTGGGGATGTTCGTTTGTGATGATGGCCTGCAGATAGCT
GGATCATGATGGTGAGCCGCACGTGAGGGGAAGACGTGGATGGGGAAAGCGAGTGGTGTGGCGGT
GTGGCGGGAATAGGGTGGTGGGAAGTAGGGTGGGTGGCATTTTCC
Right flanking sequence: Indices 42396 -- 42895
GAGTCCTTTTCCGTTATTTGTTCGATTGTGTCAAAAAAGTGGAAAATAGACCCATGCCTACTAAC
GAGACTTAGTGTAGCGAGCCTCGGCGATAAGACGCGACAAGAATAGCCCAATGAGCCCATTTTGG
GGGGTGGAACAAAAGCACAACCAACACCGGTCCCGTTTCCGTGCCCGGTTTGCCTGCCACCTTCC
CCTCCTTTCCCGCCGTTGGCCTCGCCTGCTGCCAACTGGCTACCGGTCGTTGCGAGCACGCGGTC
TCGATGGAACCTAAAACGGGTAAACCTAAATAGTGTCAGCGATAGGCGAAAACGCCTCCAGACAG
CCAAGCCTGCCCTAAGCCCCTGTAATCAGAAGGAAGGTGCTATGTAGACAGAACGGGGTGAGCCA
TTCATGAGTCACCGTACGAGTCACCGTACGAGTCAACTCGCGCCATCACTCGCCTCATCCACTCG
CCCATTACTCGCCCAATCACTCGCCACCATCCACCAAATCTACCC
Found at i:42808 original size:12 final size:12
Alignment explanation
Indices: 42791--42820 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
42781 AGCCATTCAT
42791 GAGTCACCGTAC
1 GAGTCACCGTAC
42803 GAGTCACCGTAC
1 GAGTCACCGTAC
42815 GAGTCA
1 GAGTCA
42821 ACTCGCGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.17
Consensus pattern (12 bp):
GAGTCACCGTAC
Left flanking sequence: Indices 42291 -- 42790
GGATGGGGAAAGCGAGTGGTGTGGCGGTGTGGCGGGAATAGGGTGGTGGGAAGTAGGGTGGGTGG
CATTTTCCGGAGTGGGTGGGAGTGGATGGGAGTGGGTGGGGAGTCCTTTTCCGTTATTTGTTCGA
TTGTGTCAAAAAAGTGGAAAATAGACCCATGCCTACTAACGAGACTTAGTGTAGCGAGCCTCGGC
GATAAGACGCGACAAGAATAGCCCAATGAGCCCATTTTGGGGGGTGGAACAAAAGCACAACCAAC
ACCGGTCCCGTTTCCGTGCCCGGTTTGCCTGCCACCTTCCCCTCCTTTCCCGCCGTTGGCCTCGC
CTGCTGCCAACTGGCTACCGGTCGTTGCGAGCACGCGGTCTCGATGGAACCTAAAACGGGTAAAC
CTAAATAGTGTCAGCGATAGGCGAAAACGCCTCCAGACAGCCAAGCCTGCCCTAAGCCCCTGTAA
TCAGAAGGAAGGTGCTATGTAGACAGAACGGGGTGAGCCATTCAT
Right flanking sequence: Indices 42821 -- 43320
ACTCGCGCCATCACTCGCCTCATCCACTCGCCCATTACTCGCCCAATCACTCGCCACCATCCACC
AAATCTACCCACATAATGCACCACGCTAACCTATCACAATGCTAACGGCCGCTTACATGCCCGTT
TCACCATGGCCTGAGCTGGGCGTGCCCAGACACTGCGTCTTTGCATGAGGATTGCATGATCCATG
AGTCAAACGCATAGTCTCGGACTAAATGTCGCAAATATGACTGGTCGAAGCGAATCAGGCAGCTC
GCGTAGGCAGGCCGCCCAGGCGAAACCGTTGCACCAGGGCGTCCACCGCACTTGCACTGAGCGCC
CACCCGTCCTCTACACCACTCTACACTATTTTCCTACCGTCTCTCAAACCCCTAGCTCTTGTTTC
CGGTCGCAAACCCCGGAACGGCTCGTCACCGGTGTCAATGCAGACGCACGAGCGGAACCGGCAAA
CCCCTGGGCAAACGCCTGGAGCCAGCCCGACGGCCCGTAGACAGA
Found at i:42836 original size:12 final size:11
Alignment explanation
Indices: 42821--42875 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 11
42811 GTACGAGTCA
42821 ACTCGCGCCATC
1 ACTCGC-CCATC
42833 ACTCGCCTCATCC
1 ACTCGCC-CAT-C
*
42846 ACTCGCCCATT
1 ACTCGCCCATC
42857 ACTCGCCCAATC
1 ACTCGCCC-ATC
42869 ACTCGCC
1 ACTCGCC
42876 ACCATCCACC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
11 9 0.24
12 21 0.55
13 8 0.21
ACGTcount: A:0.18, C:0.51, G:0.11, T:0.20
Consensus pattern (11 bp):
ACTCGCCCATC
Left flanking sequence: Indices 42321 -- 42820
GGCGGGAATAGGGTGGTGGGAAGTAGGGTGGGTGGCATTTTCCGGAGTGGGTGGGAGTGGATGGG
AGTGGGTGGGGAGTCCTTTTCCGTTATTTGTTCGATTGTGTCAAAAAAGTGGAAAATAGACCCAT
GCCTACTAACGAGACTTAGTGTAGCGAGCCTCGGCGATAAGACGCGACAAGAATAGCCCAATGAG
CCCATTTTGGGGGGTGGAACAAAAGCACAACCAACACCGGTCCCGTTTCCGTGCCCGGTTTGCCT
GCCACCTTCCCCTCCTTTCCCGCCGTTGGCCTCGCCTGCTGCCAACTGGCTACCGGTCGTTGCGA
GCACGCGGTCTCGATGGAACCTAAAACGGGTAAACCTAAATAGTGTCAGCGATAGGCGAAAACGC
CTCCAGACAGCCAAGCCTGCCCTAAGCCCCTGTAATCAGAAGGAAGGTGCTATGTAGACAGAACG
GGGTGAGCCATTCATGAGTCACCGTACGAGTCACCGTACGAGTCA
Right flanking sequence: Indices 42876 -- 43375
ACCATCCACCAAATCTACCCACATAATGCACCACGCTAACCTATCACAATGCTAACGGCCGCTTA
CATGCCCGTTTCACCATGGCCTGAGCTGGGCGTGCCCAGACACTGCGTCTTTGCATGAGGATTGC
ATGATCCATGAGTCAAACGCATAGTCTCGGACTAAATGTCGCAAATATGACTGGTCGAAGCGAAT
CAGGCAGCTCGCGTAGGCAGGCCGCCCAGGCGAAACCGTTGCACCAGGGCGTCCACCGCACTTGC
ACTGAGCGCCCACCCGTCCTCTACACCACTCTACACTATTTTCCTACCGTCTCTCAAACCCCTAG
CTCTTGTTTCCGGTCGCAAACCCCGGAACGGCTCGTCACCGGTGTCAATGCAGACGCACGAGCGG
AACCGGCAAACCCCTGGGCAAACGCCTGGAGCCAGCCCGACGGCCCGTAGACAGAGCAACCGTCC
CAGCCTCAGCCCCGTCACTGTTGCTCCCGCCTCTTTGTTCCCCCA
Found at i:47576 original size:22 final size:21
Alignment explanation
Indices: 47515--47630 Score: 108
Period size: 22 Copynumber: 5.4 Consensus size: 21
47505 TCGTTGAATG
*
47515 TGAATGTATGTTTTCAGATTGA
1 TGAATGTATGTTTTCTGATT-A
* *
47537 -GAATGTGTGATTTCCTGATTA
1 TGAATGTATG-TTTTCTGATTA
*
47558 TGATTGTATGTTTTTCTGATTA
1 TGAATGTATG-TTTTCTGATTA
* * * *
47580 TAAATGTAGGATTCTCTGATTG
1 TGAATGTATG-TTTTCTGATTA
*
47602 TGAATGTATGATTTCTGATTA
1 TGAATGTATGTTTTCTGATTA
47623 TGAATGTA
1 TGAATGTA
47631 CGGTGTACTG
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
21 25 0.34
22 49 0.66
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.47
Consensus pattern (21 bp):
TGAATGTATGTTTTCTGATTA
Left flanking sequence: Indices 47015 -- 47514
GAAGGAGGCGCTTGTGGCTGCGCTCTTTGGCAACTTGGCGGCGCTGGTGCGGGTGTTGCCTGTGG
CGGAGGTCACCCACAAGCTCAACAACACCCTCAAGTTCCTCCGGATGGTGCACTTGCACAAGTTG
CTGGTGGCCAACATGGGGGCGTTGATCGCGCTCATGGGGATGGCGCGGCTCGACGAGCTTTTACA
TATTCTCAAGACGAAGATGGTGGCGGCCGGGTCGGTGGCGGACGTGGTGCAGTTCTTCTACTTAG
AGACCTGGGCCAAGCGCGACGCCGACAAGCACTACTTGGTGCGCCAGTTGCAGACGGCGTTTGCC
TCGGTGGACGACGCGGAGTCGGCCGAGGAGTTGCGGGCGGTGTCGCCATCGCATTAATGACTTTG
CATATTTACGACTAATGATACATTAGATAGGTTAATGGACAGGATGGAGAGAAGATGAAGGAGAA
GCGATGGCTTAGGATTTGTAAGAGAACCGACGCATTCGTTGAATG
Right flanking sequence: Indices 47631 -- 48130
CGGTGTACTGAATAAATTCAAATTACGACCCGTCAGCTACCATTTATAGATGATCAGGGCTGGAT
ACCACGAGGGCTTTCTACTTATTGCCTCTACTGATTGCTCTACGGATACATTAAAATCCAGTGGA
ACGGTGATAGAGCTATGTCTACAATTAAAATTAGGAAGCATCGCATTTCCGACCCGGAGCCGGGC
TCGCGTGGCACTACCCTTCCCAGTGCCCACTCGACTCCACCTGGCCCGTTTCCCCACTCCGCTGC
ACTTTTCCGTGCCATTACCTCGATCGCCCCACCTCCACAGCTTCCCCTCACTTCGGAGCCTGGTT
CGGAGTACTCTCGGCGATGGTGTCATTTCTCCGGGCCCGAACTACGCCCAAAAAACTGGAAAACT
GGACCACCCAAGCCAATCAGAGACCCCCAACTACACGCCCGTGCCCTTCGCTGCGCGTCCCTGCG
TTCCTGGAACCGTTACACCGTTTGTGTCAAAATGTCGCAACCGAG
Found at i:47630 original size:43 final size:44
Alignment explanation
Indices: 47513--47630 Score: 136
Period size: 43 Copynumber: 2.7 Consensus size: 44
47503 ATTCGTTGAA
*
47513 TGTGAATGTATGTTTTCAGATTGA-GAATGT-GTGATTTCCTGAT
1 TGTGAATGTATGTTTTCTGATT-ATGAATGTAGTGATTTCCTGAT
* * *
47556 TATGATTGTATGTTTTTCTGATTATAAATGTAG-GA-TTCTCTGAT
1 TGTGAATGTATG-TTTTCTGATTATGAATGTAGTGATTTC-CTGAT
*
47600 TGTGAATGTATGATTTCTGATTATGAATGTA
1 TGTGAATGTATGTTTTCTGATTATGAATGTA
47631 CGGTGTACTG
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
43 31 0.49
44 31 0.49
45 1 0.02
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (44 bp):
TGTGAATGTATGTTTTCTGATTATGAATGTAGTGATTTCCTGAT
Left flanking sequence: Indices 47013 -- 47512
CAGAAGGAGGCGCTTGTGGCTGCGCTCTTTGGCAACTTGGCGGCGCTGGTGCGGGTGTTGCCTGT
GGCGGAGGTCACCCACAAGCTCAACAACACCCTCAAGTTCCTCCGGATGGTGCACTTGCACAAGT
TGCTGGTGGCCAACATGGGGGCGTTGATCGCGCTCATGGGGATGGCGCGGCTCGACGAGCTTTTA
CATATTCTCAAGACGAAGATGGTGGCGGCCGGGTCGGTGGCGGACGTGGTGCAGTTCTTCTACTT
AGAGACCTGGGCCAAGCGCGACGCCGACAAGCACTACTTGGTGCGCCAGTTGCAGACGGCGTTTG
CCTCGGTGGACGACGCGGAGTCGGCCGAGGAGTTGCGGGCGGTGTCGCCATCGCATTAATGACTT
TGCATATTTACGACTAATGATACATTAGATAGGTTAATGGACAGGATGGAGAGAAGATGAAGGAG
AAGCGATGGCTTAGGATTTGTAAGAGAACCGACGCATTCGTTGAA
Right flanking sequence: Indices 47631 -- 48130
CGGTGTACTGAATAAATTCAAATTACGACCCGTCAGCTACCATTTATAGATGATCAGGGCTGGAT
ACCACGAGGGCTTTCTACTTATTGCCTCTACTGATTGCTCTACGGATACATTAAAATCCAGTGGA
ACGGTGATAGAGCTATGTCTACAATTAAAATTAGGAAGCATCGCATTTCCGACCCGGAGCCGGGC
TCGCGTGGCACTACCCTTCCCAGTGCCCACTCGACTCCACCTGGCCCGTTTCCCCACTCCGCTGC
ACTTTTCCGTGCCATTACCTCGATCGCCCCACCTCCACAGCTTCCCCTCACTTCGGAGCCTGGTT
CGGAGTACTCTCGGCGATGGTGTCATTTCTCCGGGCCCGAACTACGCCCAAAAAACTGGAAAACT
GGACCACCCAAGCCAATCAGAGACCCCCAACTACACGCCCGTGCCCTTCGCTGCGCGTCCCTGCG
TTCCTGGAACCGTTACACCGTTTGTGTCAAAATGTCGCAACCGAG
Found at i:49211 original size:11 final size:11
Alignment explanation
Indices: 49195--49219 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
49185 GTCCATGAGA
49195 AGAAGAGTCCG
1 AGAAGAGTCCG
49206 AGAAGAGTCCG
1 AGAAGAGTCCG
49217 AGA
1 AGA
49220 GAATTGGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.36, T:0.08
Consensus pattern (11 bp):
AGAAGAGTCCG
Left flanking sequence: Indices 48695 -- 49194
CCCGATCGCCAAGTGTCAGTTCTACAACGATGGGGTGCCCGACTTTGACAAGCTCACCGACCCGA
AGACCCACTCCGAGGCCATCGACGTGTTCCGGGACTACCTCCTGGCTCCGTGGGCGAAACAGACC
GCGGAGTACATCTACAATTACGACGGCAACGTGCCCCAGTACCGCAAGGGCCAGTGGCGCGCGAT
CTTGGAGAAGTCTGACCTGTTCAAGCAGGTGTTCCCCGAGCAGTTTCTCTTGAACTCGAACGTCC
AGACCAGGGACGAGGTGTACGGGTACTGGGCACTGCGGCTGTTCATCACCTGTTTGGACGAGGCC
AAGCAGCAGCAGATCCACCAGGATCTCAGTGATATTCTTGACAAGACGATCAACGACGACCTGTG
GATCGACGAGGCCCACACCAAGTTGCGCAAGCCCACAGGGGCCCACACGGTGGTGTTTGAAGTAG
AAAAGTAGCGAATAGATAGAGGAAGATGAAGAAGGGTCCATGAGA
Right flanking sequence: Indices 49220 -- 49719
GAATTGGTTGAAGCAGTCATACCAGAACACTAGTAAAAGCTCCAACCTAAAAACACGAGTAAAAG
CTTCAACACAAGACTACTAAAAGCCAAACTACTTAAAGATTTCATTCGTGTTGTCAATTCAGTTG
TTTATTATGCCTATTCTGCGTGGACTCGCCAGTTGTAGAGCTTCAACTCGTCGACCTTTTCGTCC
TCCCATCCCTTCACGTGGCCGGGGTTCGGCCGCTGTGGCTGCACCACGATCTTATCTACAAGGGC
ATGGGGCTTCTTCGGTGGTTCTGCCTGCTGCATCACCTGGGGCGGCTGCTCCTCCGACGCCTCGT
ACGCCTTCTTCTTCGAAAACGACTCGGTGCCGGTGAACCACACCTTGGCCAAGTAGTCGAGTCTC
TCGCCCTGGGCGTCCGAGTACTCAAAGACAGCGGCTGGAGCAACAAGCTCGGCGCCCTTCAAGTG
GCCCGGGTCCACCCGGTCGTAGGCACAGTACGTGTACCCCGAGCA
Found at i:53125 original size:22 final size:22
Alignment explanation
Indices: 53067--53235 Score: 135
Period size: 22 Copynumber: 7.4 Consensus size: 22
53057 GTCTGTGTTT
* *
53067 GCTCTCTTCTGTAGTTTGTTCG
1 GCTCTCTTCTGTAATTTCTTCG
* *
53089 GCTCTTTGCTTCTGTTATTCCTTCG
1 GCTC--T-CTTCTGTAATTTCTTCG
*
53114 GCTCTCTTCTGTCATTTCTTCG
1 GCTCTCTTCTGTAATTTCTTCG
*
53136 GCTCTCTTCTGTAATTTCTTTG
1 GCTCTCTTCTGTAATTTCTTCG
* * *
53158 GCTCTCTT-GGTGATTTCTTCA
1 GCTCTCTTCTGTAATTTCTTCG
* *
53179 GCTTTCTTTACTTCTGTGATTTCTTCA
1 GC--TC--T-CTTCTGTAATTTCTTCG
*
53206 GCTATAC-TCTGTAATTTCTTCG
1 GCTCT-CTTCTGTAATTTCTTCG
53228 GCTCTCTT
1 GCTCTCTT
53236 ACCACTGCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
21 12 0.10
22 65 0.54
23 6 0.05
24 1 0.01
25 19 0.16
26 3 0.03
27 14 0.12
ACGTcount: A:0.08, C:0.25, G:0.15, T:0.51
Consensus pattern (22 bp):
GCTCTCTTCTGTAATTTCTTCG
Left flanking sequence: Indices 52567 -- 53066
CAAGGTCGACGAGTACAACGAGTACTACCGGGCGGAGCGCGAGCGCATCCTCAAGAAGAAGGACG
ACGACGAGAAGGCCCGCCAGAACAAGAACTTGCACAAGCTCATGAGCGATATGGACATCAAGGGT
GGAAAGCCTGCTCCCGGCGACCTGGAGGTGGTGCTGGACCTCGAGCTGGACGACGAAAACCAGGG
CGAGGTGTTGCGGGACGAGGACGAGGCCGGTGGCCGGGTGTACAACTTCCCCGAGGACCGCCAGC
TGGAATTGCGCGACGACGAGGCGTTGCAGCAGCGGTACCAGGAGACGTTTGATGCCACGGCGAAG
ACGGCATCGCTGAAGACGGCCGAGGAGATTGCCCGGTACATTTCGCAGAGTCAATAGGTTAATGG
TAATGGTATTGAGATATGGAGCACCGTGGTGTGGCCAGGGTGGTGGTTTTAGTATTTATTTAGAG
TGGGTGTGGTTAGAGTTCTATGGTCCAGGTGTCTGGTCTGTGTTT
Right flanking sequence: Indices 53236 -- 53735
ACCACTGCAATTTCGTCGGCTATCGTTTCTTCTGTATCTCTCTCTGCTTTTTTCACAGTCACTTT
CCGGCTTACACTGATGAATTCCACGCGCTCAAATGGCGAGTCGGGGGCGTGGAACACCCCGTCGT
TGAGCGAGACCCGTAGCGTTCCTTCGCAACAGCCATCAACGAACAAGTCGGCGAAATACACGTCG
GAGTCCAATTCCTCGGCGATCCGCGCTAAAACACACTCCAAAGCGTCCTGGAAACTCGTCATCGA
CGTCAGCTGGTGTCTCGGGCGTAACTCATAGTAGAGTTCACCGGACTTTCCCTTTCGAGGATACT
TTAGACCGAAACCGTTGCGATGACGGTATATCTCCCAAAACGCACTAATGGCGATGCCAGCAAGA
AAAAGCACGAGGTACGCCAGCACGACCAAGCCAATGAACTTGAAGGCCTCCATGTCACGGATCCA
CCACGATTGTGTCGCCGTGACCATCAGATCCGGTGAAACGGGCTC
Found at i:53183 original size:27 final size:27
Alignment explanation
Indices: 53159--53208 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
53149 ATTTCTTTGG
53159 CTCT-CTT-GGTGATTTCTTCAGCTTT
1 CTCTACTTCGGTGATTTCTTCAGCTTT
* *
53184 CTTTACTTCTGTGATTTCTTCAGCT
1 CTCTACTTCGGTGATTTCTTCAGCT
53209 ATACTCTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 3 0.14
27 15 0.71
ACGTcount: A:0.10, C:0.24, G:0.14, T:0.52
Consensus pattern (27 bp):
CTCTACTTCGGTGATTTCTTCAGCTTT
Left flanking sequence: Indices 52659 -- 53158
ACTTGCACAAGCTCATGAGCGATATGGACATCAAGGGTGGAAAGCCTGCTCCCGGCGACCTGGAG
GTGGTGCTGGACCTCGAGCTGGACGACGAAAACCAGGGCGAGGTGTTGCGGGACGAGGACGAGGC
CGGTGGCCGGGTGTACAACTTCCCCGAGGACCGCCAGCTGGAATTGCGCGACGACGAGGCGTTGC
AGCAGCGGTACCAGGAGACGTTTGATGCCACGGCGAAGACGGCATCGCTGAAGACGGCCGAGGAG
ATTGCCCGGTACATTTCGCAGAGTCAATAGGTTAATGGTAATGGTATTGAGATATGGAGCACCGT
GGTGTGGCCAGGGTGGTGGTTTTAGTATTTATTTAGAGTGGGTGTGGTTAGAGTTCTATGGTCCA
GGTGTCTGGTCTGTGTTTGCTCTCTTCTGTAGTTTGTTCGGCTCTTTGCTTCTGTTATTCCTTCG
GCTCTCTTCTGTCATTTCTTCGGCTCTCTTCTGTAATTTCTTTGG
Right flanking sequence: Indices 53209 -- 53708
ATACTCTGTAATTTCTTCGGCTCTCTTACCACTGCAATTTCGTCGGCTATCGTTTCTTCTGTATC
TCTCTCTGCTTTTTTCACAGTCACTTTCCGGCTTACACTGATGAATTCCACGCGCTCAAATGGCG
AGTCGGGGGCGTGGAACACCCCGTCGTTGAGCGAGACCCGTAGCGTTCCTTCGCAACAGCCATCA
ACGAACAAGTCGGCGAAATACACGTCGGAGTCCAATTCCTCGGCGATCCGCGCTAAAACACACTC
CAAAGCGTCCTGGAAACTCGTCATCGACGTCAGCTGGTGTCTCGGGCGTAACTCATAGTAGAGTT
CACCGGACTTTCCCTTTCGAGGATACTTTAGACCGAAACCGTTGCGATGACGGTATATCTCCCAA
AACGCACTAATGGCGATGCCAGCAAGAAAAAGCACGAGGTACGCCAGCACGACCAAGCCAATGAA
CTTGAAGGCCTCCATGTCACGGATCCACCACGATTGTGTCGCCGT
Found at i:55780 original size:17 final size:18
Alignment explanation
Indices: 55754--55799 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
55744 GCTACGAGAC
*
55754 TCTTTAGTGCTAGTGA-T
1 TCTTTGGTGCTAGTGACT
55771 TCTTTGGTGCTAGTGACT
1 TCTTTGGTGCTAGTGACT
*
55789 T-TCTGGTGCTA
1 TCTTTGGTGCTA
55800 TCAGGGTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 24 0.92
18 2 0.08
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.46
Consensus pattern (18 bp):
TCTTTGGTGCTAGTGACT
Left flanking sequence: Indices 55254 -- 55753
CAAGTCGGCTATCACCTTCTCCACGGCTGGACTGGTAAAGGTGCGACATTCCGGAGTCGGACGCA
TATATGGATACTGGTGCAGGCCCGGGGAGTGGGGTGCGTGCGCGTGCTTCAGAAATTCCAAGTAG
TCGGGGCACTTCTTTGCGTTGTACTTGAAGGGCTTCCCGTGGTGAGGAGGGTCGTCGTAGGTGGG
GGCCACCTCGGTGCCGTCGGGCGACGACAGCATGTTGAACACGTAAAACAACGTGACCAACGCCA
