Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold40
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 217640
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:283 original size:153 final size:153
Alignment explanation
Indices: 5--321 Score: 562
Period size: 153 Copynumber: 2.1 Consensus size: 153
1 CACC
* *
5 TGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTTGACGTGACCACCGA
1 TGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTCGACGTCACCACCGA
70 CTCCAACGGGTCCTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGCCCTG
66 CTCCAACGGGTCCTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGCCCTG
*
135 AGTGTACTGAGTACACCACCACT
131 AGTGCACTGAGTACACCACCACT
** *
158 TGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTCGACGTCATTACTGA
1 TGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTCGACGTCACCACCGA
* *
223 CTCTAACGGGTCTTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGCCCTG
66 CTCCAACGGGTCCTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGCCCTG
288 AGTGCACTGAGTACACCACCACT
131 AGTGCACTGAGTACACCACCACT
311 TGGACCACCAC
1 TGGACCACCAC
322 NCCTGAGTGC
Statistics
Matches: 156, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 156 1.00
ACGTcount: A:0.19, C:0.31, G:0.26, T:0.24
Consensus pattern (153 bp):
TGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTCGACGTCACCACCGA
CTCCAACGGGTCCTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGCCCTG
AGTGCACTGAGTACACCACCACT
Left flanking sequence: Indices 1 -- 4
CACC
Right flanking sequence: Indices 322 -- 821
NCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTG
GCTCGGGTATTGTCGACGTCATTACTGACTCCAACGGGTCTTTGGTCACTTCGACGTCTTCTTAC
CCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACCGG
TGCTGACGGGAAGCCTACTACGGGAACTGGGATCGTTGATGTCACCACAGACCTGCACGGGTCCT
TGGTTACAACCACGTCGGTCGATGTGTTGCCTTGCCCTGTGTGTACGGCGTACCCCACTACTTGG
ACGACTACCGGTGCTGATGGCAAGCCCACTGTCGGGACAGGGATTGTTGATGTGACGACCAACTC
ACAAGGCTCCATTGTTACTTCGACCAAGTCTCAAGGAGGATGCCTCGTGTGCACTCAGTATACCA
CTACGTGGACCTCCTCTGGTGACAACGGCCGCCCCACCACCGGTG
Found at i:338 original size:39 final size:38
Alignment explanation
Indices: 283--360 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 38
273 AGACTGGTTG
283 CCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
1 CCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
321 CNCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
1 C-CCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
360 C
1 C
361 TGGTGCTGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.26, C:0.40, G:0.18, T:0.15
Consensus pattern (38 bp):
CCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
Left flanking sequence: Indices 1 -- 282
CACCTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTTGACGTGACCA
CCGACTCCAACGGGTCCTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGC
CCTGAGTGTACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGG
CTCGGGTATTGTCGACGTCATTACTGACTCTAACGGGTCTTTGGTCACTTCGACGTCTTCTTACC
CCGTGCAAGGCGAGACTGGTTG
Right flanking sequence: Indices 361 -- 860
TGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTCGACGTCATTACTGACTCCAACGGGT
CTTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAG
TACACCACCACTTGGACCACCACCGGTGCTGACGGGAAGCCTACTACGGGAACTGGGATCGTTGA
TGTCACCACAGACCTGCACGGGTCCTTGGTTACAACCACGTCGGTCGATGTGTTGCCTTGCCCTG
TGTGTACGGCGTACCCCACTACTTGGACGACTACCGGTGCTGATGGCAAGCCCACTGTCGGGACA
GGGATTGTTGATGTGACGACCAACTCACAAGGCTCCATTGTTACTTCGACCAAGTCTCAAGGAGG
ATGCCTCGTGTGCACTCAGTATACCACTACGTGGACCTCCTCTGGTGACAACGGCCGCCCCACCA
CCGGTGCCGGCATTATCGACGTGACCACTGACGCCAACGGGAACG
Found at i:458 original size:192 final size:191
Alignment explanation
Indices: 130--514 Score: 743
Period size: 192 Copynumber: 2.0 Consensus size: 191
120 AGACTGGTTG
*
130 CCCTGAGTGTACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTG
1 CCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTG
*
195 GCTCGGGTATTGTCGACGTCATTACTGACTCTAACGGGTCTTTGGTCACTTCGACGTCTTCTTAC
66 GCTCGGGTATTGTCGACGTCATTACTGACTCCAACGGGTCTTTGGTCACTTCGACGTCTTCTTAC
260 CCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
131 CCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
321 CNCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACT
1 C-CCTGAGTGCACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACT
386 GGCTCGGGTATTGTCGACGTCATTACTGACTCCAACGGGTCTTTGGTCACTTCGACGTCTTCTTA
65 GGCTCGGGTATTGTCGACGTCATTACTGACTCCAACGGGTCTTTGGTCACTTCGACGTCTTCTTA
451 CCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
130 CCCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
513 CC
1 CC
515 GGTGCTGACG
Statistics
Matches: 191, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
191 2 0.01
192 189 0.99
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.23
Consensus pattern (191 bp):
CCCTGAGTGCACTGAGTACACCACCACTTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTG
GCTCGGGTATTGTCGACGTCATTACTGACTCCAACGGGTCTTTGGTCACTTCGACGTCTTCTTAC
CCCGTGCAAGGCGAGACTGGTTGCCCTGAGTGCACTGAGTACACCACCACTTGGACCACCA
Left flanking sequence: Indices 1 -- 129
CACCTGGACCACCACTGGTGCTGATGGTAAGCCCACGACTGGCTCGGGTATTGTTGACGTGACCA
CCGACTCCAACGGGTCCTTGGTCACTTCGACGTCTTCTTACCCCGTGCAAGGCGAGACTGGTTG
Right flanking sequence: Indices 515 -- 1014
GGTGCTGACGGGAAGCCTACTACGGGAACTGGGATCGTTGATGTCACCACAGACCTGCACGGGTC
CTTGGTTACAACCACGTCGGTCGATGTGTTGCCTTGCCCTGTGTGTACGGCGTACCCCACTACTT
GGACGACTACCGGTGCTGATGGCAAGCCCACTGTCGGGACAGGGATTGTTGATGTGACGACCAAC
TCACAAGGCTCCATTGTTACTTCGACCAAGTCTCAAGGAGGATGCCTCGTGTGCACTCAGTATAC
CACTACGTGGACCTCCTCTGGTGACAACGGCCGCCCCACCACCGGTGCCGGCATTATCGACGTGA
CCACTGACGCCAACGGGAACGTGATCACGTCAACAATGCAGTTGCCGTACACGGTGACCGCGTCG
TGCCATGTGTGCGAGACCAAGCCCACGGTGGTGACCACGGTCATCGACTCTACCGTCACCATTAC
CCAAGGGTGTGACGTCATCGTGACCACCAACGCCGACGGGTCTCT
Found at i:1542 original size:27 final size:27
Alignment explanation
Indices: 1502--1564 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
1492 CTGCCACTCT
* * *
1502 AGCACTCAACAACGAGTGCTTAGAACG
1 AGCACTCAAAAACGAGTACTTAGAACA
*
1529 AGCACTCAAAAACGGGTACTTAGAACA
1 AGCACTCAAAAACGAGTACTTAGAACA
1556 AGCACTCAA
1 AGCACTCAA
1565 GATCACTCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.14
Consensus pattern (27 bp):
AGCACTCAAAAACGAGTACTTAGAACA
Left flanking sequence: Indices 1002 -- 1501
CCGACGGGTCTCTCTACACCACCACCGAGTACGACGGCGTACAATCGACAGTTGCGGGTTACTCC
GCTGTTTCTTCAGGTGACGTGGCCCTTTCTCTGGCGGTGGTGATTGCCTCCACCGTGGCTGGCGA
TGCCACCACGTACACTCTTCCCTTGGGGACCACCACCATTCCTGAGGCCCAAGTTTCTTCGTACC
TCGGCGCCAACCTTCCGGGTGCCGTTGTTTCTTCCACCAACGCCGACGGGGATGTTGTTGTTTCC
ACGGTGGCGCCGGTTTCTCCTGACACGACGTCGCTGCCTTCGATTGTTGAAGGAGGCGCGTCGTC
GATCACCCGCTCCAAGATTTCGGTCGTGGTTGCGGGTATCGTTGCTGTTTTGCTTTTGTAAGGCG
TTTATACCCCGTTGTTTCGTTTATACGTGTTAATACACCCTTTGTATGATAACCACTGTGTAGGT
CTCGTGCAGACGCGTCGCAGGCTGGATCGATTGGCCTGCCACTCT
Right flanking sequence: Indices 1565 -- 2064
GATCACTCACACTGATACACTACTTGGTATACACTCTGCCTTATCTCTACCACGCAAACACTTTG
AACGCCTCTTTTCAGCTCCACCAAACTCCGCCCAAATCCTCCCAACTCCACCAAAACCCACCCAG
GACCATTCACCTCCCCATTATAGCGTAGAAGGACTCAACCAGTGAACCCACACGCCTTACCGCGC
CACCTCATCCGTTGCGCCACCCGTCCACCTCCTTGGACCACATCCGGTTGCGAGCCCGCATAGTT
CCAGGCACTACAACAACCCGCGACCACGATAACGGCAGCGCTACCCACCCCCGCCATGTCGACCT
GTGCGTACAAACGGACACTGATCATCGGGCGTGGCAAGTTTGGCATTGTCTACAAGGGCCACCAC
AAGCAGACCAAGCAGAATGTCGCCATCAAAGTGCTCAACCTCGACACCGAGGAGGACGAGATCAC
CGACGTGCAACAGGAGATCCAGTTTTTGGCAGAGCTCCGCAACGT
Found at i:26597 original size:13 final size:13
Alignment explanation
Indices: 26581--26605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26571 GGTAGGCGAG
26581 GGTGGTAGATGTA
1 GGTGGTAGATGTA
26594 GGTGGTAGATGT
1 GGTGGTAGATGT
26606 GGGTAGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.48, T:0.32
Consensus pattern (13 bp):
GGTGGTAGATGTA
Left flanking sequence: Indices 26081 -- 26580
GGGCGTGCCTTGCCCTTCAAATGCTTGATCTTTTCGAGCTCGTCGGTGATGGTCTCAAGGGCCGG
CTCAGCCGGGGCCGACGCCTGTTTGGGCTTGGCGTCCTCGGTGGGGGCAGGCGCGGCCGCAGGTT
TCTCCTCGGACTCCGACAGCTCGGGAACAGGCTTTTGTTCGTCGCTGTCGTCCGACTCGGGTGCC
TTGGCCGCGGCCTCTTCCTTGGCCTTTTGGGCGCGGTCATCGCCGTTCAACATGTTGACGATGGA
GTGGCGTTGGTGCACGGTGGGTGGAACGGCGTCCTGGCCCTTCGCACCGTCAGGGGGTGAGTCAT
CGTTGAGTAGACCCCCGAGGTTCATCGTGTGTGGTTTAATGAGTGGGTCGGGTACAAACAAATGA
GTCGCGGTGGAGGTGGTGTTGGTGCGAAAAAAGGCGAGAAGGAAGACAGGTGGAGGAGACGGTGG
AGGAGGGGTGGGTACACGGTAGGTGTGGTTTTGGTGGTAGGCGAG
Right flanking sequence: Indices 26606 -- 27105
GGGTAGTTATAGTTTGGTGAAGCTCAACGTGGAAGGTGTGGTGTGGTTAAGTAGGTGTAAATCTC
GTGTTGGTGGAGCGATGGTCTAGACCGAGAGCTCAGTTTGAAGTGGTTCGCTTACCCACGGGTTA
CTACGTACGGAGGGGGAAGTCTGTCTCCATTCTCACCGAAGCGTGCTAGTGACAGACGTATACTT
TGTCCCAGTTGTAATTACAACCTTCTTCTGTCAACCGGTAGCAACAGAGGAGGGTTCTACTAAGC
AACCACCCGTACATCTCCCCAAATACAGCCCCCTTCGTCACCGACACAACCCTACAGTACCACAG
ACACACCACCACACCCTTTATCCCCCACCACACCATCCTCTCGTCCCATTTTCCACTCCACCACG
