Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold40
Parameters: 2 7 7 80 10 50 500
Length:  217640

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--321
153
2.1
153
95
0
562
19
30
26
23
1.98
283--360
39
2.0
38
97
2
147
25
39
17
15
1.89
130--514
192
2.0
191
97
1
743
20
31
24
23
1.98
1502--1564
27
2.3
27
88
0
90
41
25
19
14
1.89
26581--26605
13
1.9
13
100
0
50
20
0
48
32
1.50
40872--40940
18
3.8
18
92
0
120
23
21
46
8
1.79
41030--41109
36
2.2
36
86
0
115
31
22
23
22
1.99
41718--41770
12
4.4
12
95
0
88
20
18
35
24
1.95
52027--52100
39
2.0
38
84
7
98
39
24
31
5
1.78
62065--62090
3
8.7
3
100
0
52
0
34
30
34
1.58
64964--64993
15
2.0
15
100
0
60
33
40
20
6
1.78
112902--112941
14
2.8
14
92
3
62
40
10
40
10
1.72
146076--146136
27
2.3
27
82
0
77
4
29
37
27
1.78
153822--153849
13
2.2
13
100
0
56
7
14
42
35
1.73
155560--155617
16
3.6
16
83
0
80
20
13
27
37
1.91
155555--155617
32
2.0
32
90
0
99
19
14
28
38
1.90
156275--156304
11
2.7
11
94
0
51
6
26
43
23
1.78
159339--159380
18
2.3
18
87
4
57
40
4
47
7
1.52
164294--164322
14
2.1
14
100
0
58
13
20
13
51
1.75
175867--176004
9
15.3
9
86
0
177
0
36
3
60
1.15
175867--176005
18
7.7
18
94
0
224
0
35
4
59
1.17
181683--181730
19
2.7
17
78
12
51
31
35
22
10
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
189962--190032
12
6.1
12
85
6
92
30
2
42
23
1.69
189962--190028
22
3.0
22
80
8
80
31
2
43
22
1.68
190198--190237
16
2.5
16
87
0
53
17
25
12
45
1.83
190543--190609
22
3.0
22
91
4
109
20
41
0
37
1.53
195342--195428
20
4.0
22
83
7
81
41
0
57
1
1.06
195342--195408
23
3.0
22
80
6
73
41
0
56
1
1.08
195385--195443
8
8.4
8
77
21
53
35
0
64
0
0.94
195394--195435
12
3.8
12
76
23
56
38
0
61
0
0.96
195386--195447
20
3.1
20
97
0
115
37
0
62
0
0.95
198450--198486
18
2.1
18
89
0
56
5
32
37
24
1.78
199103--199169
15
4.5
15
92
3
109
1
22
44
31
1.62
199103--199182
30
2.7
30
90
0
124
1
22
46
30
1.60
199103--199182
15
5.3
15
89
0
106
1
22
46
30
1.60
199649--199706
27
2.1
27
87
6
82
10
8
51
29
1.65
199731--199800
21
3.3
21
85
0
104
2
22
37
37
1.69
199731--199810
21
3.8
22
69
18
64
2
21
37
38
1.67
200377--200418
21
2.0
21
90
0
66
11
30
21
35
1.90
200380--200467
18
4.7
18
80
4
95
11
32
19
36
1.87
204300--204349
11
4.5
11
92
0
82
10
2
62
26
1.38

Tables:   1

The End!