ATGCCACCACGGCAATGCGCTCGGGGCGGAGCCTGACGCCATTGACTCGGATCATTGTTGGGGGA
CGAGGTGGTGGTTGCTAGATGGATCTGATTCGGGTCTGCCGCATCATCGGTGTGTGCAGGTTGGA
ACTACTAGTGGAGATCAGGTGGGGTGAGGGTGGGTGAGTGCGTGGGTGAGCGCGGTGGGCGGTTC
TATGTAGGTGCGAGGGAGAATATCAGTGTAGTAGTGCTACGAGAC
Right flanking sequence: Indices 55800 -- 56299
TCAGGGTGATGGTAGAACGGCTCTGTAGTTGTGTTTTTGGTGCGAGCCAAACAGGCCGTGACGTG
GAGGCGGACGCCTGCGTAGACAGATAGCCGAGTGATGGGCGATGATTGAGCTAAAGTGACTAATG
TACACGTGGGTATCTCTAAGGGGAACGGTGGCTACATACTGCGCTAGATCATTGCTAAAACCATA
AGGAGCCATGTGTACACGGTGGCTCCAACCACAGCCCCGTCCCCATGCCAATTAAACGAGAAGGG
CCAGTAGTCTGTGTTCAAGTCTCCTGTGGGGTATCCAACGTAGGAGTAACTTTCCCAGTCCACCG
TAGACACATTGGAGATGTTTGGCTTCCAGAGAGCGGCCCGAGTGGCCATGGGAACTTCGTCCTTG
ACGTCCACCACGCTCAGATCCAGCGTGAACTTGACAGGCCCAATACTGACCTCCATGGCATCGTA
GTCGACCACGGTGTACGCGTACCGCAAAAATGCGTCACCCAACTC
Found at i:62859 original size:15 final size:15
Alignment explanation
Indices: 62839--62870 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
62829 CTGCAAGTGT
62839 TGGTAACGAGGGCAC
1 TGGTAACGAGGGCAC
62854 TGGTAACGAGGGCAC
1 TGGTAACGAGGGCAC
62869 TG
1 TG
62871 AAGTGCACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.41, T:0.16
Consensus pattern (15 bp):
TGGTAACGAGGGCAC
Left flanking sequence: Indices 62339 -- 62838
TCCACTGCCCAGTTCCAGGGCGAGAAGCCCCAGCTCATGATTGCCTTCACTTGTAAGAAGTGCAA
CACCCGCAGTTCCCACACGTTTTCCAAACAGGCGTATCAGACGGGCCTGGTGCTCATCCAGTGTC
CCGGCTGCCAGGGCCGTCACTTGATTGCGGACAACCTCAAGATCTTCAGCGATAACAACTTCGAT
TTGGAGAAGTACCTTGCTGACAGTGGTCAGTCTGTTGGTGGAGTGGATACCTTGGTGTTTGAAGA
CATCCCCAAAGACTTGCGTGGTACTTTGGGGAGATACGCCCAGGATGCTCCCGAGGAGTACCGGG
AGAAGGAGGACGTCGACCGCAGTTTGCCGGAGGCGGAGAAGAAGAAATAGATGGATAGAGGTTAC
GAATGAATGATGACAGATAGAATAGCGGGGAGAGGTGGGCGGTGGGAGTGGTTTGTAGGCAATTT
TTCACCCACCAATAACTTGATTGGGTCTAATGCACCTGCAAGTGT
Right flanking sequence: Indices 62871 -- 63370
AAGTGCACTGAATGGCACTTGAGGTACCCGAATCAGAACCAGTGCTTGAATGTGTCACGACAAAC
ACGTTATCTTAAGCGGACTACACTGCTTTGCTCCTCCCTGGCTTCTTGCCACCAACCCGTCCCGA
TCGGGACCCTGCATAAATTTTTGCGACCTCACTAGTCGATAGAACACTCTAACCAGAACACCACC
ATGTTGCGTTTGTTTGGCAAAGCCTGTGCTAGCAGTCTCTCCCTCCGCACTGTTCACGCCCTCCG
GTTCAACTCGTCGTTGGCGGCCAAGTACCAGGAGAAGTTGAAGCAGCGTGCGGCCGAGCTCGGGA
TCAGCGATGTCGACGAGCTCAAGAACAAGCTTGCGGAGGACATCCAGGCCAAGAAGAAGCAGATG
AACGCTATGGACCCTCTCAAGGAGCTTGAAGCGTTTGAAAAGCAGCAGCGTGAGGAGTACGAGGC
CGACAAGGCCCGGTTGATCACCGACCGGGGTGCGGTGGACCCCAA
Found at i:65874 original size:11 final size:11
Alignment explanation
Indices: 65858--65897 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
65848 GGTGGAGTGA
65858 AAGTGGTGTGG
1 AAGTGGTGTGG
*
65869 ATGTGGTGCT-G
1 AAGTGGTG-TGG
65880 AAGTGGTGTGG
1 AAGTGGTGTGG
65891 AAGTGGT
1 AAGTGGT
65898 CTATTTATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.17, C:0.03, G:0.50, T:0.30
Consensus pattern (11 bp):
AAGTGGTGTGG
Left flanking sequence: Indices 65358 -- 65857
GTGGCGTCGTCGTGGTTGCCGGAGATGGCAAATATCGGGGTCCCCACGTTCAAATTGGGGTCCTC
GTAGTTGACGTTGTTGAACCCGTGGCTGAAATGGGTCGCGGGATCGGAGAGGAGCTCCATCTCTA
CCGGACGGTCACCCATGCAGTGGGCACGGATCAGCTTCATCACATGGTAGAGCGACTTCTTCGTG
GGCTTGTTGATGTGGAACAAGTCGCCTCCCTGGACGATCATGTCCACGTCTCGGTCCACTGCCAA
CGCGGTGATCTCGTCCCACGTTTTCCACCCGTCGTCACCACGGATGGGGTCGTCCTCGTTGTAGC
CCACATGGTTGTCTGTGGTCAAGAGGATGGAGAAGGTGTCCGGTCCCGGGGGGATGCTGTCAACT
AACATGGGACAGCCCTGGTCGCGTCGTGATATTATGCACGCATATACGAAGGACCAAGTGGGTGA
GATGAAAAGTGAAAAGTAGTGAAGAAGTGAGCGGAGGTGGAGTGA
Right flanking sequence: Indices 65898 -- 66397
CTATTTATAGTTCATGGCTGGGAGCGGGGTAAATGACGAGTGCTTAGGGAATTTGCCACCCATAC
CTCTGGGACATGAGCCTGCCCGATTGGGAAGGTAAACAGTGGGTGGGAGGATGTAGTATAGGGGT
ACTTGTAATATAGGGGTGAATTGCCTCTAGGTTTTGGCAGTATGAGCTACGAGTTTGAATTAATC
CACTGGTTTTTTGCCTACTTCGTCCGGTTCTTGGTGGTGGAGGCGCTTTGTACCGTCCAGTTCTT
GTTGATGGTGGTGGTGTTTCTCGCCAACCAGTTGCAAAATGTGATTACGCGAGCGATCCGGTTTC
TTTGTACCAACGATTGTGCCGCAGACTTCCTCGCTGGGACGTTGGTTGTGTCTGGGCTCAGTTTG
TGGATAGGCTACCGCTTCCGAAAGGTCCCAAAAAAGGACCAACGAGAGCCAGCACTCAACACGGG
TCCCCTGAACTACGTAAAGCTCCAGCAGCAGCGTAAGAAGGCACG
Found at i:66468 original size:9 final size:9
Alignment explanation
Indices: 66454--66502 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
66444 TAGTATGTAG
66454 TTGTTAAGT
1 TTGTTAAGT
66463 TTGTTAAGT
1 TTGTTAAGT
66472 TTGTTAAG-
1 TTGTTAAGT
*
66480 TTGTTGTAGT
1 TTGTT-AAGT
*
66490 TTGTTCAGT
1 TTGTTAAGT
66499 TTGT
1 TTGT
66503 CGTAGTTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
8 5 0.14
9 26 0.72
10 5 0.14
ACGTcount: A:0.16, C:0.02, G:0.24, T:0.57
Consensus pattern (9 bp):
TTGTTAAGT
Left flanking sequence: Indices 65954 -- 66453
CACCCATACCTCTGGGACATGAGCCTGCCCGATTGGGAAGGTAAACAGTGGGTGGGAGGATGTAG
TATAGGGGTACTTGTAATATAGGGGTGAATTGCCTCTAGGTTTTGGCAGTATGAGCTACGAGTTT
GAATTAATCCACTGGTTTTTTGCCTACTTCGTCCGGTTCTTGGTGGTGGAGGCGCTTTGTACCGT
CCAGTTCTTGTTGATGGTGGTGGTGTTTCTCGCCAACCAGTTGCAAAATGTGATTACGCGAGCGA
TCCGGTTTCTTTGTACCAACGATTGTGCCGCAGACTTCCTCGCTGGGACGTTGGTTGTGTCTGGG
CTCAGTTTGTGGATAGGCTACCGCTTCCGAAAGGTCCCAAAAAAGGACCAACGAGAGCCAGCACT
CAACACGGGTCCCCTGAACTACGTAAAGCTCCAGCAGCAGCGTAAGAAGGCACGGGAACACAAAA
GCTTGGCCTACAAAGAAGTCTAGTGGTGCATGGTTTAGTATGTAG
Right flanking sequence: Indices 66503 -- 67002
CGTAGTTAGTTAGGCTTGTCAAGCATCACTCAATCTAGGCCAACGCAGGAATCTCCTTGATGTCC
GTCTCATCGGTGTACTTGGCCTTGGCAATTGAGATGGTGTTCTCCTCCCAGTCGTACACCGCGTA
CACGTTCTGGAGGAAAGTGGCACCCAAAATGTAGTACGGATTCTTGTCGGACTTCTTCAACGCCC
CCAACTTACACACGTCGCCCTGCTTCCAGATAAATTGGGTGATAGGGATCTTAATGGTGAGACCG
TCGAATAAAAACTCCACAAACTTGGACTCGTCCTGTTCACAGTCAACGAAGTAGATGTTTGAAGC
AGCCTTGGCACCGGAGTACAACTTGGCAATCTCGTCGACCACGTTCAGAGGCAACACCGTGAGGG
TGTACCCCGAGTCCAAGCTGAAGATGGTGTTGGCGGTGATTTCCTTGCCGCCGTTGATCTTGAGA
CCCTTCACGGGCACAAACGGGTGCGCGGAGGGCTCCTGGGTGGAG
Found at i:66507 original size:19 final size:18
Alignment explanation
Indices: 66469--66514 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
66459 AAGTTTGTTA
*
66469 AGTTTGTTAAGTTGTTGT
1 AGTTTGTTAAGTTGTCGT
*
66487 AGTTTGTTCAGTTTGTCGT
1 AGTTTGTTAAG-TTGTCGT
*
66506 AGTTAGTTA
1 AGTTTGTTA
66515 GGCTTGTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.17, C:0.04, G:0.26, T:0.52
Consensus pattern (18 bp):
AGTTTGTTAAGTTGTCGT
Left flanking sequence: Indices 65969 -- 66468
GACATGAGCCTGCCCGATTGGGAAGGTAAACAGTGGGTGGGAGGATGTAGTATAGGGGTACTTGT
AATATAGGGGTGAATTGCCTCTAGGTTTTGGCAGTATGAGCTACGAGTTTGAATTAATCCACTGG
TTTTTTGCCTACTTCGTCCGGTTCTTGGTGGTGGAGGCGCTTTGTACCGTCCAGTTCTTGTTGAT
GGTGGTGGTGTTTCTCGCCAACCAGTTGCAAAATGTGATTACGCGAGCGATCCGGTTTCTTTGTA
CCAACGATTGTGCCGCAGACTTCCTCGCTGGGACGTTGGTTGTGTCTGGGCTCAGTTTGTGGATA
GGCTACCGCTTCCGAAAGGTCCCAAAAAAGGACCAACGAGAGCCAGCACTCAACACGGGTCCCCT
GAACTACGTAAAGCTCCAGCAGCAGCGTAAGAAGGCACGGGAACACAAAAGCTTGGCCTACAAAG
AAGTCTAGTGGTGCATGGTTTAGTATGTAGTTGTTAAGTTTGTTA
Right flanking sequence: Indices 66515 -- 67014
GGCTTGTCAAGCATCACTCAATCTAGGCCAACGCAGGAATCTCCTTGATGTCCGTCTCATCGGTG
TACTTGGCCTTGGCAATTGAGATGGTGTTCTCCTCCCAGTCGTACACCGCGTACACGTTCTGGAG
GAAAGTGGCACCCAAAATGTAGTACGGATTCTTGTCGGACTTCTTCAACGCCCCCAACTTACACA
CGTCGCCCTGCTTCCAGATAAATTGGGTGATAGGGATCTTAATGGTGAGACCGTCGAATAAAAAC
TCCACAAACTTGGACTCGTCCTGTTCACAGTCAACGAAGTAGATGTTTGAAGCAGCCTTGGCACC
GGAGTACAACTTGGCAATCTCGTCGACCACGTTCAGAGGCAACACCGTGAGGGTGTACCCCGAGT
CCAAGCTGAAGATGGTGTTGGCGGTGATTTCCTTGCCGCCGTTGATCTTGAGACCCTTCACGGGC
ACAAACGGGTGCGCGGAGGGCTCCTGGGTGGAGGGGAACTTGACC
Found at i:68032 original size:14 final size:13
Alignment explanation
Indices: 68008--68039 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
67998 CTGATTCCCG
68008 CTCGAGTTGCTGA
1 CTCGAGTTGCTGA
68021 CTCGACGTTGCTGA
1 CTCGA-GTTGCTGA
68035 CTCGA
1 CTCGA
68040 TGGTTCCGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.28
Consensus pattern (13 bp):
CTCGAGTTGCTGA
Left flanking sequence: Indices 67508 -- 68007
CCAGGAACGGGGTGATCTGGGCAGGGACGTCAAACAGGACGTCCAACGACAAGACCTTGGGGCTC
GACTGGGCGGGGAGGGCGACCACGGCCGCAGCCAATGACAAGAGGGTAGAGAACTTCATTGCTGA
GGAGCAGGAGGCATTTACACCCTTTTATAATCACAGAGCCGTACATTTACGGATTTAGTAAACTC
CCGGGCTCGCAATATGGGACGGTCACAAAGCCGGTCAATAGCACAAAACGGCGGCAGAACAATTA
GAGCAATTGTGCCATTCCCTTGTTGATGCGGGAAAACGCCGAAGGCGCTGGCGGGTGGCACGGTA
GATGAAATGTGCCCGACACTGTAACTTTGTGATATACCCGTGTGATGAGGTGAAAAGAGTGCTCA
AAAGCTTTATTGATGATTAACGTTTCTCCGCATTTGTGGTAGTTTTTCCGTAAGCGAGACACAAG
ATTTAAGCGGGATATTCAGCATACCCCTATATGGCCTGATTCCCG
Right flanking sequence: Indices 68040 -- 68539
TGGTTCCGAGTCACGCTGTATTTTTAGAAACCCACAAAGCCGATCCATGCGTTGGGCGCGTTGAA
TGCGTTATGATGGTTATGCTACCTGATCTGGAAGCCCCTGCACAGAGCACGTAGCTGAGGCTATC
TATGCGGTAGATAACAGGAAGAGCAGGCATATACGCCGCCTACGAAGCGAACGACACAAACGAAG
AAACCAACGAAACCTTTCGGCACGTTTGATTTACAAACCAGCTCGCGATCTGTATCTGTCGCTTT
CTTCCCTCGCTTCTTCCCTCTTTCCTTCCCTCTTCCCTTATCTCGCTTCCCCTCTTTTCTTCCAG
TCGCACTCTTCTCTCCGATCGCGGTGCATCCCAATTCAGCATGAGCACTGCCGAGCTAGCAGAGC
GCCAGCACGACGAGGTCAATTCGATCGCGCTGATCTACGGCGACATCTTCAAGGATGTCACCAGC
ACCAAGAAGGTGTGGAACCGCGAGCCGCTGCCCCACTTCCAGATC
Found at i:74542 original size:14 final size:13
Alignment explanation
Indices: 74519--74549 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
74509 AGCCTTATTA
74519 TATTTATTAGCCT
1 TATTTATTAGCCT
74532 TATTCTATTAGCCT
1 TATT-TATTAGCCT
74546 TATT
1 TATT
74550 ACATCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.23, C:0.16, G:0.06, T:0.55
Consensus pattern (13 bp):
TATTTATTAGCCT
Left flanking sequence: Indices 74019 -- 74518
GAAGAGTCCTTCCTCCACCACAGAACACCCCGCATTCGAGTACCACCTCATCACCACCTGACATC
AGCAGACCACGACTCTATCTCTCACAGCCAGTGACGTGTGCTCAACAATGACTCCCGAAACCAAA
GAAACACCCCACCTGGACACCTCCACGCCCCCGACCCCGCCCGCGTACCACATCCACATCAACAA
GGACAAAGAGATCCTCCTTCTCACCCAGATCGCCCACGAGCTCCAGGCGCTCCACTCCACCCAGC
GCAAGGTCCACGCCGAGCTCCACGAACTCACCCAGCCATCCGCGCCCAAGCGGGTGTGCTTTGCT
CCCGATTGTAAGGACACCCCCAAGCCCAAGCCCGACCGCGCCTTCTACTACATGGCCGGGATCAT
GCTCGTGGTGGCGGCCACTGGGTTCTTTGCGGTGTCCGGGGTGTGCTACCTCCACCGGATGGGGT
ATTAGCCTAATAGCCCTACTAGCCTTATTAAATCTAGCCTTATTA
Right flanking sequence: Indices 74550 -- 75049
ACATCTATTTGTCTTAATACATCTATTAACCTCATTACATCTATTTGATGCTATTCCATCATCGG
TGATTCTCTAACTTAAGAGTCTAGTAATATCAAGACATTCGGATTCTTGAATACCTCGGCTTTCA
CAGTTCCTAGTTTATTAACACAACCCCTCCCTGCCAGGTTGATTTTAGCGTCTCACTGTTCCAGT
TTCTACGGACCAGTTAAGACATTAATAACACAACAATAGTCTTATTACATCTATTAGCCTTAATC
AATTTGCCTTATTAAATCTATTAGCCTTCATCTATTAGCTTTCTTCTATTAGTCGCTTTGTCCCA
TCGATTAGCCTTAATCAATTTATTACATCTATTAGCCTTCATCTATTAGCTTTCATCTATTAGCC
TTCAACCAGTCACTTTTTCACCCCGTCGTACTTTTTCTTCCACGTCCAGTACTCCTCCAACCGCT
GGGCCCCGTACTTGCCGTAGTCAAAGTCGATGTTCAGGATCTCCA
Found at i:74556 original size:18 final size:18
Alignment explanation
Indices: 74508--74594 Score: 83
Period size: 18 Copynumber: 5.1 Consensus size: 18
74498 TTATTAAATC
* *
74508 TAGCCTTATTATATTTAT
1 TAGCCTTATTACATCTAT
74526 TAGCCTTA-T---TCTAT
1 TAGCCTTATTACATCTAT
74540 TAGCCTTATTACATCTAT
1 TAGCCTTATTACATCTAT
* * *
74558 TTGTCTTAATACATCTAT
1 TAGCCTTATTACATCTAT
* *
74576 TAACCTCATTACATCTAT
1 TAGCCTTATTACATCTAT
74594 T
1 T
74595 TGATGCTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
14 12 0.21
15 1 0.02
17 1 0.02
18 42 0.75
ACGTcount: A:0.28, C:0.20, G:0.05, T:0.48
Consensus pattern (18 bp):
TAGCCTTATTACATCTAT
Left flanking sequence: Indices 74008 -- 74507
ACTCTCTTGAAGAAGAGTCCTTCCTCCACCACAGAACACCCCGCATTCGAGTACCACCTCATCAC
CACCTGACATCAGCAGACCACGACTCTATCTCTCACAGCCAGTGACGTGTGCTCAACAATGACTC
CCGAAACCAAAGAAACACCCCACCTGGACACCTCCACGCCCCCGACCCCGCCCGCGTACCACATC
CACATCAACAAGGACAAAGAGATCCTCCTTCTCACCCAGATCGCCCACGAGCTCCAGGCGCTCCA
CTCCACCCAGCGCAAGGTCCACGCCGAGCTCCACGAACTCACCCAGCCATCCGCGCCCAAGCGGG
TGTGCTTTGCTCCCGATTGTAAGGACACCCCCAAGCCCAAGCCCGACCGCGCCTTCTACTACATG
GCCGGGATCATGCTCGTGGTGGCGGCCACTGGGTTCTTTGCGGTGTCCGGGGTGTGCTACCTCCA
CCGGATGGGGTATTAGCCTAATAGCCCTACTAGCCTTATTAAATC
Right flanking sequence: Indices 74595 -- 75094
TGATGCTATTCCATCATCGGTGATTCTCTAACTTAAGAGTCTAGTAATATCAAGACATTCGGATT
CTTGAATACCTCGGCTTTCACAGTTCCTAGTTTATTAACACAACCCCTCCCTGCCAGGTTGATTT
TAGCGTCTCACTGTTCCAGTTTCTACGGACCAGTTAAGACATTAATAACACAACAATAGTCTTAT
TACATCTATTAGCCTTAATCAATTTGCCTTATTAAATCTATTAGCCTTCATCTATTAGCTTTCTT
CTATTAGTCGCTTTGTCCCATCGATTAGCCTTAATCAATTTATTACATCTATTAGCCTTCATCTA
TTAGCTTTCATCTATTAGCCTTCAACCAGTCACTTTTTCACCCCGTCGTACTTTTTCTTCCACGT
CCAGTACTCCTCCAACCGCTGGGCCCCGTACTTGCCGTAGTCAAAGTCGATGTTCAGGATCTCCA
GCTGGATGATCGACCAGATGCCCCAGTAGAACCCAGGCAACCCGT
Found at i:74836 original size:18 final size:18
Alignment explanation
Indices: 74785--74837 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
74775 CAACAATAGT
*
74785 CTTATTACATCTATTAGC
1 CTTATTAAATCTATTAGC
* *
74803 C---TT-AATCAATTTGC
1 CTTATTAAATCTATTAGC
74817 CTTATTAAATCTATTAGC
1 CTTATTAAATCTATTAGC
74835 CTT
1 CTT
74838 CATCTATTAG
Statistics
Matches: 26, Mismatches: 5, Indels: 8
0.67 0.13 0.21
Matches are distributed among these distances:
14 9 0.35
15 2 0.08
17 2 0.08
18 13 0.50
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.45
Consensus pattern (18 bp):
CTTATTAAATCTATTAGC
Left flanking sequence: Indices 74285 -- 74784
TCCACGCCGAGCTCCACGAACTCACCCAGCCATCCGCGCCCAAGCGGGTGTGCTTTGCTCCCGAT
TGTAAGGACACCCCCAAGCCCAAGCCCGACCGCGCCTTCTACTACATGGCCGGGATCATGCTCGT
GGTGGCGGCCACTGGGTTCTTTGCGGTGTCCGGGGTGTGCTACCTCCACCGGATGGGGTATTAGC
CTAATAGCCCTACTAGCCTTATTAAATCTAGCCTTATTATATTTATTAGCCTTATTCTATTAGCC
TTATTACATCTATTTGTCTTAATACATCTATTAACCTCATTACATCTATTTGATGCTATTCCATC
ATCGGTGATTCTCTAACTTAAGAGTCTAGTAATATCAAGACATTCGGATTCTTGAATACCTCGGC
TTTCACAGTTCCTAGTTTATTAACACAACCCCTCCCTGCCAGGTTGATTTTAGCGTCTCACTGTT
CCAGTTTCTACGGACCAGTTAAGACATTAATAACACAACAATAGT
Right flanking sequence: Indices 74838 -- 75337
CATCTATTAGCTTTCTTCTATTAGTCGCTTTGTCCCATCGATTAGCCTTAATCAATTTATTACAT
CTATTAGCCTTCATCTATTAGCTTTCATCTATTAGCCTTCAACCAGTCACTTTTTCACCCCGTCG
TACTTTTTCTTCCACGTCCAGTACTCCTCCAACCGCTGGGCCCCGTACTTGCCGTAGTCAAAGTC
GATGTTCAGGATCTCCAGCTGGATGATCGACCAGATGCCCCAGTAGAACCCAGGCAACCCGTAGA