TACCGAAAAACCCAACCCGGCTCTTCCCCACATCACACCCCACGACCCAGCCCCACGACCCCTTC
CCACTCCACCCACCACCCTCAGCCTGTCCCCCACGGGATCGCTCC
Found at i:40946 original size:18 final size:18
Alignment explanation
Indices: 40872--40940 Score: 120
Period size: 18 Copynumber: 3.8 Consensus size: 18
40862 CACAGGCGCC
40872 GGACCAGCAGACGGGTTG
1 GGACCAGCAGACGGGTTG
* *
40890 GGGCCAGCAGAAGGGTTG
1 GGACCAGCAGACGGGTTG
40908 GGACCAGCAGACGGGTTG
1 GGACCAGCAGACGGGTTG
40926 GGACCAGCAGACGGG
1 GGACCAGCAGACGGG
40941 ACGGGAGCCT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.23, C:0.22, G:0.46, T:0.09
Consensus pattern (18 bp):
GGACCAGCAGACGGGTTG
Left flanking sequence: Indices 40372 -- 40871
GGGGCGGCTACCCCGGTCCAGCTACTACATTCGCCACAATTGTGATCGGTTGCTGCATAGGCTTG
ACCAGACCGTTTGCGCACAACCGAAATAGCAATCGATCTCGAGAAAGGAAGCTAGACCCGACCGC
CCCGGAGTTGCTCGACGGGGTTATCGTGCCCCCACAGCCAACGGTGAGTTTGACAGCATACACAT
TGCGTTGCGTTGACTTTGACAGCAAGATTGCTCCCGCGTATCGTTGGCTGACAATCGTTTCCTGT
GTCAGCGGACCAAACGTCGTCATACTACAGCGCGCGTACGCGTAACGGGTTAAAGGTCGAAAAGT
GTATTACCGAAAGGGAACAAAAGTAACTAAACGAAAGTAGAATCACAACAACCCGGCGACCAAGG
CGAGGGCACCGGCGACCTGGGGCAAGCCGTAGTTGGCAGCAGCACCCGAGTAGGTCGAGATCACC
GCGGGGCCCGTCGTAGGCACAGGAGCCTTGGATGGCACAGGCGCC
Right flanking sequence: Indices 40941 -- 41440
ACGGGAGCCTTGGTGGGGTTCACGGGACTGGTGACCACGGTGACACCGGAAGGAGGAACCACGGG
GGCATTCGAGGGCTTGGTGTCGGGACCACCAGTAGTAATGGGATTCAAAGTGACAGTCTTACCAC
TAGAAGTAATGGGGTTCACAGTGACAGTCTTGCCACCAGCACCAGGGGAAGTGGGCGCAGGCTTG
ACCGTGGGGTATAAGGTGATCGTGGTGGGGGCAGGTGGGGGCACACCCGTGGTCGGGACCACGCA
GTGGTGGTCGGTGCACTTCTCCACAGGCAAGGTGACGGTAACGGTAGGCTTGGGGGGAGCACACT
TGTCCTCGTGGCAAACCACGTAGACGGTAGTCTTGGCCGAGGGGGCCGGGTGCTGGACACACTGG
GCAGCTCCACACTTGACGGTGACCGTCACCGTGGGGGCACAGGCGTTGCAATCGTCGGTGGGATT
GCCGTGCACGGTGGTCACACCAGTCTCGGTGGCGGAGTTAACCCC
Found at i:41079 original size:36 final size:36
Alignment explanation
Indices: 41030--41109 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
41020 TGGTGTCGGG
*
41030 ACCACCAGTAGTAATGGGATTCAAAGTGACAGTCTT
1 ACCACCAGAAGTAATGGGATTCAAAGTGACAGTCTT
* * *
41066 ACCACTAGAAGTAATGGGGTTCACAGTGACAGTCTT
1 ACCACCAGAAGTAATGGGATTCAAAGTGACAGTCTT
*
41102 GCCACCAG
1 ACCACCAG
41110 CACCAGGGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.23
Consensus pattern (36 bp):
ACCACCAGAAGTAATGGGATTCAAAGTGACAGTCTT
Left flanking sequence: Indices 40530 -- 41029
CCCCCACAGCCAACGGTGAGTTTGACAGCATACACATTGCGTTGCGTTGACTTTGACAGCAAGAT
TGCTCCCGCGTATCGTTGGCTGACAATCGTTTCCTGTGTCAGCGGACCAAACGTCGTCATACTAC
AGCGCGCGTACGCGTAACGGGTTAAAGGTCGAAAAGTGTATTACCGAAAGGGAACAAAAGTAACT
AAACGAAAGTAGAATCACAACAACCCGGCGACCAAGGCGAGGGCACCGGCGACCTGGGGCAAGCC
GTAGTTGGCAGCAGCACCCGAGTAGGTCGAGATCACCGCGGGGCCCGTCGTAGGCACAGGAGCCT
TGGATGGCACAGGCGCCGGACCAGCAGACGGGTTGGGGCCAGCAGAAGGGTTGGGACCAGCAGAC
GGGTTGGGACCAGCAGACGGGACGGGAGCCTTGGTGGGGTTCACGGGACTGGTGACCACGGTGAC
ACCGGAAGGAGGAACCACGGGGGCATTCGAGGGCTTGGTGTCGGG
Right flanking sequence: Indices 41110 -- 41609
CACCAGGGGAAGTGGGCGCAGGCTTGACCGTGGGGTATAAGGTGATCGTGGTGGGGGCAGGTGGG
GGCACACCCGTGGTCGGGACCACGCAGTGGTGGTCGGTGCACTTCTCCACAGGCAAGGTGACGGT
AACGGTAGGCTTGGGGGGAGCACACTTGTCCTCGTGGCAAACCACGTAGACGGTAGTCTTGGCCG
AGGGGGCCGGGTGCTGGACACACTGGGCAGCTCCACACTTGACGGTGACCGTCACCGTGGGGGCA
CAGGCGTTGCAATCGTCGGTGGGATTGCCGTGCACGGTGGTCACACCAGTCTCGGTGGCGGAGTT
AACCCCAGTGTTGGTCTCATCGATAATGCTGGAGCGAGTGGTCGAGCCGGTACCAGAGCCACCGT
CGGTAGCGGAGTTGGTGCCGGTGTTGCCGCCAGAGCCAGTAGCGGTGTTCGAGTTGTTGCCATCA
GTGGCCGAGTTCGTGCCAGTGTTCGTAGCAGAACCAGTGTCAGTG
Found at i:41735 original size:12 final size:12
Alignment explanation
Indices: 41718--41770 Score: 88
Period size: 12 Copynumber: 4.4 Consensus size: 12
41708 GGTAGCCGAC
* *
41718 CCAGTGTTAGAA
1 CCAGTGTTGGAG
41730 CCAGTGTTGGAG
1 CCAGTGTTGGAG
41742 CCAGTGTTGGAG
1 CCAGTGTTGGAG
41754 CCAGTGTTGGAG
1 CCAGTGTTGGAG
41766 CCAGT
1 CCAGT
41771 CTCAGTAGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.21, C:0.19, G:0.36, T:0.25
Consensus pattern (12 bp):
CCAGTGTTGGAG
Left flanking sequence: Indices 41218 -- 41717
TCTCCACAGGCAAGGTGACGGTAACGGTAGGCTTGGGGGGAGCACACTTGTCCTCGTGGCAAACC
ACGTAGACGGTAGTCTTGGCCGAGGGGGCCGGGTGCTGGACACACTGGGCAGCTCCACACTTGAC
GGTGACCGTCACCGTGGGGGCACAGGCGTTGCAATCGTCGGTGGGATTGCCGTGCACGGTGGTCA
CACCAGTCTCGGTGGCGGAGTTAACCCCAGTGTTGGTCTCATCGATAATGCTGGAGCGAGTGGTC
GAGCCGGTACCAGAGCCACCGTCGGTAGCGGAGTTGGTGCCGGTGTTGCCGCCAGAGCCAGTAGC
GGTGTTCGAGTTGTTGCCATCAGTGGCCGAGTTCGTGCCAGTGTTCGTAGCAGAACCAGTGTCAG
TGCCCGAGTTGATGCCAGAGAAAGAGTCGCTGCCGGTGCCAGTAGCCGACCCAGTGTTGGAGCCG
GTCTCGGTGCCAGTAACGCTGCCAGTGTTGGAGTCGGTAGCCGAC
Right flanking sequence: Indices 41771 -- 42270
CTCAGTAGCAGAATTGGTACCAGTGGCAGTGTCAGTGGCAGAACCAGTGTTGGACCCGGTGTCAG
TCTCAGTGGCAGAGTTGGTGCCAGTGTTGGTGTCAGTAGCAGAGTCAGTGGGGGTGGCTGTCTCG
GTGGAGGACGACGACGACGCGGTCGAGGTGGGCGGGGTCACAGTAGAGGTACACTCACCACAGTT
GGCGGGGGGGTCAGAGGAAGGAGGAGCACCGTTGTATCTGATAGCATTGAGCAAGGGCACGCTGA
CGCCAATGAACAAGTGGGACACCACCTCGAAGTTGTCCTCGTTGTACCCGGGTCCGATCAACACC
TGCTGAGACAAGGTGTTCAAGGGACCGCCGTAGAGAGTCAAGATACCGGTACCAGCATCGTACTC
GTAGTTGAAAATGGGGGTGGTCATACCGATGATGTTCCCGTTACCAAAGCCTGCCACAGTGTAAG
GGTTGGCAGCGGTGACCGAAGTCAACAACAACTGGGCGCTGGGGT
Found at i:52067 original size:36 final size:38
Alignment explanation
Indices: 52027--52100 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 38
52017 GACTCCAAGT
*
52027 CTGACGACAAGGAC-GG-CGATGACGACAAGAAGACCA
1 CTGACGACAAGAACAGGACGATGACGACAAGAAGACCA
* *
52063 CTGACGGCAAGAACAAGGACGGTGACGACAAGAAGACC
1 CTGACGACAAGAAC-AGGACGATGACGACAAGAAGACC
52101 GACTCCAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 12 0.38
38 2 0.06
39 18 0.56
ACGTcount: A:0.39, C:0.24, G:0.31, T:0.05
Consensus pattern (38 bp):
CTGACGACAAGAACAGGACGATGACGACAAGAAGACCA
Left flanking sequence: Indices 51527 -- 52026
CTCGGTCATTGCTGCCGACTCCGAGTCTAAGGACGCTAAGGAGGGTTCCACCAAGGACGAGGAGG
TTGTCACCCCCACCAACACCGCCAAGTCGGTCGCTGTCGAGACCATCTCCGGTGAGGAGGATGCC
ATCACCGTCACCGTTGACCCTACTGGCACTGGTGTTGACATCAACCAGTTCTCCGCCTTGTACAA
CGGCCCTTACTCCTCCGACATGGTTTCCTACGCTCTGTACCTCGCTGGTGTTGGTTTCGATGCCT
CCAAGATTGAGCTGATGTTGACCAAGGCTTACCGTTACGGCTCTGACCAGATCCAGGACCAGTCC
TCGTACGACAGTGCCTTGTCCCAGTGGGTCATTGTCCAGGATGCTGACGTGTCTGACCGTGCCAC
CAGATCTTACTCCTTCAAGCCCGAGGAGACTGAGTTGATGACTTTCTCTGACGAGGAGGCCGCCT
CGAGATACTTGGCCACCCACAAGGAGGGCGACGACGACTCCAAGT
Right flanking sequence: Indices 52101 -- 52600
GACTCCAAGGACGGTGACAAGTCCAAGTCCGACGGTGGTGCTGACTCCACTGACTCCAAGTCGGA
GAAGGACGGTGCTATGTCGTTTGCTGCCCCCATCGGTGCCGCTCTCGGTGCCATTGCCGTGGCTT
TGTTGTAAGTGGACTAGACGCCACTAAACTTTGAGCTAGCGCCCTGTTTATGGCAGGTCAGCTGC
TTCCGTGTTTTATACCTATGGATTGGGTTACTTAATCATAATAATGAATAATGATAGAATTATCG
TAGAACCATGCGATGGTTGCCATATATACCTATTATCCGTCCTAGCGGATGAACTTGAAGTACAC
TACCAACATCAAGAACAACGACACCCCACCAATGACGGCGTACTGCTTGATCATTGCGTCTAGAT
TGATGCGCTGGGCGCGCTTCCGGTATTTGAGAGAGTCGCTCTTCAACAGAGATGACAAGTCCGAC
ATTTTGTCCAACAGATCCCCCCGATACAACAAGTCTTCGATGTTC
Found at i:62071 original size:3 final size:3
Alignment explanation
Indices: 62065--62090 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
62055 CGGCGTGGGC
62065 TCG TCG TCG TCG TCG TCG TCG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TC
62091 CACCGGCGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.31, T:0.35
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 61565 -- 62064
AGTAGTGCAACTCGGCCTGCGACGGGTGCTGGCGCGGCACCCGCACCCGGATCGCCTCCGGCTGG
CGCAACAGCGGGTTCAGGTACTCGCTGGCCTTGTCCTCGTCGTCGACAACCGGCGGTTGCGCCCG
CACGGCCGCCGGGGTGGCTGGCGCGCTCACCGACCGCACCAGCGGGGTCACCAGGCGGTTGTAGC
GCTCCAAGATGTTCTCGAGGGTGTCCATGTTGTTGCGGCGCAAAAAGTCGTCCACCGACTCGCGC
TTGGGGTCCAACAGGTCGCGCTTGCGCTGGTCCTGCTCGTAGGCGGCCACCCGCGGCTTCAGCCC
CGTGGGATAGCGGTCCAAGTCGATGTAGTTGCCGTTGCCGTCCACCGGGTAGATGTAGGGCGCGC
CGGTGTGCGGGCGGCCCGCGGCGGTGGCCTGGGCGATGGCGGCGGCTGCGGCCGCGGCACTGGCG
GCGGCAGCTCCGTTGCGGTAGCGCGGCTGCAACGGCGGCGTGGGC
Right flanking sequence: Indices 62091 -- 62590
CACCGGCGGCTTGAACAGGTACACCGGCTGGCGCTGGACCTCGCGCACCGGGGTGGCCTGCTGGT
ACTCGGCGAGGTATTCGAGCGGCGCCGGCGCCGTCGCCTCTTCGGGAACGGCCACCTCGTTGCCA
AAGCCCTTTTTGTAGCTGTCGCTGTCGGACGGCGTCGCCGTGGCCACCAACTTGGCGTCGAACCC
CGGGCGGATCTCCACGCCGTAGCGCTCGTTGAACGAGAGCTCGGGCGGCGGGTGGTTGGGCGGCG
GGTAGAACAGCGCCTCGCTCGTCACCACCAGCTCCTCCTCGACGGCCGAACACGCGTCGTCGCGG
GTCCACCGCGGCGCGGGCACCGTGGCCAGCGCGGCGTCCAGCTCCAGCGTCACGTCGGTGATGGT
GTTGGTGTCGCTGAACAACGAGTCGCCGTCCTCTTCCTCCACCACCATGGTGCGGATGGGCCGTC
CGTGGCCCTCGCGTGCGGCGGCGGCCGCGGCTGCCCGCAGTTGGC
Found at i:64984 original size:15 final size:15
Alignment explanation
Indices: 64964--64993 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64954 CGTGGTGACA
64964 AAGCTCGCAGACACC
1 AAGCTCGCAGACACC
64979 AAGCTCGCAGACACC
1 AAGCTCGCAGACACC
64994 CGTGCCCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (15 bp):
AAGCTCGCAGACACC
Left flanking sequence: Indices 64464 -- 64963
CAGCCACGGCCGCGGGGGTCGGCGACAAATCAAAATAGCCGACAATGGCGAATGGGCTGGCCATC
CGTTGGGGCTTGGTCTCGACTCAAGTAGCTCGTAATTTACGACCCATTTACGTTGATTGACTTGC
AAGTGCAATTAGACCAATATGCTATCTCTGGTTTCAAACAGCTGTTGCATTCCCCTACAGATCTT
GATCAGGTGTACCTTGCATCCTGATGGCAGCGCAAAAGCAACGTGAATCCCGGTCCATACGCCGA
CACGAACTGACACGTACTGGTGTGGTTGAATTAGTAGACTACACGAACCGTCACTTGAGCGCGTT
CTTCATTTTGTAGCGATGGTACCCGACAGTGCTGGGGCAAATAGCTGAGTAGACTCAAGAGCCGC
ACGCACCGCTTGAGATTGTCCAAACCATAGAGTAGTGAAACCACCCAGGCTACAAGATGGGGTTA
CGAGAGGACACATTGCTTCTCCAATTGAAGAATTCCGTGGTGACA
Right flanking sequence: Indices 64994 -- 65493
CGTGCCCCCTCTGCACCGTCAATTGGGCGCAACGAAGAGTCCAGATACCCCGACGAGAAGGCGTT
TTACCATGGTGAAGCGCCGTGGGACCAAAAAACGGAGGGCCAGCGCACGAAGAAACGGGTATTGG
TGCCTGCAGTTGTCGCGCTTTCACTCTGTGCCTATTACGGAGTTCGCCACCTTTGTTGAAGACAC
AGCTATTCGCCGAGCAGAGACAAAACCCAGCATAACATGTTCTTATGACGACCATGAAACCCCTT
GTGACCGAGAACGCTTCCCCGGATTCTCTATCATGCCGTCCCTAACTCTGAGGACCACATTTATA
GAAGTCAAATTACATGCATGATAGAATCACATTGGTTAATTGTAGAGACAGCCAGACCGGACTGA
TCGGATACGATACTACAGACGAAAAGCTGCACAACACACCCATATTTTCAATAGATCGTTTGTCT
CGATGTCTTTTGTGTAGTATTGTAGCAAGCACGGCGCAAGTCTCC
Found at i:112926 original size:14 final size:14
Alignment explanation
Indices: 112902--112941 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
112892 AACATTGCGA
112902 GAAGCAGAGCAGTGT
1 GAAG-AGAGCAGTGT
112917 GAAGAGAGCAGTGT
1 GAAGAGAGCAGTGT
*
112931 GAAGAAAGCAG
1 GAAGAGAGCAG
112942 AACATGGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.40, C:0.10, G:0.40, T:0.10
Consensus pattern (14 bp):
GAAGAGAGCAGTGT
Left flanking sequence: Indices 112402 -- 112901
ACAAAATTTCTCATCGAGCCCACAGGTGTGGCACTGGTGGCGCAAGAAGGCACCTAACGACAAAT
CATATAAACCTCCTGCGATGGGGTGGCCCAAGTTGTCGAAAACGACGGGATTGGTGACTTGTTTG
GCACTGAGCCCCCGGATTTCCGGGTCGCTCATCACCCCAAAGTCGACACTGACAATCTCCGATCC
CACGGGTTTGCCAATATCCATCTTTGCTCTGGTTCTCTCTGATGGGTCAAAAAGGGTTTTTTCAT
TTCTTACGAATGCGATGGTTCCTCATCGCGCGTCACGTGACGCATCGGGCCAGATTAGGCAACAG
GCAACAGTCTAGTGTGAACAAACGAAACAGCGTGGTTGATGGTGTGGGGCTAGAGAATGGGGTCA
ATCAAACAGAAGAAATATATTGATGCGGAAAAGCACCCGTCGCGTACTTGCTCAGAGTCTTTGGA
GAGAGATTCAGTGGTATGGCAAAGCACGACGCTAAAACATTGCGA
Right flanking sequence: Indices 112942 -- 113441
AACATGGTTAATCCGTGAGTACACTACCAAAGAGATAAAAGTGGGGTGGCGTTTTATTTAAAAAA
AAGAGAGCCCACGCCCAGGTTCGAACTGGGGACCAACAGATTTGCAATCTGCTGCGCTACCACTG
CGCCACGTGTGCAACTCTGTAAAAAGTTAGTTCTGGGAAACTCATGATGGGAGGAGTGAAAGATC
AGGATTCGATTGCAAAAAGTTGGAAATACTACAACTAAAAGACGAGATTTACATTAACGTGCTTT
GAAGAGAACGAATTGAAAATGTTTCAGACTTATTTGCCTGCTAAACTTTTAATTTCAAAATTTCT
ATGTTTGGTCAACTGGTGCTCCGAAAGTATTTATGAGAGATTTGTAACTACGAACTATCAAGGGG
TCAATTAATTGGGTGCTTAAAGAGACTCTCATTATACCCAGTATGAGACAAACCTATTAATTGAG
CACACCGAGTCGCAATGTTTTCGGGGCCTCACAGATGACAATCCA
Found at i:146116 original size:27 final size:27
Alignment explanation
Indices: 146076--146136 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
146066 AGGCGGTGCT
* *
146076 TTTGGCCTGGCCCCTAGCGGTGGGGCC
1 TTTGGCCTGACCCCGAGCGGTGGGGCC
* * *
146103 TTTGGTCTGACCCCGAGCGGTGGTGCT
1 TTTGGCCTGACCCCGAGCGGTGGGGCC
146130 TTTGGCC
1 TTTGGCC
146137 AGTCTTCTGG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.05, C:0.30, G:0.38, T:0.28
Consensus pattern (27 bp):
TTTGGCCTGACCCCGAGCGGTGGGGCC
Left flanking sequence: Indices 145576 -- 146075
CCTTTGGCAGCTCGGGTTTTGGCGGTGCCACCAATGCCACGGGCTCGTCCGGCGGAGCGTTCGGT
TCCTCAGGTTTTGGCAGCAGTGGGTTTGGAGGGGCACCCACCGGGGGCGCTTTTGGCAATTCGTC
GGGCTCCAGTGCGTTTGGGCTGTCTGGATTTGGCTCTTCTTCCACGGGGGCCTTCAGCAAGCCTG
CTGGGGGAGCGTTTTCCAACCCCTCGGGTGGTGCTTTTGGACTGTCAGGGACCAGCGGTGGTGCT
TTTGGCTCTGCCAACACTGGAGGTGCATTTGGACAAAACAATAGTCTGTCGGCGTTTGGGCTGAA
CACAGGAACTGGTGCCTTTGGCGCTAAACCCGCGGGAGGGGCATTTGGTCAGACCACCACTGGCT
CGTCGGGAGCGTTTGGACTGTCGGGTTTTGGCAGCACACCAGCGCTGGGATCGGCGTTTGGCGCC
ACCAACAACAACACGTCTGCGTTTGGGAAACCCGCAGGCGGTGCT
Right flanking sequence: Indices 146137 -- 146636
AGTCTTCTGGCGGTGCTTTCGGGAAACCCGCGGGCGGAGCGTTTGGTCTGACCCCCTCCACGGGC
GCTTTTGGCTCCCAGAACACCGGCTCGACCTCTGCTTTTGGTCTGAGCGGTGTGGGGTCTAGTGC
CACCCCCGCAGGCAACCCGTTTGCGTCCACCGCGGGCAAAGCCAACCCATTTGGCGGATCGTCCA
CCAGCGGAGGCGCGTTTGGCTCTACCAACAACAACACGAGCGCTTTTGGCGCCAACACCAATAGC
TCTAGCGCGTTTGGAGCCCCCGCCTCCTCTGGGAGTGCTTTTGGTTCAGGGAACACTGGTGGGGC
CTTTGGTTCCACCAACACCAATACTGGCGGCGCTTTTGGGAGCACGGCACCAGCGGGTGGCAGTG
CCTTTGGCGCCAAGCCCGCCACATCGGCGTTTGGGTCCCTGGGCAGTGCGTTCGGGGCCACTCCT
TCGCTGCTGGCATTTGGGGCGCAAACGGGCACGCCAGCGGCCAAC
Found at i:153840 original size:13 final size:13
Alignment explanation
Indices: 153822--153849 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
153812 GGCGCAGCGT
153822 GGTATTGTTGGCC
1 GGTATTGTTGGCC
153835 GGTATTGTTGGCC
1 GGTATTGTTGGCC
153848 GG
1 GG
153850 CAACGGGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.43, T:0.36
Consensus pattern (13 bp):
GGTATTGTTGGCC
Left flanking sequence: Indices 153322 -- 153821
GCCGTGGGCGTAGTACCCGCGTGGCAGGGTGCCTCCGCGGAGGGTGCTGAGGTTCTGGTTGGTGA
GGGGGAACTCGGTGTTGCGGCGGTTCATCCGCCGGCTCTCGTGTGACATCTCCGATGGGGGTCAC
TTGTTCACGCCGCTGGTTACCTCGAGATCAATCGCGACAACCGTACCTTAATTCTCACAGTATTT
GCGCTTGGTTGCCGTGGGCCGGTATATAGGCGATGGTACATCTGACTCGCGTCAGGGCTGCCGGG
GACAGTGGCACCACGCGCCAGCGCAGTGGCCCGCCGTGGAGCCGCCCGGGTTGCCGTCCGGCGAC
GGAGACGTGGTGCTTTTCTACTGCTTGAGCGGCCTCCGGGGCGTTCCCGGGTGGTCACCGGGCTT
ATCTTGGGGCCAGGGATCGCAACCTCGCTAAATTTTCACCGTTGTCAACGGGACGGGCGTGGGGC
TTTGTGCGACATCCGAGCGGGAGGGTTGCCAAATGGGCGCAGCGT
Right flanking sequence: Indices 153850 -- 154349
CAACGGGCCTGTGCCTATTGTTTGGCGGTGGGTCTCGCTTAGCCGTGTAACCGCGCATTGCCATG
CTAAAAAATAGATCAATACGCCTGCGGACAAGCGTTTTCTTTGTGGCACTTGTTGGGGGCTTTGA
TGAGTCGAGCAGCTGGGTTTGGGCCTGGTGCTTCGACCAAAGGAACCTTCGCTTGCTGCTCGATC
AGCGAACCCTTGCAGATTCTTGGCTGCTCTGGGCAACCTGTCGTGTGCTCGTTATGCGCCCACCT
GTATCGCGGGGTATCCATGCATGTATTAGTCTATAGTTAATTCGTTGATGATGTCTTCCGCCAGG
TAGCGGTTGCCCAAGGGCTGTCTCTCGGTGGTTTCGTGCACAGGCCACATCATCCCCGGGGCAGA
GCCTCGCAAGGTGACGATGCACCCGTAGCACAAGTCCACCGGGGTGTCGAGCTGGGCCTCGGGCT
GGGTGTGGGCAGCAAGGTAGGCGTCGTAGTTGGCGCGGTCCTCGT
Found at i:155581 original size:16 final size:16
Alignment explanation
Indices: 155560--155617 Score: 80
Period size: 16 Copynumber: 3.6 Consensus size: 16
155550 ACTTTGGTTC
155560 ATGGTACCTTGAGTTA
1 ATGGTACCTTGAGTTA
* *
155576 ATGGTACCTTGGGTTG
1 ATGGTACCTTGAGTTA
* *
155592 ATGTTACCTTGAGTGA
1 ATGGTACCTTGAGTTA
155608 ATGGTACCTT
1 ATGGTACCTT
155618 TCTAGGTGAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.38
Consensus pattern (16 bp):
ATGGTACCTTGAGTTA
Left flanking sequence: Indices 155060 -- 155559
AACCGCGCCAACATCCGCGCCAACTCATCCGCCACCGGCTTATCGCGGTCCTCCTGCTCGATCAC
CGCCACTACCACCTCGTAACCGGTACGTCCCTGGTAGTTCTGGTGCTGTTCCAAAAGCATCGATC
CCACGCAGTCGGCCAACACGAGGGAGCTGAGCCCGCCCGACACCGCGAGAAGCACCCGTGTCTTG
GTGTTGACTGGCCCGTTTTTGTCGTAGCGGACTTTGTAGCGCTCGGAGAGCATCAGCTTGCGTTG
TTTGCCGCGAATGAAGCGGACAAAGCACTCGCCACAGTAGTTGTCCTTGCGGGCATTAAGCACCG
CGGGGTGTTCTTTGCACCGGTCGCAAACGACGTCGTGGCCTTCGAGCCACTCGATCGCTGACAAC
GGCATGAAAGGTGGTGTTTGCAGCCGCGAGATGCCCCTGCAGATAGCTATGAAGTGGTGGAATGA
TAGAGGTGATAGTGAAAACTGAATAATAGCTGAAAACTTTGGTTC
Right flanking sequence: Indices 155618 -- 156117
TCTAGGTGACTTAACGTTTAGGTGTCTTCATTTCACGTAAACCTTCTCTCTCCTTAGATTCAGGA
GGTCGAGTCTTACTAACCACACGAAGTTCATTCCGGTGTGTTGTAAAGGTAACCCTACCACCCCG
TCGCCAACTACACCACCCCTCGAACCACACACCACTAAACTCCATCAACTTTCCCTATGCCCCTT
CCTTGTCACCCGTGATCTTTTCGCACTGCGTAATCACACCAAAACCCGGGCAACCATGAGTGGAG
AGCCAGAACCCGCAAGCGCCGTGGACACCAAGGCCACCCCTGAAACCCCAGCCAAGCCGATCCCC
GACCGCATCAAAAACCACAAGTTCGACAAACTCGACGACGGCGAGGTCGAGCTCGACAAGACCAA
GGTGTCGTTCACCAAGGACGGCGAGTACAAGTTCTACCCCGACAAGCCGGAAAACCACCGCCACA
AGTACCGGTGGTCGTCCAAGGAGGCAAGCAAGTTCTACGACCCGT
Found at i:155605 original size:32 final size:32
Alignment explanation
Indices: 155555--155617 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
155545 TGAAAACTTT
*
155555 GGTTCATGGTACCTTGAGTTAATGGTACCTTG
1 GGTTCATGGTACCTTGAGTGAATGGTACCTTG
* *
155587 GGTTGATGTTACCTTGAGTGAATGGTACCTT
1 GGTTCATGGTACCTTGAGTGAATGGTACCTT
155618 TCTAGGTGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.38
Consensus pattern (32 bp):
GGTTCATGGTACCTTGAGTGAATGGTACCTTG
Left flanking sequence: Indices 155055 -- 155554
GAGCAAACCGCGCCAACATCCGCGCCAACTCATCCGCCACCGGCTTATCGCGGTCCTCCTGCTCG
ATCACCGCCACTACCACCTCGTAACCGGTACGTCCCTGGTAGTTCTGGTGCTGTTCCAAAAGCAT
CGATCCCACGCAGTCGGCCAACACGAGGGAGCTGAGCCCGCCCGACACCGCGAGAAGCACCCGTG
TCTTGGTGTTGACTGGCCCGTTTTTGTCGTAGCGGACTTTGTAGCGCTCGGAGAGCATCAGCTTG
CGTTGTTTGCCGCGAATGAAGCGGACAAAGCACTCGCCACAGTAGTTGTCCTTGCGGGCATTAAG
CACCGCGGGGTGTTCTTTGCACCGGTCGCAAACGACGTCGTGGCCTTCGAGCCACTCGATCGCTG
ACAACGGCATGAAAGGTGGTGTTTGCAGCCGCGAGATGCCCCTGCAGATAGCTATGAAGTGGTGG
AATGATAGAGGTGATAGTGAAAACTGAATAATAGCTGAAAACTTT
Right flanking sequence: Indices 155618 -- 156117
TCTAGGTGACTTAACGTTTAGGTGTCTTCATTTCACGTAAACCTTCTCTCTCCTTAGATTCAGGA
GGTCGAGTCTTACTAACCACACGAAGTTCATTCCGGTGTGTTGTAAAGGTAACCCTACCACCCCG
TCGCCAACTACACCACCCCTCGAACCACACACCACTAAACTCCATCAACTTTCCCTATGCCCCTT
CCTTGTCACCCGTGATCTTTTCGCACTGCGTAATCACACCAAAACCCGGGCAACCATGAGTGGAG