ACGCCTGGATCTCGTCAATGACCCCGTCAATCACCTCGTCCGACGCGTCGCCCTGGAGATAGCCC
CGCACAAACTGGCGCATCGTCGGATTGGTGCGCGACGGGATGGGGATGGCCTCGCGGTCGCAGTT
GAACCCCTGCCACTCGGCCAAGTGGTTGGCGATGTCGAACGCGCGCGGCGCAGGCAACATGTACT
CGTAGTCGATGAACTTGATGAGGTTGTCCTGGGGAGCCGGCAACT
Found at i:74844 original size:14 final size:14
Alignment explanation
Indices: 74825--74943 Score: 82
Period size: 14 Copynumber: 8.1 Consensus size: 14
74815 GCCTTATTAA
74825 ATCTATTAGCCTTC
1 ATCTATTAGCCTTC
*
74839 ATCTATTAGCTTTC
1 ATCTATTAGCCTTC
*
74853 TTCTATTAGTCGCTTTGTCCC
1 ATCTATTAG-C-C--T-T--C
* *
74874 ATCGATTAGCCTTA
1 ATCTATTAGCCTTC
*
74888 ATCAATTTA---TTAC
1 ATCTA-TTAGCCTT-C
74901 ATCTATTAGCCTTC
1 ATCTATTAGCCTTC
*
74915 ATCTATTAGCTTTC
1 ATCTATTAGCCTTC
74929 ATCTATTAGCCTTC
1 ATCTATTAGCCTTC
74943 A
1 A
74944 ACCAGTCACT
Statistics
Matches: 82, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
12 5 0.06
13 4 0.05
14 53 0.65
15 6 0.07
16 1 0.01
17 1 0.01
18 1 0.01
19 2 0.02
20 1 0.01
21 8 0.10
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.45
Consensus pattern (14 bp):
ATCTATTAGCCTTC
Left flanking sequence: Indices 74325 -- 74824
CAAGCGGGTGTGCTTTGCTCCCGATTGTAAGGACACCCCCAAGCCCAAGCCCGACCGCGCCTTCT
ACTACATGGCCGGGATCATGCTCGTGGTGGCGGCCACTGGGTTCTTTGCGGTGTCCGGGGTGTGC
TACCTCCACCGGATGGGGTATTAGCCTAATAGCCCTACTAGCCTTATTAAATCTAGCCTTATTAT
ATTTATTAGCCTTATTCTATTAGCCTTATTACATCTATTTGTCTTAATACATCTATTAACCTCAT
TACATCTATTTGATGCTATTCCATCATCGGTGATTCTCTAACTTAAGAGTCTAGTAATATCAAGA
CATTCGGATTCTTGAATACCTCGGCTTTCACAGTTCCTAGTTTATTAACACAACCCCTCCCTGCC
AGGTTGATTTTAGCGTCTCACTGTTCCAGTTTCTACGGACCAGTTAAGACATTAATAACACAACA
ATAGTCTTATTACATCTATTAGCCTTAATCAATTTGCCTTATTAA
Right flanking sequence: Indices 74944 -- 75443
ACCAGTCACTTTTTCACCCCGTCGTACTTTTTCTTCCACGTCCAGTACTCCTCCAACCGCTGGGC
CCCGTACTTGCCGTAGTCAAAGTCGATGTTCAGGATCTCCAGCTGGATGATCGACCAGATGCCCC
AGTAGAACCCAGGCAACCCGTAGAACGCCTGGATCTCGTCAATGACCCCGTCAATCACCTCGTCC
GACGCGTCGCCCTGGAGATAGCCCCGCACAAACTGGCGCATCGTCGGATTGGTGCGCGACGGGAT
GGGGATGGCCTCGCGGTCGCAGTTGAACCCCTGCCACTCGGCCAAGTGGTTGGCGATGTCGAACG
CGCGCGGCGCAGGCAACATGTACTCGTAGTCGATGAACTTGATGAGGTTGTCCTGGGGAGCCGGC
AACTCGGTGAGCTCAGAAGTGACGTCATAGTCCTCGGGCACAATCACGTTGCCCAGCAAGAGGTC
GCAGTGGCACAGCACCACGGGCGAGCTGGTGGTCTGGAGAAAGTC
Found at i:74911 original size:27 final size:27
Alignment explanation
Indices: 74873--74941 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
74863 CGCTTTGTCC
*
74873 CATCGATTAGCCTTAATCAATTTA-TTA
1 CATCTATTAGCCTTAATCAA-TTACTTA
* * *
74900 CATCTATTAGCCTTCATCTATTAGCTTT
1 CATCTATTAGCCTTAATCAATTA-CTTA
74928 CATCTATTAGCCTT
1 CATCTATTAGCCTT
74942 CAACCAGTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.08
27 17 0.47
28 16 0.44
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.43
Consensus pattern (27 bp):
CATCTATTAGCCTTAATCAATTACTTA
Left flanking sequence: Indices 74373 -- 74872
GCCCGACCGCGCCTTCTACTACATGGCCGGGATCATGCTCGTGGTGGCGGCCACTGGGTTCTTTG
CGGTGTCCGGGGTGTGCTACCTCCACCGGATGGGGTATTAGCCTAATAGCCCTACTAGCCTTATT
AAATCTAGCCTTATTATATTTATTAGCCTTATTCTATTAGCCTTATTACATCTATTTGTCTTAAT
ACATCTATTAACCTCATTACATCTATTTGATGCTATTCCATCATCGGTGATTCTCTAACTTAAGA
GTCTAGTAATATCAAGACATTCGGATTCTTGAATACCTCGGCTTTCACAGTTCCTAGTTTATTAA
CACAACCCCTCCCTGCCAGGTTGATTTTAGCGTCTCACTGTTCCAGTTTCTACGGACCAGTTAAG
ACATTAATAACACAACAATAGTCTTATTACATCTATTAGCCTTAATCAATTTGCCTTATTAAATC
TATTAGCCTTCATCTATTAGCTTTCTTCTATTAGTCGCTTTGTCC
Right flanking sequence: Indices 74942 -- 75441
CAACCAGTCACTTTTTCACCCCGTCGTACTTTTTCTTCCACGTCCAGTACTCCTCCAACCGCTGG
GCCCCGTACTTGCCGTAGTCAAAGTCGATGTTCAGGATCTCCAGCTGGATGATCGACCAGATGCC
CCAGTAGAACCCAGGCAACCCGTAGAACGCCTGGATCTCGTCAATGACCCCGTCAATCACCTCGT
CCGACGCGTCGCCCTGGAGATAGCCCCGCACAAACTGGCGCATCGTCGGATTGGTGCGCGACGGG
ATGGGGATGGCCTCGCGGTCGCAGTTGAACCCCTGCCACTCGGCCAAGTGGTTGGCGATGTCGAA
CGCGCGCGGCGCAGGCAACATGTACTCGTAGTCGATGAACTTGATGAGGTTGTCCTGGGGAGCCG
GCAACTCGGTGAGCTCAGAAGTGACGTCATAGTCCTCGGGCACAATCACGTTGCCCAGCAAGAGG
TCGCAGTGGCACAGCACCACGGGCGAGCTGGTGGTCTGGAGAAAG
Found at i:74955 original size:28 final size:28
Alignment explanation
Indices: 74900--74955 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
74890 CAATTTATTA
* * *
74900 CATCTATTAGCCTTCATCTATTAGCTTT
1 CATCTATTAGCCTTCAACCATCAGCTTT
74928 CATCTATTAGCCTTCAACCAGTCA-CTTT
1 CATCTATTAGCCTTCAACCA-TCAGCTTT
74956 TTCACCCCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.23, C:0.29, G:0.07, T:0.41
Consensus pattern (28 bp):
CATCTATTAGCCTTCAACCATCAGCTTT
Left flanking sequence: Indices 74400 -- 74899
CGGGATCATGCTCGTGGTGGCGGCCACTGGGTTCTTTGCGGTGTCCGGGGTGTGCTACCTCCACC
GGATGGGGTATTAGCCTAATAGCCCTACTAGCCTTATTAAATCTAGCCTTATTATATTTATTAGC
CTTATTCTATTAGCCTTATTACATCTATTTGTCTTAATACATCTATTAACCTCATTACATCTATT
TGATGCTATTCCATCATCGGTGATTCTCTAACTTAAGAGTCTAGTAATATCAAGACATTCGGATT
CTTGAATACCTCGGCTTTCACAGTTCCTAGTTTATTAACACAACCCCTCCCTGCCAGGTTGATTT
TAGCGTCTCACTGTTCCAGTTTCTACGGACCAGTTAAGACATTAATAACACAACAATAGTCTTAT
TACATCTATTAGCCTTAATCAATTTGCCTTATTAAATCTATTAGCCTTCATCTATTAGCTTTCTT
CTATTAGTCGCTTTGTCCCATCGATTAGCCTTAATCAATTTATTA
Right flanking sequence: Indices 74956 -- 75455
TTCACCCCGTCGTACTTTTTCTTCCACGTCCAGTACTCCTCCAACCGCTGGGCCCCGTACTTGCC
GTAGTCAAAGTCGATGTTCAGGATCTCCAGCTGGATGATCGACCAGATGCCCCAGTAGAACCCAG
GCAACCCGTAGAACGCCTGGATCTCGTCAATGACCCCGTCAATCACCTCGTCCGACGCGTCGCCC
TGGAGATAGCCCCGCACAAACTGGCGCATCGTCGGATTGGTGCGCGACGGGATGGGGATGGCCTC
GCGGTCGCAGTTGAACCCCTGCCACTCGGCCAAGTGGTTGGCGATGTCGAACGCGCGCGGCGCAG
GCAACATGTACTCGTAGTCGATGAACTTGATGAGGTTGTCCTGGGGAGCCGGCAACTCGGTGAGC
TCAGAAGTGACGTCATAGTCCTCGGGCACAATCACGTTGCCCAGCAAGAGGTCGCAGTGGCACAG
CACCACGGGCGAGCTGGTGGTCTGGAGAAAGTCCCGCAACCACGC
Found at i:77077 original size:11 final size:11
Alignment explanation
Indices: 77063--77092 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
77053 ATTGGTGCTG
77063 GGTGGGTGTAA
1 GGTGGGTGTAA
77074 GGTGGGTGTAA
1 GGTGGGTGTAA
*
77085 AGTGGGTG
1 GGTGGGTG
77093 CTGAATATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.57, T:0.27
Consensus pattern (11 bp):
GGTGGGTGTAA
Left flanking sequence: Indices 76563 -- 77062
AAAGGTGTCCTTTTCTGCACTCCAGGGAGGCTAGCCGCACGCGACCGTAGGCAGAGCAACCGAGG
TGGGCGTGGTGGTGGCAGTGGCGGTGGGTGGTGGGGGGCACAGAGGCGGGGTTGCCGAGGGGTCG
CGGGAGGCGGGGCAGAGAGTGAGAGAGGAGGGTTTGGAGGAGGGTCAGAGGAGGCATTGTTGACT
CGGTCATGTGTTTACGGGGCTCATTGTCATCGTCTCGGCGATAAGCAATAATGGACCGTTCCCCA
CAGATCGAGCAACCAGGAGTATCTCCGCCAGCGTCGCACGCAGATTATACGACGGGTGCCGTTGG
CCCGCAGGAAGGTCGCGAGGAAGGTGAGCCCTGGGGTCACGGGAGTAGTGATGTGGGTGTGGTGA
GTGGAAGAGGGGTGGAGAGTGGTTGTAGGGGTGGAGAGTTGGTTTAAAGTCGGTTTAAAGGATGT
AGAGTGGGTGGAGAATGGGTATAAGTTAAGTGTAAATTGGTGCTG
Right flanking sequence: Indices 77093 -- 77592
CTGAATATGTGTAAGGGGTGTGTTGCATTGTGTTAGCAAATGCGATAGAGTAAATTTGATGAGGC
AGCCGGGAGCAGTAGCGATGCGGAGTATTGTGGTGGGCTACAGCGTGTTTGTGGACGGACTTGCA
CAGGTGGCCAGCATTGGTATGAATACCACGATCATCTCGCTTAGGTATCCCCTGAAACAGTCACC
ATCGGCGTATGCACTATTGATTCAGCTAACAGGACATAAAAGTGTAGATACCCTAACCAACCGAT
GTATTCTGCTTGGTCAACAAAACATGCTCTCCTCCACCCGTCACATGTCGTATATCCTAATCCAG
CCAGGGCTTAGCCCATCATCTCGACTTCCACCTTTATAGCCGATACTACCGCCTCTCTTGTCCTA
CCATCTCTGCCACTATCGCCATTTTCACACTACCACTACCATCACCTTAACAACCACATTACAAT
CACCTTAACATAACCACATCACCATGACACTACCATCACACAACC
Found at i:77588 original size:11 final size:11
Alignment explanation
Indices: 77568--77628 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
77558 TAACCACATC
*
77568 ACCATGACACT
1 ACCATCACACT
*
77579 ACCATCACACA
1 ACCATCACACT
*
77590 ACCATAACACT
1 ACCATCACACT
* *
77601 ACC-TCACGCA
1 ACCATCACACT
*
77611 ACCATAACACT
1 ACCATCACACT
77622 A-CATCAC
1 ACCATCAC
77629 TCAACCACAC
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
10 12 0.32
11 26 0.68
ACGTcount: A:0.41, C:0.41, G:0.03, T:0.15
Consensus pattern (11 bp):
ACCATCACACT
Left flanking sequence: Indices 77068 -- 77567
GTGTAAGGTGGGTGTAAAGTGGGTGCTGAATATGTGTAAGGGGTGTGTTGCATTGTGTTAGCAAA
TGCGATAGAGTAAATTTGATGAGGCAGCCGGGAGCAGTAGCGATGCGGAGTATTGTGGTGGGCTA
CAGCGTGTTTGTGGACGGACTTGCACAGGTGGCCAGCATTGGTATGAATACCACGATCATCTCGC
TTAGGTATCCCCTGAAACAGTCACCATCGGCGTATGCACTATTGATTCAGCTAACAGGACATAAA
AGTGTAGATACCCTAACCAACCGATGTATTCTGCTTGGTCAACAAAACATGCTCTCCTCCACCCG
TCACATGTCGTATATCCTAATCCAGCCAGGGCTTAGCCCATCATCTCGACTTCCACCTTTATAGC
CGATACTACCGCCTCTCTTGTCCTACCATCTCTGCCACTATCGCCATTTTCACACTACCACTACC
ATCACCTTAACAACCACATTACAATCACCTTAACATAACCACATC
Right flanking sequence: Indices 77629 -- 78128
TCAACCACACTACCATCGCAATACCATAACGACACACCTAACCACACCACCTGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNAGGTGGAAAGACGTTTGGTTGG
GCTCTGTTGATTTTATGGCGTTTCCGTGCCCTGGCATGGCCACAGGTGGACCTTGTAACAACTGC
TTCGGAAATAGTGAGCTCGTTATACCACCACTACCACTGCCATCTACCACTACCACCCACACCAC
TACCACCAGAGTCACCACCACCCACACCACTACCACCACTACCCCCTAAAAAGAGTTCAACTTCA
ACTACGAGCTTTTTAACTGCAACAACCTCAATATACGCTTTTGGAGCTCAATACACCCTTTTGCT
CAATACACCCTTTTGCTCAATACACCTTTTGAGCTGCCACCACTACCACCACCACCCTTCTTTGT
TCACCACCCTATGTCTTACCTTTCTTACTATATACATGCTATTTA
Found at i:77612 original size:21 final size:21
Alignment explanation
Indices: 77568--77635 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
77558 TAACCACATC
*
77568 ACCATGACACTACCATCACACA
1 ACCATAACACTACC-TCACACA
*
77590 ACCATAACACTACCTCACGCA
1 ACCATAACACTACCTCACACA
* *
77611 ACCATAACACTACATCACTCA
1 ACCATAACACTACCTCACACA
77632 ACCA
1 ACCA
77636 CACTACCATC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 29 0.69
22 13 0.31
ACGTcount: A:0.41, C:0.41, G:0.03, T:0.15
Consensus pattern (21 bp):
ACCATAACACTACCTCACACA
Left flanking sequence: Indices 77068 -- 77567
GTGTAAGGTGGGTGTAAAGTGGGTGCTGAATATGTGTAAGGGGTGTGTTGCATTGTGTTAGCAAA
TGCGATAGAGTAAATTTGATGAGGCAGCCGGGAGCAGTAGCGATGCGGAGTATTGTGGTGGGCTA
CAGCGTGTTTGTGGACGGACTTGCACAGGTGGCCAGCATTGGTATGAATACCACGATCATCTCGC
TTAGGTATCCCCTGAAACAGTCACCATCGGCGTATGCACTATTGATTCAGCTAACAGGACATAAA
AGTGTAGATACCCTAACCAACCGATGTATTCTGCTTGGTCAACAAAACATGCTCTCCTCCACCCG
TCACATGTCGTATATCCTAATCCAGCCAGGGCTTAGCCCATCATCTCGACTTCCACCTTTATAGC
CGATACTACCGCCTCTCTTGTCCTACCATCTCTGCCACTATCGCCATTTTCACACTACCACTACC
ATCACCTTAACAACCACATTACAATCACCTTAACATAACCACATC
Right flanking sequence: Indices 77636 -- 78135
CACTACCATCGCAATACCATAACGACACACCTAACCACACCACCTGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNAGGTGGAAAGACGTTTGGTTGGGCTCTGT
TGATTTTATGGCGTTTCCGTGCCCTGGCATGGCCACAGGTGGACCTTGTAACAACTGCTTCGGAA
ATAGTGAGCTCGTTATACCACCACTACCACTGCCATCTACCACTACCACCCACACCACTACCACC
AGAGTCACCACCACCCACACCACTACCACCACTACCCCCTAAAAAGAGTTCAACTTCAACTACGA
GCTTTTTAACTGCAACAACCTCAATATACGCTTTTGGAGCTCAATACACCCTTTTGCTCAATACA
CCCTTTTGCTCAATACACCTTTTGAGCTGCCACCACTACCACCACCACCCTTCTTTGTTCACCAC
CCTATGTCTTACCTTTCTTACTATATACATGCTATTTACACCACA
Found at i:77687 original size:1 final size:1
Alignment explanation
Indices: 77681--77735 Score: 110
Period size: 1 Copynumber: 55.0 Consensus size: 1
77671 CACACCACCT
77681 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
77736 NAGGTGGAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 77181 -- 77680
AGTATTGTGGTGGGCTACAGCGTGTTTGTGGACGGACTTGCACAGGTGGCCAGCATTGGTATGAA
TACCACGATCATCTCGCTTAGGTATCCCCTGAAACAGTCACCATCGGCGTATGCACTATTGATTC
AGCTAACAGGACATAAAAGTGTAGATACCCTAACCAACCGATGTATTCTGCTTGGTCAACAAAAC
ATGCTCTCCTCCACCCGTCACATGTCGTATATCCTAATCCAGCCAGGGCTTAGCCCATCATCTCG
ACTTCCACCTTTATAGCCGATACTACCGCCTCTCTTGTCCTACCATCTCTGCCACTATCGCCATT
TTCACACTACCACTACCATCACCTTAACAACCACATTACAATCACCTTAACATAACCACATCACC
ATGACACTACCATCACACAACCATAACACTACCTCACGCAACCATAACACTACATCACTCAACCA
CACTACCATCGCAATACCATAACGACACACCTAACCACACCACCT
Right flanking sequence: Indices 77736 -- 78235
NAGGTGGAAAGACGTTTGGTTGGGCTCTGTTGATTTTATGGCGTTTCCGTGCCCTGGCATGGCCA
CAGGTGGACCTTGTAACAACTGCTTCGGAAATAGTGAGCTCGTTATACCACCACTACCACTGCCA
TCTACCACTACCACCCACACCACTACCACCAGAGTCACCACCACCCACACCACTACCACCACTAC
CCCCTAAAAAGAGTTCAACTTCAACTACGAGCTTTTTAACTGCAACAACCTCAATATACGCTTTT
GGAGCTCAATACACCCTTTTGCTCAATACACCCTTTTGCTCAATACACCTTTTGAGCTGCCACCA
CTACCACCACCACCCTTCTTTGTTCACCACCCTATGTCTTACCTTTCTTACTATATACATGCTAT
TTACACCACAAACAACCGCTTGTTGACCACGTCCCAGTTGATACACTTCCACACCTTCTCCAAGA
ACTCGCGCTTGCCGTTGACCCCGTAGTCGTGGACAAACAGTTGGT
Found at i:77861 original size:6 final size:6
Alignment explanation
Indices: 77850--77894 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
77840 TCGTTATACC
*
77850 ACCACT ACCACT GCCATCT ACCACT ACCAC- -CCAC- ACCACT ACCAC
1 ACCACT ACCACT ACCA-CT ACCACT ACCACT ACCACT ACCACT ACCAC
77895 CAGAGTCACC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 4 0.12
5 4 0.12
6 21 0.62
7 5 0.15
ACGTcount: A:0.31, C:0.53, G:0.02, T:0.13
Consensus pattern (6 bp):
ACCACT
Left flanking sequence: Indices 77350 -- 77849
GATGTATTCTGCTTGGTCAACAAAACATGCTCTCCTCCACCCGTCACATGTCGTATATCCTAATC
CAGCCAGGGCTTAGCCCATCATCTCGACTTCCACCTTTATAGCCGATACTACCGCCTCTCTTGTC
CTACCATCTCTGCCACTATCGCCATTTTCACACTACCACTACCATCACCTTAACAACCACATTAC
AATCACCTTAACATAACCACATCACCATGACACTACCATCACACAACCATAACACTACCTCACGC
AACCATAACACTACATCACTCAACCACACTACCATCGCAATACCATAACGACACACCTAACCACA
CCACCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNAGG
TGGAAAGACGTTTGGTTGGGCTCTGTTGATTTTATGGCGTTTCCGTGCCCTGGCATGGCCACAGG
TGGACCTTGTAACAACTGCTTCGGAAATAGTGAGCTCGTTATACC
Right flanking sequence: Indices 77895 -- 78394
CAGAGTCACCACCACCCACACCACTACCACCACTACCCCCTAAAAAGAGTTCAACTTCAACTACG
AGCTTTTTAACTGCAACAACCTCAATATACGCTTTTGGAGCTCAATACACCCTTTTGCTCAATAC
ACCCTTTTGCTCAATACACCTTTTGAGCTGCCACCACTACCACCACCACCCTTCTTTGTTCACCA
CCCTATGTCTTACCTTTCTTACTATATACATGCTATTTACACCACAAACAACCGCTTGTTGACCA
CGTCCCAGTTGATACACTTCCACACCTTCTCCAAGAACTCGCGCTTGCCGTTGACCCCGTAGTCG
TGGACAAACAGTTGGTCCCAGCTCAGCATCCCCAACAACGGCAACGTGAAGTCCTTCTCCGAGTC
GGCCGCGGCGCGCTTGACCGCCTCCAACCGCTCGTACAGCAGCTGGTCGACGCCCCCGTTGAAGT
CCAACAGCTGGTTCTTGCCGTAGTAGTAGGGGGTCCCGTCCACGT