AGCCAGAACCCGCAAGCGCCGTGGACACCAAGGCCACCCCTGAAACCCCAGCCAAGCCGATCCCC
GACCGCATCAAAAACCACAAGTTCGACAAACTCGACGACGGCGAGGTCGAGCTCGACAAGACCAA
GGTGTCGTTCACCAAGGACGGCGAGTACAAGTTCTACCCCGACAAGCCGGAAAACCACCGCCACA
AGTACCGGTGGTCGTCCAAGGAGGCAAGCAAGTTCTACGACCCGT
Found at i:156291 original size:11 final size:11
Alignment explanation
Indices: 156275--156304 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
156265 GCTGGAACTT
156275 CTGGCGGTAGC
1 CTGGCGGTAGC
156286 CTGGCGGTAGC
1 CTGGCGGTAGC
*
156297 CTTGCGGT
1 CTGGCGGT
156305 GTCGCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.43, T:0.23
Consensus pattern (11 bp):
CTGGCGGTAGC
Left flanking sequence: Indices 155775 -- 156274
CACACCACTAAACTCCATCAACTTTCCCTATGCCCCTTCCTTGTCACCCGTGATCTTTTCGCACT
GCGTAATCACACCAAAACCCGGGCAACCATGAGTGGAGAGCCAGAACCCGCAAGCGCCGTGGACA
CCAAGGCCACCCCTGAAACCCCAGCCAAGCCGATCCCCGACCGCATCAAAAACCACAAGTTCGAC
AAACTCGACGACGGCGAGGTCGAGCTCGACAAGACCAAGGTGTCGTTCACCAAGGACGGCGAGTA
CAAGTTCTACCCCGACAAGCCGGAAAACCACCGCCACAAGTACCGGTGGTCGTCCAAGGAGGCAA
GCAAGTTCTACGACCCGTGCGAGCAGCTGCGCCAGGCGTCGATGGACTGCGTGTTGCGCAACCGC
GAGGACCGGTTGGTGTGCCAGGAGTTCTTTGACGCCTACCGCGAGTGCAAGAAGGATTTCTTCCG
CAAGAAGAAGATGGACAAGCGCGACGGCGTCAAGGGCTGGAACTT
Right flanking sequence: Indices 156305 -- 156804
GTCGCTAGTAGGTAGATAGTGTCAATTCTGGGGATCTAGTGTCTTGCGGTATTGTCTACTGTTGC
GATGTTGCAGTAGTGTTCACTGTTGCGATAGTGCCTACTGTTGTAACAGTCTACTGTTGCAATGG
TGCTGTTGTAATAGTCTCTACTATTGCAGTAGTGTCTATTGTCTAGTGATGTCACTAGTGTCTTG
TCTGTGTAGTGGGATCGACCCACATCGTGTATATAGGGTATCATTTACATCGTTAAATCATTTCG
TACTCGGGCTGGCCGCTGCCAAACGCACACCGCCCGTCCACCATGCCCACAAGGTTGAGCACGTC
GGAGCCCGCGTCGGGCTCGGCGGGTTCGGCGTCGCTGTCGTCGCCACCAAGACCCGCGAGATCGT
CCACGAGCTCGTCGTTTGGCGAGAACATGCGCTCGCGCGAGGTGGCCGTCCACGTACGCGAGAGC
CCGAGGCTGGTTTCGGTGTGGCTGAGGCGGTTGTTGAGGAAGGGG
Found at i:159371 original size:18 final size:18
Alignment explanation
Indices: 159339--159380 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
159329 GCGTGGAAGC
*
159339 AAAGTGGAAGGGAAGCGTG
1 AAAG-GGAAGAGAAGCGTG
159358 AAAGGGAAGAGAAGCGTG
1 AAAGGGAAGAGAAGCGTG
*
159376 GAAGG
1 AAAGG
159381 AAGCTTCTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.40, C:0.05, G:0.48, T:0.07
Consensus pattern (18 bp):
AAAGGGAAGAGAAGCGTG
Left flanking sequence: Indices 158839 -- 159338
GACCCGTCGTGGTGTGGCTGGTGGATGCGCCGCAGATAGCTGCTTCATCACCCCTAGGGGGAGCG
TGTACCGCATGCAGAACCATGCAGGCCATTAAGCGGTGGTAGCAAGTGAGACGACACCGTTTGCG
CGGTTGCGGAGACGACGGCGCAGGGTGGTGGCGTGTCGCGGGATGAGCAGGGTGGTGGGCGGGTA
CGGTTCCCGCGGGCCGGGCGGGCGGGTGGTTTGGCCGGGGTGGTGGTTGCTGTCTGACCTATATC
TGCCAGTTTTGCACCACGGAACCGCAGACGCCACCGCGTGAGAATACGGGTCCTGTGGGACAGCA
CGTACCGTCCCCACATTATGCACCCGATGCATGTTTCCAGCAACCGCAGCCTGGTGTTTCTGACG
TGGTGCACATGTGCCCTGGCACACCACGATGGTTATTGATAGTAGGCGGAACGGTGAAGCAAAGC
AGGCAGAAAAAGAAAGCGTGGAAAAGCGAAGCAAAGCGTGGAAGC
Right flanking sequence: Indices 159381 -- 159880
AAGCTTCTGGGCGAGGATTATATCAGCAATTTATAAGACCATGACTGGTGTGCTTTGTTTTACAC
CATCAGGGTCTAGCCCAGGTGTTATGCTCAATCACCTTAGAAATCACACCGGGTCTTACCTTCGC
ATCCCGGGTGCTCCCTGGTGTTGTCCCCGGTGTCCCCTCGCATTACTAAAACCCGGTCGAGACCC
GTTTCCAACGGGTTCGTTCGAAACCTATTTTTTCGGGAACCTCCGAGACTAGGGTATATTTAAAA
CGCGGGAATCCACGCGTGGACAAAACCCCACAAAATGCCTTTCTCCAACGGTGACTCTTTCCCCG
AGGGCGTCGAGCTCATGCACGTGCCCATTGACATGTCGAGCCTCGACGTCATGGACCCCTTGGTG
TGTGCCCGCCCCGTCCCCTTGAAGGTGGACGACGTGCTTTCGAAGTTGGCCGGCTCCAATGCCTC
GAAGCTCACCATTGTCGCTGCTCCCGGTAGTTTCACGCCTGCGTG
Found at i:164313 original size:14 final size:14
Alignment explanation
Indices: 164294--164322 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
164284 ACTGCGGTTG
164294 TTTTGTTGCACTAC
1 TTTTGTTGCACTAC
164308 TTTTGTTGCACTAC
1 TTTTGTTGCACTAC
164322 T
1 T
164323 GTTGCTGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52
Consensus pattern (14 bp):
TTTTGTTGCACTAC
Left flanking sequence: Indices 163794 -- 164293
GCTGGCTTTGTGCCCATGACCTGCCCGTGCACTACTTGCTGATCTCGTTGTGCGTCGGAGCCCCA
TACTTCCGTTCTTGGAAACCATAACAATGCAAGTGCTAACGCGAGTAATTAACCAAAACGATCAA
ACACAAGGACCAAAAGCGGTCTAGCCCGTATAGAGAGTCTGTCACGCTATGCACCAACCAATTGT
GTCACGCCCCGCCGACCAATAGCCACCCGAATCTCAGATCAACCCAGATCGCTGCACGTCAACCA
GCGCACTATTTTTGTGCGAATTTCAACCTTTGCAGCCCAACGCAGTCAGCCAGCCAAGCACCAAA
ACACGTAGAACAGTATAAATAGCGGGCGTTGCAGCGGTTATTCTTCACTCATCTCAACTGGCTTT
GCCTCTCTCCTCTCCCGGTATTGGGTTGACGCGGCGACGGGACTGGTCCTCTCGTCGCTGTGGAC
AATCAGGTCACTCTACCGCGAGAGGAAGAGGGTGCACTGCGGTTG
Right flanking sequence: Indices 164323 -- 164822
GTTGCTGCTGTTGATCTAGACGCTGAACCTATTCAAACTCGCCGGGCACCTGTTTTGACACCTTG
AGGGGGGTGTCTCAACACCAAGGTGCCCGGCCCATTTCGTTCCTAAACAAAAAAACCCAAAAAAA
TATTCAATTCAATTGCTTTTCCGCCCATGCCCGGTCTAGCAACGCTCTGCGCATCGGGCGTCCCG
ATGTCGTACATTCAAGGCACCAATTGGTCACTGGTGTCTTAGTCCTTTCCTGGAACAGCGGGCCC
AGGGAGCTCTACTGACAAACCGTGGCGGCCACCCGTTTGCACCTTCTCGTTAGTGGCGAGACGCA
AACCGTGACCCCACCTAGTATTGTTACCCCTGACCCCGCTGCCGCTTGGACGTGGACGCGCCGGT
GCGCGAGCGACGCGAACCCGAGGCCTCGGGGCCCAACATGAAAACATATATACTGGAAATAAAAA
ACTTGCCTAAAACGCCAAATTCACTTCTGTAACCGCCGCTGGCCC
Found at i:175887 original size:9 final size:9
Alignment explanation
Indices: 175867--176004 Score: 177
Period size: 9 Copynumber: 15.3 Consensus size: 9
175857 ACGATTAGTC
*
175867 CTTCTTCTT
1 CTTCTCCTT
*
175876 CTTGTCCTT
1 CTTCTCCTT
175885 CTTCTCCTT
1 CTTCTCCTT
* *
175894 TTTGTCCTT
1 CTTCTCCTT
175903 CTTCTCCTT
1 CTTCTCCTT
* *
175912 TTTGTCCTT
1 CTTCTCCTT
175921 CTTCTCCTT
1 CTTCTCCTT
*
175930 CTTTTCCTT
1 CTTCTCCTT
175939 CTTCTCCTT
1 CTTCTCCTT
*
175948 CTTTTCCTT
1 CTTCTCCTT
*
175957 CTTTTCCTT
1 CTTCTCCTT
*
175966 CTTGTCCTT
1 CTTCTCCTT
175975 CTTCTCCTT
1 CTTCTCCTT
*
175984 CTTGTCCTT
1 CTTCTCCTT
175993 CTTCTCCTT
1 CTTCTCCTT
176002 CTT
1 CTT
176005 GGCGGGCTTC
Statistics
Matches: 111, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 111 1.00
ACGTcount: A:0.00, C:0.36, G:0.04, T:0.60
Consensus pattern (9 bp):
CTTCTCCTT
Left flanking sequence: Indices 175367 -- 175866
CCCATTTGACAATGACATGGCCTGCGACTTCTGGGCCGGGCTCCGCGAGACTCCGGTCGAGCAGC
AGCCGTCAAAGATAGTGGGGGTGTTCGAGAACATGCAGGCAGTGGACTATCTCGACGACGATGAC
GTGACGCCGACGCAGGTGTGTGCTGTGGTTGTGTTGGCGATTGCAGACCCCGCATGGTTTGCCCA
GTACACCCACATCAATGACTACTTCCGCAAACAGGTGGACGAATTTGTTGCCAATTTCCCCAAGG
TGTGGGAAGGCAATGATCAGCCCAAGTACAAAGACGGCAAAACCGTTTTTGAGTGGGCGTTGGCG
GCCATGGACCTCGCCACCAGCCCCGAGTCGGAGACTTACGAGTTGTACGAGGGCAGTGAGCAGTG
GCTTGCCAGCTGCGACGAGCTCAAGACCCAGTTGCGCAAGTTTGTCTAGTAATACGTCGTTGTTT
ATTCAATAGTTAATGTACACGGGAAATGGGGTTGAACGATTAGTC
Right flanking sequence: Indices 176005 -- 176504
GGCGGGCTTCTCGTCCTCGTCCTCGTCGTCGGACTCGGCCTTTCTCTTCTTGGAAGGCTTCTCCT
CCACCTCGTCGATGAGATCGCCCATCAGCACACCAGCCAAGGCCACGGCCTCCTTAATGGCGTCG
GCGTTCTTCATGGGGGCGGCACCGGTGTCGTAGAAGTTCAATCTGTCCTCAACCTGCTTTTTGAG
CACTTGACCGTAGGCGGTGGTGGGAACGTCAGAGTAGTTGTCGATTCTCGAGGCAAGCGAGCACT
TGTTGGCCAAGTACCGCGAGATTCTCCCCTTGTTCTTGGCGGAGGCCTTGCCAATGAAAGACGAG
TGGTAGATCAACCCGTACTTGGGGGTGTTACCCTTGGTCTTGAGGGCTCTGAACAACGCCTTCTC
CGCACCGAGAATCTGCACGGTGGAAGCGGCCTGCTTGGACAAGTTGGTCAACGAACCGGCGTGCG
AGATCAACCGGGCACCCACCACCTCACCAATGAGGGTGGACAAGT
Found at i:176002 original size:18 final size:18
Alignment explanation
Indices: 175867--176005 Score: 224
Period size: 18 Copynumber: 7.7 Consensus size: 18
175857 ACGATTAGTC
*
175867 CTTCTTCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
*
175885 CTTCTCCTTTTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
*
175903 CTTCTCCTTTTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
*
175921 CTTCTCCTTCTTTTCCTT
1 CTTCTCCTTCTTGTCCTT
*
175939 CTTCTCCTTCTTTTCCTT
1 CTTCTCCTTCTTGTCCTT
*
175957 CTTTTCCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
175975 CTTCTCCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
175993 CTTCTCCTTCTTG
1 CTTCTCCTTCTTG
176006 GCGGGCTTCT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 114 1.00
ACGTcount: A:0.00, C:0.36, G:0.04, T:0.60
Consensus pattern (18 bp):
CTTCTCCTTCTTGTCCTT
Left flanking sequence: Indices 175367 -- 175866
CCCATTTGACAATGACATGGCCTGCGACTTCTGGGCCGGGCTCCGCGAGACTCCGGTCGAGCAGC
AGCCGTCAAAGATAGTGGGGGTGTTCGAGAACATGCAGGCAGTGGACTATCTCGACGACGATGAC
GTGACGCCGACGCAGGTGTGTGCTGTGGTTGTGTTGGCGATTGCAGACCCCGCATGGTTTGCCCA
GTACACCCACATCAATGACTACTTCCGCAAACAGGTGGACGAATTTGTTGCCAATTTCCCCAAGG
TGTGGGAAGGCAATGATCAGCCCAAGTACAAAGACGGCAAAACCGTTTTTGAGTGGGCGTTGGCG
GCCATGGACCTCGCCACCAGCCCCGAGTCGGAGACTTACGAGTTGTACGAGGGCAGTGAGCAGTG
GCTTGCCAGCTGCGACGAGCTCAAGACCCAGTTGCGCAAGTTTGTCTAGTAATACGTCGTTGTTT
ATTCAATAGTTAATGTACACGGGAAATGGGGTTGAACGATTAGTC
Right flanking sequence: Indices 176006 -- 176505
GCGGGCTTCTCGTCCTCGTCCTCGTCGTCGGACTCGGCCTTTCTCTTCTTGGAAGGCTTCTCCTC
CACCTCGTCGATGAGATCGCCCATCAGCACACCAGCCAAGGCCACGGCCTCCTTAATGGCGTCGG
CGTTCTTCATGGGGGCGGCACCGGTGTCGTAGAAGTTCAATCTGTCCTCAACCTGCTTTTTGAGC
ACTTGACCGTAGGCGGTGGTGGGAACGTCAGAGTAGTTGTCGATTCTCGAGGCAAGCGAGCACTT
GTTGGCCAAGTACCGCGAGATTCTCCCCTTGTTCTTGGCGGAGGCCTTGCCAATGAAAGACGAGT
GGTAGATCAACCCGTACTTGGGGGTGTTACCCTTGGTCTTGAGGGCTCTGAACAACGCCTTCTCC
GCACCGAGAATCTGCACGGTGGAAGCGGCCTGCTTGGACAAGTTGGTCAACGAACCGGCGTGCGA
GATCAACCGGGCACCCACCACCTCACCAATGAGGGTGGACAAGTT
Found at i:181703 original size:17 final size:17
Alignment explanation
Indices: 181683--181730 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 17
181673 ACTGTAGGGT
*
181683 ACACGGTAGGCACCACC
1 ACACCGTAGGCACCACC
*
181700 ACACTGTAGGGCTACCACC
1 ACACCGTA-GGC-ACCACC
*
181719 AAACCGTAGGCA
1 ACACCGTAGGCA
181731 TATCTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 8 0.31
18 6 0.23
19 12 0.46
ACGTcount: A:0.31, C:0.35, G:0.23, T:0.10
Consensus pattern (17 bp):
ACACCGTAGGCACCACC
Left flanking sequence: Indices 181183 -- 181682
ATTGACCATTTCCAAGGTGTTGTTGTCCATCTGCTCGCTTCTTACCGACGCTAACCCGGAGGACC
CGTTGGTGCCGGAGATCGCCCACATCTACAAGACGAACCGTCCCAAGTACGAGGCCACTGCCAAG
GAGTGGACCAAGAAGTACGCGGTCTAATTCGTCGGGTTTATGTGCCGAGGGCCAAAACAGCCGTG
CGAGAAGAATAAATGTGTATAATCCGGTTATATATGTTTAATGATAACGATAGCATGACACCTGC
GGTGTAGCCTCCACCGGACATTACCGGGCTCGGGGTTTGCCCCTCGCTAGTGAGGATAGTAACTG
CGTCTGTCACGCATTAGTTGCATAAAGAAGCCTGATTCGAAGATATTTCCTTCGAAGCGATCGCC
AAGCCAAAGTTTATTATTTCCTTACTGGTCGCAGTACCATTACGTGGACTCCGCACAACCACCTG
GCAACCACGAGACCTAACCGAAGGGTAACCACGAGACTGTAGGGT
Right flanking sequence: Indices 181731 -- 182230
TATCTATTTATTATAAGGCATACGCTGTGCCACATCTATTTATTATTCGCTTCGTGGGGACCCAA
CTGGTGGATGAGCTCGTCCAAAATCGCCACCGTCTCCCGCGGCAGGGCGATCCACGCCGTGCACG
CGCTCAACCGCGCCTTGAAGTCGTTGGACCCGACACTGGCAAACTGGTCGCCAATGTGGAGCGAC
TCGCTCTTTTTGATGGGACACAAGTGCGAGATCAGCTCGTCCATGCACAAGTAGCGCTGCAACGC
CTCCACCCCCAACAGCTTGTCGCCGATGTCCACCCACACGTCGGACCCGCCGTTGAACGCGCACA
CCCGGATCTCCTCCTGGGTGACGTCATTGTTGTCGCCGTTGCCAAACTTGACCTTGGGCCCCAAG
TCGACGTTGGACAACACAAACGAGCACGAGAGCACCATCTCCTCGAGGTGCTCGCGCATGATGTT
GAACCCGGGGTTGGGGATGATGCCCACACTGCGCTTTTTGCGGAT
Found at i:189977 original size:12 final size:12
Alignment explanation
Indices: 189962--190032 Score: 92
Period size: 12 Copynumber: 6.1 Consensus size: 12
189952 TAAGGTGTAT
189962 TAAAGGGTGTGA
1 TAAAGGGTGTGA
189974 TAAA-GG-GTGA
1 TAAAGGGTGTGA
189984 TAAAGGGTGTGA
1 TAAAGGGTGTGA
*
189996 CAAAGGGTGTGA
1 TAAAGGGTGTGA
* *
190008 TGAACGGTGTGA
1 TAAAGGGTGTGA
*
190020 TGAAGGGTGTGA
1 TAAAGGGTGTGA
190032 T
1 T
190033 GTAGTCTGTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
10 8 0.15
11 4 0.08
12 40 0.77
ACGTcount: A:0.31, C:0.03, G:0.42, T:0.24
Consensus pattern (12 bp):
TAAAGGGTGTGA
Left flanking sequence: Indices 189462 -- 189961
TGTGTGGAGACCGGGGAAGCGGTGTTCTTTTTGCGCCAATTGGTTCCGTTCTACGATCTCTTCAA
GTTGTTGTTGTCCGCGTGGTTGTTGGTGCCGATGGTGGCCAAGCTGCTGGAGGTGGACTCCACGA
CGCTGTTTGACGAGACCAAGCAGTGGGCGGCGTTTTCGGAGAACGGGGCCGGGCTCGTGTACTTT
GGCTACATCAAGCCCGCGATCTCGCGCGGTCTAGACCGCGTAGAGTTGCCCAACACGACGCAGAC
GGTGTTTTCGCTGTTCCCTGGCAGTTCCACCGCGGTGGATCTGCTGTATGTGATGGTGTCGCTGT
TGCGGCTGCGGTTGATGGGGCTGCCGCCGGCGGAGCCCGCCGAGGACGAGCTGGTGGTGGAGGTC
GAGGCTCCCGAGACCCCCGTGGCGCCGGCGCCGAAAAAGGGGTGGTTGTGGTAGAGCCTGCCCCG
GCGGCAGGTGTTTTTATAGTAATAGACCCAGGTGGTAAGGTGTAT
Right flanking sequence: Indices 190033 -- 190532
GTAGTCTGTCGGTGTGTACGGCTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTGTCTACGTCAA
GGCTGTCATGTCTGAGAGGATATTGGGCCATGTCAAGCCTACAAGATCGATGTGTGCTACCACTC
GTACTGTCTACTTACACGATAACCGTGTTTACTCGTGTTTACCAATGTTCATGTTTACCCTTGTT
CATGCTTACCGTGTACTTCAGAATCTGTACCCATTGTACATGTACACAATACATTCTAATCACGC
GTCCGTAGTAGACGAGACACGTCCTCCTGTCGGATAGGGGCCTTGATGGCCGTCTACATGTCTGT
CTGTCTGCTACGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTC
ACGTATATACTACGTCTCTAACAAACCAGTGACGACATACACATCTCACCACTCACCACTGTCCC
CACACAATCAACCCCATCCACTGTAGCCCCATCTCCTACATCTCC
Found at i:189987 original size:22 final size:22
Alignment explanation
Indices: 189962--190028 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
189952 TAAGGTGTAT
189962 TAAAGGGTGTGATAAAGGGTGA
1 TAAAGGGTGTGATAAAGGGTGA
*
189984 TAAAGGGTGTGACAAAGGGTGTGA
1 TAAAGGGTGTGATAAA-GG-GTGA
* * *
190008 TGAACGGTGTGATGAAGGGTG
1 TAAAGGGTGTGATAAAGGGTG
190029 TGATGTAGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
22 18 0.47
23 4 0.11
24 16 0.42
ACGTcount: A:0.31, C:0.03, G:0.43, T:0.22
Consensus pattern (22 bp):
TAAAGGGTGTGATAAAGGGTGA
Left flanking sequence: Indices 189462 -- 189961
TGTGTGGAGACCGGGGAAGCGGTGTTCTTTTTGCGCCAATTGGTTCCGTTCTACGATCTCTTCAA
GTTGTTGTTGTCCGCGTGGTTGTTGGTGCCGATGGTGGCCAAGCTGCTGGAGGTGGACTCCACGA
CGCTGTTTGACGAGACCAAGCAGTGGGCGGCGTTTTCGGAGAACGGGGCCGGGCTCGTGTACTTT
GGCTACATCAAGCCCGCGATCTCGCGCGGTCTAGACCGCGTAGAGTTGCCCAACACGACGCAGAC
GGTGTTTTCGCTGTTCCCTGGCAGTTCCACCGCGGTGGATCTGCTGTATGTGATGGTGTCGCTGT
TGCGGCTGCGGTTGATGGGGCTGCCGCCGGCGGAGCCCGCCGAGGACGAGCTGGTGGTGGAGGTC
GAGGCTCCCGAGACCCCCGTGGCGCCGGCGCCGAAAAAGGGGTGGTTGTGGTAGAGCCTGCCCCG
GCGGCAGGTGTTTTTATAGTAATAGACCCAGGTGGTAAGGTGTAT
Right flanking sequence: Indices 190029 -- 190528
TGATGTAGTCTGTCGGTGTGTACGGCTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTGTCTACG
TCAAGGCTGTCATGTCTGAGAGGATATTGGGCCATGTCAAGCCTACAAGATCGATGTGTGCTACC
ACTCGTACTGTCTACTTACACGATAACCGTGTTTACTCGTGTTTACCAATGTTCATGTTTACCCT
TGTTCATGCTTACCGTGTACTTCAGAATCTGTACCCATTGTACATGTACACAATACATTCTAATC
ACGCGTCCGTAGTAGACGAGACACGTCCTCCTGTCGGATAGGGGCCTTGATGGCCGTCTACATGT
CTGTCTGTCTGCTACGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTA
TCTCACGTATATACTACGTCTCTAACAAACCAGTGACGACATACACATCTCACCACTCACCACTG
TCCCCACACAATCAACCCCATCCACTGTAGCCCCATCTCCTACAT
Found at i:190219 original size:16 final size:16
Alignment explanation
Indices: 190198--190237 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
190188 TGTTTACTCG
190198 TGTTTACCAATGTTCA
1 TGTTTACCAATGTTCA
**
190214 TGTTTACCCTTGTTCA
1 TGTTTACCAATGTTCA
*
190230 TGCTTACC
1 TGTTTACC
190238 GTGTACTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.45
Consensus pattern (16 bp):
TGTTTACCAATGTTCA
Left flanking sequence: Indices 189698 -- 190197
AGAGTTGCCCAACACGACGCAGACGGTGTTTTCGCTGTTCCCTGGCAGTTCCACCGCGGTGGATC
TGCTGTATGTGATGGTGTCGCTGTTGCGGCTGCGGTTGATGGGGCTGCCGCCGGCGGAGCCCGCC
GAGGACGAGCTGGTGGTGGAGGTCGAGGCTCCCGAGACCCCCGTGGCGCCGGCGCCGAAAAAGGG
GTGGTTGTGGTAGAGCCTGCCCCGGCGGCAGGTGTTTTTATAGTAATAGACCCAGGTGGTAAGGT
GTATTAAAGGGTGTGATAAAGGGTGATAAAGGGTGTGACAAAGGGTGTGATGAACGGTGTGATGA
AGGGTGTGATGTAGTCTGTCGGTGTGTACGGCTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTG
TCTACGTCAAGGCTGTCATGTCTGAGAGGATATTGGGCCATGTCAAGCCTACAAGATCGATGTGT
GCTACCACTCGTACTGTCTACTTACACGATAACCGTGTTTACTCG
Right flanking sequence: Indices 190238 -- 190737
GTGTACTTCAGAATCTGTACCCATTGTACATGTACACAATACATTCTAATCACGCGTCCGTAGTA
GACGAGACACGTCCTCCTGTCGGATAGGGGCCTTGATGGCCGTCTACATGTCTGTCTGTCTGCTA
CGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCACGTATATAC
TACGTCTCTAACAAACCAGTGACGACATACACATCTCACCACTCACCACTGTCCCCACACAATCA
ACCCCATCCACTGTAGCCCCATCTCCTACATCTCCACAGACTCCATCTCTTACATACCACCTATC
TCTCTCTTACATCCAACCTCTCTCTCTCTTACATCCAACCTATCTCTTGCATCCCTCCCATCTTC
TCCCATCTCTTACATCCTTCCCATCTCACAATCCCCATCTCTCCCCCCCTACATTCCTCCTTACT
ATCGTGTATGCTGCTATTTACAAGTTGAGGTACTTTGCCACCGCG
Found at i:190570 original size:22 final size:22
Alignment explanation
Indices: 190543--190609 Score: 109
Period size: 22 Copynumber: 3.0 Consensus size: 22
190533 ACAGACTCCA
190543 TCTCTTACATACC-ACCTATCTC
1 TCTCTTACAT-CCAACCTATCTC
*
190565 TCTCTTACATCCAACCTCTCTC
1 TCTCTTACATCCAACCTATCTC
190587 TCTCTTACATCCAACCTATCTC
1 TCTCTTACATCCAACCTATCTC
190609 T
1 T
190610 TGCATCCCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
21 2 0.05
22 40 0.95
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (22 bp):
TCTCTTACATCCAACCTATCTC
Left flanking sequence: Indices 190043 -- 190542
GGTGTGTACGGCTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTGTCTACGTCAAGGCTGTCATG
TCTGAGAGGATATTGGGCCATGTCAAGCCTACAAGATCGATGTGTGCTACCACTCGTACTGTCTA
CTTACACGATAACCGTGTTTACTCGTGTTTACCAATGTTCATGTTTACCCTTGTTCATGCTTACC
GTGTACTTCAGAATCTGTACCCATTGTACATGTACACAATACATTCTAATCACGCGTCCGTAGTA
GACGAGACACGTCCTCCTGTCGGATAGGGGCCTTGATGGCCGTCTACATGTCTGTCTGTCTGCTA
CGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCACGTATATAC
TACGTCTCTAACAAACCAGTGACGACATACACATCTCACCACTCACCACTGTCCCCACACAATCA
ACCCCATCCACTGTAGCCCCATCTCCTACATCTCCACAGACTCCA
Right flanking sequence: Indices 190610 -- 191109
TGCATCCCTCCCATCTTCTCCCATCTCTTACATCCTTCCCATCTCACAATCCCCATCTCTCCCCC
CCTACATTCCTCCTTACTATCGTGTATGCTGCTATTTACAAGTTGAGGTACTTTGCCACCGCGGC
GCGGTCGTCGGCGGTGTCGAGGGCCGCGGTGTGGGCCGCCACCCGCAGCGCGCGGGCCTTCTGCT
GGTGCTTGGGCACAAACGCGTTCGGGAGCACCGTGGGCTGGTACAACCCGTCAAACGCCTCGCGC
GGCTTGTGGGCGTCGGCGCCCACGCGGTTCTTTTCGAGGATCGCCTTCATCTCCTCCACGTGGTC
GCGCTCGCCCTCCTCCACAAGCTTGGGGTCGACCTCGGGCCACACAAACGGCTCGGCCATGTCGA
TCGTCATCTTCTTGTACTGGGGCCCGCGGTACCGCGCGTAGTCGTCGCCGCTGCGGTTGAACCGC
GCGTGCAACAACTGCACCGTCACGTTGAGCGCCCGCAACCCGTAC
Found at i:195367 original size:22 final size:22
Alignment explanation
Indices: 195342--195428 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 22