Found at i:77889 original size:15 final size:15
Alignment explanation
Indices: 77849--77925 Score: 75
Period size: 15 Copynumber: 4.9 Consensus size: 15
77839 CTCGTTATAC
77849 CACCACTACCACTGCCA
1 CACCACTACCAC--CCA
77866 TCTACCACTACCACCCA
1 -C-ACCACTACCACCCA
77883 CACCACTACCA-CCA
1 CACCACTACCACCCA
* * *
77897 GAGTCACCACCACCCA
1 CA-CCACTACCACCCA
77913 CACCACTACCACC
1 CACCACTACCACC
77926 ACTACCCCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
14 4 0.08
15 26 0.52
16 5 0.10
17 3 0.06
18 1 0.02
19 11 0.22
ACGTcount: A:0.31, C:0.55, G:0.04, T:0.10
Consensus pattern (15 bp):
CACCACTACCACCCA
Left flanking sequence: Indices 77349 -- 77848
CGATGTATTCTGCTTGGTCAACAAAACATGCTCTCCTCCACCCGTCACATGTCGTATATCCTAAT
CCAGCCAGGGCTTAGCCCATCATCTCGACTTCCACCTTTATAGCCGATACTACCGCCTCTCTTGT
CCTACCATCTCTGCCACTATCGCCATTTTCACACTACCACTACCATCACCTTAACAACCACATTA
CAATCACCTTAACATAACCACATCACCATGACACTACCATCACACAACCATAACACTACCTCACG
CAACCATAACACTACATCACTCAACCACACTACCATCGCAATACCATAACGACACACCTAACCAC
ACCACCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNAG
GTGGAAAGACGTTTGGTTGGGCTCTGTTGATTTTATGGCGTTTCCGTGCCCTGGCATGGCCACAG
GTGGACCTTGTAACAACTGCTTCGGAAATAGTGAGCTCGTTATAC
Right flanking sequence: Indices 77926 -- 78425
ACTACCCCCTAAAAAGAGTTCAACTTCAACTACGAGCTTTTTAACTGCAACAACCTCAATATACG
CTTTTGGAGCTCAATACACCCTTTTGCTCAATACACCCTTTTGCTCAATACACCTTTTGAGCTGC
CACCACTACCACCACCACCCTTCTTTGTTCACCACCCTATGTCTTACCTTTCTTACTATATACAT
GCTATTTACACCACAAACAACCGCTTGTTGACCACGTCCCAGTTGATACACTTCCACACCTTCTC
CAAGAACTCGCGCTTGCCGTTGACCCCGTAGTCGTGGACAAACAGTTGGTCCCAGCTCAGCATCC
CCAACAACGGCAACGTGAAGTCCTTCTCCGAGTCGGCCGCGGCGCGCTTGACCGCCTCCAACCGC
TCGTACAGCAGCTGGTCGACGCCCCCGTTGAAGTCCAACAGCTGGTTCTTGCCGTAGTAGTAGGG
GGTCCCGTCCACGTTGCACCGGACCACCTCCAACAGCTTGTCGGC
Found at i:78048 original size:16 final size:17
Alignment explanation
Indices: 77999--78049 Score: 95
Period size: 17 Copynumber: 3.1 Consensus size: 17
77989 CGCTTTTGGA
77999 GCTCAATACACCCTTTT
1 GCTCAATACACCCTTTT
78016 GCTCAATACACCCTTTT
1 GCTCAATACACCCTTTT
78033 GCTCAATACA-CCTTTT
1 GCTCAATACACCCTTTT
78049 G
1 G
78050 AGCTGCCACC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 7 0.21
17 27 0.79
ACGTcount: A:0.24, C:0.33, G:0.08, T:0.35
Consensus pattern (17 bp):
GCTCAATACACCCTTTT
Left flanking sequence: Indices 77499 -- 77998
CGCCATTTTCACACTACCACTACCATCACCTTAACAACCACATTACAATCACCTTAACATAACCA
CATCACCATGACACTACCATCACACAACCATAACACTACCTCACGCAACCATAACACTACATCAC
TCAACCACACTACCATCGCAATACCATAACGACACACCTAACCACACCACCTGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNAGGTGGAAAGACGTTTGGTTGG
GCTCTGTTGATTTTATGGCGTTTCCGTGCCCTGGCATGGCCACAGGTGGACCTTGTAACAACTGC
TTCGGAAATAGTGAGCTCGTTATACCACCACTACCACTGCCATCTACCACTACCACCCACACCAC
TACCACCAGAGTCACCACCACCCACACCACTACCACCACTACCCCCTAAAAAGAGTTCAACTTCA
ACTACGAGCTTTTTAACTGCAACAACCTCAATATACGCTTTTGGA
Right flanking sequence: Indices 78050 -- 78549
AGCTGCCACCACTACCACCACCACCCTTCTTTGTTCACCACCCTATGTCTTACCTTTCTTACTAT
ATACATGCTATTTACACCACAAACAACCGCTTGTTGACCACGTCCCAGTTGATACACTTCCACAC
CTTCTCCAAGAACTCGCGCTTGCCGTTGACCCCGTAGTCGTGGACAAACAGTTGGTCCCAGCTCA
GCATCCCCAACAACGGCAACGTGAAGTCCTTCTCCGAGTCGGCCGCGGCGCGCTTGACCGCCTCC
AACCGCTCGTACAGCAGCTGGTCGACGCCCCCGTTGAAGTCCAACAGCTGGTTCTTGCCGTAGTA
GTAGGGGGTCCCGTCCACGTTGCACCGGACCACCTCCAACAGCTTGTCGGCCCGCTCGACCAAAA
ACACCCACCCGGGGCCCAGCGCGGCCTCGGCCATCTCGATCATCCGGTCGCGCAACGCCTCCACC
AGCTTGAGCCCGTGGTGGGCCAACTTCTCCGTCAACTGGCGCATG
Found at i:78992 original size:17 final size:18
Alignment explanation
Indices: 78960--78997 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
78950 TGGTAGTGAT
78960 GTGGTGTGAAGGGTGGTG
1 GTGGTGTGAAGGGTGGTG
*
78978 GTGGTGTG-GGGGTGGTG
1 GTGGTGTGAAGGGTGGTG
78995 GTG
1 GTG
78998 ATGTTGGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.05, C:0.00, G:0.66, T:0.29
Consensus pattern (18 bp):
GTGGTGTGAAGGGTGGTG
Left flanking sequence: Indices 78460 -- 78959
GCGGCCTCGGCCATCTCGATCATCCGGTCGCGCAACGCCTCCACCAGCTTGAGCCCGTGGTGGGC
CAACTTCTCCGTCAACTGGCGCATGGGCCGCGTGGTCTTGGCCACGTCCTCGGGGGCCAACTGCT
CGAAGAAAAAGTGGTTGTTGTGGGCCTGGGACGCGTAGTGGAACACGTGCTGCTGGGTGGTCTGC
TTCGCTGTCTTGAGCAAGATCTGGTACGGGGTGCGCACCTCGTTCTCGGTGCCCATCGTCGCCAT
CGTCAACTGGGTGGTGAGATACTGCTGGTAGTCGGTCCACGCCAGCTGGAACCCGGCGGCCAGGT
AGAGCCCGGGGATGCCCGCCGCTTCGAACTGCTTGGCCTGGCCTAACCGCGGCACCACGTGGATG
CCTCTTCTGAACACCAGTTGCATTTTGGATGGTATGAAGAAAAGTGAAAAATTTGAGCCGCACCG
GGAATAGGTTGGTGAGGAAAGGAGAAGGAAGGGTGTGGTAGTGAT
Right flanking sequence: Indices 78998 -- 79497
ATGTTGGTGTGTGTGTTGGGTCTATTTAGTGGTAGTGGTGGTTGTGTTGGCAGTGGTGTTGGTGG
TTGTGTAGGTGGTGAATATTTGGGTGAGGTAGTGAAGGTGGGATCATAGTGGTGATGGTGGAACG
AATAGAGTAACGAAAAGGGAGTAGTTGAGATGAAAACATGTGGATATTGGCTGGACCCTGTTTTT
TGCTGTGGTTCTCGTCGTCTAATGCTGCATCAGGTATGCACAAGTTTCAAGTGGATGGTCACGCT
AGGAATGGTGGTTGGGATGTGGAAGCAGTGGAAGAAAGAGTGAAGGGGGTTAAGGGATGGGTGAT
TGTAGCTACGGGTCTACTTTTGTTTCTTGGTTGTACAAATGCTGGTAATCTTGGTGTAGATCACG
GTTCAATGGATTGATCTGTGAATTGAGAAAAGAGATAAAATTAGAAGCAGAGCCGAGTGCGGTAG
CTGACATAAGTGGGAATGTACTGGACCTTCTTCTGGACCTCCTTC
Found at i:79068 original size:12 final size:12
Alignment explanation
Indices: 79033--79075 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
79023 TTAGTGGTAG
79033 TGGTGGTTGTGT
1 TGGTGGTTGTGT
** *
79045 TGGCAGTGGTGT
1 TGGTGGTTGTGT
79057 TGGTGGTTGTGT
1 TGGTGGTTGTGT
*
79069 AGGTGGT
1 TGGTGGT
79076 GAATATTTGG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.02, G:0.51, T:0.42
Consensus pattern (12 bp):
TGGTGGTTGTGT
Left flanking sequence: Indices 78533 -- 79032
CCGTCAACTGGCGCATGGGCCGCGTGGTCTTGGCCACGTCCTCGGGGGCCAACTGCTCGAAGAAA
AAGTGGTTGTTGTGGGCCTGGGACGCGTAGTGGAACACGTGCTGCTGGGTGGTCTGCTTCGCTGT
CTTGAGCAAGATCTGGTACGGGGTGCGCACCTCGTTCTCGGTGCCCATCGTCGCCATCGTCAACT
GGGTGGTGAGATACTGCTGGTAGTCGGTCCACGCCAGCTGGAACCCGGCGGCCAGGTAGAGCCCG
GGGATGCCCGCCGCTTCGAACTGCTTGGCCTGGCCTAACCGCGGCACCACGTGGATGCCTCTTCT
GAACACCAGTTGCATTTTGGATGGTATGAAGAAAAGTGAAAAATTTGAGCCGCACCGGGAATAGG
TTGGTGAGGAAAGGAGAAGGAAGGGTGTGGTAGTGATGTGGTGTGAAGGGTGGTGGTGGTGTGGG
GGTGGTGGTGATGTTGGTGTGTGTGTTGGGTCTATTTAGTGGTAG
Right flanking sequence: Indices 79076 -- 79575
GAATATTTGGGTGAGGTAGTGAAGGTGGGATCATAGTGGTGATGGTGGAACGAATAGAGTAACGA
AAAGGGAGTAGTTGAGATGAAAACATGTGGATATTGGCTGGACCCTGTTTTTTGCTGTGGTTCTC
GTCGTCTAATGCTGCATCAGGTATGCACAAGTTTCAAGTGGATGGTCACGCTAGGAATGGTGGTT
GGGATGTGGAAGCAGTGGAAGAAAGAGTGAAGGGGGTTAAGGGATGGGTGATTGTAGCTACGGGT
CTACTTTTGTTTCTTGGTTGTACAAATGCTGGTAATCTTGGTGTAGATCACGGTTCAATGGATTG
ATCTGTGAATTGAGAAAAGAGATAAAATTAGAAGCAGAGCCGAGTGCGGTAGCTGACATAAGTGG
GAATGTACTGGACCTTCTTCTGGACCTCCTTCTGGACACCTGCTTCGTGTTCGTCTAGTCCCAAA
ACGAACAGGTGGGATGATGTTTCCTAATCGAGACCTGCGTCGTCT
Found at i:79490 original size:12 final size:12
Alignment explanation
Indices: 79473--79502 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
79463 TGGGAATGTA
*
79473 CTGGACCTTCTT
1 CTGGACCTCCTT
79485 CTGGACCTCCTT
1 CTGGACCTCCTT
79497 CTGGAC
1 CTGGAC
79503 ACCTGCTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.37, G:0.20, T:0.33
Consensus pattern (12 bp):
CTGGACCTCCTT
Left flanking sequence: Indices 78973 -- 79472
TGGTGGTGGTGTGGGGGTGGTGGTGATGTTGGTGTGTGTGTTGGGTCTATTTAGTGGTAGTGGTG
GTTGTGTTGGCAGTGGTGTTGGTGGTTGTGTAGGTGGTGAATATTTGGGTGAGGTAGTGAAGGTG
GGATCATAGTGGTGATGGTGGAACGAATAGAGTAACGAAAAGGGAGTAGTTGAGATGAAAACATG
TGGATATTGGCTGGACCCTGTTTTTTGCTGTGGTTCTCGTCGTCTAATGCTGCATCAGGTATGCA
CAAGTTTCAAGTGGATGGTCACGCTAGGAATGGTGGTTGGGATGTGGAAGCAGTGGAAGAAAGAG
TGAAGGGGGTTAAGGGATGGGTGATTGTAGCTACGGGTCTACTTTTGTTTCTTGGTTGTACAAAT
GCTGGTAATCTTGGTGTAGATCACGGTTCAATGGATTGATCTGTGAATTGAGAAAAGAGATAAAA
TTAGAAGCAGAGCCGAGTGCGGTAGCTGACATAAGTGGGAATGTA
Right flanking sequence: Indices 79503 -- 80002
ACCTGCTTCGTGTTCGTCTAGTCCCAAAACGAACAGGTGGGATGATGTTTCCTAATCGAGACCTG
CGTCGTCTACCCAACCAACAACTATAAATAAGTGCACTTCGTCGAAATGACTTCGTCGAACCGTC
GAACGTGACCTGTCCGTCTCAATTGCATCCCTCGTGGCTAGACATTGGTTTTGATGAGAAAGCCT
ATGCTACGAATGTCATCCAGACTAGCTACTAGTCACGAGTCTCATCCACACGCCATTAGCCACTC
GTCCCATTCAACTACGCTCAACCGATCAACCGTTGACTATATTTGAATTTCATCACCCACCTATT
CACATATTTCTCTCCACTTCTCACTTTTCACCACTTCTCACTTCTCTCCACCTACTTCTCTTCTC
TTCTTTCTCACTTCCTTCGCGTCGCGAAAAACGCGTCTCGCGGTCCATCAACCACCACCAAGCAC
AACCACCCCACTACCCACCAATTCCCTTACACCACCACACCACTA
Found at i:79878 original size:17 final size:17
Alignment explanation
Indices: 79835--79878 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
79825 ATTCACATAT
79835 TTCTCTCCACTTCTCAC
1 TTCTCTCCACTTCTCAC
* *
79852 TTTTCACCACTTCTCAC
1 TTCTCTCCACTTCTCAC
79869 TTCTCTCCAC
1 TTCTCTCCAC
79879 CTACTTCTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.41
Consensus pattern (17 bp):
TTCTCTCCACTTCTCAC
Left flanking sequence: Indices 79335 -- 79834
TCTACTTTTGTTTCTTGGTTGTACAAATGCTGGTAATCTTGGTGTAGATCACGGTTCAATGGATT
GATCTGTGAATTGAGAAAAGAGATAAAATTAGAAGCAGAGCCGAGTGCGGTAGCTGACATAAGTG
GGAATGTACTGGACCTTCTTCTGGACCTCCTTCTGGACACCTGCTTCGTGTTCGTCTAGTCCCAA
AACGAACAGGTGGGATGATGTTTCCTAATCGAGACCTGCGTCGTCTACCCAACCAACAACTATAA
ATAAGTGCACTTCGTCGAAATGACTTCGTCGAACCGTCGAACGTGACCTGTCCGTCTCAATTGCA
TCCCTCGTGGCTAGACATTGGTTTTGATGAGAAAGCCTATGCTACGAATGTCATCCAGACTAGCT
ACTAGTCACGAGTCTCATCCACACGCCATTAGCCACTCGTCCCATTCAACTACGCTCAACCGATC
AACCGTTGACTATATTTGAATTTCATCACCCACCTATTCACATAT
Right flanking sequence: Indices 79879 -- 80378
CTACTTCTCTTCTCTTCTTTCTCACTTCCTTCGCGTCGCGAAAAACGCGTCTCGCGGTCCATCAA
CCACCACCAAGCACAACCACCCCACTACCCACCAATTCCCTTACACCACCACACCACTACACCAC
ACCACACCACACCACACCACATCATGTCCTCATACGAGACCCAGAAACTCCAGCACACCCCGTGG
GTGGAAAAGTACCGCCCGAAAACCCTCGACCTGGTGTCCTCCCAGGACCACACGGTGTCTGTGCT
CAAAAAAACCGTGTCCCTGGGCAACCTCCCGCACATGTTGTTCTACGGGCCCCCGGGCACCGGAA
AGACCTCCACCGTGTTGGCCCTCGCCAAGCAGTTGTACGGCCCGCACCTCTACCGGCTGCGGGTG
CTCGAGCTCAACGCGTCCGACGAGCGCGGCATCTCGATCGTCCGCCAGAAAATCAAGAACTTTGC
CCGGTTGACGGTGTCCAACCCCTCCAAGGACGACTTGGACCACTA
Found at i:80000 original size:5 final size:5
Alignment explanation
Indices: 79990--80029 Score: 57
Period size: 5 Copynumber: 8.4 Consensus size: 5
79980 TCCCTTACAC
*
79990 CACCA CA-C- CACTA CACCA CACCA CACCA CACCA CACCA CA
1 CACCA CACCA CACCA CACCA CACCA CACCA CACCA CACCA CA
80030 TCATGTCCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 2 0.06
4 1 0.03
5 28 0.90
ACGTcount: A:0.40, C:0.57, G:0.00, T:0.03
Consensus pattern (5 bp):
CACCA
Left flanking sequence: Indices 79490 -- 79989
CCTCCTTCTGGACACCTGCTTCGTGTTCGTCTAGTCCCAAAACGAACAGGTGGGATGATGTTTCC
TAATCGAGACCTGCGTCGTCTACCCAACCAACAACTATAAATAAGTGCACTTCGTCGAAATGACT
TCGTCGAACCGTCGAACGTGACCTGTCCGTCTCAATTGCATCCCTCGTGGCTAGACATTGGTTTT
GATGAGAAAGCCTATGCTACGAATGTCATCCAGACTAGCTACTAGTCACGAGTCTCATCCACACG
CCATTAGCCACTCGTCCCATTCAACTACGCTCAACCGATCAACCGTTGACTATATTTGAATTTCA
TCACCCACCTATTCACATATTTCTCTCCACTTCTCACTTTTCACCACTTCTCACTTCTCTCCACC
TACTTCTCTTCTCTTCTTTCTCACTTCCTTCGCGTCGCGAAAAACGCGTCTCGCGGTCCATCAAC
CACCACCAAGCACAACCACCCCACTACCCACCAATTCCCTTACAC
Right flanking sequence: Indices 80030 -- 80529
TCATGTCCTCATACGAGACCCAGAAACTCCAGCACACCCCGTGGGTGGAAAAGTACCGCCCGAAA
ACCCTCGACCTGGTGTCCTCCCAGGACCACACGGTGTCTGTGCTCAAAAAAACCGTGTCCCTGGG
CAACCTCCCGCACATGTTGTTCTACGGGCCCCCGGGCACCGGAAAGACCTCCACCGTGTTGGCCC
TCGCCAAGCAGTTGTACGGCCCGCACCTCTACCGGCTGCGGGTGCTCGAGCTCAACGCGTCCGAC
GAGCGCGGCATCTCGATCGTCCGCCAGAAAATCAAGAACTTTGCCCGGTTGACGGTGTCCAACCC
CTCCAAGGACGACTTGGACCACTACCCGTGTCCGCCGTTCAAGATCATCATCCTCGACGAGGCGG
ACCTGATGACCAAGGACGCCCAGCTGGCGTTGCGCCGCACCATGGAGACCTACTCGGGAGTCACG
CGGTTCTGTCTCATCTGCAACTACATCACCCGGATCATCGACCCG
Found at i:80008 original size:13 final size:13
Alignment explanation
Indices: 79986--80029 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
79976 CAATTCCCTT
79986 ACACCACCACACC
1 ACACCACCACACC
79999 ACTA-CACCACACC
1 AC-ACCACCACACC
80012 ACACCACACCACACC
1 ACA-C-CACCACACC
80027 ACA
1 ACA
80030 TCATGTCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 13 0.48
14 1 0.04
15 12 0.44
ACGTcount: A:0.41, C:0.57, G:0.00, T:0.02
Consensus pattern (13 bp):
ACACCACCACACC
Left flanking sequence: Indices 79486 -- 79985
TGGACCTCCTTCTGGACACCTGCTTCGTGTTCGTCTAGTCCCAAAACGAACAGGTGGGATGATGT
TTCCTAATCGAGACCTGCGTCGTCTACCCAACCAACAACTATAAATAAGTGCACTTCGTCGAAAT
GACTTCGTCGAACCGTCGAACGTGACCTGTCCGTCTCAATTGCATCCCTCGTGGCTAGACATTGG
TTTTGATGAGAAAGCCTATGCTACGAATGTCATCCAGACTAGCTACTAGTCACGAGTCTCATCCA
CACGCCATTAGCCACTCGTCCCATTCAACTACGCTCAACCGATCAACCGTTGACTATATTTGAAT
TTCATCACCCACCTATTCACATATTTCTCTCCACTTCTCACTTTTCACCACTTCTCACTTCTCTC
CACCTACTTCTCTTCTCTTCTTTCTCACTTCCTTCGCGTCGCGAAAAACGCGTCTCGCGGTCCAT
CAACCACCACCAAGCACAACCACCCCACTACCCACCAATTCCCTT
Right flanking sequence: Indices 80030 -- 80529
TCATGTCCTCATACGAGACCCAGAAACTCCAGCACACCCCGTGGGTGGAAAAGTACCGCCCGAAA
ACCCTCGACCTGGTGTCCTCCCAGGACCACACGGTGTCTGTGCTCAAAAAAACCGTGTCCCTGGG
CAACCTCCCGCACATGTTGTTCTACGGGCCCCCGGGCACCGGAAAGACCTCCACCGTGTTGGCCC
TCGCCAAGCAGTTGTACGGCCCGCACCTCTACCGGCTGCGGGTGCTCGAGCTCAACGCGTCCGAC
GAGCGCGGCATCTCGATCGTCCGCCAGAAAATCAAGAACTTTGCCCGGTTGACGGTGTCCAACCC
CTCCAAGGACGACTTGGACCACTACCCGTGTCCGCCGTTCAAGATCATCATCCTCGACGAGGCGG
ACCTGATGACCAAGGACGCCCAGCTGGCGTTGCGCCGCACCATGGAGACCTACTCGGGAGTCACG
CGGTTCTGTCTCATCTGCAACTACATCACCCGGATCATCGACCCG
Found at i:81154 original size:36 final size:37
Alignment explanation
Indices: 81072--81154 Score: 100
Period size: 36 Copynumber: 2.3 Consensus size: 37
81062 AGGAGGTGTG
*
81072 TAGTAGTAATAAGCCAGGCGTTTTAAACAGAGGCGTT
1 TAGTAGTAATAAGCCAGGCGTCTTAAACAGAGGCGTT
* *
81109 TAGTAGTAATAAGGCCAGGCG-CTT-AGCCGAGG-GCTT
1 TAGTAGTAATAA-GCCAGGCGTCTTAAACAGAGGCG-TT
81145 TAGTAGTAAT
1 TAGTAGTAAT
81155 GAAAGAATGA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
35 1 0.02
36 18 0.44
37 14 0.34
38 8 0.20
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (37 bp):
TAGTAGTAATAAGCCAGGCGTCTTAAACAGAGGCGTT
Left flanking sequence: Indices 80572 -- 81071
GACGACCTGGCGGTGGCGCGGTTGAGCCACATCGCGTCCGAGGAGGGGGTCCCCGTGGACGGCGA
CGGGGTGTTTGTCGAGCTCCTCCAGGTGTCTGGCGGCGACTTACGTAAGGCCATCACCTACCTCC
AGCTGGCCACCAAGCTCACGCTGGTGGACGGCACCGCCACCCCGACGATCTCCGGGGCGATGGTG
CGGGAGATCGCCGGGATCTTGCCCCAGCCGGTGGTGGACGCGTTGGCGCAGGCGATCCGCCACAA
GGAGCAGCAGAAGATCACCGCCACCGTGCAGGAGCTCGTGTACCAGGGGTGGAGCGCCCAGCAGG
TGGCGGACCAGCTCCACGATGTGTTTATTTTGGACGACGAGGTGGCGGGCGCGGTCAAGAACCAG
GTGGCGCGGCGGTTGTTTGACCTGGACCGCCGGCTCAACAACGGGGGCGACGAGCACATCCAGTT
GTTGAACTTGTCGTTGCAGATCGCGGAGGCATTCTAGGAGGTGTG
Right flanking sequence: Indices 81155 -- 81654
GAAAGAATGAAAGAAGTAGGTTTGGTGGAGAAGGAACGGGAGACGGAATAGGGTGGGAGGGGCTT
GAGGGGACGGACTAGTAGGGTTTCCATGGGAGAAAACAGGAAAATACCAGTTGATTGCTGATTGT
GGGAATACCATTCGATTGGTTGAATTGAGGGTGAATATTATTTGATATTTGAATTGCCAATCTTC
TACAGTGACTTGTTGATAAGCGTTACCGTCGGTGGGTTAGTTTCCTGCCCAGGTGGGCTAGCCTT
GGGTGGAGGGCCTTATGTTCACTTTGTTGGCTCCCAAATACCTGGTTATACACCTGACCAGGGTA
GCCATCTAATTATGAGGTAATTACAGGAATGTAAACCCGTCTAGATCACGCAACCTACACTGCTG
GATATTGTTCCACTCTATTGAATAGAGTCTCTCGACTATCGGGATCTCCATCTAATTCCATAACC
GCATTTCCCCTTCGATCTGAGTAAAAATCTCTCCATGGCTAAAAA
Found at i:82516 original size:1 final size:1
Alignment explanation
Indices: 82510--83049 Score: 1080
Period size: 1 Copynumber: 540.0 Consensus size: 1
82500 TAAATCAGAG
82510 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82575 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82640 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82705 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82770 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82835 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82900 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
82965 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83030 AAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAA
83050 CACTGAAGTC
Statistics
Matches: 539, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 539 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Left flanking sequence: Indices 82010 -- 82509
AGGTGGCAAGCATTGGTTCCTAGCGAAGCAGCGAAAATGAAATGAGCAAAATCGAAAAATCGCGG
TTTCTTACGAGTATTTACCGCAAGCGTGGAGATTTTATAACCGTCCATGGAGTTCCCATGAGTTC
GTTTAAATCGTGTCTCAGATCATGTCTCAGAATGGACTGCACCATGCTAGTGAAGGTGATGCTGT
GCAATACGAAAGGGAAAATAATCACGACCTGGGGTGCAAATCAACAATCTTGGTACTTAAAACAT
TGTATGAAATATTATTATAGTCTCGTTATGTCAACGGTTAAGTTTAATAGACTCAGTGATTGAAT
TTGTTATTTTCCTTCAATTCATAATAGGGTACTTTCCACTCCGTTCATTTGAAAGAAATAATTCA
ATCGAGAATGCTACGCTATTCTCTTGCGGTTCTAGTGGTCAAATAATATTTAAACAACGAAAATA
GAGCAGAAACCAACTAAACGTTGCTAATCCCAAAATAAATCAGAG
Right flanking sequence: Indices 83050 -- 83549
CACTGAAGTCTCGAATAAAAAACCAATACTGAAGTCTCGAATAAATCAAAAACCCAACACTAACG
TCTCTCAACCTTCTTTATCTTATCAACGGTGGCTTGCGCCCATCATACTTTACACTAATAAACAA
ACTACGGCGTTTGGCCGACTACTTAGGCGGCTGTTGCTGGCCGGGCTGGCCTGGTTGCCCTTGGC
CAAGCTGGCCCTGTCCCGGCTGGCCCTGTCCAGGCTGGCCCTGTCCAGGCTGCCCAGGCTGTCCC
TGGCCCGGCTGGCCCTGGCCCGGTCTCATTTGCATCCCCGGAGGCATCATGTAGCCAGGGGGCGG
GAAGGGCATCCCCCGAGGAGGCATCTGCATCCCAGGCGGAGGCGGGGGCATCCCGTTGGGCATTT
GCATCCCGGGAGGCCCGTAGGGACCCGCGGGGCCCATCATCGGGTGGCCGTGCGGCGGGAAGGGC
ATCCCATTGGGCCCCGGGCCCATGGGCGGCGGGCGCGAAAACTGC
Found at i:83069 original size:26 final size:26
Alignment explanation
Indices: 83040--83094 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
83030 AAAAAAAAAA
83040 AAAAAAAAAACACTGAAGTCTCGAAT
1 AAAAAAAAAACACTGAAGTCTCGAAT
** *
83066 AAAAAACCAATACTGAAGTCTCGAAT
1 AAAAAAAAAACACTGAAGTCTCGAAT
83092 AAA
1 AAA
83095 TCAAAAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.56, C:0.16, G:0.11, T:0.16
Consensus pattern (26 bp):
AAAAAAAAAACACTGAAGTCTCGAAT
Left flanking sequence: Indices 82540 -- 83039
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Right flanking sequence: Indices 83095 -- 83594
TCAAAAACCCAACACTAACGTCTCTCAACCTTCTTTATCTTATCAACGGTGGCTTGCGCCCATCA
TACTTTACACTAATAAACAAACTACGGCGTTTGGCCGACTACTTAGGCGGCTGTTGCTGGCCGGG
CTGGCCTGGTTGCCCTTGGCCAAGCTGGCCCTGTCCCGGCTGGCCCTGTCCAGGCTGGCCCTGTC
CAGGCTGCCCAGGCTGTCCCTGGCCCGGCTGGCCCTGGCCCGGTCTCATTTGCATCCCCGGAGGC
ATCATGTAGCCAGGGGGCGGGAAGGGCATCCCCCGAGGAGGCATCTGCATCCCAGGCGGAGGCGG
GGGCATCCCGTTGGGCATTTGCATCCCGGGAGGCCCGTAGGGACCCGCGGGGCCCATCATCGGGT
GGCCGTGCGGCGGGAAGGGCATCCCATTGGGCCCCGGGCCCATGGGCGGCGGGCGCGAAAACTGC
TGCTTCATCCACGGGGGGATGGGCGGGTTCCCCAGCGGGTGCTGC
Found at i:83268 original size:15 final size:15
Alignment explanation
Indices: 83248--83296 Score: 89
Period size: 15 Copynumber: 3.3 Consensus size: 15
83238 CCTTGGCCAA
*
83248 GCTGGCCCTGTCCCG
1 GCTGGCCCTGTCCAG
83263 GCTGGCCCTGTCCAG
1 GCTGGCCCTGTCCAG
83278 GCTGGCCCTGTCCAG
1 GCTGGCCCTGTCCAG
83293 GCTG
1 GCTG
83297 CCCAGGCTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.04, C:0.41, G:0.35, T:0.20
Consensus pattern (15 bp):
GCTGGCCCTGTCCAG
Left flanking sequence: Indices 82748 -- 83247
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGAAGTCTCGAATAAAAAAC
CAATACTGAAGTCTCGAATAAATCAAAAACCCAACACTAACGTCTCTCAACCTTCTTTATCTTAT
CAACGGTGGCTTGCGCCCATCATACTTTACACTAATAAACAAACTACGGCGTTTGGCCGACTACT
TAGGCGGCTGTTGCTGGCCGGGCTGGCCTGGTTGCCCTTGGCCAA
Right flanking sequence: Indices 83297 -- 83796
CCCAGGCTGTCCCTGGCCCGGCTGGCCCTGGCCCGGTCTCATTTGCATCCCCGGAGGCATCATGT
AGCCAGGGGGCGGGAAGGGCATCCCCCGAGGAGGCATCTGCATCCCAGGCGGAGGCGGGGGCATC
CCGTTGGGCATTTGCATCCCGGGAGGCCCGTAGGGACCCGCGGGGCCCATCATCGGGTGGCCGTG
CGGCGGGAAGGGCATCCCATTGGGCCCCGGGCCCATGGGCGGCGGGCGCGAAAACTGCTGCTTCA
TCCACGGGGGGATGGGCGGGTTCCCCAGCGGGTGCTGCTGGTGGTACGGGAGCGGGTTGGGCTGC
GACGGCTGGCCCTGGTTCGGGCCCAGACCCTGGCTGGGGCCCTGGTTCAGGCCCTGTTTCGGGCC
TGGGCTCGGCCCAGACTCCTGGTTCGGGCCCGACGGCCGGGCCTTGGCCTGCTGCGGCGACCCCG
AGGGGGACTCCTTTTTGTTGAGCAACGCCATGAAGAACGAGTCGT
Found at i:83268 original size:24 final size:24
Alignment explanation
Indices: 83241--83323 Score: 67
Period size: 24 Copynumber: 3.2 Consensus size: 24
83231 TGGTTGCCCT
*
83241 TGGCCAAGCTGGCCCTGTCCCGGC
1 TGGCCAGGCTGGCCCTGTCCCGGC
*
83265 TGGCCCTGTCCAGGCTGGCCCTGTCCAGGC
1 T-G----G-CCAGGCTGGCCCTGTCCCGGC
* * *
83295 TGCCCAGGCTGTCCCTGGCCCGGC
1 TGGCCAGGCTGGCCCTGTCCCGGC
83319 TGGCC
1 TGGCC
83324 CTGGCCCGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
24 23 0.50
25 1 0.02
29 2 0.04
30 20 0.43
ACGTcount: A:0.06, C:0.42, G:0.34, T:0.18
Consensus pattern (24 bp):
TGGCCAGGCTGGCCCTGTCCCGGC
Left flanking sequence: Indices 82741 -- 83240
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGAAGTCTCGAAT
AAAAAACCAATACTGAAGTCTCGAATAAATCAAAAACCCAACACTAACGTCTCTCAACCTTCTTT
ATCTTATCAACGGTGGCTTGCGCCCATCATACTTTACACTAATAAACAAACTACGGCGTTTGGCC
GACTACTTAGGCGGCTGTTGCTGGCCGGGCTGGCCTGGTTGCCCT
Right flanking sequence: Indices 83324 -- 83823
CTGGCCCGGTCTCATTTGCATCCCCGGAGGCATCATGTAGCCAGGGGGCGGGAAGGGCATCCCCC
GAGGAGGCATCTGCATCCCAGGCGGAGGCGGGGGCATCCCGTTGGGCATTTGCATCCCGGGAGGC
CCGTAGGGACCCGCGGGGCCCATCATCGGGTGGCCGTGCGGCGGGAAGGGCATCCCATTGGGCCC
CGGGCCCATGGGCGGCGGGCGCGAAAACTGCTGCTTCATCCACGGGGGGATGGGCGGGTTCCCCA
GCGGGTGCTGCTGGTGGTACGGGAGCGGGTTGGGCTGCGACGGCTGGCCCTGGTTCGGGCCCAGA
CCCTGGCTGGGGCCCTGGTTCAGGCCCTGTTTCGGGCCTGGGCTCGGCCCAGACTCCTGGTTCGG
GCCCGACGGCCGGGCCTTGGCCTGCTGCGGCGACCCCGAGGGGGACTCCTTTTTGTTGAGCAACG
CCATGAAGAACGAGTCGTTGGACTGCTGGCCCGGGAGCCCCATCG
Found at i:83284 original size:30 final size:29
Alignment explanation
Indices: 83243--83326 Score: 88
Period size: 30 Copynumber: 3.0 Consensus size: 29
83233 GTTGCCCTTG
*
83243 GCCAAGCTGGCCCTGTCCCGGCTGGCCCT
1 GCCAGGCTGGCCCTGTCCCGGCTGGCCCT
*
83272 GTCCAGGCTGGCCCTGTCCAGGCT-G--C-
1 G-CCAGGCTGGCCCTGTCCCGGCTGGCCCT
* *
83298 -CCAGGCTGTCCCTGGCCCGGCTGGCCCT
1 GCCAGGCTGGCCCTGTCCCGGCTGGCCCT
83326 G
1 G
83327 GCCCGGTCTC
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
24 19 0.43
25 1 0.02
27 2 0.05
29 2 0.05
30 20 0.45
ACGTcount: A:0.06, C:0.43, G:0.33, T:0.18
Consensus pattern (29 bp):
GCCAGGCTGGCCCTGTCCCGGCTGGCCCT
Left flanking sequence: Indices 82743 -- 83242
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGAAGTCTCGAATAA
AAAACCAATACTGAAGTCTCGAATAAATCAAAAACCCAACACTAACGTCTCTCAACCTTCTTTAT
CTTATCAACGGTGGCTTGCGCCCATCATACTTTACACTAATAAACAAACTACGGCGTTTGGCCGA
CTACTTAGGCGGCTGTTGCTGGCCGGGCTGGCCTGGTTGCCCTTG
Right flanking sequence: Indices 83327 -- 83826
GCCCGGTCTCATTTGCATCCCCGGAGGCATCATGTAGCCAGGGGGCGGGAAGGGCATCCCCCGAG
GAGGCATCTGCATCCCAGGCGGAGGCGGGGGCATCCCGTTGGGCATTTGCATCCCGGGAGGCCCG
TAGGGACCCGCGGGGCCCATCATCGGGTGGCCGTGCGGCGGGAAGGGCATCCCATTGGGCCCCGG
GCCCATGGGCGGCGGGCGCGAAAACTGCTGCTTCATCCACGGGGGGATGGGCGGGTTCCCCAGCG
GGTGCTGCTGGTGGTACGGGAGCGGGTTGGGCTGCGACGGCTGGCCCTGGTTCGGGCCCAGACCC
TGGCTGGGGCCCTGGTTCAGGCCCTGTTTCGGGCCTGGGCTCGGCCCAGACTCCTGGTTCGGGCC
CGACGGCCGGGCCTTGGCCTGCTGCGGCGACCCCGAGGGGGACTCCTTTTTGTTGAGCAACGCCA
TGAAGAACGAGTCGTTGGACTGCTGGCCCGGGAGCCCCATCGGCT
Found at i:83325 original size:15 final size:15
Alignment explanation
Indices: 83296--83332 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
83286 TGTCCAGGCT
*
83296 GCCCAGGCTGTCCCTG
1 GCCC-GGCTGGCCCTG
83312 GCCCGGCTGGCCCTG
1 GCCCGGCTGGCCCTG
83327 GCCCGG
1 GCCCGG
83333 TCTCATTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.03, C:0.46, G:0.38, T:0.14
Consensus pattern (15 bp):
GCCCGGCTGGCCCTG
Left flanking sequence: Indices 82796 -- 83295
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGA
AGTCTCGAATAAAAAACCAATACTGAAGTCTCGAATAAATCAAAAACCCAACACTAACGTCTCTC
AACCTTCTTTATCTTATCAACGGTGGCTTGCGCCCATCATACTTTACACTAATAAACAAACTACG
GCGTTTGGCCGACTACTTAGGCGGCTGTTGCTGGCCGGGCTGGCCTGGTTGCCCTTGGCCAAGCT
GGCCCTGTCCCGGCTGGCCCTGTCCAGGCTGGCCCTGTCCAGGCT
Right flanking sequence: Indices 83333 -- 83832
TCTCATTTGCATCCCCGGAGGCATCATGTAGCCAGGGGGCGGGAAGGGCATCCCCCGAGGAGGCA
TCTGCATCCCAGGCGGAGGCGGGGGCATCCCGTTGGGCATTTGCATCCCGGGAGGCCCGTAGGGA
CCCGCGGGGCCCATCATCGGGTGGCCGTGCGGCGGGAAGGGCATCCCATTGGGCCCCGGGCCCAT
GGGCGGCGGGCGCGAAAACTGCTGCTTCATCCACGGGGGGATGGGCGGGTTCCCCAGCGGGTGCT
GCTGGTGGTACGGGAGCGGGTTGGGCTGCGACGGCTGGCCCTGGTTCGGGCCCAGACCCTGGCTG
GGGCCCTGGTTCAGGCCCTGTTTCGGGCCTGGGCTCGGCCCAGACTCCTGGTTCGGGCCCGACGG
CCGGGCCTTGGCCTGCTGCGGCGACCCCGAGGGGGACTCCTTTTTGTTGAGCAACGCCATGAAGA
ACGAGTCGTTGGACTGCTGGCCCGGGAGCCCCATCGGCTGCCCGG
Found at i:85512 original size:12 final size:12
Alignment explanation
Indices: 85495--85519 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85485 GTTGGTGATT
85495 GTGTGTTGTGTG
1 GTGTGTTGTGTG
85507 GTGTGTTGTGTG
1 GTGTGTTGTGTG
85519 G
1 G
85520 GTGGAGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (12 bp):
GTGTGTTGTGTG
Left flanking sequence: Indices 84995 -- 85494
GCCCTTGTCCGGGAGCTGGGCCGCCATGTCCGGGATGTCGGCGGTGAGGCGGATGGTGAGCAACT
CGTCGATGGAGTAGACGTGGGTCTTGGGGCGGGGCGCCGGCGCCGCGGCGGCGTCGGGGTCTAGT
GATGTGGGGGGCGCTGCCCCGGCGTCGGGCGCCTGGGCCACGCTGGCGAACACCTGTTCGAGGCC
CGGGGGGAGCCTTGGGGCGTCGCCCGGGGGAGAGTTTGGCTTGGGGTCAATGGGTTTGGCCCCAG
CCATGGTGATAATGGATGGATCGTCTAGGAGATCCATGGGGTGTGGTAGAGCACGGGGGTGTGTA
GGGGCGTTCTGGGGCACCGACAATTGCTGAGGTTTTTTCGTCGCGCCGGGGCGATGCACGAGGGT
GGAAAAGAGCAGGGGGGAGGGGAGAGGGGAGAGGGGAGGAAGAGGTATGGAAGGGAGGTAGAGGG
GAGGAGGGGGAGAGGAGAGAGGGTTGAGGAGAGAGGTTGGTGATT
Right flanking sequence: Indices 85520 -- 86019
GTGGAGTGTGGGTGAGGGTGCTAGGTTTGGTGTGTGCGTGGAATGTGTAGTGGTGGTGGAATGTG
TGTAGTGGTGGTGCGTGGCGGGTGAAGGCCTAGCGAGTGAGTGTGATAATGGTGATGTGGGTGTG
AGTTGGCTTGAAGGCGTTTGGTTGTTTGTGTGGAAGTGTTCTGATCTTTTCTTGGTGATCTTTCT
TACTGGCTTCGCTACGACCAGCCTTAACCATTGCGCTTGCTGGTAGCCTCGGACTCAATTGACCC
CGGGCTTGGTCTAACCAGGCAACTGGGCCACAGGCTCGGGGCTGCCGGCTACGGGAGAATGCTCT
TCCCGGTATGGAACCTACGCCTCGAGTCGCCCCGAAATTTGGCCCGAGGCCATGGTGGTGGGCAA
TGCGATAACCACGGAAAGAAATGGTGGTATGGTTAGTAGTGGATTCGAAGTAAACCACTAGTAGT
TTTGGCTAGCAATTTGGCTGGGTCCACTATTCAATGGCCCAGAAA
Found at i:85580 original size:18 final size:19
Alignment explanation
Indices: 85557--85597 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
85547 TGGTGTGTGC
85557 GTGGAA-TGTGTAGTGGTG
1 GTGGAAGTGTGTAGTGGTG
85575 GTGGAATGTGTGTAGTGGTG
1 GTGGAA-GTGTGTAGTGGTG
85595 GTG
1 GTG
85598 CGTGGCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.29
20 15 0.71
ACGTcount: A:0.15, C:0.00, G:0.51, T:0.34
Consensus pattern (19 bp):
GTGGAAGTGTGTAGTGGTG
Left flanking sequence: Indices 85057 -- 85556
ACTCGTCGATGGAGTAGACGTGGGTCTTGGGGCGGGGCGCCGGCGCCGCGGCGGCGTCGGGGTCT
AGTGATGTGGGGGGCGCTGCCCCGGCGTCGGGCGCCTGGGCCACGCTGGCGAACACCTGTTCGAG
GCCCGGGGGGAGCCTTGGGGCGTCGCCCGGGGGAGAGTTTGGCTTGGGGTCAATGGGTTTGGCCC
CAGCCATGGTGATAATGGATGGATCGTCTAGGAGATCCATGGGGTGTGGTAGAGCACGGGGGTGT
GTAGGGGCGTTCTGGGGCACCGACAATTGCTGAGGTTTTTTCGTCGCGCCGGGGCGATGCACGAG
GGTGGAAAAGAGCAGGGGGGAGGGGAGAGGGGAGAGGGGAGGAAGAGGTATGGAAGGGAGGTAGA
GGGGAGGAGGGGGAGAGGAGAGAGGGTTGAGGAGAGAGGTTGGTGATTGTGTGTTGTGTGGTGTG
TTGTGTGGGTGGAGTGTGGGTGAGGGTGCTAGGTTTGGTGTGTGC
Right flanking sequence: Indices 85598 -- 86097
CGTGGCGGGTGAAGGCCTAGCGAGTGAGTGTGATAATGGTGATGTGGGTGTGAGTTGGCTTGAAG
GCGTTTGGTTGTTTGTGTGGAAGTGTTCTGATCTTTTCTTGGTGATCTTTCTTACTGGCTTCGCT
ACGACCAGCCTTAACCATTGCGCTTGCTGGTAGCCTCGGACTCAATTGACCCCGGGCTTGGTCTA
ACCAGGCAACTGGGCCACAGGCTCGGGGCTGCCGGCTACGGGAGAATGCTCTTCCCGGTATGGAA
CCTACGCCTCGAGTCGCCCCGAAATTTGGCCCGAGGCCATGGTGGTGGGCAATGCGATAACCACG
GAAAGAAATGGTGGTATGGTTAGTAGTGGATTCGAAGTAAACCACTAGTAGTTTTGGCTAGCAAT
TTGGCTGGGTCCACTATTCAATGGCCCAGAAATCATTGAGACTCACCCGAGGCATCGAACAATCA
CCGAACCGGGAATACACCCGTGTTGGGATTTTGGGCTCTCCACAC
Found at i:86242 original size:22 final size:23
Alignment explanation
Indices: 86211--86254 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
86201 CAAATTCTGT
86211 ACTGCCACCGACATC-GCCATCC
1 ACTGCCACCGACATCAGCCATCC
*
86233 ACTGCTACCGACATCAGCCATC
1 ACTGCCACCGACATCAGCCATC
86255 GACTCAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.25, C:0.45, G:0.14, T:0.16
Consensus pattern (23 bp):
ACTGCCACCGACATCAGCCATCC
Left flanking sequence: Indices 85711 -- 86210
TTCTTACTGGCTTCGCTACGACCAGCCTTAACCATTGCGCTTGCTGGTAGCCTCGGACTCAATTG