195332 GAATAGAAAA
*
195342 GGAAAAGGAAGAGGAGGGAAGG
1 GGAAAAGGAAGAGAAGGGAAGG
* *
195364 GGAAAAGGAAGAAGTAGGGAGGG
1 GGAAAAGGAAG-AGAAGGGAAGG
* *
195387 GGAGAAGG-GGAGAAGGGAA-G
1 GGAAAAGGAAGAGAAGGGAAGG
* *
195407 GGAGAAGG-GGAGAAGGGAAGG
1 GGAAAAGGAAGAGAAGGGAAGG
195428 G
1 G
195429 AGAAGGGGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
20 20 0.35
21 9 0.16
22 12 0.21
23 16 0.28
ACGTcount: A:0.41, C:0.00, G:0.57, T:0.01
Consensus pattern (22 bp):
GGAAAAGGAAGAGAAGGGAAGG
Left flanking sequence: Indices 194842 -- 195341
GGCAAGAAGTTGATGGCGCAGGTGTTCTTCGGGCCCACCTACTACCAGCGGTTGCGGCACATGGT
CGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTACCCGGCAGCCGGTGGAGG
GTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATTGTATGATTGCCCACGGT
GCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTCCGGGTGCACATCTGCGG
GTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTTTGAGTGTCGGTCGTGCA
AGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGTTGTTGTTCCAGGAGTTG
ATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTGTCGGTGAGAGTCTAAAC
TGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAA
Right flanking sequence: Indices 195429 -- 195928
AGAAGGGGGGAAGGGAAGGAAAGAAAGAAAGAAGGAAAGAAGGGAAGAAAGGGTTATTGCAAATT
AATTCTAAAATAAGCGACTTTTTAAACTCTGACAATGCCTTTCAGACCGGTACGAATTCATGTCT
TTTTGGGTGTTTAACTTAGGCGTTTGCACTGATGCGCATATCGCCAAATAGTTTGTCTACCGCTG
GCTTTTCATGACAATGCTAATTTGAACGAACAAGATACCAATGGCGGGTGGAACTGTCTCAGAAT
TGTCTGAGCACATACAATGCCCTGCCATCGCTTTCAAACTGGAAAACGGCCGGTTTGACGGTCCC
CTCTTTGATCAGAGGTGGCCAGGCTACATCCTGAGCGCTACACATCGCGCCCAGCCGAAAACACA
CGCGCTTGCTTACCACGCTTGTTTACCACGTTTATCTACCTCAGTCCCAGCTACTGCACCCGCCG
CTTTGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAACGGTTG
Found at i:195388 original size:23 final size:22
Alignment explanation
Indices: 195342--195408 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
195332 GAATAGAAAA
195342 GGAAAAGGAAGAGGAGGGAAGG
1 GGAAAAGGAAGAGGAGGGAAGG
* *
195364 GGAAAAGGAAGAAGTAGGGAGGG
1 GGAAAAGGAAG-AGGAGGGAAGG
* * *
195387 GGAGAAGG-GGAGAAGGGAAGG
1 GGAAAAGGAAGAGGAGGGAAGG
195408 G
1 G
195409 AGAAGGGGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
21 10 0.26
22 12 0.32
23 16 0.42
ACGTcount: A:0.42, C:0.00, G:0.57, T:0.01
Consensus pattern (22 bp):
GGAAAAGGAAGAGGAGGGAAGG
Left flanking sequence: Indices 194842 -- 195341
GGCAAGAAGTTGATGGCGCAGGTGTTCTTCGGGCCCACCTACTACCAGCGGTTGCGGCACATGGT
CGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTACCCGGCAGCCGGTGGAGG
GTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATTGTATGATTGCCCACGGT
GCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTCCGGGTGCACATCTGCGG
GTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTTTGAGTGTCGGTCGTGCA
AGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGTTGTTGTTCCAGGAGTTG
ATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTGTCGGTGAGAGTCTAAAC
TGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAA
Right flanking sequence: Indices 195409 -- 195908
AGAAGGGGAGAAGGGAAGGGAGAAGGGGGGAAGGGAAGGAAAGAAAGAAAGAAGGAAAGAAGGGA
AGAAAGGGTTATTGCAAATTAATTCTAAAATAAGCGACTTTTTAAACTCTGACAATGCCTTTCAG
ACCGGTACGAATTCATGTCTTTTTGGGTGTTTAACTTAGGCGTTTGCACTGATGCGCATATCGCC
AAATAGTTTGTCTACCGCTGGCTTTTCATGACAATGCTAATTTGAACGAACAAGATACCAATGGC
GGGTGGAACTGTCTCAGAATTGTCTGAGCACATACAATGCCCTGCCATCGCTTTCAAACTGGAAA
ACGGCCGGTTTGACGGTCCCCTCTTTGATCAGAGGTGGCCAGGCTACATCCTGAGCGCTACACAT
CGCGCCCAGCCGAAAACACACGCGCTTGCTTACCACGCTTGTTTACCACGTTTATCTACCTCAGT
CCCAGCTACTGCACCCGCCGCTTTGGAGTTTTAGGTTGATTTCCC
Found at i:195398 original size:8 final size:8
Alignment explanation
Indices: 195385--195443 Score: 53
Period size: 8 Copynumber: 8.4 Consensus size: 8
195375 AAGTAGGGAG
195385 GGGGAGAA
1 GGGGAGAA
195393 GGGGAGAA
1 GGGGAGAA
195401 --GG-GAA
1 GGGGAGAA
195406 -GGGAGAA
1 GGGGAGAA
195413 GGGGAGAA
1 GGGGAGAA
195421 --GG-GAA
1 GGGGAGAA
195426 -GGGAGAA
1 GGGGAGAA
*
195433 GGGGGGAA
1 GGGGAGAA
195441 GGG
1 GGG
195444 AAGGAAAGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
5 6 0.14
6 8 0.18
7 6 0.14
8 24 0.55
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (8 bp):
GGGGAGAA
Left flanking sequence: Indices 194885 -- 195384
ACCAGCGGTTGCGGCACATGGTCGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTG
CTTACCCGGCAGCCGGTGGAGGGTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCG
TGATTGTATGATTGCCCACGGTGCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACG
CGTTCCGGGTGCACATCTGCGGGTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAAC
CAGTTTGAGTGTCGGTCGTGCAAGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGC
CAAGTTGTTGTTCCAGGAGTTGATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGG
GGGTGTCGGTGAGAGTCTAAACTGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAA
AAGGAAAAGGAAGAGGAGGGAAGGGGAAAAGGAAGAAGTAGGGAG
Right flanking sequence: Indices 195444 -- 195943
AAGGAAAGAAAGAAAGAAGGAAAGAAGGGAAGAAAGGGTTATTGCAAATTAATTCTAAAATAAGC
GACTTTTTAAACTCTGACAATGCCTTTCAGACCGGTACGAATTCATGTCTTTTTGGGTGTTTAAC
TTAGGCGTTTGCACTGATGCGCATATCGCCAAATAGTTTGTCTACCGCTGGCTTTTCATGACAAT
GCTAATTTGAACGAACAAGATACCAATGGCGGGTGGAACTGTCTCAGAATTGTCTGAGCACATAC
AATGCCCTGCCATCGCTTTCAAACTGGAAAACGGCCGGTTTGACGGTCCCCTCTTTGATCAGAGG
TGGCCAGGCTACATCCTGAGCGCTACACATCGCGCCCAGCCGAAAACACACGCGCTTGCTTACCA
CGCTTGTTTACCACGTTTATCTACCTCAGTCCCAGCTACTGCACCCGCCGCTTTGGAGTTTTAGG
TTGATTTCCCGGGTTTTCTCCAAACGGTTGGCGTCCACACTGGTG
Found at i:195411 original size:12 final size:12
Alignment explanation
Indices: 195394--195435 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
195384 GGGGGAGAAG
195394 GGGAGAAGGGAA
1 GGGAGAAGGGAA
195406 GGGAGAA--G--
1 GGGAGAAGGGAA
195414 GGGAGAAGGGAA
1 GGGAGAAGGGAA
195426 GGGAGAAGGG
1 GGGAGAAGGG
195436 GGGAAGGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 7 0.27
10 2 0.08
12 17 0.65
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (12 bp):
GGGAGAAGGGAA
Left flanking sequence: Indices 194894 -- 195393
TGCGGCACATGGTCGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTACCCGG
CAGCCGGTGGAGGGTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATTGTAT
GATTGCCCACGGTGCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTCCGGG
TGCACATCTGCGGGTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTTTGAG
TGTCGGTCGTGCAAGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGTTGTT
GTTCCAGGAGTTGATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTGTCGG
TGAGAGTCTAAACTGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAAGGAAAAG
GAAGAGGAGGGAAGGGGAAAAGGAAGAAGTAGGGAGGGGGAGAAG
Right flanking sequence: Indices 195436 -- 195935
GGGAAGGGAAGGAAAGAAAGAAAGAAGGAAAGAAGGGAAGAAAGGGTTATTGCAAATTAATTCTA
AAATAAGCGACTTTTTAAACTCTGACAATGCCTTTCAGACCGGTACGAATTCATGTCTTTTTGGG
TGTTTAACTTAGGCGTTTGCACTGATGCGCATATCGCCAAATAGTTTGTCTACCGCTGGCTTTTC
ATGACAATGCTAATTTGAACGAACAAGATACCAATGGCGGGTGGAACTGTCTCAGAATTGTCTGA
GCACATACAATGCCCTGCCATCGCTTTCAAACTGGAAAACGGCCGGTTTGACGGTCCCCTCTTTG
ATCAGAGGTGGCCAGGCTACATCCTGAGCGCTACACATCGCGCCCAGCCGAAAACACACGCGCTT
GCTTACCACGCTTGTTTACCACGTTTATCTACCTCAGTCCCAGCTACTGCACCCGCCGCTTTGGA
GTTTTAGGTTGATTTCCCGGGTTTTCTCCAAACGGTTGGCGTCCA
Found at i:195411 original size:20 final size:20
Alignment explanation
Indices: 195386--195447 Score: 115
Period size: 20 Copynumber: 3.1 Consensus size: 20
195376 AGTAGGGAGG
195386 GGGAGAAGGGGAGAAGGGAA
1 GGGAGAAGGGGAGAAGGGAA
195406 GGGAGAAGGGGAGAAGGGAA
1 GGGAGAAGGGGAGAAGGGAA
*
195426 GGGAGAAGGGGGGAAGGGAA
1 GGGAGAAGGGGAGAAGGGAA
195446 GG
1 GG
195448 AAAGAAAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (20 bp):
GGGAGAAGGGGAGAAGGGAA
Left flanking sequence: Indices 194886 -- 195385
CCAGCGGTTGCGGCACATGGTCGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGC
TTACCCGGCAGCCGGTGGAGGGTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGT
GATTGTATGATTGCCCACGGTGCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGC
GTTCCGGGTGCACATCTGCGGGTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACC
AGTTTGAGTGTCGGTCGTGCAAGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCC
AAGTTGTTGTTCCAGGAGTTGATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGG
GGTGTCGGTGAGAGTCTAAACTGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAA
AGGAAAAGGAAGAGGAGGGAAGGGGAAAAGGAAGAAGTAGGGAGG
Right flanking sequence: Indices 195448 -- 195947
AAAGAAAGAAAGAAGGAAAGAAGGGAAGAAAGGGTTATTGCAAATTAATTCTAAAATAAGCGACT
TTTTAAACTCTGACAATGCCTTTCAGACCGGTACGAATTCATGTCTTTTTGGGTGTTTAACTTAG
GCGTTTGCACTGATGCGCATATCGCCAAATAGTTTGTCTACCGCTGGCTTTTCATGACAATGCTA
ATTTGAACGAACAAGATACCAATGGCGGGTGGAACTGTCTCAGAATTGTCTGAGCACATACAATG
CCCTGCCATCGCTTTCAAACTGGAAAACGGCCGGTTTGACGGTCCCCTCTTTGATCAGAGGTGGC
CAGGCTACATCCTGAGCGCTACACATCGCGCCCAGCCGAAAACACACGCGCTTGCTTACCACGCT
TGTTTACCACGTTTATCTACCTCAGTCCCAGCTACTGCACCCGCCGCTTTGGAGTTTTAGGTTGA