ACCCCGGGCTTGGTCTAACCAGGCAACTGGGCCACAGGCTCGGGGCTGCCGGCTACGGGAGAATG
CTCTTCCCGGTATGGAACCTACGCCTCGAGTCGCCCCGAAATTTGGCCCGAGGCCATGGTGGTGG
GCAATGCGATAACCACGGAAAGAAATGGTGGTATGGTTAGTAGTGGATTCGAAGTAAACCACTAG
TAGTTTTGGCTAGCAATTTGGCTGGGTCCACTATTCAATGGCCCAGAAATCATTGAGACTCACCC
GAGGCATCGAACAATCACCGAACCGGGAATACACCCGTGTTGGGATTTTGGGCTCTCCACACATC
AGTCCCATGTGAACACGTCTGCAACGGCGTTTGACTGGAGGATAGCGTTTGCATCTCGTTTGCAT
CGCTCGAAGTGACTGTCTGGTGGTCTGGTGATTTTCAAATTCTGT
Right flanking sequence: Indices 86255 -- 86754
GACTCAATGGGCTAAAGGTGATTGAAATCAAAGCACTAGTCAGTGAAATCAAAGCTCTGTAGTTA
GTGAGCAGACAGCTCGCACTCCCAATTGCACCATCAGCCATCTAGCAGGTAAATACTCCTGTACA
ACTACATACTGTTGGCTCCTTTAACCCCGGTTATGCATCTAACCAAAAACGTAGCCATCTAACGA
TGCGACAGTTACAGGAAATTGAACCTTAATAGGCTACACAAACTACATTCATGGGTATTGTTGCA
CTATAGAACTGATTCTCCCGACTTTTGGACAGCTTATCTATTCCATAACCGCATTTCGTAACCTT
CGGCTACGACAAGCACCAACGGCCTCCAGCCATTGGCTTATGACCCTGAATTCGGGTCGCAACAT
ACCCTTACTCTGCTTCCACGTCCTCACTAAAAAATTATTTGTAAATGCATTCGTTTAAGCTTAAT
TTTGCAAATGGTCGTGAAATATGGAAATTTTACTGATGAATAAAA
Found at i:86894 original size:9 final size:9
Alignment explanation
Indices: 86870--86904 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
86860 GCCTGTTTCT
*
86870 GTCTGTTTC
1 GTCTGTCTC
86879 TGTCTGTCTC
1 -GTCTGTCTC
86889 GTCTGTCTC
1 GTCTGTCTC
86898 GTCTGTC
1 GTCTGTC
86905 CTTTTTTGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.29, G:0.23, T:0.49
Consensus pattern (9 bp):
GTCTGTCTC
Left flanking sequence: Indices 86370 -- 86869
AAATACTCCTGTACAACTACATACTGTTGGCTCCTTTAACCCCGGTTATGCATCTAACCAAAAAC
GTAGCCATCTAACGATGCGACAGTTACAGGAAATTGAACCTTAATAGGCTACACAAACTACATTC
ATGGGTATTGTTGCACTATAGAACTGATTCTCCCGACTTTTGGACAGCTTATCTATTCCATAACC
GCATTTCGTAACCTTCGGCTACGACAAGCACCAACGGCCTCCAGCCATTGGCTTATGACCCTGAA
TTCGGGTCGCAACATACCCTTACTCTGCTTCCACGTCCTCACTAAAAAATTATTTGTAAATGCAT
TCGTTTAAGCTTAATTTTGCAAATGGTCGTGAAATATGGAAATTTTACTGATGAATAAAAAGATA
AAAATGCTAGAGTGCCATCAAATCGATTCGTGCTTCATTTATTCCAAGTTTTGTGCTAATTTTCA
CCACCTGGCTTGGCAACGTCTGTGGTGTCTCAGGTGCCTGTTTCT
Right flanking sequence: Indices 86905 -- 87404
CTTTTTTGTCTTTTCTGTCTCGTCAGTCTCCTGTTTCTTCTATCCCGATTGTCTCTTTTCTTCTG
TCTCTCCGTCTCTTCTGTCTGTCTCTCCATTTCTTCTGTCTGTCTCTCCGTCTCCGTCCGTCTCC
CATCTCCTCTCCATCTCTTTTCTACCATTCTATATTACATCATTAGTCGTTACGAAAGATACGGG
AGATTCAACTTCATGATCTCCCGGCACATGATAAACCAGTCCACCTCGCGGAGATTGGTGCCCAC
CGCCTGGCCCTGGAGCTTCTCCTGCTCCTCCCACTTGAACAACTCGTACATGAACCGCAAGTTGG
GCTGGATGATGATGTTGAGCCGCCGCACCCGCACGTAGAGGTACGCCTCGGGGATGGTGATGTTC
AACCGCTTCATCACCTCGGCGATGGCCACGGTGGCCAGCCGCGACACCCCGACCCGGCAATGCAC
CAACACCTTGGCCTCGCCGCCCGACTCCTCGTACACCCGGTGCAA
Found at i:86992 original size:21 final size:21
Alignment explanation
Indices: 86962--87023 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
86952 ATTGTCTCTT
86962 TTCT-TCTGTCTCTCCGTCTC
1 TTCTGTCTGTCTCTCCGTCTC
* *
86982 TTCTGTCTGTCTCTCCATTTC
1 TTCTGTCTGTCTCTCCGTCTC
87003 TTCTGTCTGTCTCTCCGTCTC
1 TTCTGTCTGTCTCTCCGTCTC
87024 CGTCCGTCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.02, C:0.37, G:0.11, T:0.50
Consensus pattern (21 bp):
TTCTGTCTGTCTCTCCGTCTC
Left flanking sequence: Indices 86462 -- 86961
AGGAAATTGAACCTTAATAGGCTACACAAACTACATTCATGGGTATTGTTGCACTATAGAACTGA
TTCTCCCGACTTTTGGACAGCTTATCTATTCCATAACCGCATTTCGTAACCTTCGGCTACGACAA
GCACCAACGGCCTCCAGCCATTGGCTTATGACCCTGAATTCGGGTCGCAACATACCCTTACTCTG
CTTCCACGTCCTCACTAAAAAATTATTTGTAAATGCATTCGTTTAAGCTTAATTTTGCAAATGGT
CGTGAAATATGGAAATTTTACTGATGAATAAAAAGATAAAAATGCTAGAGTGCCATCAAATCGAT
TCGTGCTTCATTTATTCCAAGTTTTGTGCTAATTTTCACCACCTGGCTTGGCAACGTCTGTGGTG
TCTCAGGTGCCTGTTTCTGTCTGTTTCTGTCTGTCTCGTCTGTCTCGTCTGTCCTTTTTTGTCTT
TTCTGTCTCGTCAGTCTCCTGTTTCTTCTATCCCGATTGTCTCTT
Right flanking sequence: Indices 87024 -- 87523
CGTCCGTCTCCCATCTCCTCTCCATCTCTTTTCTACCATTCTATATTACATCATTAGTCGTTACG
AAAGATACGGGAGATTCAACTTCATGATCTCCCGGCACATGATAAACCAGTCCACCTCGCGGAGA
TTGGTGCCCACCGCCTGGCCCTGGAGCTTCTCCTGCTCCTCCCACTTGAACAACTCGTACATGAA
CCGCAAGTTGGGCTGGATGATGATGTTGAGCCGCCGCACCCGCACGTAGAGGTACGCCTCGGGGA
TGGTGATGTTCAACCGCTTCATCACCTCGGCGATGGCCACGGTGGCCAGCCGCGACACCCCGACC
CGGCAATGCACCAACACCTTGGCCTCGCCGCCCGACTCCTCGTACACCCGGTGCAAAAACCCGAG
GATCTGGGGAAGCGAGTGCGACAACGCATCGATGCCGTCGTCGCGGAGGTTGTTGACCTTCATGA
TGGTGTCCACCAGGCACGGGCCGTCCACCGAGATCATCTCGACGT
Found at i:89571 original size:12 final size:12
Alignment explanation
Indices: 89554--89586 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
89544 GTTTGTGTCA
*
89554 CGTGACTCGTCC
1 CGTGACTCGCCC
89566 CGTGACTCGCCC
1 CGTGACTCGCCC
89578 CGTGACTCG
1 CGTGACTCG
89587 GGATGCCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.42, G:0.27, T:0.21
Consensus pattern (12 bp):
CGTGACTCGCCC
Left flanking sequence: Indices 89054 -- 89553
TGTGGTAGAAGTGGAAGTTGTTCTGGGTCAAGAAGTTGGTGGTGAACGGGTCGGCGCGGTTGTCG
TCGTCGGTCTGGATGCACATGAGGAAGCGCACGTGACTGGGTTTGTCTACCGGGGTGGGCACCAA
CGCCTGCGAGGTGAAGAACTGGCGCTGGGCGTAGTTGTCTGCGTGGAGCCCGTGGAGCCACGGGA
ACATGTCGTTGGTGCACGGGAGCGGCTTGTTGAAGTACCACTGGAGACAGTGCCGGAGCTGGGGC
GTAGTGAGATGCTTGATGGTTACGAGCCCGGCGAGGGTTGCGGGCACGGGGTGCGGCGCGAGCTG
GTGGTAGTATGCCAGGGTTGGCGCCAACGGCGAGTCGTCCTCGAGCGAGAGCAGCGCCATGGAGG
TGGCGGCGTCGTCACCTATTGTAAAGGGGGCGCTGTGATTGTTTTGACTCGCGTGGTGGGTCTGG
TTTTGACTCACGTTTTGGTATGGTTGGTTTTGAGCGTTTGTGTCA
Right flanking sequence: Indices 89587 -- 90086
GGATGCCACTCCCTCATCCTCAGGGGGTCAAAGCTGGCCCGCTTGGGCTCAAACGGACGGTCAAA
CAGACTCACCGAGCCAAAGGTGTTCATCAACAGCAGCAGCAGCAGCAGGGGCAGCAACGTGGTTG
CAGTCATGGGCACGGCAGCCGTCTATGTTGAATAGAGAAGGCCAGGAAACCAGGGGCTAGCGTGG
GAGCACCCGGGGGTTGAAGTACGGGATAGAACGCGGCTCTGGGTCGAGCACCGGCACGGAAACAA
AAACGGGGGAAATGCAGTGGTTGCTGGGGATTGTCCTCGCTTTAAACGGGGTTTCGCGGTGGTTC
GCGCGGCAGCAGGGGCGGGGTGTATACAGGTTTGCCGTGGAGATAAGACGAGCTGTGGTTTGGTG
GTGGGATGGCGAGAGCAGAAGTGGGAGCGTCCGGACGCGAGCTGACTCGGGCCCGTTCCAGGTGG
GGTTGTAGGGAGGCGGTTGTGTAGGGAACCGACGGGCCACAACCA
Found at i:90361 original size:9 final size:9
Alignment explanation
Indices: 90349--90382 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
90339 GAGGGTTGGT
*
90349 TGGTGGGGG
1 TGGTGGGTG
90358 TGGTGGGTG
1 TGGTGGGTG
90367 TGGTGGGTG
1 TGGTGGGTG
90376 TGGTGGG
1 TGGTGGG
90383 AGAGTATGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.71, T:0.29
Consensus pattern (9 bp):
TGGTGGGTG
Left flanking sequence: Indices 89849 -- 90348
ACGGGGGAAATGCAGTGGTTGCTGGGGATTGTCCTCGCTTTAAACGGGGTTTCGCGGTGGTTCGC
GCGGCAGCAGGGGCGGGGTGTATACAGGTTTGCCGTGGAGATAAGACGAGCTGTGGTTTGGTGGT
GGGATGGCGAGAGCAGAAGTGGGAGCGTCCGGACGCGAGCTGACTCGGGCCCGTTCCAGGTGGGG
TTGTAGGGAGGCGGTTGTGTAGGGAACCGACGGGCCACAACCACGCACGGCATTTGCCGCTAGTG
GACGGTGGGAGTGCATACGGGCGAGGTTCGGGACTACTCAATGAGGCAACGATACGAGACGAAGG
TCACGGGAGTGGCGCCAGAAGTGGTGGTGGGTGGAGTGGGCAGGCATGGTGTGGGCGGGTATGGG
GTGAGGTGGCCCGTGACGACCGTTGTGGGGTAACAATGGGAGAGGTAGGTGGTGGGGTAATGTAG
AGGTAGGGTTGTGATGGATTATGTAAGAGGGGAAGGAGGGTTGGT
Right flanking sequence: Indices 90383 -- 90882
AGAGTATGGGATGGTAGAGGGGTGGGACGGTGTAGAGGTGGTAGTGGTGGGCCAGGTGGCGGTGG
GTGGCGGCCGGGCTGCGGGCACCGGATTTCCGAGGTGGTATTGGTCGATGTGGCTAAGCACAGGC
CCGCCAAGACTACGGAGAATAAATGGCGTGGGGAAAGGAAAAAGGGAGAATAGAGGACGAGTGGG
AATGAGTGTGGGAAGGTGACGAGTGGAAGGAGTCGAGTGTGGAAGGAGTTGAACGGAGAAAAGGT
AATTGAGAGAAGGTGGTAATTGAGAGAAGGTAATGGTTGAAGTCACTTTAGGATGTAGTACGAAG
GTATGCGAGACAGAAGTAGAGACCAGTGATAGTGATGATCGAGACAACAGTAATGGGACAACTGT
ATTTGAGACAATTGTATTTGAGACAACTGTATTCGAGACAACTGTGTAGTACGCTCGATTAGAGC
CTTTCAAATCGCAATACGTCCCTGGTTTTAAATTTGGTCACAGCT
Found at i:90655 original size:14 final size:14
Alignment explanation
Indices: 90633--90676 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 14
90623 GAGTTGAACG
*
90633 GAGAAAAGGTAATT
1 GAGAGAAGGTAATT
90647 GAGAGAAGGTGGTAATT
1 GAGAGAA---GGTAATT
90664 GAGAGAAGGTAAT
1 GAGAGAAGGTAAT
90677 GGTTGAAGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 12 0.46
17 14 0.54
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.20
Consensus pattern (14 bp):
GAGAGAAGGTAATT
Left flanking sequence: Indices 90133 -- 90632
GGTTCGGGACTACTCAATGAGGCAACGATACGAGACGAAGGTCACGGGAGTGGCGCCAGAAGTGG
TGGTGGGTGGAGTGGGCAGGCATGGTGTGGGCGGGTATGGGGTGAGGTGGCCCGTGACGACCGTT
GTGGGGTAACAATGGGAGAGGTAGGTGGTGGGGTAATGTAGAGGTAGGGTTGTGATGGATTATGT
AAGAGGGGAAGGAGGGTTGGTTGGTGGGGGTGGTGGGTGTGGTGGGTGTGGTGGGAGAGTATGGG
ATGGTAGAGGGGTGGGACGGTGTAGAGGTGGTAGTGGTGGGCCAGGTGGCGGTGGGTGGCGGCCG
GGCTGCGGGCACCGGATTTCCGAGGTGGTATTGGTCGATGTGGCTAAGCACAGGCCCGCCAAGAC
TACGGAGAATAAATGGCGTGGGGAAAGGAAAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTG
GGAAGGTGACGAGTGGAAGGAGTCGAGTGTGGAAGGAGTTGAACG
Right flanking sequence: Indices 90677 -- 91176
GGTTGAAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGATAGTG
ATGATCGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTGTATTC
GAGACAACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAAATT
TGGTCACAGCTTAGTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACA
GCTTAGTCCCAACTCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTG
GTGACCACCTCTGGTGACTCGCCACTTTGTAACCGATGCCCACCAGACCCCCCACCATGACCCAC
CGTGACCCACCATGACCCACGACCCACCGTGACCCACCATTACCCACCGTGACCCACCGTGACCA
CCACCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCAGTAGA
Found at i:90662 original size:17 final size:17
Alignment explanation
Indices: 90640--90673 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
90630 ACGGAGAAAA
90640 GGTAATTGAGAGAAGGT
1 GGTAATTGAGAGAAGGT
90657 GGTAATTGAGAGAAGGT
1 GGTAATTGAGAGAAGGT
90674 AATGGTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.41, T:0.24
Consensus pattern (17 bp):
GGTAATTGAGAGAAGGT
Left flanking sequence: Indices 90140 -- 90639
GACTACTCAATGAGGCAACGATACGAGACGAAGGTCACGGGAGTGGCGCCAGAAGTGGTGGTGGG
TGGAGTGGGCAGGCATGGTGTGGGCGGGTATGGGGTGAGGTGGCCCGTGACGACCGTTGTGGGGT
AACAATGGGAGAGGTAGGTGGTGGGGTAATGTAGAGGTAGGGTTGTGATGGATTATGTAAGAGGG
GAAGGAGGGTTGGTTGGTGGGGGTGGTGGGTGTGGTGGGTGTGGTGGGAGAGTATGGGATGGTAG
AGGGGTGGGACGGTGTAGAGGTGGTAGTGGTGGGCCAGGTGGCGGTGGGTGGCGGCCGGGCTGCG
GGCACCGGATTTCCGAGGTGGTATTGGTCGATGTGGCTAAGCACAGGCCCGCCAAGACTACGGAG
AATAAATGGCGTGGGGAAAGGAAAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGT
GACGAGTGGAAGGAGTCGAGTGTGGAAGGAGTTGAACGGAGAAAA
Right flanking sequence: Indices 90674 -- 91173
AATGGTTGAAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGATA
GTGATGATCGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTGTA
TTCGAGACAACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAA
ATTTGGTCACAGCTTAGTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTC
ACAGCTTAGTCCCAACTCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCT
TTGGTGACCACCTCTGGTGACTCGCCACTTTGTAACCGATGCCCACCAGACCCCCCACCATGACC
CACCGTGACCCACCATGACCCACGACCCACCGTGACCCACCATTACCCACCGTGACCCACCGTGA
CCACCACCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCAGT
Found at i:90788 original size:15 final size:15
Alignment explanation
Indices: 90764--90817 Score: 90
Period size: 15 Copynumber: 3.6 Consensus size: 15
90754 ACAGTAATGG
90764 GACAACTGTATTTGA
1 GACAACTGTATTTGA
*
90779 GACAATTGTATTTGA
1 GACAACTGTATTTGA
*
90794 GACAACTGTATTCGA
1 GACAACTGTATTTGA
90809 GACAACTGT
1 GACAACTGT
90818 GTAGTACGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (15 bp):
GACAACTGTATTTGA
Left flanking sequence: Indices 90264 -- 90763
TGGGGTAACAATGGGAGAGGTAGGTGGTGGGGTAATGTAGAGGTAGGGTTGTGATGGATTATGTA
AGAGGGGAAGGAGGGTTGGTTGGTGGGGGTGGTGGGTGTGGTGGGTGTGGTGGGAGAGTATGGGA
TGGTAGAGGGGTGGGACGGTGTAGAGGTGGTAGTGGTGGGCCAGGTGGCGGTGGGTGGCGGCCGG
GCTGCGGGCACCGGATTTCCGAGGTGGTATTGGTCGATGTGGCTAAGCACAGGCCCGCCAAGACT
ACGGAGAATAAATGGCGTGGGGAAAGGAAAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGG
GAAGGTGACGAGTGGAAGGAGTCGAGTGTGGAAGGAGTTGAACGGAGAAAAGGTAATTGAGAGAA
GGTGGTAATTGAGAGAAGGTAATGGTTGAAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGAC
AGAAGTAGAGACCAGTGATAGTGATGATCGAGACAACAGTAATGG
Right flanking sequence: Indices 90818 -- 91317
GTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAAATTTGGTCACAGCT
TAGTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTAGTCCCA
ACTCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGACCACCTC
TGGTGACTCGCCACTTTGTAACCGATGCCCACCAGACCCCCCACCATGACCCACCGTGACCCACC
ATGACCCACGACCCACCGTGACCCACCATTACCCACCGTGACCCACCGTGACCACCACCTGAGCG
ATGAAACTAGGAAACTACCTGGTCACGCAGTAGAACCCTGCCTCTCTTGTCCCATGCCAATGAAG
CCTTTAACTACACGTTATCCTCCTGGTGCCCCTGGGAACACAATGGCCAGTAGCTTCTCTACCCT
CGGACTTATCACCACACCGCCTCCATATGACACAAATCCGTTGCC
Found at i:90932 original size:23 final size:23
Alignment explanation
Indices: 90901--90976 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
90891 GCTCTAATCA
* *
90901 CAGCT-TAGTCTCAGCTTGGTCC
1 CAGCTCTAGTCACAGCTTAGTCC
90923 CAGCTCTAGTCACAGCTTAGTCC
1 CAGCTCTAGTCACAGCTTAGTCC
* * * *
90946 CAACTCTACTCCCAGCTTAGTCT
1 CAGCTCTAGTCACAGCTTAGTCC
*
90969 CAGTTCTA
1 CAGCTCTA
90977 CTCCTCATCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 5 0.11
23 40 0.89
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.30
Consensus pattern (23 bp):
CAGCTCTAGTCACAGCTTAGTCC
Left flanking sequence: Indices 90401 -- 90900
GGGGTGGGACGGTGTAGAGGTGGTAGTGGTGGGCCAGGTGGCGGTGGGTGGCGGCCGGGCTGCGG
GCACCGGATTTCCGAGGTGGTATTGGTCGATGTGGCTAAGCACAGGCCCGCCAAGACTACGGAGA
ATAAATGGCGTGGGGAAAGGAAAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGTG
ACGAGTGGAAGGAGTCGAGTGTGGAAGGAGTTGAACGGAGAAAAGGTAATTGAGAGAAGGTGGTA
ATTGAGAGAAGGTAATGGTTGAAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTA
GAGACCAGTGATAGTGATGATCGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATT
TGAGACAACTGTATTCGAGACAACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACG
TCCCTGGTTTTAAATTTGGTCACAGCTTAGTCTTAGCTCTAATCA
Right flanking sequence: Indices 90977 -- 91476
CTCCTCATCACAAACCACAGCTTTGGTGACCACCTCTGGTGACTCGCCACTTTGTAACCGATGCC
CACCAGACCCCCCACCATGACCCACCGTGACCCACCATGACCCACGACCCACCGTGACCCACCAT
TACCCACCGTGACCCACCGTGACCACCACCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCA
GTAGAACCCTGCCTCTCTTGTCCCATGCCAATGAAGCCTTTAACTACACGTTATCCTCCTGGTGC
CCCTGGGAACACAATGGCCAGTAGCTTCTCTACCCTCGGACTTATCACCACACCGCCTCCATATG
ACACAAATCCGTTGCCCAGAGGCTGGTTGCCTATTAAAGCCCCGAGGCTGACCGTCGCCCAAGCC
ATGGAACGTGCTCAAGTGCTCCAATGTGCACCTACTCCCAACGGCCAACGTGCACCTCCTCCCAA
CGGCCACGTGCCCCTCCTCCCAACGGCCCGTACACCCTACTCCCG
Found at i:90977 original size:23 final size:23
Alignment explanation
Indices: 90912--90980 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
90902 AGCTTAGTCT
* * *
90912 CAGCTTGGTCCCAGCTCTAGTCA
1 CAGCTTAGTCCCAGCTCTACTCC
*
90935 CAGCTTAGTCCCAACTCTACTCC
1 CAGCTTAGTCCCAGCTCTACTCC
* *
90958 CAGCTTAGTCTCAGTTCTACTCC
1 CAGCTTAGTCCCAGCTCTACTCC
90981 TCATCACAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.19, C:0.38, G:0.14, T:0.29
Consensus pattern (23 bp):
CAGCTTAGTCCCAGCTCTACTCC
Left flanking sequence: Indices 90412 -- 90911
GTGTAGAGGTGGTAGTGGTGGGCCAGGTGGCGGTGGGTGGCGGCCGGGCTGCGGGCACCGGATTT
CCGAGGTGGTATTGGTCGATGTGGCTAAGCACAGGCCCGCCAAGACTACGGAGAATAAATGGCGT
GGGGAAAGGAAAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGTGACGAGTGGAAG
GAGTCGAGTGTGGAAGGAGTTGAACGGAGAAAAGGTAATTGAGAGAAGGTGGTAATTGAGAGAAG
GTAATGGTTGAAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGA
TAGTGATGATCGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTG
TATTCGAGACAACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTT
AAATTTGGTCACAGCTTAGTCTTAGCTCTAATCACAGCTTAGTCT
Right flanking sequence: Indices 90981 -- 91480
TCATCACAAACCACAGCTTTGGTGACCACCTCTGGTGACTCGCCACTTTGTAACCGATGCCCACC
AGACCCCCCACCATGACCCACCGTGACCCACCATGACCCACGACCCACCGTGACCCACCATTACC
CACCGTGACCCACCGTGACCACCACCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCAGTAG
AACCCTGCCTCTCTTGTCCCATGCCAATGAAGCCTTTAACTACACGTTATCCTCCTGGTGCCCCT
GGGAACACAATGGCCAGTAGCTTCTCTACCCTCGGACTTATCACCACACCGCCTCCATATGACAC
AAATCCGTTGCCCAGAGGCTGGTTGCCTATTAAAGCCCCGAGGCTGACCGTCGCCCAAGCCATGG
AACGTGCTCAAGTGCTCCAATGTGCACCTACTCCCAACGGCCAACGTGCACCTCCTCCCAACGGC
CACGTGCCCCTCCTCCCAACGGCCCGTACACCCTACTCCCGTGCT
Found at i:91067 original size:10 final size:10
Alignment explanation
Indices: 91052--91134 Score: 93
Period size: 10 Copynumber: 8.7 Consensus size: 10
91042 CACCAGACCC
91052 CCCACCATGA
1 CCCACCATGA
*
91062 CCCACCGTGA
1 CCCACCATGA
91072 CCCACCATGA
1 CCCACCATGA
91082 CCCA-C--GA
1 CCCACCATGA
*
91089 CCCACCGTGA
1 CCCACCATGA
*
91099 CCCACCATTA
1 CCCACCATGA
*
91109 CCCACCGTGA
1 CCCACCATGA
*
91119 CCCACCGTGA
1 CCCACCATGA
91129 -CCACCA
1 CCCACCA
91135 CCTGAGCGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
7 6 0.10
8 1 0.02
9 6 0.10
10 50 0.79
ACGTcount: A:0.25, C:0.52, G:0.13, T:0.10
Consensus pattern (10 bp):
CCCACCATGA
Left flanking sequence: Indices 90552 -- 91051
AAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGTGACGAGTGGAAGGAGTCGAGTG
TGGAAGGAGTTGAACGGAGAAAAGGTAATTGAGAGAAGGTGGTAATTGAGAGAAGGTAATGGTTG
AAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGATAGTGATGAT
CGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTGTATTCGAGAC
AACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAAATTTGGTC
ACAGCTTAGTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTA
GTCCCAACTCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGAC
CACCTCTGGTGACTCGCCACTTTGTAACCGATGCCCACCAGACCC
Right flanking sequence: Indices 91135 -- 91634
CCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCAGTAGAACCCTGCCTCTCTTGTCCCATGC
CAATGAAGCCTTTAACTACACGTTATCCTCCTGGTGCCCCTGGGAACACAATGGCCAGTAGCTTC
TCTACCCTCGGACTTATCACCACACCGCCTCCATATGACACAAATCCGTTGCCCAGAGGCTGGTT
GCCTATTAAAGCCCCGAGGCTGACCGTCGCCCAAGCCATGGAACGTGCTCAAGTGCTCCAATGTG
CACCTACTCCCAACGGCCAACGTGCACCTCCTCCCAACGGCCACGTGCCCCTCCTCCCAACGGCC
CGTACACCCTACTCCCGTGCTCGTTCACCTCTTACAGGCCTTCACCTTTCAAACCCTGCGACCAC
AATCTCGCTCGACTCATCGGAGAAGCTTGGCACTGCCCACCCCCAACTAGGCAACTCGCTTAAAA
GCCGTCGGGACGCGTATTTTCGTCTCAGCCCCATTCTCACCGCAG
Found at i:91092 original size:17 final size:18
Alignment explanation
Indices: 91052--91103 Score: 70
Period size: 17 Copynumber: 2.8 Consensus size: 18
91042 CACCAGACCC
91052 CCCACCATGACCCACCGTGA
1 CCCACCATGACCCA-CG-GA
91072 CCCACCATGACCCAC-GA
1 CCCACCATGACCCACGGA
*
91089 CCCACCGTGACCCAC
1 CCCACCATGACCCAC
91104 CATTACCCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
17 16 0.52
19 1 0.03
20 14 0.45
ACGTcount: A:0.25, C:0.54, G:0.13, T:0.08
Consensus pattern (18 bp):
CCCACCATGACCCACGGA
Left flanking sequence: Indices 90552 -- 91051
AAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGTGACGAGTGGAAGGAGTCGAGTG
TGGAAGGAGTTGAACGGAGAAAAGGTAATTGAGAGAAGGTGGTAATTGAGAGAAGGTAATGGTTG
AAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGATAGTGATGAT
CGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTGTATTCGAGAC
AACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAAATTTGGTC
ACAGCTTAGTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTA
GTCCCAACTCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGAC
CACCTCTGGTGACTCGCCACTTTGTAACCGATGCCCACCAGACCC
Right flanking sequence: Indices 91104 -- 91603
CATTACCCACCGTGACCCACCGTGACCACCACCTGAGCGATGAAACTAGGAAACTACCTGGTCAC
GCAGTAGAACCCTGCCTCTCTTGTCCCATGCCAATGAAGCCTTTAACTACACGTTATCCTCCTGG
TGCCCCTGGGAACACAATGGCCAGTAGCTTCTCTACCCTCGGACTTATCACCACACCGCCTCCAT
ATGACACAAATCCGTTGCCCAGAGGCTGGTTGCCTATTAAAGCCCCGAGGCTGACCGTCGCCCAA
GCCATGGAACGTGCTCAAGTGCTCCAATGTGCACCTACTCCCAACGGCCAACGTGCACCTCCTCC
CAACGGCCACGTGCCCCTCCTCCCAACGGCCCGTACACCCTACTCCCGTGCTCGTTCACCTCTTA
CAGGCCTTCACCTTTCAAACCCTGCGACCACAATCTCGCTCGACTCATCGGAGAAGCTTGGCACT
GCCCACCCCCAACTAGGCAACTCGCTTAAAAGCCGTCGGGACGCG
Found at i:91093 original size:27 final size:29
Alignment explanation
Indices: 91060--91134 Score: 111
Period size: 27 Copynumber: 2.7 Consensus size: 29
91050 CCCCCACCAT
91060 GACCCACCGTGACCCACCATGACCCA-C-
1 GACCCACCGTGACCCACCATGACCCACCG
*
91087 GACCCACCGTGACCCACCATTACCCACCG
1 GACCCACCGTGACCCACCATGACCCACCG
91116 TGACCCACCGTGA-CCACCA
1 -GACCCACCGTGACCCACCA
91135 CCTGAGCGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
27 25 0.57
28 1 0.02
29 6 0.14
30 12 0.27
ACGTcount: A:0.25, C:0.51, G:0.15, T:0.09
Consensus pattern (29 bp):
GACCCACCGTGACCCACCATGACCCACCG
Left flanking sequence: Indices 90560 -- 91059
GAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGTGACGAGTGGAAGGAGTCGAGTGTGGAAGGA
GTTGAACGGAGAAAAGGTAATTGAGAGAAGGTGGTAATTGAGAGAAGGTAATGGTTGAAGTCACT
TTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGATAGTGATGATCGAGACAA
CAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTGTATTCGAGACAACTGTGT
AGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAAATTTGGTCACAGCTTA
GTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTAGTCCCAAC
TCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGACCACCTCTG
GTGACTCGCCACTTTGTAACCGATGCCCACCAGACCCCCCACCAT
Right flanking sequence: Indices 91135 -- 91634
CCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCAGTAGAACCCTGCCTCTCTTGTCCCATGC
CAATGAAGCCTTTAACTACACGTTATCCTCCTGGTGCCCCTGGGAACACAATGGCCAGTAGCTTC
TCTACCCTCGGACTTATCACCACACCGCCTCCATATGACACAAATCCGTTGCCCAGAGGCTGGTT
GCCTATTAAAGCCCCGAGGCTGACCGTCGCCCAAGCCATGGAACGTGCTCAAGTGCTCCAATGTG
CACCTACTCCCAACGGCCAACGTGCACCTCCTCCCAACGGCCACGTGCCCCTCCTCCCAACGGCC
CGTACACCCTACTCCCGTGCTCGTTCACCTCTTACAGGCCTTCACCTTTCAAACCCTGCGACCAC
AATCTCGCTCGACTCATCGGAGAAGCTTGGCACTGCCCACCCCCAACTAGGCAACTCGCTTAAAA
GCCGTCGGGACGCGTATTTTCGTCTCAGCCCCATTCTCACCGCAG
Found at i:91093 original size:37 final size:37
Alignment explanation
Indices: 91052--91123 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
91042 CACCAGACCC
*
91052 CCCACCATGACCCACCGTGACCCACCATGACCCACGA
1 CCCACCATGACCCACCATGACCCACCATGACCCACGA
* * *
91089 CCCACCGTGACCCACCATTACCCACCGTGACCCAC
1 CCCACCATGACCCACCATGACCCACCATGACCCAC
91124 CGTGACCACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.53, G:0.12, T:0.10
Consensus pattern (37 bp):
CCCACCATGACCCACCATGACCCACCATGACCCACGA
Left flanking sequence: Indices 90552 -- 91051
AAAAGGGAGAATAGAGGACGAGTGGGAATGAGTGTGGGAAGGTGACGAGTGGAAGGAGTCGAGTG
TGGAAGGAGTTGAACGGAGAAAAGGTAATTGAGAGAAGGTGGTAATTGAGAGAAGGTAATGGTTG
AAGTCACTTTAGGATGTAGTACGAAGGTATGCGAGACAGAAGTAGAGACCAGTGATAGTGATGAT
CGAGACAACAGTAATGGGACAACTGTATTTGAGACAATTGTATTTGAGACAACTGTATTCGAGAC
AACTGTGTAGTACGCTCGATTAGAGCCTTTCAAATCGCAATACGTCCCTGGTTTTAAATTTGGTC
ACAGCTTAGTCTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTA
GTCCCAACTCTACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGAC
CACCTCTGGTGACTCGCCACTTTGTAACCGATGCCCACCAGACCC
Right flanking sequence: Indices 91124 -- 91623
CGTGACCACCACCTGAGCGATGAAACTAGGAAACTACCTGGTCACGCAGTAGAACCCTGCCTCTC
TTGTCCCATGCCAATGAAGCCTTTAACTACACGTTATCCTCCTGGTGCCCCTGGGAACACAATGG
CCAGTAGCTTCTCTACCCTCGGACTTATCACCACACCGCCTCCATATGACACAAATCCGTTGCCC
AGAGGCTGGTTGCCTATTAAAGCCCCGAGGCTGACCGTCGCCCAAGCCATGGAACGTGCTCAAGT
GCTCCAATGTGCACCTACTCCCAACGGCCAACGTGCACCTCCTCCCAACGGCCACGTGCCCCTCC
TCCCAACGGCCCGTACACCCTACTCCCGTGCTCGTTCACCTCTTACAGGCCTTCACCTTTCAAAC
CCTGCGACCACAATCTCGCTCGACTCATCGGAGAAGCTTGGCACTGCCCACCCCCAACTAGGCAA
CTCGCTTAAAAGCCGTCGGGACGCGTATTTTCGTCTCAGCCCCAT
Found at i:91447 original size:23 final size:24
Alignment explanation
Indices: 91387--91459 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
91377 CTCAAGTGCT
* *
91387 CCAATGTGCACCTACTCCCAACGG
1 CCAACGTGCACCTCCTCCCAACGG
91411 CCAACGTGCACCTCCTCCCAACGG
1 CCAACGTGCACCTCCTCCCAACGG
*
91435 CC-ACGTGCCCCTCCTCCCAACGG
1 CCAACGTGCACCTCCTCCCAACGG
91458 CC
1 CC
91460 CGTACACCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 22 0.48
24 24 0.52
ACGTcount: A:0.19, C:0.51, G:0.16, T:0.14
Consensus pattern (24 bp):
CCAACGTGCACCTCCTCCCAACGG
Left flanking sequence: Indices 90887 -- 91386
CTTAGCTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTAGTCCCAACTC
TACTCCCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGACCACCTCTGGT
GACTCGCCACTTTGTAACCGATGCCCACCAGACCCCCCACCATGACCCACCGTGACCCACCATGA
CCCACGACCCACCGTGACCCACCATTACCCACCGTGACCCACCGTGACCACCACCTGAGCGATGA
AACTAGGAAACTACCTGGTCACGCAGTAGAACCCTGCCTCTCTTGTCCCATGCCAATGAAGCCTT
TAACTACACGTTATCCTCCTGGTGCCCCTGGGAACACAATGGCCAGTAGCTTCTCTACCCTCGGA
CTTATCACCACACCGCCTCCATATGACACAAATCCGTTGCCCAGAGGCTGGTTGCCTATTAAAGC
CCCGAGGCTGACCGTCGCCCAAGCCATGGAACGTGCTCAAGTGCT
Right flanking sequence: Indices 91460 -- 91959
CGTACACCCTACTCCCGTGCTCGTTCACCTCTTACAGGCCTTCACCTTTCAAACCCTGCGACCAC
AATCTCGCTCGACTCATCGGAGAAGCTTGGCACTGCCCACCCCCAACTAGGCAACTCGCTTAAAA
GCCGTCGGGACGCGTATTTTCGTCTCAGCCCCATTCTCACCGCAGAGCTGGCTCCGCCCCCTGCA
CGCACTACCATACGGGTCTGGTGAGCGCCTTGTTCCATGCCAAGCCCCTGGTGGTTGTTTTGTGC
CTCTCCCTATATATTATCGGTGATCTGCTGTGTCGCGTAATAGTCAAACGCGCGTGTGACCTGGC
ACAGTTAAGAAGCAGCACATCACCCGCACCGCTTCCGCACAGCACCCGCACAGTCCATTGCGCAC
TGATACACGAGTGGTACACCAGACACGACATTCCACAGACGGCCATTGTCACCACTGGCACAGAT
CACAACCAGTCCCACCACTGACCCAGATCATTACCACTCCTCGAT
Found at i:91469 original size:23 final size:24
Alignment explanation
Indices: 91392--91475 Score: 104
Period size: 23 Copynumber: 3.6 Consensus size: 24
91382 GTGCTCCAAT
*
91392 GTGCA-CCTACTCCCAACGGCCAAC
1 GTGCACCCTCCTCCCAACGGCC-AC
91416 GTGCA-CCTCCTCCCAACGGCCAC
1 GTGCACCCTCCTCCCAACGGCCAC
91439 GTGC-CCCTCCTCCCAACGGCC-C
1 GTGCACCCTCCTCCCAACGGCCAC
* *
91461 GTACACCCTACTCCC
1 GTGCACCCTCCTCCC
91476 GTGCTCGTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
22 4 0.07
23 31 0.56
24 20 0.36
ACGTcount: A:0.18, C:0.52, G:0.15, T:0.14
Consensus pattern (24 bp):
GTGCACCCTCCTCCCAACGGCCAC
Left flanking sequence: Indices 90892 -- 91391
CTCTAATCACAGCTTAGTCTCAGCTTGGTCCCAGCTCTAGTCACAGCTTAGTCCCAACTCTACTC
CCAGCTTAGTCTCAGTTCTACTCCTCATCACAAACCACAGCTTTGGTGACCACCTCTGGTGACTC
GCCACTTTGTAACCGATGCCCACCAGACCCCCCACCATGACCCACCGTGACCCACCATGACCCAC
GACCCACCGTGACCCACCATTACCCACCGTGACCCACCGTGACCACCACCTGAGCGATGAAACTA
GGAAACTACCTGGTCACGCAGTAGAACCCTGCCTCTCTTGTCCCATGCCAATGAAGCCTTTAACT
ACACGTTATCCTCCTGGTGCCCCTGGGAACACAATGGCCAGTAGCTTCTCTACCCTCGGACTTAT
CACCACACCGCCTCCATATGACACAAATCCGTTGCCCAGAGGCTGGTTGCCTATTAAAGCCCCGA
GGCTGACCGTCGCCCAAGCCATGGAACGTGCTCAAGTGCTCCAAT
Right flanking sequence: Indices 91476 -- 91975
GTGCTCGTTCACCTCTTACAGGCCTTCACCTTTCAAACCCTGCGACCACAATCTCGCTCGACTCA
TCGGAGAAGCTTGGCACTGCCCACCCCCAACTAGGCAACTCGCTTAAAAGCCGTCGGGACGCGTA
TTTTCGTCTCAGCCCCATTCTCACCGCAGAGCTGGCTCCGCCCCCTGCACGCACTACCATACGGG
TCTGGTGAGCGCCTTGTTCCATGCCAAGCCCCTGGTGGTTGTTTTGTGCCTCTCCCTATATATTA
TCGGTGATCTGCTGTGTCGCGTAATAGTCAAACGCGCGTGTGACCTGGCACAGTTAAGAAGCAGC
ACATCACCCGCACCGCTTCCGCACAGCACCCGCACAGTCCATTGCGCACTGATACACGAGTGGTA
CACCAGACACGACATTCCACAGACGGCCATTGTCACCACTGGCACAGATCACAACCAGTCCCACC
ACTGACCCAGATCATTACCACTCCTCGATCCACACCACTGAACCC
Found at i:91979 original size:9 final size:9
Alignment explanation
Indices: 91965--91991 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
91955 TCGATCCACA
91965 CCACTGAAC
1 CCACTGAAC
91974 CCACTGAAC
1 CCACTGAAC
91983 CCACTGAAC
1 CCACTGAAC
91992 ACACACTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.44, G:0.11, T:0.11
Consensus pattern (9 bp):
CCACTGAAC
Left flanking sequence: Indices 91465 -- 91964
ACCCTACTCCCGTGCTCGTTCACCTCTTACAGGCCTTCACCTTTCAAACCCTGCGACCACAATCT
CGCTCGACTCATCGGAGAAGCTTGGCACTGCCCACCCCCAACTAGGCAACTCGCTTAAAAGCCGT
CGGGACGCGTATTTTCGTCTCAGCCCCATTCTCACCGCAGAGCTGGCTCCGCCCCCTGCACGCAC
TACCATACGGGTCTGGTGAGCGCCTTGTTCCATGCCAAGCCCCTGGTGGTTGTTTTGTGCCTCTC
CCTATATATTATCGGTGATCTGCTGTGTCGCGTAATAGTCAAACGCGCGTGTGACCTGGCACAGT
TAAGAAGCAGCACATCACCCGCACCGCTTCCGCACAGCACCCGCACAGTCCATTGCGCACTGATA
CACGAGTGGTACACCAGACACGACATTCCACAGACGGCCATTGTCACCACTGGCACAGATCACAA
CCAGTCCCACCACTGACCCAGATCATTACCACTCCTCGATCCACA