TTTCCCGGGTTTTCTCCAAACGGTTGGCGTCCACACTGGTGATGG
Found at i:198471 original size:18 final size:18
Alignment explanation
Indices: 198450--198486 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
198440 TTAGCCTGGG
198450 CTGGGTTAGAGGCCTGCC
1 CTGGGTTAGAGGCCTGCC
* *
198468 CTGGGTTCGTGGCCTGCC
1 CTGGGTTAGAGGCCTGCC
198486 C
1 C
198487 AAGCTGCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.05, C:0.32, G:0.38, T:0.24
Consensus pattern (18 bp):
CTGGGTTAGAGGCCTGCC
Left flanking sequence: Indices 197950 -- 198449
CCTATGCATGCAAATCGATTAGTCGTCGGTCAAGTCGATCACCTCGACCGAGGACTTCTGGGCGG
GCTCGTGGAGGCTCAACCGCGCCATGCCCGACGGCGAGGCAAACGCGGGCGACTCGGTGGCCGAC
CGCGGCGACGGGAGGGTTTCGATGGTGTCGGGGCCCACCTCGATGCCGAGAATCAGCGTGTACCG
CTGGCGCTTGTTGGAGCCGACGTCGGTGGCCGACGGGCGCTTGGGAGACGCCGGGCGGACCGGAG
CAGTGCCCGAGGTGGCCTGGGCCGTGGGCTTGGGCCCGTTGGGCCGGGTGTTTTCTGTGCCCGGG
CCAGAGGTGGAGGCGTTGCTGGACCCAGTGACCGTGCCGCTAGCACCACCACCAGCAACACCACT
GGCTCCACTAATCTTAGTATTAGTGCCACTAGCACCTCCACCGCCACCTGAAGCTGCCGCCGTCA
TCTGTGTACTGGGTCGGTTCGCTGGCGGTGCCGCCTTAGCCTGGG
Right flanking sequence: Indices 198487 -- 198986
AAGCTGCGGCGAGCTGGCGTGCCCCATCGTCGGTGACTTGCTGTGTCCGGTCACCGGCGAGTTTC
CCGCCGAGTGGCCCGTGGACTTCTTCCGGCTGTTGAGGTACTTCAACATCTGAGTAACGTTGTCA
AGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGAAGATAGAAGTACGCCTTCTC
GCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTGGATCTTGGCCCGCT
GGCCTAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCCACGCAAACCGCTTC
TCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACGGCGTTGATGGCCTC
CTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAGCCGCCGCTGGAACG
ACTCGAGCGCGTGGTGATAGTCGCGTTGCTTCTCCTTGCTGGCGC
Found at i:199121 original size:15 final size:15
Alignment explanation
Indices: 199103--199169 Score: 109
Period size: 15 Copynumber: 4.5 Consensus size: 15
199093 TGGCGGTTGG
199103 GCCTGTGCTGGCT-GT
1 GCCTGTGCTGG-TGGT
199118 GCCTGTGCTGGTGGT
1 GCCTGTGCTGGTGGT
*
199133 GCCTGTGCTGGAGGT
1 GCCTGTGCTGGTGGT
199148 GCCTGTGCTGGTGGT
1 GCCTGTGCTGGTGGT
199163 GCCTGTG
1 GCCTGTG
199170 TTGGCGGGGC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
14 1 0.02
15 48 0.98
ACGTcount: A:0.01, C:0.22, G:0.45, T:0.31
Consensus pattern (15 bp):
GCCTGTGCTGGTGGT
Left flanking sequence: Indices 198603 -- 199102
GAGTAACGTTGTCAAGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGAAGATAG
AAGTACGCCTTCTCGCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTG
GATCTTGGCCCGCTGGCCTAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCC
ACGCAAACCGCTTCTCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACG
GCGTTGATGGCCTCCTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAG
CCGCCGCTGGAACGACTCGAGCGCGTGGTGATAGTCGCGTTGCTTCTCCTTGCTGGCGCGCTGCT
GCTCGGAGTATGCGACCTTGAGCCGGTCGACCTCGGGGGTCGTTTTGGGCCCGGTGCTGGCCAGG
GTGGCACCGGGTGGCCCGGGTGGAGCTGACGGTTGTGGCGGTTGG
Right flanking sequence: Indices 199170 -- 199669
TTGGCGGGGCCTGCGCCTGTGCCACGGGTTGTTGGGAAACGCCCGCTTTTGCTCCACTCGATGGG
AAGGCCGCGGCCGTGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGTTGGC
CACCGGGCTCGCCGACAGCGCGCCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCGTCGT
CGGACTCGTCGCGCATCAGCACGTCCGCATCGCCTGGAGGCTGGGCACGGCCGTTGGCCTGTCCG
TTGGGTGGTTGCGGAGCGGGCGGTGGTGCCACCACAGGGGACGTGGTGGGCAGCGCCAGCTCGCC
CGCGTGGGAGGTTCCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGCTTGC
GGGCCACGTGCCGGTGGTGCGGCGCCTGCGCCGGCTGGTTAGACAGGTGTGACTGGATGGACGAG
TGTGACTGGCTGGGTGAGGTAGTTTGGTGAGGTTGGTGAGGCTGA
Found at i:199137 original size:30 final size:30
Alignment explanation
Indices: 199103--199182 Score: 124
Period size: 30 Copynumber: 2.7 Consensus size: 30
199093 TGGCGGTTGG
*
199103 GCCTGTGCTGGCTGTGCCTGTGCTGGTGGT
1 GCCTGTGCTGGCGGTGCCTGTGCTGGTGGT
*
199133 GCCTGTGCTGGAGGTGCCTGTGCTGGTGGT
1 GCCTGTGCTGGCGGTGCCTGTGCTGGTGGT
* *
199163 GCCTGTGTTGGCGGGGCCTG
1 GCCTGTGCTGGCGGTGCCTG
199183 CGCCTGTGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.01, C:0.23, G:0.46, T:0.30
Consensus pattern (30 bp):
GCCTGTGCTGGCGGTGCCTGTGCTGGTGGT
Left flanking sequence: Indices 198603 -- 199102
GAGTAACGTTGTCAAGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGAAGATAG
AAGTACGCCTTCTCGCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTG
GATCTTGGCCCGCTGGCCTAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCC
ACGCAAACCGCTTCTCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACG
GCGTTGATGGCCTCCTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAG
CCGCCGCTGGAACGACTCGAGCGCGTGGTGATAGTCGCGTTGCTTCTCCTTGCTGGCGCGCTGCT
GCTCGGAGTATGCGACCTTGAGCCGGTCGACCTCGGGGGTCGTTTTGGGCCCGGTGCTGGCCAGG
GTGGCACCGGGTGGCCCGGGTGGAGCTGACGGTTGTGGCGGTTGG
Right flanking sequence: Indices 199183 -- 199682
CGCCTGTGCCACGGGTTGTTGGGAAACGCCCGCTTTTGCTCCACTCGATGGGAAGGCCGCGGCCG
TGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGTTGGCCACCGGGCTCGCC
GACAGCGCGCCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCGTCGTCGGACTCGTCGCG
CATCAGCACGTCCGCATCGCCTGGAGGCTGGGCACGGCCGTTGGCCTGTCCGTTGGGTGGTTGCG
GAGCGGGCGGTGGTGCCACCACAGGGGACGTGGTGGGCAGCGCCAGCTCGCCCGCGTGGGAGGTT
CCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGCTTGCGGGCCACGTGCCG
GTGGTGCGGCGCCTGCGCCGGCTGGTTAGACAGGTGTGACTGGATGGACGAGTGTGACTGGCTGG
GTGAGGTAGTTTGGTGAGGTTGGTGAGGCTGATTGGGCTGGTGAG
Found at i:199181 original size:15 final size:15
Alignment explanation
Indices: 199103--199182 Score: 106
Period size: 15 Copynumber: 5.3 Consensus size: 15
199093 TGGCGGTTGG
*
199103 GCCTGTGCTGGCTGT
1 GCCTGTGCTGGCGGT
*
199118 GCCTGTGCTGGTGGT
1 GCCTGTGCTGGCGGT
*
199133 GCCTGTGCTGGAGGT
1 GCCTGTGCTGGCGGT
*
199148 GCCTGTGCTGGTGGT
1 GCCTGTGCTGGCGGT
* *
199163 GCCTGTGTTGGCGGG
1 GCCTGTGCTGGCGGT
199178 GCCTG
1 GCCTG
199183 CGCCTGTGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 58 1.00
ACGTcount: A:0.01, C:0.23, G:0.46, T:0.30
Consensus pattern (15 bp):
GCCTGTGCTGGCGGT
Left flanking sequence: Indices 198603 -- 199102
GAGTAACGTTGTCAAGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGAAGATAG
AAGTACGCCTTCTCGCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTG
GATCTTGGCCCGCTGGCCTAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCC
ACGCAAACCGCTTCTCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACG
GCGTTGATGGCCTCCTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAG
CCGCCGCTGGAACGACTCGAGCGCGTGGTGATAGTCGCGTTGCTTCTCCTTGCTGGCGCGCTGCT
GCTCGGAGTATGCGACCTTGAGCCGGTCGACCTCGGGGGTCGTTTTGGGCCCGGTGCTGGCCAGG
GTGGCACCGGGTGGCCCGGGTGGAGCTGACGGTTGTGGCGGTTGG
Right flanking sequence: Indices 199183 -- 199682
CGCCTGTGCCACGGGTTGTTGGGAAACGCCCGCTTTTGCTCCACTCGATGGGAAGGCCGCGGCCG
TGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGTTGGCCACCGGGCTCGCC
GACAGCGCGCCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCGTCGTCGGACTCGTCGCG
CATCAGCACGTCCGCATCGCCTGGAGGCTGGGCACGGCCGTTGGCCTGTCCGTTGGGTGGTTGCG
GAGCGGGCGGTGGTGCCACCACAGGGGACGTGGTGGGCAGCGCCAGCTCGCCCGCGTGGGAGGTT
CCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGCTTGCGGGCCACGTGCCG
GTGGTGCGGCGCCTGCGCCGGCTGGTTAGACAGGTGTGACTGGATGGACGAGTGTGACTGGCTGG
GTGAGGTAGTTTGGTGAGGTTGGTGAGGCTGATTGGGCTGGTGAG
Found at i:199688 original size:27 final size:27
Alignment explanation
Indices: 199649--199706 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
199639 TGAGGTAGTT
*
199649 TGGTGAGGTTGGTGAGGCTGATTGGGC
1 TGGTGAGGTTGGTGAGGCTGATTGGCC
*
199676 TGGTGAGAG-TGGTGAGGCTGGTTGGCC
1 TGGTGAG-GTTGGTGAGGCTGATTGGCC
199703 TGGT
1 TGGT
199707 TCACGTGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.10, C:0.09, G:0.52, T:0.29
Consensus pattern (27 bp):
TGGTGAGGTTGGTGAGGCTGATTGGCC
Left flanking sequence: Indices 199149 -- 199648
CCTGTGCTGGTGGTGCCTGTGTTGGCGGGGCCTGCGCCTGTGCCACGGGTTGTTGGGAAACGCCC
GCTTTTGCTCCACTCGATGGGAAGGCCGCGGCCGTGGGGGGTTTATTAGCCATCGAGGGGCTCGG
CACGTTGGAGCTGGCGTTGGCCACCGGGCTCGCCGACAGCGCGCCGCGGTGGTTGCTGGGTCTCC
GGGCCAACGGGACGTCGTCGTCGGACTCGTCGCGCATCAGCACGTCCGCATCGCCTGGAGGCTGG
GCACGGCCGTTGGCCTGTCCGTTGGGTGGTTGCGGAGCGGGCGGTGGTGCCACCACAGGGGACGT
GGTGGGCAGCGCCAGCTCGCCCGCGTGGGAGGTTCCCAGGGGTGCTGGTGGGCGAGGACGGCGGA
TGAACACGTCGGCGGGCTTGCGGGCCACGTGCCGGTGGTGCGGCGCCTGCGCCGGCTGGTTAGAC
AGGTGTGACTGGATGGACGAGTGTGACTGGCTGGGTGAGGTAGTT
Right flanking sequence: Indices 199707 -- 200206
TCACGTGATGAGGGTTGACCTGAGGCTGGTTGCCTGGGTTGGCCTGCTGGTTGCCTTGTTTAGCC
TGCTGGTTGCCTGAGTTGGCCTGCTGGTTCTGTTGGTTGACCAGTTGGCTAACCTGATTGGGCGA
CAGATGCCCAGACTGACCAGACTGACTCTTGACTTGTTGAGTAGACCCAGGCACTGGCGGTGATC
CCCGGTTGTGGAAGATCGAAGGCAACGTGTGCGAATGGGGAGCCATCGGCGACTGGGTGTCTGGC
CGGTGCATCCCGTTCATCCCAGCGAATGGCGGGTTGGTGGCGCCTGGCGTCAACAAGTACGGCGA
GCCTGGGACTGGTGGCAGGCGCATCATCCCCTCGGGAAGCGGAGCGAGCGGGAATTGTGGGTTGG
GAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAGTGGGGCCGTGGGTGGTGTGTCGAGGCG
TGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAGAGGCTGG
Found at i:199757 original size:21 final size:21
Alignment explanation
Indices: 199731--199800 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
199721 TTGACCTGAG
199731 GCTGGTTGCCTGGGTTGGCCT
1 GCTGGTTGCCTGGGTTGGCCT
* * *
199752 GCTGGTTGCCTTGTTTAGCCT
1 GCTGGTTGCCTGGGTTGGCCT
*
199773 GCTGGTTGCCTGAGTTGGCCT
1 GCTGGTTGCCTGGGTTGGCCT
199794 GCTGGTT
1 GCTGGTT
199801 CTGTTGGTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.03, C:0.23, G:0.37, T:0.37
Consensus pattern (21 bp):
GCTGGTTGCCTGGGTTGGCCT
Left flanking sequence: Indices 199231 -- 199730
TGGGAAGGCCGCGGCCGTGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGT
TGGCCACCGGGCTCGCCGACAGCGCGCCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCG
TCGTCGGACTCGTCGCGCATCAGCACGTCCGCATCGCCTGGAGGCTGGGCACGGCCGTTGGCCTG
TCCGTTGGGTGGTTGCGGAGCGGGCGGTGGTGCCACCACAGGGGACGTGGTGGGCAGCGCCAGCT
CGCCCGCGTGGGAGGTTCCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGC
TTGCGGGCCACGTGCCGGTGGTGCGGCGCCTGCGCCGGCTGGTTAGACAGGTGTGACTGGATGGA
CGAGTGTGACTGGCTGGGTGAGGTAGTTTGGTGAGGTTGGTGAGGCTGATTGGGCTGGTGAGAGT
GGTGAGGCTGGTTGGCCTGGTTCACGTGATGAGGGTTGACCTGAG
Right flanking sequence: Indices 199801 -- 200300
CTGTTGGTTGACCAGTTGGCTAACCTGATTGGGCGACAGATGCCCAGACTGACCAGACTGACTCT
TGACTTGTTGAGTAGACCCAGGCACTGGCGGTGATCCCCGGTTGTGGAAGATCGAAGGCAACGTG
TGCGAATGGGGAGCCATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATCCCAGCGAATGG
CGGGTTGGTGGCGCCTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGTGGCAGGCGCATCATCC
CCTCGGGAAGCGGAGCGAGCGGGAATTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATG
TGAGGCAAGTGGGGCCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGT
CTGAGTGAGAGGCTGGGGAGGGTTGGCCGTTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGG
CCGGCAGCTGCGCAAACGGCTGGGTGGCCACGGGGTTCAATGGGT
Found at i:199810 original size:21 final size:22
Alignment explanation
Indices: 199731--199810 Score: 64
Period size: 21 Copynumber: 3.8 Consensus size: 22
199721 TTGACCTGAG
199731 GCTGGTTGCCTG--GGTTGGCCT
1 GCTGGTTG-CTGTTGGTTGGCCT
* * *
199752 GCTGGTTGC-CTTGTTTAGCCT
1 GCTGGTTGCTGTTGGTTGGCCT
*
199773 GCTGGTTGCCTG--AGTTGGCCT
1 GCTGGTTG-CTGTTGGTTGGCCT
199794 GCTGGTT-CTGTTGGTTG
1 GCTGGTTGCTGTTGGTTG
199811 ACCAGTTGGC
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
19 3 0.07
20 1 0.02
21 40 0.89
22 1 0.02
ACGTcount: A:0.03, C:0.21, G:0.38, T:0.39
Consensus pattern (22 bp):
GCTGGTTGCTGTTGGTTGGCCT
Left flanking sequence: Indices 199231 -- 199730
TGGGAAGGCCGCGGCCGTGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGT
TGGCCACCGGGCTCGCCGACAGCGCGCCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCG
TCGTCGGACTCGTCGCGCATCAGCACGTCCGCATCGCCTGGAGGCTGGGCACGGCCGTTGGCCTG
TCCGTTGGGTGGTTGCGGAGCGGGCGGTGGTGCCACCACAGGGGACGTGGTGGGCAGCGCCAGCT
CGCCCGCGTGGGAGGTTCCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGC
TTGCGGGCCACGTGCCGGTGGTGCGGCGCCTGCGCCGGCTGGTTAGACAGGTGTGACTGGATGGA
CGAGTGTGACTGGCTGGGTGAGGTAGTTTGGTGAGGTTGGTGAGGCTGATTGGGCTGGTGAGAGT
GGTGAGGCTGGTTGGCCTGGTTCACGTGATGAGGGTTGACCTGAG
Right flanking sequence: Indices 199811 -- 200310
ACCAGTTGGCTAACCTGATTGGGCGACAGATGCCCAGACTGACCAGACTGACTCTTGACTTGTTG
AGTAGACCCAGGCACTGGCGGTGATCCCCGGTTGTGGAAGATCGAAGGCAACGTGTGCGAATGGG
GAGCCATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATCCCAGCGAATGGCGGGTTGGTG
GCGCCTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGTGGCAGGCGCATCATCCCCTCGGGAAG
CGGAGCGAGCGGGAATTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAGT
GGGGCCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAGA
GGCTGGGGAGGGTTGGCCGTTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGGCCGGCAGCTG
CGCAAACGGCTGGGTGGCCACGGGGTTCAATGGGTTGGTCAGCGG
Found at i:200403 original size:21 final size:21
Alignment explanation
Indices: 200377--200418 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
200367 GGTTAGAGCC
* *
200377 TCGATTCTCGTTCGCCAGGTT
1 TCGATTCTCGCTCACCAGGTT
200398 TCGATTCTCGCTCACCAGGTT
1 TCGATTCTCGCTCACCAGGTT
200419 ATTCACGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.36
Consensus pattern (21 bp):
TCGATTCTCGCTCACCAGGTT
Left flanking sequence: Indices 199877 -- 200376
GTAGACCCAGGCACTGGCGGTGATCCCCGGTTGTGGAAGATCGAAGGCAACGTGTGCGAATGGGG
AGCCATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATCCCAGCGAATGGCGGGTTGGTGG
CGCCTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGTGGCAGGCGCATCATCCCCTCGGGAAGC
GGAGCGAGCGGGAATTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAGTG
GGGCCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAGAG
GCTGGGGAGGGTTGGCCGTTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGGCCGGCAGCTGC
GCAAACGGCTGGGTGGCCACGGGGTTCAATGGGTTGGTCAGCGGGCTCGCCAGAGAGTTCAGCGG
GTTCGCCAGGTTCGAGCGTTGGTGCTCGATTGCCAGGTTAGAGCC
Right flanking sequence: Indices 200419 -- 200918
ATTCACGTTCGCCTGGTTATTCTCTCTCGCCAGGTTATTCTCGCTCGCCGCCTGCGGGAACTGGA
TCACCCCGCCCTCCATGGGCTCGTCGTCGTCGCTGTCAAGACACACCACCTCCGTGACCTTGGGC
GGCGGTCGCTTCGGCGCCGTTTCCCCGTCGGAGCCCAGGTCGTCGTCCGAGTCGTCCACGGCGTC
CGCCACCCACGTCCCGTCCGCGTTCACCGTCACCAGCTCGGTGCGGTCGTCCACCACCTTCATGA
TGTCGACAAAGTACTCCAGGAGCGCCAACAGCTCGAGCGTCACCTGGCGGTTGCAGTGGGGACAC
TTCCACGACGGCAACTGGAGCTGCAGCTGGAGATACACCTCGGCGTCAAAGCACTGCGGGTGCGA
GCACTGGGTCAGCTTGACGGGGTACTTCATCCGCACAAACAGCAACGGGTCCCGGAGCAGCACCA
GCAGCGTGCCCACCTCGATGTCGTCGTCGCCGTTGGCCCGGATGG
Found at i:200459 original size:18 final size:18
Alignment explanation
Indices: 200380--200467 Score: 95
Period size: 18 Copynumber: 4.7 Consensus size: 18
200370 TAGAGCCTCG
*
200380 ATTCTCGTTCGCCAGGTTT
1 ATTCTCGCTCGCCAGG-TT
*
200399 CGATTCTCGCTCACCAGGTT
1 --ATTCTCGCTCGCCAGGTT
* * *
200419 ATTCACGTTCGCCTGGTT
1 ATTCTCGCTCGCCAGGTT
*
200437 ATTCTCTCTCGCCAGGTT
1 ATTCTCGCTCGCCAGGTT
200455 ATTCTCGCTCGCC
1 ATTCTCGCTCGCC
200468 GCCTGCGGGA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
18 40 0.71
20 2 0.04
21 14 0.25
ACGTcount: A:0.11, C:0.33, G:0.19, T:0.36
Consensus pattern (18 bp):
ATTCTCGCTCGCCAGGTT
Left flanking sequence: Indices 199880 -- 200379
GACCCAGGCACTGGCGGTGATCCCCGGTTGTGGAAGATCGAAGGCAACGTGTGCGAATGGGGAGC
CATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATCCCAGCGAATGGCGGGTTGGTGGCGC
CTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGTGGCAGGCGCATCATCCCCTCGGGAAGCGGA
GCGAGCGGGAATTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAGTGGGG
CCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAGAGGCT
GGGGAGGGTTGGCCGTTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGGCCGGCAGCTGCGCA
AACGGCTGGGTGGCCACGGGGTTCAATGGGTTGGTCAGCGGGCTCGCCAGAGAGTTCAGCGGGTT
CGCCAGGTTCGAGCGTTGGTGCTCGATTGCCAGGTTAGAGCCTCG
Right flanking sequence: Indices 200468 -- 200967
GCCTGCGGGAACTGGATCACCCCGCCCTCCATGGGCTCGTCGTCGTCGCTGTCAAGACACACCAC
CTCCGTGACCTTGGGCGGCGGTCGCTTCGGCGCCGTTTCCCCGTCGGAGCCCAGGTCGTCGTCCG
AGTCGTCCACGGCGTCCGCCACCCACGTCCCGTCCGCGTTCACCGTCACCAGCTCGGTGCGGTCG
TCCACCACCTTCATGATGTCGACAAAGTACTCCAGGAGCGCCAACAGCTCGAGCGTCACCTGGCG
GTTGCAGTGGGGACACTTCCACGACGGCAACTGGAGCTGCAGCTGGAGATACACCTCGGCGTCAA
AGCACTGCGGGTGCGAGCACTGGGTCAGCTTGACGGGGTACTTCATCCGCACAAACAGCAACGGG
TCCCGGAGCAGCACCAGCAGCGTGCCCACCTCGATGTCGTCGTCGCCGTTGGCCCGGATGGCGTC
GATGGTGGCCTGGCGCGAGATCGCCGGGTGGGCAACGATCCGCTC
Found at i:204316 original size:11 final size:11
Alignment explanation
Indices: 204300--204349 Score: 82
Period size: 11 Copynumber: 4.5 Consensus size: 11
204290 AGATCGGTGT
204300 GGTGGTGGGTA
1 GGTGGTGGGTA
204311 GGTGGTGGGTA
1 GGTGGTGGGTA
*
204322 GGTGGTGAGTA
1 GGTGGTGGGTA
*
204333 GGTGGTGGGCA
1 GGTGGTGGGTA
204344 GGTGGT
1 GGTGGT
204350 TTTCCAACCG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.10, C:0.02, G:0.62, T:0.26
Consensus pattern (11 bp):
GGTGGTGGGTA
Left flanking sequence: Indices 203800 -- 204299
GACCACCTCCGAGTAGGTGCGTCTCACGTCCTTGTACACCTTCAGACGGAACTTGGGGAGGCCCT
GGACAGCCACGCTGAACTTGACGATGGGGTTGCCGGGCTTGTTGCGCTCGACAGCGGTGATTTTG
AACTTGAGCAGGTACTTGGCAAACCGCTCGGGTACGAGTTTGCGGAGCATTGGCTCGGCCACGAG
GTCTGGGGCTCCCGTGGGTGCCTGAGGCTCGGCCTGGGGTGCTGGCTGGTCCACCACGGGCTCGG
ACGCCGGCTGCTCGGGCTGTGGGGCCATTGACGGTGCAGCGAGCGGCTGTGTGTCCTCGGGCTCT
GCAAACGGGTTGTTGTTTTCGAATTCGTCGTCGTATGGTAGGGCCATGGTGACGGTTGGGGTGGG
GGTTCGTGGCTTGAATTATGCGATTGCCTGCATGGGGTGGCAACAGTGAGGTGAGAGGACGGAAT
GAGAAGAGAGGTGGACAGGGACACGGGGTGGAAGTAGATCGGTGT
Right flanking sequence: Indices 204350 -- 204849
TTTCCAACCGGAGCGAGGCTGTGGTTCGTGGTCGTTTGATACCATGGGGAGAAGTAAATGCAACC
GAAGGCTGGATACCCAAGTGGAGCAGTGATTAAGGGGCCCACTTCTATACCCTCACGTCCCTTCC
CTTCCTTCCCTTAACCACACTAGCCCCACCCACACTCGAACTCGGTACCTACTGACCCACTCTCT
AATCCCCACACACATCCACTATTTGCACAAATTTAGCACAATCTGCCAAAACCTACCATTAACGT
ATACGTCTATTACTATGCTTCACTTTCGTCCGAGTCCAACACAATCAACCCGGCCTGCGACGTCT
GCGAGTCAGAATCCACGCTATCGTCCGGGGTGTCCATCTCGGCGATCTCGACGTTGTCCCGCACA
AAGAACTCGTCGATCGACGTGGGTACCTTGACCTCGAGCTTCTCGTCAAACGCCAGCTCAAGCGT
GTAGTACAACATCACCAGCGTCCGCGGCGACCCCGTCTGCTCGTA
Done.