Right flanking sequence: Indices 91992 -- 92491
ACACACTACTGAACCCACACCCACACCACTGAAACACACACCGCACACCTCCACAATGGCCTCGC
ACACCCTGCTGATGGCCGACTTTTTTGTCAACCGCTTCAACCGGGTGACGTTTGGGGTGGTCCCC
AAGGCGTCACTCGCGTACCTGAGCCTCCTGCCCCTCATCTACTGGCGGGTCTCCGACGTGGCCAC
GTTCATTTTGCTTGGTTTGGCCTACATCGGGGTCAACAAGATGGAGCCGTTTGAGCGCCAGTTCA
TGTTGAGCGATGTGCGCATCCAGCACACCTACACCGAGCACCAGCAGGTGCTGAACGTAGCCCTC
TTTATATACAGTTGCGTGGTCCCGTTTGCCATCATCTTGGTGTTTGGCGTGGTGTTCAACCGCAA
GCAGCGCGCCTACAAGATGTACGTGGCCCTCCTCGGGCTCTTGCTCCTGGTGGTCACCACCGCGT
TGGTCACCAACGCCCTCAAGAACTACATTGGCCGGCACCGGCCCG
Found at i:92016 original size:20 final size:22
Alignment explanation
Indices: 91993--92040 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
91983 CCACTGAACA
* *
91993 CACACTACTG-AACCCACACC-
1 CACACCACTGAAACACACACCG
92013 CACACCACTGAAACACACACCG
1 CACACCACTGAAACACACACCG
92035 CACACC
1 CACACC
92041 TCCACAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
21 9 0.38
22 6 0.25
ACGTcount: A:0.38, C:0.50, G:0.06, T:0.06
Consensus pattern (22 bp):
CACACCACTGAAACACACACCG
Left flanking sequence: Indices 91493 -- 91992
ACAGGCCTTCACCTTTCAAACCCTGCGACCACAATCTCGCTCGACTCATCGGAGAAGCTTGGCAC
TGCCCACCCCCAACTAGGCAACTCGCTTAAAAGCCGTCGGGACGCGTATTTTCGTCTCAGCCCCA
TTCTCACCGCAGAGCTGGCTCCGCCCCCTGCACGCACTACCATACGGGTCTGGTGAGCGCCTTGT
TCCATGCCAAGCCCCTGGTGGTTGTTTTGTGCCTCTCCCTATATATTATCGGTGATCTGCTGTGT
CGCGTAATAGTCAAACGCGCGTGTGACCTGGCACAGTTAAGAAGCAGCACATCACCCGCACCGCT
TCCGCACAGCACCCGCACAGTCCATTGCGCACTGATACACGAGTGGTACACCAGACACGACATTC
CACAGACGGCCATTGTCACCACTGGCACAGATCACAACCAGTCCCACCACTGACCCAGATCATTA
CCACTCCTCGATCCACACCACTGAACCCACTGAACCCACTGAACA
Right flanking sequence: Indices 92041 -- 92540
TCCACAATGGCCTCGCACACCCTGCTGATGGCCGACTTTTTTGTCAACCGCTTCAACCGGGTGAC
GTTTGGGGTGGTCCCCAAGGCGTCACTCGCGTACCTGAGCCTCCTGCCCCTCATCTACTGGCGGG
TCTCCGACGTGGCCACGTTCATTTTGCTTGGTTTGGCCTACATCGGGGTCAACAAGATGGAGCCG
TTTGAGCGCCAGTTCATGTTGAGCGATGTGCGCATCCAGCACACCTACACCGAGCACCAGCAGGT
GCTGAACGTAGCCCTCTTTATATACAGTTGCGTGGTCCCGTTTGCCATCATCTTGGTGTTTGGCG
TGGTGTTCAACCGCAAGCAGCGCGCCTACAAGATGTACGTGGCCCTCCTCGGGCTCTTGCTCCTG
GTGGTCACCACCGCGTTGGTCACCAACGCCCTCAAGAACTACATTGGCCGGCACCGGCCCGACTT
TTTGGTGCGGTGCGCCCCACGTGACGGCACCCCCGAGCACCAGTA
Found at i:93637 original size:15 final size:14
Alignment explanation
Indices: 93617--93682 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
93607 ATTTCGTGAG
93617 CTACCAACGAATTCA
1 CTACCAAC-AATTCA
*
93632 CTACCAA-AATTCG
1 CTACCAACAATTCA
**
93645 CTACCAACAAACCA
1 CTACCAACAATTCA
** **
93659 CTAGGAACAAACCA
1 CTACCAACAATTCA
93673 CTACCAACAA
1 CTACCAACAA
93683 ACCCCTACCA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
13 12 0.29
14 23 0.55
15 7 0.17
ACGTcount: A:0.45, C:0.35, G:0.06, T:0.14
Consensus pattern (14 bp):
CTACCAACAATTCA
Left flanking sequence: Indices 93117 -- 93616
GGAATTTTGAGACTCTGAAGACGTGGTCGTTGAGGACTGGTTTTCGAGACTGGTAAGATCAACGA
CCGCACTGTTTGTTTACGCATTTGCAATTGGGCGGTACGACTATTGACCTTCGAAGAGTCTTGTA
TTGTTCACCAATTTGTAAGATCGAAGCTCGAACAGCTCCAACACTTTTCTCAATATGCGAGTAAA
CGTCGAGACAAGATAAGACGTGTATTTTAAGACTCTTGTGCTGACGCTGAAATCATTTGTAACAC
GATGTTTGTACCAATACAAGTTCTGTTCTAAATTCTCCTATTTTTCCAGTTATCTCAGAATTTAT
TTCAAAGTCAGACCGGAAAAGTACGCAAATTGACTACCCAGTAAGTCAAACGAAGGTTTCCTCGG
AATCATAGGAGTCGGAAGTAATTGAGCCTACGGTGGTTGTTCATGGAGAACCTCCCAGCGAATCA
ATCTCGATCACCAAGCAGTTGATGATAAGCTTCTCATTTCGTGAG
Right flanking sequence: Indices 93683 -- 94182
ACCCCTACCAACCCCTACCAACCCCTACCAACAAATTTATCAACTGGTCACTCAAGTATCTTCTT
GAGGTTTTCAAGTACCTTCGAGATTCTCCACTCTCTACGACTATTCTCTATAACGTACATTCTAT
AATCACATTAACGTGGTGCGTCCGCCAATCTCGTTACTGGCCGACCCGTCGGGCATGTTCCCGTC
GCGGCCCAGCACAAACTTGTGGTAGATCGCCAGCAACTTCTTCTGCTCCAGCACCGAGATCGACA
GCTTGGTCTCCGCCAACAGTTCGCGGAAGTTGGTGTGGGTGATCACAATGACGTCGTCGGTGTGC
TCCTTCTGCTCGGTCTCCTCCAGCGCTGCTTTCTCCTGGTAGAGCTGCTGGATCTGGTTGGCGAT
CTTGACCCGGTCGGCGGGCCGGAGCTTGGCGTGGGCGAGCTGCTCCAGGTTGACCCGGAAGAACT
CGTAGTTGGCGTCGTCCTTGGGCCCGTCGCCCTGGGCCTGGGCCT
Found at i:93648 original size:13 final size:14
Alignment explanation
Indices: 93616--93654 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
93606 CATTTCGTGA
93616 GCTACCAACGAATTC
1 GCTACCAAC-AATTC
*
93631 ACTACCAA-AATTC
1 GCTACCAACAATTC
93644 GCTACCAACAA
1 GCTACCAACAA
93655 ACCACTAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 12 0.57
14 2 0.10
15 7 0.33
ACGTcount: A:0.41, C:0.33, G:0.08, T:0.18
Consensus pattern (14 bp):
GCTACCAACAATTC
Left flanking sequence: Indices 93116 -- 93615
GGGAATTTTGAGACTCTGAAGACGTGGTCGTTGAGGACTGGTTTTCGAGACTGGTAAGATCAACG
ACCGCACTGTTTGTTTACGCATTTGCAATTGGGCGGTACGACTATTGACCTTCGAAGAGTCTTGT
ATTGTTCACCAATTTGTAAGATCGAAGCTCGAACAGCTCCAACACTTTTCTCAATATGCGAGTAA
ACGTCGAGACAAGATAAGACGTGTATTTTAAGACTCTTGTGCTGACGCTGAAATCATTTGTAACA
CGATGTTTGTACCAATACAAGTTCTGTTCTAAATTCTCCTATTTTTCCAGTTATCTCAGAATTTA
TTTCAAAGTCAGACCGGAAAAGTACGCAAATTGACTACCCAGTAAGTCAAACGAAGGTTTCCTCG
GAATCATAGGAGTCGGAAGTAATTGAGCCTACGGTGGTTGTTCATGGAGAACCTCCCAGCGAATC
AATCTCGATCACCAAGCAGTTGATGATAAGCTTCTCATTTCGTGA
Right flanking sequence: Indices 93655 -- 94154
ACCACTAGGAACAAACCACTACCAACAAACCCCTACCAACCCCTACCAACCCCTACCAACAAATT
TATCAACTGGTCACTCAAGTATCTTCTTGAGGTTTTCAAGTACCTTCGAGATTCTCCACTCTCTA
CGACTATTCTCTATAACGTACATTCTATAATCACATTAACGTGGTGCGTCCGCCAATCTCGTTAC
TGGCCGACCCGTCGGGCATGTTCCCGTCGCGGCCCAGCACAAACTTGTGGTAGATCGCCAGCAAC
TTCTTCTGCTCCAGCACCGAGATCGACAGCTTGGTCTCCGCCAACAGTTCGCGGAAGTTGGTGTG
GGTGATCACAATGACGTCGTCGGTGTGCTCCTTCTGCTCGGTCTCCTCCAGCGCTGCTTTCTCCT
GGTAGAGCTGCTGGATCTGGTTGGCGATCTTGACCCGGTCGGCGGGCCGGAGCTTGGCGTGGGCG
AGCTGCTCCAGGTTGACCCGGAAGAACTCGTAGTTGGCGTCGTCC
Found at i:93669 original size:14 final size:14
Alignment explanation
Indices: 93645--93694 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
93635 CCAAAATTCG
93645 CTACCAACAAACCA
1 CTACCAACAAACCA
**
93659 CTAGGAACAAACCA
1 CTACCAACAAACCA
*
93673 CTACCAACAAACCC
1 CTACCAACAAACCA
93687 CTACCAAC
1 CTACCAAC
93695 CCCTACCAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.46, C:0.42, G:0.04, T:0.08
Consensus pattern (14 bp):
CTACCAACAAACCA
Left flanking sequence: Indices 93145 -- 93644
GTTGAGGACTGGTTTTCGAGACTGGTAAGATCAACGACCGCACTGTTTGTTTACGCATTTGCAAT
TGGGCGGTACGACTATTGACCTTCGAAGAGTCTTGTATTGTTCACCAATTTGTAAGATCGAAGCT
CGAACAGCTCCAACACTTTTCTCAATATGCGAGTAAACGTCGAGACAAGATAAGACGTGTATTTT
AAGACTCTTGTGCTGACGCTGAAATCATTTGTAACACGATGTTTGTACCAATACAAGTTCTGTTC
TAAATTCTCCTATTTTTCCAGTTATCTCAGAATTTATTTCAAAGTCAGACCGGAAAAGTACGCAA
ATTGACTACCCAGTAAGTCAAACGAAGGTTTCCTCGGAATCATAGGAGTCGGAAGTAATTGAGCC
TACGGTGGTTGTTCATGGAGAACCTCCCAGCGAATCAATCTCGATCACCAAGCAGTTGATGATAA
GCTTCTCATTTCGTGAGCTACCAACGAATTCACTACCAAAATTCG
Right flanking sequence: Indices 93695 -- 94194
CCCTACCAACCCCTACCAACAAATTTATCAACTGGTCACTCAAGTATCTTCTTGAGGTTTTCAAG
TACCTTCGAGATTCTCCACTCTCTACGACTATTCTCTATAACGTACATTCTATAATCACATTAAC
GTGGTGCGTCCGCCAATCTCGTTACTGGCCGACCCGTCGGGCATGTTCCCGTCGCGGCCCAGCAC
AAACTTGTGGTAGATCGCCAGCAACTTCTTCTGCTCCAGCACCGAGATCGACAGCTTGGTCTCCG
CCAACAGTTCGCGGAAGTTGGTGTGGGTGATCACAATGACGTCGTCGGTGTGCTCCTTCTGCTCG
GTCTCCTCCAGCGCTGCTTTCTCCTGGTAGAGCTGCTGGATCTGGTTGGCGATCTTGACCCGGTC
GGCGGGCCGGAGCTTGGCGTGGGCGAGCTGCTCCAGGTTGACCCGGAAGAACTCGTAGTTGGCGT
CGTCCTTGGGCCCGTCGCCCTGGGCCTGGGCCTCGGTGGCCGCCA
Found at i:93697 original size:10 final size:10
Alignment explanation
Indices: 93682--93714 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
93672 ACTACCAACA
93682 AACCCCTACC
1 AACCCCTACC
93692 AACCCCTACC
1 AACCCCTACC
93702 AACCCCTACC
1 AACCCCTACC
93712 AAC
1 AAC
93715 AAATTTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.33, C:0.58, G:0.00, T:0.09
Consensus pattern (10 bp):
AACCCCTACC
Left flanking sequence: Indices 93182 -- 93681
CCGCACTGTTTGTTTACGCATTTGCAATTGGGCGGTACGACTATTGACCTTCGAAGAGTCTTGTA
TTGTTCACCAATTTGTAAGATCGAAGCTCGAACAGCTCCAACACTTTTCTCAATATGCGAGTAAA
CGTCGAGACAAGATAAGACGTGTATTTTAAGACTCTTGTGCTGACGCTGAAATCATTTGTAACAC
GATGTTTGTACCAATACAAGTTCTGTTCTAAATTCTCCTATTTTTCCAGTTATCTCAGAATTTAT
TTCAAAGTCAGACCGGAAAAGTACGCAAATTGACTACCCAGTAAGTCAAACGAAGGTTTCCTCGG
AATCATAGGAGTCGGAAGTAATTGAGCCTACGGTGGTTGTTCATGGAGAACCTCCCAGCGAATCA
ATCTCGATCACCAAGCAGTTGATGATAAGCTTCTCATTTCGTGAGCTACCAACGAATTCACTACC
AAAATTCGCTACCAACAAACCACTAGGAACAAACCACTACCAACA
Right flanking sequence: Indices 93715 -- 94214
AAATTTATCAACTGGTCACTCAAGTATCTTCTTGAGGTTTTCAAGTACCTTCGAGATTCTCCACT
CTCTACGACTATTCTCTATAACGTACATTCTATAATCACATTAACGTGGTGCGTCCGCCAATCTC
GTTACTGGCCGACCCGTCGGGCATGTTCCCGTCGCGGCCCAGCACAAACTTGTGGTAGATCGCCA
GCAACTTCTTCTGCTCCAGCACCGAGATCGACAGCTTGGTCTCCGCCAACAGTTCGCGGAAGTTG
GTGTGGGTGATCACAATGACGTCGTCGGTGTGCTCCTTCTGCTCGGTCTCCTCCAGCGCTGCTTT
CTCCTGGTAGAGCTGCTGGATCTGGTTGGCGATCTTGACCCGGTCGGCGGGCCGGAGCTTGGCGT
GGGCGAGCTGCTCCAGGTTGACCCGGAAGAACTCGTAGTTGGCGTCGTCCTTGGGCCCGTCGCCC
TGGGCCTGGGCCTCGGTGGCCGCCAACTTGACGTGGACCGCCTTG
Found at i:95124 original size:9 final size:9
Alignment explanation
Indices: 95110--95153 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
95100 GAAGTAGTAG
95110 CACCACTAC
1 CACCACTAC
95119 CACCACTAC
1 CACCACTAC
*
95128 CACCATCACTAG
1 CA-C--CACTAC
95140 CACCACTAC
1 CACCACTAC
95149 CACCA
1 CACCA
95154 TCTCTGGCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 21 0.70
10 1 0.03
11 1 0.03
12 7 0.23
ACGTcount: A:0.34, C:0.52, G:0.02, T:0.11
Consensus pattern (9 bp):
CACCACTAC
Left flanking sequence: Indices 94610 -- 95109
CTCACGCACCAGCTGCTCGGACGCACCGATGTACTTGTTGAGGATCTCCGGGCCCTTGATCGAGA
TGAAGTTGAGCCCGCACTGGCCCGCCACCGCCAGCGCCAAGAGGGTCTTGCCGCAACCGGGGTAG
CCGTAGAGCAAGATGCCCAGCCGCAACCGCAACGGGCACAGCGAGAAGATGGGGGCGTACTTGGT
GGGCCACTCGAGCGTCTCCAAGAGCACGTTTTTCGCTTCGGTGAGGCCTCCGATGTCCAGCCAGT
TGGTGCCCAGTTTCTGGAGCTTGACGCCGCGGAGGTTGGACGGGGTGTACCCCTCGAGGCAGCGG
GTGAGGTTGGCGCGGGATGCTGTTACCGAGACGGTGCTCGCGGTGTCGGGGGCGGTGGCCAGCGA
GGCCCCGGCCGCGGACTCGAACTCGCGACCCGTCGTGTGGTTACCGGCGGTCGTGTGGCTACCGG
TAAGTGTGGTGTCGTTCAGGGTCGTGCCGTTACCAGAAGTAGTAG
Right flanking sequence: Indices 95154 -- 95653
TCTCTGGCTCCACTAGCACCATCTCTAGCACCATCACTACCCCCTTCTATAGCCTTCACACCACT
CCTGGTTTTCTCATTCACCTGGTCAAACAACGCCTCTTGGTACAACCGGTCGCTCAAAATCTTCA
AGTCATTCGGCAAGTACCCCTCGGTCTCCGTCACCATGTCCATAATATCAAAGTCCACCCCACAC
CGCAAGTGCTCGGCCAAGTAGCGCCCCAAGATCTCCGCCCGCATCTGCTTGTCGGGCGCCGCCAA
GTGCTCAAAGTTCTCCACAAGGTGGCTCTGGAACAACAACTTGTTCAACAGCTCCTTCAGCTGCG
CCAGCGCCAACACACAAAGGTTCAGGTTGCGCTGGGCGTGGATCCGCTCCACCTGGCCCACAAGA
AACTCGGTGAGCTGCACCAGCTTCAGGCTGTCGCCCTGCTCCTGCTCGGCCGCAAGCACCTTGTC
CAAGTTGTCGAGCACGAGCACCGCGGGCTTGTGCCACGAGCACAG
Found at i:95137 original size:21 final size:21
Alignment explanation
Indices: 95113--95155 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
95103 GTAGTAGCAC
95113 CACTACCACCACTACCACCAT
1 CACTACCACCACTACCACCAT
*
95134 CACTAGCACCACTACCACCAT
1 CACTACCACCACTACCACCAT
95155 C
1 C
95156 TCTGGCTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.51, G:0.02, T:0.14
Consensus pattern (21 bp):
CACTACCACCACTACCACCAT
Left flanking sequence: Indices 94613 -- 95112
ACGCACCAGCTGCTCGGACGCACCGATGTACTTGTTGAGGATCTCCGGGCCCTTGATCGAGATGA
AGTTGAGCCCGCACTGGCCCGCCACCGCCAGCGCCAAGAGGGTCTTGCCGCAACCGGGGTAGCCG
TAGAGCAAGATGCCCAGCCGCAACCGCAACGGGCACAGCGAGAAGATGGGGGCGTACTTGGTGGG
CCACTCGAGCGTCTCCAAGAGCACGTTTTTCGCTTCGGTGAGGCCTCCGATGTCCAGCCAGTTGG
TGCCCAGTTTCTGGAGCTTGACGCCGCGGAGGTTGGACGGGGTGTACCCCTCGAGGCAGCGGGTG
AGGTTGGCGCGGGATGCTGTTACCGAGACGGTGCTCGCGGTGTCGGGGGCGGTGGCCAGCGAGGC
CCCGGCCGCGGACTCGAACTCGCGACCCGTCGTGTGGTTACCGGCGGTCGTGTGGCTACCGGTAA
GTGTGGTGTCGTTCAGGGTCGTGCCGTTACCAGAAGTAGTAGCAC
Right flanking sequence: Indices 95156 -- 95655
TCTGGCTCCACTAGCACCATCTCTAGCACCATCACTACCCCCTTCTATAGCCTTCACACCACTCC
TGGTTTTCTCATTCACCTGGTCAAACAACGCCTCTTGGTACAACCGGTCGCTCAAAATCTTCAAG
TCATTCGGCAAGTACCCCTCGGTCTCCGTCACCATGTCCATAATATCAAAGTCCACCCCACACCG
CAAGTGCTCGGCCAAGTAGCGCCCCAAGATCTCCGCCCGCATCTGCTTGTCGGGCGCCGCCAAGT
GCTCAAAGTTCTCCACAAGGTGGCTCTGGAACAACAACTTGTTCAACAGCTCCTTCAGCTGCGCC
AGCGCCAACACACAAAGGTTCAGGTTGCGCTGGGCGTGGATCCGCTCCACCTGGCCCACAAGAAA
CTCGGTGAGCTGCACCAGCTTCAGGCTGTCGCCCTGCTCCTGCTCGGCCGCAAGCACCTTGTCCA
AGTTGTCGAGCACGAGCACCGCGGGCTTGTGCCACGAGCACAGCT
Found at i:95166 original size:21 final size:21
Alignment explanation
Indices: 95119--95186 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 21
95109 GCACCACTAC
*
95119 CACCACTACCACCATCACTAG
1 CACCACTACCACCATCTCTAG
*
95140 CACCACTACCACCATCTCTGG
1 CACCACTACCACCATCTCTAG
* *
95161 CTCCACTAGCACCATCTCTAG
1 CACCACTACCACCATCTCTAG
95182 CACCA
1 CACCA
95187 TCACTACCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.28, C:0.47, G:0.07, T:0.18
Consensus pattern (21 bp):
CACCACTACCACCATCTCTAG
Left flanking sequence: Indices 94619 -- 95118
CAGCTGCTCGGACGCACCGATGTACTTGTTGAGGATCTCCGGGCCCTTGATCGAGATGAAGTTGA
GCCCGCACTGGCCCGCCACCGCCAGCGCCAAGAGGGTCTTGCCGCAACCGGGGTAGCCGTAGAGC
AAGATGCCCAGCCGCAACCGCAACGGGCACAGCGAGAAGATGGGGGCGTACTTGGTGGGCCACTC
GAGCGTCTCCAAGAGCACGTTTTTCGCTTCGGTGAGGCCTCCGATGTCCAGCCAGTTGGTGCCCA
GTTTCTGGAGCTTGACGCCGCGGAGGTTGGACGGGGTGTACCCCTCGAGGCAGCGGGTGAGGTTG
GCGCGGGATGCTGTTACCGAGACGGTGCTCGCGGTGTCGGGGGCGGTGGCCAGCGAGGCCCCGGC
CGCGGACTCGAACTCGCGACCCGTCGTGTGGTTACCGGCGGTCGTGTGGCTACCGGTAAGTGTGG
TGTCGTTCAGGGTCGTGCCGTTACCAGAAGTAGTAGCACCACTAC
Right flanking sequence: Indices 95187 -- 95686
TCACTACCCCCTTCTATAGCCTTCACACCACTCCTGGTTTTCTCATTCACCTGGTCAAACAACGC
CTCTTGGTACAACCGGTCGCTCAAAATCTTCAAGTCATTCGGCAAGTACCCCTCGGTCTCCGTCA
CCATGTCCATAATATCAAAGTCCACCCCACACCGCAAGTGCTCGGCCAAGTAGCGCCCCAAGATC
TCCGCCCGCATCTGCTTGTCGGGCGCCGCCAAGTGCTCAAAGTTCTCCACAAGGTGGCTCTGGAA
CAACAACTTGTTCAACAGCTCCTTCAGCTGCGCCAGCGCCAACACACAAAGGTTCAGGTTGCGCT
GGGCGTGGATCCGCTCCACCTGGCCCACAAGAAACTCGGTGAGCTGCACCAGCTTCAGGCTGTCG
CCCTGCTCCTGCTCGGCCGCAAGCACCTTGTCCAAGTTGTCGAGCACGAGCACCGCGGGCTTGTG
CCACGAGCACAGCTGCAACCACTTGAACAAGTGGGCCTTGGCCGG
Done.